Query 003976
Match_columns 782
No_of_seqs 528 out of 3750
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 15:20:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0055 Multidrug/pheromone ex 100.0 2E-140 5E-145 1244.6 73.0 742 34-779 12-762 (1228)
2 KOG0058 Peptide exporter, ABC 100.0 4E-124 8E-129 1054.4 70.2 572 36-616 134-707 (716)
3 KOG0055 Multidrug/pheromone ex 100.0 3E-122 6E-127 1090.8 73.0 578 33-614 648-1226(1228)
4 PTZ00265 multidrug resistance 100.0 6E-104 1E-108 995.1 94.1 731 33-777 43-919 (1466)
5 COG2274 SunT ABC-type bacterio 100.0 5E-105 1E-109 933.3 73.8 568 34-613 139-708 (709)
6 PRK11174 cysteine/glutathione 100.0 3.1E-99 7E-104 889.6 75.7 569 36-615 9-586 (588)
7 PTZ00265 multidrug resistance 100.0 1.8E-99 4E-104 954.4 77.0 569 36-613 812-1465(1466)
8 COG1132 MdlB ABC-type multidru 100.0 3E-98 6E-103 877.1 76.2 562 37-614 4-565 (567)
9 TIGR00958 3a01208 Conjugate Tr 100.0 2.3E-96 5E-101 879.7 76.3 566 33-610 145-711 (711)
10 TIGR01193 bacteriocin_ABC ABC- 100.0 1.8E-95 4E-100 874.1 75.6 565 35-611 142-707 (708)
11 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.2E-95 7E-100 869.1 77.4 564 35-613 121-685 (686)
12 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.2E-95 7E-100 872.7 74.8 583 18-610 123-709 (710)
13 PRK11160 cysteine/glutathione 100.0 2.9E-94 6.3E-99 843.2 76.3 567 37-611 4-572 (574)
14 TIGR03375 type_I_sec_LssB type 100.0 3.4E-94 7.4E-99 861.3 74.9 557 35-602 133-689 (694)
15 PRK11176 lipid transporter ATP 100.0 1.5E-92 3.3E-97 832.0 76.7 566 37-613 13-579 (582)
16 TIGR01846 type_I_sec_HlyB type 100.0 5E-92 1.1E-96 842.2 77.1 568 35-613 125-692 (694)
17 PRK10790 putative multidrug tr 100.0 3.5E-91 7.6E-96 821.6 76.7 567 36-615 10-577 (592)
18 KOG0056 Heavy metal exporter H 100.0 1E-94 2.2E-99 771.7 38.0 550 58-616 223-777 (790)
19 TIGR02203 MsbA_lipidA lipid A 100.0 1.8E-90 4E-95 812.8 76.4 565 38-613 3-568 (571)
20 TIGR02868 CydC thiol reductant 100.0 1.1E-90 2.4E-95 807.1 70.0 526 39-573 3-529 (529)
21 PRK13657 cyclic beta-1,2-gluca 100.0 1E-89 2.3E-94 808.3 77.4 566 36-614 6-571 (588)
22 COG4988 CydD ABC-type transpor 100.0 6.5E-90 1.4E-94 764.4 70.6 552 54-615 4-557 (559)
23 TIGR01192 chvA glucan exporter 100.0 3.2E-89 6.9E-94 801.9 77.2 565 37-614 7-571 (585)
24 PRK10789 putative multidrug tr 100.0 1.5E-89 3.2E-94 803.1 74.0 542 65-615 10-552 (569)
25 KOG0057 Mitochondrial Fe/S clu 100.0 1.8E-90 3.8E-95 756.6 61.5 573 34-614 10-587 (591)
26 TIGR02204 MsbA_rel ABC transpo 100.0 2.8E-88 6.1E-93 795.0 76.6 569 37-613 6-575 (576)
27 PLN03232 ABC transporter C fam 100.0 9.9E-87 2.2E-91 845.9 84.1 690 52-777 303-1003(1495)
28 TIGR00957 MRP_assoc_pro multi 100.0 8.4E-88 1.8E-92 856.9 73.9 507 100-612 1010-1519(1522)
29 TIGR02857 CydD thiol reductant 100.0 2.2E-87 4.8E-92 779.5 70.9 525 51-585 4-529 (529)
30 PLN03130 ABC transporter C fam 100.0 4.2E-86 9.1E-91 840.4 86.1 693 52-777 303-1006(1622)
31 KOG0054 Multidrug resistance-a 100.0 8.7E-86 1.9E-90 797.8 77.2 639 119-782 266-923 (1381)
32 PLN03130 ABC transporter C fam 100.0 1.9E-86 4.1E-91 843.6 74.2 508 97-614 955-1475(1622)
33 COG5265 ATM1 ABC-type transpor 100.0 1.1E-88 2.3E-93 720.7 41.7 492 116-611 3-496 (497)
34 TIGR01842 type_I_sec_PrtD type 100.0 2.9E-85 6.2E-90 763.7 73.7 533 52-601 8-542 (544)
35 COG4987 CydC ABC-type transpor 100.0 2.7E-85 5.9E-90 715.6 65.8 555 48-611 14-571 (573)
36 PTZ00243 ABC transporter; Prov 100.0 6.3E-85 1.4E-89 828.6 73.5 509 103-613 1006-1546(1560)
37 PLN03232 ABC transporter C fam 100.0 5.6E-85 1.2E-89 829.9 71.2 511 97-614 952-1472(1495)
38 TIGR01194 cyc_pep_trnsptr cycl 100.0 7.7E-81 1.7E-85 727.2 68.5 535 35-593 3-551 (555)
39 TIGR00957 MRP_assoc_pro multi 100.0 2.5E-78 5.5E-83 770.1 86.0 694 54-777 321-1058(1522)
40 TIGR01271 CFTR_protein cystic 100.0 2.1E-79 4.6E-84 777.7 74.1 502 106-615 936-1454(1490)
41 KOG0054 Multidrug resistance-a 100.0 2.1E-79 4.5E-84 742.3 60.2 511 96-612 859-1374(1381)
42 COG4618 ArpD ABC-type protease 100.0 9.1E-76 2E-80 634.9 53.4 537 50-602 24-561 (580)
43 PRK10522 multidrug transporter 100.0 1.9E-74 4.1E-79 672.9 68.2 525 43-600 7-538 (547)
44 TIGR01271 CFTR_protein cystic 100.0 2.7E-72 5.9E-77 712.8 83.5 523 60-611 90-646 (1490)
45 PTZ00243 ABC transporter; Prov 100.0 8.2E-72 1.8E-76 708.9 83.9 696 52-777 246-1051(1560)
46 TIGR00954 3a01203 Peroxysomal 100.0 1.2E-70 2.5E-75 651.0 62.6 532 36-587 78-653 (659)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.4E-54 3.1E-59 461.4 27.3 237 375-613 1-237 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 2.8E-52 6E-57 411.1 22.4 215 376-603 2-227 (240)
49 PRK14257 phosphate ABC transpo 100.0 5.1E-51 1.1E-55 444.8 27.0 223 373-602 77-314 (329)
50 COG1135 AbcC ABC-type metal io 100.0 2.8E-51 6.1E-56 423.1 21.3 220 377-603 2-233 (339)
51 cd03252 ABCC_Hemolysin The ABC 100.0 4.1E-50 8.9E-55 419.6 27.3 235 377-611 1-235 (237)
52 COG1117 PstB ABC-type phosphat 100.0 9E-51 2E-55 398.4 18.8 219 375-602 6-238 (253)
53 COG1125 OpuBA ABC-type proline 100.0 5E-50 1.1E-54 402.2 20.0 213 377-602 2-226 (309)
54 cd03288 ABCC_SUR2 The SUR doma 100.0 8.3E-49 1.8E-53 414.7 28.4 240 372-612 15-255 (257)
55 cd03251 ABCC_MsbA MsbA is an e 100.0 1.5E-48 3.2E-53 407.1 26.9 233 377-609 1-233 (234)
56 cd03253 ABCC_ATM1_transporter 100.0 2.7E-48 5.9E-53 405.5 27.4 234 377-611 1-234 (236)
57 COG4615 PvdE ABC-type sideroph 100.0 2.3E-45 4.9E-50 386.3 48.6 474 99-594 52-530 (546)
58 cd03254 ABCC_Glucan_exporter_l 100.0 3.3E-48 7.1E-53 403.1 26.7 228 375-603 1-228 (229)
59 cd03244 ABCC_MRP_domain2 Domai 100.0 5.2E-48 1.1E-52 399.4 26.1 220 375-595 1-220 (221)
60 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.2E-47 2.6E-52 401.2 27.0 234 377-610 1-235 (238)
61 cd03245 ABCC_bacteriocin_expor 100.0 4.2E-47 9E-52 392.4 26.4 220 375-594 1-220 (220)
62 COG3839 MalK ABC-type sugar tr 100.0 3.3E-47 7.1E-52 407.6 22.3 212 376-602 3-224 (338)
63 PRK13631 cbiO cobalt transport 100.0 1.8E-46 3.9E-51 407.9 26.2 220 376-602 21-266 (320)
64 TIGR02314 ABC_MetN D-methionin 100.0 1E-46 2.2E-51 412.0 23.9 224 377-611 2-242 (343)
65 cd03261 ABC_Org_Solvent_Resist 100.0 1.2E-46 2.5E-51 393.1 23.4 217 377-606 1-231 (235)
66 COG1122 CbiO ABC-type cobalt t 100.0 8.5E-47 1.8E-51 390.0 21.8 215 376-602 3-229 (235)
67 COG1120 FepC ABC-type cobalami 100.0 8.3E-47 1.8E-51 390.4 21.4 214 376-602 2-229 (258)
68 cd03248 ABCC_TAP TAP, the Tran 100.0 2.9E-46 6.2E-51 387.8 24.7 219 372-590 7-226 (226)
69 cd03260 ABC_PstB_phosphate_tra 100.0 2.1E-46 4.6E-51 389.1 22.4 212 377-599 1-227 (227)
70 COG1136 SalX ABC-type antimicr 100.0 6E-46 1.3E-50 376.9 24.4 206 377-592 2-222 (226)
71 COG1127 Ttg2A ABC-type transpo 100.0 3.8E-46 8.2E-51 373.1 22.1 222 376-610 8-245 (263)
72 COG3840 ThiQ ABC-type thiamine 100.0 3.6E-46 7.8E-51 356.9 19.5 211 377-604 2-222 (231)
73 COG3842 PotA ABC-type spermidi 100.0 1.6E-46 3.4E-51 404.5 18.9 214 375-603 4-228 (352)
74 PRK13650 cbiO cobalt transport 100.0 1.1E-45 2.3E-50 395.4 25.2 216 376-602 4-230 (279)
75 COG1116 TauB ABC-type nitrate/ 100.0 4E-46 8.8E-51 378.3 20.4 198 376-591 3-212 (248)
76 PRK14269 phosphate ABC transpo 100.0 9.1E-46 2E-50 389.1 23.8 218 376-602 2-231 (246)
77 COG4178 ABC-type uncharacteriz 100.0 4.2E-42 9.1E-47 388.9 54.9 471 97-586 88-587 (604)
78 cd03219 ABC_Mj1267_LivG_branch 100.0 1.4E-45 3E-50 385.1 22.5 221 377-601 1-232 (236)
79 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.4E-45 9.5E-50 373.9 25.4 203 375-596 5-207 (207)
80 PRK13635 cbiO cobalt transport 100.0 4.2E-45 9.2E-50 390.7 24.8 218 376-604 5-232 (279)
81 COG2884 FtsE Predicted ATPase 100.0 1.1E-45 2.5E-50 356.4 17.9 208 377-596 2-221 (223)
82 TIGR00960 3a0501s02 Type II (G 100.0 2.1E-45 4.5E-50 378.7 21.2 203 377-590 2-216 (216)
83 PRK14273 phosphate ABC transpo 100.0 4.8E-45 1E-49 385.4 24.4 218 376-602 7-239 (254)
84 PRK11650 ugpC glycerol-3-phosp 100.0 4.4E-45 9.4E-50 402.0 24.9 213 376-602 3-225 (356)
85 PRK13647 cbiO cobalt transport 100.0 5.6E-45 1.2E-49 388.9 24.9 213 376-600 4-226 (274)
86 PRK14242 phosphate transporter 100.0 3.9E-45 8.4E-50 385.9 23.4 218 376-602 6-238 (253)
87 cd03256 ABC_PhnC_transporter A 100.0 4.6E-45 9.9E-50 382.3 23.8 212 377-600 1-233 (241)
88 TIGR00972 3a0107s01c2 phosphat 100.0 4.9E-45 1.1E-49 383.7 23.9 217 377-602 2-233 (247)
89 PRK13643 cbiO cobalt transport 100.0 6.2E-45 1.4E-49 391.2 24.7 216 377-602 2-234 (288)
90 PRK11432 fbpC ferric transport 100.0 3.2E-45 6.9E-50 402.1 22.9 212 376-602 6-227 (351)
91 TIGR01186 proV glycine betaine 100.0 2.8E-45 6E-50 402.8 22.2 200 392-602 7-220 (363)
92 cd03263 ABC_subfamily_A The AB 100.0 5E-45 1.1E-49 376.9 22.7 211 377-599 1-219 (220)
93 PRK14250 phosphate ABC transpo 100.0 1.2E-44 2.5E-49 379.6 25.7 215 376-602 3-222 (241)
94 COG1124 DppF ABC-type dipeptid 100.0 3.7E-45 8E-50 367.8 20.8 224 376-609 3-240 (252)
95 PRK11153 metN DL-methionine tr 100.0 6.2E-45 1.3E-49 399.9 24.5 215 377-602 2-231 (343)
96 TIGR02315 ABC_phnC phosphonate 100.0 7.3E-45 1.6E-49 381.3 23.9 212 377-600 2-234 (243)
97 PRK10744 pstB phosphate transp 100.0 1E-44 2.2E-49 384.2 24.9 220 374-602 11-245 (260)
98 cd03224 ABC_TM1139_LivF_branch 100.0 6.6E-45 1.4E-49 376.4 22.8 217 377-601 1-221 (222)
99 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.8E-44 8.3E-49 382.7 29.3 241 347-610 15-256 (282)
100 cd03258 ABC_MetN_methionine_tr 100.0 9.3E-45 2E-49 378.2 23.8 214 377-601 2-230 (233)
101 PRK13637 cbiO cobalt transport 100.0 1.1E-44 2.5E-49 388.9 25.2 217 377-602 3-235 (287)
102 COG3638 ABC-type phosphate/pho 100.0 5.5E-45 1.2E-49 363.8 20.9 214 376-601 3-237 (258)
103 PRK13646 cbiO cobalt transport 100.0 1.1E-44 2.4E-49 389.0 24.6 220 377-603 3-237 (286)
104 cd03296 ABC_CysA_sulfate_impor 100.0 6.6E-45 1.4E-49 380.9 22.4 211 377-602 3-227 (239)
105 TIGR03265 PhnT2 putative 2-ami 100.0 6.6E-45 1.4E-49 400.2 23.2 213 376-603 4-226 (353)
106 PRK13642 cbiO cobalt transport 100.0 1.9E-44 4.2E-49 385.5 25.3 218 376-604 4-232 (277)
107 cd03250 ABCC_MRP_domain1 Domai 100.0 1.5E-44 3.2E-49 369.2 22.9 199 377-589 1-204 (204)
108 PRK14235 phosphate transporter 100.0 1.6E-44 3.4E-49 384.2 23.8 220 374-602 17-252 (267)
109 PRK14267 phosphate ABC transpo 100.0 1.7E-44 3.8E-49 380.9 23.9 218 376-602 4-238 (253)
110 cd03259 ABC_Carb_Solutes_like 100.0 6.7E-45 1.5E-49 374.1 20.1 203 377-594 1-213 (213)
111 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.9E-44 6.3E-49 375.3 24.5 216 377-602 2-222 (236)
112 PRK13632 cbiO cobalt transport 100.0 2.8E-44 6.2E-49 383.0 24.7 216 376-602 7-232 (271)
113 PRK09452 potA putrescine/sperm 100.0 2.4E-44 5.2E-49 397.8 24.9 212 376-602 14-235 (375)
114 PRK13634 cbiO cobalt transport 100.0 2.6E-44 5.6E-49 386.8 24.3 216 377-602 3-236 (290)
115 TIGR03258 PhnT 2-aminoethylpho 100.0 1.7E-44 3.6E-49 397.7 23.3 213 375-602 4-229 (362)
116 PRK14240 phosphate transporter 100.0 2.5E-44 5.3E-49 379.1 23.6 219 375-602 2-235 (250)
117 PRK10851 sulfate/thiosulfate t 100.0 1.9E-44 4.2E-49 396.5 23.6 212 376-602 2-227 (353)
118 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.3E-44 2.9E-49 373.1 21.0 203 377-590 1-218 (218)
119 cd03226 ABC_cobalt_CbiO_domain 100.0 1.2E-44 2.5E-49 370.2 20.4 199 378-591 1-205 (205)
120 PRK11629 lolD lipoprotein tran 100.0 2.4E-44 5.2E-49 375.2 22.9 209 376-595 5-228 (233)
121 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.4E-44 5.3E-49 370.1 22.5 210 376-602 4-228 (254)
122 cd03264 ABC_drug_resistance_li 100.0 2E-44 4.4E-49 370.0 22.0 203 377-594 1-211 (211)
123 PRK13640 cbiO cobalt transport 100.0 5E-44 1.1E-48 383.2 25.7 216 376-602 5-233 (282)
124 PRK14274 phosphate ABC transpo 100.0 3.9E-44 8.4E-49 379.6 24.5 218 376-602 12-244 (259)
125 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.7E-44 3.6E-49 384.3 21.8 212 378-602 26-251 (269)
126 PRK13633 cobalt transporter AT 100.0 3.7E-44 8E-49 383.9 24.5 216 376-602 4-234 (280)
127 PRK14247 phosphate ABC transpo 100.0 2.9E-44 6.3E-49 378.5 23.1 218 376-602 3-235 (250)
128 PRK14236 phosphate transporter 100.0 4E-44 8.7E-49 382.1 24.2 220 374-602 23-257 (272)
129 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.1E-44 6.8E-49 376.5 22.7 218 377-602 1-226 (242)
130 TIGR03005 ectoine_ehuA ectoine 100.0 3.4E-44 7.4E-49 378.5 23.1 213 377-602 1-237 (252)
131 PRK09536 btuD corrinoid ABC tr 100.0 3.4E-44 7.4E-49 398.8 24.3 221 376-610 3-236 (402)
132 PRK14251 phosphate ABC transpo 100.0 3.3E-44 7.2E-49 378.3 23.0 218 376-602 4-236 (251)
133 PRK14239 phosphate transporter 100.0 3.8E-44 8.2E-49 378.0 23.4 218 376-602 5-237 (252)
134 cd03218 ABC_YhbG The ABC trans 100.0 3.1E-44 6.8E-49 374.0 22.1 216 377-601 1-222 (232)
135 PRK13636 cbiO cobalt transport 100.0 4.5E-44 9.8E-49 383.7 23.8 215 376-602 5-232 (283)
136 PRK13651 cobalt transporter AT 100.0 5.2E-44 1.1E-48 386.3 24.4 216 377-602 3-255 (305)
137 PRK10575 iron-hydroxamate tran 100.0 4.4E-44 9.6E-49 380.4 23.5 213 376-601 11-237 (265)
138 PRK14245 phosphate ABC transpo 100.0 3.9E-44 8.6E-49 377.5 22.8 218 376-602 3-235 (250)
139 PRK14237 phosphate transporter 100.0 5.8E-44 1.3E-48 379.8 24.2 220 374-602 18-252 (267)
140 PRK14268 phosphate ABC transpo 100.0 4.8E-44 1E-48 378.6 23.5 218 376-602 12-243 (258)
141 PRK13648 cbiO cobalt transport 100.0 7.9E-44 1.7E-48 379.2 25.3 216 376-602 7-232 (269)
142 PRK13652 cbiO cobalt transport 100.0 7.3E-44 1.6E-48 381.0 25.1 214 377-602 4-228 (277)
143 cd03266 ABC_NatA_sodium_export 100.0 3.5E-44 7.6E-49 370.0 21.8 206 377-594 2-218 (218)
144 PRK11000 maltose/maltodextrin 100.0 4.1E-44 9E-49 396.6 23.9 212 376-602 3-224 (369)
145 TIGR03410 urea_trans_UrtE urea 100.0 2.3E-44 5E-49 374.5 20.5 211 377-599 1-219 (230)
146 TIGR02211 LolD_lipo_ex lipopro 100.0 4.9E-44 1.1E-48 369.7 22.6 204 377-591 2-220 (221)
147 PRK11124 artP arginine transpo 100.0 7.4E-44 1.6E-48 373.6 24.1 216 377-601 3-230 (242)
148 PRK09493 glnQ glutamine ABC tr 100.0 5.9E-44 1.3E-48 373.9 23.2 217 377-602 2-226 (240)
149 PRK11264 putative amino-acid A 100.0 1.1E-43 2.3E-48 374.2 25.2 217 377-602 4-234 (250)
150 cd03268 ABC_BcrA_bacitracin_re 100.0 4.8E-44 1E-48 366.4 21.8 203 377-594 1-208 (208)
151 PRK14244 phosphate ABC transpo 100.0 3.3E-44 7.2E-49 378.3 21.2 217 377-602 6-238 (251)
152 cd03265 ABC_DrrA DrrA is the A 100.0 6.3E-44 1.4E-48 368.8 22.9 209 377-599 1-219 (220)
153 PRK11614 livF leucine/isoleuci 100.0 5.7E-44 1.2E-48 373.3 22.8 218 376-601 5-226 (237)
154 PRK13644 cbiO cobalt transport 100.0 1.2E-43 2.7E-48 378.6 25.7 214 377-602 2-225 (274)
155 PRK11231 fecE iron-dicitrate t 100.0 6.6E-44 1.4E-48 377.0 23.4 220 377-610 3-235 (255)
156 cd03247 ABCC_cytochrome_bd The 100.0 5E-44 1.1E-48 357.5 21.3 178 377-594 1-178 (178)
157 PRK14249 phosphate ABC transpo 100.0 8.6E-44 1.9E-48 375.2 24.1 218 376-602 4-236 (251)
158 PRK14248 phosphate ABC transpo 100.0 8.3E-44 1.8E-48 378.9 24.0 218 376-602 21-253 (268)
159 PRK14256 phosphate ABC transpo 100.0 8.2E-44 1.8E-48 375.6 23.6 220 374-602 2-237 (252)
160 PRK13649 cbiO cobalt transport 100.0 1.2E-43 2.6E-48 380.1 25.0 219 377-602 3-235 (280)
161 cd03225 ABC_cobalt_CbiO_domain 100.0 5E-44 1.1E-48 367.0 21.2 201 378-589 1-211 (211)
162 cd03301 ABC_MalK_N The N-termi 100.0 4.6E-44 1E-48 367.8 20.9 203 377-594 1-213 (213)
163 cd03290 ABCC_SUR1_N The SUR do 100.0 9.8E-44 2.1E-48 366.9 23.3 210 378-589 2-218 (218)
164 cd03292 ABC_FtsE_transporter F 100.0 7.1E-44 1.5E-48 366.6 21.9 202 377-590 1-214 (214)
165 PRK13645 cbiO cobalt transport 100.0 1.1E-43 2.3E-48 382.1 24.1 223 374-602 4-241 (289)
166 PRK14259 phosphate ABC transpo 100.0 1.4E-43 3E-48 377.3 24.6 219 375-602 12-254 (269)
167 PRK14261 phosphate ABC transpo 100.0 1.3E-43 2.8E-48 374.3 24.2 218 376-602 6-238 (253)
168 TIGR02769 nickel_nikE nickel i 100.0 9.3E-44 2E-48 377.9 23.3 223 377-610 3-250 (265)
169 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.2E-44 9.1E-49 370.1 19.9 205 377-597 1-219 (220)
170 PRK10619 histidine/lysine/argi 100.0 1.2E-43 2.6E-48 375.4 23.7 215 375-602 4-242 (257)
171 PRK11831 putative ABC transpor 100.0 9.5E-44 2.1E-48 378.6 23.0 222 376-610 7-243 (269)
172 TIGR03411 urea_trans_UrtD urea 100.0 1.2E-43 2.6E-48 372.0 23.3 221 377-601 3-231 (242)
173 PRK13537 nodulation ABC transp 100.0 1E-43 2.2E-48 384.5 23.4 217 376-602 7-228 (306)
174 PRK14253 phosphate ABC transpo 100.0 1.7E-43 3.6E-48 372.5 24.3 218 376-602 3-234 (249)
175 TIGR02673 FtsE cell division A 100.0 8E-44 1.7E-48 366.3 21.3 201 377-589 2-214 (214)
176 COG1118 CysA ABC-type sulfate/ 100.0 3.9E-44 8.4E-49 369.2 18.8 213 376-603 2-229 (345)
177 PRK13638 cbiO cobalt transport 100.0 1.6E-43 3.4E-48 377.4 24.3 213 377-602 2-226 (271)
178 PRK14262 phosphate ABC transpo 100.0 1.1E-43 2.4E-48 374.0 22.9 218 376-602 3-235 (250)
179 PRK15079 oligopeptide ABC tran 100.0 1.7E-43 3.7E-48 386.0 25.1 223 376-608 8-259 (331)
180 PRK14238 phosphate transporter 100.0 1.9E-43 4.1E-48 376.6 24.5 218 376-602 24-256 (271)
181 PRK14243 phosphate transporter 100.0 1.9E-43 4.1E-48 375.3 24.4 218 376-602 10-249 (264)
182 PRK10247 putative ABC transpor 100.0 1.1E-43 2.4E-48 368.3 21.9 209 376-597 7-223 (225)
183 PRK14271 phosphate ABC transpo 100.0 2.6E-43 5.6E-48 376.4 25.3 222 376-602 21-252 (276)
184 PRK10895 lipopolysaccharide AB 100.0 1.4E-43 3E-48 371.3 22.7 217 376-601 3-226 (241)
185 cd03257 ABC_NikE_OppD_transpor 100.0 1.2E-43 2.6E-48 368.4 21.7 211 377-594 2-228 (228)
186 PRK14270 phosphate ABC transpo 100.0 2.1E-43 4.5E-48 372.3 23.9 218 376-602 4-236 (251)
187 PRK11300 livG leucine/isoleuci 100.0 2.2E-43 4.8E-48 372.8 23.7 222 376-601 5-243 (255)
188 PRK11247 ssuB aliphatic sulfon 100.0 2.5E-43 5.5E-48 372.2 23.4 204 376-597 12-219 (257)
189 PRK14260 phosphate ABC transpo 100.0 2.6E-43 5.6E-48 373.3 23.3 219 375-602 6-244 (259)
190 cd03235 ABC_Metallic_Cations A 100.0 1E-43 2.2E-48 365.4 19.6 198 378-594 1-213 (213)
191 TIGR03873 F420-0_ABC_ATP propo 100.0 2.9E-43 6.3E-48 372.3 23.6 212 377-601 2-226 (256)
192 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.7E-43 5.9E-48 361.7 22.7 201 377-594 1-211 (211)
193 cd03246 ABCC_Protease_Secretio 100.0 2E-43 4.3E-48 351.6 21.0 172 377-590 1-173 (173)
194 PRK13548 hmuV hemin importer A 100.0 5.1E-43 1.1E-47 370.8 25.3 212 377-601 3-230 (258)
195 cd03300 ABC_PotA_N PotA is an 100.0 1.7E-43 3.7E-48 368.6 21.3 211 377-602 1-221 (232)
196 PRK13641 cbiO cobalt transport 100.0 4.1E-43 8.9E-48 377.0 24.7 220 376-602 2-235 (287)
197 PRK10584 putative ABC transpor 100.0 3.6E-43 7.9E-48 365.0 23.4 207 376-593 6-227 (228)
198 PRK10253 iron-enterobactin tra 100.0 3.9E-43 8.5E-48 373.1 24.0 213 376-601 7-233 (265)
199 PRK10070 glycine betaine trans 100.0 2.4E-43 5.2E-48 391.8 23.3 199 393-602 43-255 (400)
200 TIGR01288 nodI ATP-binding ABC 100.0 2.9E-43 6.2E-48 381.1 23.3 217 376-602 4-225 (303)
201 PRK10771 thiQ thiamine transpo 100.0 5.9E-43 1.3E-47 364.5 24.8 210 377-603 2-221 (232)
202 PRK11607 potG putrescine trans 100.0 3.7E-43 8.1E-48 388.9 24.7 214 375-603 18-241 (377)
203 PRK09473 oppD oligopeptide tra 100.0 3.2E-43 6.9E-48 384.0 23.6 228 376-608 12-259 (330)
204 PRK14266 phosphate ABC transpo 100.0 3.8E-43 8.2E-48 370.0 23.4 218 376-602 3-235 (250)
205 PRK14254 phosphate ABC transpo 100.0 5.7E-43 1.2E-47 375.3 25.0 219 375-602 38-270 (285)
206 cd03262 ABC_HisP_GlnQ_permease 100.0 2.1E-43 4.6E-48 362.9 20.7 205 377-590 1-213 (213)
207 PRK14241 phosphate transporter 100.0 3.4E-43 7.4E-48 372.2 22.8 218 376-602 4-243 (258)
208 PRK14252 phosphate ABC transpo 100.0 4.2E-43 9.1E-48 372.9 23.5 220 374-602 14-250 (265)
209 PRK11022 dppD dipeptide transp 100.0 4.7E-43 1E-47 382.2 24.4 224 377-608 4-251 (326)
210 PRK10908 cell division protein 100.0 5.1E-43 1.1E-47 362.5 23.4 204 377-592 2-217 (222)
211 TIGR00968 3a0106s01 sulfate AB 100.0 4.7E-43 1E-47 366.4 23.4 211 377-602 1-221 (237)
212 PRK14272 phosphate ABC transpo 100.0 4.9E-43 1.1E-47 369.6 23.2 218 376-602 4-237 (252)
213 TIGR03522 GldA_ABC_ATP gliding 100.0 5.9E-43 1.3E-47 378.2 23.9 216 377-602 3-222 (301)
214 PRK13639 cbiO cobalt transport 100.0 7.3E-43 1.6E-47 372.9 24.2 214 377-602 2-227 (275)
215 PRK11308 dppF dipeptide transp 100.0 8.3E-43 1.8E-47 380.3 25.0 223 376-608 5-252 (327)
216 TIGR01978 sufC FeS assembly AT 100.0 5E-43 1.1E-47 367.3 22.2 212 377-600 1-233 (243)
217 PRK14275 phosphate ABC transpo 100.0 5.1E-43 1.1E-47 376.0 22.4 218 376-602 39-271 (286)
218 PRK14258 phosphate ABC transpo 100.0 7.9E-43 1.7E-47 369.9 23.6 219 375-602 6-246 (261)
219 PRK14263 phosphate ABC transpo 100.0 8.4E-43 1.8E-47 369.6 23.3 218 376-602 8-246 (261)
220 PRK15112 antimicrobial peptide 100.0 1.2E-42 2.5E-47 369.8 24.4 226 376-612 4-252 (267)
221 PRK09984 phosphonate/organopho 100.0 1.5E-42 3.2E-47 368.1 24.9 222 376-612 4-251 (262)
222 cd03269 ABC_putative_ATPase Th 100.0 4.7E-43 1E-47 359.6 20.4 205 377-594 1-210 (210)
223 TIGR03415 ABC_choXWV_ATP choli 100.0 6.5E-43 1.4E-47 385.8 22.9 206 392-608 38-262 (382)
224 PRK14255 phosphate ABC transpo 100.0 7.8E-43 1.7E-47 368.1 22.5 218 376-602 5-237 (252)
225 PRK13536 nodulation factor exp 100.0 9.7E-43 2.1E-47 381.2 23.4 217 376-602 41-262 (340)
226 PRK14246 phosphate ABC transpo 100.0 1E-42 2.3E-47 368.0 22.8 226 375-609 9-250 (257)
227 PRK14264 phosphate ABC transpo 100.0 1.6E-42 3.4E-47 375.4 24.5 219 375-602 44-290 (305)
228 PRK11144 modC molybdate transp 100.0 1.2E-42 2.5E-47 383.2 23.2 211 377-603 2-220 (352)
229 TIGR01277 thiQ thiamine ABC tr 100.0 1.7E-42 3.6E-47 356.5 22.7 202 377-595 1-212 (213)
230 PRK13547 hmuV hemin importer A 100.0 1.7E-42 3.6E-47 369.0 23.4 216 377-601 2-244 (272)
231 PRK11701 phnK phosphonate C-P 100.0 3.9E-42 8.5E-47 364.1 26.0 219 376-602 6-242 (258)
232 PRK14265 phosphate ABC transpo 100.0 3.8E-42 8.3E-47 367.1 26.1 218 376-602 20-259 (274)
233 cd03299 ABC_ModC_like Archeal 100.0 1.9E-42 4E-47 361.5 23.0 210 377-602 1-220 (235)
234 PRK15093 antimicrobial peptide 100.0 2.7E-42 5.9E-47 377.2 25.1 224 377-608 4-256 (330)
235 cd03234 ABCG_White The White s 100.0 1.2E-42 2.7E-47 360.7 20.6 213 377-594 4-226 (226)
236 PRK10419 nikE nickel transport 100.0 3E-42 6.5E-47 366.8 23.2 227 377-610 4-250 (268)
237 TIGR01188 drrA daunorubicin re 100.0 2.9E-42 6.3E-47 373.1 21.8 204 385-602 2-214 (302)
238 TIGR02982 heterocyst_DevA ABC 100.0 5.9E-42 1.3E-46 354.1 22.2 203 377-590 2-219 (220)
239 TIGR02142 modC_ABC molybdenum 100.0 5.3E-42 1.1E-46 378.5 22.9 208 381-603 4-223 (354)
240 PRK10418 nikD nickel transport 100.0 1.2E-41 2.5E-46 359.6 23.7 214 376-602 4-231 (254)
241 COG1131 CcmA ABC-type multidru 100.0 7.8E-42 1.7E-46 366.9 22.6 214 376-602 4-227 (293)
242 cd03228 ABCC_MRP_Like The MRP 100.0 1.2E-41 2.7E-46 338.1 21.0 171 377-589 1-171 (171)
243 TIGR03740 galliderm_ABC gallid 100.0 9.7E-42 2.1E-46 353.2 20.9 205 377-598 1-210 (223)
244 cd03230 ABC_DR_subfamily_A Thi 100.0 9.5E-42 2E-46 339.6 20.0 170 377-590 1-173 (173)
245 PRK11248 tauB taurine transpor 100.0 1.3E-41 2.8E-46 359.3 22.1 203 377-597 2-216 (255)
246 TIGR02323 CP_lyasePhnK phospho 100.0 2.1E-41 4.5E-46 357.4 23.6 218 376-602 3-239 (253)
247 cd03233 ABC_PDR_domain1 The pl 100.0 1.3E-41 2.9E-46 346.9 21.0 190 376-594 3-202 (202)
248 cd03229 ABC_Class3 This class 100.0 1.3E-41 2.8E-46 340.2 20.1 172 377-589 1-178 (178)
249 PRK09580 sufC cysteine desulfu 100.0 2.1E-41 4.6E-46 356.2 22.6 214 377-599 2-233 (248)
250 cd03297 ABC_ModC_molybdenum_tr 100.0 2.1E-41 4.6E-46 348.4 22.1 204 378-594 3-214 (214)
251 COG4175 ProV ABC-type proline/ 100.0 1.2E-41 2.5E-46 350.9 18.9 216 376-602 4-255 (386)
252 cd03213 ABCG_EPDR ABCG transpo 100.0 2.7E-41 5.8E-46 342.5 20.7 182 376-594 3-194 (194)
253 cd03215 ABC_Carb_Monos_II This 100.0 2E-41 4.3E-46 340.0 19.4 172 376-590 4-182 (182)
254 CHL00131 ycf16 sulfate ABC tra 100.0 5E-41 1.1E-45 354.3 23.3 212 376-599 7-239 (252)
255 cd03232 ABC_PDR_domain2 The pl 100.0 2.7E-41 6E-46 341.9 20.2 181 376-594 3-192 (192)
256 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.9E-41 1.1E-45 342.2 21.8 185 377-600 1-192 (200)
257 COG4555 NatA ABC-type Na+ tran 100.0 1.2E-41 2.7E-46 331.0 15.7 213 377-602 2-223 (245)
258 PRK15056 manganese/iron transp 100.0 6.4E-41 1.4E-45 357.4 22.2 209 376-601 6-230 (272)
259 cd03223 ABCD_peroxisomal_ALDP 100.0 6.6E-41 1.4E-45 331.2 20.0 164 377-589 1-164 (166)
260 TIGR03608 L_ocin_972_ABC putat 100.0 4.5E-41 9.8E-46 343.7 18.7 194 379-585 1-206 (206)
261 cd03214 ABC_Iron-Siderophores_ 100.0 8.7E-41 1.9E-45 334.8 19.9 177 378-594 1-180 (180)
262 COG0410 LivF ABC-type branched 100.0 1.4E-40 3E-45 332.7 21.2 220 377-603 4-228 (237)
263 PRK09544 znuC high-affinity zi 100.0 2.2E-40 4.7E-45 349.0 23.5 208 376-610 4-217 (251)
264 PRK03695 vitamin B12-transport 100.0 2.9E-40 6.3E-45 347.7 22.7 210 378-601 2-222 (248)
265 TIGR02770 nickel_nikD nickel i 100.0 1.7E-40 3.8E-45 345.5 20.6 200 393-602 1-216 (230)
266 PRK13549 xylose transporter AT 100.0 1.8E-40 4E-45 383.8 22.9 217 376-601 5-232 (506)
267 PRK15439 autoinducer 2 ABC tra 100.0 3.6E-40 7.9E-45 381.4 25.0 213 376-601 11-229 (510)
268 cd03216 ABC_Carb_Monos_I This 100.0 3.3E-40 7.1E-45 325.3 20.7 159 377-592 1-162 (163)
269 COG1123 ATPase components of v 100.0 2.9E-40 6.2E-45 369.7 22.6 225 376-610 280-529 (539)
270 cd03231 ABC_CcmA_heme_exporter 100.0 4.8E-40 1E-44 335.2 22.4 195 377-585 1-198 (201)
271 PRK13540 cytochrome c biogenes 100.0 4.2E-40 9.2E-45 335.3 20.8 194 377-584 2-198 (200)
272 PRK10261 glutathione transport 100.0 5.9E-40 1.3E-44 387.4 24.9 226 376-611 313-565 (623)
273 TIGR01184 ntrCD nitrate transp 100.0 4.3E-40 9.4E-45 342.5 20.9 191 394-600 1-203 (230)
274 PRK13538 cytochrome c biogenes 100.0 5.5E-40 1.2E-44 335.6 21.1 195 377-585 2-202 (204)
275 PRK09700 D-allose transporter 100.0 7E-40 1.5E-44 379.4 23.7 217 376-601 5-234 (510)
276 PRK10762 D-ribose transporter 100.0 7.8E-40 1.7E-44 378.1 22.7 217 376-601 4-230 (501)
277 PRK10982 galactose/methyl gala 100.0 7.4E-40 1.6E-44 377.5 21.8 213 379-600 1-222 (491)
278 PRK11288 araG L-arabinose tran 100.0 1.1E-39 2.4E-44 376.8 23.1 212 376-596 4-224 (501)
279 cd03267 ABC_NatA_like Similar 100.0 8.2E-40 1.8E-44 341.8 19.3 195 392-594 35-236 (236)
280 PRK10938 putative molybdenum t 100.0 1.7E-39 3.7E-44 374.5 23.9 211 377-602 4-225 (490)
281 PRK13539 cytochrome c biogenes 100.0 3E-39 6.4E-44 330.9 21.8 194 377-587 3-200 (207)
282 TIGR01189 ccmA heme ABC export 100.0 2.3E-39 4.9E-44 329.4 20.1 192 377-583 1-196 (198)
283 COG0444 DppD ABC-type dipeptid 100.0 3.4E-39 7.3E-44 338.4 21.8 225 377-609 2-252 (316)
284 PRK15134 microcin C ABC transp 100.0 1.9E-39 4.1E-44 377.3 21.7 219 376-602 275-516 (529)
285 TIGR00955 3a01204 The Eye Pigm 100.0 1.1E-39 2.3E-44 384.8 19.8 217 376-601 17-256 (617)
286 COG0411 LivG ABC-type branched 100.0 1.4E-39 2.9E-44 328.0 17.2 220 377-603 5-241 (250)
287 COG4619 ABC-type uncharacteriz 100.0 1.1E-39 2.4E-44 308.3 15.5 195 386-590 11-212 (223)
288 PRK10261 glutathione transport 100.0 2.6E-39 5.7E-44 381.9 22.2 219 376-602 12-259 (623)
289 PLN03211 ABC transporter G-25; 100.0 1.3E-39 2.9E-44 384.3 19.4 201 392-601 82-296 (659)
290 PRK13543 cytochrome c biogenes 100.0 6.7E-39 1.4E-43 330.0 22.0 196 376-587 11-212 (214)
291 TIGR02633 xylG D-xylose ABC tr 100.0 4.5E-39 9.8E-44 371.8 23.1 215 377-600 2-229 (500)
292 PRK15134 microcin C ABC transp 100.0 5.5E-39 1.2E-43 373.4 23.2 219 376-602 5-247 (529)
293 COG1123 ATPase components of v 100.0 5.9E-39 1.3E-43 359.2 22.1 225 376-609 5-253 (539)
294 COG1137 YhbG ABC-type (unclass 100.0 5.1E-40 1.1E-44 319.4 11.5 223 375-602 3-229 (243)
295 TIGR03269 met_CoM_red_A2 methy 100.0 6E-39 1.3E-43 372.5 22.1 220 376-601 279-517 (520)
296 TIGR02324 CP_lyasePhnL phospho 100.0 1E-38 2.2E-43 330.8 20.2 199 377-585 2-222 (224)
297 PRK10535 macrolide transporter 100.0 1.1E-38 2.4E-43 377.9 23.2 218 376-600 4-231 (648)
298 TIGR03269 met_CoM_red_A2 methy 100.0 8.7E-39 1.9E-43 371.1 21.4 212 377-601 1-258 (520)
299 TIGR03771 anch_rpt_ABC anchore 100.0 1E-38 2.2E-43 330.7 19.2 187 399-602 1-202 (223)
300 COG4608 AppF ABC-type oligopep 100.0 9E-39 1.9E-43 328.7 18.6 192 377-609 5-208 (268)
301 PRK13541 cytochrome c biogenes 100.0 1.3E-38 2.9E-43 323.0 19.5 189 377-583 2-193 (195)
302 PRK13546 teichoic acids export 100.0 3.1E-38 6.8E-43 334.6 21.9 211 376-610 4-241 (264)
303 TIGR01166 cbiO cobalt transpor 100.0 1.7E-38 3.6E-43 320.9 18.6 173 392-575 6-189 (190)
304 COG4598 HisP ABC-type histidin 100.0 1.4E-38 3E-43 303.7 16.6 217 376-602 6-242 (256)
305 PRK13549 xylose transporter AT 100.0 1.5E-38 3.4E-43 367.7 20.6 218 376-600 259-493 (506)
306 COG4181 Predicted ABC-type tra 100.0 1.7E-38 3.8E-43 301.1 16.1 210 376-593 6-227 (228)
307 KOG0060 Long-chain acyl-CoA tr 100.0 2.2E-35 4.8E-40 324.7 42.9 420 157-587 186-641 (659)
308 TIGR01257 rim_protein retinal- 100.0 7.3E-38 1.6E-42 395.9 26.3 216 375-602 927-1150(2272)
309 PRK13545 tagH teichoic acids e 100.0 1.3E-37 2.8E-42 349.8 25.4 211 376-610 21-241 (549)
310 COG4172 ABC-type uncharacteriz 100.0 7.5E-38 1.6E-42 331.0 22.1 222 376-608 276-524 (534)
311 TIGR01257 rim_protein retinal- 100.0 9.2E-36 2E-40 377.0 45.0 216 376-603 1937-2161(2272)
312 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.7E-38 1E-42 326.0 19.8 197 377-594 23-224 (224)
313 PRK09700 D-allose transporter 100.0 5E-38 1.1E-42 363.9 20.8 212 376-598 265-495 (510)
314 COG4525 TauB ABC-type taurine 100.0 5.9E-38 1.3E-42 303.4 17.6 211 377-597 4-220 (259)
315 COG4559 ABC-type hemin transpo 100.0 1.8E-37 3.9E-42 304.2 20.8 213 377-602 2-231 (259)
316 TIGR02633 xylG D-xylose ABC tr 100.0 1.4E-37 3E-42 359.5 21.4 216 376-598 257-489 (500)
317 COG1129 MglA ABC-type sugar tr 100.0 3.7E-37 8E-42 342.7 23.0 209 376-595 8-228 (500)
318 TIGR01187 potA spermidine/putr 100.0 1.5E-37 3.2E-42 339.2 19.3 181 409-602 1-191 (325)
319 TIGR00956 3a01205 Pleiotropic 100.0 1.3E-37 2.7E-42 393.5 21.4 213 376-599 759-991 (1394)
320 PRK10762 D-ribose transporter 100.0 2.3E-37 5E-42 357.5 21.1 210 376-599 257-482 (501)
321 COG4161 ArtP ABC-type arginine 100.0 2.3E-37 5.1E-42 290.4 16.6 212 376-600 2-229 (242)
322 PRK15064 ABC transporter ATP-b 100.0 5.1E-37 1.1E-41 357.0 21.8 208 377-601 2-242 (530)
323 PRK11288 araG L-arabinose tran 100.0 3.1E-37 6.8E-42 356.4 19.6 212 376-600 257-484 (501)
324 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.7E-37 1.9E-41 356.5 23.2 209 376-601 4-248 (552)
325 PRK11819 putative ABC transpor 100.0 8.2E-37 1.8E-41 356.8 23.0 209 376-601 6-250 (556)
326 PRK15064 ABC transporter ATP-b 100.0 9.5E-37 2.1E-41 354.7 23.0 204 376-604 319-528 (530)
327 PRK15177 Vi polysaccharide exp 100.0 6.6E-37 1.4E-41 314.9 18.4 191 393-606 2-197 (213)
328 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.8E-37 1E-41 323.8 16.8 201 380-594 4-220 (255)
329 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.1E-36 2.4E-41 294.0 17.5 143 377-589 1-144 (144)
330 COG4148 ModC ABC-type molybdat 100.0 5.3E-37 1.1E-41 311.6 15.5 197 396-603 16-220 (352)
331 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.5E-36 3.2E-41 318.7 19.6 194 384-601 1-207 (246)
332 PRK15439 autoinducer 2 ABC tra 100.0 1.6E-36 3.5E-41 351.0 20.0 212 376-601 268-492 (510)
333 COG3845 ABC-type uncharacteriz 100.0 3.1E-36 6.7E-41 328.5 20.4 211 376-595 4-223 (501)
334 PRK10938 putative molybdenum t 100.0 3.3E-36 7.2E-41 347.2 19.6 205 376-593 260-484 (490)
335 PRK10982 galactose/methyl gala 100.0 9.6E-36 2.1E-40 343.3 22.3 212 376-598 250-477 (491)
336 COG4604 CeuD ABC-type enteroch 100.0 1.4E-36 3.1E-41 294.5 12.5 213 377-602 2-226 (252)
337 cd00267 ABC_ATPase ABC (ATP-bi 100.0 4E-35 8.7E-40 287.1 19.0 155 378-589 1-157 (157)
338 PLN03140 ABC transporter G fam 100.0 1.1E-34 2.4E-39 365.6 25.6 214 375-598 866-1107(1470)
339 PRK11819 putative ABC transpor 100.0 1.2E-34 2.5E-39 338.7 22.6 201 376-602 324-534 (556)
340 cd03222 ABC_RNaseL_inhibitor T 100.0 4.5E-35 9.8E-40 291.4 16.1 147 380-593 4-153 (177)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-34 3.8E-39 337.1 22.8 200 376-601 322-531 (552)
342 PLN03073 ABC transporter F fam 100.0 1.9E-34 4.1E-39 342.5 22.8 199 376-599 508-712 (718)
343 PRK11147 ABC transporter ATPas 100.0 2.5E-34 5.5E-39 340.5 22.5 200 376-600 319-527 (635)
344 PRK10636 putative ABC transpor 100.0 2.2E-34 4.8E-39 340.4 21.8 200 376-600 312-516 (638)
345 PRK13409 putative ATPase RIL; 100.0 4.7E-34 1E-38 333.4 20.9 193 376-596 340-537 (590)
346 cd03238 ABC_UvrA The excision 100.0 6.7E-34 1.5E-38 282.7 18.2 154 392-589 9-165 (176)
347 COG4172 ABC-type uncharacteriz 100.0 8.4E-34 1.8E-38 300.3 19.0 226 377-610 7-257 (534)
348 COG1101 PhnK ABC-type uncharac 100.0 7.7E-34 1.7E-38 279.2 17.3 205 391-595 19-232 (263)
349 COG1119 ModF ABC-type molybden 100.0 1.1E-33 2.3E-38 285.2 18.8 210 376-595 31-256 (257)
350 TIGR00956 3a01205 Pleiotropic 100.0 5.6E-34 1.2E-38 360.4 20.1 206 393-601 76-300 (1394)
351 PRK10636 putative ABC transpor 100.0 2E-33 4.4E-38 332.3 22.6 208 377-601 2-236 (638)
352 COG4152 ABC-type uncharacteriz 100.0 2.3E-33 5E-38 280.5 14.3 216 376-604 2-222 (300)
353 PRK11147 ABC transporter ATPas 100.0 1.4E-32 3E-37 325.7 22.4 206 377-601 4-243 (635)
354 PLN03140 ABC transporter G fam 100.0 2.2E-33 4.9E-38 353.8 16.4 206 393-601 180-427 (1470)
355 COG4167 SapF ABC-type antimicr 100.0 1.6E-32 3.5E-37 262.8 16.3 210 393-613 28-253 (267)
356 COG4136 ABC-type uncharacteriz 100.0 2.1E-32 4.6E-37 254.4 14.9 193 376-583 2-205 (213)
357 PRK13409 putative ATPase RIL; 100.0 9.7E-33 2.1E-37 322.3 15.4 193 380-588 77-287 (590)
358 PF00005 ABC_tran: ABC transpo 100.0 1.5E-32 3.2E-37 262.2 12.4 136 394-543 1-137 (137)
359 COG1134 TagH ABC-type polysacc 100.0 1.2E-31 2.5E-36 271.0 19.3 185 393-601 42-236 (249)
360 KOG0061 Transporter, ABC super 100.0 4.3E-32 9.3E-37 317.6 18.5 219 375-601 24-260 (613)
361 PLN03073 ABC transporter F fam 100.0 6.3E-32 1.4E-36 321.0 20.1 221 375-601 176-431 (718)
362 COG0488 Uup ATPase components 100.0 4.1E-31 8.9E-36 301.6 20.4 209 376-602 3-241 (530)
363 COG0396 sufC Cysteine desulfur 100.0 1.2E-30 2.7E-35 260.1 21.0 223 376-609 3-243 (251)
364 COG4674 Uncharacterized ABC-ty 100.0 2.4E-31 5.1E-36 257.8 14.8 214 376-602 5-236 (249)
365 cd03270 ABC_UvrA_I The excisio 100.0 3.3E-30 7.2E-35 267.5 17.0 191 391-594 8-226 (226)
366 KOG0064 Peroxisomal long-chain 100.0 2.6E-27 5.7E-32 257.5 40.0 401 157-578 221-674 (728)
367 COG4586 ABC-type uncharacteriz 100.0 2.2E-30 4.9E-35 263.0 13.2 210 392-609 38-254 (325)
368 cd03271 ABC_UvrA_II The excisi 100.0 4.9E-30 1.1E-34 269.8 14.4 193 393-596 10-261 (261)
369 COG4107 PhnK ABC-type phosphon 100.0 3.6E-29 7.8E-34 238.1 17.3 225 376-610 6-251 (258)
370 COG0488 Uup ATPase components 100.0 4.1E-28 8.9E-33 277.0 24.2 202 376-602 321-526 (530)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 3.3E-29 7.1E-34 254.4 12.5 164 395-587 14-190 (197)
372 COG4133 CcmA ABC-type transpor 100.0 1.6E-28 3.5E-33 237.8 13.3 188 378-579 4-196 (209)
373 PF00664 ABC_membrane: ABC tra 100.0 3.8E-25 8.2E-30 230.7 39.8 272 53-328 2-274 (275)
374 cd03279 ABC_sbcCD SbcCD and ot 100.0 1.7E-28 3.8E-33 252.4 10.3 192 376-590 5-211 (213)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 4.9E-28 1.1E-32 253.9 12.5 192 376-586 3-234 (243)
376 KOG0059 Lipid exporter ABCA1 a 99.9 3.9E-27 8.5E-32 287.1 17.5 221 375-607 563-793 (885)
377 COG4778 PhnL ABC-type phosphon 99.9 1.5E-27 3.3E-32 226.4 10.2 201 377-586 5-226 (235)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.5E-26 3.3E-31 244.0 11.7 181 404-586 25-242 (251)
379 cd03240 ABC_Rad50 The catalyti 99.9 4.5E-26 9.8E-31 232.7 11.9 163 397-587 16-197 (204)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.8E-26 4E-31 236.9 8.6 185 376-587 5-204 (212)
381 PRK00635 excinuclease ABC subu 99.9 7.9E-25 1.7E-29 274.1 22.2 213 376-603 600-908 (1809)
382 PRK00349 uvrA excinuclease ABC 99.9 4.7E-25 1E-29 266.1 18.3 104 503-606 818-932 (943)
383 COG1129 MglA ABC-type sugar tr 99.9 8.9E-25 1.9E-29 243.9 18.6 212 377-598 264-487 (500)
384 COG4138 BtuD ABC-type cobalami 99.9 9.5E-26 2.1E-30 215.1 7.1 208 377-602 4-222 (248)
385 KOG0927 Predicted transporter 99.9 3.1E-25 6.7E-30 243.4 10.2 193 376-592 389-586 (614)
386 KOG0065 Pleiotropic drug resis 99.9 4.4E-25 9.5E-30 263.6 12.3 198 392-599 805-1019(1391)
387 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.3E-24 2.9E-29 228.7 9.4 183 405-587 23-233 (247)
388 TIGR00630 uvra excinuclease AB 99.9 4.3E-23 9.3E-28 248.8 21.6 97 503-599 816-923 (924)
389 COG3845 ABC-type uncharacteriz 99.9 1.2E-22 2.6E-27 222.4 19.7 216 376-598 257-489 (501)
390 KOG0927 Predicted transporter 99.9 7.2E-22 1.6E-26 217.1 15.9 217 373-602 72-310 (614)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.9 4.2E-22 9.1E-27 202.5 12.0 172 394-589 12-192 (198)
392 KOG0062 ATPase component of AB 99.9 1.9E-21 4.1E-26 212.8 14.3 194 375-592 361-559 (582)
393 cd03239 ABC_SMC_head The struc 99.9 3.9E-21 8.4E-26 192.1 13.0 85 497-587 83-172 (178)
394 KOG0062 ATPase component of AB 99.9 8.8E-22 1.9E-26 215.3 8.6 200 374-602 78-286 (582)
395 cd01128 rho_factor Transcripti 99.8 2.2E-21 4.7E-26 203.0 7.6 198 399-614 11-230 (249)
396 COG1245 Predicted ATPase, RNas 99.8 4.3E-20 9.3E-25 199.2 14.0 181 381-587 340-531 (591)
397 KOG0066 eIF2-interacting prote 99.8 4.8E-20 1E-24 196.7 13.5 189 377-590 587-779 (807)
398 COG4170 SapD ABC-type antimicr 99.8 6E-20 1.3E-24 180.0 11.7 206 392-608 21-256 (330)
399 cd03241 ABC_RecN RecN ATPase i 99.8 1.8E-19 3.9E-24 192.7 14.6 76 514-589 170-249 (276)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1.2E-19 2.7E-24 186.4 11.8 180 395-589 15-211 (213)
401 COG0178 UvrA Excinuclease ATPa 99.8 4.4E-19 9.6E-24 203.0 16.2 102 507-608 815-926 (935)
402 cd03280 ABC_MutS2 MutS2 homolo 99.8 2.2E-19 4.8E-24 183.0 10.8 145 393-593 16-171 (200)
403 KOG0065 Pleiotropic drug resis 99.8 1.9E-19 4E-24 215.9 11.1 204 393-601 130-351 (1391)
404 KOG2355 Predicted ABC-type tra 99.8 1.4E-18 3.1E-23 170.2 14.9 213 374-601 11-237 (291)
405 PRK00635 excinuclease ABC subu 99.8 2.4E-18 5.2E-23 216.4 20.9 210 393-604 1505-1799(1809)
406 COG2401 ABC-type ATPase fused 99.8 4.7E-18 1E-22 181.4 14.2 199 371-591 352-588 (593)
407 cd03227 ABC_Class2 ABC-type Cl 99.7 1E-17 2.2E-22 165.1 12.9 135 398-587 15-155 (162)
408 COG1245 Predicted ATPase, RNas 99.7 5.9E-18 1.3E-22 182.8 11.3 188 381-586 79-287 (591)
409 cd03285 ABC_MSH2_euk MutS2 hom 99.7 3.6E-17 7.9E-22 169.2 11.7 151 392-595 18-175 (222)
410 cd03242 ABC_RecF RecF is a rec 99.7 9.8E-17 2.1E-21 171.1 15.0 190 394-590 12-269 (270)
411 PRK00349 uvrA excinuclease ABC 99.7 1.6E-16 3.5E-21 192.6 13.1 100 503-602 477-586 (943)
412 TIGR00630 uvra excinuclease AB 99.7 1.5E-16 3.2E-21 192.6 11.9 100 503-602 475-584 (924)
413 TIGR00606 rad50 rad50. This fa 99.6 5.2E-16 1.1E-20 197.7 13.6 111 463-578 1153-1275(1311)
414 cd03243 ABC_MutS_homologs The 99.6 4.7E-16 1E-20 158.8 10.3 152 397-598 22-176 (202)
415 cd00820 PEPCK_HprK Phosphoenol 99.6 9.7E-17 2.1E-21 145.2 4.6 75 392-474 3-77 (107)
416 cd03283 ABC_MutS-like MutS-lik 99.6 3.3E-16 7.1E-21 159.4 8.1 137 392-579 15-154 (199)
417 TIGR02858 spore_III_AA stage I 99.6 3E-15 6.5E-20 158.6 12.7 142 405-600 112-268 (270)
418 PRK00064 recF recombination pr 99.5 1.3E-13 2.8E-18 152.9 17.3 76 513-590 272-359 (361)
419 cd03282 ABC_MSH4_euk MutS4 hom 99.5 4.6E-14 9.9E-19 144.1 11.1 138 392-579 17-157 (204)
420 cd03284 ABC_MutS1 MutS1 homolo 99.5 3.1E-14 6.6E-19 146.8 8.1 154 392-599 19-179 (216)
421 PF02463 SMC_N: RecF/RecN/SMC 99.5 1.4E-13 3.1E-18 142.2 11.7 73 514-586 136-212 (220)
422 PHA02562 46 endonuclease subun 99.5 4.4E-14 9.5E-19 166.2 8.6 106 483-590 432-555 (562)
423 KOG0066 eIF2-interacting prote 99.5 3.7E-14 8.1E-19 152.1 6.1 211 376-598 264-496 (807)
424 KOG0063 RNAse L inhibitor, ABC 99.4 1.4E-12 3.1E-17 140.3 11.7 181 384-587 343-532 (592)
425 PRK07721 fliI flagellum-specif 99.3 1.5E-11 3.3E-16 138.5 16.8 174 393-597 148-339 (438)
426 PTZ00132 GTP-binding nuclear p 99.3 4E-12 8.6E-17 130.9 7.8 144 406-561 11-204 (215)
427 TIGR00634 recN DNA repair prot 99.3 8.2E-12 1.8E-16 146.5 10.0 77 513-589 439-519 (563)
428 cd03281 ABC_MSH5_euk MutS5 hom 99.3 1.8E-11 3.8E-16 126.1 10.9 134 393-579 18-160 (213)
429 smart00534 MUTSac ATPase domai 99.3 1E-11 2.2E-16 125.1 8.7 79 509-590 56-139 (185)
430 PRK10869 recombination and rep 99.3 1.4E-11 2.9E-16 143.7 10.0 76 514-589 430-509 (553)
431 TIGR01069 mutS2 MutS2 family p 99.2 4.6E-11 1E-15 143.7 13.4 148 375-575 294-447 (771)
432 PRK13695 putative NTPase; Prov 99.2 2.1E-11 4.6E-16 121.5 6.8 82 509-593 73-156 (174)
433 PRK14079 recF recombination pr 99.2 2.7E-10 5.9E-15 125.9 15.9 77 513-594 262-347 (349)
434 COG0178 UvrA Excinuclease ATPa 99.2 1.5E-10 3.3E-15 133.8 12.0 109 494-603 462-579 (935)
435 PRK08533 flagellar accessory p 99.1 6.6E-10 1.4E-14 115.8 14.6 158 377-586 8-184 (230)
436 TIGR02788 VirB11 P-type DNA tr 99.1 8.8E-11 1.9E-15 127.7 7.6 143 397-600 137-280 (308)
437 KOG0063 RNAse L inhibitor, ABC 99.1 2.3E-10 5E-15 123.6 9.0 171 402-586 98-287 (592)
438 cd03287 ABC_MSH3_euk MutS3 hom 99.1 3.6E-10 7.7E-15 116.9 9.0 137 392-579 19-160 (222)
439 PRK00409 recombination and DNA 99.1 8.2E-10 1.8E-14 133.4 12.8 148 393-591 317-468 (782)
440 cd01124 KaiC KaiC is a circadi 99.0 1.9E-09 4.1E-14 108.1 12.4 85 503-587 60-164 (187)
441 PRK01156 chromosome segregatio 99.0 5.6E-10 1.2E-14 138.5 10.2 76 511-586 798-883 (895)
442 TIGR03238 dnd_assoc_3 dnd syst 99.0 2.2E-10 4.9E-15 127.8 5.6 66 393-461 21-87 (504)
443 PRK03918 chromosome segregatio 99.0 6.7E-10 1.5E-14 137.7 9.6 75 513-587 787-868 (880)
444 PRK10733 hflB ATP-dependent me 99.0 7.4E-11 1.6E-15 140.2 0.5 174 221-429 29-210 (644)
445 TIGR02168 SMC_prok_B chromosom 99.0 7.3E-10 1.6E-14 141.2 8.2 75 511-585 1086-1164(1179)
446 TIGR00618 sbcc exonuclease Sbc 99.0 1.3E-09 2.8E-14 136.9 10.2 77 512-588 948-1036(1042)
447 PRK13830 conjugal transfer pro 99.0 1.9E-09 4.2E-14 131.4 11.2 68 529-596 649-728 (818)
448 cd01131 PilT Pilus retraction 99.0 1.3E-09 2.8E-14 111.0 7.8 119 406-586 3-122 (198)
449 TIGR00767 rho transcription te 98.9 2.3E-09 4.9E-14 118.0 9.7 83 341-431 102-195 (415)
450 cd01120 RecA-like_NTPases RecA 98.9 9E-09 2E-13 99.8 12.6 129 406-576 1-140 (165)
451 TIGR02169 SMC_prok_A chromosom 98.9 2.9E-09 6.4E-14 135.7 8.7 75 513-587 1073-1151(1164)
452 PRK00300 gmk guanylate kinase; 98.9 3.7E-09 8.1E-14 107.9 7.8 69 402-476 3-83 (205)
453 PF06472 ABC_membrane_2: ABC t 98.9 1.1E-05 2.4E-10 86.7 34.7 221 57-284 34-258 (281)
454 smart00382 AAA ATPases associa 98.9 6.5E-08 1.4E-12 90.4 14.9 117 403-572 1-125 (148)
455 PRK06793 fliI flagellum-specif 98.8 1.3E-08 2.8E-13 114.2 11.0 168 376-595 130-305 (432)
456 PRK11098 microcin B17 transpor 98.8 6.8E-05 1.5E-09 83.9 39.5 191 156-355 191-395 (409)
457 PRK12369 putative transporter; 98.8 9E-05 2E-09 81.1 39.6 192 157-355 118-321 (326)
458 PRK06067 flagellar accessory p 98.7 9.4E-08 2E-12 99.9 13.5 140 400-575 21-167 (234)
459 PF13304 AAA_21: AAA domain; P 98.7 1.5E-08 3.3E-13 104.7 7.4 64 513-576 235-302 (303)
460 cd03286 ABC_MSH6_euk MutS6 hom 98.7 5.6E-08 1.2E-12 100.3 10.9 130 392-579 18-159 (218)
461 PRK02224 chromosome segregatio 98.7 2E-08 4.4E-13 124.5 9.1 76 513-588 780-869 (880)
462 PRK10246 exonuclease subunit S 98.7 2.9E-08 6.2E-13 124.4 9.5 77 511-587 946-1032(1047)
463 PF13748 ABC_membrane_3: ABC t 98.7 6.5E-05 1.4E-09 76.9 30.9 212 52-296 12-223 (237)
464 PRK06002 fliI flagellum-specif 98.6 9.2E-08 2E-12 107.5 7.4 86 374-461 137-229 (450)
465 PF09818 ABC_ATPase: Predicted 98.5 9.2E-07 2E-11 97.8 12.9 171 382-590 227-416 (448)
466 PRK01889 GTPase RsgA; Reviewed 98.5 9.3E-08 2E-12 106.0 4.9 134 393-532 184-321 (356)
467 PRK13891 conjugal transfer pro 98.5 1.7E-06 3.7E-11 106.3 15.7 54 525-578 680-735 (852)
468 KOG0058 Peptide exporter, ABC 98.5 1.3E-06 2.7E-11 101.4 13.4 111 668-780 134-244 (716)
469 PRK07196 fliI flagellum-specif 98.5 1.2E-07 2.5E-12 106.6 4.7 80 393-473 145-234 (434)
470 cd01125 repA Hexameric Replica 98.4 4.6E-07 9.9E-12 95.1 8.5 46 528-574 107-160 (239)
471 TIGR02655 circ_KaiC circadian 98.4 6.4E-08 1.4E-12 111.8 2.1 156 400-586 17-190 (484)
472 TIGR01420 pilT_fam pilus retra 98.4 5.1E-07 1.1E-11 99.8 8.8 123 401-585 119-242 (343)
473 TIGR00611 recf recF protein. A 98.4 2.6E-07 5.7E-12 102.8 6.5 63 513-577 274-345 (365)
474 cd01130 VirB11-like_ATPase Typ 98.4 2.7E-07 5.8E-12 93.1 6.0 79 393-474 14-95 (186)
475 PRK06995 flhF flagellar biosyn 98.4 3.5E-07 7.6E-12 104.1 6.5 142 396-572 248-401 (484)
476 PRK10078 ribose 1,5-bisphospho 98.4 1.6E-06 3.4E-11 87.4 9.6 55 404-461 2-56 (186)
477 TIGR00101 ureG urease accessor 98.3 1.2E-06 2.6E-11 89.3 8.0 106 406-519 3-108 (199)
478 COG3910 Predicted ATPase [Gene 98.3 8.1E-06 1.8E-10 80.4 12.6 85 513-599 128-214 (233)
479 TIGR02524 dot_icm_DotB Dot/Icm 98.3 8.8E-07 1.9E-11 98.1 6.5 88 402-491 132-234 (358)
480 PRK08149 ATP synthase SpaL; Va 98.2 1.1E-06 2.4E-11 98.7 5.5 68 392-460 140-214 (428)
481 PRK09825 idnK D-gluconate kina 98.2 1.4E-06 3.1E-11 87.0 5.7 66 403-474 2-69 (176)
482 TIGR03881 KaiC_arch_4 KaiC dom 98.2 2.1E-06 4.6E-11 89.3 7.1 57 400-460 16-76 (229)
483 TIGR01026 fliI_yscN ATPase Fli 98.2 1.2E-05 2.6E-10 91.2 12.2 181 392-597 152-344 (440)
484 TIGR02680 conserved hypothetic 98.2 2.7E-06 5.9E-11 109.1 7.8 61 511-573 1244-1316(1353)
485 PRK13898 type IV secretion sys 98.2 2.2E-05 4.7E-10 96.5 15.0 60 528-587 638-709 (800)
486 PLN02796 D-glycerate 3-kinase 98.1 1.2E-06 2.6E-11 95.3 3.3 61 392-452 80-151 (347)
487 cd02023 UMPK Uridine monophosp 98.1 2.1E-06 4.5E-11 87.4 4.7 107 406-547 1-113 (198)
488 TIGR03263 guanyl_kin guanylate 98.1 2.2E-06 4.8E-11 85.6 4.4 77 404-489 1-89 (180)
489 PLN03210 Resistant to P. syrin 98.1 8.5E-06 1.9E-10 103.8 10.6 45 396-440 199-244 (1153)
490 PRK15494 era GTPase Era; Provi 98.1 2.3E-06 5E-11 94.5 4.7 57 370-427 12-75 (339)
491 TIGR00235 udk uridine kinase. 98.1 2.4E-06 5.3E-11 87.6 3.8 29 402-430 4-32 (207)
492 cd00071 GMPK Guanosine monopho 98.1 1.4E-06 3E-11 83.4 1.7 74 406-488 1-87 (137)
493 COG0419 SbcC ATPase involved i 98.1 9.3E-06 2E-10 101.0 9.1 78 511-588 812-898 (908)
494 TIGR02322 phosphon_PhnN phosph 98.0 8.3E-06 1.8E-10 81.4 6.9 61 404-465 1-77 (179)
495 cd00009 AAA The AAA+ (ATPases 98.0 1.2E-05 2.6E-10 75.7 7.5 54 520-574 72-131 (151)
496 PRK09183 transposase/IS protei 98.0 2.7E-05 5.8E-10 82.8 9.8 50 379-429 74-127 (259)
497 PRK00454 engB GTP-binding prot 98.0 1E-05 2.2E-10 81.5 6.3 52 507-562 140-194 (196)
498 cd01123 Rad51_DMC1_radA Rad51_ 98.0 3.7E-05 8E-10 80.2 10.4 78 401-485 16-100 (235)
499 PRK06315 type III secretion sy 98.0 7E-06 1.5E-10 92.7 5.0 81 393-474 154-252 (442)
500 cd01876 YihA_EngB The YihA (En 98.0 1.9E-05 4.2E-10 76.4 7.4 51 506-560 114-169 (170)
No 1
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-140 Score=1244.63 Aligned_cols=742 Identities=48% Similarity=0.805 Sum_probs=669.4
Q ss_pred cchHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003976 34 SGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAW 113 (782)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~ 113 (782)
..++.+||+|+++.|+.++.+|++++++.|+..|++.+++|+++|.+.... +. ...+.+..+++++++++++.++..|
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~-~~-~~~~~~~~~~l~~~~lg~~~~~~~~ 89 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNT-NK-IASSEVSKVALYFVYLGVGVFISGF 89 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhcc-ch-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999986533 12 2235778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 114 IGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFT 193 (782)
Q Consensus 114 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~ 193 (782)
++..||.+.++|+..++|.++++++|||+++|||.+ .+|++.+|+++|++.++++++++++.+++.+.+++++++++|+
T Consensus 90 ~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 90 IQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999995 7799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 003976 194 SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGK 273 (782)
Q Consensus 194 ~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~ 273 (782)
+.|+|+++++.+.|++++.+..+.+.+.+...++++++++++++++|+++++|||.+|+.|+++.++|.+.++...+.+.
T Consensus 169 ~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi 248 (1228)
T KOG0055|consen 169 YGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGI 248 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 274 KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISII 353 (782)
Q Consensus 274 k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l 353 (782)
+.+.+.|+..++.+++.+.++++.+|||+.++.++..++|++++++++++.+...+++..|++..+.+|++|+.+|++++
T Consensus 249 ~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i 328 (1228)
T KOG0055|consen 249 KKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETI 328 (1228)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCc-ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCc
Q 003976 354 KENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432 (782)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~-vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~ 432 (782)
++.|.+ ++....+......+|+|+|+||+|+||+||+. +|+|+||+||+|++|||||||||||||+++||+|||+|++
T Consensus 329 ~~~~~i-~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~ 407 (1228)
T KOG0055|consen 329 DRKPSI-DPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS 407 (1228)
T ss_pred cCCCCC-CcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 999887 44433344556678999999999999999876 9999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCC
Q 003976 433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512 (782)
Q Consensus 433 G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G 512 (782)
|+|+|||.|+++++.+|||++||+|+|||.||++||+|||+||+|++|++++++|||.|++++||..||+||||.|||+|
T Consensus 408 G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g 487 (1228)
T KOG0055|consen 408 GEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERG 487 (1228)
T ss_pred ceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEE
Q 003976 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 592 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive 592 (782)
.+|||||||||||||||++||+||||||||||||+++|+.||++|+++++|||+|+||||||||++||+|+||++|+|||
T Consensus 488 ~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 488 VQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVE 567 (1228)
T ss_pred CCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhhcCchhHHHHHhhhcccCCCC-C---Cccc-CCCCCCCCCCCCCCCcCccchhh---hhhhhhhccCCCCCC
Q 003976 593 SGTHVDLISKGGEYAALVNLQSSEHLSNP-S---SICY-SGSSRYSSFRDFPSSRRYDVEFE---SSKRRELQSSDQSFA 664 (782)
Q Consensus 593 ~G~~~eL~~~~~~y~~l~~~~~~~~~~~~-~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 664 (782)
+|+|+||++.+|.|.+|++.|+....++. + +... .......+............... ..+.++..+......
T Consensus 568 ~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 647 (1228)
T KOG0055|consen 568 QGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEED 647 (1228)
T ss_pred ecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccccccccccccccccc
Confidence 99999999999999999999865543221 0 0000 00000000000000000000000 000000000001111
Q ss_pred CCccHHHHHHHcccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 003976 665 PSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQ 744 (782)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 744 (782)
.+.++++++++++|+|+|+++|++++++.|+.+|+|++.++++++.|..+++++++++...|+++|+++|++++++++++
T Consensus 648 ~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q 727 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQ 727 (1228)
T ss_pred ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999977767777777779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccC
Q 003976 745 HYFYTLMGEHLTARVRLSMFSGSFIFSFQFYILNA 779 (782)
Q Consensus 745 ~~~~~~~~~~~~~~lr~~~f~~il~~~~~fFd~nr 779 (782)
+|+|+++||+|++|+|.++|++++|||++|||.++
T Consensus 728 ~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ 762 (1228)
T KOG0055|consen 728 HYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPE 762 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCc
Confidence 99999999999999999999999999999999865
No 2
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-124 Score=1054.36 Aligned_cols=572 Identities=40% Similarity=0.614 Sum_probs=540.4
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 36 SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIG 115 (782)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~ 115 (782)
.+++|+.|+++. ++++..+.++.++..+...+.|.+.|+++|.+.... +....+...+..+.++.++..++++++
T Consensus 134 ~~~rl~~l~~~~-~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~----~~~~~~~~~~~~l~~l~~~~a~~~~~r 208 (716)
T KOG0058|consen 134 LLKRLLGLLKPE-WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGD----DSADALKRACTILLGLFLIGALANAIR 208 (716)
T ss_pred HHHHHHHHhchh-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999875 667788888888888888889999999999976411 124455667777888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 116 VAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSV 195 (782)
Q Consensus 116 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~ 195 (782)
.+++.++++++..+||.++|+++++|+++|||. +++||+++|+++|++.+.+.++..+...+++.++.++++++||++|
T Consensus 209 ~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S 287 (716)
T KOG0058|consen 209 GGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLS 287 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 999999999999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 003976 196 WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKS 275 (782)
Q Consensus 196 w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~ 275 (782)
|+|++++++.+|+++++..++++..++..++.|++.++++.+++|.+++|||||+|+.|+.|.+||.+..++..+...|.
T Consensus 288 ~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~ 367 (716)
T KOG0058|consen 288 WRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKE 367 (716)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003976 276 GVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKE 355 (782)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~ 355 (782)
+...+..++...+...+..+.++|||++++..|.+|.|.+.++++|......++..+...++.+.++..|.+|+++++|+
T Consensus 368 a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 368 AVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 99999999998999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCc-ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccE
Q 003976 356 NSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434 (782)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~-vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~ 434 (782)
+|.. +. .....|...+|.|+|+||+|+||.||+. ||+|+||+|+|||+||+||||||||||+++||+|||+|++|+
T Consensus 448 ~P~i-~~--~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~ 524 (716)
T KOG0058|consen 448 KPRI-PL--TGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR 524 (716)
T ss_pred CCCC-CC--CCccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence 9987 22 2222333678999999999999999876 999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCC
Q 003976 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514 (782)
Q Consensus 435 I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~ 514 (782)
|++||+||+++|.+|||++||+|.|||.||++||+|||+||.+++++|||+.||+.|++|+||.++|+||||.|||+|.+
T Consensus 525 IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~q 604 (716)
T KOG0058|consen 525 ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQ 604 (716)
T ss_pred EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEec
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G 594 (782)
|||||||||||||||+|||.||||||||||||+++|..||++|++.+++||+|+|||||||+++||+|+|+++|+|+|.|
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhhcC-chhHHHHHhhhcc
Q 003976 595 THVDLISKG-GEYAALVNLQSSE 616 (782)
Q Consensus 595 ~~~eL~~~~-~~y~~l~~~~~~~ 616 (782)
+|+||+++. |.|++|++.|...
T Consensus 685 ~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 685 THDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred cHHHHhhCcccHHHHHHHHhccc
Confidence 999999986 8999999888643
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.8e-122 Score=1090.82 Aligned_cols=578 Identities=43% Similarity=0.725 Sum_probs=550.6
Q ss_pred ccchHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 003976 33 QSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSA 112 (782)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~ 112 (782)
.+.++++++++.+| +|+++++|++++++.|+..|++.+++++++..+... +++........+++++++++++.+++.
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~--~~~~~~~~~~~~al~f~~l~~~~~i~~ 724 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPP--DDDELKREVRAWALIFLGLGIVSGITN 724 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999999887 688999999999999999999999999999998632 222334444458999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 113 WIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGF 192 (782)
Q Consensus 113 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~ 192 (782)
+++++++.+.+++++.|+|.+.|++++++|++|||...++|.+.+|+.+|...++..+++.+..+++++..++++++++|
T Consensus 725 ~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf 804 (1228)
T KOG0055|consen 725 FLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF 804 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865669999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 003976 193 TSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQG 272 (782)
Q Consensus 193 ~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~ 272 (782)
+++|+|+++++++.|++++..+...+.+.....+..+.+++++.++.|+++|||||++|+.|+++.+.|.+.+++..+..
T Consensus 805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 273 KKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 352 (782)
Q Consensus 273 ~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~ 352 (782)
.|++.+.|+.+++.+++.++.+++.||||++++.+|.+++.+++.+++.+.+....+++.....+++.+|+.|+.+++++
T Consensus 885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i 964 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEI 964 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCc-ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC
Q 003976 353 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 431 (782)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~-vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~ 431 (782)
+|++|++ |+..+.+...++.+|+|+|+||+|+||+||+. ||+|+||+|++||++||||||||||||++.||.|||||+
T Consensus 965 ~dr~~~i-~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~ 1043 (1228)
T KOG0055|consen 965 LDRKPTI-DPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD 1043 (1228)
T ss_pred hcCCCCC-CCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 9999987 44333444567789999999999999999987 999999999999999999999999999999999999999
Q ss_pred ccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCC
Q 003976 432 SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511 (782)
Q Consensus 432 ~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~ 511 (782)
+|.|.|||+||++++++|||++||+|+|||.||++||||||+||.++++++||.+|||.||+|+||.+||+||||.|||+
T Consensus 1044 ~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGer 1123 (1228)
T KOG0055|consen 1044 AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGER 1123 (1228)
T ss_pred CCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcc
Confidence 99999999999999999999999999999999999999999999666899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEE
Q 003976 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 591 (782)
Q Consensus 512 G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~iv 591 (782)
|.+||||||||||||||++|||+||||||||||||+++|+.||++|++.+.|||+|+||||||||++||.|+|+++|+|+
T Consensus 1124 G~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~Vv 1203 (1228)
T KOG0055|consen 1124 GVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVV 1203 (1228)
T ss_pred cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhHHhhcCchhHHHHHhhh
Q 003976 592 ESGTHVDLISKGGEYAALVNLQS 614 (782)
Q Consensus 592 e~G~~~eL~~~~~~y~~l~~~~~ 614 (782)
|+|||+||++++|.|.+|++.|.
T Consensus 1204 E~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1204 EQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred ecccHHHHHhCCCchHHHhhhcc
Confidence 99999999999999999998774
No 4
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6e-104 Score=995.06 Aligned_cols=731 Identities=29% Similarity=0.464 Sum_probs=616.4
Q ss_pred ccchHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 003976 33 QSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSA 112 (782)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~ 112 (782)
.+.+++++|+|+.+.++.+++++++++++.+++.|++|+++|+++|.+... +.+..+++++++++++.+++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~--------~~~~~~~~~~~~~~i~~~~~~ 114 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG--------ENVNDIIFSLVLIGIFQFILS 114 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHHHHHHHHHHHHHHHHHHH
Confidence 456799999999998899999999999999999999999999999986421 123334566777788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 113 WIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGF 192 (782)
Q Consensus 113 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~ 192 (782)
+++.+++.++++++..++|.++|+|++++|++|||. .++|++++|+++|++.++++++..+..++..+++++++++++|
T Consensus 115 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~-~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~ 193 (1466)
T PTZ00265 115 FISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN-NPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSL 193 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 4889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 003976 193 TSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQG 272 (782)
Q Consensus 193 ~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~ 272 (782)
+++|+|++++++++|+++++..++.+++++..++.++..+++++.++|+++|+++||+|+.|+.+.++|.+..+...+..
T Consensus 194 ~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~ 273 (1466)
T PTZ00265 194 FKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI 273 (1466)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 273 KKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHG--------DTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKA 344 (782)
Q Consensus 273 ~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g--------~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~ 344 (782)
.+.....++..++..++.++.+++++|+|++++.+| .+++|++++++++.+.....+..+.+.+..++++.+
T Consensus 274 ~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~ 353 (1466)
T PTZ00265 274 LKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE 353 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888888999999999999999986 578999998888877777777888889999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCC-cccccceEEeeCCCEEEEeCCCCCcHHHHHHH
Q 003976 345 AAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGPSGSGKSTIISM 423 (782)
Q Consensus 345 a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~-~vL~~isl~i~~G~~vaivG~sGsGKSTl~~l 423 (782)
|++|+++++++++++ +. ...+...+.. ++|+|+||+|+||++++ ++|+|+||+|++||++|||||||||||||+++
T Consensus 354 a~~ri~~ii~~~~~~-~~-~~~~~~~~~~-~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~l 430 (1466)
T PTZ00265 354 ATNSLYEIINRKPLV-EN-NDDGKKLKDI-KKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKL 430 (1466)
T ss_pred HHHHHHHHHcCCCCC-CC-CCCCccCCCC-CcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 999999999988765 22 1222222222 47999999999997654 49999999999999999999999999999999
Q ss_pred HHcCCCCCccEEEE-CCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCC-------------------------
Q 003976 424 VQRLYEPTSGKILL-DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE------------------------- 477 (782)
Q Consensus 424 l~~~~~~~~G~I~i-~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~------------------------- 477 (782)
|+|+|+|++|+|++ ||+|+++++.+++|++||||+|+|.||++||+|||.+|.+
T Consensus 431 L~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1466)
T PTZ00265 431 IERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNK 510 (1466)
T ss_pred HHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccc
Confidence 99999999999999 6799999999999999999999999999999999999742
Q ss_pred --------------------------------CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHH
Q 003976 478 --------------------------------DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 478 --------------------------------~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiai 525 (782)
+++++++++||+.+++++||.+||+||||.+|++|.+|||||||||+|
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaI 590 (1466)
T PTZ00265 511 RNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISI 590 (1466)
T ss_pred cccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHH
Confidence 246789999999999999999999999999999999999999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhhcCEEEEEeCC---------------
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNG--------------- 588 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl~~G--------------- 588 (782)
|||++++|+|||||||||+||+++|+.|+++|+++. +|+|+|+||||+++++.||+|+||++|
T Consensus 591 ARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~ 670 (1466)
T PTZ00265 591 ARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDP 670 (1466)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccc
Confidence 999999999999999999999999999999999986 489999999999999999999999986
Q ss_pred --------------------------------EEEEecChhHHhh-cCchhHHHHHhhhcccCCCC-C--C-cc---cCC
Q 003976 589 --------------------------------QVVESGTHVDLIS-KGGEYAALVNLQSSEHLSNP-S--S-IC---YSG 628 (782)
Q Consensus 589 --------------------------------~ive~G~~~eL~~-~~~~y~~l~~~~~~~~~~~~-~--~-~~---~~~ 628 (782)
+|+|+|||+||++ .+|.|+.|++.|........ . . .. ...
T Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~ 750 (1466)
T PTZ00265 671 TKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSA 750 (1466)
T ss_pred cccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccc
Confidence 5999999999998 69999999988754321110 0 0 00 000
Q ss_pred -CCCCCCC--CCCCC---CcC-----ccchhh-hhhhhhh-ccCCC---------CCCCCccHHHHHHHcccchHHHHHH
Q 003976 629 -SSRYSSF--RDFPS---SRR-----YDVEFE-SSKRREL-QSSDQ---------SFAPSPSIWELLKLNAAEWPYAVLG 686 (782)
Q Consensus 629 -~~~~~~~--~~~~~---~~~-----~~~~~~-~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~g 686 (782)
....... ..... ... ...... ....++. .+.+. ....+....++++.-++.++.+++|
T Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1466)
T PTZ00265 751 YKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTII 830 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 0000000 00000 000 000000 0000000 00000 0001112333443333334447889
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 687 SVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSG 766 (782)
Q Consensus 687 ~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~f~~ 766 (782)
++++++.|+++|+++++++.+++.++.. +++......|++++++++++.+++.+++.|++.++++++..++|..+|++
T Consensus 831 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ 908 (1466)
T PTZ00265 831 ALSILVAGGLYPVFALLYAKYVSTLFDF--ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFEN 908 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876542 23345677899999999999999999999999999999999999999999
Q ss_pred HHcCCcccccc
Q 003976 767 SFIFSFQFYIL 777 (782)
Q Consensus 767 il~~~~~fFd~ 777 (782)
++++|++|||.
T Consensus 909 ll~~~~~~fd~ 919 (1466)
T PTZ00265 909 ILYQEISFFDQ 919 (1466)
T ss_pred HHcCCHHHhCC
Confidence 99999999986
No 5
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.2e-105 Score=933.33 Aligned_cols=568 Identities=33% Similarity=0.474 Sum_probs=518.1
Q ss_pred cchHHHHHhhcChhhHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 003976 34 SGSFLSLFAAADKIDCV--LMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVS 111 (782)
Q Consensus 34 ~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~ 111 (782)
+..+.+++....++++. .++++.++..+.+++.|+ ++..++|.+.... ..+.+...++.++++++...++
T Consensus 139 ~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~---~~q~viD~Vl~~~-----~~~tL~vl~ig~~~~~l~~~~l 210 (709)
T COG2274 139 PFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPL---FSQIVIDKVLPDA-----SRSTLTVLAIGLLLAALFEALL 210 (709)
T ss_pred ccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhccC-----chhHHHHHHHHHHHHHHHHHHH
Confidence 33444555554444332 233344444445555555 5677999986532 2345555667777778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 112 AWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVG 191 (782)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~ 191 (782)
.+++.++..+.+.|+..++-.++|+|++++|+.||+++ ++|++++|+. |.+.|+++++..+...+.+++++++.+++|
T Consensus 211 ~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm 288 (709)
T COG2274 211 RLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVM 288 (709)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999984 9999999996 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 003976 192 FTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQ 271 (782)
Q Consensus 192 ~~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~ 271 (782)
++++|+|+++.++.+|+++++..++.+.+++..++..+..++.++.+.|+++||+|||+.+.|.++..+|++...+..+.
T Consensus 289 ~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~ 368 (709)
T COG2274 289 FLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNI 368 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 272 GKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIIS 351 (782)
Q Consensus 272 ~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~ 351 (782)
+.+..........+..++..+..++++|+|+++|.+|++|+|+++++.+.......|+..+...+..+++++.+.+|+.+
T Consensus 369 ~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~d 448 (709)
T COG2274 369 GFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGD 448 (709)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998777777778999999999999999999999999
Q ss_pred HHhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC
Q 003976 352 IIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 431 (782)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~ 431 (782)
+++.++|. +. +......++..|+|+|+||+|+|+.+++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|+
T Consensus 449 il~~~~E~-~~-~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 449 ILDTPPEQ-EG-DKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred HhcCCccc-cc-ccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 99998875 22 11123456788999999999999876556999999999999999999999999999999999999999
Q ss_pred ccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCC
Q 003976 432 SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511 (782)
Q Consensus 432 ~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~ 511 (782)
+|+|++||.|+.+++++++|++||||+||+.||+|||+|||++++|++++|++.+||+.|++|+||+++|.||||+|||+
T Consensus 527 ~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~ 606 (709)
T COG2274 527 QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEG 606 (709)
T ss_pred CceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEE
Q 003976 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 591 (782)
Q Consensus 512 G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~iv 591 (782)
|.+|||||||||+||||+++||+||||||||||||+++|+.|.+.|.++.++||+|+||||++++++||||+|||+|+|+
T Consensus 607 G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv 686 (709)
T COG2274 607 GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686 (709)
T ss_pred CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhHHhhcCchhHHHHHhh
Q 003976 592 ESGTHVDLISKGGEYAALVNLQ 613 (782)
Q Consensus 592 e~G~~~eL~~~~~~y~~l~~~~ 613 (782)
|+|||+||++.+|.|++++..|
T Consensus 687 ~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 687 EQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred ccCCHHHHHHhcChHHHHHhcc
Confidence 9999999999999999999765
No 6
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.1e-99 Score=889.56 Aligned_cols=569 Identities=22% Similarity=0.283 Sum_probs=492.6
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 36 SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIG 115 (782)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~ 115 (782)
.+++++++.++++ ..++++++++++.+++.+..|+++++++|.+.....+ ...+..+...++++.++..++.+++
T Consensus 9 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (588)
T PRK11174 9 LTRWLKQQSKPAK-RWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP----REALLPPFILLILLFVLRALLAWLR 83 (588)
T ss_pred hhHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888887764 4566788888888888889999999999986421101 1122223334445556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 116 VAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSV 195 (782)
Q Consensus 116 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~ 195 (782)
.++....+.++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++
T Consensus 84 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (588)
T PRK11174 84 ERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG-KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPIN 162 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 003976 196 WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKS 275 (782)
Q Consensus 196 w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~ 275 (782)
|++++++++++|+++++...+.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+.
T Consensus 163 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 242 (588)
T PRK11174 163 WAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEV 242 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 276 GVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKA------FTTI---INVIFSGFALGQAAPNLAAIAKGKAAA 346 (782)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l------~~~~---~~~~~~~~~l~~l~~~~~~~~~a~~a~ 346 (782)
.+..+...++..++..+..+++++++++.+. |.+|+|++ +..+ .+......|+..+...+..++++++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~ 321 (588)
T PRK11174 243 LRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAA 321 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666666555555555556665543 88888864 1111 222233568888888999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHc
Q 003976 347 ANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 347 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
+|+.++++.+++. +. ......+....++|+|+||+|.|+++ +++|+|+||+|+||+++|||||||||||||+++|+|
T Consensus 322 ~ri~~~l~~~~~~-~~-~~~~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 322 ESLVTFLETPLAH-PQ-QGEKELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred HHHHHHHcCCCcc-cC-CCccccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 9999999876532 11 11101111224579999999887643 359999999999999999999999999999999999
Q ss_pred CCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccc
Q 003976 427 LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 506 (782)
Q Consensus 427 ~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t 506 (782)
+| |++|+|++||+|+++++.+++|++|+||||||+||++||||||++|+|++++||+++||+.|++++||.+||+||||
T Consensus 399 ~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT 477 (588)
T PRK11174 399 FL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDT 477 (588)
T ss_pred CC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccc
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEe
Q 003976 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLK 586 (782)
Q Consensus 507 ~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~ 586 (782)
.|||+|.+||||||||||||||+++||+||||||||||||+++|+.|+++|+++.++||+|+||||++++++||+|+||+
T Consensus 478 ~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~ 557 (588)
T PRK11174 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557 (588)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred CCEEEEecChhHHhhcCchhHHHHHhhhc
Q 003976 587 NGQVVESGTHVDLISKGGEYAALVNLQSS 615 (782)
Q Consensus 587 ~G~ive~G~~~eL~~~~~~y~~l~~~~~~ 615 (782)
+|+|+|+|+|+||++++|.|+++++.|..
T Consensus 558 ~G~i~e~G~~~eL~~~~~~y~~l~~~q~~ 586 (588)
T PRK11174 558 DGQIVQQGDYAELSQAGGLFATLLAHRQE 586 (588)
T ss_pred CCeEeecCCHHHHHhcchHHHHHHHHhhc
Confidence 99999999999999999999999987653
No 7
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.8e-99 Score=954.41 Aligned_cols=569 Identities=29% Similarity=0.477 Sum_probs=496.8
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 36 SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIG 115 (782)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~ 115 (782)
.+.+++++..++.+ .++++++++++.+++.|++++++++++|.+... .........+++++++++++.+++.+++
T Consensus 812 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~i~~~~~~~l~ 886 (1466)
T PTZ00265 812 NLRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDF----ANLEANSNKYSLYILVIAIAMFISETLK 886 (1466)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666655533 467888899999999999999999999986421 1122234456777778888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 116 VAFWMQTGERQTARLRLKYLQSVLKKDMSFFDT-EARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS 194 (782)
Q Consensus 116 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~-~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~ 194 (782)
.++..++++++..++|.++|++++++|++|||+ +.++|++++|+++|++.+++++...+..++..++.++++++++|++
T Consensus 887 ~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~ 966 (1466)
T PTZ00265 887 NYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF 966 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 2479999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhccHHH
Q 003976 195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLS-EK-----------------GEAAYGEAGKVAEEIISQVRAVYAFVGEAK 256 (782)
Q Consensus 195 ~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 256 (782)
+|.+++++++++|++ ...+.++.+... .+ .++..++.+..++|+++|+++||+|+.|++
T Consensus 967 ~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 1043 (1466)
T PTZ00265 967 CPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDY 1043 (1466)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHH
Confidence 999998876544433 333333332211 11 233467789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 257 AIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNL 336 (782)
Q Consensus 257 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~ 336 (782)
+.++|.+..++..+...+.....++..++.+++.++..++++|+|++++.+|.+|+|++++++++++....++..+...+
T Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~ 1123 (1466)
T PTZ00265 1044 FCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLK 1123 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989899999998999988888999999999999999999999999888766665555678888899
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC---CCCCcCcEEEEeEEEEcCCCCC-cccccceEEeeCCCEEEEeCC
Q 003976 337 AAIAKGKAAAANIISIIKENSHSSERPGDDGIT---LPKLAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGP 412 (782)
Q Consensus 337 ~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~---~~~~~g~i~~~~v~f~y~~~~~-~vL~~isl~i~~G~~vaivG~ 412 (782)
..+++++++++|++++++++++. +..+..+.. ++...|.|+|+||+|+||++++ +||+|+||+|++|+++|||||
T Consensus 1124 ~~~~~a~~a~~ri~~ll~~~~~~-~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~ 1202 (1466)
T PTZ00265 1124 GDSENAKLSFEKYYPLIIRKSNI-DVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGE 1202 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcC-CCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECC
Confidence 99999999999999999987644 111111111 2235678999999999997654 599999999999999999999
Q ss_pred CCCcHHHHHHHHHcCCCC------------------------------------------------------CccEEEEC
Q 003976 413 SGSGKSTIISMVQRLYEP------------------------------------------------------TSGKILLD 438 (782)
Q Consensus 413 sGsGKSTl~~ll~~~~~~------------------------------------------------------~~G~I~i~ 438 (782)
||||||||++||+|||+| ++|+|++|
T Consensus 1203 SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~id 1282 (1466)
T PTZ00265 1203 TGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLD 1282 (1466)
T ss_pred CCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEEC
Confidence 999999999999999999 69999999
Q ss_pred CeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHH
Q 003976 439 GHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 518 (782)
Q Consensus 439 g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgG 518 (782)
|+||++++.++||++||||+|||+||++||||||+||+|+++++++++||+.|++|+||.+||+||||.|||+|.+||||
T Consensus 1283 G~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGG 1362 (1466)
T PTZ00265 1283 GVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGG 1362 (1466)
T ss_pred CEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhhcCEEEEEeC----CEEE-
Q 003976 519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKN----GQVV- 591 (782)
Q Consensus 519 QkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl~~----G~iv- 591 (782)
|||||||||||++||+||||||||||||+++|+.|+++|+++. ++||+|+||||++++++||+|+||++ |+++
T Consensus 1363 QkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~ 1442 (1466)
T PTZ00265 1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQ 1442 (1466)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEE
Confidence 9999999999999999999999999999999999999999984 69999999999999999999999999 9955
Q ss_pred EecChhHHhh-cCchhHHHHHhh
Q 003976 592 ESGTHVDLIS-KGGEYAALVNLQ 613 (782)
Q Consensus 592 e~G~~~eL~~-~~~~y~~l~~~~ 613 (782)
|+|||+||++ ++|.|++|++.|
T Consensus 1443 e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1443 AHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred EecCHHHHHhcCCChHHHHHhhc
Confidence 8999999998 599999999765
No 8
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3e-98 Score=877.15 Aligned_cols=562 Identities=35% Similarity=0.557 Sum_probs=508.3
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 37 FLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGV 116 (782)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~ 116 (782)
+++++++.+ ++ .+.++.++.++..+.....|.+++.++|.+.. + ......+..+++++.++..++.++..
T Consensus 4 ~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~----~~~~~~~~~~~~~~~~~~~v~~~~~~ 73 (567)
T COG1132 4 LRRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA---D----LGELLELLLLLLLLALLGGVLRALQS 73 (567)
T ss_pred HHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---h----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566554 45 66677777777778888888888999998751 1 12233344455555556777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 117 AFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVW 196 (782)
Q Consensus 117 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w 196 (782)
++..+.+.++..++|.++|++++++|++||++ .++|++++|+++|++.++..+.+....+...++.+++.+++++..+|
T Consensus 74 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (567)
T COG1132 74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSW 152 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCc-CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888899999999999999999999999999 58999999999999999999998855555578888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 197 QLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSG 276 (782)
Q Consensus 197 ~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~ 276 (782)
.+++++++..|++.++..++.++.++..++.++..++.++.+.|.++|+++||+|+.++.+.++|.+..++..+...+..
T Consensus 153 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (567)
T COG1132 153 RLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRAS 232 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003976 277 VAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKEN 356 (782)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~ 356 (782)
...+...++..++..+..++++++|++++..+.+++|.+++++.+......|+..+...+..++.+..+++|++++++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~ 312 (567)
T COG1132 233 RLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEE 312 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888889999999999999999999999999998888888888899999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEE
Q 003976 357 SHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436 (782)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~ 436 (782)
++..+... ......++|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|+
T Consensus 313 ~~~~~~~~----~~~~~~~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~ 387 (567)
T COG1132 313 PEVEDPPD----PLKDTIGSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387 (567)
T ss_pred ccccCCCC----CCCCCCCeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence 76422211 12334578999999999984 23599999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCC
Q 003976 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS 516 (782)
Q Consensus 437 i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LS 516 (782)
+||+||++++.++||++|++|||||+||++||+|||++|+|++++||+++||+.|++||||+++|+||||.|||+|.+||
T Consensus 388 idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LS 467 (567)
T COG1132 388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLS 467 (567)
T ss_pred ECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecCh
Q 003976 517 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 517 gGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~ 596 (782)
||||||||||||+++||||||||||||+||++||+.|+++++++.++||+|+||||++++++||+|+|||+|+|+|.|+|
T Consensus 468 gGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h 547 (567)
T COG1132 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTH 547 (567)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hHHhhcCchhHHHHHhhh
Q 003976 597 VDLISKGGEYAALVNLQS 614 (782)
Q Consensus 597 ~eL~~~~~~y~~l~~~~~ 614 (782)
+||++++|.|+++++.|.
T Consensus 548 ~eLl~~~g~y~~l~~~~~ 565 (567)
T COG1132 548 EELLAKGGLYARLYQAQG 565 (567)
T ss_pred HHHHHcCCHHHHHHHHhh
Confidence 999999999999998764
No 9
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.3e-96 Score=879.66 Aligned_cols=566 Identities=34% Similarity=0.510 Sum_probs=506.0
Q ss_pred ccchHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 003976 33 QSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSA 112 (782)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~ 112 (782)
....+++++++.++. +..+++++++.++.+++....|++++.++|.+.... +. ..+.....+++++.++..++.
T Consensus 145 ~~~~~~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~ 218 (711)
T TIGR00958 145 TADLLFRLLGLSGRD-WPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDK-GP----PALASAIFFMCLLSIASSVSA 218 (711)
T ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CH----HHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888654 556667777888888888888999999999875321 11 122223333444555667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 113 WIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGF 192 (782)
Q Consensus 113 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~ 192 (782)
+++.+++.+.+.++..++|.++|++++++|++||++ .++|++++|+++|++.+++.+.+.+..++.+++.+++.+++++
T Consensus 219 ~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~ 297 (711)
T TIGR00958 219 GLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFML 297 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999998 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 003976 193 TSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQG 272 (782)
Q Consensus 193 ~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~ 272 (782)
+++|.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|.+..++..+..
T Consensus 298 ~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 377 (711)
T TIGR00958 298 WLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLN 377 (711)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 273 KKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 352 (782)
Q Consensus 273 ~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~ 352 (782)
.+.....+....+..++..+..++++++|++++.+|.+|+|++++++.+......|+..+...+..+++++++++|++++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~ 457 (711)
T TIGR00958 378 KRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEY 457 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777666666666677788889999999999999999999988888888889999999999999999999999999
Q ss_pred HhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCC-CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC
Q 003976 353 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 431 (782)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~ 431 (782)
++.+++. +. .....+.+..+.|+|+||+|+||+++ .++|+|+||+|+|||++|||||||||||||+++|+|+|+|+
T Consensus 458 l~~~~~~-~~--~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~ 534 (711)
T TIGR00958 458 LDRKPNI-PL--TGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT 534 (711)
T ss_pred hCCCCCC-CC--CCCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 9887654 11 11112233467899999999998764 35999999999999999999999999999999999999999
Q ss_pred ccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCC
Q 003976 432 SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511 (782)
Q Consensus 432 ~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~ 511 (782)
+|+|++||+|+++++.+++|++|+||||||++|++||||||++|.+++++++++++++.+++++||++||+||||.+||+
T Consensus 535 ~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 535 GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred CCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEE
Q 003976 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 591 (782)
Q Consensus 512 G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~iv 591 (782)
|.+||||||||||||||+++||+|||||||||+||+++|+.+++ ....+++|+|+||||+++++.||+|+||++|+|+
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~iv 692 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVV 692 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999 3345789999999999999999999999999999
Q ss_pred EecChhHHhhcCchhHHHH
Q 003976 592 ESGTHVDLISKGGEYAALV 610 (782)
Q Consensus 592 e~G~~~eL~~~~~~y~~l~ 610 (782)
|+|+|+||++++|.|++++
T Consensus 693 e~Gt~~eL~~~~~~y~~lv 711 (711)
T TIGR00958 693 EMGTHKQLMEDQGCYKHLV 711 (711)
T ss_pred EeeCHHHHHhCCCchHhcC
Confidence 9999999999999998863
No 10
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.8e-95 Score=874.15 Aligned_cols=565 Identities=25% Similarity=0.370 Sum_probs=502.9
Q ss_pred chHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003976 35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI 114 (782)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~ 114 (782)
..+++++++.+++++ .+...++++++..++....|++++.++|.+.... + ...+...++.++++.++..++.++
T Consensus 142 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~ 215 (708)
T TIGR01193 142 NSLLKFIPLITRQKK-LIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-M----MGTLGIISIGLIIAYIIQQILSYI 215 (708)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777877766543 4455566666666667777888899999875421 1 122333344444555666788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS 194 (782)
Q Consensus 115 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~ 194 (782)
+.++..+.+.++..++|.++|+|++++|+.||++ .++|++++|++ |++.+++.+...+...+.+++.+++.+++++++
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~-~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (708)
T TIGR01193 216 QIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST-RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQ 293 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 59999999998 899999999888888888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 003976 195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK 274 (782)
Q Consensus 195 ~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k 274 (782)
+|++++++++.+|+++++..++.++.++..++.++..++.++.+.|+++|+++||++|.|+.+.++|.+...+..+...+
T Consensus 294 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 373 (708)
T TIGR01193 294 NMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFK 373 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003976 275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK 354 (782)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~ 354 (782)
.....+....+..++..+..++++|+|++++.+|.+|+|+++++..+......|+.++...+..+++++.+.+|+.++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 453 (708)
T TIGR01193 374 YQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYL 453 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88887777777777777888889999999999999999999998888777788999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccE
Q 003976 355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434 (782)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~ 434 (782)
.+++..+. ......+...|+|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 454 ~~~e~~~~--~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 454 VDSEFINK--KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred CCCccccc--ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 76654111 1111123446789999999999743 35999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcC-CCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCC
Q 003976 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513 (782)
Q Consensus 435 I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g-~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~ 513 (782)
|++||+|+++++.+++|++||||||||+||++||+|||++| .|+++++++++||+.|++++||.+||+||||.|||+|.
T Consensus 531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence 99999999999999999999999999999999999999999 57899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEe
Q 003976 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 593 (782)
Q Consensus 514 ~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~ 593 (782)
+|||||||||+||||++++|+|||||||||+||+++|+.+++.|++. +++|+|+||||+++++.||+|+||++|+++|.
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999885 78999999999999999999999999999999
Q ss_pred cChhHHhhcCchhHHHHH
Q 003976 594 GTHVDLISKGGEYAALVN 611 (782)
Q Consensus 594 G~~~eL~~~~~~y~~l~~ 611 (782)
|+|+||++++|.|+++++
T Consensus 690 G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 690 GSHDELLDRNGFYASLIH 707 (708)
T ss_pred CCHHHHHhcCCcHHHHhh
Confidence 999999999999999874
No 11
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.2e-95 Score=869.13 Aligned_cols=564 Identities=25% Similarity=0.305 Sum_probs=502.5
Q ss_pred chHHHHHhh-cChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003976 35 GSFLSLFAA-ADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAW 113 (782)
Q Consensus 35 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~ 113 (782)
..+++++++ .++. +..+...++++++..++....|++++.++|.+.... + ...+...++.++++.++..++.+
T Consensus 121 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~ 194 (686)
T TIGR03797 121 LGLRDLLRFALRGA-RRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-D----RSLLVQIALALLAAAVGAAAFQL 194 (686)
T ss_pred ccHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-C----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666 3433 444455566666666666677778899999875321 1 12233344445555566778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 114 IGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFT 193 (782)
Q Consensus 114 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~ 193 (782)
++.++...++.++..++|.++|+|++++|++||++ .++|++++|++ |++.+++.+...+...+.+++.+++.++++++
T Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (686)
T TIGR03797 195 AQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQ-YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFY 272 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 59999999997 79999999998888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 003976 194 SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGK 273 (782)
Q Consensus 194 ~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~ 273 (782)
++|++++++++++|+++++..++.++.++..++.++..++.++.+.|+++|+++||+++.|+++.++|.+..++..+...
T Consensus 273 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 352 (686)
T TIGR03797 273 YSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLEL 352 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 274 KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISII 353 (782)
Q Consensus 274 k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l 353 (782)
+.....+....+..++..+..++++|+|++++.+|.+|+|+++++..+......|+.++...+..+++++.+.+|+.+++
T Consensus 353 ~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 432 (686)
T TIGR03797 353 SAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPIL 432 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99888888777777888888899999999999999999999999888777778899999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc
Q 003976 354 KENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433 (782)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G 433 (782)
+.+++. +. ....+....++|+|+||+|+|++..+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|
T Consensus 433 ~~~~e~-~~---~~~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 508 (686)
T TIGR03797 433 EALPEV-DE---AKTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508 (686)
T ss_pred cCCccc-cc---CcCCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 876543 11 11112234578999999999975445699999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCC
Q 003976 434 KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513 (782)
Q Consensus 434 ~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~ 513 (782)
+|++||+|+++++.+++|++||||||||+||+|||+|||++|+| ++++++++|++.|+++++|+++|+||||.+||+|.
T Consensus 509 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~ 587 (686)
T TIGR03797 509 SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGG 587 (686)
T ss_pred EEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCC
Confidence 99999999999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEe
Q 003976 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 593 (782)
Q Consensus 514 ~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~ 593 (782)
+|||||||||+||||++++|||||||||||+||+++|+.+.+.|+++ ++|+|+||||+++++.||+|+||++|+|+|+
T Consensus 588 ~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665 (686)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999886 6899999999999999999999999999999
Q ss_pred cChhHHhhcCchhHHHHHhh
Q 003976 594 GTHVDLISKGGEYAALVNLQ 613 (782)
Q Consensus 594 G~~~eL~~~~~~y~~l~~~~ 613 (782)
|+|+||++++|.|+++++.|
T Consensus 666 G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 666 GTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred CCHHHHHhCCcHHHHHHHhc
Confidence 99999999999999998754
No 12
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.2e-95 Score=872.66 Aligned_cols=583 Identities=24% Similarity=0.316 Sum_probs=507.6
Q ss_pred CCCcccccCCCCCccccchHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHH
Q 003976 18 NLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEH 97 (782)
Q Consensus 18 ~l~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~ 97 (782)
.+..+|+.++++..++...++.++++.++++ ..+...++++++..++....|++++.++|.+.... + ...+..+
T Consensus 123 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~----~~~l~~~ 196 (710)
T TIGR03796 123 VLTFEPGPEFQKGGRKPSLLRALWRRLRGSR-GALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG-R----QDWLRPL 196 (710)
T ss_pred EEEEEECccccccCcCcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C----hhHHHHH
Confidence 3444444444322223345666777666553 33444555555555555666778889999865322 1 1222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 98 ALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHA 177 (782)
Q Consensus 98 ~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~ 177 (782)
++.++++.++..++.+++.++....+.++..++|.++|+|++++|++||++ .++|++++|+++| +.+++++...+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~-~~~g~~~~r~~~~-~~i~~~~~~~~~~~ 274 (710)
T TIGR03796 197 LLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ-RHAGDIASRVQLN-DQVAEFLSGQLATT 274 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CcccHHHHHhhhH-HHHHHHHHHHHHHH
Confidence 444445556677888999999999999999999999999999999999998 5999999999988 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHH
Q 003976 178 LRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKA 257 (782)
Q Consensus 178 i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~ 257 (782)
+.+++.+++.++++++++|.++++.++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||++|.|+.+
T Consensus 275 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 354 (710)
T TIGR03796 275 ALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDF 354 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 258 IESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLA 337 (782)
Q Consensus 258 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~ 337 (782)
.++|.+...+..+...+.....+....+..++..+..++++|+|++++.+|.+|+|+++++..+......|+..+...+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~ 434 (710)
T TIGR03796 355 FSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGG 434 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888877777888888889999999999999999999999988887777889999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCC---CCCCCC-CCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCC
Q 003976 338 AIAKGKAAAANIISIIKENSHSSERPG---DDGITL-PKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPS 413 (782)
Q Consensus 338 ~~~~a~~a~~ri~~~l~~~~~~~~~~~---~~~~~~-~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~s 413 (782)
.+++++.+.+|+.++++.+++..+... .....+ +...+.|+++||+|+|++..+++|+|+||+|++||++||||||
T Consensus 435 ~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~s 514 (710)
T TIGR03796 435 TLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGS 514 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCC
Confidence 999999999999999987655311110 000111 2345789999999999865456999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhh
Q 003976 414 GSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANA 493 (782)
Q Consensus 414 GsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~ 493 (782)
|||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||++||||||+++.|+++++++++|++.+++
T Consensus 515 GsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l 594 (710)
T TIGR03796 515 GSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAI 594 (710)
T ss_pred CCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 003976 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573 (782)
Q Consensus 494 ~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl 573 (782)
+++|.++|+||||.+||+|.+|||||||||+||||++++|+||||||||||||+++|+.|.+.|++ .++|+|+||||+
T Consensus 595 ~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl 672 (710)
T TIGR03796 595 HDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRL 672 (710)
T ss_pred HHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCH
Confidence 999999999999999999999999999999999999999999999999999999999999999987 589999999999
Q ss_pred chhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHH
Q 003976 574 STVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALV 610 (782)
Q Consensus 574 ~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~ 610 (782)
++++.||+|+||++|+|+|+|+|+||++++|.|++++
T Consensus 673 ~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 673 STIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred HHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 9999999999999999999999999999999999987
No 13
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.9e-94 Score=843.23 Aligned_cols=567 Identities=22% Similarity=0.286 Sum_probs=494.5
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 37 FLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGV 116 (782)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~ 116 (782)
+++++++.+++ +..++++++++++..++....|.++++++|...............+ ..+..+++++++..++.++..
T Consensus 4 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (574)
T PRK11160 4 LLPFLKLYKRH-WFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYM-LPAAGVRGAAIGRTAGRYGER 81 (574)
T ss_pred hHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH-hHHHHHHHHHHHHHHHHHHHH
Confidence 45667777665 3445677777777777777788889999997532110000000111 112233345566778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 117 AFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVW 196 (782)
Q Consensus 117 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w 196 (782)
++.+..+.++..++|.++|+|++++|+++|++ .++|++++|+++|++.+++++...++.++.+++.+++.++++++++|
T Consensus 82 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (574)
T PRK11160 82 LVSHDATFRVLTHLRVFTFSKLLPLSPAGLAR-YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDL 160 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHhhcc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 59999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 003976 197 QLTLLTLAVVPLIAV-AGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKS 275 (782)
Q Consensus 197 ~L~lv~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~ 275 (782)
++++++++++|++++ +..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+.
T Consensus 161 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (574)
T PRK11160 161 TLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQ 240 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887655 4466778888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003976 276 GVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIF-SGFALGQAAPNLAAIAKGKAAAANIISIIK 354 (782)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~-~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~ 354 (782)
.+..+...++..++..+..++++|+|++++ +|.+|+|.+++++.+... ...++..+...+..++++.++++|+.++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~ 319 (574)
T PRK11160 241 ANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITE 319 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 988888888888888888888899999984 889999998886655433 334667777888899999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccE
Q 003976 355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434 (782)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~ 434 (782)
.+++..++ + ........+.|+|+||+|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 320 ~~~~~~~~-~--~~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 320 QKPEVTFP-T--TSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred CCCCCCCC-c--ccCCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 77653111 1 11112235789999999999864445999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCC
Q 003976 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514 (782)
Q Consensus 435 I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~ 514 (782)
|++||+|+++++.+++|++|+||||||+||++||+|||++++|++++++++++++.+++++|+.+ |+||||.|||+|.+
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~ 475 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ 475 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCC
Confidence 99999999999999999999999999999999999999999998999999999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEec
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G 594 (782)
|||||||||+||||++++|+|||||||||+||+++|+.++++|++..+++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred ChhHHhhcCchhHHHHH
Q 003976 595 THVDLISKGGEYAALVN 611 (782)
Q Consensus 595 ~~~eL~~~~~~y~~l~~ 611 (782)
+|+||++++|.|+++++
T Consensus 556 ~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 556 THQELLAQQGRYYQLKQ 572 (574)
T ss_pred CHHHHHhcCcHHHHHHh
Confidence 99999999999999985
No 14
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.4e-94 Score=861.28 Aligned_cols=557 Identities=25% Similarity=0.348 Sum_probs=495.7
Q ss_pred chHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003976 35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI 114 (782)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~ 114 (782)
..+++++++.+++ +..+...++++++..++....|++++.++|.+.... + ...+..+++.++++.++..++.++
T Consensus 133 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~ 206 (694)
T TIGR03375 133 RPKHWFWSTLKES-WPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-A----FETLWVLAIGVALAIVFDFVLKTL 206 (694)
T ss_pred ccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-c----HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677666554 334445566666666667777778899999865321 1 122233333444445566788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS 194 (782)
Q Consensus 115 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~ 194 (782)
+.++..+.+.++..++|.++|+|++++|+.| ++ .++|++++|+ +|++.+++.+...+...+.+++.+++.+++++++
T Consensus 207 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~-~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (694)
T TIGR03375 207 RSYFLDVAGKKADLILSAKLFERVLGLRMEA-RP-ASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAII 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CC-CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 66 4899999999 7999999999988888888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 003976 195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK 274 (782)
Q Consensus 195 ~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k 274 (782)
+|.++++.++.+|+++++..++.++.++..++..+..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+
T Consensus 284 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR03375 284 GGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLK 363 (694)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003976 275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK 354 (782)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~ 354 (782)
.....+....+..++..+..++++|+|++++.+|.+|+|+++++..+......|+..+...+..+++++.+.+|+.++++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~ 443 (694)
T TIGR03375 364 SRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQ 443 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 98888888888888888888889999999999999999999998888877788999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccE
Q 003976 355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434 (782)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~ 434 (782)
.+++. +. .......+...+.|+|+||+|+|++..+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 444 ~~~e~-~~-~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~ 521 (694)
T TIGR03375 444 LPVER-PE-GTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS 521 (694)
T ss_pred CCCCC-CC-CCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 77653 11 11111122345789999999999865456999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCC
Q 003976 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514 (782)
Q Consensus 435 I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~ 514 (782)
|.+||+|+++++.+++|++|+||||||++|++||+|||++++|+++++++++|++.++++++|++||+||||.+||+|.+
T Consensus 522 I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~ 601 (694)
T TIGR03375 522 VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRS 601 (694)
T ss_pred EEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCC
Confidence 99999999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEec
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G 594 (782)
|||||||||+||||++++|+|||||||||+||+++|+.++++|++..+++|+|+||||+++++.||+|+||++|+|+|+|
T Consensus 602 LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G 681 (694)
T TIGR03375 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG 681 (694)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeC
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred ChhHHhhc
Q 003976 595 THVDLISK 602 (782)
Q Consensus 595 ~~~eL~~~ 602 (782)
+|+||+++
T Consensus 682 ~~~eLl~~ 689 (694)
T TIGR03375 682 PKDQVLEA 689 (694)
T ss_pred CHHHHHHH
Confidence 99999875
No 15
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.5e-92 Score=832.02 Aligned_cols=566 Identities=30% Similarity=0.460 Sum_probs=501.1
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 37 FLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGV 116 (782)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~ 116 (782)
++.++++.+++++ .+++.+++.++..++....+.+++.++|...... . ...+...++.+++++++..++.++..
T Consensus 13 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~~~ 86 (582)
T PRK11176 13 FRRLWPTIAPFKA-GLIVAGVALILNAASDTFMLSLLKPLLDDGFGKA--D---RSVLKWMPLVVIGLMILRGITSFISS 86 (582)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--c---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665544 3445556666666666667778888998764321 1 11122223333445566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 117 AFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVW 196 (782)
Q Consensus 117 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w 196 (782)
++..+.+.++..++|.++|+++++.|.++|++ .++|++++|+++|++.+++.+...+..++.+++.+++.++++++++|
T Consensus 87 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (582)
T PRK11176 87 YCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999998 59999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 197 QLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSG 276 (782)
Q Consensus 197 ~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~ 276 (782)
.+++++++++|+.+++..++.+++++..++.++..++..+.+.|.++|+++||+||.|+.+.++|++..++..+...+..
T Consensus 166 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T PRK11176 166 QLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMV 245 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003976 277 VAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKEN 356 (782)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~ 356 (782)
...+....+..++..+..++++++|++++.+|.+|+|++++++.++.....|+..+...+..+++++.+.+|+.++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~ 325 (582)
T PRK11176 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLE 325 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88877777777777788888899999999999999999988777777777899999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEE
Q 003976 357 SHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436 (782)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~ 436 (782)
++. +. +....++..++|+++||+|+||++..++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 326 ~~~-~~---~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~ 401 (582)
T PRK11176 326 QEK-DE---GKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401 (582)
T ss_pred CcC-CC---CCcCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence 442 11 11112233567999999999986545699999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCC-CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCC
Q 003976 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED-ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 515 (782)
Q Consensus 437 i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~-~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~L 515 (782)
+||+|+++++.+++|++|+||||||++|++||+|||++|+++ +++++++++++.+++++++++||+|+||.+||+|.+|
T Consensus 402 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~L 481 (582)
T PRK11176 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481 (582)
T ss_pred ECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcC
Confidence 999999999999999999999999999999999999999765 7999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecC
Q 003976 516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595 (782)
Q Consensus 516 SgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~ 595 (782)
||||||||+||||++++|+||||||||||||+++|+.+.++|.++.+++|+|+||||+++++.||+|++|++|+|+|+|+
T Consensus 482 SGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~ 561 (582)
T PRK11176 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGT 561 (582)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhhcCchhHHHHHhh
Q 003976 596 HVDLISKGGEYAALVNLQ 613 (782)
Q Consensus 596 ~~eL~~~~~~y~~l~~~~ 613 (782)
|++|+++++.|+++++.|
T Consensus 562 ~~~l~~~~~~y~~l~~~~ 579 (582)
T PRK11176 562 HAELLAQNGVYAQLHKMQ 579 (582)
T ss_pred HHHHHhCCChHHHHHHHH
Confidence 999999999999999765
No 16
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5e-92 Score=842.18 Aligned_cols=568 Identities=30% Similarity=0.391 Sum_probs=505.6
Q ss_pred chHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003976 35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI 114 (782)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~ 114 (782)
..+.+++++.++++ ..+...++++++..++....|++++.++|.+.... + ...+..+++.++++.++..++.++
T Consensus 125 ~~~~~~~~~~~~~~-~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~----~~~l~~l~~~~~~~~~~~~~~~~l 198 (694)
T TIGR01846 125 FGFSWFIPAIIRYR-KQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-G----LSTLSVLALAMLAVAIFEPALGGL 198 (694)
T ss_pred CcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666776665543 33444555555555666667778899999875321 1 122333444555556667788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS 194 (782)
Q Consensus 115 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~ 194 (782)
+.++....+.++..++|.++|+|++++|++||++ .++|++++|+ +|++.+++++...+..++.+++.+++.+++++++
T Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~-~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 276 (694)
T TIGR01846 199 RTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES-RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFY 276 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC-CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 5999999999 6999999999888888887887777778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 003976 195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK 274 (782)
Q Consensus 195 ~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k 274 (782)
+|.+++++++++|+++++..++.++.++..++..+..++.++.+.|+++|+++||++|.|+.+.++|.+..++..+...+
T Consensus 277 ~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 356 (694)
T TIGR01846 277 SPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFR 356 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003976 275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK 354 (782)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~ 354 (782)
.....+....+..++..+..++++|+|++++.+|.+|+|+++++..+......|+..+...+..+++++.+++|+.++++
T Consensus 357 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 436 (694)
T TIGR01846 357 VTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILN 436 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 98888888888888888888999999999999999999999998877777788999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccE
Q 003976 355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434 (782)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~ 434 (782)
.+++. +. ......+...+.|+|+||+|+|++..+++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+
T Consensus 437 ~~~e~-~~--~~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~ 513 (694)
T TIGR01846 437 SPTEP-RS--AGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ 513 (694)
T ss_pred CCCCc-cC--CCCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 76543 21 1111123345789999999999755445999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCC
Q 003976 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514 (782)
Q Consensus 435 I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~ 514 (782)
|++||+|+++++.+++|++|+||+|+|++|++||+|||+++.|+++++++++||+.+++++++.+||+||||.+||+|.+
T Consensus 514 I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~ 593 (694)
T TIGR01846 514 VLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGAN 593 (694)
T ss_pred EEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEec
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G 594 (782)
|||||||||+||||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+++|
T Consensus 594 LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESG 673 (694)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCchhHHHHHhh
Q 003976 595 THVDLISKGGEYAALVNLQ 613 (782)
Q Consensus 595 ~~~eL~~~~~~y~~l~~~~ 613 (782)
+|+||++++|.|+++++.|
T Consensus 674 ~~~~l~~~~~~y~~l~~~~ 692 (694)
T TIGR01846 674 RHEELLALQGLYARLWQQQ 692 (694)
T ss_pred CHHHHHHcCChHHHHHHhh
Confidence 9999999999999999755
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.5e-91 Score=821.65 Aligned_cols=567 Identities=26% Similarity=0.360 Sum_probs=486.2
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 36 SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIG 115 (782)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~ 115 (782)
.+++++.|.+++ +..+++.++++++..++.+..|.+++.++|.+.... +.. . .....+++.++++.++..++.++.
T Consensus 10 ~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 85 (592)
T PRK10790 10 TLKRLLAYGSPW-RKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKG-NLP-L-GLVAGLAAAYVGLQLLAAGLHYAQ 85 (592)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Ccc-h-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666554 344556777777778888888889999999864321 111 1 111112233444445566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 116 VAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSV 195 (782)
Q Consensus 116 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~ 195 (782)
.+.....+.++..++|.++|+++++.|+++|++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++
T Consensus 86 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (592)
T PRK10790 86 SLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT-QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLD 164 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999998 5999999999999999999999999999999988898989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 003976 196 WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKS 275 (782)
Q Consensus 196 w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~ 275 (782)
|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.
T Consensus 165 ~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (592)
T PRK10790 165 WRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQT 244 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888889999999999999999999999999999999999998888877776
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003976 276 GVAKGIG-VGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK 354 (782)
Q Consensus 276 ~~~~~~~-~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~ 354 (782)
....+.. ..+..++..+...+++++++. +..|.+++|.++++..+......|+..+...+..++++..+++|+.++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~ 323 (592)
T PRK10790 245 LRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMD 323 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6655543 233333333332333333344 67999999999988777777788999999999999999999999999997
Q ss_pred ccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccE
Q 003976 355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434 (782)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~ 434 (782)
.+++. +. . ...+...++|+|+||+|+||++ .++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+
T Consensus 324 ~~~~~-~~--~--~~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~ 397 (592)
T PRK10790 324 GPRQQ-YG--N--DDRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE 397 (592)
T ss_pred CCCcc-CC--C--CccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 65432 11 1 1112234689999999999853 35999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCC
Q 003976 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514 (782)
Q Consensus 435 I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~ 514 (782)
|++||+|+++++.+++|++|+||||||+||++||+|||++|+ ++++++++++++.++++++|++||+||||.+||+|.+
T Consensus 398 I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~ 476 (592)
T PRK10790 398 IRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNN 476 (592)
T ss_pred EEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCC
Confidence 999999999999999999999999999999999999999998 5899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEec
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G 594 (782)
|||||||||+||||++++|||||||||||+||+++|+.|.+.|+++.+++|+|+||||+++++.||+|++|++|+|++.|
T Consensus 477 LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQG 556 (592)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCchhHHHHHhhhc
Q 003976 595 THVDLISKGGEYAALVNLQSS 615 (782)
Q Consensus 595 ~~~eL~~~~~~y~~l~~~~~~ 615 (782)
+|+||+++++.|+++++.|..
T Consensus 557 ~~~~L~~~~~~y~~l~~~~~~ 577 (592)
T PRK10790 557 THQQLLAAQGRYWQMYQLQLA 577 (592)
T ss_pred CHHHHHhCCCHHHHHHHHHhh
Confidence 999999999999999987643
No 18
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-94 Score=771.71 Aligned_cols=550 Identities=28% Similarity=0.374 Sum_probs=460.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 58 GAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSR-ISEHALYLVYL--GLVALVSAWIGVAFWMQTGERQTARLRLKY 134 (782)
Q Consensus 58 ~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~-~~~~~l~~~~l--~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~ 134 (782)
+.++.-+.....|++..+++|.+.. +..+... +..+....++- +-+..+++-++.++|..+.+...+++-.++
T Consensus 223 ll~i~rli~~~~pi~~k~iv~~lta----p~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~l 298 (790)
T KOG0056|consen 223 LLIIGRLINVSLPILSKWIVDELTA----PDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETEL 298 (790)
T ss_pred HHHHHHHHhhhhHHhHHHHHHhhcC----cchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHH
Confidence 3333344455567788899998752 1122111 11111111111 122356777888999999999999999999
Q ss_pred HHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 003976 135 LQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAV-GFTSVWQLTLLTLAVVPLIAVAG 213 (782)
Q Consensus 135 ~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~-~~~~~w~L~lv~l~~~pl~~~~~ 213 (782)
|+|+..+++.|+-++ ++|+++.-++..++.+. ++...+.++...+.-+.++++. ....+|+.+|++++++.+++.+.
T Consensus 299 frHlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~T 376 (790)
T KOG0056|consen 299 FRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVT 376 (790)
T ss_pred HHHHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhhee
Confidence 999999999999984 99998877776665554 4444444444444434444443 34589999999999998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 214 GAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCA 293 (782)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 293 (782)
..+...-.++.++......+..+...+++-+.+|||-||+|+++.++|.+...++.+...|......+.......+..++
T Consensus 377 i~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg 456 (790)
T KOG0056|consen 377 IKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG 456 (790)
T ss_pred eeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 76666667777888888888888899999999999999999999999999999998887776655444444444444444
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 003976 294 WALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKL 373 (782)
Q Consensus 294 ~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 373 (782)
.+..-.+.+|+|..+.+|+|+.+.+..+++...+|+..++.....+|+...-.++++++++++++..|. ++..+....
T Consensus 457 ll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~--P~a~pl~~~ 534 (790)
T KOG0056|consen 457 LLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL--PGAPPLKVT 534 (790)
T ss_pred HhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC--CCCCCcccc
Confidence 444444556778899999999888888888999999999999999999999999999999999887443 233334456
Q ss_pred cCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhH
Q 003976 374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~ 453 (782)
+|.|+|+||+|.|..+ +++|+||||+++||+++|+|||||+||||++++|.||||.++|+|+|||+||+++..++||++
T Consensus 535 ~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~ 613 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSS 613 (790)
T ss_pred CCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHh
Confidence 7999999999999653 359999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 454 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 454 i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
||+||||..|||+||..||.||+|.+++||+.+|+|+|++||-|.++|+||+|.|||||..||||+|||+||||+++++|
T Consensus 614 IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 614 IGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred cCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhc-CchhHHHHHh
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNL 612 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~-~~~y~~l~~~ 612 (782)
.|++|||||||||..+|+.||.+|.++..+||+|+|||||||+-+||.|+|+++|+|+|.|+|+||+++ +|.|++||+.
T Consensus 694 ~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred cEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 8999999987
Q ss_pred hhcc
Q 003976 613 QSSE 616 (782)
Q Consensus 613 ~~~~ 616 (782)
|+..
T Consensus 774 qqa~ 777 (790)
T KOG0056|consen 774 QQAM 777 (790)
T ss_pred HHhc
Confidence 7654
No 19
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.8e-90 Score=812.75 Aligned_cols=565 Identities=32% Similarity=0.470 Sum_probs=510.8
Q ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 38 LSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVA 117 (782)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~ 117 (782)
+.++++.++. +..++++++++++.+++.+..+.+++.++|...... . ...+...+..++++.++..++.++..+
T Consensus 3 ~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~----~~~~~~~~~~~~~~~i~~~~~~~~~~~ 76 (571)
T TIGR02203 3 RRLWSYVRPY-KAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-D----RSVLWWVPLVVIGLAVLRGICSFVSTY 76 (571)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-c----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544 456777888888888888888999999999754321 1 122333344455566677788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 118 FWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQ 197 (782)
Q Consensus 118 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~ 197 (782)
+....+.++..++|..+|+++++.|.++|++ .++|++.+|+++|++.+++.+...+..++.+++.+++.++++++++|.
T Consensus 77 ~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 155 (571)
T TIGR02203 77 LLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR-QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQ 155 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999998 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 198 LTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGV 277 (782)
Q Consensus 198 L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~ 277 (782)
+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+++.|+.+.++|.+..++..+...+...
T Consensus 156 l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (571)
T TIGR02203 156 LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS 235 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 003976 278 AKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENS 357 (782)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~ 357 (782)
..+....+..++..+..++++++|++++.+|.+|+|.++++..++.....|+..+...+..+++++.+.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (571)
T TIGR02203 236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPP 315 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999888888888999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEE
Q 003976 358 HSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 437 (782)
Q Consensus 358 ~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i 437 (782)
+. +. .....++..++|+++||+|+|+++..++|+|+||+|++||+++|||+||||||||+++|+|+|+|++|+|++
T Consensus 316 ~~-~~---~~~~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i 391 (571)
T TIGR02203 316 EK-DT---GTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL 391 (571)
T ss_pred CC-CC---CCCCCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE
Confidence 43 11 111122345689999999999865456999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCC-CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCC
Q 003976 438 DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS 516 (782)
Q Consensus 438 ~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~-~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LS 516 (782)
||+|+++++.+++|++|+||||+|++|+|||+|||.++++ +.++++++++++.+++++++.+||+|+||.|||+|.+||
T Consensus 392 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LS 471 (571)
T TIGR02203 392 DGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLS 471 (571)
T ss_pred CCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCC
Confidence 9999999999999999999999999999999999999986 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecCh
Q 003976 517 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 517 gGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~ 596 (782)
|||||||+||||++++|||||||||||+||+++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~ 551 (571)
T TIGR02203 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTH 551 (571)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhhcCchhHHHHHhh
Q 003976 597 VDLISKGGEYAALVNLQ 613 (782)
Q Consensus 597 ~eL~~~~~~y~~l~~~~ 613 (782)
+|+++.++.|++++..+
T Consensus 552 ~~l~~~~~~~~~~~~~~ 568 (571)
T TIGR02203 552 NELLARNGLYAQLHNMQ 568 (571)
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 99999999999988754
No 20
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.1e-90 Score=807.11 Aligned_cols=526 Identities=21% Similarity=0.278 Sum_probs=454.8
Q ss_pred HHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 39 SLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAF 118 (782)
Q Consensus 39 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~ 118 (782)
+++++.++++ ..++++++++++.+++....|+++++++|...... ... ........++++.++..++.++..++
T Consensus 3 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (529)
T TIGR02868 3 RILPLLQPRT-RRLVVAILLGALALGSAVALLGVSAWLISRAAEMP----PVL-YLSVAAVAVRAFGIGRAVFRYLERLV 76 (529)
T ss_pred hHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665553 34556666777777777777888999999764211 110 01111111223445566788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 119 WMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQL 198 (782)
Q Consensus 119 ~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L 198 (782)
....+.++..++|.++|+|++++|.+||++ .++|++++|+++|++.+++.+...+..++..++.++++++++++++|.+
T Consensus 77 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 155 (529)
T TIGR02868 77 GHDAALRSLGRLRVRVYDRLARLALAGRRR-FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPA 155 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccccc-CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999998 5999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 199 TLLTLAVVPLIAVAGGAYT-ITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGV 277 (782)
Q Consensus 199 ~lv~l~~~pl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~ 277 (782)
++++++.+|++.++...+. +..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+...
T Consensus 156 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (529)
T TIGR02868 156 ALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAAR 235 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888766654444 444666677788889999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 003976 278 AKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENS 357 (782)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~ 357 (782)
..+...++..++..+..++++|+|++++.+|.+|+|++++++.+......++..+...+..+++++++++|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (529)
T TIGR02868 236 ATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKG 315 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888887778888888888999999999999999999888777777778888888899999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEE
Q 003976 358 HSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 437 (782)
Q Consensus 358 ~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i 437 (782)
+..+..........+..++|+|+||+|+|++++ ++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 394 (529)
T TIGR02868 316 PRPEGVVPAAGALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTL 394 (529)
T ss_pred CcCCCCCCCCcccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 431111111111122346799999999998643 5999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCH
Q 003976 438 DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG 517 (782)
Q Consensus 438 ~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSg 517 (782)
||+|++++ .+++|++|+||||||+||++||||||++|+|++++|++++|++.|+++|||.+||+||||.|||+|.+|||
T Consensus 395 ~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 473 (529)
T TIGR02868 395 DGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG 473 (529)
T ss_pred CCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 003976 518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573 (782)
Q Consensus 518 GQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl 573 (782)
|||||||||||+++|||||||||||||||+++|+.|++.|++..+++|+|+||||+
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999988999999999996
No 21
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1e-89 Score=808.26 Aligned_cols=566 Identities=27% Similarity=0.406 Sum_probs=490.6
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 36 SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIG 115 (782)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~ 115 (782)
.+++++++.+++ +..+.+.++++++..++.+..|++++.++|.+.... . .....+.+++++++..+..++.
T Consensus 6 ~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~ 76 (588)
T PRK13657 6 LYARVLQYLGAE-KRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG----D----IFPLLAAWAGFGLFNIIAGVLV 76 (588)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----c----HHHHHHHHHHHHHHHHHHHHHH
Confidence 356677776544 445556666677777777778888999999864311 1 1111222222333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 116 VAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSV 195 (782)
Q Consensus 116 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~ 195 (782)
.++..+...++..++|.++|+|++++|+.+|++ .++|++++|+++|++.+.+.+...+..++..++.+++.++++++++
T Consensus 77 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (588)
T PRK13657 77 ARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQ-RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMN 155 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666677779999999999999998 5999999999999999998888888888888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 003976 196 WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKS 275 (782)
Q Consensus 196 w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~ 275 (782)
|.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.|+.++.+.++|.+..++..+...+.
T Consensus 156 ~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (588)
T PRK13657 156 WRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPV 235 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003976 276 GVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKE 355 (782)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~ 355 (782)
....+....+..++..+..++++++|++++.+|.+|+|++++++.+......|+..+...+..+..+..+++|+.++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~ 315 (588)
T PRK13657 236 LSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDA 315 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88887777777777778888899999999999999999999887777777788999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEE
Q 003976 356 NSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435 (782)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I 435 (782)
+++. +. .......+...+.|+++||+|+||++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 316 ~~~~-~~-~~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I 392 (588)
T PRK13657 316 VPDV-RD-PPGAIDLGRVKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI 392 (588)
T ss_pred Cccc-CC-CCCCCCcCCCCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 5443 11 11111122234679999999999853 349999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCC
Q 003976 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 515 (782)
Q Consensus 436 ~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~L 515 (782)
.+||+|+++++.+++|++|+||||+|+||++||||||++++|++++++++++++.+++++++.++|+|+||.+|++|.+|
T Consensus 393 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~L 472 (588)
T PRK13657 393 LIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL 472 (588)
T ss_pred EECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCC
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecC
Q 003976 516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595 (782)
Q Consensus 516 SgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~ 595 (782)
||||||||+||||++++|||||||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|+
T Consensus 473 SgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~ 552 (588)
T PRK13657 473 SGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGS 552 (588)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhhcCchhHHHHHhhh
Q 003976 596 HVDLISKGGEYAALVNLQS 614 (782)
Q Consensus 596 ~~eL~~~~~~y~~l~~~~~ 614 (782)
|+||+++++.|+++++.+.
T Consensus 553 ~~~l~~~~~~y~~l~~~~~ 571 (588)
T PRK13657 553 FDELVARGGRFAALLRAQG 571 (588)
T ss_pred HHHHHHCCChHHHHHHHhh
Confidence 9999999999999997654
No 22
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-90 Score=764.37 Aligned_cols=552 Identities=27% Similarity=0.352 Sum_probs=495.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 54 LGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLK 133 (782)
Q Consensus 54 ~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~ 133 (782)
+..+++++.+++...+.+++..+++.+.... ....+..+...++++.++..++.+.+.....+.+.++...||.+
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~-----~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~ 78 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQ-----LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQL 78 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777778888888765321 12344445556666667788889999889999999999999999
Q ss_pred HHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 134 YLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAG 213 (782)
Q Consensus 134 ~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~~~~ 213 (782)
+++|+.++++.|-.+ .++|+..+.+.+.++.++..++..+++.+.+.+..+..++.+|+.+|.-++++++++|++.+.+
T Consensus 79 ~l~~l~~~gp~~~~~-~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfM 157 (559)
T COG4988 79 VLDKLAKLGPAFIAQ-KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFM 157 (559)
T ss_pred HHHHHHhCChhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 214 GAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCA 293 (782)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 293 (782)
.+++++.++..+++.+.+.+.++.+.+.++|+.|+|.|+..+...++..+..++.++..++.-++.-.......++.+++
T Consensus 158 ilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls 237 (559)
T COG4988 158 ILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS 237 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888877778888888888
Q ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC-CCCC
Q 003976 294 WALLLWYAGILVRH-GDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDG-ITLP 371 (782)
Q Consensus 294 ~~~~l~~G~~lv~~-g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~-~~~~ 371 (782)
.+++..+.+..... |.+|....+.++...--.+.|+..++..+..-+.+.+|++.++.+++.+++..+ .... ....
T Consensus 238 iAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~--~~~~~~~~~ 315 (559)
T COG4988 238 IALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPG--SGEKAEVAN 315 (559)
T ss_pred HHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCC--Ccccccccc
Confidence 88887777766666 889877766655555555679999999999999999999999999988765411 1111 1111
Q ss_pred CCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHH
Q 003976 372 KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 451 (782)
Q Consensus 372 ~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR 451 (782)
....+|+++|++|.||+.+ ++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.||
T Consensus 316 ~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 316 EPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred CCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHH
Confidence 1233566679999999765 799999999999999999999999999999999999999999999999999999999999
Q ss_pred hHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 452 EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 452 ~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
+++++|+|+|+||+|||||||++++|++++|++.++++.+++.+|+.. |+|+||+|||+|.+|||||+||+|+|||+++
T Consensus 395 k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 395 KQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred hHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHH
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVN 611 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~ 611 (782)
+++++|||||||+||.+||+.|++.|.++.++||+|+||||+..+++||+|+|||+|+++|+|+|+||.+++|.|++|+.
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~ 553 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLK 553 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhc
Q 003976 612 LQSS 615 (782)
Q Consensus 612 ~~~~ 615 (782)
.|..
T Consensus 554 ~q~~ 557 (559)
T COG4988 554 QQEG 557 (559)
T ss_pred HHhc
Confidence 8753
No 23
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=3.2e-89 Score=801.93 Aligned_cols=565 Identities=27% Similarity=0.387 Sum_probs=492.4
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 37 FLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGV 116 (782)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~ 116 (782)
++++++|.+++ +..++++++++++..++.+..|+++++++|.+.... .. . ...+.+++++++..+..++..
T Consensus 7 ~~~l~~~l~~~-k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~----~~---~-~~~~~~~~~~~~~~~~~~~~~ 77 (585)
T TIGR01192 7 YVRALSYLNVH-KNRVLLIVIANITLAAITIAEPILFGRIIDAISSKS----DV---L-PTLALWAGFGVFNTIAYVLVA 77 (585)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cH---H-HHHHHHHHHHHHHHHHHHHHH
Confidence 55677777665 445667778888888888889999999999864311 11 1 111122222333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 117 AFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVW 196 (782)
Q Consensus 117 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w 196 (782)
++...+..++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 78 ~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~-~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (585)
T TIGR01192 78 READRLAHGRRATLLTEAFGRIISMPLSWHQQ-RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDW 156 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666667779999999999999998 58999999999999999999988888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 197 QLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSG 276 (782)
Q Consensus 197 ~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~ 276 (782)
.+++++++++|+++++...+.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|.+..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (585)
T TIGR01192 157 RLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVL 236 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003976 277 VAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKEN 356 (782)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~ 356 (782)
+..+....+..++..+..++++++|++++.+|.+|+|++++++.+......|+..+...+..++.++.+++|+.++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~ 316 (585)
T TIGR01192 237 DWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSV 316 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777777777777778888899999999999999999998877777777889999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEE
Q 003976 357 SHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436 (782)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~ 436 (782)
++..+. ......+...+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 317 ~~~~~~--~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 317 FQREEP--ADAPELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred ccccCC--ccCCCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 543111 1111122335679999999999853 3489999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCC
Q 003976 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS 516 (782)
Q Consensus 437 i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LS 516 (782)
+||.|+++++.+++|++++||+|+|++|++||+|||.++.|++++++++++++.+++++++.++|+|+||.+|++|.+||
T Consensus 394 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LS 473 (585)
T TIGR01192 394 IDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLS 473 (585)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecCh
Q 003976 517 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 517 gGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~ 596 (782)
|||||||+||||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|++++.|+|
T Consensus 474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhhcCchhHHHHHhhh
Q 003976 597 VDLISKGGEYAALVNLQS 614 (782)
Q Consensus 597 ~eL~~~~~~y~~l~~~~~ 614 (782)
+|+++++|.|+++++.+.
T Consensus 554 ~~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 554 QELIQKDGRFYKLLRRSG 571 (585)
T ss_pred HHHHHCCChHHHHHHhCc
Confidence 999999999999998663
No 24
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.5e-89 Score=803.09 Aligned_cols=542 Identities=26% Similarity=0.385 Sum_probs=480.1
Q ss_pred HHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 003976 65 TLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMS 144 (782)
Q Consensus 65 ~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~ 144 (782)
+..+.|++++.++|.+.... . . ...+..++..++++.++..++.++..++....+.++..++|.++|+|++++|++
T Consensus 10 ~~~~~p~~~~~iid~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ 85 (569)
T PRK10789 10 LQLIPPKVVGIIVDGVTEQH--M-T-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPE 85 (569)
T ss_pred HHHHHHHHHHHHHHHhccCC--c-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 33445667889999764321 0 1 112223333344444556677788888888899999999999999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 145 FFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVG-FTSVWQLTLLTLAVVPLIAVAGGAYTITMSTL 223 (782)
Q Consensus 145 ~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~-~~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~ 223 (782)
||++ .++|++++|+++|++.++..+...+..++..++.++++++++ ++++|.+++++++++|+++++...+.++.++.
T Consensus 86 ~~~~-~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 86 FYLR-HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHcC-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 599999999999999999888887888887766666666555 58999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 224 SEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGI 303 (782)
Q Consensus 224 ~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~ 303 (782)
.++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.....+....+...+..+..++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888777777777777778888999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcCcEEEEeEE
Q 003976 304 LVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVC 383 (782)
Q Consensus 304 lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~ 383 (782)
++.+|.+|+|+++++..+......|+..+...+..+++++++++|+.++++.+++. +. .....+...++|+++||+
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~-~~---~~~~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVV-KD---GSEPVPEGRGELDVNIRQ 320 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc-cC---CCCCCCCCCCcEEEEEEE
Confidence 99999999999998888887778899999999999999999999999999876543 11 111122335689999999
Q ss_pred EEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCC
Q 003976 384 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPAL 463 (782)
Q Consensus 384 f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~l 463 (782)
|+|+....++|+|+||+|++|+++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+|+|
T Consensus 321 ~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 321 FTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred EECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99986444599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCC
Q 003976 464 FATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543 (782)
Q Consensus 464 f~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~ts 543 (782)
|++||+|||+++.|++++++++++++.+++++++.+||+|+||.+|++|.+|||||||||+||||++++|+|||||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHHhhhc
Q 003976 544 ALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS 615 (782)
Q Consensus 544 alD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~~~~~ 615 (782)
+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+++|+|+||+++++.|+++++.|..
T Consensus 481 ~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~ 552 (569)
T PRK10789 481 AVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQL 552 (569)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhhh
Confidence 999999999999999988899999999999999999999999999999999999999999999999987653
No 25
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-90 Score=756.58 Aligned_cols=573 Identities=26% Similarity=0.340 Sum_probs=483.5
Q ss_pred cchHHHHHhhcChhhH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHH
Q 003976 34 SGSFLSLFAAADKIDC----VLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVAL 109 (782)
Q Consensus 34 ~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~ 109 (782)
....+.+..|..+++. ..++.++++.+.+....-..|.+++..+|.+......+ ...+.....+..+.+..++..
T Consensus 10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~-a~~~~~~~~~~~y~iar~~s~ 88 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNP-AVLSTITALLAGYGIARLGSS 88 (591)
T ss_pred hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCc-chhhhhhHHHHHHHHHHHHHH
Confidence 3455666666554433 23344444444556666777888999999874211122 222333344556666777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 110 VSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFA 189 (782)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~ 189 (782)
+++.++...+.++.+++.++.-.+.|+|++.++.+||.+ ..+|++.+.+..-...|..++...+..++..++-+.....
T Consensus 89 ~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~-~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~ 167 (591)
T KOG0057|consen 89 VFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLS-RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSG 167 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcC-CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 5999999999999999999988888877777665444443
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Q 003976 190 V-GFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEA 268 (782)
Q Consensus 190 ~-~~~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~ 268 (782)
. ..-+.+..+++.+..+..+.........+-.+..++.+++.++++..+.|++.|-++||+||.|+++.++|...+.++
T Consensus 168 ~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~ 247 (591)
T KOG0057|consen 168 ILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTY 247 (591)
T ss_pred HHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3 334667777777777666666666666666677888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 269 LKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAAN 348 (782)
Q Consensus 269 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~r 348 (782)
.+.+.+.....++.......+.....+.+.+.|..=+.+|.+|+|+++.+.....+...|+..+...+..+.++..-+..
T Consensus 248 ~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~ 327 (591)
T KOG0057|consen 248 ERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRT 327 (591)
T ss_pred HHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHH
Confidence 99999988888777666666666666777777888788999999999888777778888999998888888888777776
Q ss_pred HHHHHhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 349 IISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 349 i~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++...+....+ .....++...++.|+|+||+|+|+++ .++|+++||+||+||+|||||+|||||||++++|+||+
T Consensus 328 ~~~l~~~~~~i----~~~~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~ 402 (591)
T KOG0057|consen 328 LFILLEVDEDI----QEAALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF 402 (591)
T ss_pred HHhhhhhhhhh----hhccCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 66654433222 11112334456789999999999743 24999999999999999999999999999999999999
Q ss_pred CCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccc
Q 003976 429 EPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQV 508 (782)
Q Consensus 429 ~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~v 508 (782)
| ++|+|+|||+||++++++++|+.|||||||..||++||.+||.||+|.+++||+.++||.+++||-|.+||+||+|.|
T Consensus 403 d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~V 481 (591)
T KOG0057|consen 403 D-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLV 481 (591)
T ss_pred c-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCC
Q 003976 509 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNG 588 (782)
Q Consensus 509 ge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G 588 (782)
||+|..||||||||++||||+++||||++||||||+||.+||+.+.+.+.+...+||+|+|+||++++++||+|+++++|
T Consensus 482 GerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG 561 (591)
T KOG0057|consen 482 GERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNG 561 (591)
T ss_pred hhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEEEecChhHHhhcCchhHHHHHhhh
Q 003976 589 QVVESGTHVDLISKGGEYAALVNLQS 614 (782)
Q Consensus 589 ~ive~G~~~eL~~~~~~y~~l~~~~~ 614 (782)
++.|.|+|+||++..+.|+++|..|.
T Consensus 562 ~v~e~gth~ell~~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 562 TVKEYGTHSELLAPSELYADLWTTQT 587 (591)
T ss_pred eeEEeccHHHHhhhhhHHHHHhcccc
Confidence 99999999999999999999997664
No 26
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.8e-88 Score=795.00 Aligned_cols=569 Identities=34% Similarity=0.525 Sum_probs=498.5
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 37 FLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGV 116 (782)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~ 116 (782)
++.++++.++. +..+.+.+++.++.+++....|++++.++|.+.... + ...+...+.+++++.++..++.+++.
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (576)
T TIGR02204 6 LAALWPFVRPY-RGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKD-S----SGLLNRYFAFLLVVALVLALGTAARF 79 (576)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc-c----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566665544 344556667777778888888889999999854211 1 11222233333444445566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 117 AFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVW 196 (782)
Q Consensus 117 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w 196 (782)
++...+++++..++|..+|++++++|.++|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 80 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (576)
T TIGR02204 80 YLVTWLGERVVADIRRAVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP 158 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88899999999999999999999999999998 58999999999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 197 QLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSG 276 (782)
Q Consensus 197 ~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~ 276 (782)
.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+++.|+.+.++|.+..++..+...+..
T Consensus 159 ~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (576)
T TIGR02204 159 KLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRI 238 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888889999999999999999999999999999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003976 277 VAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKEN 356 (782)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~ 356 (782)
........+..++.....++++++|++++.+|.+|+|.++++..+......|+..+...+..+++++.+++|+.++++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~ 318 (576)
T TIGR02204 239 RTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAE 318 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77666666665666677778889999999999999999988887777778899999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCC-CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEE
Q 003976 357 SHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435 (782)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I 435 (782)
++. +..........+..+.|+++||+|+||+++ +++|+|+||+|+|||++||+||||||||||+++|+|+|+|++|+|
T Consensus 319 ~~~-~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I 397 (576)
T TIGR02204 319 PDI-KAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397 (576)
T ss_pred CcC-CCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 543 111111111112346799999999998644 459999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCC
Q 003976 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 515 (782)
Q Consensus 436 ~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~L 515 (782)
++||+|+++++.+++|++|+||||+|++|++||+|||.+|+|+.++++++++++.+++++++.++|+|+||.+||+|.+|
T Consensus 398 ~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~L 477 (576)
T TIGR02204 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL 477 (576)
T ss_pred EECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecC
Q 003976 516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595 (782)
Q Consensus 516 SgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~ 595 (782)
||||||||+||||++++|||||||||||+||+++|+.+.+.|+++.+++|+|+||||++.++.||+|++|++|++++.|+
T Consensus 478 SgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeec
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred hhHHhhcCchhHHHHHhh
Q 003976 596 HVDLISKGGEYAALVNLQ 613 (782)
Q Consensus 596 ~~eL~~~~~~y~~l~~~~ 613 (782)
|++++++++.|+++++.|
T Consensus 558 ~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 558 HAELIAKGGLYARLARLQ 575 (576)
T ss_pred HHHHHHcCChHHHHHhhc
Confidence 999999999999998654
No 27
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.9e-87 Score=845.93 Aligned_cols=690 Identities=17% Similarity=0.195 Sum_probs=491.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 52 MFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLR 131 (782)
Q Consensus 52 ~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR 131 (782)
++.+.++.++..++....|++++.++|.+... +.. .. ...++..+++..++..++.....+...+.+.++...++
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~--~~~-~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~ 377 (1495)
T PLN03232 303 FWLGGIFKIGHDLSQFVGPVILSHLLQSMQEG--DPA-WV--GYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLV 377 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Ccc-ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666677889999976422 111 10 11111111111122222221122233577888888889
Q ss_pred HHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 003976 132 LKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVP---L 208 (782)
Q Consensus 132 ~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~p---l 208 (782)
..+|+|+++++..++++ .++|++++++++|++.+++.. ..+..++...+.+++++++++ +.+++..++.++ +
T Consensus 378 ~~i~~k~l~l~~~~~~~-~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~v~~l 452 (1495)
T PLN03232 378 AAIFHKSLRLTHEARKN-FASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSLILFL 452 (1495)
T ss_pred HHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHH
Confidence 99999999999999988 589999999999999999986 445555555444444443322 334443333222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 209 IAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYG 288 (782)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 288 (782)
++.+..++.+++++..++.++..++..+.+.|.++||++||+|++|+.+.+++.+..++..+...+.....+....+...
T Consensus 453 ~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~ 532 (1495)
T PLN03232 453 LIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNS 532 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345667788899999999999999999999999999999999999999999999888888777776665543332221
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 003976 289 LLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGI 368 (782)
Q Consensus 289 ~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~ 368 (782)
. ...+.++++|++++.+|.+|+|.+++++.++.....|+..++..+..+.+++++++|+.++++.+++. +.. . .
T Consensus 533 ~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~-~~~-~--~ 606 (1495)
T PLN03232 533 I--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERI-LAQ-N--P 606 (1495)
T ss_pred H--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc-ccc-c--C
Confidence 1 12334568899999999999999999888888888899999999999999999999999999876542 111 1 0
Q ss_pred CCCCCcCcEEEEeEEEEcCCCC-CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH
Q 003976 369 TLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL 447 (782)
Q Consensus 369 ~~~~~~g~i~~~~v~f~y~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~ 447 (782)
......+.|+|+||+|+|++++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|.+.
T Consensus 607 ~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----------- 675 (1495)
T PLN03232 607 PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----------- 675 (1495)
T ss_pred CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----------
Confidence 1111235799999999998643 3599999999999999999999999999999999999999998763
Q ss_pred HHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 448 KWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 448 ~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
++|++|+||+|+||||++||||||+||+| +++++++++++.|+++++++.||+|++|.|||+|.+|||||||||||||
T Consensus 676 -~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 753 (1495)
T PLN03232 676 -VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMAR 753 (1495)
T ss_pred -EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHH
Confidence 35678999999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHH-HHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchh
Q 003976 528 AVLRNPKILLLDEATSALDAESELIV-QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEY 606 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i-~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y 606 (782)
|+++|||||||||||||||+++++.+ +++++...++||+|+||||+++++.||+|++|++|+|+|+|+|+||+++++.|
T Consensus 754 Aly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~ 833 (1495)
T PLN03232 754 AVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLF 833 (1495)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhH
Confidence 99999999999999999999988866 56677777899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCCCcccCCCCCCCCCCCCC-CCcCc-cc--hh-hhhhhhhhccCCCCCCCCc-cHHHHHHHcccch
Q 003976 607 AALVNLQSSEHLSNPSSICYSGSSRYSSFRDFP-SSRRY-DV--EF-ESSKRRELQSSDQSFAPSP-SIWELLKLNAAEW 680 (782)
Q Consensus 607 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~--~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 680 (782)
+++++.+.......................... ..... .. .. ......++++. ..+.... .++++++...+ +
T Consensus 834 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~g~v~~~vy~~y~~~~~~-~ 911 (1495)
T PLN03232 834 KKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEER-ETGIISWNVLMRYNKAVGG-L 911 (1495)
T ss_pred HHHHHhcccccccccccccccccccccccccccccccccccccccccchhhhhhHHHH-hcCcccHHHHHHHHHHcCc-H
Confidence 999876542111100000000000000000000 00000 00 00 00000000000 1111122 23333432222 2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 681 PYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVR 760 (782)
Q Consensus 681 ~~~~~g~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr 760 (782)
+++.+.+++.++. .++......|++.|....... .....+|.++|++++++..++.+++.+++..++.++++++|
T Consensus 912 ~~~~~~~~~~~~~----~~~~~~~~~wl~~w~~~~~~~-~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr 986 (1495)
T PLN03232 912 WVVMILLVCYLTT----EVLRVSSSTWLSIWTDQSTPK-SYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLH 986 (1495)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhcccCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222 222222223333333221110 22356899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccc
Q 003976 761 LSMFSGSFIFSFQFYIL 777 (782)
Q Consensus 761 ~~~f~~il~~~~~fFd~ 777 (782)
+++|++++++|++|||.
T Consensus 987 ~~l~~~ll~~p~~ff~~ 1003 (1495)
T PLN03232 987 DAMLNSILRAPMLFFHT 1003 (1495)
T ss_pred HHHHHHHHcCCeeeeCc
Confidence 99999999999999954
No 28
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.4e-88 Score=856.86 Aligned_cols=507 Identities=22% Similarity=0.292 Sum_probs=445.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 100 YLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALR 179 (782)
Q Consensus 100 ~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~ 179 (782)
++++++++..++.++..+++...+.+...++|.++|++++++|++|||+ .++|++++|+++|++.+++.+...+..++.
T Consensus 1010 iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnR~s~Di~~id~~l~~~~~~~~~ 1088 (1522)
T TIGR00957 1010 VYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-TPSGNLVNRFSKELDTVDSMIPPVIKMFMG 1088 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777888888889999999999999999999999999998 599999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHH
Q 003976 180 YLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIE 259 (782)
Q Consensus 180 ~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~ 259 (782)
.++.+++.++++++.+|.++++++.++++++++..++.+..++..+...+..+...+.+.|+++|+++||+|++|+++.+
T Consensus 1089 ~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~ 1168 (1522)
T TIGR00957 1089 SLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIH 1168 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHH
Confidence 99999999999999999888877777777777777777777777777888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 260 SYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVR-HGDTNGGKAFTTIINVIFSGFALGQAAPNLAA 338 (782)
Q Consensus 260 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~-~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~ 338 (782)
++.+..+...+..........+......++ ..+++++.|+..+. .|.+++|.+.+++.+......++..+...+..
T Consensus 1169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~ 1245 (1522)
T TIGR00957 1169 QSDLKVDENQKAYYPSIVANRWLAVRLECV---GNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSE 1245 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888887777655544444333332222 22334445555554 57899999888878888778889999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC--CCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCc
Q 003976 339 IAKGKAAAANIISIIKENSHSSERPGDDGITLP--KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSG 416 (782)
Q Consensus 339 ~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~--~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsG 416 (782)
++++.+|++|+.++++.+++.... .+....++ +.+|+|+|+||+|+|+++.+++|+|+||+|+|||++|||||||||
T Consensus 1246 ~e~~~~s~eRi~~~~~~~~e~~~~-~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsG 1324 (1522)
T TIGR00957 1246 METNIVAVERLKEYSETEKEAPWQ-IQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAG 1324 (1522)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccc-ccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCC
Confidence 999999999999999876653110 01111111 346899999999999865556999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhH
Q 003976 417 KSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496 (782)
Q Consensus 417 KSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~ 496 (782)
||||+++|.|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||.... +++++++++|++.|++++|
T Consensus 1325 KSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~ 1403 (1522)
T TIGR00957 1325 KSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTF 1403 (1522)
T ss_pred HHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHH
Confidence 999999999999999999999999999999999999999999999999999999998543 5899999999999999999
Q ss_pred HhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 003976 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV 576 (782)
Q Consensus 497 i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i 576 (782)
|.++|+||||.|||+|.+||||||||||||||++++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++
T Consensus 1404 I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti 1483 (1522)
T TIGR00957 1404 VSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTI 1483 (1522)
T ss_pred HhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHHh
Q 003976 577 RDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL 612 (782)
Q Consensus 577 ~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~~ 612 (782)
.+||+|+|||+|+|+|.|+|+||++++|.|++|++.
T Consensus 1484 ~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1484 MDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 999999999999999999999999999999999865
No 29
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.2e-87 Score=779.50 Aligned_cols=525 Identities=26% Similarity=0.318 Sum_probs=465.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-ccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 51 LMFLGSLGAFIHGATLPVFFILFGRMIDSLG-HLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTAR 129 (782)
Q Consensus 51 ~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~-~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 129 (782)
.+.++++++++.+++.+..|+++++++|.+. ... . ...+..++.++++++++..++.+++.++....+.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02857 4 ALALLGLLGALGALLIIAQAWLLARVIDGLISAGE----P-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQ 78 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC----C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778888888889999999999873 211 1 122333444555666777888999999999999999999
Q ss_pred HHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 130 LRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLI 209 (782)
Q Consensus 130 lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~ 209 (782)
+|.++|+|++++|..+|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|++
T Consensus 79 lr~~l~~~l~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 79 LRERLLAAVAALGPGWLQG-RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHHhCCchhhcc-CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999998 599999999999999999999988899999988889999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 210 AVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGL 289 (782)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 289 (782)
.++...+.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.......+..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999999999999999999888888777776666666666
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 003976 290 LFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGIT 369 (782)
Q Consensus 290 ~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~ 369 (782)
..+..++++.++++.+.+|.+|+|.+++++.+......|+..+...+..+++++.+++|+.++++.+++. .. .. ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~-~~--~~-~~ 313 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPL-AG--KA-PV 313 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CC--Cc-CC
Confidence 6666666566677777799999999988877777777889999999999999999999999999854332 11 11 11
Q ss_pred CCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH
Q 003976 370 LPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW 449 (782)
Q Consensus 370 ~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~ 449 (782)
+....+.|+|+||+|+||++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.++
T Consensus 314 ~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 314 TAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS 393 (529)
T ss_pred CCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHH
Confidence 11123579999999999875446999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 450 LREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
+|++|+||+|||++|++||+|||++|.|++++++++++++.+++++|+++||+||||.+||+|.+|||||||||+||||+
T Consensus 394 lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal 473 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF 473 (529)
T ss_pred HHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEE
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 585 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl 585 (782)
+++|+|||||||||+||+++|+.+.+.|+++.+++|+|+||||+++++.||+|+||
T Consensus 474 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 474 LRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999999988899999999999999999999986
No 30
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.2e-86 Score=840.42 Aligned_cols=693 Identities=17% Similarity=0.191 Sum_probs=492.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 52 MFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLR 131 (782)
Q Consensus 52 ~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR 131 (782)
++++.++.++..++....|++++.++|.+... +. .. .... +++.+++..++..++..-..+....++.++...++
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~--~~-~~-~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~ 377 (1622)
T PLN03130 303 FWLGGFFKIGNDLSQFVGPLLLNLLLESMQNG--EP-AW-IGYI-YAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLV 377 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Cc-ch-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666777889999876432 11 11 1111 11111111111111111111123467888888899
Q ss_pred HHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 132 LKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAV 211 (782)
Q Consensus 132 ~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~~ 211 (782)
..+|+|+++++..++++ .++|++++++++|++.+++... .+..++...+.+++++++++..-...+++.++++.+++.
T Consensus 378 ~~i~~k~L~l~~~~~~~-~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~ 455 (1622)
T PLN03130 378 AAVFRKSLRLTHEGRKK-FTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFP 455 (1622)
T ss_pred HHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 5899999999999999999874 456566666666555555444222223333333334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 212 AGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLF 291 (782)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 291 (782)
+..++.+++++..++.++..++..+.+.|.++||++||+|++|+.+.+++.+..++..+...+.....++...+....
T Consensus 456 l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~-- 533 (1622)
T PLN03130 456 IQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSI-- 533 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 556677888888899999999999999999999999999999999999999988887777666665555433322221
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 003976 292 CAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLP 371 (782)
Q Consensus 292 ~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~ 371 (782)
...+.++++|++++.+|.+|+|.+++++..+.....|+..++..+..+.+++++++|+.++++.++.. +. .+. ...
T Consensus 534 ~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~-~~--~~~-~~~ 609 (1622)
T PLN03130 534 PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV-LL--PNP-PLE 609 (1622)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc-cc--cCC-ccc
Confidence 12345667899999999999999998887777778899999999999999999999999999765432 11 010 011
Q ss_pred CCcCcEEEEeEEEEcCCCC-CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCc-cEEEECCeeCCCcCHHH
Q 003976 372 KLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS-GKILLDGHDLKSLQLKW 449 (782)
Q Consensus 372 ~~~g~i~~~~v~f~y~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~-G~I~i~g~di~~~~~~~ 449 (782)
...+.|+++||+|+|++++ +++|+|+||+|++|+++|||||||||||||+++|+|+|+|++ |+|.+.|
T Consensus 610 ~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~---------- 679 (1622)
T PLN03130 610 PGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG---------- 679 (1622)
T ss_pred CCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC----------
Confidence 1235799999999998643 349999999999999999999999999999999999999999 9998654
Q ss_pred HHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 450 LREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
+|+||+|+||||++||||||+||+| .++++++++++.|+++++++.||+|++|.|||+|.+||||||||||||||+
T Consensus 680 ---~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl 755 (1622)
T PLN03130 680 ---TVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV 755 (1622)
T ss_pred ---eEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH
Confidence 7999999999999999999999987 689999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHH-HHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHH
Q 003976 530 LRNPKILLLDEATSALDAESELIV-QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAA 608 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i-~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~ 608 (782)
|+|||||||||||||||+++++.+ +++++...++||+|+||||+++++.||+|++|++|+|+++|+|+||+++++.|++
T Consensus 756 y~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~ 835 (1622)
T PLN03130 756 YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQK 835 (1622)
T ss_pred hCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHH
Confidence 999999999999999999988765 6788877889999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCCCccc--CCCCCCCCCCC--CCCCcCcc-chhhh--hhhhhhccCCCCCCCCc-cHHHHHHHcccch
Q 003976 609 LVNLQSSEHLSNPSSICY--SGSSRYSSFRD--FPSSRRYD-VEFES--SKRRELQSSDQSFAPSP-SIWELLKLNAAEW 680 (782)
Q Consensus 609 l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 680 (782)
+++.+............. ........... ........ ....+ ......++....+...+ .++++++.. +.+
T Consensus 836 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~-g~~ 914 (1622)
T PLN03130 836 LMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNAL-GGA 914 (1622)
T ss_pred HHHhcccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHh-ccH
Confidence 987543211110000000 00000000000 00000000 00000 00000000001111222 223333322 222
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 681 PYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVR 760 (782)
Q Consensus 681 ~~~~~g~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr 760 (782)
+++.+.+++.++. .++......|++.|.+.... ..+...+|.++|++++++.+++.+++++++...+.++++++|
T Consensus 915 ~~~~~~~~~~~~~----~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~ 989 (1622)
T PLN03130 915 WVVMILFLCYVLT----EVFRVSSSTWLSEWTDQGTP-KTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLH 989 (1622)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222 22222222233333221111 123356788899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccc
Q 003976 761 LSMFSGSFIFSFQFYIL 777 (782)
Q Consensus 761 ~~~f~~il~~~~~fFd~ 777 (782)
+++|++++++||+|||.
T Consensus 990 ~~l~~~ll~~p~~ffd~ 1006 (1622)
T PLN03130 990 DAMLGSILRAPMSFFHT 1006 (1622)
T ss_pred HHHHHHHHcCCHHHhcc
Confidence 99999999999999964
No 31
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.7e-86 Score=797.78 Aligned_cols=639 Identities=22% Similarity=0.279 Sum_probs=486.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 119 WMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQL 198 (782)
Q Consensus 119 ~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L 198 (782)
..+.+-++-..+-..+|+|.+++.-.--.. .+.|++++-++.|++++.++.. .+..+....+.+++++.+++..-..-
T Consensus 266 ~~~~g~r~R~al~~~IY~K~L~ls~~~~~~-~t~G~ivNlms~D~~ri~~~~~-~~h~~w~~Plqi~~~l~lLy~~LG~s 343 (1381)
T KOG0054|consen 266 SFRVGMRLRSALISAIYRKALRLSNSARGE-TTVGEIVNLMSVDAQRLSDAAC-FLHLLWSAPLQIILALYLLYGLLGPS 343 (1381)
T ss_pred HHhhhhhHHHHHHHHHHHhhhcCchhhccC-CCcchhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 344555555566667899999998877545 4899999999999999999875 34555556666666666665544445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 199 TLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVA 278 (782)
Q Consensus 199 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~ 278 (782)
+++.++++.+++.+..++++++++.+.+.++..++..+.++|.++|||+||.|+||+.+.++..+..++..+.-.|.+..
T Consensus 344 a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~ 423 (1381)
T KOG0054|consen 344 ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYL 423 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777788888999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 003976 279 KGIGVGLTYGLLFCAWALLLWYAGIL-VRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENS 357 (782)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~G~~l-v~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~ 357 (782)
.++...+..+...+..++.| +++. ...+.+|+..+|+.+..+.....|+..++..+..+.++.++.+|+.+++..++
T Consensus 424 ~~~~~~~~~~~p~lv~~~tF--~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e 501 (1381)
T KOG0054|consen 424 SALNSFLNFFSPVLVSVVTF--VVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEE 501 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 88776665555555544444 4444 45667888888988888888889999999999999999999999999997754
Q ss_pred CCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCC-CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEE
Q 003976 358 HSSERPGDDGITLPKLAGQIEFSEVCFAYPSR-PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436 (782)
Q Consensus 358 ~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~ 436 (782)
.. +.........+.+..|+++|.+|+|.+. +++.|+||||+|++|+.+|||||+|||||||+.+|+|++++.+|+|.
T Consensus 502 ~~--~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~ 579 (1381)
T KOG0054|consen 502 LD--PDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVA 579 (1381)
T ss_pred cC--ccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEE
Confidence 32 1111101122233469999999999763 33499999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCC
Q 003976 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS 516 (782)
Q Consensus 437 i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LS 516 (782)
++| .++||||+||+|||||||||.||.| .++++++++.+.|++.++++.||.|+.|+|||||.+||
T Consensus 580 v~g-------------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLS 645 (1381)
T KOG0054|consen 580 VNG-------------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLS 645 (1381)
T ss_pred EcC-------------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCc
Confidence 999 4999999999999999999999987 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEeCCCCCCCHH-HHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecC
Q 003976 517 GGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595 (782)
Q Consensus 517 gGQkQRiaiARAl~~~p~illLDE~tsalD~~-~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~ 595 (782)
|||||||+||||+|+|+||+|||||.||||+| +.+.+.+||+...++||+|+|||+++.+++||+|+||++|+|+++|+
T Consensus 646 GGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gt 725 (1381)
T KOG0054|consen 646 GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGT 725 (1381)
T ss_pred HhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccC
Confidence 99999999999999999999999999999999 77888999999999999999999999999999999999999999999
Q ss_pred hhHHhhcCchhHHHHHhhhcccCCCCCCcccCC-CCCCCC-CCCCCC----CcCccchhhhhhhhhhccCCCCCCCCc-c
Q 003976 596 HVDLISKGGEYAALVNLQSSEHLSNPSSICYSG-SSRYSS-FRDFPS----SRRYDVEFESSKRRELQSSDQSFAPSP-S 668 (782)
Q Consensus 596 ~~eL~~~~~~y~~l~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 668 (782)
|+||++.++.|.++......+..........+. ...... .+.... .+........++....+++...+...+ .
T Consensus 726 y~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~v 805 (1381)
T KOG0054|consen 726 YEELLKSGGDFAELAHEEESEQEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSV 805 (1381)
T ss_pred HHHHHhcchhHHHHhhccchhhccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHH
Confidence 999999999999985443322221100000000 000000 000000 000000000000000011111222222 2
Q ss_pred HHHHHHHcccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhh--hhHhHHHHHHHHHHHHHHHHHHHHHH
Q 003976 669 IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIK--RVVDQVALIFVGLAVVTIPVYLLQHY 746 (782)
Q Consensus 669 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~ 746 (782)
++++++. ...+....+-+++.+.... +......|++.|......... ....+|.++|.++++++.++.+++++
T Consensus 806 Y~~Y~~a-~~g~~~~~~~~~~~v~~~~----~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~ 880 (1381)
T KOG0054|consen 806 YKKYIKA-AGGFLLVLLILLLFVLTQV----LQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSF 880 (1381)
T ss_pred HHHHHHh-cccHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 2222222211222222222 222222344444332211111 46778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccc-------cccCCCC
Q 003976 747 FYTLMGEHLTARVRLSMFSGSFIFSFQFY-------ILNAFTD 782 (782)
Q Consensus 747 ~~~~~~~~~~~~lr~~~f~~il~~~~~fF-------d~nrfs~ 782 (782)
.|.+.|.+.+++||++||++++|+||+|| ++|||||
T Consensus 881 ~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSk 923 (1381)
T KOG0054|consen 881 LFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSK 923 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhccc
Confidence 99999999999999999999999999999 6799997
No 32
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.9e-86 Score=843.61 Aligned_cols=508 Identities=22% Similarity=0.275 Sum_probs=411.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 97 HALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGH 176 (782)
Q Consensus 97 ~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~ 176 (782)
+.+++++++++..++.+++.+++...+.+...++|.++|++++++|++|||+ .++|++++|+++|++.+++.+...+..
T Consensus 955 ~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~~~G~IlnR~s~Di~~id~~l~~~~~~ 1033 (1622)
T PLN03130 955 YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-NPLGRIINRFAKDLGDIDRNVAVFVNM 1033 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777888888889999999999999999999999999999999 599999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH
Q 003976 177 ALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLI-AVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 255 (782)
Q Consensus 177 ~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~ 255 (782)
++..++.+++.++++++++|...++ ++.++++ ++...++.+..++..+......+...+.+.|+++|++|||+|+.++
T Consensus 1034 ~~~~~~~~i~~~i~i~~~~~~~~~~-~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~ 1112 (1622)
T PLN03130 1034 FLGQIFQLLSTFVLIGIVSTISLWA-IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1112 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHH
Confidence 9999999898888888888743333 3223332 2233344455555666666677889999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHHH
Q 003976 256 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGD---------TNGGKAFTTIINVIFSG 326 (782)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~---------~t~G~l~~~~~~~~~~~ 326 (782)
++.+++.+..+...+..........+.... +..+..+++++.|...+..+. .++|.+++ +.+...
T Consensus 1113 ~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~---l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls---~~~~~~ 1186 (1622)
T PLN03130 1113 RMAEINGRSMDNNIRFTLVNMSSNRWLAIR---LETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLS---YALNIT 1186 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHH---HHHHHH
Confidence 777666665555444332222111111111 111222222333334444332 23343333 233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC--CCCcCcEEEEeEEEEcCCCCCcccccceEEeeCC
Q 003976 327 FALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITL--PKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAG 404 (782)
Q Consensus 327 ~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~--~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G 404 (782)
.++..+...+..++++.+|.+|+.++++.+++.++. .++..++ .+.+|.|+|+||+|+|+++.++||+|+||+|+||
T Consensus 1187 ~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~-~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~G 1265 (1622)
T PLN03130 1187 SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLV-IENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPS 1265 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccc-ccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCC
Confidence 455666667778899999999999999876653111 1111111 1346899999999999754446999999999999
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHH
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRV 484 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i 484 (782)
|+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||.||+|||||||.++. +++++++
T Consensus 1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei 1344 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADL 1344 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 4799999
Q ss_pred HHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCC
Q 003976 485 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 564 (782)
Q Consensus 485 ~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~ 564 (782)
++|++.|++++||.+||+||||.|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|+++|++..+++
T Consensus 1345 ~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~ 1424 (1622)
T PLN03130 1345 WESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1424 (1622)
T ss_pred HHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhc-CchhHHHHHhhh
Q 003976 565 TTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQS 614 (782)
Q Consensus 565 T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~-~~~y~~l~~~~~ 614 (782)
|+|+||||++|+++||+|+||++|+|+|.|+|+||+++ +|.|++|++...
T Consensus 1425 TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1425 TMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 99999999999999999999999999999999999987 699999987553
No 33
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-88 Score=720.72 Aligned_cols=492 Identities=30% Similarity=0.423 Sum_probs=441.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 003976 116 VAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFF-VGFAVGFTS 194 (782)
Q Consensus 116 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i-~~~~~~~~~ 194 (782)
..++...++...+.+-.+.|.|++++++.|+-++ .+|.+...+.....-|+..+...+..++..++-+. ++.++...+
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 3456677888888999999999999999999984 89988888877777777777777777777666443 344455678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 003976 195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK 274 (782)
Q Consensus 195 ~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k 274 (782)
+|+.+++.++++.+++++.......-....++.+++.+++++...+++-+.+|||.||.|+.+..+|.+.++.+.+...|
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999999888887776666666667778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003976 275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK 354 (782)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~ 354 (782)
.....+++......+...........++..+..|.+|+|+++..-.++.....|+..++.....+.+++.-.++.+++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 88777776666666666777777788899999999999999887777778888999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCC-CCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc
Q 003976 355 ENSHSSERPGDDGITLP-KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433 (782)
Q Consensus 355 ~~~~~~~~~~~~~~~~~-~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G 433 (782)
.+.+..+. ++..+.. ...|.|.|+||+|.|..+ .++|+|+||++++|+++|+|||||+||||++++|.||||+++|
T Consensus 242 ~~~~v~d~--pda~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 242 VEAEVSDA--PDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred cchhhccC--CCCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 88776332 2222222 346889999999999654 3599999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCC
Q 003976 434 KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513 (782)
Q Consensus 434 ~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~ 513 (782)
.|.+||+||++...+++|+.||+||||..||++|+..||.||+|+++++|+..|++.|++|+||++||+||||.|||+|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEe
Q 003976 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 593 (782)
Q Consensus 514 ~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~ 593 (782)
.||||+|||+||||+++++|+||+|||||||||.+||+.||.+|++..+|+|+++|||||||+-+||.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhhcCchhHHHHH
Q 003976 594 GTHVDLISKGGEYAALVN 611 (782)
Q Consensus 594 G~~~eL~~~~~~y~~l~~ 611 (782)
|+|+||++.+|.|++||.
T Consensus 479 g~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLAAGGLYAEMWR 496 (497)
T ss_pred CcHHHHHHcCChHHHHhc
Confidence 999999999999999985
No 34
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.9e-85 Score=763.65 Aligned_cols=533 Identities=22% Similarity=0.293 Sum_probs=463.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 52 MFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLR 131 (782)
Q Consensus 52 ~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR 131 (782)
+++.++++++..++....|+++++++|.+.... + ...+..+...++++.++..++.+++.++....+.++..++|
T Consensus 8 ~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 8 FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-S----VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666667778899999764211 1 12233334444445556677888889999999999999999
Q ss_pred HHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 132 LKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGD-KTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIA 210 (782)
Q Consensus 132 ~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~-~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~ 210 (782)
.++|+|++++|+.. .++..+++++|++.+++.+.. .+..++..+..+ +.++++++++|++++++++.+|+++
T Consensus 83 ~~~~~~ll~~~~~~------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 83 QPIFAASFSATLRR------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMP-IYLLVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHHhcCcccC------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999832 345688899999999998877 344444444444 4456789999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 211 VAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLL 290 (782)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 290 (782)
++..++.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|.+..++..+...+.....+....+..++.
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88788888888888899999999999999999999999999999999999999999999888888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 003976 291 FCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITL 370 (782)
Q Consensus 291 ~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 370 (782)
.+..++++++|++++.+|.+|+|++++++.+......|+..+...+..+++++.+.+|+.++++.+++. +. . ...
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~-~~--~--~~~ 310 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSR-DP--A--MPL 310 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc-cC--C--CCC
Confidence 777788899999999999999999999888877778899999999999999999999999999876543 11 1 112
Q ss_pred CCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH
Q 003976 371 PKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 450 (782)
Q Consensus 371 ~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l 450 (782)
+...+.|+++||+|+||+.+.++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++
T Consensus 311 ~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 22346799999999998654569999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 451 REQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 451 R~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
|++|+||||+|++|++|++|||+++.+++++++++++++.+++++++++||+|+||.+||+|.+|||||||||+||||++
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999888778999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhh
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
++|+|||||||||+||+++++.+.+.|+++. +++|+|+||||+++++.||+|++|++|++++.|+|+|+++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999999885 6899999999999999999999999999999999999975
No 35
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-85 Score=715.64 Aligned_cols=555 Identities=22% Similarity=0.299 Sum_probs=467.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 48 DCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQT 127 (782)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~ 127 (782)
++..+.++++++++..++...+..+.||+|..-... +....-.+...+..+=++++...+..|+.....+...-++.
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia---g~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL 90 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA---GLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVL 90 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 355677888888877777777777789998863211 11000011111222234566777888999999999999999
Q ss_pred HHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 003976 128 ARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVV- 206 (782)
Q Consensus 128 ~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~- 206 (782)
.+||.++|+++...++.-... .++||+++|+..|++.+++.+-..+...+..++.+.+..+.+-+++|.+++.+...+
T Consensus 91 ~~lRv~~f~kl~p~sp~~~~r-~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll 169 (573)
T COG4987 91 SALRVRLFEKLEPLSPALLLR-YRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILL 169 (573)
T ss_pred HHHHHHHHHhhccCChHHHHh-cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999887 699999999999999999999888888888887777777777788999887665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 207 PLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLT 286 (782)
Q Consensus 207 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 286 (782)
.+.+++..++.+.-++..++..+..+...+.+.|.+.|....+.||+++.+.+.+.+....+.+...|.+.+.++...+.
T Consensus 170 ~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~ 249 (573)
T COG4987 170 LLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL 249 (573)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777888888888888999999999999999999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 003976 287 YGLLFCAWA-LLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA-PNLAAIAKGKAAAANIISIIKENSHSSERPG 364 (782)
Q Consensus 287 ~~~~~~~~~-~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~-~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~ 364 (782)
.++..+..+ +++|.+ -.+-.|..+......+++.++....++.-+. ..+....+...++.|+.++++++++... +
T Consensus 250 ~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~--~ 326 (573)
T COG4987 250 LLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTF--P 326 (573)
T ss_pred HHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCC--C
Confidence 777766665 455544 4455666664333333333233333333333 4557788999999999999999887622 1
Q ss_pred CCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC
Q 003976 365 DDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS 444 (782)
Q Consensus 365 ~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~ 444 (782)
. ...+...+ .++++||+|+||+.+.++|+|+||++++||+|||+|+|||||||++++|.|-|+|++|+|.++|.|+++
T Consensus 327 ~-~~~~~~~~-~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 327 D-EQTATTGQ-ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404 (573)
T ss_pred c-cccCCccc-eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence 1 11111112 799999999999877679999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 445 LQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 445 ~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
++.+.+|+.|++++|.++||++|+|||+++++|+++||+++++++.+++++++++.|+||+|.+||+|.+||||||||+|
T Consensus 405 l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred CChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCc
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGG 604 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~ 604 (782)
|||+|++|+|++||||||.+||++||+.+.+.|.+..+|||+|+||||+..++.||+|+|||+|+|+|+|+|+||++++|
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g 564 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNG 564 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHH
Q 003976 605 EYAALVN 611 (782)
Q Consensus 605 ~y~~l~~ 611 (782)
.|+++++
T Consensus 565 ~~~~l~q 571 (573)
T COG4987 565 RYKRLYQ 571 (573)
T ss_pred HHHHHhc
Confidence 9999975
No 36
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.3e-85 Score=828.64 Aligned_cols=509 Identities=21% Similarity=0.247 Sum_probs=428.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 103 YLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLS 182 (782)
Q Consensus 103 ~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~ 182 (782)
++.++..++.++..++....+.+...++|.++|++++++|+.|||+ .++|++++|+++|++.+++.+...+..++..++
T Consensus 1006 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~ 1084 (1560)
T PTZ00243 1006 GIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-TPLGRILNRFSRDIDILDNTLPMSYLYLLQCLF 1084 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-CCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555556677778899999999999999999999 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHH
Q 003976 183 QFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYS 262 (782)
Q Consensus 183 ~~i~~~~~~~~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~ 262 (782)
.+++.++++++.+|.+.++++.++.+++.+..++.+..++..+......+...+.+.|+++|+++||+|+.|+.+.++|.
T Consensus 1085 ~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~ 1164 (1560)
T PTZ00243 1085 SICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEAL 1164 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHH
Confidence 99999999999998655544444334444556666777777777778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 263 HSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILV--RHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIA 340 (782)
Q Consensus 263 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv--~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~ 340 (782)
+..+...+...+......+......++..+..+++.++|.... ..+.+++|.+..++.+......++..+...+..++
T Consensus 1165 ~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le 1244 (1560)
T PTZ00243 1165 RRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVE 1244 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888877766555544444444444444334444444333 34557888776666666666778888899999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCC-------------------------CCCCC---CCCCCcCcEEEEeEEEEcCCCCCc
Q 003976 341 KGKAAAANIISIIKENSHSSERP-------------------------GDDGI---TLPKLAGQIEFSEVCFAYPSRPHM 392 (782)
Q Consensus 341 ~a~~a~~ri~~~l~~~~~~~~~~-------------------------~~~~~---~~~~~~g~i~~~~v~f~y~~~~~~ 392 (782)
++..+.+|+.++++..++...+. +.... +..+..|.|+|+||+|+|+++.++
T Consensus 1245 ~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~ 1324 (1560)
T PTZ00243 1245 ADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPL 1324 (1560)
T ss_pred HHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCc
Confidence 99999999999997543210000 00000 011235789999999999765445
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 472 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi 472 (782)
+|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||
T Consensus 1325 vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNI 1404 (1560)
T PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV 1404 (1560)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC-CceEEEeCCCCCCCHHHHH
Q 003976 473 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN-PKILLLDEATSALDAESEL 551 (782)
Q Consensus 473 ~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~-p~illLDE~tsalD~~~e~ 551 (782)
.++. +++++++++|++.|++++||.+||+||||.|||+|.+|||||||||||||||+++ |+|||||||||+||+++|+
T Consensus 1405 dp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~ 1483 (1560)
T PTZ00243 1405 DPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDR 1483 (1560)
T ss_pred Cccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHH
Confidence 9864 5899999999999999999999999999999999999999999999999999996 8999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhc-CchhHHHHHhh
Q 003976 552 IVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQ 613 (782)
Q Consensus 552 ~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~-~~~y~~l~~~~ 613 (782)
.|+++|++..+++|+|+||||++++++||+|+||++|+|+|.|+|+||+++ +|.|++|++.+
T Consensus 1484 ~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1484 QIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999899999999999999999999999999999999999999985 89999999765
No 37
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.6e-85 Score=829.91 Aligned_cols=511 Identities=22% Similarity=0.291 Sum_probs=412.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 97 HALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGH 176 (782)
Q Consensus 97 ~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~ 176 (782)
+...+++++++..++.+++.++....+.+...++|.+++++++++|++|||+ .++|++++|+++|++.+++.+...+..
T Consensus 952 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~~~G~ilnr~s~Di~~id~~l~~~~~~ 1030 (1495)
T PLN03232 952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTGRVINRFSKDIGDIDRNVANLMNM 1030 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-CCchHHHHHhHhhHHHHHHHHHHHHHH
Confidence 4455566677778888888889999999999999999999999999999998 599999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH
Q 003976 177 ALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAV-AGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 255 (782)
Q Consensus 177 ~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~ 255 (782)
++..++.++++++++++.+|...+++ +.++++++ ...++.+..++..+......+...+.+.|+++|+++||+|+.++
T Consensus 1031 ~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~ 1109 (1495)
T PLN03232 1031 FMNQLWQLLSTFALIGTVSTISLWAI-MPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYD 1109 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHH
Confidence 88888888888888877776433332 22222222 22333344455666667778889999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC----HHHHHH-HHHHHHHHHHHH
Q 003976 256 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVR-HGDTN----GGKAFT-TIINVIFSGFAL 329 (782)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~-~g~~t----~G~l~~-~~~~~~~~~~~l 329 (782)
++.+++.+..+...+..........+.. ..+..+..+++++.|...+. .|.+. .+..+. ++.+......++
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 1186 (1495)
T PLN03232 1110 RMAKINGKSMDNNIRFTLANTSSNRWLT---IRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLL 1186 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHH
Confidence 8777777666555544332222211111 11112222222333344443 23321 112222 222333444567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC--CCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEE
Q 003976 330 GQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITL--PKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTF 407 (782)
Q Consensus 330 ~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~--~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~v 407 (782)
..+...+..++.+.++.+|+.++++.+++.++.. ....++ .+..|+|+|+||+|+|+++.+++|+|+||+|+|||++
T Consensus 1187 ~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~-~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~Gekv 1265 (1495)
T PLN03232 1187 SGVLRQASKAENSLNSVERVGNYIDLPSEATAII-ENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKV 1265 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-cCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEE
Confidence 7888888899999999999999998776541110 111111 1346889999999999654345999999999999999
Q ss_pred EEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHH
Q 003976 408 AFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEA 487 (782)
Q Consensus 408 aivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a 487 (782)
|||||||||||||+++|+|+|+|++|+|+|||+|++++++++||++|++|||||+||+|||||||.+++ +++++|+++|
T Consensus 1266 aIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~a 1344 (1495)
T PLN03232 1266 GVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEA 1344 (1495)
T ss_pred EEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 5899999999
Q ss_pred HHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEE
Q 003976 488 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTI 567 (782)
Q Consensus 488 ~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i 567 (782)
++.|++++||.++|+||||.|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|+++|++..+++|+|
T Consensus 1345 l~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI 1424 (1495)
T PLN03232 1345 LERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTML 1424 (1495)
T ss_pred HHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred EEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcC-chhHHHHHhhh
Q 003976 568 VVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG-GEYAALVNLQS 614 (782)
Q Consensus 568 ~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~-~~y~~l~~~~~ 614 (782)
+||||++++++||+|+||++|+|+|.|+|+||++++ +.|++|++.+.
T Consensus 1425 ~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1425 VIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred EEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 999999999999999999999999999999999886 59999997653
No 38
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=7.7e-81 Score=727.18 Aligned_cols=535 Identities=17% Similarity=0.161 Sum_probs=448.2
Q ss_pred chHHHHHhhcC-hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003976 35 GSFLSLFAAAD-KIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAW 113 (782)
Q Consensus 35 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~ 113 (782)
..+++++++++ ++ +..++++++++++.+++....+.+++.++|.... .. . .. ..+++++.++.+++.+
T Consensus 3 ~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~---~~-~--~~----~~~~~~~~~~~~~~~~ 71 (555)
T TIGR01194 3 AAIGEILALLRSPF-PAITAFSIALGLAGGLAIIALLASINNAIHEENF---LG-Q--GS----LFSFGGLCLLALLFRI 71 (555)
T ss_pred chHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---cc-c--hH----HHHHHHHHHHHHHHHH
Confidence 34677888877 54 5566677777777777777777777777764210 00 0 01 1223334455667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 114 IGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFT 193 (782)
Q Consensus 114 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~ 193 (782)
+..++....+.++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+.. +..++..+++++++++++++
T Consensus 72 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~ 149 (555)
T TIGR01194 72 GADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR-RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAY 149 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh-cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999998 59999999999999999999864 77788888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHHHHHHHHHHH
Q 003976 194 SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA--KAIESYSHSLKEALKQ 271 (782)
Q Consensus 194 ~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~--~~~~~~~~~~~~~~~~ 271 (782)
++|.+++++++.+|+.+++..++.++.++...+.++..++.++.+.|.+.|+++||+|+.++ .+.++|.+..++..+.
T Consensus 150 ~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
T TIGR01194 150 LSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADL 229 (555)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999988888888888888888999999999999999999999999999954 5678898888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 272 GKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIIS 351 (782)
Q Consensus 272 ~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~ 351 (782)
..+.....+...++..++..+..++.+|+|++. |.+|+|++++++.+......|+..+...+..+++++++++|+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ 306 (555)
T TIGR01194 230 HIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLAD 306 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665555444544455455555556666654 78999999998888888888999999999999999999999999
Q ss_pred HHhccCCC-CCC--CCCCCC---CCCCCcCcEEEEeEEEEcCCCC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHH
Q 003976 352 IIKENSHS-SER--PGDDGI---TLPKLAGQIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIIS 422 (782)
Q Consensus 352 ~l~~~~~~-~~~--~~~~~~---~~~~~~g~i~~~~v~f~y~~~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ 422 (782)
+++.+++. ... ...+.. .+....++|+++||+|+|++.+ .++|+|+||++++||++|||||||||||||++
T Consensus 307 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ 386 (555)
T TIGR01194 307 FGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAK 386 (555)
T ss_pred HHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHH
Confidence 98642111 000 000000 1112346799999999998532 24999999999999999999999999999999
Q ss_pred HHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCC
Q 003976 423 MVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD 502 (782)
Q Consensus 423 ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~ 502 (782)
+|+|+|+|++|+|.+||.|+++++.+++|+++++|+|||+||++|+++|+ .+++++++++++++.+++++++.++|+
T Consensus 387 ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~ 463 (555)
T TIGR01194 387 LFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDG 463 (555)
T ss_pred HHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhccccc
Confidence 99999999999999999999999999999999999999999999999995 466889999999999999999999999
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHH-HH-hCCCeEEEEecCcchhhhcC
Q 003976 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE-KI-MSNRTTIVVAHRLSTVRDVD 580 (782)
Q Consensus 503 G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~-~~-~~~~T~i~iaHrl~~i~~aD 580 (782)
||||. .+|||||||||+||||++++|||||||||||+||+++|+.+++.+. .. .+++|+|+||||+++++.||
T Consensus 464 g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d 538 (555)
T TIGR01194 464 GFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELAD 538 (555)
T ss_pred ccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCC
Confidence 99995 7899999999999999999999999999999999999999998774 33 46899999999999999999
Q ss_pred EEEEEeCCEEEEe
Q 003976 581 TIMVLKNGQVVES 593 (782)
Q Consensus 581 ~I~vl~~G~ive~ 593 (782)
+|++|++|+|+|.
T Consensus 539 ~i~~l~~G~i~~~ 551 (555)
T TIGR01194 539 QIIKLAAGCIVKD 551 (555)
T ss_pred EEEEEECCEEEEe
Confidence 9999999999874
No 39
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.5e-78 Score=770.08 Aligned_cols=694 Identities=17% Similarity=0.174 Sum_probs=487.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 54 LGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLK 133 (782)
Q Consensus 54 ~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~ 133 (782)
.+++..++..++....|++++.++|.+.... ++ . .....++..++++.++..++.....+...+.+.++...++..
T Consensus 321 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~-~~-~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~ 396 (1522)
T TIGR00957 321 MSFCFKAIHDLMMFIGPQILSLLIRFVNDPM-AP-D--WQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGA 396 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cc-c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444545555556667889998764321 11 0 001111222222222333333333444567789999999999
Q ss_pred HHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 134 YLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAG 213 (782)
Q Consensus 134 ~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~~~~ 213 (782)
+|+|+++++..++++ .++|++++++++|++.+.+.. ..+..++...+.+++++++++..-...+++.++++++++.+.
T Consensus 397 iy~K~L~l~~~~~~~-~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~ 474 (1522)
T TIGR00957 397 VYRKALVITNSARKS-STVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLN 474 (1522)
T ss_pred HHHHHHhCChhhcCC-CCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999988 589999999999999998865 345555555555555555444333334455566667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 214 GAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCA 293 (782)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 293 (782)
.++.+++++..++.++..++..+.+.|.++||++||+|++|+.+.+++.+..++..+...+......+......... .
T Consensus 475 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 552 (1522)
T TIGR00957 475 AVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTP--F 552 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 88888999999999999999999999999999999999999999999999988887776666655544322211111 1
Q ss_pred HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 003976 294 WALLLWYAGILVRH--GDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLP 371 (782)
Q Consensus 294 ~~~~l~~G~~lv~~--g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~ 371 (782)
.+.++.++.+.+.. +.++.+.+++.+.++.....|+..+...+..+.+++++.+||.++++.+++. +.........
T Consensus 553 ~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~--~~~~~~~~~~ 630 (1522)
T TIGR00957 553 LVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELE--PDSIERRTIK 630 (1522)
T ss_pred HHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc--cccccccccC
Confidence 22233355666663 5688998888776666677899999999999999999999999999765432 1100001111
Q ss_pred -CCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH
Q 003976 372 -KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 450 (782)
Q Consensus 372 -~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l 450 (782)
...+.|+++|++|+|++..+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 631 ~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------- 699 (1522)
T TIGR00957 631 PGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----------- 699 (1522)
T ss_pred CCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----------
Confidence 11247999999999985444599999999999999999999999999999999999999999999998
Q ss_pred HhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 451 REQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 451 R~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
+|+||+|+|++|++||+|||.+|.+ .+++++.++++.|++.+++..+|+|++|.+|++|.+|||||||||+||||++
T Consensus 700 --~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~ 776 (1522)
T TIGR00957 700 --SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY 776 (1522)
T ss_pred --EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHh
Confidence 5999999999999999999999986 5778899999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHH---HhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhH
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEK---IMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 607 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~---~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~ 607 (782)
++|+|+||||||||||+++++.+.+.+.+ +.+++|+|+|||+++.++.||+|++|++|+|+++|+|+|++++++.|.
T Consensus 777 ~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~ 856 (1522)
T TIGR00957 777 SNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFA 856 (1522)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHH
Confidence 99999999999999999999999998853 457899999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCC-CCc-------ccCCCC--C---------CCCCCC----CCCC-cC-------c---cchhhh-h-
Q 003976 608 ALVNLQSSEHLSNP-SSI-------CYSGSS--R---------YSSFRD----FPSS-RR-------Y---DVEFES-S- 651 (782)
Q Consensus 608 ~l~~~~~~~~~~~~-~~~-------~~~~~~--~---------~~~~~~----~~~~-~~-------~---~~~~~~-~- 651 (782)
++...+..+..... ... ...... + ...... .... .. . ...... .
T Consensus 857 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1522)
T TIGR00957 857 EFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEET 936 (1522)
T ss_pred HHHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccch
Confidence 98864432111000 000 000000 0 000000 0000 00 0 000000 0
Q ss_pred hhhhhccCCCCCCCCc-cHHHHHHHcccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCc-hhhhhhHhHHHHH
Q 003976 652 KRRELQSSDQSFAPSP-SIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHD-SQIKRVVDQVALI 729 (782)
Q Consensus 652 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 729 (782)
.....++....+.... .++.+++.. + +.+.++.++..++..+..-...+ |++.|..... ........+|..+
T Consensus 937 ~~~~~~e~~~~g~v~~~~y~~Y~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~----~l~~w~~~~~~~~~~~~~~~~~~i 1010 (1522)
T TIGR00957 937 WKLMEADKAQTGQVELSVYWDYMKAI-G-LFITFLSIFLFVCNHVSALASNY----WLSLWTDDPMVNGTQNNTSLRLSV 1010 (1522)
T ss_pred hhhHHHHHHhcCcccHHHHHHHHHHc-C-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccccccCCCCCcchHHHH
Confidence 0000000001111111 222233221 1 22211111111111111111222 3333322111 0011234567779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Q 003976 730 FVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSGSFIFSFQFYIL 777 (782)
Q Consensus 730 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~f~~il~~~~~fFd~ 777 (782)
|++++++.+++.+++.+++.+++.++++++|+++|++++++|++|||.
T Consensus 1011 y~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~ 1058 (1522)
T TIGR00957 1011 YGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER 1058 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc
Confidence 999999999999999999999999999999999999999999999954
No 40
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.1e-79 Score=777.75 Aligned_cols=502 Identities=19% Similarity=0.215 Sum_probs=416.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 106 LVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFF 185 (782)
Q Consensus 106 i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i 185 (782)
++..++.+++.+++.+.+.+...++|.++++++++.|+.||++ .++|++++|+++|++.+++.+...+..++..++.++
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i 1014 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVL 1014 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777888888999999999999999999999999999 599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH
Q 003976 186 VGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSL 265 (782)
Q Consensus 186 ~~~~~~~~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~ 265 (782)
+.++++++++|.++++++.++.+++++..++.+..++..+......+...+.+.|+++|+.|||+|++|+.+.++|.+..
T Consensus 1015 ~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~ 1094 (1490)
T TIGR01271 1015 GAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKAL 1094 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999999887765555555555556666666777777777888999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 266 KEALKQGKKSGVAKGIGVGLTYGLLFCA--WALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGK 343 (782)
Q Consensus 266 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~--~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~ 343 (782)
+...+..........+......++..+. .+++++++.. .++.|.+..++.+.+....++..+...+..+..+.
T Consensus 1095 ~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~ 1169 (1490)
T TIGR01271 1095 NLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLM 1169 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8655544333222222222222211111 1122223322 23444433333344444556777777888899999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCC-------------CCCC--CCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEE
Q 003976 344 AAAANIISIIKENSHSSERPGDD-------------GITL--PKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFA 408 (782)
Q Consensus 344 ~a~~ri~~~l~~~~~~~~~~~~~-------------~~~~--~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~va 408 (782)
.+.+|+.++++.+++..+..+.. ...+ .+..|.|+|+||+|+|++..+++|+|+||+|+|||+||
T Consensus 1170 ~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~Gekva 1249 (1490)
T TIGR01271 1170 RSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVG 1249 (1490)
T ss_pred HHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEE
Confidence 99999999997765531110000 0001 13458899999999998654569999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHH
Q 003976 409 FVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAA 488 (782)
Q Consensus 409 ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~ 488 (782)
|||+||||||||+++|+|+|+ ++|+|+|||+|+++++++++|++|+||||||+||+|||||||.... +++++++++|+
T Consensus 1250 IvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL 1327 (1490)
T TIGR01271 1250 LLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVA 1327 (1490)
T ss_pred EECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHH
Confidence 999999999999999999997 7999999999999999999999999999999999999999998764 47999999999
Q ss_pred HHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEE
Q 003976 489 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIV 568 (782)
Q Consensus 489 ~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~ 568 (782)
+.++++++|.++|+|+||+|||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+
T Consensus 1328 ~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~ 1407 (1490)
T TIGR01271 1328 EEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVIL 1407 (1490)
T ss_pred HHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHHhhhc
Q 003976 569 VAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS 615 (782)
Q Consensus 569 iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~~~~~ 615 (782)
||||++++.+||+|+||++|+|+|.|+|++|+++++.|++|++.+..
T Consensus 1408 IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1408 SEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADR 1454 (1490)
T ss_pred EecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhCh
Confidence 99999999999999999999999999999999989999999976543
No 41
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-79 Score=742.32 Aligned_cols=511 Identities=24% Similarity=0.312 Sum_probs=440.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003976 96 EHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTG 175 (782)
Q Consensus 96 ~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~ 175 (782)
.+...+.+++++..++..++.+.+...+-+.+++|..+++++++|.|++|||. .++|+|+||+++|++.+++.+...+.
T Consensus 859 ~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-TP~GRILNRFSkD~~~vD~~Lp~~~~ 937 (1381)
T KOG0054|consen 859 FYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-TPTGRILNRFSKDIDTVDVLLPFTLE 937 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-CCccchhhhcccchHHHHHhhHHHHH
Confidence 34556667777778888888999999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH
Q 003976 176 HALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 255 (782)
Q Consensus 176 ~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~ 255 (782)
.+++.++.+++.++++.+..|++.++++.+..+++....++.+..+...+-.....+-.-+.+.|+++|+.|||+|+.|+
T Consensus 938 ~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~ 1017 (1381)
T KOG0054|consen 938 FFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEE 1017 (1381)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccH
Confidence 99999999999999999999999999988888888888999888888888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 003976 256 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVR--HGDTNGGKAFTTIINVIFSGFALGQAA 333 (782)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~--~g~~t~G~l~~~~~~~~~~~~~l~~l~ 333 (782)
++.+++.+..+...+...-.....-+..--..++ +.++++..+...+. .+..++|.+-..+.+.+.....+..+.
T Consensus 1018 rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~i---g~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~v 1094 (1381)
T KOG0054|consen 1018 RFIQENDELIDENSRAFFLSISANRWLAVRLELL---GNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLV 1094 (1381)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887776544322222211112222 22222222222222 222567776555566666667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC--CCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeC
Q 003976 334 PNLAAIAKGKAAAANIISIIKENSHSSERPGDDG--ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVG 411 (782)
Q Consensus 334 ~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~--~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG 411 (782)
.....+.....|.+|+.+..+.++|. +...+.. .+.-+.+|+|+|+|++.+|..+-+.||+||||+|+|||+|||||
T Consensus 1095 R~~~elEn~m~SVERv~eY~~~~~E~-p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVG 1173 (1381)
T KOG0054|consen 1095 RQSSELENNMVSVERVLEYTDIPSEA-PLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVG 1173 (1381)
T ss_pred HHHHHHHhcchhhhHHHHHhcCCCCC-CCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeC
Confidence 88889999999999999999876651 1111111 11234679999999999997655569999999999999999999
Q ss_pred CCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHh
Q 003976 412 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAA 491 (782)
Q Consensus 412 ~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a 491 (782)
++|||||||+++|.|+.+|.+|+|.|||+||.++++++||++++++||||.||+||+|.|+.... +.+|+++|+|++.|
T Consensus 1174 RTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~ 1252 (1381)
T KOG0054|consen 1174 RTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERC 1252 (1381)
T ss_pred CCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998765 48999999999999
Q ss_pred hhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEec
Q 003976 492 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 571 (782)
Q Consensus 492 ~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaH 571 (782)
++.++|+++|+|+|+.|.|+|.|+|-||||.+||||||+|+++||+|||||+++|++|...||++|++..+++|+|.|||
T Consensus 1253 ~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAH 1332 (1381)
T KOG0054|consen 1253 QLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAH 1332 (1381)
T ss_pred ChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhcCEEEEEeCCEEEEecChhHHhhc-CchhHHHHHh
Q 003976 572 RLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNL 612 (782)
Q Consensus 572 rl~~i~~aD~I~vl~~G~ive~G~~~eL~~~-~~~y~~l~~~ 612 (782)
|++|+.++|||+|||+|+|+|.|+|++|+++ ++.|++++..
T Consensus 1333 Rl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1333 RLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred ccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 9999999999999999999999999999977 6677666543
No 42
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=9.1e-76 Score=634.93 Aligned_cols=537 Identities=24% Similarity=0.302 Sum_probs=464.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 50 VLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTAR 129 (782)
Q Consensus 50 ~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 129 (782)
.++.++++.+++ .++....|+++=++-|.+.+.. + ...+....++.+++.++..++.+++.....++++++..+
T Consensus 24 a~~~v~lfS~~I-NiL~L~~~lyMLQVyDRVL~S~-s----~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~ 97 (580)
T COG4618 24 AFIGVGLFSAVI-NLLALTGPLYMLQVYDRVLPSR-S----VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQ 97 (580)
T ss_pred HHHHHHHHHHHH-HHHHHhhhHHHHHHHhhhccCC-C----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 4555556666677888876532 1 122333444445555667788899999999999999999
Q ss_pred HHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 130 LRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLI 209 (782)
Q Consensus 130 lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~ 209 (782)
+..++|....+.+..-- ..|+=.. .-+|.++++.+++..-+..+.+..-+-+.++++|.++++++++.++...++
T Consensus 98 L~~~v~~a~~~~~l~~~----~~g~~~Q-~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iL 172 (580)
T COG4618 98 LNGPVFAASFSAPLLRR----GSGDGLQ-PLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIIL 172 (580)
T ss_pred hccHHHHHHHhhHHhhc----CCCcccc-chhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987776532 2332222 336999999999886666666666666677889999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 210 AVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGL 289 (782)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 289 (782)
+.+..+..+..++-.++..+...+.+..++-+..|.++|+++|+.....++|.+.+.++.+...+.+-..+...+++..+
T Consensus 173 v~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~ 252 (580)
T COG4618 173 VVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRAL 252 (580)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88888888888888889999999999999999999999999999999999999999999999888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 003976 290 LFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGIT 369 (782)
Q Consensus 290 ~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~ 369 (782)
-......++..|+|++.+|++|.|.+++.-..+--...|+-.+...|.++..++.|.+|+.+++...|.. ....+
T Consensus 253 Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~-----~~~m~ 327 (580)
T COG4618 253 RMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA-----AERMP 327 (580)
T ss_pred HHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-----cCCCC
Confidence 8888999999999999999999999887544444445688899999999999999999999999887654 12345
Q ss_pred CCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH
Q 003976 370 LPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW 449 (782)
Q Consensus 370 ~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~ 449 (782)
.++.+|.+.++++++.=|+..+++|+|+||++++|+-+|||||||||||||.++|.|.++|.+|.|++||-|++.++.+.
T Consensus 328 LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~ 407 (580)
T COG4618 328 LPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ 407 (580)
T ss_pred CCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH
Confidence 56678999999999988877667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 450 LREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
+-++|||.|||..||+|||+|||+=..++++.+.|.+|++.|+.||.|.+||+||||.|||+|..|||||||||+||||+
T Consensus 408 lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 408 LGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred hccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999877778899999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|.||.+++||||-|+||.+.|+.+.++|.+.+ +|.|+|+||||.+.+..+|+|+||++|++-..|+.+|.+++
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999999998875 68999999999999999999999999999999999999874
No 43
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.9e-74 Score=672.92 Aligned_cols=525 Identities=18% Similarity=0.184 Sum_probs=408.5
Q ss_pred hcChhhHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 43 AADKIDCVLMFLGSLGAFIHGATLPV-FFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQ 121 (782)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~ 121 (782)
|.+++++ .++++++++++.+++... .+++.++++|.... +. ..+. .++++.++..++.+++.++...
T Consensus 7 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~---~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~ 74 (547)
T PRK10522 7 VWRQYRW-PFISVMALSLASAALGIGLIAFINQRLIETADT---SL----LVLP----EFLGLLLLLMAVTLGSQLALTT 74 (547)
T ss_pred HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cc----hHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 344555555555555544 35666788886421 11 1111 1112222334566778888889
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 122 TGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLL 201 (782)
Q Consensus 122 ~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~lv 201 (782)
.+.++..++|.++|+|++++|++||++ .++|++++|+++|++.++..+. .++.++.+++.++++++++++++|.++++
T Consensus 75 ~~~~~~~~lR~~l~~~ll~~~~~~~~~-~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li 152 (547)
T PRK10522 75 LGHHFVYRLRSEFIKRILDTHVERIEQ-LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLV 152 (547)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhc-cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999998 5999999999999999998765 47788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 202 TLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGE---AKAIESYSHSLKEALKQGKKSGVA 278 (782)
Q Consensus 202 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e---~~~~~~~~~~~~~~~~~~~k~~~~ 278 (782)
+++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.++|++..++..+...+....
T Consensus 153 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (547)
T PRK10522 153 TAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTF 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Confidence 999999998888899999999999999999999999999999999995 5544 456788888888877766665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 003976 279 KGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSH 358 (782)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~ 358 (782)
......+...+.....++.+++++... .+ +.+.+..+.++......|+..+...+..+++++.+++|+.++++.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~ 308 (547)
T PRK10522 232 HLSAVNWSNIMMLGAIGLVFYMANSLG-WA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYK 308 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 443333332222223333344443321 12 333333333333344568889999999999999999999998765432
Q ss_pred CCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEEC
Q 003976 359 SSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLD 438 (782)
Q Consensus 359 ~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~ 438 (782)
. +. +.....+ ..+.|+++||+|+||++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 309 ~-~~--~~~~~~~-~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 383 (547)
T PRK10522 309 A-EF--PRPQAFP-DWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD 383 (547)
T ss_pred c-cc--ccccccC-cCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 2 11 1111111 13579999999999853 359999999999999999999999999999999999999999999999
Q ss_pred CeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHH
Q 003976 439 GHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 518 (782)
Q Consensus 439 g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgG 518 (782)
|+|+++++.+++|++|+||+|||++|++|++|| + ++.++++++++++.+++.+++. +|+|. .+|.+||||
T Consensus 384 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LSgG 453 (547)
T PRK10522 384 GKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLSKG 453 (547)
T ss_pred CEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCCHH
Confidence 999999999999999999999999999999999 3 4567888888888777766664 24442 248899999
Q ss_pred HHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhhcCEEEEEeCCEEEEe-cC
Q 003976 519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES-GT 595 (782)
Q Consensus 519 QkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~-G~ 595 (782)
|||||+||||++++|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |+
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~ 533 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGE 533 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCC
Confidence 9999999999999999999999999999999999999997654 48999999999999999999999999999987 55
Q ss_pred hhHHh
Q 003976 596 HVDLI 600 (782)
Q Consensus 596 ~~eL~ 600 (782)
+.+-.
T Consensus 534 ~~~~~ 538 (547)
T PRK10522 534 ERDAA 538 (547)
T ss_pred chhhh
Confidence 55443
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.7e-72 Score=712.84 Aligned_cols=523 Identities=22% Similarity=0.274 Sum_probs=422.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 60 FIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVL 139 (782)
Q Consensus 60 ~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll 139 (782)
++..++....|++++.+++.+.... .. . ......+++.++++.++..++.....+.....+.++...+...+|+|++
T Consensus 90 ~~~~~~~~~~P~ll~~li~~~~~~~-~~-~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L 166 (1490)
T TIGR01271 90 YFGEATKAVQPLLLGRIIASYDPFN-AP-E-REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTL 166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-CC-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555667888888763211 11 0 0111112222333333444444445556666788888888888899999
Q ss_pred cCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 140 KKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTIT 219 (782)
Q Consensus 140 ~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~~~~~~~~~~ 219 (782)
+++...+++ .++|++++++++|++.+.+++.. +..+....+.+++++++++...++.+++.++++++++.+..++.++
T Consensus 167 ~l~~~~~~~-~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~ 244 (1490)
T TIGR01271 167 KLSSRVLDK-ISTGQLVSLLSNNLNKFDEGLAL-AHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQK 244 (1490)
T ss_pred hCCHHHhcC-CCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 58999999999999999998754 3444455566777777777777778888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 220 MSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLW 299 (782)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~ 299 (782)
+.+..++.++..++..+.+.|.++||++||+|++|+.+.+++.+..++..+...+..........+..+ ....+.++.
T Consensus 245 ~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 322 (1490)
T TIGR01271 245 MMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFF--SGFFVVFLS 322 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888888777776665443332222 223344556
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcCcEE
Q 003976 300 YAGILVRHGDTNGGKAFTTIINVIFSGFALG-QAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIE 378 (782)
Q Consensus 300 ~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~-~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~g~i~ 378 (782)
++++.+..+ ++++.+|+++.++.....++. .++..+..+.++.++++||.++++.++.. ... . ......|+
T Consensus 323 f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~--~~~---~--~~~~~~i~ 394 (1490)
T TIGR01271 323 VVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYK--TLE---Y--NLTTTEVE 394 (1490)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--ccc---c--cCCCCceE
Confidence 677776655 688998887766666666764 67788899999999999999999765322 110 0 01123599
Q ss_pred EEeEEEEcCCC--------------------------------CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHc
Q 003976 379 FSEVCFAYPSR--------------------------------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 379 ~~~v~f~y~~~--------------------------------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
++|++|+|+.. ..++|+|+||+|++|++++|+||+|||||||+++|+|
T Consensus 395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999999631 1248999999999999999999999999999999999
Q ss_pred CCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccc
Q 003976 427 LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 506 (782)
Q Consensus 427 ~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t 506 (782)
+++|++|+|.++| +|+||+|+||+|++||+|||.||.+ .+++++.++++.|++.+++..+|+|++|
T Consensus 475 ~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t 540 (1490)
T TIGR01271 475 ELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKT 540 (1490)
T ss_pred CCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccc
Confidence 9999999999999 4999999999999999999999975 5667788899999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHH-HHHHHhCCCeEEEEecCcchhhhcCEEEEE
Q 003976 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR-ALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 585 (782)
Q Consensus 507 ~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~-~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl 585 (782)
.||++|.+|||||||||+||||++++|+||||||||||||+++++.+.+ ++++..+++|+|+|||+++.++.||+|++|
T Consensus 541 ~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l 620 (1490)
T TIGR01271 541 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLL 620 (1490)
T ss_pred cccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999988886 577777899999999999999999999999
Q ss_pred eCCEEEEecChhHHhhcCchhHHHHH
Q 003976 586 KNGQVVESGTHVDLISKGGEYAALVN 611 (782)
Q Consensus 586 ~~G~ive~G~~~eL~~~~~~y~~l~~ 611 (782)
++|+|++.|+|+++.+.++.|.+.+.
T Consensus 621 ~~g~i~~~g~~~~l~~~~~~~~~~~~ 646 (1490)
T TIGR01271 621 HEGVCYFYGTFSELQAKRPDFSSLLL 646 (1490)
T ss_pred ECCEEEEEcCHHHHHhcChHHHHHHh
Confidence 99999999999999987777777663
No 45
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=8.2e-72 Score=708.89 Aligned_cols=696 Identities=15% Similarity=0.151 Sum_probs=493.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 52 MFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLR 131 (782)
Q Consensus 52 ~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR 131 (782)
+++++++.++..++....|++++.+++.+... +. . ......+++.++++.++..++.....+...+.+.++...|+
T Consensus 246 ~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~--~~-~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~ 321 (1560)
T PTZ00243 246 VWWQIPFKLLSDVCTLTLPVLLKYFVKFLDAD--NA-T-WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALN 321 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555666666666788888865321 11 1 11111122222333334445555555666778888888999
Q ss_pred HHHHHHHHcCChhhhhc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 132 LKYLQSVLKKDMSFFDT-EARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIA 210 (782)
Q Consensus 132 ~~~~~~ll~~~~~~fd~-~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~ 210 (782)
..+|+|+++++...+.. +.++|++++.+++|++.+++++. .+..++...+.+++++++++....+.+++.++++++++
T Consensus 322 ~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~ 400 (1560)
T PTZ00243 322 ALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTL 400 (1560)
T ss_pred HHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999987752 13789999999999999999984 45666777777888888888777778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 211 VAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLL 290 (782)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 290 (782)
.+..++.+++.+..++.++..++..+.+.|.++|||+||.+++|+.+.+++.+..++..+...+......+...+.....
T Consensus 401 pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p 480 (1560)
T PTZ00243 401 PLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATP 480 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999988888887777666665444443333
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC----CCCC--
Q 003976 291 FCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSS----ERPG-- 364 (782)
Q Consensus 291 ~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~----~~~~-- 364 (782)
.+..++ .++++.+..+.+|++.+++++..+.....|+..++..+..+.++.++++||.++++.++... +..+
T Consensus 481 ~l~~~~--~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~ 558 (1560)
T PTZ00243 481 TLMIAV--VFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYW 558 (1560)
T ss_pred HHHHHH--HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhc
Confidence 333333 45678888899999999999888888888999999999999999999999999997653100 0000
Q ss_pred -------C--C--------------CCC---------------------------CCCCcCcEEEEeEEEEcCC------
Q 003976 365 -------D--D--------------GIT---------------------------LPKLAGQIEFSEVCFAYPS------ 388 (782)
Q Consensus 365 -------~--~--------------~~~---------------------------~~~~~g~i~~~~v~f~y~~------ 388 (782)
. . +.+ .....+.+.++|++|++|.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1560)
T PTZ00243 559 REQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHI 638 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccc
Confidence 0 0 000 0001235788888887542
Q ss_pred --------------------------------CCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEE
Q 003976 389 --------------------------------RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436 (782)
Q Consensus 389 --------------------------------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~ 436 (782)
.++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~ 718 (1560)
T PTZ00243 639 VEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW 718 (1560)
T ss_pred ccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 122389999999999999999999999999999999999999999998
Q ss_pred ECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCC
Q 003976 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS 516 (782)
Q Consensus 437 i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LS 516 (782)
+++ +||||+|+|++|++||+|||.++.+ .+++++.++++.|+++++++.+|+|++|.+|++|.+||
T Consensus 719 ~~~-------------~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LS 784 (1560)
T PTZ00243 719 AER-------------SIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLS 784 (1560)
T ss_pred ECC-------------eEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCC
Confidence 753 6999999999999999999999875 46677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHH-HHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecC
Q 003976 517 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ-RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595 (782)
Q Consensus 517 gGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~-~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~ 595 (782)
|||||||+||||++++|+|||||||||+||+++++.+. +++....+|+|+|+|||+++.++.||+|++|++|+|+++|+
T Consensus 785 GGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~ 864 (1560)
T PTZ00243 785 GGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGS 864 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999766665 55655667999999999999999999999999999999999
Q ss_pred hhHHhhcCchhHHHHHhhhcccCC-CCCCc-c-cCCCCCCC---CCCCCCCCcCc--cch---h--hhhhhhhhccCCCC
Q 003976 596 HVDLISKGGEYAALVNLQSSEHLS-NPSSI-C-YSGSSRYS---SFRDFPSSRRY--DVE---F--ESSKRRELQSSDQS 662 (782)
Q Consensus 596 ~~eL~~~~~~y~~l~~~~~~~~~~-~~~~~-~-~~~~~~~~---~~~~~~~~~~~--~~~---~--~~~~~~~~~~~~~~ 662 (782)
|+|+++. +.|.++.......... ..... . ......+. ........... ... . .........+....
T Consensus 865 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~ 943 (1560)
T PTZ00243 865 SADFMRT-SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKAS 943 (1560)
T ss_pred HHHHHhC-hHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhHHHHhc
Confidence 9999874 4677776542211110 00000 0 00000000 00000000000 000 0 00000000000011
Q ss_pred CCCCc-cHHHHHHHcccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhhhhHhHHHHHHHHHHHHHHHHH
Q 003976 663 FAPSP-SIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVY 741 (782)
Q Consensus 663 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 741 (782)
...++ .++++++.. +.+.++++.++..++..++.-... .|++.|... ........|.++|++++++.+++.
T Consensus 944 g~v~~~~y~~Y~~~~-g~~~~~~~~l~~~~~~~~~~~~~~----~wl~~w~~~---~~~~~~~~~l~~y~~~~~~~~~~~ 1015 (1560)
T PTZ00243 944 GSVPWSTYVAYLRFC-GGLHAAGFVLATFAVTELVTVSSG----VWLSMWSTR---SFKLSAATYLYVYLGIVLLGTFSV 1015 (1560)
T ss_pred CcccHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccc---ccCCCcccHHHHHHHHHHHHHHHH
Confidence 11111 222222211 111111111111111111111111 222222211 112334578888999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Q 003976 742 LLQHYFYTLMGEHLTARVRLSMFSGSFIFSFQFYIL 777 (782)
Q Consensus 742 ~~~~~~~~~~~~~~~~~lr~~~f~~il~~~~~fFd~ 777 (782)
+++.+.....+.+.++++|+.+|++++++|++|||.
T Consensus 1016 ~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~ 1051 (1560)
T PTZ00243 1016 PLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT 1051 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC
Confidence 888888888889999999999999999999999954
No 46
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.2e-70 Score=650.98 Aligned_cols=532 Identities=17% Similarity=0.133 Sum_probs=444.8
Q ss_pred hHHHHHhhcChhhH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 003976 36 SFLSLFAAADKIDC----VLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVS 111 (782)
Q Consensus 36 ~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~ 111 (782)
.++++++++.|+.+ .++++.+++.++..++....|++.+.++|.+... +...+...+..++++++++.++..+.
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~--~~~~f~~~l~~~~l~~~~~~~~~~~~ 155 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR--SPRNFAWILFKWFLIAPPASFINSAI 155 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888876643 3566777777788888888999999999987532 22223322334444455555666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 112 AWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVG 191 (782)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~ 191 (782)
.++..++......++..++|.++|++....++.+||+ ++|++.+|+++|++.+.+.+...+..++..++.+++.++++
T Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L 233 (659)
T TIGR00954 156 KYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKL 233 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888999999999999999999999999985 68999999999999999999999999999999999888888
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Q 003976 192 FT-SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALK 270 (782)
Q Consensus 192 ~~-~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~ 270 (782)
+. .+|.+++++++.+|+.+++.+++.+++.+...+.++..++..+..+|.++|+++||+|+.|+.+.++|.+..++..+
T Consensus 234 ~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~ 313 (659)
T TIGR00954 234 LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVE 313 (659)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 86 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----CCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 003976 271 QGKKSGVAKGIGVGLTYGLLFC--AWALLLWYAGILVR-H----GDTNGGKAFTTIIN----VIFSGFALGQAAPNLAAI 339 (782)
Q Consensus 271 ~~~k~~~~~~~~~~~~~~~~~~--~~~~~l~~G~~lv~-~----g~~t~G~l~~~~~~----~~~~~~~l~~l~~~~~~~ 339 (782)
...+...+.+....+..++... ..++.++.|...+. + |.+|.|.+++.+.. +.....|+..+...+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 314 HLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877777776542 33333334443332 2 78999987663332 334466888999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCC-----C--C-CCC-------------CCCCCCcCcEEEEeEEEEcCCCCCcccccce
Q 003976 340 AKGKAAAANIISIIKENSHSSER-----P--G-DDG-------------ITLPKLAGQIEFSEVCFAYPSRPHMVFENLN 398 (782)
Q Consensus 340 ~~a~~a~~ri~~~l~~~~~~~~~-----~--~-~~~-------------~~~~~~~g~i~~~~v~f~y~~~~~~vL~~is 398 (782)
+++.++.+|++++++.+++..+. . + .+. .......+.|+++||+|+||++ .++|+|+|
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~is 472 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLS 472 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-Ceeeecce
Confidence 99999999999999865432100 0 0 000 0011234579999999999743 35999999
Q ss_pred EEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCC--
Q 003976 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-- 476 (782)
Q Consensus 399 l~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~-- 476 (782)
|+|++||+++|+||||||||||+++|+|+|+|++|+|.+++ |++|+||+|+|++|++|++|||.++.
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 541 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSS 541 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence 99999999999999999999999999999999999999875 56899999999999999999999974
Q ss_pred -----CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHH
Q 003976 477 -----EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 551 (782)
Q Consensus 477 -----~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~ 551 (782)
++.++++++++++.+++++++.. |.||||..+ .+.+||||||||++||||++++|+++|||||||+||+++++
T Consensus 542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 542 EDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred hhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 34578899999999999999988 999999987 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeC
Q 003976 552 IVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 587 (782)
Q Consensus 552 ~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~ 587 (782)
.+.+.+++. ++|+|+||||+++++.||+|++|+.
T Consensus 620 ~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 620 YMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999873 8999999999999999999999973
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.4e-54 Score=461.38 Aligned_cols=237 Identities=27% Similarity=0.478 Sum_probs=223.2
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
|+|+|+||+++|+....++|+|+||+|++||+++|+||||||||||+++|.|+++ ++|+|.+||.++..++..++|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997543459999999999999999999999999999999999998 789999999999999999999999
Q ss_pred eEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc
Q 003976 455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534 (782)
Q Consensus 455 ~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ 534 (782)
+||||+|.+|++|+++|+.+..+ .++++++++++.+++.+++.++|+|++|.++|+|.+||||||||++||||++++|+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999974433 57889999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHHhh
Q 003976 535 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613 (782)
Q Consensus 535 illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~~~ 613 (782)
||||||||++||+.+++.+++.|++..+++|+|+||||+++++.||+|++|++|+|++.|++++|++.++.|++++...
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 9999999999999999999999998878999999999999999999999999999999999999999888888887544
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-52 Score=411.12 Aligned_cols=215 Identities=32% Similarity=0.537 Sum_probs=188.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC-CcCHHHHHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK-SLQLKWLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~-~~~~~~lR~~i 454 (782)
-|+++||+.+|.+ ..||+||||+|++||.++|+||||||||||+++|.++-+|++|+|.+||.++. +.+...+|+++
T Consensus 2 mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 3899999999974 34999999999999999999999999999999999999999999999998773 34899999999
Q ss_pred eEEeccCCCcc-ccHHHHHhcCCC---CCCHHH----HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 455 GLVSQEPALFA-TSIANNILLGKE---DASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 455 ~~V~Q~~~lf~-~Ti~eNi~~g~~---~~~~~~----i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
|+|+|+..||+ -|+.||+.++.- ..+.+| -.+.+++.++.|-.... ..+||||||||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----------P~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAY-----------PAQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhC-----------ccccCcHHHHHHHHH
Confidence 99999999997 499999999842 123333 23344455555555444 468999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
|||.-+|+++|+|||||||||+....|.+.++++. .|.|.|+|||.+...++ ||||+.||+|+|+|+|+++++..+.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 99999999999999999999999999999999886 58999999999999987 7999999999999999999998763
No 49
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-51 Score=444.81 Aligned_cols=223 Identities=30% Similarity=0.505 Sum_probs=198.1
Q ss_pred CcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCC--Cc
Q 003976 373 LAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLK--SL 445 (782)
Q Consensus 373 ~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~--~~ 445 (782)
..+.|+++|++|+|++...++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+|+. +.
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 346799999999997544459999999999999999999999999999999999997 57999999999997 45
Q ss_pred CHHHHHhHceEEeccCCCccccHHHHHhcCCC--CCCHHH-----HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHH
Q 003976 446 QLKWLREQMGLVSQEPALFATSIANNILLGKE--DASMDR-----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 518 (782)
Q Consensus 446 ~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~--~~~~~~-----i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgG 518 (782)
+...+|+.++||||+|++|++|++|||.|+.. ..++++ +.++++.++ |++++++.++++|.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCCHH
Confidence 56788999999999999999999999998743 133333 344455544 3455678899999999999
Q ss_pred HHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChh
Q 003976 519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHV 597 (782)
Q Consensus 519 QkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~ 597 (782)
||||++||||++++|+|||||||||+||+++.+.++++|+++.+++|+|+|||+++++.. ||+|+||++|+|+|.|+++
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999999889999999999999987 9999999999999999999
Q ss_pred HHhhc
Q 003976 598 DLISK 602 (782)
Q Consensus 598 eL~~~ 602 (782)
++...
T Consensus 310 ~l~~~ 314 (329)
T PRK14257 310 TIFIH 314 (329)
T ss_pred HHhcC
Confidence 99865
No 50
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-51 Score=423.12 Aligned_cols=220 Identities=35% Similarity=0.570 Sum_probs=188.1
Q ss_pred EEEEeEEEEcCCCC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC---HHHH
Q 003976 377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKWL 450 (782)
Q Consensus 377 i~~~~v~f~y~~~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~---~~~l 450 (782)
|+++||++.|+... ..+|+|+||+|++||+.+|||+||+|||||++++.++-.|++|+|.+||+|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 89999999998631 23999999999999999999999999999999999999999999999999988887 5566
Q ss_pred HhHceEEeccCCCcc-ccHHHHHhcCCCCC--CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 451 REQMGLVSQEPALFA-TSIANNILLGKEDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 451 R~~i~~V~Q~~~lf~-~Ti~eNi~~g~~~~--~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
|++||+++|++.|++ .|+.+|++|..+-+ +.+++ ..+.+.+.+++ |+.-.-+....+||||||||++|||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei--~~RV~elLelV-----gL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI--KQRVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHH--HHHHHHHHHHc-----CChhhhccCchhcCcchhhHHHHHH
Confidence 899999999999998 69999999975422 23332 22223333333 3333344556899999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
||..+|+|||.|||||||||+|.+.|.+.|+++. -|-|+++|||.++.+++ |||+.||++|+|+|+|+-.|+..+.
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 9999999999999999999999999999998774 48999999999999987 9999999999999999999998763
No 51
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.1e-50 Score=419.60 Aligned_cols=235 Identities=50% Similarity=0.834 Sum_probs=219.7
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+++|+.+..++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+..++|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997533459999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceE
Q 003976 457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 536 (782)
Q Consensus 457 V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~il 536 (782)
++|++.+|+.|++||+.++.+..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999999976545567778888888999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHH
Q 003976 537 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVN 611 (782)
Q Consensus 537 lLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~ 611 (782)
||||||++||+.++..+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++++..+.|+.++.
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence 999999999999999999999998778999999999999988999999999999999999999988888988764
No 52
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-51 Score=398.40 Aligned_cols=219 Identities=30% Similarity=0.492 Sum_probs=199.0
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCc-----cEEEECCeeCCC--cCH
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS-----GKILLDGHDLKS--LQL 447 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~-----G~I~i~g~di~~--~~~ 447 (782)
..++++|+++.|.+ ..+|+|||++|++++.+|++|||||||||+++.+.|+.+..+ |+|.++|+||.+ +|.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 35899999999974 349999999999999999999999999999999999999886 999999999976 579
Q ss_pred HHHHhHceEEeccCCCccccHHHHHhcCCCC------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 448 KWLREQMGLVSQEPALFATSIANNILLGKED------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 448 ~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
-.||++||+|+|.|.-|..||+||++||..- .-+|.++++++.|+++|-+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 9999999999999999999999999999421 124568899999999998842 345678899999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|+||||||.-+|+|||||||||||||.+...|.+.|.++.++-|+|+|||.++.... +|+...+-.|+++|.|+-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999999999999999988654 7999999999999999999887
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
.+
T Consensus 237 ~~ 238 (253)
T COG1117 237 TN 238 (253)
T ss_pred cC
Confidence 54
No 53
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-50 Score=402.18 Aligned_cols=213 Identities=33% Similarity=0.593 Sum_probs=190.3
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+|+|||++|.+ ..+++|+||+|++||+++++|||||||||++++|.|+++|++|+|++||.|+++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 349999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCcc-ccHHHHHhcCCC--CCCHH----HHHHHHHHhhhH--hHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 457 VSQEPALFA-TSIANNILLGKE--DASMD----RVIEAAKAANAH--SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 457 V~Q~~~lf~-~Ti~eNi~~g~~--~~~~~----~i~~a~~~a~~~--~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
|-|..-||. -||.|||++-.. ..+.+ ++.+.++..+++ +|..+.| ..|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 999999996 599999998632 23333 445555566654 3554444 689999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcch-hhhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLST-VRDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~-i~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||..+|+|+|+|||+|||||.+++.+|+-+.++.+ ++|+|+|||+++. ++-||||.||++|+|++.|+++|++++
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 99999999999999999999999999999987754 8999999999987 577999999999999999999999987
No 54
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.3e-49 Score=414.75 Aligned_cols=240 Identities=34% Similarity=0.582 Sum_probs=221.4
Q ss_pred CCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHH
Q 003976 372 KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 451 (782)
Q Consensus 372 ~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR 451 (782)
...|.|+++|++++|+.....+|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|
T Consensus 15 ~~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 15 GLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred cCCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 35678999999999975333599999999999999999999999999999999999999999999999999999988999
Q ss_pred hHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 452 EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 452 ~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
+.|+||+|+|.+|++|++||+.+... ...+++.++.+.+++.+++..+|.|++|.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999976532 34567888888899999999999999999999999999999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhc-CchhHHHH
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALV 610 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~-~~~y~~l~ 610 (782)
+|++|||||||++||++++..+.+.|+++.+++|+|++||+++.+..||+|++|++|+|++.|+++++.+. ++.|++++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999988779999999999999999999999999999999999999876 46677776
Q ss_pred Hh
Q 003976 611 NL 612 (782)
Q Consensus 611 ~~ 612 (782)
..
T Consensus 254 ~~ 255 (257)
T cd03288 254 RT 255 (257)
T ss_pred hc
Confidence 43
No 55
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-48 Score=407.06 Aligned_cols=233 Identities=55% Similarity=0.904 Sum_probs=217.0
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++..++|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+|+.|+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999997543359999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceE
Q 003976 457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 536 (782)
Q Consensus 457 V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~il 536 (782)
++|++.+|+.|++||+.++.+..+.+++.+.++..++.+++..+|.|+++..+....+||||||||++||||++++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999987655667788888888999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHH
Q 003976 537 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAAL 609 (782)
Q Consensus 537 lLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l 609 (782)
||||||++||+.++..+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++....+.|+.+
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 9999999999999999999999988899999999999999999999999999999999999998877666543
No 56
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-48 Score=405.52 Aligned_cols=234 Identities=53% Similarity=0.847 Sum_probs=218.0
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|++. ..+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999642 249999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceE
Q 003976 457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 536 (782)
Q Consensus 457 V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~il 536 (782)
++|++.+|+.|++||+.++.++.+++++.++++.+++.+.+..+|.|++|.+..+..+||||||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999987656677788888888999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHH
Q 003976 537 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVN 611 (782)
Q Consensus 537 lLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~ 611 (782)
||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++......|++++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~ 234 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWK 234 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHh
Confidence 999999999999999999999988778999999999999999999999999999999999999887777766654
No 57
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-45 Score=386.35 Aligned_cols=474 Identities=20% Similarity=0.233 Sum_probs=369.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 99 LYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHAL 178 (782)
Q Consensus 99 l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i 178 (782)
.++.++.++.++.+.+.......+++....++|.++.++++.-|+..+++ .+++.++.++++|+..|. +-...++.+.
T Consensus 52 ~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~~~~rlla~L~~Dvr~IS-f~~s~lp~~~ 129 (546)
T COG4615 52 PEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-LGSARLLAGLTSDVRNIS-FAFSRLPELV 129 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-hcccchhhhhccccccee-ehHhhhHHHH
Confidence 34444444455666677777888999999999999999999999999998 699999999999999998 4455788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--H
Q 003976 179 RYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA--K 256 (782)
Q Consensus 179 ~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~--~ 256 (782)
++...++++.+.+.|.|+++.++.++.+.+.++...+...+..+.....++..+++.+..+..++|-+..+....-. .
T Consensus 130 qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~ 209 (546)
T COG4615 130 QAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHH
Confidence 99999999999999999999999998888888888888999999999999999999999999999999998764322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 257 AIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNL 336 (782)
Q Consensus 257 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~ 336 (782)
..+.|....++..+.........-....+.+.+.+....+.||....... -+.....++.+.+++...|+.+....+
T Consensus 210 h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w---~st~~a~tivlvlLflr~pL~s~vgil 286 (546)
T COG4615 210 HNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGW---ASTNVAATIVLVLLFLRTPLLSAVGIL 286 (546)
T ss_pred HhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHhhHHHHHHhhh
Confidence 23334333333333222222221122334455555566666766543322 222333444455666677899999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCc
Q 003976 337 AAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSG 416 (782)
Q Consensus 337 ~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsG 416 (782)
+.+.+|.+|+++|.++-..++.. +-..+ ...++. ..|+++||.|+|+... --+..||++|++||.|-|+|.+|||
T Consensus 287 P~l~~AqvA~~kiakle~~~~~a-~~~~~--q~~p~~-~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsG 361 (546)
T COG4615 287 PTLLTAQVAFNKIAKLELAPYKA-DFPRP--QAFPDW-KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSG 361 (546)
T ss_pred hHHHHHHHHHHHHHHhhcCCccc-cCCCC--CcCCcc-cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCc
Confidence 99999999999999875533322 21111 112223 3699999999997532 3688999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCC-CCHHHHHHHHHHhhhHh
Q 003976 417 KSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED-ASMDRVIEAAKAANAHS 495 (782)
Q Consensus 417 KSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~-~~~~~i~~a~~~a~~~~ 495 (782)
|||+++||.|+|.|++|+|++||.++..=+++++|+-++-|+-|-+||+.++ |.++ ++.+.+.+-++.-.+..
T Consensus 362 KST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~ 435 (546)
T COG4615 362 KSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAH 435 (546)
T ss_pred HHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999754 4444 67777766665555444
Q ss_pred HHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHH--hCCCeEEEEecCc
Q 003976 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI--MSNRTTIVVAHRL 573 (782)
Q Consensus 496 ~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~--~~~~T~i~iaHrl 573 (782)
.. ++.+|--+ -..||-|||.|+|+--|++-+-|||+|||=-+-=||.-++.+-+.+--. ..|||++.|||+-
T Consensus 436 kt-sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd 509 (546)
T COG4615 436 KT-SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509 (546)
T ss_pred hh-cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence 33 23333222 2479999999999999999999999999999999999998887776443 3599999999999
Q ss_pred chhhhcCEEEEEeCCEEEEec
Q 003976 574 STVRDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 574 ~~i~~aD~I~vl~~G~ive~G 594 (782)
.+...|||++.|++|+++|.-
T Consensus 510 ~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 510 HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999853
No 58
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-48 Score=403.10 Aligned_cols=228 Identities=50% Similarity=0.874 Sum_probs=213.6
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
|+|+++|++++|+++ ..+|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 468999999999742 2499999999999999999999999999999999999999999999999999988888899999
Q ss_pred eEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc
Q 003976 455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534 (782)
Q Consensus 455 ~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ 534 (782)
+|++|++.+|++|++||+.++.+....+++.++++..++.+++..+|.|+++.++....+||||||||++||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876556678888888899999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 535 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 535 illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
+|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+.+++.+..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 999999999999999999999999987789999999999999999999999999999999998887643
No 59
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.2e-48 Score=399.40 Aligned_cols=220 Identities=40% Similarity=0.653 Sum_probs=207.8
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
|.|+++|++++|+.....+|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 46899999999975433599999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc
Q 003976 455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534 (782)
Q Consensus 455 ~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ 534 (782)
+|++|++.+|+.|++|||.+..+ .+.+++.++++..++.+++.++|.|++|..++.+.+||||||||++||||++++|+
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987653 56788899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecC
Q 003976 535 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595 (782)
Q Consensus 535 illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~ 595 (782)
++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999877899999999999999999999999999999876
No 60
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.2e-47 Score=401.21 Aligned_cols=234 Identities=64% Similarity=0.989 Sum_probs=215.4
Q ss_pred EEEEeEEEEcCCCC-CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 377 IEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 377 i~~~~v~f~y~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
|+++|+++.|+++. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997532 34999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCce
Q 003976 456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 535 (782)
Q Consensus 456 ~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~i 535 (782)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998665556677778888889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHH
Q 003976 536 LLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALV 610 (782)
Q Consensus 536 llLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~ 610 (782)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++......++.++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 999999999999999999999998877899999999999999999999999999999999999987766655554
No 61
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4.2e-47 Score=392.41 Aligned_cols=220 Identities=42% Similarity=0.731 Sum_probs=204.4
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
|+|+++|++++|+++...+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++..++...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999975333599999999999999999999999999999999999999999999999999888888889999
Q ss_pred eEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc
Q 003976 455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534 (782)
Q Consensus 455 ~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ 534 (782)
+|++|++.+|..|++||+.++.+..+.+++.++++..++.+.+..+|.|++|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765445667888899999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEec
Q 003976 535 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 535 illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G 594 (782)
+|||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999987678999999999998889999999999998765
No 62
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-47 Score=407.62 Aligned_cols=212 Identities=36% Similarity=0.591 Sum_probs=193.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+++|.+.. +|+|+||+|++||+++|+|||||||||++++|.|+.+|++|+|.|||.|+.+++++. +.||
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997432 999999999999999999999999999999999999999999999999999999886 6899
Q ss_pred EEeccCCCccc-cHHHHHhcCCCCC------CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~~------~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
+|+|+.-||+- ||+|||+||.... -++++.++++..++.+.+++.| .+||||||||+|||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999975 9999999996422 2667889999999988888776 5799999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|+++|+++|||||+|+||++.+..+..-|+++.+ +.|+|.|||+...+ .-||||+||++|+|.+.|++.|+..+
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9999999999999999999999999999988753 68999999998776 45899999999999999999999876
No 63
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-46 Score=407.87 Aligned_cols=220 Identities=25% Similarity=0.475 Sum_probs=189.1
Q ss_pred cEEEEeEEEEcCCCC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCc-------
Q 003976 376 QIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL------- 445 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~------- 445 (782)
-|+++||+|+|++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 489999999997432 2499999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHHhHceEEeccC--CCccccHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCC
Q 003976 446 ---------QLKWLREQMGLVSQEP--ALFATSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEG 511 (782)
Q Consensus 446 ---------~~~~lR~~i~~V~Q~~--~lf~~Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~ 511 (782)
+...+|++|+||+|+| .+|+.|++|||.++.. ..+.++..+. +.+++..+ |++ ...++.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL-----AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 7999999999999742 2333333221 12344444 453 456778
Q ss_pred CCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchh-hhcCEEEEEeCCE
Q 003976 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTV-RDVDTIMVLKNGQ 589 (782)
Q Consensus 512 G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i-~~aD~I~vl~~G~ 589 (782)
+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999998874 589999999999987 5699999999999
Q ss_pred EEEecChhHHhhc
Q 003976 590 VVESGTHVDLISK 602 (782)
Q Consensus 590 ive~G~~~eL~~~ 602 (782)
|++.|+++++...
T Consensus 254 i~~~g~~~~~~~~ 266 (320)
T PRK13631 254 ILKTGTPYEIFTD 266 (320)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999998764
No 64
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1e-46 Score=412.04 Aligned_cols=224 Identities=33% Similarity=0.514 Sum_probs=190.9
Q ss_pred EEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH---HH
Q 003976 377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---LR 451 (782)
Q Consensus 377 i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~---lR 451 (782)
|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++.+. +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997422 24999999999999999999999999999999999999999999999999999887654 57
Q ss_pred hHceEEeccCCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 452 EQMGLVSQEPALFA-TSIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 452 ~~i~~V~Q~~~lf~-~Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
++||||+|++.+|. .|++||+.++.. ..+. +++.++++..++.++.. ....+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 89999999999996 699999998642 1222 33455566555555443 344689999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.++. ||+|++|++|+|++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998854 7999999999999965 99999999999999999999986
Q ss_pred cC--chhHHHHH
Q 003976 602 KG--GEYAALVN 611 (782)
Q Consensus 602 ~~--~~y~~l~~ 611 (782)
.. ..+++++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 52 33444443
No 65
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-46 Score=393.11 Aligned_cols=217 Identities=33% Similarity=0.539 Sum_probs=184.9
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH---HHHHhH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL---KWLREQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~---~~lR~~ 453 (782)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+. ..+|+.
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 5789999999743 49999999999999999999999999999999999999999999999999988764 578899
Q ss_pred ceEEeccCCCccc-cHHHHHhcCCC---CCCHHH----HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHH
Q 003976 454 MGLVSQEPALFAT-SIANNILLGKE---DASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 454 i~~V~Q~~~lf~~-Ti~eNi~~g~~---~~~~~~----i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiai 525 (782)
|+||+|++.+|.. |++||+.++.. ..+.++ +.++++..++.++ ......+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA-----------EDLYPAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 9999999999986 99999988632 123322 3334444443332 233446899999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|||++++|+||||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999998753 7999999999998865 999999999999999999998765
Q ss_pred Cchh
Q 003976 603 GGEY 606 (782)
Q Consensus 603 ~~~y 606 (782)
...|
T Consensus 228 ~~~~ 231 (235)
T cd03261 228 DDPL 231 (235)
T ss_pred CChh
Confidence 4434
No 66
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-47 Score=389.97 Aligned_cols=215 Identities=35% Similarity=0.643 Sum_probs=195.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC-CcCHHHHHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK-SLQLKWLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~-~~~~~~lR~~i 454 (782)
-|+++|++|+|+++ .++|+|+||+|++|+.++|+|+||||||||+++|.|++.|++|.|.+||.++. +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48899999999876 46999999999999999999999999999999999999999999999999998 58899999999
Q ss_pred eEEeccC--CCccccHHHHHhcCCCC--CCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 455 GLVSQEP--ALFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 455 ~~V~Q~~--~lf~~Ti~eNi~~g~~~--~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
|+|+|+| .+|..||.|.++||.++ .+. +++.++++.++++++..+-| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 89999999999999754 333 34667777777777754444 68999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
.+|..+|++||||||||+||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+++||++|+++.+|+++|+.+.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999999864 4799999999999987 999999999999999999988765
No 67
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=8.3e-47 Score=390.41 Aligned_cols=214 Identities=34% Similarity=0.580 Sum_probs=193.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.++++|++|+|+++ ++|+|+||+|++||+++|+||+|||||||+++|.|+..|.+|+|.+||+|+.+++.+++.+++|
T Consensus 2 ~L~~~~ls~~y~~~--~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECCe--eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 37899999999843 4999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccC-CCccccHHHHHhcCCCC----------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 456 LVSQEP-ALFATSIANNILLGKED----------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 456 ~V~Q~~-~lf~~Ti~eNi~~g~~~----------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
||||++ .-|.-|++|=+.+|+-. .+++.+.+|++..++.++..+ .-..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHH
Confidence 999997 45677999999999631 123357888999999888743 23579999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcch-hhhcCEEEEEeCCEEEEecChhHHhh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLST-VRDVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~-i~~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
|||||+++|+||+||||||+||...+-.+++.++++. +|+|+|+|.|+++. .+.||++++|++|+|+.+|+++|.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999886 47999999999976 57799999999999999999999886
Q ss_pred c
Q 003976 602 K 602 (782)
Q Consensus 602 ~ 602 (782)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 4
No 68
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.9e-46 Score=387.83 Aligned_cols=219 Identities=52% Similarity=0.866 Sum_probs=201.0
Q ss_pred CCcCcEEEEeEEEEcCCCC-CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH
Q 003976 372 KLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 450 (782)
Q Consensus 372 ~~~g~i~~~~v~f~y~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l 450 (782)
...+.|+++|++++|+++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 3457899999999997543 249999999999999999999999999999999999999999999999999988888888
Q ss_pred HhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 451 REQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 451 R~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
|+.++|++|++.+|+.|++||+.++....+.+++.+.++...+++++..+|.|+++.+.+...+||||||||++||||++
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999876544555566666667788999999999999999999999999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEE
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 590 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~i 590 (782)
++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999998778999999999999989999999999975
No 69
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.1e-46 Score=389.05 Aligned_cols=212 Identities=34% Similarity=0.552 Sum_probs=184.0
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCC-----CCCccEEEECCeeCCCcC--HHH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY-----EPTSGKILLDGHDLKSLQ--LKW 449 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~-----~~~~G~I~i~g~di~~~~--~~~ 449 (782)
|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|++ +|++|+|.++|.++.+++ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999753 4999999999999999999999999999999999999 999999999999998877 667
Q ss_pred HHhHceEEeccCCCccccHHHHHhcCCCCC-------CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 450 LREQMGLVSQEPALFATSIANNILLGKEDA-------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~-------~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
+|++++||+|++.+|+.|++||+.++.... .++++.++++..++.+.....++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 889999999999999889999998863211 12345566666665554433221 46899999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL 599 (782)
++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999999998865689999999999876 4999999999999999998764
No 70
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6e-46 Score=376.92 Aligned_cols=206 Identities=35% Similarity=0.537 Sum_probs=173.9
Q ss_pred EEEEeEEEEcCCCCC--cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH---H-
Q 003976 377 IEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---L- 450 (782)
Q Consensus 377 i~~~~v~f~y~~~~~--~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~---l- 450 (782)
++++||+..|..... .+|+++||+|++||+|||+||||||||||+++|.++..|++|.|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 578999999975432 3999999999999999999999999999999999999999999999999999998533 3
Q ss_pred HhHceEEeccCCCccc-cHHHHHhcC----CCCC--CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 451 REQMGLVSQEPALFAT-SIANNILLG----KEDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 451 R~~i~~V~Q~~~lf~~-Ti~eNi~~g----~~~~--~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
|++||||+|+..|++. |++|||.+. .... ..+.+.+.++..++.+... .....+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 5779999999999986 999999953 2111 1233344444444443332 133568999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhhcCEEEEEeCCEEEE
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 592 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive 592 (782)
||||||+.+|+|++.||||++||+++.+.|.+.+++.. .|+|+|+|||+......|||++.|++|++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999884 4789999999999999999999999999543
No 71
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.8e-46 Score=373.08 Aligned_cols=222 Identities=29% Similarity=0.532 Sum_probs=191.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH---HHHh
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLRE 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~---~lR~ 452 (782)
-|++++|+++|.++ .||+|+||+|++||.++|+||||||||||+++|.|+..|++|+|.++|.|+.+++.+ .+|+
T Consensus 8 ~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 59999999999754 499999999999999999999999999999999999999999999999999999864 5699
Q ss_pred HceEEeccCCCccc-cHHHHHhcCCCC---CCHHHHHHH----HHHhhhHhH-HhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 453 QMGLVSQEPALFAT-SIANNILLGKED---ASMDRVIEA----AKAANAHSF-VEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 453 ~i~~V~Q~~~lf~~-Ti~eNi~~g~~~---~~~~~i~~a----~~~a~~~~~-i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
++|+++|..-||+. ||+||+.|-..+ .+++++++. ++.+++... ...+ ...||||++.|.
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----------PsELSGGM~KRv 154 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY-----------PSELSGGMRKRV 154 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----------chhhcchHHHHH
Confidence 99999999999987 999999995422 344544433 344554444 2233 368999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|||||+.-||+|+++|||||+|||.+...+.+.|+++.+ +-|+|+|||+++++.. ||||+++.+|+|+..||++|+.
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999988754 8999999999999876 6999999999999999999999
Q ss_pred hcCchh-HHHH
Q 003976 601 SKGGEY-AALV 610 (782)
Q Consensus 601 ~~~~~y-~~l~ 610 (782)
+.+..| ++++
T Consensus 235 ~sd~P~v~qf~ 245 (263)
T COG1127 235 ASDDPWVRQFF 245 (263)
T ss_pred hCCCHHHHHHh
Confidence 875544 4443
No 72
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.6e-46 Score=356.92 Aligned_cols=211 Identities=33% Similarity=0.564 Sum_probs=190.0
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|.+++|.|+|..-+ =.++++|++||+|||+||||||||||++||.||..|.+|+|.|+|+|.....+. ++-+++
T Consensus 2 l~L~~V~~~y~~~~----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHLP----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcce----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 56889999997543 368899999999999999999999999999999999999999999999887765 457999
Q ss_pred EeccCCCccc-cHHHHHhcCCC-C-----CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALFAT-SIANNILLGKE-D-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~-~-----~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
++||..||.- ||.+||.+|.. . ...++++.++...++.+|..+||. +||||||||+||||++
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999975 99999999963 2 245779999999999999999994 7999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhcCc
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGG 604 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~~~ 604 (782)
+|+-|||+||||+|||||.-++.....+.++. ++.|+++|||.++.++. +|+++++++|||+++|+-+++.+..+
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999999988887764 57899999999998755 89999999999999999999987643
No 73
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-46 Score=404.45 Aligned_cols=214 Identities=32% Similarity=0.561 Sum_probs=192.0
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
..|+++||+.+|. ...+++|+||+|++||+++++|||||||||++++|.||..|++|+|.+||+|+.+++++ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 3699999999997 33499999999999999999999999999999999999999999999999999998876 6789
Q ss_pred eEEeccCCCcc-ccHHHHHhcCCC---CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 455 GLVSQEPALFA-TSIANNILLGKE---DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 455 ~~V~Q~~~lf~-~Ti~eNi~~g~~---~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
|+|+|+.-||+ .||+|||+||.. ... .+++.++++..++.++-.+.| .+|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 99999999996 599999999964 112 246788888888887766554 68999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcch-hhhcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLST-VRDVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~-i~~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
|||..+|++||||||.||||.+-+..++..++++. .|.|.|+|||+-+. +..+|||+||++|+|.+.||++|+....
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999999998774 48999999999876 5779999999999999999999998763
No 74
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=395.43 Aligned_cols=216 Identities=36% Similarity=0.588 Sum_probs=190.9
Q ss_pred cEEEEeEEEEcCCC-CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 376 QIEFSEVCFAYPSR-PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
-|+++||+++|++. ...+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999743 23499999999999999999999999999999999999999999999999999988888899999
Q ss_pred eEEeccCC--CccccHHHHHhcCCCC--CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 455 GLVSQEPA--LFATSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 455 ~~V~Q~~~--lf~~Ti~eNi~~g~~~--~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
+||+|+|. ++..|++|||.++... .+ ++++.++++..++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999983 5677999999987432 22 244566677777766654443 58999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||++++|++|||||||++||+.+++.+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998853 8999999999999988999999999999999999988765
No 75
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-46 Score=378.27 Aligned_cols=198 Identities=37% Similarity=0.580 Sum_probs=175.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.+++++|+.+|++ ..||+|+||+|++||+|+||||||||||||+++|.|+..|++|+|.++|.++..-. ..++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCEE
Confidence 4889999999975 34999999999999999999999999999999999999999999999999885544 3599
Q ss_pred EEeccCCCcc-ccHHHHHhcCCCCC------CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPALFA-TSIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~lf~-~Ti~eNi~~g~~~~------~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
||+|++.||. -|++||+.+|.+.. ..+.+.++++..++.+|-...| .+||||||||+|||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHH
Confidence 9999999998 59999999996532 2345777778888888877666 5899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchh-hhcCEEEEEeC--CEEE
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKN--GQVV 591 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i-~~aD~I~vl~~--G~iv 591 (782)
|+.+|+|||||||++|||+.|+..+|+-+.++. .++|+++|||+++.. .-+|||+||.+ |+|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999999999998875 469999999999874 66999999999 5553
No 76
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-46 Score=389.09 Aligned_cols=218 Identities=29% Similarity=0.482 Sum_probs=190.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC---CCccEEEECCeeCCCcCHHHHHh
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE---PTSGKILLDGHDLKSLQLKWLRE 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~---~~~G~I~i~g~di~~~~~~~lR~ 452 (782)
.|+++||++.|+++ .+|+|+||++++||+++|+||||||||||+++|.|+++ |++|+|.+||+++.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGKK--QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECCE--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 37899999999743 49999999999999999999999999999999999985 69999999999999888888999
Q ss_pred HceEEeccCCCccccHHHHHhcCCC--------CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 453 QMGLVSQEPALFATSIANNILLGKE--------DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 453 ~i~~V~Q~~~lf~~Ti~eNi~~g~~--------~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
.|+|++|++.+|+.|++||+.++.. ...++++.++++..++.+++. +...+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHHH
Confidence 9999999999999999999988631 111234455566656554443 2345567899999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||||++++|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999999877999999999999875 5999999999999999999998754
No 77
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=4.2e-42 Score=388.86 Aligned_cols=471 Identities=17% Similarity=0.143 Sum_probs=361.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHH------HHHHHHHHHHHHHHH
Q 003976 97 HALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNI------IFHISSDAILVQDAI 170 (782)
Q Consensus 97 ~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l------~srl~~D~~~i~~~i 170 (782)
.+..+..++.+..+....+.++...+..+.-.-|-..+.++-+...-.|+.. ..|.+ =.|+..|+...-+..
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhH
Confidence 3344444555555556666677666666666667777788888777555544 33322 269999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 171 GDKTGHALRYLSQFFVGFAVGFTSVW---------------QLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAG 235 (782)
Q Consensus 171 ~~~~~~~i~~~~~~i~~~~~~~~~~w---------------~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (782)
.+....++.++++++.-.+++.-.+. .+..++++.+++.-++..+++|.+.+..-+.++..++.-
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 77667777777666555555542222 223333444555555666788888889989999999999
Q ss_pred HHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 003976 236 KVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKA 315 (782)
Q Consensus 236 ~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l 315 (782)
..+.-.-++.+.|..|++|+.+.++.++......+...+..........+......+..++-+..++-....|.++.|.+
T Consensus 246 ~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~l 325 (604)
T COG4178 246 YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGL 325 (604)
T ss_pred HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHH
Confidence 99999999999999999999999988888777776655554444444444444444455555566777788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCC--CCCCC-C--CCCCcCcEEEEeEEEEcCCC
Q 003976 316 FTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSS-ERP--GDDGI-T--LPKLAGQIEFSEVCFAYPSR 389 (782)
Q Consensus 316 ~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~-~~~--~~~~~-~--~~~~~g~i~~~~v~f~y~~~ 389 (782)
+....++.....+++.+...+..++.=++...|+.++.+.-.... +.. ...+. . ....+..|+++|++..-|+.
T Consensus 326 mqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~ 405 (604)
T COG4178 326 MQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC
Confidence 988777777777889999999999999999999999874321100 110 01000 0 01114679999999999865
Q ss_pred CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHH
Q 003976 390 PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIA 469 (782)
Q Consensus 390 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~ 469 (782)
. ..|+++||++++|+.+-|.||||||||||++.|.|+++--+|+|..-.. +.+-|+||.|++=.||+|
T Consensus 406 ~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLr 473 (604)
T COG4178 406 Q-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLR 473 (604)
T ss_pred C-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHH
Confidence 3 6899999999999999999999999999999999999999999987621 148999999999999999
Q ss_pred HHHhcCCCC--CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCH
Q 003976 470 NNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547 (782)
Q Consensus 470 eNi~~g~~~--~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~ 547 (782)
|-|+|.++. .+++++.+++.+|++.+++.+|.+-. .-..-||+|||||+|+||.++++|++++|||||||||+
T Consensus 474 e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 474 EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 999998754 78999999999999999999975422 24568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEe
Q 003976 548 ESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLK 586 (782)
Q Consensus 548 ~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~ 586 (782)
++|..+.+.+++..++.|+|-|.||.....-.++.+-++
T Consensus 549 ~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 549 ETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 999999999999999999999999998777776655443
No 78
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.4e-45 Score=385.08 Aligned_cols=221 Identities=27% Similarity=0.509 Sum_probs=186.2
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH-HhHce
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQMG 455 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l-R~~i~ 455 (782)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+.+...+ |+.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999974 249999999999999999999999999999999999999999999999999988876554 56799
Q ss_pred EEeccCCCccc-cHHHHHhcCCCCCCHHHH-------HHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGKEDASMDRV-------IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i-------~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
||+|++.+|.+ |++||+.++........+ ........+++.+..+ |++........+||||||||++|||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHH
Confidence 99999999987 999999987432110000 0001111234445444 5666666777899999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
|++.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9999999999999999999999999999998875 68999999999999866 99999999999999999998865
No 79
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.4e-45 Score=373.92 Aligned_cols=203 Identities=36% Similarity=0.625 Sum_probs=183.6
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
+.|+++|++++|+....++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 57999999999975333599999999999999999999999999999999999999999999999999988888899999
Q ss_pred eEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc
Q 003976 455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534 (782)
Q Consensus 455 ~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ 534 (782)
+||+|+|.+|++|++||+.+..+ .+++++.++++ ++.+...|||||+||++||||++++|+
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999987643 34454444432 345678999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecCh
Q 003976 535 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 535 illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~ 596 (782)
++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999988778999999999999988999999999999998863
No 80
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-45 Score=390.74 Aligned_cols=218 Identities=31% Similarity=0.554 Sum_probs=192.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||+++|+..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 38999999999754345999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeccC--CCccccHHHHHhcCCCC--CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 456 LVSQEP--ALFATSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 456 ~V~Q~~--~lf~~Ti~eNi~~g~~~--~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
|++|+| .+++.|++|||.++... .+ .+++.++++..++.+++...| ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 46678999999986321 12 234566667777766665554 489999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCc
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGG 604 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~ 604 (782)
|++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+...
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 99999999999999999999999999999998864 799999999999998999999999999999999999876543
No 81
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.1e-45 Score=356.39 Aligned_cols=208 Identities=34% Similarity=0.586 Sum_probs=188.1
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC---HHHHHhH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKWLREQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~---~~~lR~~ 453 (782)
|+|+||+.+|+.. .++|+|+||+|++||++-++||||+||||+++||++...|+.|+|.++|+|+..+. ...||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999976 45999999999999999999999999999999999999999999999999998886 5578999
Q ss_pred ceEEeccCCCccc-cHHHHHhcCCC------CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 454 MGLVSQEPALFAT-SIANNILLGKE------DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 454 i~~V~Q~~~lf~~-Ti~eNi~~g~~------~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
||+|+||..|... |+.||++|... ..-.+++.++++.+++.+-...||. +|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 9999999988765 99999999642 1124668889999999999999984 7999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhc-CEEEEEeCCEEEEecCh
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTH 596 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~a-D~I~vl~~G~ive~G~~ 596 (782)
||++.+|++||=||||.+|||.....|++.+.++. .|.|+++.||..+.+..+ -|++.+++|+++....+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999998874 599999999999999876 78999999999875443
No 82
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.1e-45 Score=378.71 Aligned_cols=203 Identities=34% Similarity=0.577 Sum_probs=174.9
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH---HHHhH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLREQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~---~lR~~ 453 (782)
|+++||+++|++...++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999974323499999999999999999999999999999999999999999999999999876643 47889
Q ss_pred ceEEeccCCCcc-ccHHHHHhcCCC------CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 454 MGLVSQEPALFA-TSIANNILLGKE------DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 454 i~~V~Q~~~lf~-~Ti~eNi~~g~~------~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
++||+|++.+|. .|++||+.++.. ...++++.++++..++.++....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999987 499999987521 112345666666666655544333 58999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEE
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQV 590 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~i 590 (782)
||++++|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999874 47999999999999875 899999999985
No 83
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-45 Score=385.43 Aligned_cols=218 Identities=29% Similarity=0.448 Sum_probs=187.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--cCHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~--~~~~ 448 (782)
-|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCCc--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 59999999999743 499999999999999999999999999999999999997 48999999999863 3456
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCC---CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKED---AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~---~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|+.|+||+|++.+|+.|++|||.++... .+ ++++.++++..++.+.+ ++.+++ +..+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHHH
Confidence 788999999999999999999999986421 11 23445555555553332 233444 56789999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999755 9999999999999999999997
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
+.
T Consensus 238 ~~ 239 (254)
T PRK14273 238 FN 239 (254)
T ss_pred hC
Confidence 54
No 84
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-45 Score=402.03 Aligned_cols=213 Identities=31% Similarity=0.521 Sum_probs=188.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+++|+++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++.. ++.||
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999422 3499999999999999999999999999999999999999999999999999887764 47899
Q ss_pred EEeccCCCcc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPALFA-TSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~lf~-~Ti~eNi~~g~~~--~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
||+|++.+|. .|++|||.|+... .+ .+++.++++..++.++..+.| .+||||||||+|||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 5999999997531 22 244667777777777665555 5899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||++..+. .||+|++|++|+|++.|+++|+..+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999998754 799999999998774 5999999999999999999999876
No 85
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-45 Score=388.90 Aligned_cols=213 Identities=31% Similarity=0.556 Sum_probs=187.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||+|+|+.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+.+..++|++|+
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999732 24999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EEeccC--CCccccHHHHHhcCCC--CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 456 LVSQEP--ALFATSIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 456 ~V~Q~~--~lf~~Ti~eNi~~g~~--~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
||+|+| .+|..|++||+.++.. ..+ ++++.++++..++.++..+.| .+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 6888999999998742 122 234566666667766655444 489999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999999875 4899999999999984 59999999999999999987643
No 86
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-45 Score=385.86 Aligned_cols=218 Identities=29% Similarity=0.505 Sum_probs=188.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--cCHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~~--~~~~ 448 (782)
.|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.+||+++.. .+..
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECCe--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 49999999999743 49999999999999999999999999999999999975 689999999999875 4556
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCC--CC-----CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKE--DA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~--~~-----~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|+.|+||+|++.+|+.|++||+.++.. .. ..+++.++++.+++.+++. +.......+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHHH
Confidence 78899999999999999999999998631 11 1234555666665544332 2345667899999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999877899999999999985 59999999999999999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
..
T Consensus 237 ~~ 238 (253)
T PRK14242 237 TR 238 (253)
T ss_pred cC
Confidence 54
No 87
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-45 Score=382.31 Aligned_cols=212 Identities=36% Similarity=0.608 Sum_probs=182.2
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC---HHHHHhH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKWLREQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~---~~~lR~~ 453 (782)
|+++||+++|+++ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999741 34999999999999999999999999999999999999999999999999998876 5678899
Q ss_pred ceEEeccCCCcc-ccHHHHHhcCCCCC-----------C---HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHH
Q 003976 454 MGLVSQEPALFA-TSIANNILLGKEDA-----------S---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 518 (782)
Q Consensus 454 i~~V~Q~~~lf~-~Ti~eNi~~g~~~~-----------~---~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgG 518 (782)
++||+|++.+|. .|++||+.++.... + ++++.++++.. |++......+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV-----------GLLDKAYQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc-----------CChhhhCCCcccCCHH
Confidence 999999999887 59999998753210 1 12233333333 3333445567799999
Q ss_pred HHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecC
Q 003976 519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGT 595 (782)
Q Consensus 519 QkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~ 595 (782)
||||++||||++++|+||||||||++||+.++..+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999875 3899999999999987 599999999999999999
Q ss_pred hhHHh
Q 003976 596 HVDLI 600 (782)
Q Consensus 596 ~~eL~ 600 (782)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 99874
No 88
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.9e-45 Score=383.72 Aligned_cols=217 Identities=31% Similarity=0.512 Sum_probs=186.8
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC-----ccEEEECCeeCCCc--CHHH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDLKSL--QLKW 449 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~-----~G~I~i~g~di~~~--~~~~ 449 (782)
|+++||+++|+++ .+|+|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999743 4999999999999999999999999999999999999998 99999999999763 4667
Q ss_pred HHhHceEEeccCCCccccHHHHHhcCCCC---CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 450 LREQMGLVSQEPALFATSIANNILLGKED---AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~---~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
+|++|+||+|++.+|+.|++||+.++... .+ .+++.++++..++.+++. ........+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence 78999999999999999999999875321 11 233455555555543331 23345567899999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
++||||++++|+++||||||++||+.++..+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999999877799999999999885 499999999999999999999875
Q ss_pred c
Q 003976 602 K 602 (782)
Q Consensus 602 ~ 602 (782)
.
T Consensus 233 ~ 233 (247)
T TIGR00972 233 N 233 (247)
T ss_pred C
Confidence 4
No 89
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-45 Score=391.18 Aligned_cols=216 Identities=28% Similarity=0.507 Sum_probs=183.9
Q ss_pred EEEEeEEEEcCCCC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC----cCHHH
Q 003976 377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS----LQLKW 449 (782)
Q Consensus 377 i~~~~v~f~y~~~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~----~~~~~ 449 (782)
|+++||+|+|+... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 249999999999999999999999999999999999999999999999999863 34667
Q ss_pred HHhHceEEeccC--CCccccHHHHHhcCCCC--CCHHH----HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 450 LREQMGLVSQEP--ALFATSIANNILLGKED--ASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 450 lR~~i~~V~Q~~--~lf~~Ti~eNi~~g~~~--~~~~~----i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
+|+.||||+|+| .+|..|+.||+.|+... .+.++ +.++++..++.+ ........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 899999999998 79999999999997532 22333 333333333311 1234556789999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL 599 (782)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998875 4899999999999885 5999999999999999999998
Q ss_pred hhc
Q 003976 600 ISK 602 (782)
Q Consensus 600 ~~~ 602 (782)
...
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 753
No 90
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-45 Score=402.10 Aligned_cols=212 Identities=32% Similarity=0.553 Sum_probs=186.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. +++||
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5999999999964 3499999999999999999999999999999999999999999999999999887653 57899
Q ss_pred EEeccCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~--~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
||+|++.||.. |++|||.|+.. ..+ .+++.++++..++.++..+. ..+||||||||+|||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 99999999743 122 34556666666665554333 46899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|+++|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+ .-||+|+||++|+|++.|+++++..+
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998854 79999999999987 45999999999999999999999875
No 91
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.8e-45 Score=402.84 Aligned_cols=200 Identities=35% Similarity=0.542 Sum_probs=178.0
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH----HhHceEEeccCCCccc-
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL----REQMGLVSQEPALFAT- 466 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l----R~~i~~V~Q~~~lf~~- 466 (782)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.|+.+++..++ |++|+||+|++.||+.
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 39999999999999999999999999999999999999999999999999999999888 7899999999999975
Q ss_pred cHHHHHhcCCCC--CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeC
Q 003976 467 SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 540 (782)
Q Consensus 467 Ti~eNi~~g~~~--~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE 540 (782)
|++|||.++.+. .+ .+++.++++..++.++. .....+||||||||++|||||+++|+||||||
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999987432 12 24455666666655544 44455899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 541 ATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 541 ~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|||+||+.+++.+++.+.++. .++|+|+|||+++.+ +.||+|++|++|+|++.|+++|++++
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999998874 389999999999975 56999999999999999999999875
No 92
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=5e-45 Score=376.91 Aligned_cols=211 Identities=24% Similarity=0.428 Sum_probs=179.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||++.|++...++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.++|.++.... ..+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5789999999753234999999999999999999999999999999999999999999999999987643 667889999
Q ss_pred EeccCCCc-cccHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALF-ATSIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf-~~Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
|+|++.+| ..|++||+.++.. ..+. +++.++++..++.+. ......+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-----------ANKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhChhhhCCHHHHHHHHHHHHH
Confidence 99999999 5699999987531 1122 223344444333322 2333468999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL 599 (782)
+++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999998878999999999999865 999999999999999999875
No 93
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=379.56 Aligned_cols=215 Identities=34% Similarity=0.561 Sum_probs=187.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++|++|+|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.++
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGK--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 48999999999743 4999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEeccCCCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 456 LVSQEPALFATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 456 ~V~Q~~~lf~~Ti~eNi~~g~~~--~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
|++|++.+|+.|++||+.++... ...+++.+.++..++.+ ........+||||||||++||||++++|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999986421 11233444444433321 1223456789999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999875 38999999999999865 999999999999999999999864
No 94
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-45 Score=367.84 Aligned_cols=224 Identities=32% Similarity=0.496 Sum_probs=185.8
Q ss_pred cEEEEeEEEEcCCCCC--cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC-HHHHHh
Q 003976 376 QIEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWLRE 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~--~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~-~~~lR~ 452 (782)
-++++|+++.|+.+.. ++|+||||+|.+||+++|||+||||||||.++|.|+..|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 3789999999986532 3999999999999999999999999999999999999999999999998776543 447888
Q ss_pred HceEEeccCC-Ccc--ccHHHHHhcCC----CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHH
Q 003976 453 QMGLVSQEPA-LFA--TSIANNILLGK----EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 453 ~i~~V~Q~~~-lf~--~Ti~eNi~~g~----~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiai 525 (782)
.|-+|+|||. =+| -||++-|.=+. -+-.++++.++++..++.+-. .-.+..+|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHHHHHHH
Confidence 9999999996 233 26666553221 112345577777777764422 223456899999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCC--eEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~--T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||||.-+|++||||||||+||...++.|.+.+.++.+++ |.|+|||+++.+.+ ||||+||++|+|||.++-+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999999999887655 99999999999976 999999999999999999999876
Q ss_pred -CchhHHH
Q 003976 603 -GGEYAAL 609 (782)
Q Consensus 603 -~~~y~~l 609 (782)
.-.|.+.
T Consensus 233 ~~h~ytr~ 240 (252)
T COG1124 233 PSHPYTRE 240 (252)
T ss_pred CccHHHHH
Confidence 4455543
No 95
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-45 Score=399.92 Aligned_cols=215 Identities=36% Similarity=0.577 Sum_probs=184.4
Q ss_pred EEEEeEEEEcCCC--CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH---HH
Q 003976 377 IEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---LR 451 (782)
Q Consensus 377 i~~~~v~f~y~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~---lR 451 (782)
|+++||+|+|+.+ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999731 234999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hHceEEeccCCCcc-ccHHHHHhcCCC--CCCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 452 EQMGLVSQEPALFA-TSIANNILLGKE--DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 452 ~~i~~V~Q~~~lf~-~Ti~eNi~~g~~--~~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
++||||+|++.+|. .|++||+.++.. ..+.+ ++.++++..+ ++........+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVG-----------LSDKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhhCChhhCCHHHHHHHH
Confidence 89999999999987 699999998632 12222 2333333333 333334455789999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
|||||+++|+|||||||||+||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7999999999999875 99999999999999999999986
Q ss_pred c
Q 003976 602 K 602 (782)
Q Consensus 602 ~ 602 (782)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
No 96
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=7.3e-45 Score=381.34 Aligned_cols=212 Identities=34% Similarity=0.580 Sum_probs=180.7
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH---HHHHhH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL---KWLREQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~---~~lR~~ 453 (782)
|+++||+++|+. ..++|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|.++.+++. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 689999999962 2349999999999999999999999999999999999999999999999999987754 457889
Q ss_pred ceEEeccCCCcc-ccHHHHHhcCCCCC-----------C---HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHH
Q 003976 454 MGLVSQEPALFA-TSIANNILLGKEDA-----------S---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 518 (782)
Q Consensus 454 i~~V~Q~~~lf~-~Ti~eNi~~g~~~~-----------~---~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgG 518 (782)
++||+|++.+|. .|++||+.++.... . ++++.++++.. |++........+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV-----------GLADKAYQRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCHH
Confidence 999999999887 59999998764211 1 12233333333 3334445566799999
Q ss_pred HHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecC
Q 003976 519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGT 595 (782)
Q Consensus 519 QkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~ 595 (782)
||||++||||++++|++|||||||++||+.+++.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999999874 3789999999999985 599999999999999999
Q ss_pred hhHHh
Q 003976 596 HVDLI 600 (782)
Q Consensus 596 ~~eL~ 600 (782)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99873
No 97
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-44 Score=384.19 Aligned_cols=220 Identities=33% Similarity=0.539 Sum_probs=189.9
Q ss_pred cCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--cC
Q 003976 374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQ 446 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~~--~~ 446 (782)
.+.|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 4579999999999743 49999999999999999999999999999999999996 589999999999863 45
Q ss_pred HHHHHhHceEEeccCCCccccHHHHHhcCCC---CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHH
Q 003976 447 LKWLREQMGLVSQEPALFATSIANNILLGKE---DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 519 (782)
Q Consensus 447 ~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~---~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQ 519 (782)
...+|++|+||+|++.+|..|++||+.++.. ..+. +++.++++..++.+.+ .+...+...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHH
Confidence 6788999999999999999999999998632 1222 3445555555543332 234566778999999
Q ss_pred HHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhH
Q 003976 520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 520 kQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~e 598 (782)
|||++||||++++|+||||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877889999999999985 499999999999999999999
Q ss_pred Hhhc
Q 003976 599 LISK 602 (782)
Q Consensus 599 L~~~ 602 (782)
+...
T Consensus 242 ~~~~ 245 (260)
T PRK10744 242 IFTK 245 (260)
T ss_pred HHhC
Confidence 8764
No 98
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=6.6e-45 Score=376.42 Aligned_cols=217 Identities=27% Similarity=0.449 Sum_probs=181.8
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH-HhHce
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQMG 455 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l-R~~i~ 455 (782)
|+++||+++|++. ++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |++++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 5789999999743 49999999999999999999999999999999999999999999999999988877654 67799
Q ss_pred EEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc
Q 003976 456 LVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ 534 (782)
||+|++.+|.. |++||+.++.+....++..+ +...+.+.+..++ ........+||||||||++||||++++|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~--~~~~~l~~~~~l~----~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKA--RLERVYELFPRLK----ERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHH--HHHHHHHHHHhhh----hhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999986 99999998754221111111 1112222222233 33345567899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 535 ILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 535 illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
+|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 999999999999999999999999875 57899999999998755 99999999999999999988753
No 99
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.8e-44 Score=382.70 Aligned_cols=241 Identities=27% Similarity=0.470 Sum_probs=206.6
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHc
Q 003976 347 ANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 347 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
+.+.+++..+++. + +..+.+...+.|+++|+++.. .++|+|+||+|++||+++|+||||||||||+++|+|
T Consensus 15 ~~~~~~~~~~~~~-~----~~~~~~~~~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 15 EGFGELLEKAKQE-N----NDRKHSSDDNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred HHHHHHHhccccc-c----cccccCCCCCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455666554432 1 122223344679999999962 249999999999999999999999999999999999
Q ss_pred CCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccc
Q 003976 427 LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 506 (782)
Q Consensus 427 ~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t 506 (782)
+++|++|+|.++| .|+|++|++.+|+.|++||+.++.. ....++.++++.+++.+.+..+|.+++|
T Consensus 86 l~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 86 ELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 9999999999999 3999999999999999999998753 3345667777888899999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHH-HHHHhCCCeEEEEecCcchhhhcCEEEEE
Q 003976 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA-LEKIMSNRTTIVVAHRLSTVRDVDTIMVL 585 (782)
Q Consensus 507 ~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~-l~~~~~~~T~i~iaHrl~~i~~aD~I~vl 585 (782)
.+++.+.+||||||||++||||++++|++|||||||++||+.++..+.+. ++++.+++|+|+|||+++.+..||+|++|
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l 231 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999988875 45666789999999999999999999999
Q ss_pred eCCEEEEecChhHHhhcCchhHHHH
Q 003976 586 KNGQVVESGTHVDLISKGGEYAALV 610 (782)
Q Consensus 586 ~~G~ive~G~~~eL~~~~~~y~~l~ 610 (782)
++|++++.|+++++.+....|.+.+
T Consensus 232 ~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 232 HEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred ECCEEEEECCHHHHHhcchHHHHHH
Confidence 9999999999999987655565544
No 100
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-45 Score=378.25 Aligned_cols=214 Identities=36% Similarity=0.556 Sum_probs=182.7
Q ss_pred EEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH---HHH
Q 003976 377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLR 451 (782)
Q Consensus 377 i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~---~lR 451 (782)
|+++|++++|+++. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997541 1599999999999999999999999999999999999999999999999999877654 357
Q ss_pred hHceEEeccCCCcc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 452 EQMGLVSQEPALFA-TSIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 452 ~~i~~V~Q~~~lf~-~Ti~eNi~~g~~--~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
+.|+|++|++.+|. .|++||+.++.. ..+ .+++.++++..++ +........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGL-----------EDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhhcChhhCCHHHHHHHH
Confidence 89999999999997 599999987532 112 2233444444444 33334455789999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
||||++++|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999875 37999999999999865 89999999999999999998865
No 101
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=388.94 Aligned_cols=217 Identities=33% Similarity=0.546 Sum_probs=185.4
Q ss_pred EEEEeEEEEcCCCC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC--HHHHH
Q 003976 377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ--LKWLR 451 (782)
Q Consensus 377 i~~~~v~f~y~~~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~--~~~lR 451 (782)
|+++||+|+|+... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997432 24999999999999999999999999999999999999999999999999998754 45788
Q ss_pred hHceEEeccC--CCccccHHHHHhcCCC--CCCHHH----HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 452 EQMGLVSQEP--ALFATSIANNILLGKE--DASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 452 ~~i~~V~Q~~--~lf~~Ti~eNi~~g~~--~~~~~~----i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
++||||+|+| .+|+.|++|||.++.. ..+.++ +.++++.+++. +.+.......+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 5788999999998642 233333 33444443332 11334556679999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 799999999999885 59999999999999999999986
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 54
No 102
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-45 Score=363.78 Aligned_cols=214 Identities=35% Similarity=0.583 Sum_probs=188.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC---HHHHHh
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKWLRE 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~---~~~lR~ 452 (782)
.|+++||+..||++ ..+|+||||+|++||+|||+||||||||||++.|.|+.+|++|+|.++|.++..++ ++.+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 48999999999853 45999999999999999999999999999999999999999999999999999998 667899
Q ss_pred HceEEeccCCCccc-cHHHHHhcCCCCC-----------CHHH---HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCH
Q 003976 453 QMGLVSQEPALFAT-SIANNILLGKEDA-----------SMDR---VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG 517 (782)
Q Consensus 453 ~i~~V~Q~~~lf~~-Ti~eNi~~g~~~~-----------~~~~---i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSg 517 (782)
+||+++|++.|-+. |+.+|+..|+-+. +.++ ..+|++..++.+.. -.+..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A-----------~qra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA-----------YQRASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH-----------HHHhccCCc
Confidence 99999999999875 9999999986322 2333 34555555555443 356679999
Q ss_pred HHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEec
Q 003976 518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594 (782)
Q Consensus 518 GQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G 594 (782)
||+||++|||||+++|+|+|=|||+|+|||.+.+.|++.|++.. .|.|+|+.-|.+...++ ||||+=|++|+|+..|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999998774 58999999999999865 8999999999999999
Q ss_pred ChhHHhh
Q 003976 595 THVDLIS 601 (782)
Q Consensus 595 ~~~eL~~ 601 (782)
+.+||-+
T Consensus 231 ~~~el~~ 237 (258)
T COG3638 231 PASELTD 237 (258)
T ss_pred ChhhhhH
Confidence 9999754
No 103
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=389.05 Aligned_cols=220 Identities=32% Similarity=0.591 Sum_probs=187.6
Q ss_pred EEEEeEEEEcCCCC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCc----CHHH
Q 003976 377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLKW 449 (782)
Q Consensus 377 i~~~~v~f~y~~~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~----~~~~ 449 (782)
|+++||+|+|++++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 2499999999999999999999999999999999999999999999999999754 3467
Q ss_pred HHhHceEEeccC--CCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHhHHhcCCCCccc-cccCCCCCCCHHHHHHHH
Q 003976 450 LREQMGLVSQEP--ALFATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 450 lR~~i~~V~Q~~--~lf~~Ti~eNi~~g~~~--~~~~~i~~a~~~a~~~~~i~~lp~G~~t-~vge~G~~LSgGQkQRia 524 (782)
+|++||||+|+| .+|..|++|||.++... .+.++..+. +.+.+..+ |+++ .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999998 68889999999987422 233333322 12334433 6653 345667899999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
|||||+.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999875 4899999999999875 589999999999999999999876
Q ss_pred cC
Q 003976 602 KG 603 (782)
Q Consensus 602 ~~ 603 (782)
..
T Consensus 236 ~~ 237 (286)
T PRK13646 236 DK 237 (286)
T ss_pred CH
Confidence 43
No 104
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-45 Score=380.90 Aligned_cols=211 Identities=31% Similarity=0.519 Sum_probs=180.2
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+++|++ .++|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|.++...+. .|++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999975 349999999999999999999999999999999999999999999999999876653 3678999
Q ss_pred EeccCCCcc-ccHHHHHhcCCCCC------CH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHH
Q 003976 457 VSQEPALFA-TSIANNILLGKEDA------SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 457 V~Q~~~lf~-~Ti~eNi~~g~~~~------~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiai 525 (782)
|+|+|.+|. .|++||+.++.... +. +++.++++..++ +........+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQL-----------DWLADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCC-----------hhhhhcChhhCCHHHHHHHHH
Confidence 999999996 59999999864211 11 223333444333 333344556899999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|||++++|++|||||||++||+++++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999999998753 7899999999998754 999999999999999999998754
No 105
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.6e-45 Score=400.17 Aligned_cols=213 Identities=30% Similarity=0.484 Sum_probs=185.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. ++.||
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999974 2489999999999999999999999999999999999999999999999999887764 67899
Q ss_pred EEeccCCCcc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPALFA-TSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~lf~-~Ti~eNi~~g~~~--~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
||+|++.||. .|++|||.|+... .+ .+++.++++..++.+ .......+||||||||+|||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-----------SERKYPGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-----------hhhCChhhCCHHHHHHHHHHHH
Confidence 9999999996 6999999997432 12 233444444444443 3445567899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
|+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. -||+|++|++|+|++.|+++|+..+.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999999998754 789999999999874 59999999999999999999998763
No 106
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-44 Score=385.47 Aligned_cols=218 Identities=30% Similarity=0.520 Sum_probs=190.1
Q ss_pred cEEEEeEEEEcCCCC-CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 376 QIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
-|+++||+++|++.. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 489999999997533 2499999999999999999999999999999999999999999999999999888888889999
Q ss_pred eEEeccC--CCccccHHHHHhcCCC--CCCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 455 GLVSQEP--ALFATSIANNILLGKE--DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 455 ~~V~Q~~--~lf~~Ti~eNi~~g~~--~~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
+||+|+| .++..|+.|||.++.. ..+.+ ++.++++..++.++... ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4677899999997632 22333 34555666666555433 3468999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCc
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGG 604 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~ 604 (782)
||++++|+||||||||++||+.+.+.+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++....+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 999999999999999999999999999999998854 799999999999998899999999999999999999876543
No 107
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-44 Score=369.20 Aligned_cols=199 Identities=38% Similarity=0.585 Sum_probs=182.4
Q ss_pred EEEEeEEEEcCCCC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhH
Q 003976 377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~ 453 (782)
|+++||+++|+++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57899999997542 2599999999999999999999999999999999999999999999999 5
Q ss_pred ceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 454 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 454 i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
|+||+|+|.+|+.|++||+.++.+ .+++++.++++.+++.+++..+|.|++|.+++++.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999754 4566778888888999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHH-HHHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCE
Q 003976 534 KILLLDEATSALDAESELIVQR-ALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQ 589 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~-~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~ 589 (782)
+++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||+|++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 456553 4799999999999998899999999985
No 108
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=384.18 Aligned_cols=220 Identities=30% Similarity=0.500 Sum_probs=189.3
Q ss_pred cCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--cC
Q 003976 374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQ 446 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~--~~ 446 (782)
.+.|+++||+++|++ .++|+|+||+|++|++++|+||||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 457999999999974 3499999999999999999999999999999999999975 89999999999975 45
Q ss_pred HHHHHhHceEEeccCCCccccHHHHHhcCCC--CC--C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHH
Q 003976 447 LKWLREQMGLVSQEPALFATSIANNILLGKE--DA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 518 (782)
Q Consensus 447 ~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~--~~--~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgG 518 (782)
...+|+.|+||+|+|.+|+.|++||+.++.. .. + ++++.++++..++.+++. +.......+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 6678999999999999999999999987531 11 1 233455566555544332 2345567789999
Q ss_pred HHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChh
Q 003976 519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHV 597 (782)
Q Consensus 519 QkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~ 597 (782)
||||++||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|+|++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778999999999999854 8999999999999999999
Q ss_pred HHhhc
Q 003976 598 DLISK 602 (782)
Q Consensus 598 eL~~~ 602 (782)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14235 248 KMFTN 252 (267)
T ss_pred HHHhC
Confidence 98753
No 109
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=380.87 Aligned_cols=218 Identities=30% Similarity=0.466 Sum_probs=186.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCC--CcCHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLK--SLQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~--~~~~~ 448 (782)
-|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCCe--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 48999999999753 499999999999999999999999999999999999987 4999999999997 45666
Q ss_pred HHHhHceEEeccCCCccc-cHHHHHhcCCC--CC--CH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHH
Q 003976 449 WLREQMGLVSQEPALFAT-SIANNILLGKE--DA--SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 519 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~--~~--~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQ 519 (782)
.+|++++|++|++.+|.. |++||+.++.. +. .. +++.++++..++.+++ .........+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHHH
Confidence 788999999999999976 99999987531 10 11 2344444444443322 123455667999999
Q ss_pred HHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhH
Q 003976 520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 520 kQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~e 598 (782)
|||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999765 99999999999999999999
Q ss_pred Hhhc
Q 003976 599 LISK 602 (782)
Q Consensus 599 L~~~ 602 (782)
+...
T Consensus 235 ~~~~ 238 (253)
T PRK14267 235 VFEN 238 (253)
T ss_pred HHhC
Confidence 8764
No 110
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-45 Score=374.14 Aligned_cols=203 Identities=35% Similarity=0.577 Sum_probs=173.0
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCCe--eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 4789999999753 49999999999999999999999999999999999999999999999999987553 4678999
Q ss_pred EeccCCCcc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALFA-TSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf~-~Ti~eNi~~g~~~--~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
|+|++.+|. .|++||+.++... .+. +++.++++..++.++ ......+||||||||++||||+
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGL-----------LNRYPHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHHHHHH
Confidence 999999886 5999999876321 111 234444444444333 3344468999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEec
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G 594 (782)
+++|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999875 38999999999998755 9999999999998876
No 111
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.9e-44 Score=375.34 Aligned_cols=216 Identities=30% Similarity=0.531 Sum_probs=185.3
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+... +++++|
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGAR--RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 6899999999743 4999999999999999999999999999999999999999999999999998877654 458999
Q ss_pred EeccCCCc-cccHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 457 VSQEPALF-ATSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 457 V~Q~~~lf-~~Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
++|++.++ ..|++||+.++.. ..+.++..+ .+.+++..+ |++........+||||||||++||||++++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999884 5799999987532 122222211 223344443 5555566777899999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999875 48999999999999988999999999999999999999875
No 112
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-44 Score=383.03 Aligned_cols=216 Identities=29% Similarity=0.578 Sum_probs=187.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++|++++|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|+
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 48999999999743335999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEeccC--CCccccHHHHHhcCCCC--CCHHH----HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 456 LVSQEP--ALFATSIANNILLGKED--ASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 456 ~V~Q~~--~lf~~Ti~eNi~~g~~~--~~~~~----i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
||+|+| .++..|++|||.++... .+.++ +.++++..++.+++. ....+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHHHH
Confidence 999998 45567999999986321 23332 444555555554443 344699999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998753 4899999999999988999999999999999999988754
No 113
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.4e-44 Score=397.79 Aligned_cols=212 Identities=33% Similarity=0.573 Sum_probs=188.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.. ++.|+
T Consensus 14 ~L~l~~l~~~~~~~--~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 59999999999742 499999999999999999999999999999999999999999999999999887764 56899
Q ss_pred EEeccCCCccc-cHHHHHhcCCCC--CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~--~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
||+|++.||.. |++|||.|+... .+ .+++.++++..++.++..+.| .+||||||||+|||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 999999997431 12 234666777777776666555 5899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||++..+. .||+|++|++|+|++.|+++++..+
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998754 799999999999864 5999999999999999999999876
No 114
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-44 Score=386.78 Aligned_cols=216 Identities=29% Similarity=0.480 Sum_probs=183.5
Q ss_pred EEEEeEEEEcCCCC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC----cCHHH
Q 003976 377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS----LQLKW 449 (782)
Q Consensus 377 i~~~~v~f~y~~~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~----~~~~~ 449 (782)
|+++||+|+|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 249999999999999999999999999999999999999999999999999864 34567
Q ss_pred HHhHceEEeccC--CCccccHHHHHhcCCCC--CCHHH----HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 450 LREQMGLVSQEP--ALFATSIANNILLGKED--ASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 450 lR~~i~~V~Q~~--~lf~~Ti~eNi~~g~~~--~~~~~----i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
+|+.||||+|+| .+|+.|++|||.|+... .+.++ +.++++..++++ ........+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE----------ELLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh----------hhhhCCcccCCHHHHH
Confidence 888999999998 68889999999987432 23333 333444443321 1123455789999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhH
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~e 598 (782)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 899999999999985 599999999999999999999
Q ss_pred Hhhc
Q 003976 599 LISK 602 (782)
Q Consensus 599 L~~~ 602 (782)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
No 115
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.7e-44 Score=397.66 Aligned_cols=213 Identities=30% Similarity=0.481 Sum_probs=186.2
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCc--cEEEECCeeCCCcCHHHHHh
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS--GKILLDGHDLKSLQLKWLRE 452 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~--G~I~i~g~di~~~~~~~lR~ 452 (782)
|.|+++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|.|+++|++ |+|.+||.++.+.+. .++
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred eEEEEEEEEEEECCe--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 579999999999743 49999999999999999999999999999999999999999 999999999987665 357
Q ss_pred HceEEeccCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHH
Q 003976 453 QMGLVSQEPALFAT-SIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 453 ~i~~V~Q~~~lf~~-Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiai 525 (782)
.|+||+|++.||.. |++|||.|+.. ..+. +++.++++..++.++..+. ..+||||||||+||
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRvaL 148 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL-----------PAQLSGGMQQRIAI 148 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCC-----------hhhCCHHHHHHHHH
Confidence 89999999999965 99999998742 1222 3455556665655555444 45899999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC---CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS---NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~---~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
||||+++|++||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+. -||+|++|++|++++.|+++|+..
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999988754 689999999999875 599999999999999999999987
Q ss_pred c
Q 003976 602 K 602 (782)
Q Consensus 602 ~ 602 (782)
+
T Consensus 229 ~ 229 (362)
T TIGR03258 229 A 229 (362)
T ss_pred C
Confidence 6
No 116
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-44 Score=379.06 Aligned_cols=219 Identities=32% Similarity=0.556 Sum_probs=187.5
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--cCH
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQL 447 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~--~~~ 447 (782)
|.|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.+||.++.+ .+.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 469999999999753 499999999999999999999999999999999999863 69999999999875 456
Q ss_pred HHHHhHceEEeccCCCccccHHHHHhcCCCC--C-----CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 448 KWLREQMGLVSQEPALFATSIANNILLGKED--A-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 448 ~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~--~-----~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
..+|+.|+||+|++.+|+.|++||+.++... . .++++.++++.+++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 6789999999999999999999999986321 1 1233445555555443332 234556679999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL 599 (782)
||++||||++.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998755 999999999999999999998
Q ss_pred hhc
Q 003976 600 ISK 602 (782)
Q Consensus 600 ~~~ 602 (782)
...
T Consensus 233 ~~~ 235 (250)
T PRK14240 233 FTN 235 (250)
T ss_pred HhC
Confidence 754
No 117
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.9e-44 Score=396.50 Aligned_cols=212 Identities=31% Similarity=0.507 Sum_probs=184.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||+++.+.+. .|+.|+
T Consensus 2 ~L~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCCe--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 38899999999753 49999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEeccCCCccc-cHHHHHhcCCCC------CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGKED------AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~------~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
||+|++.+|.. |++|||.|+... .+ ++++.++++..++.++.. ....+||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 99999999974 999999997431 12 234455555555544433 344689999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
|||||+++|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998764 7899999999998655 99999999999999999999987
Q ss_pred c
Q 003976 602 K 602 (782)
Q Consensus 602 ~ 602 (782)
+
T Consensus 227 ~ 227 (353)
T PRK10851 227 E 227 (353)
T ss_pred C
Confidence 5
No 118
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.3e-44 Score=373.14 Aligned_cols=203 Identities=33% Similarity=0.518 Sum_probs=172.8
Q ss_pred EEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH----HH
Q 003976 377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK----WL 450 (782)
Q Consensus 377 i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~----~l 450 (782)
|+++||+++|++.. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997521 3499999999999999999999999999999999999999999999999999887643 34
Q ss_pred HhHceEEeccCCCccc-cHHHHHhcCCCC--CCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 451 REQMGLVSQEPALFAT-SIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 451 R~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~--~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
|++++||+|++.+|.. |++||+.++... ... +++.++++.. |++........+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERV-----------GLGDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHc-----------CCchhhhcChhhcCHHHHHHH
Confidence 6789999999999986 999999986421 111 2233333333 444444555678999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhhcCEEEEEeCCEE
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQV 590 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~aD~I~vl~~G~i 590 (782)
+||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998864 7999999999999988999999999974
No 119
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.2e-44 Score=370.20 Aligned_cols=199 Identities=31% Similarity=0.547 Sum_probs=173.7
Q ss_pred EEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEE
Q 003976 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 457 (782)
Q Consensus 378 ~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V 457 (782)
+++||+++|++. ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. ...|++|+|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 368999999752 249999999999999999999999999999999999999999999999998864 4567889999
Q ss_pred eccC--CCccccHHHHHhcCCCCC--CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 458 SQEP--ALFATSIANNILLGKEDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 458 ~Q~~--~lf~~Ti~eNi~~g~~~~--~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
+|+| .+|..|++||+.++.+.. .++++.++++..++.++..+.| ..||||||||++||||++.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467889999999875322 2346677777777766654444 479999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHH-hCCCeEEEEecCcchhhh-cCEEEEEeCCEEE
Q 003976 534 KILLLDEATSALDAESELIVQRALEKI-MSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVV 591 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~-~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~iv 591 (782)
++|||||||++||+.+++.+.+.|+++ .+++|+|++||+++.+.. ||+|++|++|++|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999987 467999999999999875 9999999999985
No 120
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-44 Score=375.24 Aligned_cols=209 Identities=29% Similarity=0.515 Sum_probs=178.7
Q ss_pred cEEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH---H
Q 003976 376 QIEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---L 450 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~---l 450 (782)
-|+++||+|+|+++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997532 34999999999999999999999999999999999999999999999999999887654 3
Q ss_pred H-hHceEEeccCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 451 R-EQMGLVSQEPALFAT-SIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 451 R-~~i~~V~Q~~~lf~~-Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
| +.++||+|++.+|.. |++||+.++.. .... +++.++++.. |++........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV-----------GLEHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHH
Confidence 3 679999999999976 99999987421 1122 2233334333 44444455567899999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhhcCEEEEEeCCEEEEecC
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~ 595 (782)
++||||++.+|+||||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4899999999999999999999999999998876
No 121
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-44 Score=370.15 Aligned_cols=210 Identities=31% Similarity=0.571 Sum_probs=187.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++|++|+|.++ ++|+||||+|++|++++|+||+|||||||+++|+|+..|.+|+|.+.|.++++... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999754 49999999999999999999999999999999999999999999999998776543 46799
Q ss_pred EEeccC---CCccccHHHHHhcCCCC----------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 456 LVSQEP---ALFATSIANNILLGKED----------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 456 ~V~Q~~---~lf~~Ti~eNi~~g~~~----------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
||||.. +-|.-||+|=+.+|+.. .+.+++.+|++.+++.++. +-+|| .|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i~----~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQIG----ELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCccc----ccCcHHHHH
Confidence 999954 67899999999998532 1348899999999999887 33455 699999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
+.|||||+++|++|+|||||+++|+.++..|.+.|+++++ |+|+++|+|+|+.+.. +|+|+.|+ ++++..|+.+|..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 9999999999999999999999999999999999999865 8999999999999855 89999995 6788999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
..
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
No 122
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-44 Score=370.03 Aligned_cols=203 Identities=26% Similarity=0.488 Sum_probs=177.0
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+|+|+++ ++|+|+||++++| .++|+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++|
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 5789999999753 4999999999999 99999999999999999999999999999999999998877 778999999
Q ss_pred EeccCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALFAT-SIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~--~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
|+|++.+|.. |++||+.+... ..+ ++++.++++..++.++. ++ ...+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-------KK----KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-------hC----chhhCCHHHHHHHHHHHHH
Confidence 9999999986 99999987421 111 23455566666655443 22 3357999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEec
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G 594 (782)
+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998778999999999999864 8999999999999865
No 123
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-44 Score=383.18 Aligned_cols=216 Identities=32% Similarity=0.573 Sum_probs=189.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCc---cEEEECCeeCCCcCHHHHHh
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS---GKILLDGHDLKSLQLKWLRE 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~---G~I~i~g~di~~~~~~~lR~ 452 (782)
.|+++|++|+|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+|+
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 589999999997533349999999999999999999999999999999999999998 89999999998888788899
Q ss_pred HceEEeccC--CCccccHHHHHhcCCCC--CCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 453 QMGLVSQEP--ALFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 453 ~i~~V~Q~~--~lf~~Ti~eNi~~g~~~--~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
+||||+|+| .+++.|++|||.++.+. .+. +++.++++..++.++....| .+||||||||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHH
Confidence 999999998 46678999999986432 233 33556666666665554443 689999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||||++.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998753 7999999999999988999999999999999999998653
No 124
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-44 Score=379.58 Aligned_cols=218 Identities=29% Similarity=0.449 Sum_probs=186.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC--C---CccEEEECCeeCCC--cCHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--P---TSGKILLDGHDLKS--LQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~--~---~~G~I~i~g~di~~--~~~~ 448 (782)
-|+++||++.|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 48999999999743 49999999999999999999999999999999999997 3 59999999999864 4556
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCC---CCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKED---ASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~---~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|+.|+|++|++.+|+.|++||+.++... .+++ ++.++++..++.+++ .+.......+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence 788999999999999999999999886321 1222 233444444444333 23345567799999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++++|+||||||||++||+.++..+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999877899999999999986 48999999999999999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
+.
T Consensus 243 ~~ 244 (259)
T PRK14274 243 SN 244 (259)
T ss_pred hC
Confidence 54
No 125
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-44 Score=384.35 Aligned_cols=212 Identities=33% Similarity=0.534 Sum_probs=181.4
Q ss_pred EEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH----HhH
Q 003976 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL----REQ 453 (782)
Q Consensus 378 ~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l----R~~ 453 (782)
.++||+++|.. ..+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.+||.++.+++..++ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 45677777753 238999999999999999999999999999999999999999999999999988776554 468
Q ss_pred ceEEeccCCCcc-ccHHHHHhcCCC--CC----CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 454 MGLVSQEPALFA-TSIANNILLGKE--DA----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 454 i~~V~Q~~~lf~-~Ti~eNi~~g~~--~~----~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
++||+|++.+|. .|++||+.++.. .. .++++.++++..++.+++...| .+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999985 599999987531 11 1234566666666666555444 47999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||++++|+||||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+. .||+|++|++|++++.|+++|+...
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999874 3799999999999875 4899999999999999999999764
No 126
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-44 Score=383.86 Aligned_cols=216 Identities=31% Similarity=0.522 Sum_probs=189.0
Q ss_pred cEEEEeEEEEcCCCC----CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC-HHHH
Q 003976 376 QIEFSEVCFAYPSRP----HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWL 450 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~----~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~-~~~l 450 (782)
-|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 24999999999999999999999999999999999999999999999999997654 4567
Q ss_pred HhHceEEeccCC--CccccHHHHHhcCCCC--CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 451 REQMGLVSQEPA--LFATSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 451 R~~i~~V~Q~~~--lf~~Ti~eNi~~g~~~--~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
|+.|+||+|+|. +|..|+.||+.|+... .+ ++++.++++..++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 7777999999987321 12 344666677777766665443 5899999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHh
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
++||||++++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..||++++|++|+|++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 389999999999999889999999999999999999997
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
+.
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 65
No 127
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=378.50 Aligned_cols=218 Identities=32% Similarity=0.469 Sum_probs=187.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCcCHHHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSLQLKWL 450 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~~~~~~l 450 (782)
.|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.+++...+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 48999999999753 499999999999999999999999999999999999984 69999999999998888889
Q ss_pred HhHceEEeccCCCc-cccHHHHHhcCCCC----CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 451 REQMGLVSQEPALF-ATSIANNILLGKED----AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 451 R~~i~~V~Q~~~lf-~~Ti~eNi~~g~~~----~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
|+.|+||+|+|.+| +.|++||+.++... .. .+++.++++..++.+.+. ........+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHHH
Confidence 99999999999765 57999999876321 01 234555555555543321 2233445689999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++++|+||||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999999877899999999999985 59999999999999999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
+.
T Consensus 234 ~~ 235 (250)
T PRK14247 234 TN 235 (250)
T ss_pred cC
Confidence 54
No 128
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-44 Score=382.07 Aligned_cols=220 Identities=30% Similarity=0.498 Sum_probs=190.0
Q ss_pred cCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--cC
Q 003976 374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQ 446 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~--~~ 446 (782)
.+.|+++||+|+|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.. .+
T Consensus 23 ~~~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 4469999999999743 499999999999999999999999999999999999984 89999999999875 45
Q ss_pred HHHHHhHceEEeccCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHH
Q 003976 447 LKWLREQMGLVSQEPALFATSIANNILLGKE--DA-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 519 (782)
Q Consensus 447 ~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~--~~-~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQ 519 (782)
..++|+.++|++|++.+|+.|++||+.++.. .. . ++++.++++.+++.+++ .+..+..+.+|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHHH
Confidence 6688999999999999999999999987632 11 1 23355555555554433 234566778999999
Q ss_pred HHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhH
Q 003976 520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 520 kQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~e 598 (782)
|||++||||++++|+||||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999975 599999999999999999999
Q ss_pred Hhhc
Q 003976 599 LISK 602 (782)
Q Consensus 599 L~~~ 602 (782)
+.+.
T Consensus 254 ~~~~ 257 (272)
T PRK14236 254 LFTS 257 (272)
T ss_pred HhcC
Confidence 8754
No 129
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-44 Score=376.48 Aligned_cols=218 Identities=33% Similarity=0.560 Sum_probs=184.1
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
++++||+++|++. ..+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999752 249999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EeccCCCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccc--cccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 457 VSQEPALFA-TSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQT--QVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 457 V~Q~~~lf~-~Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t--~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
++|+|.+|. .|++||+.++.. ..+.++.. ..+.+.+..+ |+.. .......+||||||||++||||+++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAA 152 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhc
Confidence 999999996 599999987632 11111111 1122333333 3332 3456678999999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999998753 899999999999865 5899999999999999999998654
No 130
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.4e-44 Score=378.47 Aligned_cols=213 Identities=34% Similarity=0.550 Sum_probs=182.4
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC----------
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---------- 446 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~---------- 446 (782)
|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++
T Consensus 1 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCCe--eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 5799999999743 4999999999999999999999999999999999999999999999999997653
Q ss_pred ---HHHHHhHceEEeccCCCcc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCC
Q 003976 447 ---LKWLREQMGLVSQEPALFA-TSIANNILLGKE---DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 515 (782)
Q Consensus 447 ---~~~lR~~i~~V~Q~~~lf~-~Ti~eNi~~g~~---~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~L 515 (782)
...+|+.++||+|++.+|. .|++||+.++.. .... +++.++++.. |++........+|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV-----------GLADKADHMPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhHhhcChhhc
Confidence 3467889999999999886 699999998521 1122 2233333333 3444445556789
Q ss_pred CHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEE
Q 003976 516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVE 592 (782)
Q Consensus 516 SgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive 592 (782)
|||||||++||||++++|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 789999999999985 599999999999999
Q ss_pred ecChhHHhhc
Q 003976 593 SGTHVDLISK 602 (782)
Q Consensus 593 ~G~~~eL~~~ 602 (782)
.|+++++.+.
T Consensus 228 ~g~~~~~~~~ 237 (252)
T TIGR03005 228 QGKPDEIFRQ 237 (252)
T ss_pred eCCHHHHhcC
Confidence 9999999764
No 131
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.4e-44 Score=398.84 Aligned_cols=221 Identities=26% Similarity=0.501 Sum_probs=194.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++||
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 3899999999974 34999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCC-ccccHHHHHhcCCCC----------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 456 LVSQEPAL-FATSIANNILLGKED----------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 456 ~V~Q~~~l-f~~Ti~eNi~~g~~~----------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
||+|++.+ |+.|++||+.+++.. .+.+++.++++..++.++..+ ...+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 99999987 677999999987521 123456777777777665532 34689999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|||||+++|+||||||||++||+.++..+.+.|+++. +++|+|+++|+++.+ +.||+|++|++|++++.|+++|++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999885 588999999999998 55999999999999999999998864
Q ss_pred CchhHHHH
Q 003976 603 GGEYAALV 610 (782)
Q Consensus 603 ~~~y~~l~ 610 (782)
....+.+
T Consensus 230 -~~l~~~~ 236 (402)
T PRK09536 230 -DTLRAAF 236 (402)
T ss_pred -HHHHHHh
Confidence 3444444
No 132
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-44 Score=378.30 Aligned_cols=218 Identities=31% Similarity=0.493 Sum_probs=185.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--cCHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~~--~~~~ 448 (782)
-|+++||+|+|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGNY--EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 48999999999743 49999999999999999999999999999999999997 489999999999864 4456
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCC--CC-----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKED--AS-----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~--~~-----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|+.++||+|++.+|+.|++||+.++... .. ++++.++++..++++.. .........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHHH
Confidence 788899999999999999999999876321 11 12344444444443211 12234566799999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999765 8999999999999999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
..
T Consensus 235 ~~ 236 (251)
T PRK14251 235 IA 236 (251)
T ss_pred hC
Confidence 54
No 133
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-44 Score=378.03 Aligned_cols=218 Identities=29% Similarity=0.479 Sum_probs=185.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC--C---CccEEEECCeeCCCc--CHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--P---TSGKILLDGHDLKSL--QLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~--~---~~G~I~i~g~di~~~--~~~ 448 (782)
-|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++ | ++|+|.++|+++... +..
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 48999999999743 49999999999999999999999999999999999954 6 599999999998643 456
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKE--DA-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~--~~-~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|+.++||+|++.+|+.|++||+.++.. .. . ++++.++++..++.+.+ .+.......+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHHH
Confidence 77889999999999999999999987531 11 1 12334444444443322 23456667899999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998877899999999999875 59999999999999999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
+.
T Consensus 236 ~~ 237 (252)
T PRK14239 236 MN 237 (252)
T ss_pred hC
Confidence 64
No 134
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.1e-44 Score=373.96 Aligned_cols=216 Identities=29% Similarity=0.474 Sum_probs=184.2
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH-HHhHce
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQMG 455 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~-lR~~i~ 455 (782)
|+++||+++|+++ .+|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|.++...+.+. .|+.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 5789999999743 4999999999999999999999999999999999999999999999999998877655 456799
Q ss_pred EEeccCCCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 456 LVSQEPALFAT-SIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~--~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
|++|++.+|.+ |++||+.++.+. ...++..+ .+++.+..+ |++........+||||||||++||||++.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999987 999999986421 12222111 223444444 555556677789999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999998875 4789999999998765 499999999999999999998864
No 135
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-44 Score=383.68 Aligned_cols=215 Identities=29% Similarity=0.508 Sum_probs=185.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC--CcCHHHHHhH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK--SLQLKWLREQ 453 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~--~~~~~~lR~~ 453 (782)
-|+++||+|+|+.+ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999632 24999999999999999999999999999999999999999999999999984 3456778999
Q ss_pred ceEEeccC--CCccccHHHHHhcCCCC--CCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHH
Q 003976 454 MGLVSQEP--ALFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 454 i~~V~Q~~--~lf~~Ti~eNi~~g~~~--~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiai 525 (782)
|+||+|+| .+|+.|++||+.++... .+. +++.++++..++.++ ......+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHHHH
Confidence 99999998 57889999999986321 222 234445555554433 345567999999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||||+.+|+||||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998854 899999999999986 5999999999999999999998764
No 136
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-44 Score=386.29 Aligned_cols=216 Identities=25% Similarity=0.451 Sum_probs=182.5
Q ss_pred EEEEeEEEEcCCCCC---cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC---------
Q 003976 377 IEFSEVCFAYPSRPH---MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--------- 444 (782)
Q Consensus 377 i~~~~v~f~y~~~~~---~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~--------- 444 (782)
|+++||+|+|++... ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 889999999975422 49999999999999999999999999999999999999999999999987632
Q ss_pred ---------------cCHHHHHhHceEEeccC--CCccccHHHHHhcCCCC--CCHHH----HHHHHHHhhhHhHHhcCC
Q 003976 445 ---------------LQLKWLREQMGLVSQEP--ALFATSIANNILLGKED--ASMDR----VIEAAKAANAHSFVEGLP 501 (782)
Q Consensus 445 ---------------~~~~~lR~~i~~V~Q~~--~lf~~Ti~eNi~~g~~~--~~~~~----i~~a~~~a~~~~~i~~lp 501 (782)
.+...+|+.||||+|+| .+|..|++|||.|+... .+.++ +.++++..++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------ 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE------ 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh------
Confidence 13467889999999986 68889999999987532 23333 333333333320
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchh-hhc
Q 003976 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTV-RDV 579 (782)
Q Consensus 502 ~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i-~~a 579 (782)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+ +.|
T Consensus 157 ----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 157 ----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 22345667999999999999999999999999999999999999999999998875 489999999999976 569
Q ss_pred CEEEEEeCCEEEEecChhHHhhc
Q 003976 580 DTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 580 D~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|+|++|++|+|++.|+.+++.+.
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998754
No 137
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-44 Score=380.36 Aligned_cols=213 Identities=30% Similarity=0.474 Sum_probs=187.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECCE--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 48999999999743 4999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EEeccCCCccc-cHHHHHhcCCCC----------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGKED----------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~----------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
||+|++.++.+ |++||+.++... ..++++.++++..++.+++...| .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999877665 999999986311 12345666677766655544333 479999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
||||++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+.+++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999999999999999999999999999999998753 799999999999985 599999999999999999999865
No 138
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-44 Score=377.54 Aligned_cols=218 Identities=31% Similarity=0.499 Sum_probs=185.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC---CCC--CccEEEECCeeCCCc--CHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL---YEP--TSGKILLDGHDLKSL--QLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~---~~~--~~G~I~i~g~di~~~--~~~ 448 (782)
.|+++|+++.|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999974 2499999999999999999999999999999999997 454 589999999999764 356
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCC--C-C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKED--A-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~--~-~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|+.|+||+|++.+|+.|++||+.++... . . ++++.++++..++.+++ ++.....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHHH
Confidence 788999999999999999999999876321 1 1 12344444444443333 23455677899999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999877899999999999985 59999999999999999999997
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
..
T Consensus 234 ~~ 235 (250)
T PRK14245 234 TN 235 (250)
T ss_pred cC
Confidence 54
No 139
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-44 Score=379.85 Aligned_cols=220 Identities=29% Similarity=0.466 Sum_probs=189.6
Q ss_pred cCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--cC
Q 003976 374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQ 446 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~~--~~ 446 (782)
...|+++||+++|+++ ++|+|+||++++||.++|+||||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 18 ~~~l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 18 EIALSTKDLHVYYGKK--EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred CeEEEEeeEEEEECCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 3469999999999643 49999999999999999999999999999999999997 589999999999864 34
Q ss_pred HHHHHhHceEEeccCCCccccHHHHHhcCCCC--C-C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHH
Q 003976 447 LKWLREQMGLVSQEPALFATSIANNILLGKED--A-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 519 (782)
Q Consensus 447 ~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~--~-~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQ 519 (782)
...+|+.|+||+|++.+|..|++|||.++... . + ++++.++++..++.+++ ++..+....+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHH
Confidence 66788999999999999999999999986321 1 1 23344555555554433 234566778999999
Q ss_pred HHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhH
Q 003976 520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 520 kQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~e 598 (782)
|||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999885 599999999999999999999
Q ss_pred Hhhc
Q 003976 599 LISK 602 (782)
Q Consensus 599 L~~~ 602 (782)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 8764
No 140
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-44 Score=378.63 Aligned_cols=218 Identities=29% Similarity=0.467 Sum_probs=185.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCc--CHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~~--~~~ 448 (782)
.|+++|++++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++... +..
T Consensus 12 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 59999999999743 499999999999999999999999999999999999985 799999999998654 345
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCC--CCCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKE--DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~--~~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
.+|+.++||+|++.+|+.|++||+.++.. ..+.+ ++.++++.+++.+++ ..........||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHHH
Confidence 67889999999999999999999998632 12222 234445444443221 223345567899999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
++||||++.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999988778999999999999855 99999999999999999999875
Q ss_pred c
Q 003976 602 K 602 (782)
Q Consensus 602 ~ 602 (782)
.
T Consensus 243 ~ 243 (258)
T PRK14268 243 N 243 (258)
T ss_pred C
Confidence 4
No 141
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-44 Score=379.24 Aligned_cols=216 Identities=31% Similarity=0.517 Sum_probs=186.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++|++++|+++..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++|+
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999754334999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEeccCC--CccccHHHHHhcCCCC--CCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 456 LVSQEPA--LFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 456 ~V~Q~~~--lf~~Ti~eNi~~g~~~--~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
||+|+|. ++..|+++|+.++... ... +++.++++..++.++. .....+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHHH
Confidence 9999995 4456899999887432 122 2334444444443332 3345689999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998753 7899999999999988999999999999999999998764
No 142
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-44 Score=381.02 Aligned_cols=214 Identities=29% Similarity=0.532 Sum_probs=187.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
++++||+++|+++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999642 249999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EeccC--CCccccHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 457 VSQEP--ALFATSIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 457 V~Q~~--~lf~~Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
|+|+| .+|+.|++||+.++.. ..+. +++.++++..++.+++... ...||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHHHH
Confidence 99998 4788899999987542 1232 2355666666665555443 35899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+++++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999998753 79999999999998 56999999999999999999999764
No 143
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.5e-44 Score=370.04 Aligned_cols=206 Identities=26% Similarity=0.440 Sum_probs=176.3
Q ss_pred EEEEeEEEEcCCCCC--cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 377 IEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 377 i~~~~v~f~y~~~~~--~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
|+++||+++|+++.. ++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999975421 49999999999999999999999999999999999999999999999999976 456778999
Q ss_pred eEEeccCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 455 GLVSQEPALFAT-SIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
+|++|++.+|.. |++||+.+... ..+. +++.++++..+ ++........+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG-----------MEELLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CHHHHhhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999987432 1122 23334444443 444445566789999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEec
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G 594 (782)
|++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 48999999999998765 8999999999998765
No 144
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-44 Score=396.64 Aligned_cols=212 Identities=31% Similarity=0.517 Sum_probs=183.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++|++++|+++ .+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++.+++.. ++.|+
T Consensus 3 ~l~i~~l~~~~~~~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 48999999999742 499999999999999999999999999999999999999999999999999877653 56899
Q ss_pred EEeccCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
||+|++.+|.. |++|||.|+.. ..+. +++.++++..++.++.. ....+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999998743 1222 34555555555544443 3346899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|+++|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++...
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988753 799999999999875 4999999999999999999999765
No 145
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.3e-44 Score=374.51 Aligned_cols=211 Identities=28% Similarity=0.461 Sum_probs=180.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH-HHhHce
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQMG 455 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~-lR~~i~ 455 (782)
|+++||++.|+++ ++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 5789999999743 4999999999999999999999999999999999999999999999999998887655 467899
Q ss_pred EEeccCCCccc-cHHHHHhcCCCCCC--HHH-HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 456 LVSQEPALFAT-SIANNILLGKEDAS--MDR-VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~~~--~~~-i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
|++|++.+|.. |++||+.++..... .++ ..++++..+ +++........+||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999986 99999998643221 111 122222211 22333455667899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL 599 (782)
+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999998764 7899999999999985 999999999999999999987
No 146
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.9e-44 Score=369.73 Aligned_cols=204 Identities=30% Similarity=0.526 Sum_probs=172.9
Q ss_pred EEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH---HH
Q 003976 377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---LR 451 (782)
Q Consensus 377 i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~---lR 451 (782)
|+++||+++|++.. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997432 24999999999999999999999999999999999999999999999999998887644 34
Q ss_pred -hHceEEeccCCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 452 -EQMGLVSQEPALFA-TSIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 452 -~~i~~V~Q~~~lf~-~Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
+.|+||+|++.+|. .|++||+.++.. ..+. +++.++++.. |++.........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKV-----------GLEHRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhhhhCChhhCCHHHHHHH
Confidence 67999999999996 599999987421 1121 1223333333 444444555578999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhhcCEEEEEeCCEEE
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 591 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl~~G~iv 591 (782)
+||||++++|+||||||||++||++++..+.+.|+++. .++|+|+|||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999875 379999999999999999999999999986
No 147
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-44 Score=373.62 Aligned_cols=216 Identities=27% Similarity=0.503 Sum_probs=181.1
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC------CcCHHHH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK------SLQLKWL 450 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~------~~~~~~l 450 (782)
|+++||+++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+
T Consensus 3 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 7899999999743 4999999999999999999999999999999999999999999999999873 2345678
Q ss_pred HhHceEEeccCCCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 451 REQMGLVSQEPALFAT-SIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 451 R~~i~~V~Q~~~lf~~-Ti~eNi~~g~~---~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
|++|+|++|++.+|.. |++|||.++.. ....++..+ .+.+++..+ |++........+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHH
Confidence 8999999999999975 99999975311 112222111 123333333 444445555679999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
||++++|++|||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 99999999999999999999999999999999875 48999999999999865 99999999999999999988754
No 148
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.9e-44 Score=373.91 Aligned_cols=217 Identities=31% Similarity=0.554 Sum_probs=183.9
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCc--CHHHHHhHc
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL--QLKWLREQM 454 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~--~~~~lR~~i 454 (782)
|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +..++|+.+
T Consensus 2 l~~~~l~~~~~~~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 6899999999742 499999999999999999999999999999999999999999999999999864 346788899
Q ss_pred eEEeccCCCcc-ccHHHHHhcCCC---CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 455 GLVSQEPALFA-TSIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 455 ~~V~Q~~~lf~-~Ti~eNi~~g~~---~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
+|++|++.+|. .|++||+.++.. ..+.++..+ .+.+.+..+ |++.........||||||||++||||++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence 99999999886 599999988631 122222211 112333333 4444455566799999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
++|+++||||||++||++++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999998875 48999999999999865 999999999999999999998754
No 149
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.1e-43 Score=374.17 Aligned_cols=217 Identities=30% Similarity=0.534 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC--------HH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ--------LK 448 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~--------~~ 448 (782)
|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..
T Consensus 4 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 8899999999743 4999999999999999999999999999999999999999999999999987542 35
Q ss_pred HHHhHceEEeccCCCcc-ccHHHHHhcCCC---CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 449 WLREQMGLVSQEPALFA-TSIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~-~Ti~eNi~~g~~---~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
.+|++++||+|++.+|. .|++||+.++.. ....++..+. +.+.+..+ |++........+||||||||++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHHH
Confidence 67889999999999986 699999987521 1122222211 12333333 4444445667899999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999875 48999999999999865 999999999999999999998754
No 150
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4.8e-44 Score=366.45 Aligned_cols=203 Identities=25% Similarity=0.473 Sum_probs=178.5
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+++|+++ ++|+|+||++++|+.++|+||||||||||+++|.|+++|++|+|.++|.++.+. ..+|++++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGKK--RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECCe--EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 5789999999643 499999999999999999999999999999999999999999999999998765 567889999
Q ss_pred EeccCCCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 457 VSQEPALFA-TSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 457 V~Q~~~lf~-~Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
|+|++.+|. .|++||+.++.. ..+++++.++++..++.+... .....||||||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998885 699999987632 234566777777777665543 334689999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEec
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G 594 (782)
++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998875 48999999999999865 9999999999999875
No 151
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-44 Score=378.32 Aligned_cols=217 Identities=29% Similarity=0.503 Sum_probs=184.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCCcC--HHH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSLQ--LKW 449 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~~~~--~~~ 449 (782)
-+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++.+.+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 468999999974 349999999999999999999999999999999999986 47999999999987653 346
Q ss_pred HHhHceEEeccCCCccccHHHHHhcCCC--CC--C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 450 LREQMGLVSQEPALFATSIANNILLGKE--DA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~--~~--~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
+|+.++||+|++.+|.+|++||+.++.. +. . ++++.++++..++.+++ .+.++..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHH
Confidence 7899999999999999999999987621 11 1 22344445554443322 23445667899999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++++|+||||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999998778999999999999865 9999999999999999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
..
T Consensus 237 ~~ 238 (251)
T PRK14244 237 KN 238 (251)
T ss_pred cC
Confidence 54
No 152
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-44 Score=368.80 Aligned_cols=209 Identities=26% Similarity=0.466 Sum_probs=179.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++ .+|+|+||++++||++||+||||||||||+++|.|+++|++|+|.++|.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECCE--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 5789999999743 499999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred EeccCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALFAT-SIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~--~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
++|++.+|.. |++||+.++.. ..+ ++++.++++..++.++... ...+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999999875 99999987421 111 2345556666665544432 2358999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL 599 (782)
+.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999988753 7899999999999865 899999999999999998775
No 153
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-44 Score=373.29 Aligned_cols=218 Identities=25% Similarity=0.410 Sum_probs=182.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH-HHHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK-WLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~-~lR~~i 454 (782)
-|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++.. .+|+.+
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGKI--QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCCc--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 48999999999743 499999999999999999999999999999999999999999999999999888765 467889
Q ss_pred eEEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 455 GLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
+||+|++.+|.+ |++||+.++....+.++..+.+ .+.+..++...+ ........||||||||++||||++++|
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999999985 9999999864322222222221 112222211111 223456789999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhh
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999999875 589999999999976 5589999999999999999999974
No 154
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-43 Score=378.60 Aligned_cols=214 Identities=29% Similarity=0.542 Sum_probs=184.3
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC-HHHHHhHce
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWLREQMG 455 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~-~~~lR~~i~ 455 (782)
|+++||+++|+++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.|+
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 6899999999632 24999999999999999999999999999999999999999999999999998775 467888999
Q ss_pred EEeccCC--CccccHHHHHhcCCCC--CCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 456 LVSQEPA--LFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 456 ~V~Q~~~--lf~~Ti~eNi~~g~~~--~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
||+|+|. +++.|++|||.++... .+. +++.++++..++.++ .......||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHHHH
Confidence 9999985 5678999999986422 222 233444444444433 34445689999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|++.+|+||||||||++||+.++..+.+.|+++. +|+|+|++||+++.++.||+|++|++|++++.|+.+++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998875 48999999999999988999999999999999999998653
No 155
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-44 Score=376.97 Aligned_cols=220 Identities=26% Similarity=0.465 Sum_probs=189.2
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++ .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+++..++++.++|
T Consensus 3 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECCE--EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 7899999999743 49999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EeccCCCccc-cHHHHHhcCCCC----------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHH
Q 003976 457 VSQEPALFAT-SIANNILLGKED----------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~~----------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiai 525 (782)
|+|++.+|.+ |++||+.++... ...+++.++++..++.++. ......||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-----------DRRLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-----------cCCcccCCHHHHHHHHH
Confidence 9999998876 999999986311 1123345555555554333 33456899999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
|||++++|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~- 228 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP- 228 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH-
Confidence 999999999999999999999999999999998875 4899999999999986 4899999999999999999998753
Q ss_pred chhHHHH
Q 003976 604 GEYAALV 610 (782)
Q Consensus 604 ~~y~~l~ 610 (782)
..+.+.+
T Consensus 229 ~~~~~~~ 235 (255)
T PRK11231 229 GLLRTVF 235 (255)
T ss_pred HHHHHHh
Confidence 3444444
No 156
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5e-44 Score=357.52 Aligned_cols=178 Identities=35% Similarity=0.658 Sum_probs=167.3
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++..+ ...+|+.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999976433599999999999999999999999999999999999999999999999998776 6678999999
Q ss_pred EeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceE
Q 003976 457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 536 (782)
Q Consensus 457 V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~il 536 (782)
|+|+|.+|+.|++||+ ..+||||||||++||||++++|++|
T Consensus 80 ~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 80 LNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998 5689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEec
Q 003976 537 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 537 lLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G 594 (782)
||||||++||+.+++.+.+.|+++.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999887789999999999999999999999999998865
No 157
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-44 Score=375.21 Aligned_cols=218 Identities=31% Similarity=0.521 Sum_probs=187.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC-----ccEEEECCeeCCC--cCHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDLKS--LQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~-----~G~I~i~g~di~~--~~~~ 448 (782)
.|+++||+|+|+++ .+|+|+||+|++|++++|+||||||||||+++|.|+++|+ +|+|.++|.++.+ .+..
T Consensus 4 ~l~~~~l~~~~~~~--~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHKH--QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECCe--eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 58999999999743 4999999999999999999999999999999999999997 6999999999865 3456
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCC--C-CH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKED--A-SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~--~-~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|+.++||+|+|.+|+.|++||+.++... . .. +.+.++++..++.+++ .+.....+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHHH
Confidence 789999999999999999999999986421 1 11 2233344444443332 33456778899999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999999876 7999999999999999999986
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
..
T Consensus 235 ~~ 236 (251)
T PRK14249 235 SR 236 (251)
T ss_pred hC
Confidence 54
No 158
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-44 Score=378.94 Aligned_cols=218 Identities=28% Similarity=0.466 Sum_probs=185.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--cCHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~~--~~~~ 448 (782)
-|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 4999999999974 349999999999999999999999999999999999875 799999999999865 3455
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCCC---C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~---~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|+.|+|++|++.+|++|++||+.++.... . ++.+.++++..++.+.+ .........+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHHH
Confidence 7888999999999999999999999763211 1 12344444444432221 22345667799999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999877899999999999875 59999999999999999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
..
T Consensus 252 ~~ 253 (268)
T PRK14248 252 TS 253 (268)
T ss_pred hC
Confidence 54
No 159
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-44 Score=375.55 Aligned_cols=220 Identities=28% Similarity=0.482 Sum_probs=187.3
Q ss_pred cCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC--C---CccEEEECCeeCCCc--C
Q 003976 374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--P---TSGKILLDGHDLKSL--Q 446 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~--~---~~G~I~i~g~di~~~--~ 446 (782)
++.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++ | ++|+|.++|.++... +
T Consensus 2 ~~~l~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGKN--HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCCe--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 3569999999999743 49999999999999999999999999999999999986 4 689999999998753 4
Q ss_pred HHHHHhHceEEeccCCCcc-ccHHHHHhcCCCC---CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHH
Q 003976 447 LKWLREQMGLVSQEPALFA-TSIANNILLGKED---AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 518 (782)
Q Consensus 447 ~~~lR~~i~~V~Q~~~lf~-~Ti~eNi~~g~~~---~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgG 518 (782)
...+|+.|+||+|++.+|. .|++||+.++... .+ ++++.++++..++.+++. ........+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHH
Confidence 5678999999999999998 5999999875211 11 233455555555544332 2234456789999
Q ss_pred HHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChh
Q 003976 519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHV 597 (782)
Q Consensus 519 QkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~ 597 (782)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999987899999999999985 59999999999999999999
Q ss_pred HHhhc
Q 003976 598 DLISK 602 (782)
Q Consensus 598 eL~~~ 602 (782)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 98754
No 160
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-43 Score=380.07 Aligned_cols=219 Identities=31% Similarity=0.512 Sum_probs=183.6
Q ss_pred EEEEeEEEEcCCCC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCc----CHHH
Q 003976 377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLKW 449 (782)
Q Consensus 377 i~~~~v~f~y~~~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~----~~~~ 449 (782)
|+++||+++|+++. .++|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997532 2499999999999999999999999999999999999999999999999999764 3567
Q ss_pred HHhHceEEeccC--CCccccHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHHHHHHHH
Q 003976 450 LREQMGLVSQEP--ALFATSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 450 lR~~i~~V~Q~~--~lf~~Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgGQkQRia 524 (782)
+|+.|+|++|+| .+|+.|++|||.++.. ..+.++..+.+ .+.++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 889999999998 6888999999987632 12333332221 1222222 333 2235556789999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||||++++|++|||||||++||+.+++.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999875 47999999999998854 899999999999999999998653
No 161
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5e-44 Score=367.04 Aligned_cols=201 Identities=36% Similarity=0.645 Sum_probs=172.0
Q ss_pred EEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEE
Q 003976 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 457 (782)
Q Consensus 378 ~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V 457 (782)
+++|++++|+++...+|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+|+.|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975223499999999999999999999999999999999999999999999999999988888899999999
Q ss_pred eccCC--CccccHHHHHhcCCCC--CCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 458 SQEPA--LFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 458 ~Q~~~--lf~~Ti~eNi~~g~~~--~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
+|++. +++.|++||+.++... .+. +++.+.++..++.++ ......+||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGL-----------RDRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHHHHHH
Confidence 99983 6778999999885321 122 233344444444333 3344578999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCE
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQ 589 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ 589 (782)
+++|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999875 47999999999999987 99999999985
No 162
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.6e-44 Score=367.83 Aligned_cols=203 Identities=33% Similarity=0.579 Sum_probs=173.5
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 5789999999753 499999999999999999999999999999999999999999999999999776543 468999
Q ss_pred EeccCCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALFA-TSIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf~-~Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
|+|++.+|. .|++||+.++.. ..+. +++.++++..++.++. .....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-----------DRKPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999999986 599999988632 1122 2334444444444443 344468999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEec
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G 594 (782)
+++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999875 37999999999998866 8999999999999876
No 163
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=9.8e-44 Score=366.87 Aligned_cols=210 Identities=28% Similarity=0.449 Sum_probs=188.4
Q ss_pred EEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH----HHHHhH
Q 003976 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL----KWLREQ 453 (782)
Q Consensus 378 ~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~----~~lR~~ 453 (782)
.+.|++|+|+.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 568999999854 349999999999999999999999999999999999999999999999999877653 346778
Q ss_pred ceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 454 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 454 i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
++|++|+|.+|+.|++||+.++.+ .+.++..++++..++.+++..+|.|++|.++....+||||||||++||||++++|
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999998754 3556677888888999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHH--HHHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCE
Q 003976 534 KILLLDEATSALDAESELIVQR--ALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQ 589 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~--~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~ 589 (782)
++|||||||++||+.+...+.+ .++.+. .++|+|++||+++.++.||+|++|++|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999888887 444443 3789999999999999999999999884
No 164
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=7.1e-44 Score=366.62 Aligned_cols=202 Identities=33% Similarity=0.535 Sum_probs=172.9
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH---HHHHhH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL---KWLREQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~---~~lR~~ 453 (782)
|+++|++++|+++ ..+|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999743 249999999999999999999999999999999999999999999999999987764 357889
Q ss_pred ceEEeccCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 454 MGLVSQEPALFAT-SIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 454 i~~V~Q~~~lf~~-Ti~eNi~~g~~--~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
++||+|++.+|.. |++||+.++.. ..+ ++++.++++..++.+... ....+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHH
Confidence 9999999999985 99999988632 112 233445555555544433 23458999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEE
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQV 590 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~i 590 (782)
||++++|+++||||||++||+++++.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999874 58999999999999975 899999999974
No 165
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=382.10 Aligned_cols=223 Identities=27% Similarity=0.497 Sum_probs=184.5
Q ss_pred cCcEEEEeEEEEcCCCC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC----c-
Q 003976 374 AGQIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS----L- 445 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~----~- 445 (782)
.+.|+++|++++|++++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46799999999997543 249999999999999999999999999999999999999999999999999853 2
Q ss_pred CHHHHHhHceEEeccC--CCccccHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 446 QLKWLREQMGLVSQEP--ALFATSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 446 ~~~~lR~~i~~V~Q~~--~lf~~Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
+...+|+.|+||+|+| .+|..|++|||.++.. ....++..+.+ ..+.+.+ .||+++ ......+|||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~ll~~~-~L~~~~---~~~~~~~LS~Gq~q 157 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV--PELLKLV-QLPEDY---VKRSPFELSGGQKR 157 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CCChhH---hcCChhhCCHHHHH
Confidence 4567888999999998 4788899999998642 12233322211 1122222 333332 34566789999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhH
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~e 598 (782)
|++||||++.+|++|||||||++||+.+++.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999875 3799999999999875 599999999999999999998
Q ss_pred Hhhc
Q 003976 599 LISK 602 (782)
Q Consensus 599 L~~~ 602 (782)
+...
T Consensus 238 ~~~~ 241 (289)
T PRK13645 238 IFSN 241 (289)
T ss_pred HhcC
Confidence 8653
No 166
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=377.30 Aligned_cols=219 Identities=30% Similarity=0.488 Sum_probs=187.3
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--cCH
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQL 447 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~~--~~~ 447 (782)
..|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~i~nl~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECCE--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 359999999999743 49999999999999999999999999999999999998 699999999999863 567
Q ss_pred HHHHhHceEEeccCCCccccHHHHHhcCCCC--CC---HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 448 KWLREQMGLVSQEPALFATSIANNILLGKED--AS---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 448 ~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~--~~---~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
.++|+.|+||+|++.+|..|++||+.++... .. ++++.++++.+++.+ ++++.......+||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHHH
Confidence 7889999999999999999999999986421 11 233444555544432 22334455667899999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeC-----------CEE
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKN-----------GQV 590 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~-----------G~i 590 (782)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 9999999999999999999999999999999999999877899999999999875 5999999996 679
Q ss_pred EEecChhHHhhc
Q 003976 591 VESGTHVDLISK 602 (782)
Q Consensus 591 ve~G~~~eL~~~ 602 (782)
++.|+.+++...
T Consensus 243 ~~~~~~~~~~~~ 254 (269)
T PRK14259 243 VEFNETKKIFNS 254 (269)
T ss_pred EEeCCHHHHHhC
Confidence 999999998754
No 167
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=374.28 Aligned_cols=218 Identities=26% Similarity=0.441 Sum_probs=187.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCc--CHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~~--~~~ 448 (782)
-|+++||+|+|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++... +..
T Consensus 6 ~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 48999999999743 499999999999999999999999999999999999763 489999999999876 456
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCC--C-C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKED--A-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~--~-~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
..|+.|+|++|++.+|+.|++||+.++... . . ++++.++++..++.+ ++.+..+..+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHHH
Confidence 788899999999999999999999986421 1 1 123344444444332 3334567778899999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999999999999999877899999999999986 59999999999999999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
..
T Consensus 237 ~~ 238 (253)
T PRK14261 237 EN 238 (253)
T ss_pred hC
Confidence 54
No 168
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=9.3e-44 Score=377.90 Aligned_cols=223 Identities=30% Similarity=0.430 Sum_probs=184.6
Q ss_pred EEEEeEEEEcCCC-------CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH
Q 003976 377 IEFSEVCFAYPSR-------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW 449 (782)
Q Consensus 377 i~~~~v~f~y~~~-------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~ 449 (782)
|+++||+|+|+.. ...+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 234999999999999999999999999999999999999999999999999998877543
Q ss_pred ---HHhHceEEeccCC--Cc-cccHHHHHhcCCC---CCC----HHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCC
Q 003976 450 ---LREQMGLVSQEPA--LF-ATSIANNILLGKE---DAS----MDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQL 515 (782)
Q Consensus 450 ---lR~~i~~V~Q~~~--lf-~~Ti~eNi~~g~~---~~~----~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~L 515 (782)
+|+.|+||+|+|. ++ ..|++|||.++.. ... ++++.++++.. |++ ........+|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~L 151 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMV-----------GLRSEDADKLPRQL 151 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCChhhhhCChhhC
Confidence 6788999999983 44 3699999975421 111 12233333333 343 2345567799
Q ss_pred CHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEE
Q 003976 516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVE 592 (782)
Q Consensus 516 SgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive 592 (782)
|||||||++||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998753 799999999999997 499999999999999
Q ss_pred ecChhHHhhcCc-hhHHHH
Q 003976 593 SGTHVDLISKGG-EYAALV 610 (782)
Q Consensus 593 ~G~~~eL~~~~~-~y~~l~ 610 (782)
.|+++++..... .++.+.
T Consensus 232 ~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred ECCHHHHcCCCCHHHHHHH
Confidence 999999987444 344443
No 169
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-44 Score=370.12 Aligned_cols=205 Identities=34% Similarity=0.518 Sum_probs=174.0
Q ss_pred EEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 377 i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
|+++|++++|++.. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999997421 249999999999999999999999999999999999999999999999998863 46789
Q ss_pred eEEeccCCCcc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 455 GLVSQEPALFA-TSIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 455 ~~V~Q~~~lf~-~Ti~eNi~~g~~--~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
+||+|+|.+|. .|++||+.++.. ..+ .+++.++++..++.++.. ....+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHH
Confidence 99999999998 699999987532 111 234455555555544443 334689999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-hcCEEEEEe--CCEEEEecChh
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLK--NGQVVESGTHV 597 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~-~aD~I~vl~--~G~ive~G~~~ 597 (782)
|++++|++|||||||++||+.+++.+.+.|+++. .++|+|+|||+++.+. .||+|++|+ +|+|+++++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999874 3799999999999875 599999999 79999988753
No 170
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.2e-43 Score=375.39 Aligned_cols=215 Identities=29% Similarity=0.513 Sum_probs=183.4
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCc---------
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL--------- 445 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~--------- 445 (782)
+.|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 469999999999743 499999999999999999999999999999999999999999999999998642
Q ss_pred ----CHHHHHhHceEEeccCCCccc-cHHHHHhcCCC---CCCH----HHHHHHHHHhhhHhHHhcCCCCccccc-cCCC
Q 003976 446 ----QLKWLREQMGLVSQEPALFAT-SIANNILLGKE---DASM----DRVIEAAKAANAHSFVEGLPDGYQTQV-GEGG 512 (782)
Q Consensus 446 ----~~~~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~---~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~v-ge~G 512 (782)
....+|+.++||+|++.+|.. |++||+.++.. .... +++.++++..+ +.... ....
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~ 150 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVG-----------IDERAQGKYP 150 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CChhhhhCCc
Confidence 235678899999999999975 99999987421 1122 22333333333 33332 4556
Q ss_pred CCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEE
Q 003976 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQV 590 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~i 590 (782)
..||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999999875 48999999999999986 899999999999
Q ss_pred EEecChhHHhhc
Q 003976 591 VESGTHVDLISK 602 (782)
Q Consensus 591 ve~G~~~eL~~~ 602 (782)
++.|+++++.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999998754
No 171
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=9.5e-44 Score=378.61 Aligned_cols=222 Identities=24% Similarity=0.436 Sum_probs=185.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH---HHHh
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLRE 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~---~lR~ 452 (782)
-|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++.+++.. .+|+
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGNR--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 48999999999642 499999999999999999999999999999999999999999999999999877653 4578
Q ss_pred HceEEeccCCCccc-cHHHHHhcCCC---CCCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 453 QMGLVSQEPALFAT-SIANNILLGKE---DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 453 ~i~~V~Q~~~lf~~-Ti~eNi~~g~~---~~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
+|+||+|++.+|.. |++||+.++.. ..+.+ ++.++++..++ .........+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGL-----------RGAAKLMPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHHH
Confidence 89999999999986 99999987521 11222 22233333333 22233445689999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998753 7999999999998865 89999999999999999999986
Q ss_pred cC-chhHHHH
Q 003976 602 KG-GEYAALV 610 (782)
Q Consensus 602 ~~-~~y~~l~ 610 (782)
.. ..+..++
T Consensus 234 ~~~~~~~~~~ 243 (269)
T PRK11831 234 NPDPRVRQFL 243 (269)
T ss_pred CCcHHHHHHH
Confidence 43 2344444
No 172
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-43 Score=372.02 Aligned_cols=221 Identities=24% Similarity=0.444 Sum_probs=185.5
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH-HHhHce
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQMG 455 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~-lR~~i~ 455 (782)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+... .|+.++
T Consensus 3 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDGF--KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 7899999999743 4999999999999999999999999999999999999999999999999998887664 356799
Q ss_pred EEeccCCCccc-cHHHHHhcCCCCCCH--HH---HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 456 LVSQEPALFAT-SIANNILLGKEDASM--DR---VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~~~~--~~---i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
|++|++.+|.+ |++||+.++...... .. .........+++.+..+ |++.........||||||||++||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999987 999999986421000 00 00001111223444443 455555666779999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
+++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999999999998778999999999999875 99999999999999999999864
No 173
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1e-43 Score=384.52 Aligned_cols=217 Identities=29% Similarity=0.514 Sum_probs=184.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++||
T Consensus 7 ~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 7 PIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred eEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 5999999999974 34999999999999999999999999999999999999999999999999998755 45789999
Q ss_pred EEeccCCCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 456 LVSQEPALFA-TSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 456 ~V~Q~~~lf~-~Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
||||++.+|. .|++||+.+... ..+.++..+.+ ..+.+.+ .|++..++.++ +||||||||++|||||+.+
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~~~----~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV--PPLLEFA-KLENKADAKVG----ELSGGMKRRLTLARALVND 156 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CCchHhcCchh----hCCHHHHHHHHHHHHHhCC
Confidence 9999999986 599999986322 12323222211 1222222 34555566664 7999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999885 48999999999999965 999999999999999999999764
No 174
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=372.52 Aligned_cols=218 Identities=28% Similarity=0.486 Sum_probs=187.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCC-CcCHHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLK-SLQLKW 449 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~-~~~~~~ 449 (782)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999974 3499999999999999999999999999999999999986 5999999999986 456778
Q ss_pred HHhHceEEeccCCCccccHHHHHhcCCCC--CC-H----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 450 LREQMGLVSQEPALFATSIANNILLGKED--AS-M----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~--~~-~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
+|+.++||+|++.+|..|++||+.++... .. + +++.++++..++.+.+ .+.......+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHH
Confidence 89999999999999999999999986321 11 1 2334445444544333 234455667899999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998778999999999999876 99999999999999999998864
Q ss_pred c
Q 003976 602 K 602 (782)
Q Consensus 602 ~ 602 (782)
.
T Consensus 234 ~ 234 (249)
T PRK14253 234 N 234 (249)
T ss_pred C
Confidence 3
No 175
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=8e-44 Score=366.33 Aligned_cols=201 Identities=31% Similarity=0.552 Sum_probs=173.7
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH---HHHhH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLREQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~---~lR~~ 453 (782)
|+++|++++|+++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999522 3499999999999999999999999999999999999999999999999999887643 47889
Q ss_pred ceEEeccCCCcc-ccHHHHHhcCCC------CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 454 MGLVSQEPALFA-TSIANNILLGKE------DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 454 i~~V~Q~~~lf~-~Ti~eNi~~g~~------~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
++|++|+|.+|. .|++||+.++.. ...++++.++++..++.++....| .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999996 599999988521 112345566666666655544333 58999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCE
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQ 589 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ 589 (782)
||++++|++|||||||++||+.++..+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999875 48999999999999876 89999999985
No 176
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-44 Score=369.22 Aligned_cols=213 Identities=32% Similarity=0.528 Sum_probs=183.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCe---eCCCcCHHHHHh
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH---DLKSLQLKWLRE 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~---di~~~~~~~lR~ 452 (782)
.|+++|++..|+.. .+++||||+|+.||.+|+.||||||||||+++|.|+..|++|.|.+||. |.+++.. -.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~--~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV--RDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccch--hhc
Confidence 47889999999754 3899999999999999999999999999999999999999999999999 6666333 346
Q ss_pred HceEEeccCCCcc-ccHHHHHhcCCC------C--CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 453 QMGLVSQEPALFA-TSIANNILLGKE------D--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 453 ~i~~V~Q~~~lf~-~Ti~eNi~~g~~------~--~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
+||+|+|+.-||. .||++||+||.+ + ....++.+.++.+++..+-+.- ..+||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ry-----------P~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY-----------PAQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcC-----------chhcChHHHHHH
Confidence 7999999999985 699999999962 1 1234455556666665554443 468999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHh
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
||||||..+|++||||||.+|||++-++.+.+-|++... |.|+++|||+.+.+ +-||||+||++|+|.+.|+++|..
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999988753 78999999999875 669999999999999999999997
Q ss_pred hcC
Q 003976 601 SKG 603 (782)
Q Consensus 601 ~~~ 603 (782)
...
T Consensus 227 ~~P 229 (345)
T COG1118 227 DHP 229 (345)
T ss_pred cCC
Confidence 653
No 177
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-43 Score=377.35 Aligned_cols=213 Identities=30% Similarity=0.468 Sum_probs=181.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC--CcCHHHHHhHc
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK--SLQLKWLREQM 454 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~--~~~~~~lR~~i 454 (782)
|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++. +.+...+|++|
T Consensus 2 l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCCc--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 6899999999743 4999999999999999999999999999999999999999999999999985 34456788999
Q ss_pred eEEeccCC--CccccHHHHHhcCCC--CCCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 455 GLVSQEPA--LFATSIANNILLGKE--DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 455 ~~V~Q~~~--lf~~Ti~eNi~~g~~--~~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
+||+|+|. +|..|+.+|+.++.. ..+.+ ++.++++..++.++. .....+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHHH
Confidence 99999985 677899999987521 12222 234444444544332 234568999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||++.+|+||||||||++||+.++..+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999875 57999999999999854 999999999999999999998754
No 178
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=374.04 Aligned_cols=218 Identities=31% Similarity=0.515 Sum_probs=186.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCc--CHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~~--~~~ 448 (782)
-|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGEK--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCCc--eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 38999999999743 499999999999999999999999999999999999984 899999999998753 345
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCC---CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKED---AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~---~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|+.++|++|++.+|..|++||+.++... .. ++++.++++..++.+.+ ++.......+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence 678899999999999999999999875311 11 22345555555554333 22345667899999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++++|+||||||||++||+.++..+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999877899999999999865 59999999999999999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
+.
T Consensus 234 ~~ 235 (250)
T PRK14262 234 ER 235 (250)
T ss_pred hC
Confidence 64
No 179
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.7e-43 Score=385.99 Aligned_cols=223 Identities=27% Similarity=0.400 Sum_probs=186.3
Q ss_pred cEEEEeEEEEcCCC-----------CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC
Q 003976 376 QIEFSEVCFAYPSR-----------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS 444 (782)
Q Consensus 376 ~i~~~~v~f~y~~~-----------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~ 444 (782)
-|+++|++++|+.+ ...+++|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999642 1249999999999999999999999999999999999999999999999999998
Q ss_pred cCHHH---HHhHceEEeccC--CCcc-ccHHHHHhcCC----CCCCHHHHH----HHHHHhhhHhHHhcCCCCccccccC
Q 003976 445 LQLKW---LREQMGLVSQEP--ALFA-TSIANNILLGK----EDASMDRVI----EAAKAANAHSFVEGLPDGYQTQVGE 510 (782)
Q Consensus 445 ~~~~~---lR~~i~~V~Q~~--~lf~-~Ti~eNi~~g~----~~~~~~~i~----~a~~~a~~~~~i~~lp~G~~t~vge 510 (782)
++.+. +|++|+||+|+| .|+. .||.|||.++. +..+.++.. ++++..++. | .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~------~----~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL------P----NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC------h----HHhcC
Confidence 87554 678899999999 4774 69999997642 123433333 333333331 1 12344
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeC
Q 003976 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKN 587 (782)
Q Consensus 511 ~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~ 587 (782)
...+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5678999999999999999999999999999999999999999999998754 7999999999999975 999999999
Q ss_pred CEEEEecChhHHhhcC-chhHH
Q 003976 588 GQVVESGTHVDLISKG-GEYAA 608 (782)
Q Consensus 588 G~ive~G~~~eL~~~~-~~y~~ 608 (782)
|+|+|.|+.+++.++. ..|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999998753 34554
No 180
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=376.60 Aligned_cols=218 Identities=30% Similarity=0.478 Sum_probs=185.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--cCHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~~--~~~~ 448 (782)
-|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+..
T Consensus 24 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 24 VFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 59999999999743 49999999999999999999999999999999999997 699999999999853 4566
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCC--CCCHH-----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKE--DASMD-----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~--~~~~~-----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|++++|++|++.+|..|++||+.++.. +.+++ .+.++++..++. +++.......+.+|||||||
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHHH
Confidence 78899999999999999999999987532 12221 122333332222 23334456677899999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998878999999999999865 9999999999999999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
..
T Consensus 255 ~~ 256 (271)
T PRK14238 255 SN 256 (271)
T ss_pred cC
Confidence 64
No 181
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=375.30 Aligned_cols=218 Identities=29% Similarity=0.457 Sum_probs=188.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCC--CcCHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLK--SLQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~--~~~~~ 448 (782)
-|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++. ..+..
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 48999999999743 49999999999999999999999999999999999986 48999999999985 34567
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCC--C---CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKED--A---SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~--~---~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
++|++|+||+|++.+|+.|++||+.++... . .++++.++++.+++.+++. ......+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 789999999999999989999999986421 1 1234555666666655543 234556779999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEe---------CCEEEEe
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLK---------NGQVVES 593 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~---------~G~ive~ 593 (782)
+||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+|++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 999999999999999999999999999999999999887899999999999875 589999998 8999999
Q ss_pred cChhHHhhc
Q 003976 594 GTHVDLISK 602 (782)
Q Consensus 594 G~~~eL~~~ 602 (782)
|+++|+.+.
T Consensus 241 ~~~~~~~~~ 249 (264)
T PRK14243 241 DRTEKIFNS 249 (264)
T ss_pred CCHHHHHhC
Confidence 999999764
No 182
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.1e-43 Score=368.35 Aligned_cols=209 Identities=29% Similarity=0.494 Sum_probs=181.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||++.|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++..++...+|+.++
T Consensus 7 ~i~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCCc--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 48999999999743 4999999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEeccCCCccccHHHHHhcCC---CC-CCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 456 LVSQEPALFATSIANNILLGK---ED-ASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 456 ~V~Q~~~lf~~Ti~eNi~~g~---~~-~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
||+|++.+|+.|++||+.++. .. ..++++.+ .++.+ |+. +.......+||||||||++||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLD---------DLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHH---------HHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 999999999999999998742 11 11222223 33333 332 3456667899999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhhcCEEEEE-eCCEEEEecChh
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVL-KNGQVVESGTHV 597 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl-~~G~ive~G~~~ 597 (782)
++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.++.||+|++| +++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999999875 378999999999999999999999 477788999986
No 183
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=376.38 Aligned_cols=222 Identities=28% Similarity=0.483 Sum_probs=187.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCcC-HHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSLQ-LKW 449 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~~~-~~~ 449 (782)
.|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAGK--TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECCE--EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 58999999999743 499999999999999999999999999999999999986 6999999999998764 457
Q ss_pred HHhHceEEeccCCCccccHHHHHhcCCC---CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 450 LREQMGLVSQEPALFATSIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~---~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
+|+.|+||+|++.+|+.|++||+.++.. ..+++++.+.+. .+.+.+ .+++.+++.......+||||||||++||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~--~~l~~~-~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ--ARLTEV-GLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHH--HHHHHc-CCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 7899999999999999999999998632 124444332221 111111 2333333455677889999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988777999999999999765 899999999999999999999765
No 184
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=371.33 Aligned_cols=217 Identities=27% Similarity=0.497 Sum_probs=185.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH-HHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~-lR~~i 454 (782)
-|+++||+++|+++ ++|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|.++...+... .|+.+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKGR--RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 38899999999743 4999999999999999999999999999999999999999999999999998887644 57889
Q ss_pred eEEeccCCCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 455 GLVSQEPALFAT-SIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~---~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
+||+|++.+|.. |++||+.++.. ..+.++.. ..+++.+..+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 999999999985 99999987632 11222211 2234455554 5555666777899999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
++|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999999999998875 4899999999998764 589999999999999999999875
No 185
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.2e-43 Score=368.44 Aligned_cols=211 Identities=35% Similarity=0.540 Sum_probs=175.5
Q ss_pred EEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH---HHHH
Q 003976 377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL---KWLR 451 (782)
Q Consensus 377 i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~---~~lR 451 (782)
|+++||+++|+++. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+. .++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997541 249999999999999999999999999999999999999999999999999988774 6788
Q ss_pred hHceEEeccC--CCc-cccHHHHHhcCCC----CCCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHHHHHHH
Q 003976 452 EQMGLVSQEP--ALF-ATSIANNILLGKE----DASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 452 ~~i~~V~Q~~--~lf-~~Ti~eNi~~g~~----~~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgGQkQRi 523 (782)
++++|++|+| .++ ..|++||+.++.. ...+++..+++ ++.+..+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 9999999999 344 4699999986421 11111111111 2233333 332 345666789999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEec
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESG 594 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G 594 (782)
+||||++.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998854 799999999999987 59999999999998765
No 186
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=372.28 Aligned_cols=218 Identities=28% Similarity=0.457 Sum_probs=187.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCc--CHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~~--~~~ 448 (782)
.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999974 2499999999999999999999999999999999999985 799999999999653 446
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCC--C-C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKED--A-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~--~-~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|+.++|++|++.+|+.|++||+.++... . + .+++.++++.+++.+.+. .........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHHH
Confidence 778999999999999999999999986321 1 1 123445555555533332 2344567799999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999998778999999999999865 9999999999999999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
..
T Consensus 235 ~~ 236 (251)
T PRK14270 235 LE 236 (251)
T ss_pred cC
Confidence 54
No 187
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-43 Score=372.84 Aligned_cols=222 Identities=24% Similarity=0.455 Sum_probs=185.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH-HhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l-R~~i 454 (782)
-|+++||+++|++ .++|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|.++...+...+ |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999974 249999999999999999999999999999999999999999999999999998876554 4569
Q ss_pred eEEeccCCCccc-cHHHHHhcCCCCCCH----------HHH--HHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 455 GLVSQEPALFAT-SIANNILLGKEDASM----------DRV--IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~----------~~i--~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
+||+|+|.+|.. |++||+.++...... ..+ ........+.++++.+ |++........+|||||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHHH
Confidence 999999999986 999999986321000 000 0000111223444444 5666667778899999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhH
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~e 598 (782)
|++||||++.+|++|||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 99999999999999999999999999999999999998753 7899999999999865 99999999999999999998
Q ss_pred Hhh
Q 003976 599 LIS 601 (782)
Q Consensus 599 L~~ 601 (782)
+..
T Consensus 241 ~~~ 243 (255)
T PRK11300 241 IRN 243 (255)
T ss_pred Hhh
Confidence 864
No 188
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-43 Score=372.24 Aligned_cols=204 Identities=31% Similarity=0.459 Sum_probs=177.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++. .+|+.++
T Consensus 12 ~l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 59999999999743 4999999999999999999999999999999999999999999999998763 4678899
Q ss_pred EEeccCCCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc
Q 003976 456 LVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534 (782)
Q Consensus 456 ~V~Q~~~lf~-~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ 534 (782)
||+|++.+|. .|++||+.++.....++++.++++..++.++. .....+||||||||++||||++++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999997 59999999874322344556666665554433 44457899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChh
Q 003976 535 ILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHV 597 (782)
Q Consensus 535 illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~ 597 (782)
+|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998874 3799999999999875 59999999999999988765
No 189
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=373.30 Aligned_cols=219 Identities=32% Similarity=0.491 Sum_probs=188.4
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--cCH
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQL 447 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~--~~~ 447 (782)
+.|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 36999999999964 2499999999999999999999999999999999999985 48999999999864 456
Q ss_pred HHHHhHceEEeccCCCccccHHHHHhcCCC------CCC-HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 448 KWLREQMGLVSQEPALFATSIANNILLGKE------DAS-MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 448 ~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~------~~~-~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
..+|+.|+||+|++.+|+.|++||+.++.. +.+ ++.+.++++.+++.+++.. .....+..||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 778899999999999999999999987531 111 2335566666666554432 23456679999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEe-----CCEEEEec
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLK-----NGQVVESG 594 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~-----~G~ive~G 594 (782)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999998778999999999999865 89999998 59999999
Q ss_pred ChhHHhhc
Q 003976 595 THVDLISK 602 (782)
Q Consensus 595 ~~~eL~~~ 602 (782)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (259)
T PRK14260 237 VTTQIFSN 244 (259)
T ss_pred CHHHHhcC
Confidence 99998654
No 190
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1e-43 Score=365.39 Aligned_cols=198 Identities=33% Similarity=0.558 Sum_probs=168.5
Q ss_pred EEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEE
Q 003976 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 457 (782)
Q Consensus 378 ~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V 457 (782)
+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++. .+|++++||
T Consensus 1 ~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECCE--EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 368999999742 4999999999999999999999999999999999999999999999998764 468899999
Q ss_pred eccCCC---ccccHHHHHhcCCCCC----------CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 458 SQEPAL---FATSIANNILLGKEDA----------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 458 ~Q~~~l---f~~Ti~eNi~~g~~~~----------~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
+|++.+ |+.|++||+.++.... ..+++.++++..++.++.. ....+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHH
Confidence 999986 5689999999864311 1234555555555554443 234589999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEec
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G 594 (782)
||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999875 67999999999999865 8999999986 56554
No 191
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.9e-43 Score=372.27 Aligned_cols=212 Identities=26% Similarity=0.476 Sum_probs=183.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|+.++|
T Consensus 2 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGR--LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 7899999999743 49999999999999999999999999999999999999999999999999999988888889999
Q ss_pred EeccCCC-ccccHHHHHhcCCCCC----------CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHH
Q 003976 457 VSQEPAL-FATSIANNILLGKEDA----------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 457 V~Q~~~l-f~~Ti~eNi~~g~~~~----------~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiai 525 (782)
++|++.+ +..|++||+.++.... ..+++.++++..++.+. .......||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHH
Confidence 9999964 5679999998863210 11234444444444332 334556899999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
|||++.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999999875 4789999999999994 599999999999999999999865
No 192
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-43 Score=361.69 Aligned_cols=201 Identities=28% Similarity=0.534 Sum_probs=175.2
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++. .|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+. .|+.++|
T Consensus 1 i~~~~l~~~~~~~~----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQP----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCEe----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 57899999997421 39999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EeccCCCccc-cHHHHHhcCCC-C-----CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALFAT-SIANNILLGKE-D-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~-~-----~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
++|++.+|.+ |++||+.++.. . .+++++.++++..++.+.....| .+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999976 99999987642 1 12345667777777766655544 47999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEec
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G 594 (782)
+++|++|||||||++||+++++.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999875 37999999999999866 9999999999998765
No 193
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2e-43 Score=351.63 Aligned_cols=172 Identities=44% Similarity=0.748 Sum_probs=163.1
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|++...++++|+||++++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+++.+.+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997533359999999999999999999999999999999999999999999999999999999899999999
Q ss_pred EeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceE
Q 003976 457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 536 (782)
Q Consensus 457 V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~il 536 (782)
|+|++.+|+.|++||+ ||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 81 LPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred ECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCEE
Q 003976 537 LLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQV 590 (782)
Q Consensus 537 lLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~i 590 (782)
||||||++||+.+++.+.+.|+++. +++|+|++||+++.++.||+|++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999998875 48899999999999999999999999975
No 194
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-43 Score=370.77 Aligned_cols=212 Identities=28% Similarity=0.479 Sum_probs=184.5
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+++...+++.++|
T Consensus 3 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 7899999999753 49999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EeccCCC-ccccHHHHHhcCCCCC------CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPAL-FATSIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~l-f~~Ti~eNi~~g~~~~------~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
++|++.+ +..|++||+.++.... .++++.++++..++.++ ......+||||||||++||||+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHH
Confidence 9999987 5679999998864211 12234445555444433 3334568999999999999999
Q ss_pred c------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 003976 530 L------RNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 530 ~------~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
+ .+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999999875 4799999999999886 59999999999999999999987
Q ss_pred h
Q 003976 601 S 601 (782)
Q Consensus 601 ~ 601 (782)
.
T Consensus 230 ~ 230 (258)
T PRK13548 230 T 230 (258)
T ss_pred C
Confidence 5
No 195
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-43 Score=368.61 Aligned_cols=211 Identities=34% Similarity=0.560 Sum_probs=184.4
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++ .+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|+++.+.+.. ++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceEE
Confidence 5789999999753 499999999999999999999999999999999999999999999999999876643 678999
Q ss_pred EeccCCCccc-cHHHHHhcCCC------CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALFAT-SIANNILLGKE------DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~------~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
|+|++.+|.+ |++||+.++.. ...++++.++++..++.+++...| ..||||||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999975 99999987531 112345556666666666555444 58999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
+++|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999999998764 8999999999999865 899999999999999999988754
No 196
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-43 Score=377.03 Aligned_cols=220 Identities=30% Similarity=0.529 Sum_probs=183.0
Q ss_pred cEEEEeEEEEcCCCC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCc----CHH
Q 003976 376 QIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~----~~~ 448 (782)
.|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 2499999999999999999999999999999999999999999999999998753 356
Q ss_pred HHHhHceEEeccC--CCccccHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccc-cccCCCCCCCHHHHHHH
Q 003976 449 WLREQMGLVSQEP--ALFATSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 449 ~lR~~i~~V~Q~~--~lf~~Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t-~vge~G~~LSgGQkQRi 523 (782)
..|+.|+||+|+| .+|..|++|||.++.. ..+.++..+. +.+.+..+ |+++ .......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 7788999999998 5888899999987642 1222322211 12223222 4432 33455678999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 5899999999999875 599999999999999999999865
Q ss_pred c
Q 003976 602 K 602 (782)
Q Consensus 602 ~ 602 (782)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
No 197
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3.6e-43 Score=365.04 Aligned_cols=207 Identities=29% Similarity=0.387 Sum_probs=177.3
Q ss_pred cEEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH---H
Q 003976 376 QIEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---L 450 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~---l 450 (782)
-|+++||+++|+++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999997532 24999999999999999999999999999999999999999999999999998887653 3
Q ss_pred -HhHceEEeccCCCccc-cHHHHHhcCCC--CC----CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 451 -REQMGLVSQEPALFAT-SIANNILLGKE--DA----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 451 -R~~i~~V~Q~~~lf~~-Ti~eNi~~g~~--~~----~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
++.++|++|++.+|.. |++||+.++.. .. ..+++.++++..++.+++... ...||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHH
Confidence 3679999999999885 99999987421 11 123455566666655554433 35899999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhhcCEEEEEeCCEEEEe
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 593 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~ 593 (782)
++||||++++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+..||+|++|++|+++++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999874 37899999999999989999999999999874
No 198
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-43 Score=373.10 Aligned_cols=213 Identities=26% Similarity=0.447 Sum_probs=186.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+++|+++ .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+
T Consensus 7 ~l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 7 RLRGEQLTLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred EEEEEEEEEEECCE--EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 59999999999743 4999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeccCCCcc-ccHHHHHhcCC-CC---------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 456 LVSQEPALFA-TSIANNILLGK-ED---------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 456 ~V~Q~~~lf~-~Ti~eNi~~g~-~~---------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
||+|++.+|. .|++||+.++. +. ..++++.++++..++.++. .....+||||||||++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv~ 153 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----------DQSVDTLSGGQRQRAW 153 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCChHHHHHHH
Confidence 9999998875 59999998763 11 1123455556555554443 3445789999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999999999998753 7899999999998755 99999999999999999999875
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-43 Score=391.82 Aligned_cols=199 Identities=33% Similarity=0.570 Sum_probs=174.3
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH----HhHceEEeccCCCccc-c
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL----REQMGLVSQEPALFAT-S 467 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l----R~~i~~V~Q~~~lf~~-T 467 (782)
+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+++...+ |++|+||+|++.+|.. |
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999998887654 3579999999999974 9
Q ss_pred HHHHHhcCCC--CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCC
Q 003976 468 IANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 541 (782)
Q Consensus 468 i~eNi~~g~~--~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~ 541 (782)
++|||.++.. ..+ ++++.++++..++.++..+. ..+||||||||++|||||+.+|+|||||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~-----------~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY-----------PDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC-----------cccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999998632 112 23455566666665555443 358999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 003976 542 TSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 542 tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||+||+.+++.+++.|.++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++...
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999874 4899999999999875 5999999999999999999999875
No 200
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.9e-43 Score=381.10 Aligned_cols=217 Identities=28% Similarity=0.504 Sum_probs=181.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||+++|++. .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|++||
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCCe--EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 48999999999742 499999999999999999999999999999999999999999999999998764 356789999
Q ss_pred EEeccCCCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 456 LVSQEPALFA-TSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 456 ~V~Q~~~lf~-~Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
||+|++.+|. .|++||+.+... ..+.++..+.++ .+.+.+ .|++..++.+ .+||||||||++||||++.+
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~~-~l~~~~~~~~----~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEFA-RLESKADVRV----ALLSGGMKRRLTLARALIND 153 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHC-CChhHhcCch----hhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 599999985321 123333322221 122222 3444444444 57999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999874 58999999999999865 999999999999999999998754
No 201
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-43 Score=364.53 Aligned_cols=210 Identities=30% Similarity=0.528 Sum_probs=183.9
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+++|+.. ..|+||+|++|++++|+||||||||||+++|.|+++|++|+|.+||.++...+.. ++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEEE
Confidence 7899999999742 2499999999999999999999999999999999999999999999999876543 568999
Q ss_pred EeccCCCccc-cHHHHHhcCC-CC-----CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALFAT-SIANNILLGK-ED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~-~~-----~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
|+|++.+|.+ |++||+.++. +. ..++++.++++..++.+++...| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 9999998753 11 12345777777777776665555 47999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 999999999999999999999999999998753 7899999999999865 8999999999999999999998653
No 202
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-43 Score=388.93 Aligned_cols=214 Identities=29% Similarity=0.499 Sum_probs=184.4
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++. .|+.|
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999964 249999999999999999999999999999999999999999999999999987764 47789
Q ss_pred eEEeccCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 455 GLVSQEPALFAT-SIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
|||+|++.||.. |++|||.|+.. ..+. +++.++++..++.++.. ....+||||||||+||||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-----------RKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence 999999999975 99999999743 1222 23445555555544433 334589999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
||+++|++||||||||+||+.++..+.+.|+++. .+.|+|+|||+++.+ .-||+|++|++|+|++.|+++|+..+.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999998888764 379999999999986 559999999999999999999998763
No 203
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.2e-43 Score=383.96 Aligned_cols=228 Identities=26% Similarity=0.438 Sum_probs=186.7
Q ss_pred cEEEEeEEEEcCCC--CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCcCHHHH
Q 003976 376 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSLQLKWL 450 (782)
Q Consensus 376 ~i~~~~v~f~y~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~di~~~~~~~l 450 (782)
-++++|++++|+.+ ...+|+|+||+|++||++||||+||||||||+++|+|+++|. +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 48999999999643 224999999999999999999999999999999999999996 9999999999999987766
Q ss_pred H----hHceEEeccC--CCcc-ccHHHHHhcCC---CCCCHHHHH-HHHHHhhhHhHHhcCCCCccccccCCCCCCCHHH
Q 003976 451 R----EQMGLVSQEP--ALFA-TSIANNILLGK---EDASMDRVI-EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 519 (782)
Q Consensus 451 R----~~i~~V~Q~~--~lf~-~Ti~eNi~~g~---~~~~~~~i~-~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQ 519 (782)
| +.|+||+|+| .++. .|+.+|+.... ...+.++.. ++.+. .+. ..||++. +.++....+|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~---L~~-vgL~~~~-~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRM---LDA-VKMPEAR-KRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH---HHH-cCCCChH-HHhcCCcccCCHHH
Confidence 4 4799999999 4554 47888775321 112333322 22211 222 2455544 33677888999999
Q ss_pred HHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecCh
Q 003976 520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 520 kQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~ 596 (782)
|||++|||||+.+|++||+|||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.|+.
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999998854 789999999999986 5999999999999999999
Q ss_pred hHHhhc-CchhHH
Q 003976 597 VDLISK-GGEYAA 608 (782)
Q Consensus 597 ~eL~~~-~~~y~~ 608 (782)
+++.+. ...|.+
T Consensus 247 ~~i~~~p~~pyt~ 259 (330)
T PRK09473 247 RDVFYQPSHPYSI 259 (330)
T ss_pred HHHHhCCCCHHHH
Confidence 999875 344655
No 204
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-43 Score=370.03 Aligned_cols=218 Identities=31% Similarity=0.509 Sum_probs=188.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCCc--CHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSL--QLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~~~--~~~ 448 (782)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++.+. +..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999974 349999999999999999999999999999999999874 4899999999998753 466
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKE--DA-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~--~~-~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|+.++||+|++.+|+.|++||+.++.. +. + ++++.++++.+++.+++.. .....+.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence 78999999999999999999999987632 11 1 2335566667777665532 234556799999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999998766 7999999999999999999986
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
..
T Consensus 234 ~~ 235 (250)
T PRK14266 234 IN 235 (250)
T ss_pred hC
Confidence 54
No 205
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-43 Score=375.30 Aligned_cols=219 Identities=28% Similarity=0.485 Sum_probs=186.6
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--cCH
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQL 447 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~~--~~~ 447 (782)
..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++.+ .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 35899999999974 349999999999999999999999999999999999997 689999999999864 356
Q ss_pred HHHHhHceEEeccCCCccccHHHHHhcCCCC--C---CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 448 KWLREQMGLVSQEPALFATSIANNILLGKED--A---SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 448 ~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~--~---~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
..+|+.++||+|++.+|..|++||+.++... . .++++.++++..++.+.+. .....+..+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHHH
Confidence 6788999999999999999999999875311 1 1334555555555433322 23456677999999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEE-EEeCCEEEEecChhHHh
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIM-VLKNGQVVESGTHVDLI 600 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~-vl~~G~ive~G~~~eL~ 600 (782)
++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998777899999999999865 99975 57999999999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
+.
T Consensus 269 ~~ 270 (285)
T PRK14254 269 EN 270 (285)
T ss_pred hC
Confidence 54
No 206
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.1e-43 Score=362.86 Aligned_cols=205 Identities=35% Similarity=0.558 Sum_probs=171.7
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC--cCHHHHHhHc
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWLREQM 454 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~--~~~~~lR~~i 454 (782)
|+++||+++|+++ ++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+|++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECCe--EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 5789999999753 49999999999999999999999999999999999999999999999999853 4556788999
Q ss_pred eEEeccCCCcc-ccHHHHHhcCCC---CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 455 GLVSQEPALFA-TSIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 455 ~~V~Q~~~lf~-~Ti~eNi~~g~~---~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
+||+|++.+|. .|++||+.++.. +.+.++..+. +.+.+..+ |++........+||||||||++||||++
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 99999999997 599999987632 1222222111 12233332 3444444555789999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEE
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQV 590 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~i 590 (782)
++|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|+|
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999875 47999999999999965 999999999975
No 207
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-43 Score=372.16 Aligned_cols=218 Identities=32% Similarity=0.527 Sum_probs=184.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--cCHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~--~~~~ 448 (782)
.|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 48999999999753 499999999999999999999999999999999999974 79999999999853 4566
Q ss_pred HHHhHceEEeccCCCcc-ccHHHHHhcCCCC---CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 449 WLREQMGLVSQEPALFA-TSIANNILLGKED---AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~-~Ti~eNi~~g~~~---~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
.+|+.|+||+|++.+|. .|++||+.++... .+ ++++.++++..++.+++ .........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHH
Confidence 78899999999999997 4999999875311 11 12334445555443322 2334556678999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEe------CCEEEEe
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLK------NGQVVES 593 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~------~G~ive~ 593 (782)
||++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999999999999999999877899999999999985 599999997 8999999
Q ss_pred cChhHHhhc
Q 003976 594 GTHVDLISK 602 (782)
Q Consensus 594 G~~~eL~~~ 602 (782)
|+++++...
T Consensus 235 ~~~~~~~~~ 243 (258)
T PRK14241 235 DDTEKIFSN 243 (258)
T ss_pred CCHHHHHhC
Confidence 999998754
No 208
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-43 Score=372.89 Aligned_cols=220 Identities=29% Similarity=0.454 Sum_probs=189.6
Q ss_pred cCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCC----C
Q 003976 374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLK----S 444 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~----~ 444 (782)
.+.|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|+|.++|.++. .
T Consensus 14 ~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 4679999999999743 499999999999999999999999999999999999975 7999999998874 3
Q ss_pred cCHHHHHhHceEEeccCCCccccHHHHHhcCCC--CC-----CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCH
Q 003976 445 LQLKWLREQMGLVSQEPALFATSIANNILLGKE--DA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG 517 (782)
Q Consensus 445 ~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~--~~-----~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSg 517 (782)
.+..++|+.|+|++|++.+|.+|++|||.++.. .. .++++.++++.+++.+ ++.+..+.....|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCCH
Confidence 345678899999999999999999999987631 11 1344555665555443 333455666789999
Q ss_pred HHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecCh
Q 003976 518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 518 GQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~ 596 (782)
|||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999999877899999999999986 5999999999999999999
Q ss_pred hHHhhc
Q 003976 597 VDLISK 602 (782)
Q Consensus 597 ~eL~~~ 602 (782)
+++...
T Consensus 245 ~~~~~~ 250 (265)
T PRK14252 245 DTIFIK 250 (265)
T ss_pred HHHHhC
Confidence 998753
No 209
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-43 Score=382.21 Aligned_cols=224 Identities=26% Similarity=0.419 Sum_probs=183.6
Q ss_pred EEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC----CCccEEEECCeeCCCcCHHHH
Q 003976 377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE----PTSGKILLDGHDLKSLQLKWL 450 (782)
Q Consensus 377 i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~----~~~G~I~i~g~di~~~~~~~l 450 (782)
|+++|++++|+.+. ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 79999999997533 239999999999999999999999999999999999998 489999999999999988776
Q ss_pred Hh----HceEEeccCC--Ccc-ccHHHHHh----cCCC---CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCC
Q 003976 451 RE----QMGLVSQEPA--LFA-TSIANNIL----LGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS 516 (782)
Q Consensus 451 R~----~i~~V~Q~~~--lf~-~Ti~eNi~----~g~~---~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LS 516 (782)
|+ .|+||+|+|. ++. -|+.+|+. .... ....+++.++++..++.+.. ........+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 54 6999999995 443 26655543 3211 11123455555555553321 22445677999
Q ss_pred HHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEe
Q 003976 517 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVES 593 (782)
Q Consensus 517 gGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~ 593 (782)
||||||++|||||+.+|++||+|||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998853 799999999999985 5999999999999999
Q ss_pred cChhHHhhc-CchhHH
Q 003976 594 GTHVDLISK-GGEYAA 608 (782)
Q Consensus 594 G~~~eL~~~-~~~y~~ 608 (782)
|+.+++.++ ...|.+
T Consensus 236 g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CCHHHHhhCCCChHHH
Confidence 999999876 334544
No 210
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5.1e-43 Score=362.53 Aligned_cols=204 Identities=29% Similarity=0.476 Sum_probs=173.0
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH---HHHhH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLREQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~---~lR~~ 453 (782)
|+++||+++|+.+ ..+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++.+++.. .+|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999532 3499999999999999999999999999999999999999999999999999887654 47889
Q ss_pred ceEEeccCCCc-cccHHHHHhcCCC--CCCHHH----HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 454 MGLVSQEPALF-ATSIANNILLGKE--DASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 454 i~~V~Q~~~lf-~~Ti~eNi~~g~~--~~~~~~----i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
++||+|+|.+| +.|++||+.++.. ..+.++ +.++++..++.++. .....+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHHHH
Confidence 99999999875 5699999998631 123332 33444444443333 334568999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEE
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE 592 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive 592 (782)
||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999875 47899999999999976 89999999999864
No 211
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=4.7e-43 Score=366.44 Aligned_cols=211 Identities=34% Similarity=0.526 Sum_probs=180.9
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++ .+|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .|+.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 5789999999753 49999999999999999999999999999999999999999999999999987653 4778999
Q ss_pred EeccCCCccc-cHHHHHhcCCCC--CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~~--~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
+||+|.+|.+ |++||+.++.+. .+ ++++.++++..++.++. .....+|||||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLG-----------DRYPNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 9999999976 999999886431 11 22334444444443333 333468999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
+++|+++||||||++||+++++.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999998754 7999999999998765 899999999999999999999753
No 212
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-43 Score=369.60 Aligned_cols=218 Identities=33% Similarity=0.536 Sum_probs=182.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC-----ccEEEECCeeCCC--cCHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDLKS--LQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~-----~G~I~i~g~di~~--~~~~ 448 (782)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|+ +|+|.++|.++.+ .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3789999999974 24999999999999999999999999999999999999875 8999999999875 3456
Q ss_pred HHHhHceEEeccCCCccc-cHHHHHhcCCCC--C-CHHHHHHHH----HHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 449 WLREQMGLVSQEPALFAT-SIANNILLGKED--A-SMDRVIEAA----KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~--~-~~~~i~~a~----~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
.+|+.|+|++|++.+|.. |++||+.++... . .+++..+.+ +..++.+. +++..+ ....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~----~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLK----TPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhc----CCcccCCHHHH
Confidence 788899999999999985 999999875321 1 233332222 22222222 222333 34568999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL 599 (782)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999875 899999999999999999999
Q ss_pred hhc
Q 003976 600 ISK 602 (782)
Q Consensus 600 ~~~ 602 (782)
+..
T Consensus 235 ~~~ 237 (252)
T PRK14272 235 FTN 237 (252)
T ss_pred HhC
Confidence 765
No 213
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=5.9e-43 Score=378.18 Aligned_cols=216 Identities=23% Similarity=0.445 Sum_probs=184.5
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. +...+|+.+||
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999964 349999999999999999999999999999999999999999999999999977 45678899999
Q ss_pred EeccCCCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 457 VSQEPALFAT-SIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~~--~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
+||++.+|.. |++||+.+.... .+.++..+. +++.+..+ |++........+||||||||++||||++.+|
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQR-----VEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999976 999999864311 122222111 12233333 4444445566789999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999998778999999999998866 999999999999999999998764
No 214
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-43 Score=372.92 Aligned_cols=214 Identities=32% Similarity=0.567 Sum_probs=182.1
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC--cCHHHHHhHc
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWLREQM 454 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~--~~~~~lR~~i 454 (782)
|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+|+.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 6899999999732 249999999999999999999999999999999999999999999999999852 3345788999
Q ss_pred eEEeccC--CCccccHHHHHhcCCCC--CCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 455 GLVSQEP--ALFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 455 ~~V~Q~~--~lf~~Ti~eNi~~g~~~--~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
+|++|+| .+|..|++|||.++... .+. +++.++++..++.++. .....+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHHHH
Confidence 9999998 57889999999886421 222 2344444444443322 233468999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999875 4899999999999986 5999999999999999999998753
No 215
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-43 Score=380.25 Aligned_cols=223 Identities=28% Similarity=0.463 Sum_probs=185.1
Q ss_pred cEEEEeEEEEcCCC--------CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH
Q 003976 376 QIEFSEVCFAYPSR--------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL 447 (782)
Q Consensus 376 ~i~~~~v~f~y~~~--------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~ 447 (782)
-|+++|++++|+.+ ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 38999999999742 1249999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHHhHceEEeccCC--Ccc-ccHHHHHhcCC---CCCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCC
Q 003976 448 K---WLREQMGLVSQEPA--LFA-TSIANNILLGK---EDAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514 (782)
Q Consensus 448 ~---~lR~~i~~V~Q~~~--lf~-~Ti~eNi~~g~---~~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~ 514 (782)
+ .+|++|+||+|+|. |+. -|+.+|+.... ...+ .+++.++++..++.+ ++++. ...+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcC----CCcc
Confidence 3 56789999999993 555 39999986421 1112 233455555554431 22333 3468
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEE
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVV 591 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~iv 591 (782)
||||||||++|||||+.+|++||+||||++||..+++.|.+.|+++.+ |.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 8999999999999975 9999999999999
Q ss_pred EecChhHHhhcC-chhHH
Q 003976 592 ESGTHVDLISKG-GEYAA 608 (782)
Q Consensus 592 e~G~~~eL~~~~-~~y~~ 608 (782)
|.|+.+++++.. ..|.+
T Consensus 235 e~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EECCHHHHhcCCCCHHHH
Confidence 999999998763 34554
No 216
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=5e-43 Score=367.33 Aligned_cols=212 Identities=25% Similarity=0.393 Sum_probs=175.1
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCcCHHHH-HhH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL--YEPTSGKILLDGHDLKSLQLKWL-REQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~--~~~~~G~I~i~g~di~~~~~~~l-R~~ 453 (782)
|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+ ++|++|+|.++|.++..++.... |..
T Consensus 1 l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVEDK--EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECCE--EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 5789999999742 499999999999999999999999999999999999 47999999999999998887664 455
Q ss_pred ceEEeccCCCccc-cHHHHHhcCCCC---------CCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCC-CCCHH
Q 003976 454 MGLVSQEPALFAT-SIANNILLGKED---------ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT-QLSGG 518 (782)
Q Consensus 454 i~~V~Q~~~lf~~-Ti~eNi~~g~~~---------~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~-~LSgG 518 (782)
++||+|+|.+|.+ |++||+.+.... .+. +++.++++..++ ++++ ...... .||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~---~~~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM-------DEEF---LNRSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCC-------chhh---cccccccCcCHH
Confidence 9999999999986 899999764211 111 122222322222 2111 122222 59999
Q ss_pred HHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh--cCEEEEEeCCEEEEecC
Q 003976 519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD--VDTIMVLKNGQVVESGT 595 (782)
Q Consensus 519 QkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~--aD~I~vl~~G~ive~G~ 595 (782)
||||++||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999885 47999999999999976 79999999999999999
Q ss_pred hhHHh
Q 003976 596 HVDLI 600 (782)
Q Consensus 596 ~~eL~ 600 (782)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 88653
No 217
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-43 Score=376.01 Aligned_cols=218 Identities=28% Similarity=0.469 Sum_probs=184.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCCc--CHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSL--QLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~~~--~~~ 448 (782)
.|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+.+ |++|+|.+||.++... +..
T Consensus 39 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 39 HVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred EEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 58999999999743 49999999999999999999999999999999999864 4999999999998653 334
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKE--DA-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~--~~-~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|++|+||+|++.+|+.|++|||.++.. .. + ++++.++++..++.+.+ ..........|||||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQQQ 189 (286)
T ss_pred HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHHHH
Confidence 67889999999999999999999998632 11 1 12334444444443222 12234566789999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999865 9999999999999999999987
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
..
T Consensus 270 ~~ 271 (286)
T PRK14275 270 TN 271 (286)
T ss_pred hC
Confidence 64
No 218
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-43 Score=369.95 Aligned_cols=219 Identities=30% Similarity=0.493 Sum_probs=187.5
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC-----ccEEEECCeeCCC--cCH
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDLKS--LQL 447 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~-----~G~I~i~g~di~~--~~~ 447 (782)
+.|+++||+++|+++ .+|+|+||++++|++++|+|+||||||||+++|.|+++|+ +|+|.++|.++.. .+.
T Consensus 6 ~~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 469999999999643 4999999999999999999999999999999999999985 8999999999853 355
Q ss_pred HHHHhHceEEeccCCCccccHHHHHhcCCCC--C-C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 448 KWLREQMGLVSQEPALFATSIANNILLGKED--A-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 448 ~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~--~-~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
..+|+.++|++|++.+|..|++||+.++... . + ++++.++++..++.+++. ...+....+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 6788999999999999999999999875211 1 1 233455565665544443 234566779999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeC-----CEEEE
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKN-----GQVVE 592 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~-----G~ive 592 (782)
||++||||++++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999864 48999999999999864 899999999 99999
Q ss_pred ecChhHHhhc
Q 003976 593 SGTHVDLISK 602 (782)
Q Consensus 593 ~G~~~eL~~~ 602 (782)
.|+++++...
T Consensus 237 ~~~~~~~~~~ 246 (261)
T PRK14258 237 FGLTKKIFNS 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999999764
No 219
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-43 Score=369.58 Aligned_cols=218 Identities=29% Similarity=0.439 Sum_probs=189.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCc--CHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~~--~~~ 448 (782)
-+.+++++++|.. ..+|+|+||++++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++.+. +..
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999964 3499999999999999999999999999999999999987 799999999998653 445
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCC-----CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~-----~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
.+|+.|+||+|++.+|+.|++|||.++... ...+++.++++.+++.+.+.. ..++...+||||||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 678899999999999999999999987421 123456777777776555432 33466779999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEe--------CCEEEEec
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLK--------NGQVVESG 594 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~--------~G~ive~G 594 (782)
+||||++++|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 999999999999999999999999999999999999877899999999999875 489999996 89999999
Q ss_pred ChhHHhhc
Q 003976 595 THVDLISK 602 (782)
Q Consensus 595 ~~~eL~~~ 602 (782)
+++++++.
T Consensus 239 ~~~~~~~~ 246 (261)
T PRK14263 239 PTAQIFQN 246 (261)
T ss_pred CHHHHHhC
Confidence 99999864
No 220
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.2e-42 Score=369.84 Aligned_cols=226 Identities=26% Similarity=0.434 Sum_probs=187.7
Q ss_pred cEEEEeEEEEcCCC-------CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH
Q 003976 376 QIEFSEVCFAYPSR-------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~-------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~ 448 (782)
-|+++||+++|+.+ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999632 12499999999999999999999999999999999999999999999999999866666
Q ss_pred HHHhHceEEeccCC--Cccc-cHHHHHhcCCC---CCC----HHHHHHHHHHhhhH-hHHhcCCCCccccccCCCCCCCH
Q 003976 449 WLREQMGLVSQEPA--LFAT-SIANNILLGKE---DAS----MDRVIEAAKAANAH-SFVEGLPDGYQTQVGEGGTQLSG 517 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~--lf~~-Ti~eNi~~g~~---~~~----~~~i~~a~~~a~~~-~~i~~lp~G~~t~vge~G~~LSg 517 (782)
..|+.|+||+|++. ++.. |+.+|+.++.. ... ++++.++++..++. +.. + ....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-------S----YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-------h----cCchhcCH
Confidence 77788999999985 4443 89999875321 111 23455566665552 222 2 23358999
Q ss_pred HHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEec
Q 003976 518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594 (782)
Q Consensus 518 GQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G 594 (782)
|||||++||||++++|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 37899999999999986 8999999999999999
Q ss_pred ChhHHhhcC--chhHHHHHh
Q 003976 595 THVDLISKG--GEYAALVNL 612 (782)
Q Consensus 595 ~~~eL~~~~--~~y~~l~~~ 612 (782)
+++++.... ..+++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 233 STADVLASPLHELTKRLIAG 252 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHh
Confidence 999998753 445666643
No 221
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=368.10 Aligned_cols=222 Identities=27% Similarity=0.454 Sum_probs=184.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCc-----CH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSL-----QL 447 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~di~~~-----~~ 447 (782)
-|+++||+++|+++ .+|+|+||++++||+++|+||||||||||+++|.|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCCe--EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 48999999999743 4999999999999999999999999999999999999986 49999999998654 34
Q ss_pred HHHHhHceEEeccCCCccc-cHHHHHhcCCCCC--------------CHHHHHHHHHHhhhHhHHhcCCCCccccccCCC
Q 003976 448 KWLREQMGLVSQEPALFAT-SIANNILLGKEDA--------------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512 (782)
Q Consensus 448 ~~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~~--------------~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G 512 (782)
..+|++++|++|++.+|.. |++||+.++..+. ..+++.++++..++.+. .....
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF-----------AHQRV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH-----------HhCCc
Confidence 5678899999999998884 9999999864211 12234444444444333 33455
Q ss_pred CCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchh-hhcCEEEEEeCCE
Q 003976 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQ 589 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i-~~aD~I~vl~~G~ 589 (782)
.+||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999999885 379999999999986 5599999999999
Q ss_pred EEEecChhHHhhcCchhHHHHHh
Q 003976 590 VVESGTHVDLISKGGEYAALVNL 612 (782)
Q Consensus 590 ive~G~~~eL~~~~~~y~~l~~~ 612 (782)
+++.|+++++ . .....+++..
T Consensus 231 i~~~g~~~~~-~-~~~~~~~~~~ 251 (262)
T PRK09984 231 VFYDGSSQQF-D-NERFDHLYRS 251 (262)
T ss_pred EEEeCCHHHh-c-cHHHHHHHhh
Confidence 9999999997 2 2344555543
No 222
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-43 Score=359.63 Aligned_cols=205 Identities=25% Similarity=0.517 Sum_probs=171.7
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|+++.|++ .++|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.+||.++.. .+|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999974 249999999999999999999999999999999999999999999999998753 56789999
Q ss_pred EeccCCCccc-cHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 457 VSQEPALFAT-SIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
++|++.+|.+ |++||+.++.. ..+..+..+ .+.+++..+ |++........+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARR-----RIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999975 99999987532 111111111 122333333 3444445566789999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEec
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G 594 (782)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999998875 47899999999998865 9999999999998765
No 223
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=6.5e-43 Score=385.76 Aligned_cols=206 Identities=28% Similarity=0.462 Sum_probs=175.5
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCe----eCCCcCHHHHH----hHceEEeccCCC
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH----DLKSLQLKWLR----EQMGLVSQEPAL 463 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~----di~~~~~~~lR----~~i~~V~Q~~~l 463 (782)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. ++.+++.+.+| ++|+||+|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 3899999999999999999999999999999999999999999999996 67777766553 579999999999
Q ss_pred cc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceE
Q 003976 464 FA-TSIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 536 (782)
Q Consensus 464 f~-~Ti~eNi~~g~~--~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~il 536 (782)
|+ .|++||+.++.. ..+ .+++.++++..++.++... ...+||||||||++|||||+++|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98 699999998742 112 2344555666555544433 33579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhhc-CchhHH
Q 003976 537 LLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISK-GGEYAA 608 (782)
Q Consensus 537 lLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~~-~~~y~~ 608 (782)
|||||||+||+.+++.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++|++.+ ...|.+
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 99999999999999999999998754 79999999999987 56999999999999999999999865 344443
No 224
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-43 Score=368.07 Aligned_cols=218 Identities=29% Similarity=0.474 Sum_probs=184.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC--C---CccEEEECCeeCCC--cCHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--P---TSGKILLDGHDLKS--LQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~--~---~~G~I~i~g~di~~--~~~~ 448 (782)
-|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++ | ++|+|.++|.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999974 349999999999999999999999999999999999975 5 59999999999864 3455
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKE--DA-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~--~~-~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|+.++||+|++.+|+.|+++|+.++.. .. . ++++.++++.+++.+.+ .........+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHHH
Confidence 67889999999999999999999987531 11 1 12334444444443222 23345566799999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+..++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999998777899999999999864 9999999999999999998887
Q ss_pred hc
Q 003976 601 SK 602 (782)
Q Consensus 601 ~~ 602 (782)
..
T Consensus 236 ~~ 237 (252)
T PRK14255 236 LN 237 (252)
T ss_pred cC
Confidence 54
No 225
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=9.7e-43 Score=381.16 Aligned_cols=217 Identities=28% Similarity=0.509 Sum_probs=183.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||+++|++. .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...|+.||
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 49999999999743 4999999999999999999999999999999999999999999999999998654 56788999
Q ss_pred EEeccCCCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 456 LVSQEPALFA-TSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 456 ~V~Q~~~lf~-~Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
||||++.+|. .|++||+.+... ..+.++..+.++ .+.++ ..|++..++.+ .+||||||||++|||||+.+
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~-~~L~~~~~~~~----~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEF-ARLESKADARV----SDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHH-cCCchhhCCCh----hhCCHHHHHHHHHHHHHhcC
Confidence 9999999875 599999986321 122232222221 12222 24555566665 47999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|+|++.|+.+++...
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999875 48999999999999865 999999999999999999999754
No 226
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=368.04 Aligned_cols=226 Identities=29% Similarity=0.480 Sum_probs=188.7
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEEC------CeeCCCcCHH
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLD------GHDLKSLQLK 448 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~------g~di~~~~~~ 448 (782)
..|+++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++ |+++.+++..
T Consensus 9 ~~i~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 359999999999753 49999999999999999999999999999999999999999666655 4677777888
Q ss_pred HHHhHceEEeccCCCccc-cHHHHHhcCCC--CC-CHHH----HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 449 WLREQMGLVSQEPALFAT-SIANNILLGKE--DA-SMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~--~~-~~~~----i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
.+|++++|++|+|.+|.+ |++||+.++.. .. ++++ +.++++..++++++ +......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 899999999999999976 99999997632 11 2222 34444554543332 1223456778999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHH
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL 599 (782)
||++||||++++|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+ +.||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999887789999999999998 56999999999999999999999
Q ss_pred hhcC-chhHHH
Q 003976 600 ISKG-GEYAAL 609 (782)
Q Consensus 600 ~~~~-~~y~~l 609 (782)
.+.. ..|.+.
T Consensus 240 ~~~~~~~~~~~ 250 (257)
T PRK14246 240 FTSPKNELTEK 250 (257)
T ss_pred HhCCCcHHHHH
Confidence 8653 234443
No 227
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=375.40 Aligned_cols=219 Identities=28% Similarity=0.476 Sum_probs=187.6
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCCc--CH
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSL--QL 447 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~di~~~--~~ 447 (782)
..|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 44 ~~l~i~nl~~~~~~~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 44 AKLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred ceEEEEEEEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 359999999999753 49999999999999999999999999999999999986 6899999999998653 46
Q ss_pred HHHHhHceEEeccCCCccccHHHHHhcCCCCC-------------------CHHHHHHHHHHhhhHhHHhcCCCCccccc
Q 003976 448 KWLREQMGLVSQEPALFATSIANNILLGKEDA-------------------SMDRVIEAAKAANAHSFVEGLPDGYQTQV 508 (782)
Q Consensus 448 ~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~-------------------~~~~i~~a~~~a~~~~~i~~lp~G~~t~v 508 (782)
..+|+.|+||+|++.+|+.|++||+.++.... .++++.++++.++ +++++++..
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA-------LWDEVNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcC-------CchhhhHHh
Confidence 67889999999999999999999999863210 1122333444333 344455666
Q ss_pred cCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEE-EEEe
Q 003976 509 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTI-MVLK 586 (782)
Q Consensus 509 ge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I-~vl~ 586 (782)
.....+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+| ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 7788899999999999999999999999999999999999999999999998778999999999999865 9997 5789
Q ss_pred CCEEEEecChhHHhhc
Q 003976 587 NGQVVESGTHVDLISK 602 (782)
Q Consensus 587 ~G~ive~G~~~eL~~~ 602 (782)
+|++++.|+++++.+.
T Consensus 275 ~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 275 GGELVEYDDTDKIFEN 290 (305)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999999998754
No 228
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=383.23 Aligned_cols=211 Identities=27% Similarity=0.424 Sum_probs=183.9
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCc----CHHHHHh
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLKWLRE 452 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~----~~~~lR~ 452 (782)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....|+
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999642 33 89999999999999999999999999999999999999999999998753 2455688
Q ss_pred HceEEeccCCCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 453 QMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 453 ~i~~V~Q~~~lf~-~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
+|+||+|++.+|. .|++|||.++.+....+++.++++..++.++..+ ...+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDR-----------YPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHHHHHc
Confidence 9999999999997 5999999998654445667777777666555444 346899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999998754 7899999999998755 9999999999999999999998763
No 229
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.7e-42 Score=356.46 Aligned_cols=202 Identities=33% Similarity=0.552 Sum_probs=176.4
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
++++||+++|+. .++|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||+++.+.+ .+|+.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 568999999999999999999999999999999999999999999999987654 36788999
Q ss_pred EeccCCCccc-cHHHHHhcCC-CC-----CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALFAT-SIANNILLGK-ED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~-~~-----~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
|+|+|.+|.. |++||+.++. +. ..++++.++++..++.+...+.| .+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 9999998752 11 12345666777777766665555 37999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecC
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGT 595 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~ 595 (782)
+++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998753 7899999999999865 89999999999999875
No 230
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=369.00 Aligned_cols=216 Identities=26% Similarity=0.417 Sum_probs=184.1
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC--------ccEEEECCeeCCCcCHH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT--------SGKILLDGHDLKSLQLK 448 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~--------~G~I~i~g~di~~~~~~ 448 (782)
|+++|++++|+++ .+|+|+||+|++|++++|+||||||||||+++|.|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 7899999999643 4999999999999999999999999999999999999998 99999999999988888
Q ss_pred HHHhHceEEeccCC-CccccHHHHHhcCCCCC----C--HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 449 WLREQMGLVSQEPA-LFATSIANNILLGKEDA----S--MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~-lf~~Ti~eNi~~g~~~~----~--~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.+|+.++||+|++. +|..|++||+.++.... . .++..+ .+++.+..+ |+++..+....+|||||||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 152 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGE-----IAWQALALA--GATALVGRDVTTLSGGELA 152 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHH
Confidence 88999999999986 57789999998863110 0 011111 112223332 4555666777899999999
Q ss_pred HHHHHHHhc---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCE
Q 003976 522 RIAIARAVL---------RNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQ 589 (782)
Q Consensus 522 RiaiARAl~---------~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ 589 (782)
|++||||++ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~ 232 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 999999999 59999999999999999999999999998753 799999999999986 599999999999
Q ss_pred EEEecChhHHhh
Q 003976 590 VVESGTHVDLIS 601 (782)
Q Consensus 590 ive~G~~~eL~~ 601 (782)
|++.|++++++.
T Consensus 233 i~~~g~~~~~~~ 244 (272)
T PRK13547 233 IVAHGAPADVLT 244 (272)
T ss_pred EEEecCHHHHcC
Confidence 999999999865
No 231
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.9e-42 Score=364.06 Aligned_cols=219 Identities=26% Similarity=0.426 Sum_probs=182.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCee-----CCCcCHHH-
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD-----LKSLQLKW- 449 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~d-----i~~~~~~~- 449 (782)
-|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.+ +.+++...
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCCc--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 48999999999753 49999999999999999999999999999999999999999999999998 87776554
Q ss_pred ---HHhHceEEeccCC--Ccc-ccHHHHHhcCC---CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 450 ---LREQMGLVSQEPA--LFA-TSIANNILLGK---EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 450 ---lR~~i~~V~Q~~~--lf~-~Ti~eNi~~g~---~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
+|+.++||+|++. ++. .|+.+||.+.. ...+.++..+ .+++++..++-+ ++.....+.+||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGMQ 157 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHHH
Confidence 3567999999984 443 48899986531 0111222221 234556665321 2456777889999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChh
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHV 597 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~ 597 (782)
||++||||++++|+||||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999988753 789999999999997 59999999999999999999
Q ss_pred HHhhc
Q 003976 598 DLISK 602 (782)
Q Consensus 598 eL~~~ 602 (782)
++...
T Consensus 238 ~~~~~ 242 (258)
T PRK11701 238 QVLDD 242 (258)
T ss_pred HHhcC
Confidence 98754
No 232
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=367.08 Aligned_cols=218 Identities=30% Similarity=0.454 Sum_probs=187.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--cCHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~--~~~~ 448 (782)
-|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|+++.+ .+..
T Consensus 20 ~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 20 VFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred eEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 59999999999743 499999999999999999999999999999999999864 69999999999864 3455
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCC-----CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~-----~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
.+|+.|+||+|++.+|+.|++|||.++... ..++++.++++.+++.+++. .........||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQRL 170 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHHHH
Confidence 778999999999999999999999986321 11334455666666654442 233456678999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEe---------CCEEEEe
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLK---------NGQVVES 593 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~---------~G~ive~ 593 (782)
+||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 999999999999999999999999999999999999877899999999999885 589999998 8999999
Q ss_pred cChhHHhhc
Q 003976 594 GTHVDLISK 602 (782)
Q Consensus 594 G~~~eL~~~ 602 (782)
|+.+|+...
T Consensus 251 g~~~~~~~~ 259 (274)
T PRK14265 251 SPTEQMFGS 259 (274)
T ss_pred CCHHHHHhC
Confidence 999998754
No 233
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-42 Score=361.49 Aligned_cols=210 Identities=32% Similarity=0.561 Sum_probs=182.0
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|++ .+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+. .|+.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999973 38999999999999999999999999999999999999999999999999987655 3678999
Q ss_pred EeccCCCcc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALFA-TSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf~-~Ti~eNi~~g~~~--~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
|+|++.+|. .|++||+.++... .+ ++++.++++..++.+++.+ ...+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNR-----------KPETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhc-----------CcccCCHHHHHHHHHHHHH
Confidence 999999996 6999999976422 11 2334555555555554433 3358999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
+++|++++|||||++||+.+.+.+.+.|+++.. ++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999998753 8999999999999875 999999999999999999998764
No 234
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-42 Score=377.25 Aligned_cols=224 Identities=22% Similarity=0.364 Sum_probs=184.5
Q ss_pred EEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC----CCccEEEECCeeCCCcCHHHH
Q 003976 377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE----PTSGKILLDGHDLKSLQLKWL 450 (782)
Q Consensus 377 i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~----~~~G~I~i~g~di~~~~~~~l 450 (782)
|+++|++++|+.+. ..+|+|+||+|++||+++|||+||||||||+++|+|+.+ |++|+|.+||+++.+++.+.+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 78999999996432 249999999999999999999999999999999999986 589999999999998887665
Q ss_pred H----hHceEEeccCCC--cc-ccHHHHHhcCCC----------C--CCHHHHHHHHHHhhhHhHHhcCCCCccccccCC
Q 003976 451 R----EQMGLVSQEPAL--FA-TSIANNILLGKE----------D--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511 (782)
Q Consensus 451 R----~~i~~V~Q~~~l--f~-~Ti~eNi~~g~~----------~--~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~ 511 (782)
+ +.|+||+|+|.. +. .||.+|+..... + ...+++.++++..++.+.- ......
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhCC
Confidence 4 479999999963 33 489999864210 0 0123445555555554211 112344
Q ss_pred CCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCC
Q 003976 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNG 588 (782)
Q Consensus 512 G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G 588 (782)
..+||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|+||++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999998764 7999999999999965 9999999999
Q ss_pred EEEEecChhHHhhc-CchhHH
Q 003976 589 QVVESGTHVDLISK-GGEYAA 608 (782)
Q Consensus 589 ~ive~G~~~eL~~~-~~~y~~ 608 (782)
+|+|.|+.+++.+. ...|.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHH
Confidence 99999999999875 345655
No 235
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.2e-42 Score=360.65 Aligned_cols=213 Identities=27% Similarity=0.445 Sum_probs=171.7
Q ss_pred EEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC---CCccEEEECCeeCCCcCHHHHH
Q 003976 377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE---PTSGKILLDGHDLKSLQLKWLR 451 (782)
Q Consensus 377 i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~---~~~G~I~i~g~di~~~~~~~lR 451 (782)
+.|+||+|+||+.. .++|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998652 459999999999999999999999999999999999999 99999999999875 34678
Q ss_pred hHceEEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHh-HHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 452 EQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHS-FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 452 ~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~-~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
+.++|++|++.+|++ |++||+.++..........++.+....++ .+..+ |+..........||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999987 99999997532110000001111111111 22221 333333455679999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCc-ch-hhhcCEEEEEeCCEEEEec
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRL-ST-VRDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl-~~-i~~aD~I~vl~~G~ive~G 594 (782)
+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++ .. .+.||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998875 478999999998 34 4669999999999999876
No 236
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3e-42 Score=366.82 Aligned_cols=227 Identities=28% Similarity=0.430 Sum_probs=189.1
Q ss_pred EEEEeEEEEcCCC-------CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH--
Q 003976 377 IEFSEVCFAYPSR-------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-- 447 (782)
Q Consensus 377 i~~~~v~f~y~~~-------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~-- 447 (782)
|+++||+|.|+.. ...+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8899999999731 2349999999999999999999999999999999999999999999999999988765
Q ss_pred -HHHHhHceEEeccCC--Cc-cccHHHHHhcCCC---CCCHHHHHHHHHHhhhHhHHhcCCCCccc-cccCCCCCCCHHH
Q 003976 448 -KWLREQMGLVSQEPA--LF-ATSIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGGQ 519 (782)
Q Consensus 448 -~~lR~~i~~V~Q~~~--lf-~~Ti~eNi~~g~~---~~~~~~i~~a~~~a~~~~~i~~lp~G~~t-~vge~G~~LSgGQ 519 (782)
..+|+.++||+|++. ++ ..|++||+.+... +.+.+ .....+++.+..+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 357889999999983 44 3699999875321 11111 1122234445444 6653 4567778999999
Q ss_pred HHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecCh
Q 003976 520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 520 kQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~ 596 (782)
|||++||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999998753 7899999999999975 899999999999999999
Q ss_pred hHHhhcCchhHHHH
Q 003976 597 VDLISKGGEYAALV 610 (782)
Q Consensus 597 ~eL~~~~~~y~~l~ 610 (782)
+|+....+.|...+
T Consensus 237 ~~~~~~~~~~~~~~ 250 (268)
T PRK10419 237 GDKLTFSSPAGRVL 250 (268)
T ss_pred hhccCCCCHHHHHH
Confidence 99987666565444
No 237
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.9e-42 Score=373.05 Aligned_cols=204 Identities=25% Similarity=0.457 Sum_probs=173.2
Q ss_pred EcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCc
Q 003976 385 AYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALF 464 (782)
Q Consensus 385 ~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf 464 (782)
+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++||||+|++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4543 249999999999999999999999999999999999999999999999999976 3456788999999999999
Q ss_pred cc-cHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEE
Q 003976 465 AT-SIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 537 (782)
Q Consensus 465 ~~-Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ill 537 (782)
.. |++||+.+... ..+. +++.++++..++.+ .......+||||||||++||||++++|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE-----------AADRPVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhCCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 99999987421 1122 23344444444332 2233456899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 538 LDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 538 LDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999999875 57999999999999865 999999999999999999998764
No 238
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=5.9e-42 Score=354.15 Aligned_cols=203 Identities=29% Similarity=0.459 Sum_probs=173.8
Q ss_pred EEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH---HHH
Q 003976 377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLR 451 (782)
Q Consensus 377 i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~---~lR 451 (782)
++++||++.|+... ..+|+|+||++++|+++||+||||||||||+++|.|+++|++|+|.+||.++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997432 3499999999999999999999999999999999999999999999999999877643 568
Q ss_pred hHceEEeccCCCcc-ccHHHHHhcCCC---CCCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 452 EQMGLVSQEPALFA-TSIANNILLGKE---DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 452 ~~i~~V~Q~~~lf~-~Ti~eNi~~g~~---~~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
+.|+|++|+|.+|. .|+.||+.++.. ..+.+ ++.++++..++.+++ .....+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHL-----------DYYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHH
Confidence 89999999999998 699999997642 12222 234444444444433 444468999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhhcCEEEEEeCCEE
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQV 590 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl~~G~i 590 (782)
+||||++++|++|||||||++||+++++.+.+.|+++. +++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999876 37999999999998888999999999986
No 239
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.3e-42 Score=378.47 Aligned_cols=208 Identities=30% Similarity=0.469 Sum_probs=177.7
Q ss_pred eEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC----HHHHHhHceE
Q 003976 381 EVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ----LKWLREQMGL 456 (782)
Q Consensus 381 ~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~----~~~lR~~i~~ 456 (782)
|++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|++|+|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 35 999999999999999999999999999999999999999999999987543 3467889999
Q ss_pred EeccCCCccc-cHHHHHhcCCCCCCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 457 VSQEPALFAT-SIANNILLGKEDASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~~~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
|+|++.+|.. |++||+.++......+ ++.+.++.. |++........+||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL-----------GIGHLLGRLPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 9999999875422211 233344333 44444455567899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 9999999999999999999999999998754 7999999999999865 9999999999999999999998653
No 240
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.2e-41 Score=359.61 Aligned_cols=214 Identities=24% Similarity=0.376 Sum_probs=179.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC----CccEEEECCeeCCCcCHHHHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP----TSGKILLDGHDLKSLQLKWLR 451 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~----~~G~I~i~g~di~~~~~~~lR 451 (782)
.|+++||+++| + .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++... +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 3 2499999999999999999999999999999999999999 999999999998632 2234
Q ss_pred hHceEEeccCC-Ccc--ccHHHHHhcC----CCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 452 EQMGLVSQEPA-LFA--TSIANNILLG----KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 452 ~~i~~V~Q~~~-lf~--~Ti~eNi~~g----~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
+.|+||+|++. .|. .|+.+|+.+. .....++++.++++..++.++ ++.++....+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 454 4888887542 112234456666666555332 23456667899999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
||||++++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998743 789999999999986 599999999999999999999976
Q ss_pred c
Q 003976 602 K 602 (782)
Q Consensus 602 ~ 602 (782)
.
T Consensus 231 ~ 231 (254)
T PRK10418 231 A 231 (254)
T ss_pred C
Confidence 5
No 241
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.8e-42 Score=366.86 Aligned_cols=214 Identities=30% Similarity=0.541 Sum_probs=187.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+.+|.. ...+|+||||+|++|+++|++|||||||||++++|+|++.|++|+|.++|.|...- ...+|++||
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999973 13499999999999999999999999999999999999999999999999998765 778899999
Q ss_pred EEeccCCCccc-cHHHHHhcCC-----C-CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGK-----E-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~-----~-~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
||||+|.++.. |++||+.|.. + ...++++.+.++..++.+.- ..+...||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999998876 9999998853 1 12245677777666654411 33456899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC-C-CeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS-N-RTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~-~-~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|+.+|++|||||||++|||.+...+.+.|+++.+ + +|++++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998865 4 799999999999987 999999999999999999997654
No 242
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-41 Score=338.11 Aligned_cols=171 Identities=55% Similarity=0.936 Sum_probs=162.3
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++...+|+|+||++++|+.++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999997642249999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceE
Q 003976 457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 536 (782)
Q Consensus 457 V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~il 536 (782)
++|++.+|+.|++||+ ||||||||++||||++++|++|
T Consensus 81 ~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 81 VPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCE
Q 003976 537 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 589 (782)
Q Consensus 537 lLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ 589 (782)
||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999999999998877899999999999998899999999985
No 243
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=9.7e-42 Score=353.21 Aligned_cols=205 Identities=26% Similarity=0.435 Sum_probs=176.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
++++||+++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECCE--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 4789999999743 4999999999999999999999999999999999999999999999999876432 247999
Q ss_pred EeccCCCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 457 VSQEPALFA-TSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 457 V~Q~~~lf~-~Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
++|++.+|. .|++||+.++.. ..+++++.++++..++.+.. .....+||||||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG-----------KKKAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999999887 599999986431 22455666666666655443 2334689999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhH
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~e 598 (782)
++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999875 4789999999999985 599999999999999998765
No 244
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-42 Score=339.55 Aligned_cols=170 Identities=32% Similarity=0.645 Sum_probs=158.5
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
++++|++++|+++ ++|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+ ..+|+.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4789999999753 4999999999999999999999999999999999999999999999999998766 677889999
Q ss_pred EeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCce
Q 003976 457 VSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 535 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~i 535 (782)
|+|++.+|.+ |++||+. ||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 78 LPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 9999999986 9999984 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEE
Q 003976 536 LLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQV 590 (782)
Q Consensus 536 llLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~i 590 (782)
|||||||++||+.+.+.+.+.|+++. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999875 4689999999999887 5899999999974
No 245
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=359.34 Aligned_cols=203 Identities=28% Similarity=0.454 Sum_probs=171.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999974 3499999999999999999999999999999999999999999999999998653 245899
Q ss_pred EeccCCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALFA-TSIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf~-~Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
++|++.+|. .|++||+.++.. .... +++.++++..++ +........+||||||||++||||+
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL-----------EGAEKRYIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhHhhCChhhCCHHHHHHHHHHHHH
Confidence 999999987 599999987532 1122 223344444333 3333445678999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEe--CCEEEEecChh
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLK--NGQVVESGTHV 597 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~--~G~ive~G~~~ 597 (782)
+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|+|++.++.+
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999873 48999999999999855 89999998 59999988753
No 246
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.1e-41 Score=357.42 Aligned_cols=218 Identities=27% Similarity=0.421 Sum_probs=181.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCee-----CCCcCHHH-
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD-----LKSLQLKW- 449 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~d-----i~~~~~~~- 449 (782)
-|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 48999999999743 48999999999999999999999999999999999999999999999988 77766553
Q ss_pred ---HHhHceEEeccCC--Cc-cccHHHHHhcCC---CCCCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHHH
Q 003976 450 ---LREQMGLVSQEPA--LF-ATSIANNILLGK---EDASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQ 519 (782)
Q Consensus 450 ---lR~~i~~V~Q~~~--lf-~~Ti~eNi~~g~---~~~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgGQ 519 (782)
+++.|+|++|++. ++ ..|+.+|+.+.. ......+. ...+.+++..+ |++ +........|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHHH
Confidence 3467999999985 33 358889986421 00011111 12345566666 343 46677788999999
Q ss_pred HHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecCh
Q 003976 520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 520 kQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~ 596 (782)
|||++||||++++|++|||||||++||+.+.+.+.+.|+++. .+.|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998874 37999999999999975 999999999999999999
Q ss_pred hHHhhc
Q 003976 597 VDLISK 602 (782)
Q Consensus 597 ~eL~~~ 602 (782)
+++...
T Consensus 234 ~~~~~~ 239 (253)
T TIGR02323 234 DQVLDD 239 (253)
T ss_pred HHHhcC
Confidence 998754
No 247
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-41 Score=346.90 Aligned_cols=190 Identities=22% Similarity=0.352 Sum_probs=164.1
Q ss_pred cEEEEeEEEEcCCC--CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC---CCccEEEECCeeCCCcCHHHH
Q 003976 376 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE---PTSGKILLDGHDLKSLQLKWL 450 (782)
Q Consensus 376 ~i~~~~v~f~y~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~---~~~G~I~i~g~di~~~~~~~l 450 (782)
.+.++||+|.|+.+ ...+|+|+||+|++||+++|+||||||||||+++|.|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999864 2349999999999999999999999999999999999999 89999999999998765 457
Q ss_pred HhHceEEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 451 REQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 451 R~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
|++++|++|++.+|.. |++||+.++... . ..+....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~---------------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC-K---------------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh-c---------------------------cccchhhCCHHHHHHHHHHHHH
Confidence 8899999999988875 999999875310 0 1234468999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecC-cchh-hhcCEEEEEeCCEEEEec
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHR-LSTV-RDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHr-l~~i-~~aD~I~vl~~G~ive~G 594 (782)
+++|++|||||||++||+++++.+.+.|+++.+ +.|+|+++|+ ++.+ +.||+|++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 5677776654 5565 569999999999998765
No 248
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-41 Score=340.16 Aligned_cols=172 Identities=42% Similarity=0.706 Sum_probs=160.2
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC--HHHHHhHc
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ--LKWLREQM 454 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~--~~~lR~~i 454 (782)
|+++|++++|+++ ++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++ ...+++++
T Consensus 1 i~~~~l~~~~~~~--~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECCe--EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 5789999999753 4999999999999999999999999999999999999999999999999998876 66788999
Q ss_pred eEEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 455 GLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
+|++|+|.+|.. |++||+.+. ||||||||++||||++++|
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 999999998865 999999764 9999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCE
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQ 589 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ 589 (782)
+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999998764 699999999999998 489999999985
No 249
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.1e-41 Score=356.22 Aligned_cols=214 Identities=25% Similarity=0.368 Sum_probs=172.8
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCcCHHHHH-hH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL--YEPTSGKILLDGHDLKSLQLKWLR-EQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~--~~~~~G~I~i~g~di~~~~~~~lR-~~ 453 (782)
|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|+|.+||.++..++....+ +.
T Consensus 2 i~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 7899999999753 499999999999999999999999999999999999 479999999999999988877665 57
Q ss_pred ceEEeccCCCccc-cHHHHHhcCCCCC---------CHHHHHHHHHHhhhHhHHh--cCCCCccccccCCCCCCCHHHHH
Q 003976 454 MGLVSQEPALFAT-SIANNILLGKEDA---------SMDRVIEAAKAANAHSFVE--GLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 454 i~~V~Q~~~lf~~-Ti~eNi~~g~~~~---------~~~~i~~a~~~a~~~~~i~--~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
++||+|++.++.. |..+|+.+..... ...+..+. +.+.+. .+|+++.+... ...|||||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~--~~~LS~G~~q 152 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDL-----MEEKIALLKMPEDLLTRSV--NVGFSGGEKK 152 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHH-----HHHHHHHcCCChhhcccCC--CCCCCHHHHH
Confidence 9999999987765 5555443221100 00111111 112222 35555544322 1379999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCcchhhh--cCEEEEEeCCEEEEecChhH
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD--VDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i~~--aD~I~vl~~G~ive~G~~~e 598 (782)
|++||||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. +|+|++|++|++++.|++++
T Consensus 153 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 153 RNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTL 232 (248)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999988754 7899999999999987 89999999999999999986
Q ss_pred H
Q 003976 599 L 599 (782)
Q Consensus 599 L 599 (782)
.
T Consensus 233 ~ 233 (248)
T PRK09580 233 V 233 (248)
T ss_pred H
Confidence 5
No 250
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-41 Score=348.43 Aligned_cols=204 Identities=31% Similarity=0.484 Sum_probs=170.4
Q ss_pred EEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC----HHHHHhH
Q 003976 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ----LKWLREQ 453 (782)
Q Consensus 378 ~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~----~~~lR~~ 453 (782)
.+ ||+++|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+|+.
T Consensus 3 ~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 3 CV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred ee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 44 899999753 24 99999999 999999999999999999999999999999999999986532 3457889
Q ss_pred ceEEeccCCCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 454 MGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 454 i~~V~Q~~~lf~-~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
++||+|++.+|. .|++||+.++......++ ....+.+++..+ |++........+||||||||++||||++++
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999996 599999998643222111 111223344443 455555667789999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEec
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESG 594 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G 594 (782)
|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 150 PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999998753 799999999999985 58999999999999876
No 251
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=350.94 Aligned_cols=216 Identities=34% Similarity=0.582 Sum_probs=190.9
Q ss_pred cEEEEeEEEEcCCCCC---------------------c-ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc
Q 003976 376 QIEFSEVCFAYPSRPH---------------------M-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~---------------------~-vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G 433 (782)
.|+++||+.-+..+++ . -++|+||+|+.||+..|-|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4788888887753221 1 47899999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCcCHHHHH----hHceEEeccCCCcc-ccHHHHHhcCCCC--C----CHHHHHHHHHHhhhHhHHhcCCC
Q 003976 434 KILLDGHDLKSLQLKWLR----EQMGLVSQEPALFA-TSIANNILLGKED--A----SMDRVIEAAKAANAHSFVEGLPD 502 (782)
Q Consensus 434 ~I~i~g~di~~~~~~~lR----~~i~~V~Q~~~lf~-~Ti~eNi~~g~~~--~----~~~~i~~a~~~a~~~~~i~~lp~ 502 (782)
+|++||.|+..++.+.|| +++++|+|..-||+ -||.||..||.+- . .++...++++.+++++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999988774 68999999999997 4999999999741 2 2345677788888888887766
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcch-hhhc
Q 003976 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLST-VRDV 579 (782)
Q Consensus 503 G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~-i~~a 579 (782)
.+||||+|||+.|||||..||+|||+|||+|||||--+...|+-|.++. -.||+|+|||+|+. ++-.
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 4799999999999999999999999999999999999999999987764 37999999999987 5778
Q ss_pred CEEEEEeCCEEEEecChhHHhhc
Q 003976 580 DTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 580 D~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|||..|++|+|++.||++|++.+
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLN 255 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcC
Confidence 99999999999999999999976
No 252
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.7e-41 Score=342.51 Aligned_cols=182 Identities=30% Similarity=0.539 Sum_probs=163.1
Q ss_pred cEEEEeEEEEcCCC----CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCC--CCCccEEEECCeeCCCcCHHH
Q 003976 376 QIEFSEVCFAYPSR----PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY--EPTSGKILLDGHDLKSLQLKW 449 (782)
Q Consensus 376 ~i~~~~v~f~y~~~----~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~--~~~~G~I~i~g~di~~~~~~~ 449 (782)
.|+++||+|+|++. ..++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. .+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 134999999999999999999999999999999999999 9999999999999875 36
Q ss_pred HHhHceEEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 450 LREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
+|+.++|++|++.+|.. |++||+.++.. + . .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~----------~-----~-------------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK----------L-----R-------------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH----------h-----c-------------------cCCHHHHHHHHHHHH
Confidence 78899999999999875 99999976421 0 0 899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcc-hh-hhcCEEEEEeCCEEEEec
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLS-TV-RDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~-~i-~~aD~I~vl~~G~ive~G 594 (782)
++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+ +.||+|++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999875 4899999999997 45 458999999999998764
No 253
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2e-41 Score=339.98 Aligned_cols=172 Identities=26% Similarity=0.501 Sum_probs=158.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH-HHHHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~-~~lR~~i 454 (782)
-|+++|++++| +|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.+||.++.+++. ..+|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 38999999998 8999999999999999999999999999999999999999999999999998874 4578899
Q ss_pred eEEeccC---CCc-cccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 455 GLVSQEP---ALF-ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 455 ~~V~Q~~---~lf-~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
+|++|++ .++ +.|++||+.++.+ ||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHHc
Confidence 9999995 344 5799999987532 9999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEE
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQV 590 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~i 590 (782)
++|++|||||||++||+++++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999875 47999999999999876 999999999975
No 254
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5e-41 Score=354.28 Aligned_cols=212 Identities=25% Similarity=0.383 Sum_probs=176.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCcCHHHHHh-
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL--YEPTSGKILLDGHDLKSLQLKWLRE- 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~--~~~~~G~I~i~g~di~~~~~~~lR~- 452 (782)
-|+++||+++|+++ .+|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.++|.++.+++....++
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 48999999999743 499999999999999999999999999999999998 7899999999999999888766654
Q ss_pred HceEEeccCCCccc-cHHHHHhcCCC---------CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCC-CCCH
Q 003976 453 QMGLVSQEPALFAT-SIANNILLGKE---------DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT-QLSG 517 (782)
Q Consensus 453 ~i~~V~Q~~~lf~~-Ti~eNi~~g~~---------~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~-~LSg 517 (782)
.+++++|++.+|.+ |+.+|+.++.. +.+. +++.++++..++ ++ +....... .|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~---~~~~~~~~~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGM-------DP---SFLSRNVNEGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCC-------ch---hhhccccccCCCH
Confidence 48999999999986 89999876421 0111 122233333322 21 22333333 5999
Q ss_pred HHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh--cCEEEEEeCCEEEEec
Q 003976 518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD--VDTIMVLKNGQVVESG 594 (782)
Q Consensus 518 GQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~--aD~I~vl~~G~ive~G 594 (782)
|||||++||||++++|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999875 48999999999999875 8999999999999999
Q ss_pred ChhHH
Q 003976 595 THVDL 599 (782)
Q Consensus 595 ~~~eL 599 (782)
+++++
T Consensus 235 ~~~~~ 239 (252)
T CHL00131 235 DAELA 239 (252)
T ss_pred Chhhh
Confidence 99843
No 255
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-41 Score=341.89 Aligned_cols=181 Identities=26% Similarity=0.455 Sum_probs=162.0
Q ss_pred cEEEEeEEEEcCCC--CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCC--CCCccEEEECCeeCCCcCHHHHH
Q 003976 376 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY--EPTSGKILLDGHDLKSLQLKWLR 451 (782)
Q Consensus 376 ~i~~~~v~f~y~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~--~~~~G~I~i~g~di~~~~~~~lR 451 (782)
.|+++|++|.|+++ ..++|+|+||++++|++++|+||||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999752 134999999999999999999999999999999999986 489999999999885 5678
Q ss_pred hHceEEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 452 EQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 452 ~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
++++|++|++.+|.. |++||+.++.. ++ +||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 899999999988875 99999986421 00 89999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcch--hhhcCEEEEEeC-CEEEEec
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLST--VRDVDTIMVLKN-GQVVESG 594 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~--i~~aD~I~vl~~-G~ive~G 594 (782)
++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++. .+.||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999875 47999999999984 467999999999 9999875
No 256
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.9e-41 Score=342.24 Aligned_cols=185 Identities=28% Similarity=0.476 Sum_probs=164.2
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCcCHHHH-HhH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL--YEPTSGKILLDGHDLKSLQLKWL-REQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~--~~~~~G~I~i~g~di~~~~~~~l-R~~ 453 (782)
++++|++++|+++ ++|+|+||++++||.++|+||||||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGGK--EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCCE--EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 4789999999742 499999999999999999999999999999999999 58999999999999999887654 556
Q ss_pred ceEEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 454 MGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 454 i~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
++||+|+|.+|++ |+++|+ .. ...+||||||||++||||++++
T Consensus 79 i~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred EEEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhcC
Confidence 9999999999986 555555 00 1147999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCcchhh--hcCEEEEEeCCEEEEecChhHHh
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVR--DVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i~--~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|+|+||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999998754 789999999999998 59999999999999999 45554
No 257
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=331.00 Aligned_cols=213 Identities=29% Similarity=0.487 Sum_probs=183.7
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
+++.+++.+|++ ...+++|+||+++.|+.++|.||+|+||||+++.|..++.|++|+|++||.|+... +...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 678999999985 33389999999999999999999999999999999999999999999999999874 5678999999
Q ss_pred EeccCCCccc-cHHHHHhcCCCCC--C----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 457 VSQEPALFAT-SIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~~~--~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
++-+.-|+.. |.+|||.|...-. . +.++.+..+.-++.+.+ |+.+ .++|-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv----~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRV----GEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHH----hhhchhhHHHHHHHHHH
Confidence 9988888865 9999999864311 1 22333333443443333 4444 46999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
++||+|++||||||+||..+.+.+++-|.++.. ||++|+.||-++.++ -||+|+++++|++|..|+.+++.++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999998875 999999999999998 5999999999999999999999865
No 258
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-41 Score=357.45 Aligned_cols=209 Identities=26% Similarity=0.432 Sum_probs=174.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHH-hHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR-EQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR-~~i 454 (782)
.|+++||+++|+++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++.. ..+ +.+
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceE
Confidence 48999999999632 349999999999999999999999999999999999999999999999998752 233 469
Q ss_pred eEEeccCCC---ccccHHHHHhcCCC---------C-CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 455 GLVSQEPAL---FATSIANNILLGKE---------D-ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 455 ~~V~Q~~~l---f~~Ti~eNi~~g~~---------~-~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
+|++|+|.+ +..++++|+.++.. . ..++++.++++..++.++. ++ ...+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~----~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------HR----QIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------cC----CcccCCHHHHH
Confidence 999999865 45689999876421 0 1123345555555554443 22 33579999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL 599 (782)
|++||||++++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999999875 4799999999999874 58999777 8999999999998
Q ss_pred hh
Q 003976 600 IS 601 (782)
Q Consensus 600 ~~ 601 (782)
..
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
No 259
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=6.6e-41 Score=331.22 Aligned_cols=164 Identities=34% Similarity=0.522 Sum_probs=151.9
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999743 34999999999999999999999999999999999999999999999983 57999
Q ss_pred EeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceE
Q 003976 457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 536 (782)
Q Consensus 457 V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~il 536 (782)
++|++.+++.|++||+.++ ...+||||||||++||||++++|+++
T Consensus 69 ~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred ECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999874 24689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCE
Q 003976 537 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 589 (782)
Q Consensus 537 lLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ 589 (782)
||||||++||+++.+.+.+.|+++ ++|+|++||+++....||+|++|++|-
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999999886 689999999999888899999998863
No 260
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.5e-41 Score=343.73 Aligned_cols=194 Identities=29% Similarity=0.519 Sum_probs=164.0
Q ss_pred EEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH----HHHHhHc
Q 003976 379 FSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL----KWLREQM 454 (782)
Q Consensus 379 ~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~----~~lR~~i 454 (782)
++||++.|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...|+.+
T Consensus 1 i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGDK--IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECCE--EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 47999999743 49999999999999999999999999999999999999999999999999765542 2467889
Q ss_pred eEEeccCCCcc-ccHHHHHhcCCCC--C----CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 455 GLVSQEPALFA-TSIANNILLGKED--A----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 455 ~~V~Q~~~lf~-~Ti~eNi~~g~~~--~----~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
+||+|++.+|. .|++||+.++... . .++++.++++..++.++ ......+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK-----------LKQKIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhh-----------hcCChhhCCHHHHHHHHHHH
Confidence 99999999997 6999999885321 1 12334455555444333 33345689999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEE
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVL 585 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl 585 (782)
|++++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999999875 479999999999988889999875
No 261
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=8.7e-41 Score=334.78 Aligned_cols=177 Identities=36% Similarity=0.634 Sum_probs=160.3
Q ss_pred EEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEE
Q 003976 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 457 (782)
Q Consensus 378 ~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V 457 (782)
+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999975 3499999999999999999999999999999999999999999999999999999988899999999
Q ss_pred eccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEE
Q 003976 458 SQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 537 (782)
Q Consensus 458 ~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ill 537 (782)
+| +++..++.+++. ....+||||||||++||||++++|+++|
T Consensus 79 ~q---------------------------~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~lll 120 (180)
T cd03214 79 PQ---------------------------ALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILL 120 (180)
T ss_pred HH---------------------------HHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99 555566655543 2456899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchh-hhcCEEEEEeCCEEEEec
Q 003976 538 LDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 538 LDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G 594 (782)
|||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+ +.||++++|++|++++.|
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999998765 78999999999998 559999999999998764
No 262
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-40 Score=332.71 Aligned_cols=220 Identities=27% Similarity=0.463 Sum_probs=190.7
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH-HHhHce
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQMG 455 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~-lR~~i~ 455 (782)
++++|++..|.. ..+|+|+||++++||+++++||+|+||||+++.|+|+.+|.+|+|.++|.||...+++. .|.-|+
T Consensus 4 L~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 4 LEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred eeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 789999999964 34999999999999999999999999999999999999999999999999999998765 588899
Q ss_pred EEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc
Q 003976 456 LVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ 534 (782)
||||.-.+|.. ||.||+.+|.-...+++. .....++..+-+|. +......++.+|||||+|-+||||||..+|+
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 99999999986 999999998532221111 11113334455663 6677788899999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 535 ILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 535 illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
+|+|||||.+|-|.-.+.|.++|+++.+ +.|+++|-++.... +-|||.+||++|+|+.+|+.+||.++.
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999874 56999999999875 569999999999999999999998764
No 263
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.2e-40 Score=349.00 Aligned_cols=208 Identities=25% Similarity=0.483 Sum_probs=180.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 48999999999753 499999999999999999999999999999999999999999999987 23699
Q ss_pred EEeccCCCcc---ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 456 LVSQEPALFA---TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 456 ~V~Q~~~lf~---~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
|++|++.++. .|+++|+.+.. ..+++++.++++..++.+++.. ....||||||||++||||++++
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRP-GTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EeccccccccccChhHHHHHhccc-cccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998865 48999987643 3456778888888887766543 3468999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhcCchhHHH
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKGGEYAAL 609 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l 609 (782)
|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++ +|++.|+++++.. ...|.++
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~ 216 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISM 216 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHH
Confidence 999999999999999999999999988753 799999999999985 5999999965 7999999999864 4456666
Q ss_pred H
Q 003976 610 V 610 (782)
Q Consensus 610 ~ 610 (782)
+
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 5
No 264
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.9e-40 Score=347.72 Aligned_cols=210 Identities=28% Similarity=0.490 Sum_probs=174.6
Q ss_pred EEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEE
Q 003976 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 457 (782)
Q Consensus 378 ~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V 457 (782)
+++||++. .+|+|+||+|++|++++|+||||||||||+++|.|++++ +|+|.+||.++.+.+...+++.++||
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 56777774 279999999999999999999999999999999999965 99999999999988888888899999
Q ss_pred eccCCC-ccccHHHHHhcCCCC-CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc----
Q 003976 458 SQEPAL-FATSIANNILLGKED-ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR---- 531 (782)
Q Consensus 458 ~Q~~~l-f~~Ti~eNi~~g~~~-~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~---- 531 (782)
+|++.+ +..|+++|+.++.+. .+.++.. ..+++.++.+ |++.........||||||||++||||++.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVA-----SALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHH-----HHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 999854 567999999987432 1111111 1122333333 33334445567899999999999999997
Q ss_pred ---CCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhh
Q 003976 532 ---NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 532 ---~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998875 579999999999976 5599999999999999999999865
No 265
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.7e-40 Score=345.54 Aligned_cols=200 Identities=32% Similarity=0.475 Sum_probs=166.7
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC----CccEEEECCeeCCCcCHHHHHhHceEEeccCC-Ccc--
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP----TSGKILLDGHDLKSLQLKWLREQMGLVSQEPA-LFA-- 465 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~----~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~-lf~-- 465 (782)
+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|+++... +..++.|+||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998764 333468999999995 444
Q ss_pred ccHHHHHhcCCCC--C-C---HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEe
Q 003976 466 TSIANNILLGKED--A-S---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLD 539 (782)
Q Consensus 466 ~Ti~eNi~~g~~~--~-~---~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLD 539 (782)
.|+.+|+.+.... . . .+++.++++..++. ++ ++.......+||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLP-------DP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCC-------ch-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4999998653211 1 1 22344444444432 21 23455667799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 003976 540 EATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 540 E~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999998753 789999999999986 5999999999999999999999865
No 266
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-40 Score=383.78 Aligned_cols=217 Identities=24% Similarity=0.446 Sum_probs=181.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC--CccEEEECCeeCCCcCHHH-HHh
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP--TSGKILLDGHDLKSLQLKW-LRE 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~--~~G~I~i~g~di~~~~~~~-lR~ 452 (782)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999964 3499999999999999999999999999999999999996 8999999999998877654 567
Q ss_pred HceEEeccCCCccc-cHHHHHhcCCCC-----CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 453 QMGLVSQEPALFAT-SIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 453 ~i~~V~Q~~~lf~~-Ti~eNi~~g~~~-----~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
.++||+|++.+|.. |++||+.++... .+.++..+. +.+.+..+ |++........+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR-----AQKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 89999999998875 999999987421 122222211 12233332 333333445568999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
||++.+|+|||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++..
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 232 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence 99999999999999999999999999999998874 57899999999999865 89999999999999999888743
No 267
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.6e-40 Score=381.37 Aligned_cols=213 Identities=26% Similarity=0.471 Sum_probs=182.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHH-hHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR-EQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR-~~i 454 (782)
-|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++...+...++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 4999999999974 3499999999999999999999999999999999999999999999999999888776655 469
Q ss_pred eEEeccCCCccc-cHHHHHhcCCCCC--CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 455 GLVSQEPALFAT-SIANNILLGKEDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~~~--~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
+||+|++.+|.. |++||+.++.... .++++.++++..++ +........+||||||||++|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGC-----------QLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCC-----------CccccCChhhCCHHHHHHHHHHHHHHc
Confidence 999999998875 9999999875321 12233344433333 222334456899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998874 47999999999998865 99999999999999999998764
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.3e-40 Score=325.30 Aligned_cols=159 Identities=32% Similarity=0.566 Sum_probs=148.8
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH-HHHHhHce
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQMG 455 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~-~~lR~~i~ 455 (782)
|+++||+++|+++ ++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+. +..|++++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 5789999999753 49999999999999999999999999999999999999999999999999998876 45678899
Q ss_pred EEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCce
Q 003976 456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 535 (782)
Q Consensus 456 ~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~i 535 (782)
|++| ||||||||++||||++++|++
T Consensus 79 ~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 79 MVYQ-------------------------------------------------------LSVGERQMVEIARALARNARL 103 (163)
T ss_pred EEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 9999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEE
Q 003976 536 LLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE 592 (782)
Q Consensus 536 llLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive 592 (782)
+||||||++||+++++.+.+.|+++. +++|+|++||++..+.. ||++++|++|++++
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999874 48999999999998765 99999999999975
No 269
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.9e-40 Score=369.69 Aligned_cols=225 Identities=32% Similarity=0.497 Sum_probs=184.9
Q ss_pred cEEEEeEEEEcCCC---------CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCee--CCC
Q 003976 376 QIEFSEVCFAYPSR---------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD--LKS 444 (782)
Q Consensus 376 ~i~~~~v~f~y~~~---------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~d--i~~ 444 (782)
-++++|++.+|..+ ...+++||||++++||++||||+||||||||.++|+|+++|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999742 1238999999999999999999999999999999999999999999999977 333
Q ss_pred cCHHHHHhHceEEeccCC--Ccc-ccHHHHHhcCCC---CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCC
Q 003976 445 LQLKWLREQMGLVSQEPA--LFA-TSIANNILLGKE---DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514 (782)
Q Consensus 445 ~~~~~lR~~i~~V~Q~~~--lf~-~Ti~eNi~~g~~---~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~ 514 (782)
-+..++|+++-+|+|||+ |-. .||+++|.-... ... .+.+.+..+..++.+ . ........
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~-------~---~l~ryP~e 429 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP-------E---FLDRYPHE 429 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCH-------H---HHhcCchh
Confidence 345678899999999996 333 599999874321 111 112333333333322 1 34566789
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEE
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVV 591 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~iv 591 (782)
||||||||+||||||..+|+++|+||||||||+.+...|.+.|.++.+ |-|.|+|||+++.++. ||||+||++|+||
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999988754 7999999999999977 9999999999999
Q ss_pred EecChhHHhhc-CchhHHHH
Q 003976 592 ESGTHVDLISK-GGEYAALV 610 (782)
Q Consensus 592 e~G~~~eL~~~-~~~y~~l~ 610 (782)
|.|+.+++.+. ...|.+..
T Consensus 510 E~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 510 EEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999877 56676654
No 270
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.8e-40 Score=335.24 Aligned_cols=195 Identities=26% Similarity=0.412 Sum_probs=169.0
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+++|+++ .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+|++++|
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 4789999999753 4999999999999999999999999999999999999999999999999987654 567899999
Q ss_pred EeccCCCc-cccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCce
Q 003976 457 VSQEPALF-ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 535 (782)
Q Consensus 457 V~Q~~~lf-~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~i 535 (782)
++|++.++ +.|++||+.+..+...++++.++++..++.++.. + ...+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-------R----PVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-------C----chhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999886 5799999998755445667777777777764432 2 2457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchh-hhcCEEEEE
Q 003976 536 LLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTV-RDVDTIMVL 585 (782)
Q Consensus 536 llLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i-~~aD~I~vl 585 (782)
+||||||++||+.+++.+.+.|+++. +++|+|++||+...+ ..+|+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998774 489999999987655 557888876
No 271
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.2e-40 Score=335.33 Aligned_cols=194 Identities=22% Similarity=0.355 Sum_probs=163.5
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ....+|++++|
T Consensus 2 l~~~~l~~~~~~~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCCe--eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 6899999999753 49999999999999999999999999999999999999999999999999875 34577899999
Q ss_pred EeccCCCc-cccHHHHHhcCCC-CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc
Q 003976 457 VSQEPALF-ATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534 (782)
Q Consensus 457 V~Q~~~lf-~~Ti~eNi~~g~~-~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ 534 (782)
++|++.++ ..|++||+.++.. ...+.++.++++..++ ++..+. ...+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~----~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSL-------EHLIDY----PCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCC-------chhhhC----ChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999987 4699999998631 1122233444433333 222233 334799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEE
Q 003976 535 ILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMV 584 (782)
Q Consensus 535 illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~v 584 (782)
+|||||||++||+.+...+.+.|+++. +++|+|++||+.+.+.+||.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999864 58999999999999999998664
No 272
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=387.38 Aligned_cols=226 Identities=27% Similarity=0.414 Sum_probs=184.7
Q ss_pred cEEEEeEEEEcCCC---------CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC
Q 003976 376 QIEFSEVCFAYPSR---------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ 446 (782)
Q Consensus 376 ~i~~~~v~f~y~~~---------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~ 446 (782)
-|+++||++.|+.+ ...+|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 48999999999632 124999999999999999999999999999999999999999999999999998876
Q ss_pred HH---HHHhHceEEeccC--CCcc-ccHHHHHhcCCC--CC-CH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCC
Q 003976 447 LK---WLREQMGLVSQEP--ALFA-TSIANNILLGKE--DA-SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513 (782)
Q Consensus 447 ~~---~lR~~i~~V~Q~~--~lf~-~Ti~eNi~~g~~--~~-~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~ 513 (782)
.. .+|++|+||+|+| .++. .|+.||+.++.. .. .. +++.+.++..++.+ ........
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~----------~~~~~~~~ 462 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP----------EHAWRYPH 462 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH----------HHhhCCcc
Confidence 43 4577899999998 3765 499999986421 11 11 23334444433321 12234446
Q ss_pred CCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEE
Q 003976 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQV 590 (782)
Q Consensus 514 ~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~i 590 (782)
+||||||||++|||||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999988753 7899999999999865 999999999999
Q ss_pred EEecChhHHhhc-CchhHH-HHH
Q 003976 591 VESGTHVDLISK-GGEYAA-LVN 611 (782)
Q Consensus 591 ve~G~~~eL~~~-~~~y~~-l~~ 611 (782)
++.|+.+++... ...|.+ ++.
T Consensus 543 v~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 543 VEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEecCHHHHhcCCCCHHHHHHHh
Confidence 999999999865 344644 443
No 273
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4.3e-40 Score=342.54 Aligned_cols=191 Identities=32% Similarity=0.473 Sum_probs=160.8
Q ss_pred cccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCcc-ccHHHHH
Q 003976 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNI 472 (782)
Q Consensus 394 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~-~Ti~eNi 472 (782)
|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+.+ .+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5799999999999999999999999999999999999999999999999876542 489999999998 5999999
Q ss_pred hcCC----CCCCHHH----HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCC
Q 003976 473 LLGK----EDASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544 (782)
Q Consensus 473 ~~g~----~~~~~~~----i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsa 544 (782)
.++. +..+.++ +.+.++..++. ........+||||||||++||||++++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLT-----------EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCH-----------HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 8752 2222222 33333333333 333344568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 545 LDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 545 lD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
||+.+++.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998874 37899999999998765 9999999999999998766553
No 274
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.5e-40 Score=335.56 Aligned_cols=195 Identities=22% Similarity=0.374 Sum_probs=168.8
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+.+ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+|++++|
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDER--ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECCE--EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 6899999999743 4999999999999999999999999999999999999999999999999998764 456788999
Q ss_pred EeccCCCcc-ccHHHHHhcCCCC---CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 457 VSQEPALFA-TSIANNILLGKED---ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 457 V~Q~~~lf~-~Ti~eNi~~g~~~---~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
++|++.++. .|++||+.++.+. .+++++.++++..++.++.. .....||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 999998887 5999999886432 23456677777777765442 23468999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhc-CEEEEE
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDV-DTIMVL 585 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~a-D~I~vl 585 (782)
|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+..| +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998874 478999999999999665 677766
No 275
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-40 Score=379.40 Aligned_cols=217 Identities=23% Similarity=0.406 Sum_probs=180.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH-HhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l-R~~i 454 (782)
-|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... |++|
T Consensus 5 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 38999999999643 49999999999999999999999999999999999999999999999999988876543 4679
Q ss_pred eEEeccCCCccc-cHHHHHhcCCCC---------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 455 GLVSQEPALFAT-SIANNILLGKED---------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~~---------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
+||+|++.+|.. |++||+.++... .+.++..+. +.+.+..+ |+.........+||||||||++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVR-----AAMMLLRV--GLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence 999999998875 999999886421 011121111 12222222 2322334445689999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
|||||+.+|+||||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 9999999999999999999999999999999998875 47999999999999865 89999999999999999988753
No 276
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.8e-40 Score=378.08 Aligned_cols=217 Identities=25% Similarity=0.429 Sum_probs=179.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH-HHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~-lR~~i 454 (782)
-|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.|
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999964 34999999999999999999999999999999999999999999999999997766544 46789
Q ss_pred eEEeccCCCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 455 GLVSQEPALFAT-SIANNILLGKED------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~~------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
+||+|++.+|.. |++||+.++... .+.++..+. +.+.+..+ |+.........+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE-----ADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 999999988875 999999987421 112222111 12223332 3332333445689999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 9999999999999999999999999999998874 47899999999999865 89999999999999999887643
No 277
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-40 Score=377.48 Aligned_cols=213 Identities=25% Similarity=0.415 Sum_probs=178.6
Q ss_pred EEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH-HHHHhHceEE
Q 003976 379 FSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQMGLV 457 (782)
Q Consensus 379 ~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~-~~lR~~i~~V 457 (782)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|+++...+. +.+|+.++||
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999974 349999999999999999999999999999999999999999999999999977654 4567889999
Q ss_pred eccCCCcc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 458 SQEPALFA-TSIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 458 ~Q~~~lf~-~Ti~eNi~~g~~~-----~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
+|++.+|. .|++||+.++... .+.++..+ .+.+.+..+ |++........+||||||||++||||+++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 99998776 4999999986421 12222221 123334333 44444555667899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999998874 57899999999998864 9999999999999999988864
No 278
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=376.75 Aligned_cols=212 Identities=27% Similarity=0.465 Sum_probs=176.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH-HHHHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~-~~lR~~i 454 (782)
-|+++||+++|+++ .+|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|.++...+. +.+|++|
T Consensus 4 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 48999999999743 49999999999999999999999999999999999999999999999999976553 4678899
Q ss_pred eEEeccCCCccc-cHHHHHhcCCCC-----CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 455 GLVSQEPALFAT-SIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~~-----~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
+||+|++.+|.. |++||+.++... .+.++..+ .+.+.+..+ |++........+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 999999999876 999999986421 12222211 122333333 33323344556899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecCh
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~ 596 (782)
++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+|++.++.
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999998874 47999999999999865 999999999999987653
No 279
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=8.2e-40 Score=341.80 Aligned_cols=195 Identities=26% Similarity=0.444 Sum_probs=159.2
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEe-ccCCCcc-ccHH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVS-QEPALFA-TSIA 469 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~-Q~~~lf~-~Ti~ 469 (782)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. ...+|++++|++ |++.+|. .|++
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcHH
Confidence 499999999999999999999999999999999999999999999999987653 346788999997 6677764 6999
Q ss_pred HHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCH
Q 003976 470 NNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547 (782)
Q Consensus 470 eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~ 547 (782)
||+.+... ..+.++..+.++ .+.+.+ .+++..++. ...||||||||++||||++.+|++|||||||++||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~--~~l~~~-gl~~~~~~~----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLD--ELSELL-DLEELLDTP----VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH--HHHHHc-CChhHhcCC----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 99977532 123333322211 111221 233333444 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEec
Q 003976 548 ESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594 (782)
Q Consensus 548 ~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G 594 (782)
.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 187 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 187 VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999998753 7899999999998865 8999999999998765
No 280
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.7e-39 Score=374.45 Aligned_cols=211 Identities=21% Similarity=0.313 Sum_probs=181.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++ .+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.++|
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 8899999999753 39999999999999999999999999999999999999999999999998887777788889999
Q ss_pred EeccCCC--c-------cccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 457 VSQEPAL--F-------ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 457 V~Q~~~l--f-------~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
|+|++.+ + ..|++||+.++.. .++++.++++..++.+. ......+||||||||++|||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVK--DPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccchh--HHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHHHHHH
Confidence 9998753 2 4589999876521 23445555555554433 23344689999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.+ ||+|++|++|+++..|+.+++...
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 9999999999999999999999999999998875 47899999999999865 899999999999999999988653
No 281
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-39 Score=330.91 Aligned_cols=194 Identities=27% Similarity=0.406 Sum_probs=167.0
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||++.|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. .. +|++++|
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHY 77 (207)
T ss_pred EEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEE
Confidence 7899999999743 49999999999999999999999999999999999999999999999998753 22 8899999
Q ss_pred EeccCCCc-cccHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 457 VSQEPALF-ATSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 457 V~Q~~~lf-~~Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
++|++.++ ..|++||+.+... ...++++.++++..++.++.. . ...+||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~----------~~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-L----------PFGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-C----------ChhhcCHHHHHHHHHHHHHhcCC
Confidence 99988776 5799999987532 223456777777777765432 2 22479999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHH-hCCCeEEEEecCcchhhhcCEEEEEeC
Q 003976 534 KILLLDEATSALDAESELIVQRALEKI-MSNRTTIVVAHRLSTVRDVDTIMVLKN 587 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~-~~~~T~i~iaHrl~~i~~aD~I~vl~~ 587 (782)
++|||||||++||+.+.+.+.+.|+++ .+++|+|++||++..+.. |+++.++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999876 458999999999999998 99988854
No 282
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.3e-39 Score=329.44 Aligned_cols=192 Identities=24% Similarity=0.383 Sum_probs=163.1
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|+++.|+++ .+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 5789999999743 4999999999999999999999999999999999999999999999999998775 456889999
Q ss_pred EeccCCCcc-ccHHHHHhcCCCCC--CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 457 VSQEPALFA-TSIANNILLGKEDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 457 V~Q~~~lf~-~Ti~eNi~~g~~~~--~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
++|++.+|. .|++||+.+..+.. .++++.++++..++.++.. ....+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 999999887 59999998754221 1335667777777665542 223579999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHH-hCCCeEEEEecCcchhhhcCEEE
Q 003976 534 KILLLDEATSALDAESELIVQRALEKI-MSNRTTIVVAHRLSTVRDVDTIM 583 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~-~~~~T~i~iaHrl~~i~~aD~I~ 583 (782)
+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+...+.. |+.+
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 999999999999999999999999986 457899999999865443 5544
No 283
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-39 Score=338.42 Aligned_cols=225 Identities=29% Similarity=0.490 Sum_probs=181.0
Q ss_pred EEEEeEEEEcCCCCC--cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-C----CccEEEECCeeCCCcCHHH
Q 003976 377 IEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-P----TSGKILLDGHDLKSLQLKW 449 (782)
Q Consensus 377 i~~~~v~f~y~~~~~--~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-~----~~G~I~i~g~di~~~~~~~ 449 (782)
++++|++.+|+.... .+++||||++++||++||||.|||||||+.+.|+|+.+ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 578999999976432 39999999999999999999999999999999999998 4 5799999999999999876
Q ss_pred HH----hHceEEeccCC-Cccc--cHHHHH----hcCCCCCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCC
Q 003976 450 LR----EQMGLVSQEPA-LFAT--SIANNI----LLGKEDAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514 (782)
Q Consensus 450 lR----~~i~~V~Q~~~-lf~~--Ti~eNi----~~g~~~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~ 514 (782)
+| +.|++|+|+|. =||- ||.+-| .......+ .++..+.++..++.+- +.....-..+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 54 48999999984 3332 554433 32211101 2234445555544321 2234455689
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-hcCEEEEEeCCEEE
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVV 591 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~-~aD~I~vl~~G~iv 591 (782)
||||||||+.||-|++.+|++||-||||+|||...+++|.+.|+++. .|.|+|+|||++..+. -||||+||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999999886 4899999999999875 49999999999999
Q ss_pred EecChhHHhhcC-chhHHH
Q 003976 592 ESGTHVDLISKG-GEYAAL 609 (782)
Q Consensus 592 e~G~~~eL~~~~-~~y~~l 609 (782)
|.|+.+++.++. -.|.+.
T Consensus 234 E~g~~~~i~~~P~HPYT~~ 252 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRG 252 (316)
T ss_pred EeCCHHHHhcCCCChHHHH
Confidence 999999999873 445443
No 284
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.9e-39 Score=377.28 Aligned_cols=219 Identities=31% Similarity=0.505 Sum_probs=178.7
Q ss_pred cEEEEeEEEEcCCC---------CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC
Q 003976 376 QIEFSEVCFAYPSR---------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ 446 (782)
Q Consensus 376 ~i~~~~v~f~y~~~---------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~ 446 (782)
-|+++||+++|+.+ ...+|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.++|.++..++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999631 234999999999999999999999999999999999999 58999999999998776
Q ss_pred HHH---HHhHceEEeccC--CCcc-ccHHHHHhcCCC----CCCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCC
Q 003976 447 LKW---LREQMGLVSQEP--ALFA-TSIANNILLGKE----DASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQL 515 (782)
Q Consensus 447 ~~~---lR~~i~~V~Q~~--~lf~-~Ti~eNi~~g~~----~~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~L 515 (782)
... +|++|+||+|++ .+|. .|++||+.++.. ..+..+..+ .+.+.+..+ |+. ........+|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~L 426 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQ-----QVIAVMEEV--GLDPETRHRYPAEF 426 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHH-----HHHHHHHHc--CCCHHHHhcCCccC
Confidence 543 477899999998 3676 499999987521 011111111 112233332 332 1234455789
Q ss_pred CHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEE
Q 003976 516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE 592 (782)
Q Consensus 516 SgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive 592 (782)
|||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 37899999999998865 99999999999999
Q ss_pred ecChhHHhhc
Q 003976 593 SGTHVDLISK 602 (782)
Q Consensus 593 ~G~~~eL~~~ 602 (782)
.|+.+++...
T Consensus 507 ~~~~~~~~~~ 516 (529)
T PRK15134 507 QGDCERVFAA 516 (529)
T ss_pred EcCHHHHhcC
Confidence 9999999754
No 285
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.1e-39 Score=384.84 Aligned_cols=217 Identities=23% Similarity=0.381 Sum_probs=182.5
Q ss_pred cEEEEeEEEEcCCC-------CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCc
Q 003976 376 QIEFSEVCFAYPSR-------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSL 445 (782)
Q Consensus 376 ~i~~~~v~f~y~~~-------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~di~~~ 445 (782)
+++|.++. +++.. .+++|+|+|+++++||.+||+||||||||||+++|.|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 56666666 55322 234999999999999999999999999999999999999885 899999999875
Q ss_pred CHHHHHhHceEEeccCCCccc-cHHHHHhcCCC-----CCCHHHHHHHHHHhhhHhHHhc--CCCCccccccCC--CCCC
Q 003976 446 QLKWLREQMGLVSQEPALFAT-SIANNILLGKE-----DASMDRVIEAAKAANAHSFVEG--LPDGYQTQVGEG--GTQL 515 (782)
Q Consensus 446 ~~~~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~-----~~~~~~i~~a~~~a~~~~~i~~--lp~G~~t~vge~--G~~L 515 (782)
...+|+.+|||+|++++++. ||+|||.|+.. +.+.++ +...+++.++. |++..||.||+. +..|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 46789999999999999965 99999998642 112222 12223444443 566789999984 4789
Q ss_pred CHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcc-h-hhhcCEEEEEeCCEEEE
Q 003976 516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLS-T-VRDVDTIMVLKNGQVVE 592 (782)
Q Consensus 516 SgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~-~-i~~aD~I~vl~~G~ive 592 (782)
|||||||++|||||+++|+||+||||||+||+.+...+.+.|+++. +|+|+|+++|+++ . .+.+|+|++|++|++++
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 9999999999999999999999999999999999999999999885 4899999999996 3 57799999999999999
Q ss_pred ecChhHHhh
Q 003976 593 SGTHVDLIS 601 (782)
Q Consensus 593 ~G~~~eL~~ 601 (782)
+|+++++.+
T Consensus 248 ~G~~~~~~~ 256 (617)
T TIGR00955 248 LGSPDQAVP 256 (617)
T ss_pred ECCHHHHHH
Confidence 999999864
No 286
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=327.96 Aligned_cols=220 Identities=25% Similarity=0.476 Sum_probs=187.8
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH-HhHce
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQMG 455 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l-R~~i~ 455 (782)
++.++++.+|.+ -.+++|+||++++||+++|+||+|+||||++|+|.|+|.|++|+|.++|.||..++++.. |.-|+
T Consensus 5 L~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 568999999964 349999999999999999999999999999999999999999999999999999998765 66788
Q ss_pred EEeccCCCccc-cHHHHHhcCCCC------------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGKED------------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~------------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
--+|.+.+|++ |+.||+..+... ...++-+...++-.+.+++ |++-.-.+...+||+||+.|
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-----gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-----GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-----CCchhhcchhhcCChhHhHH
Confidence 89999999987 999999987321 1111111122222344444 66666677777999999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL 599 (782)
+-|||||..+|++|+||||.++|.+.....+.+.|+++.+ |.|+++|.|+++.+.+ ||||+||+.|+++.+|+++|.
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999999875 4899999999999865 999999999999999999999
Q ss_pred hhcC
Q 003976 600 ISKG 603 (782)
Q Consensus 600 ~~~~ 603 (782)
.++.
T Consensus 238 ~~dp 241 (250)
T COG0411 238 RNNP 241 (250)
T ss_pred hcCH
Confidence 8753
No 287
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=308.29 Aligned_cols=195 Identities=32% Similarity=0.553 Sum_probs=169.4
Q ss_pred cCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCcc
Q 003976 386 YPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA 465 (782)
Q Consensus 386 y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~ 465 (782)
|.....++|+|+||++.+||.+||.||||||||||++.++-+..|++|.++..|.|++.++++.+|++|+|+-|.|.||.
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 33333459999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCCC----CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCC
Q 003976 466 TSIANNILLGKE----DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 541 (782)
Q Consensus 466 ~Ti~eNi~~g~~----~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~ 541 (782)
+||.||+.|.-. ..+.+...+-++.+++. ++.+..+-.+||||+||||||+|-|---|+||+|||+
T Consensus 91 ~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~----------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRPDRAAALDLLARFALP----------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred cchhhccccchHHhccCCChHHHHHHHHHcCCc----------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 999999998521 12233333333333332 4455667789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcch-hhhcCEEEEEeCCEE
Q 003976 542 TSALDAESELIVQRALEKIM--SNRTTIVVAHRLST-VRDVDTIMVLKNGQV 590 (782)
Q Consensus 542 tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~-i~~aD~I~vl~~G~i 590 (782)
|||||+.+.+.|.+-|.++- +++.++-|||.-.. ++.||+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99999999999999998875 57899999999988 899999999999986
No 288
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=381.86 Aligned_cols=219 Identities=28% Similarity=0.424 Sum_probs=178.0
Q ss_pred cEEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC----------
Q 003976 376 QIEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK---------- 443 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~---------- 443 (782)
-|+++|++++|+... .++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996422 24999999999999999999999999999999999999999999999998552
Q ss_pred CcCHH---HHH-hHceEEeccC--CCcc-ccHHHHHhcCCC---CCCHHH----HHHHHHHhhhHhHHhcCCCCcccccc
Q 003976 444 SLQLK---WLR-EQMGLVSQEP--ALFA-TSIANNILLGKE---DASMDR----VIEAAKAANAHSFVEGLPDGYQTQVG 509 (782)
Q Consensus 444 ~~~~~---~lR-~~i~~V~Q~~--~lf~-~Ti~eNi~~g~~---~~~~~~----i~~a~~~a~~~~~i~~lp~G~~t~vg 509 (782)
+.+.. .+| ++||||+|+| .++. .|++|||.++.. ..+.++ +.++++..++ |+ .+....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL-------~~-~~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRI-------PE-AQTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCC-------CC-hhhHHh
Confidence 22322 334 4799999998 5776 499999987531 122222 2333333222 21 012345
Q ss_pred CCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhh-cCEEEEEe
Q 003976 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-S-NRTTIVVAHRLSTVRD-VDTIMVLK 586 (782)
Q Consensus 510 e~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~-~~T~i~iaHrl~~i~~-aD~I~vl~ 586 (782)
....+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. + |+|+|+|||++..+.. ||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 5567899999999999999999999999999999999999999999999885 3 8999999999999855 99999999
Q ss_pred CCEEEEecChhHHhhc
Q 003976 587 NGQVVESGTHVDLISK 602 (782)
Q Consensus 587 ~G~ive~G~~~eL~~~ 602 (782)
+|+|++.|+++++...
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999999998754
No 289
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.3e-39 Score=384.33 Aligned_cols=201 Identities=26% Similarity=0.462 Sum_probs=172.1
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC--ccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc-cH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT--SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SI 468 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~--~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~-Ti 468 (782)
.+|+|+|+++++||++||+||||||||||+++|.|+++|+ +|+|.+||+++.. ..++++|||+|++.+|.. |+
T Consensus 82 ~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lTV 157 (659)
T PLN03211 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLTV 157 (659)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCCH
Confidence 3999999999999999999999999999999999999985 8999999998742 456679999999999964 99
Q ss_pred HHHHhcCC----C-CCCHHHHHHHHHHhhhHhHHh--cCCCCccccccCC-CCCCCHHHHHHHHHHHHhccCCceEEEeC
Q 003976 469 ANNILLGK----E-DASMDRVIEAAKAANAHSFVE--GLPDGYQTQVGEG-GTQLSGGQKQRIAIARAVLRNPKILLLDE 540 (782)
Q Consensus 469 ~eNi~~g~----~-~~~~~~i~~a~~~a~~~~~i~--~lp~G~~t~vge~-G~~LSgGQkQRiaiARAl~~~p~illLDE 540 (782)
+||+.++. + +.++++..+.+ ++.++ .|++..||.+|++ ...||||||||++|||||+++|+||+|||
T Consensus 158 ~E~l~~~a~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDE 232 (659)
T PLN03211 158 RETLVFCSLLRLPKSLTKQEKILVA-----ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 232 (659)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHH-----HHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeC
Confidence 99998853 2 22333322222 23333 3555669999865 67899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcch--hhhcCEEEEEeCCEEEEecChhHHhh
Q 003976 541 ATSALDAESELIVQRALEKIM-SNRTTIVVAHRLST--VRDVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 541 ~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~--i~~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
|||+||+.++..+.+.|+++. +|+|+|+++|+++. .+.+|+|++|++|++++.|+++++.+
T Consensus 233 PtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 233 PTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999999999876 58999999999984 46699999999999999999999875
No 290
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.7e-39 Score=330.00 Aligned_cols=196 Identities=27% Similarity=0.332 Sum_probs=164.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++|++++|+++ ++++|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|+++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 48999999999753 499999999999999999999999999999999999999999999999998753 3466899
Q ss_pred EEeccCCCccc-cHHHHHhcCCC--CCC-HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 456 LVSQEPALFAT-SIANNILLGKE--DAS-MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~--~~~-~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
|++|++.+|.. |++||+.++.+ ... ++.+.++++..+ |++..++ ....||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~----~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVG-------LAGYEDT----LVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcC-------ChhhccC----ChhhCCHHHHHHHHHHHHHhc
Confidence 99999999986 99999987532 111 222333333332 3333333 346899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeC
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKN 587 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~ 587 (782)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998764 57999999999999854 799999874
No 291
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.5e-39 Score=371.83 Aligned_cols=215 Identities=24% Similarity=0.438 Sum_probs=177.1
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC--CccEEEECCeeCCCcCHHH-HHhH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP--TSGKILLDGHDLKSLQLKW-LREQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~--~~G~I~i~g~di~~~~~~~-lR~~ 453 (782)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|.|+++| ++|+|.++|.++...+... .|+.
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999964 2499999999999999999999999999999999999987 7999999999998877654 4677
Q ss_pred ceEEeccCCCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhhhHhHHhcCCCCccccc-cCCCCCCCHHHHHHHHH
Q 003976 454 MGLVSQEPALFAT-SIANNILLGKED------ASMDRVIEAAKAANAHSFVEGLPDGYQTQV-GEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 454 i~~V~Q~~~lf~~-Ti~eNi~~g~~~------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~v-ge~G~~LSgGQkQRiai 525 (782)
|+||+|++.+|.. |++||+.++... .+.++..+ .+.+.++.+ |++... .....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999988875 999999986421 11222211 122333332 222111 12345799999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
|||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 999999999999999999999999999999998874 47899999999999865 9999999999999999877653
No 292
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.5e-39 Score=373.41 Aligned_cols=219 Identities=27% Similarity=0.452 Sum_probs=178.9
Q ss_pred cEEEEeEEEEcCCC--CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCcCHH
Q 003976 376 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSLQLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~~~~~ 448 (782)
-|+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999742 12499999999999999999999999999999999999987 799999999999887654
Q ss_pred H---HH-hHceEEeccCC--Ccc-ccHHHHHhcCC---CCCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCC
Q 003976 449 W---LR-EQMGLVSQEPA--LFA-TSIANNILLGK---EDASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514 (782)
Q Consensus 449 ~---lR-~~i~~V~Q~~~--lf~-~Ti~eNi~~g~---~~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~ 514 (782)
. +| ++||||+|+|. ++. .|+++|+.++. ...+. +++.++++..++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 3 34 57999999985 444 49999987421 11122 3344444444442211 112344568
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEE
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVV 591 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~iv 591 (782)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999874 37999999999999865 8999999999999
Q ss_pred EecChhHHhhc
Q 003976 592 ESGTHVDLISK 602 (782)
Q Consensus 592 e~G~~~eL~~~ 602 (782)
+.|+.+++...
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998754
No 293
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.9e-39 Score=359.19 Aligned_cols=225 Identities=28% Similarity=0.496 Sum_probs=185.2
Q ss_pred cEEEEeEEEEcCCCCC--cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC----ccEEEECCeeCCCcCHHH
Q 003976 376 QIEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT----SGKILLDGHDLKSLQLKW 449 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~--~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~----~G~I~i~g~di~~~~~~~ 449 (782)
-++++|++..|..... .+++|+||+|.+||++||||.|||||||+++.|.|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4889999999975533 3999999999999999999999999999999999999988 899999999999999876
Q ss_pred HH----hHceEEeccCC-Cccc--cHHHHHh----cCCCCC---CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCC
Q 003976 450 LR----EQMGLVSQEPA-LFAT--SIANNIL----LGKEDA---SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 515 (782)
Q Consensus 450 lR----~~i~~V~Q~~~-lf~~--Ti~eNi~----~g~~~~---~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~L 515 (782)
+| +.|++|+|+|. .+|- ||.+-|. ...+.. ..++..+.++.++ ||+-..- ..-..+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vg-------l~~~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVG-------LPDPERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcC-------CCChhhh--ccCCccc
Confidence 64 67999999995 6664 6655543 222111 1223334444444 3433222 4567899
Q ss_pred CHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEE
Q 003976 516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE 592 (782)
Q Consensus 516 SgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive 592 (782)
|||||||+.||+||..+|++||+||||.|||+.+++.|.+.|+++. .|.++|+|||.+..+.+ ||||+||++|+|||
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999886 58999999999999865 89999999999999
Q ss_pred ecChhHHhhc-CchhHHH
Q 003976 593 SGTHVDLISK-GGEYAAL 609 (782)
Q Consensus 593 ~G~~~eL~~~-~~~y~~l 609 (782)
.|+.++++++ ...|.+-
T Consensus 236 ~G~~~~i~~~p~hpYT~~ 253 (539)
T COG1123 236 TGPTEEILSNPQHPYTRG 253 (539)
T ss_pred ecCHHHHHhccCCcccHH
Confidence 9999999987 3455443
No 294
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-40 Score=319.36 Aligned_cols=223 Identities=26% Similarity=0.495 Sum_probs=190.5
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH-HHhH
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQ 453 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~-lR~~ 453 (782)
+.+..+|+..+|..+. |.+|+||++++||.|++.||+|+||||...++.|+..|++|+|.+||.||+.++... -|--
T Consensus 3 ~~L~a~~l~K~y~kr~--Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCCee--eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 3578899999997654 999999999999999999999999999999999999999999999999999999764 4667
Q ss_pred ceEEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 454 MGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 454 i~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
|||.||||.+|.+ |++|||..-.+ ..+.+...+.+...+++.++.+ ++...-...|.+||||||.|+-|||||..+
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE-~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLE-IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHh-hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 9999999999998 99999987654 2222222233333344444444 455666778899999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCc-chhhhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRL-STVRDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl-~~i~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|+.+|||||++++||.+-..|++.++.+. +|--+++.-|.. +|+.-|||.|++.+|+|..+|+++|+.++
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 99999999999999999999999999886 466777778886 57888999999999999999999999875
No 295
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6e-39 Score=372.47 Aligned_cols=220 Identities=24% Similarity=0.431 Sum_probs=176.3
Q ss_pred cEEEEeEEEEcCC---CCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEEC-Cee---CCCcC--
Q 003976 376 QIEFSEVCFAYPS---RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLD-GHD---LKSLQ-- 446 (782)
Q Consensus 376 ~i~~~~v~f~y~~---~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~-g~d---i~~~~-- 446 (782)
-|+++||+++|++ +..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999963 12349999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHHhHceEEeccCCCccc-cHHHHHhcCCC-CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHH
Q 003976 447 -LKWLREQMGLVSQEPALFAT-SIANNILLGKE-DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 519 (782)
Q Consensus 447 -~~~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~-~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQ 519 (782)
...+|++|+||+|++.+|.. |++||+.++.. .... +++.++++..++.+. -.+........+|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHH
Confidence 23567789999999988875 99999986421 1111 222333333332110 00012344557899999
Q ss_pred HHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecCh
Q 003976 520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 520 kQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~ 596 (782)
|||++||||++.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998875 37999999999999865 899999999999999999
Q ss_pred hHHhh
Q 003976 597 VDLIS 601 (782)
Q Consensus 597 ~eL~~ 601 (782)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88754
No 296
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1e-38 Score=330.76 Aligned_cols=199 Identities=29% Similarity=0.408 Sum_probs=160.4
Q ss_pred EEEEeEEEEcCCC-----CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEEC--Ce--eCCCcCH
Q 003976 377 IEFSEVCFAYPSR-----PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLD--GH--DLKSLQL 447 (782)
Q Consensus 377 i~~~~v~f~y~~~-----~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~--g~--di~~~~~ 447 (782)
|+++||+++|+.. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1249999999999999999999999999999999999999999999998 42 6666665
Q ss_pred HH---H-HhHceEEeccCCCccc-cHHHHHhcCCC--CCCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCC
Q 003976 448 KW---L-REQMGLVSQEPALFAT-SIANNILLGKE--DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS 516 (782)
Q Consensus 448 ~~---l-R~~i~~V~Q~~~lf~~-Ti~eNi~~g~~--~~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LS 516 (782)
.. + +++++||+|++.+|.. |++|||.+... ....+ ++.++++..++ ++.+ ....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~---~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNI-------PERL---WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhh---hhCCcccCC
Confidence 43 3 4579999999998875 99999986421 12222 22233333222 2111 123467899
Q ss_pred HHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEE
Q 003976 517 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVL 585 (782)
Q Consensus 517 gGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl 585 (782)
||||||++||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999999875 4789999999999886 59999876
No 297
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=377.87 Aligned_cols=218 Identities=30% Similarity=0.493 Sum_probs=187.7
Q ss_pred cEEEEeEEEEcCCC--CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH---
Q 003976 376 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL--- 450 (782)
Q Consensus 376 ~i~~~~v~f~y~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l--- 450 (782)
-|+++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+.+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999742 2349999999999999999999999999999999999999999999999999999887664
Q ss_pred -HhHceEEeccCCCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 451 -REQMGLVSQEPALFAT-SIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 451 -R~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~--~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
|+.++|++|++.+|.. |+.||+.++... .+.++ ....+++.++.+ |++..+.....+||||||||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 5789999999999975 999999874311 11111 112234445444 556666666779999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHh
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.++.||++++|++|+++++|+.+|..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999999875 589999999999999999999999999999999999886
No 298
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=8.7e-39 Score=371.10 Aligned_cols=212 Identities=28% Similarity=0.538 Sum_probs=173.5
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCC--CCCccEEEEC----------------
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY--EPTSGKILLD---------------- 438 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~--~~~~G~I~i~---------------- 438 (782)
|+++|++++|++ ..+|+|+||++++|++++|+||||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999964 34999999999999999999999999999999999996 7999999997
Q ss_pred -------CeeCC-------CcC---HHHHHhHceEEecc-CCCcc-ccHHHHHhcCCC--CCCHH----HHHHHHHHhhh
Q 003976 439 -------GHDLK-------SLQ---LKWLREQMGLVSQE-PALFA-TSIANNILLGKE--DASMD----RVIEAAKAANA 493 (782)
Q Consensus 439 -------g~di~-------~~~---~~~lR~~i~~V~Q~-~~lf~-~Ti~eNi~~g~~--~~~~~----~i~~a~~~a~~ 493 (782)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ..+.+ ++.++++..+
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g- 157 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ- 157 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-
Confidence 33331 111 23567889999998 57776 499999987532 12222 2333333333
Q ss_pred HhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEec
Q 003976 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAH 571 (782)
Q Consensus 494 ~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaH 571 (782)
++........+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. .++|+|+|||
T Consensus 158 ----------l~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 158 ----------LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred ----------ChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 3333344557899999999999999999999999999999999999999999999874 3789999999
Q ss_pred Ccchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 572 RLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 572 rl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
+++.+.. ||+|++|++|++++.|+++++..
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9999865 89999999999999999998865
No 299
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1e-38 Score=330.73 Aligned_cols=187 Identities=27% Similarity=0.502 Sum_probs=159.2
Q ss_pred EEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCC---ccccHHHHHhcC
Q 003976 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPAL---FATSIANNILLG 475 (782)
Q Consensus 399 l~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~l---f~~Ti~eNi~~g 475 (782)
|+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++. ..|++++|++|+|.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 356789999999976 457999999876
Q ss_pred CC---------C-CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCC
Q 003976 476 KE---------D-ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545 (782)
Q Consensus 476 ~~---------~-~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsal 545 (782)
.. . ..++++.++++..++.++. .....+||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 31 0 1123456666666654433 2334579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 003976 546 DAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 546 D~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|+.+++.+.+.|+++. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+.
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999999875 5889999999999875 48999999 7999999999998764
No 300
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-39 Score=328.72 Aligned_cols=192 Identities=34% Similarity=0.538 Sum_probs=167.0
Q ss_pred EEEEeEEEEcCCCC-------CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH
Q 003976 377 IEFSEVCFAYPSRP-------HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW 449 (782)
Q Consensus 377 i~~~~v~f~y~~~~-------~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~ 449 (782)
++.+|++..|+.+. -.+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--- 81 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--- 81 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---
Confidence 78899999997542 14899999999999999999999999999999999999999999999999988776
Q ss_pred HHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHh-HHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 450 LREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS-FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~-~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
.+...+++.+.++.+++.+ +..+. ..+|||||||||+||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----------PhelSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRY-----------PHELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----------CcccCchhhhhHHHHHH
Confidence 1123456778887777655 33333 46899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc-Cc
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK-GG 604 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~-~~ 604 (782)
|.-+|+++++||||||||...+..|.+.+.++. .|-|.++|||+++.++. ||||.||..|+|||.|+-+++.++ .-
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999998775 48899999999999987 899999999999999999999986 34
Q ss_pred hhHHH
Q 003976 605 EYAAL 609 (782)
Q Consensus 605 ~y~~l 609 (782)
.|.+.
T Consensus 204 pYTk~ 208 (268)
T COG4608 204 PYTKA 208 (268)
T ss_pred HHHHH
Confidence 56543
No 301
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-38 Score=323.02 Aligned_cols=189 Identities=19% Similarity=0.336 Sum_probs=160.7
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+. ..++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+ ++.++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 789999999964 2355 599999999999999999999999999999999999999999999987643 456999
Q ss_pred EeccCCC-ccccHHHHHhcCCCCC-CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc
Q 003976 457 VSQEPAL-FATSIANNILLGKEDA-SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534 (782)
Q Consensus 457 V~Q~~~l-f~~Ti~eNi~~g~~~~-~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ 534 (782)
++|++.+ |+.|++||+.++.+.. .++++.++++..++.++. ...+.+||||||||++||||++++|+
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLL-----------DEKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhh-----------ccChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999754 6789999999865322 345566666666655443 34567899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHH-hCCCeEEEEecCcchhhhcCEEE
Q 003976 535 ILLLDEATSALDAESELIVQRALEKI-MSNRTTIVVAHRLSTVRDVDTIM 583 (782)
Q Consensus 535 illLDE~tsalD~~~e~~i~~~l~~~-~~~~T~i~iaHrl~~i~~aD~I~ 583 (782)
+|||||||++||+.+++.+.+.|++. .+++|+|++||+++.++.||-|.
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999754 46899999999999999999764
No 302
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-38 Score=334.63 Aligned_cols=211 Identities=20% Similarity=0.304 Sum_probs=172.5
Q ss_pred cEEEEeEEEEcCCC------------------CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEE
Q 003976 376 QIEFSEVCFAYPSR------------------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 437 (782)
Q Consensus 376 ~i~~~~v~f~y~~~------------------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i 437 (782)
+|+++||+..|... ..++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 57777877766431 123899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCcCHHHHHhHceEEeccCCCcc-ccHHHHHhcCC--CCCCHHHHHH----HHHHhhhHhHHhcCCCCccccccC
Q 003976 438 DGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGK--EDASMDRVIE----AAKAANAHSFVEGLPDGYQTQVGE 510 (782)
Q Consensus 438 ~g~di~~~~~~~lR~~i~~V~Q~~~lf~-~Ti~eNi~~g~--~~~~~~~i~~----a~~~a~~~~~i~~lp~G~~t~vge 510 (782)
+|. +++++|++.+++ .|++||+.++. ...+.++..+ +++..+ ++..+..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSE-----------LGEFIYQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcC
Confidence 994 577888887765 59999998742 1233444333 222222 3333444
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCC
Q 003976 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNG 588 (782)
Q Consensus 511 ~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G 588 (782)
...+||||||||++||||++++|+||||||||++||+.+.+.+.+.|.++. .++|+|++||++..+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 567899999999999999999999999999999999999999999998874 58999999999999865 8999999999
Q ss_pred EEEEecChhHHhhcCchhHHHH
Q 003976 589 QVVESGTHVDLISKGGEYAALV 610 (782)
Q Consensus 589 ~ive~G~~~eL~~~~~~y~~l~ 610 (782)
+|++.|+++++....+.|.+..
T Consensus 220 ~i~~~g~~~~~~~~~~~~~~~~ 241 (264)
T PRK13546 220 KLKDYGELDDVLPKYEAFLNDF 241 (264)
T ss_pred EEEEeCCHHHHHHHhHHHHHHH
Confidence 9999999999988755454444
No 303
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.7e-38 Score=320.91 Aligned_cols=173 Identities=36% Similarity=0.559 Sum_probs=146.0
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC--cCHHHHHhHceEEeccC--CCcccc
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWLREQMGLVSQEP--ALFATS 467 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~--~~~~~lR~~i~~V~Q~~--~lf~~T 467 (782)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.. .+...+|+.++||+|+| .+|..|
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 85 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD 85 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence 49999999999999999999999999999999999999999999999999852 23456788999999998 578889
Q ss_pred HHHHHhcCCC--CCCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCC
Q 003976 468 IANNILLGKE--DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 541 (782)
Q Consensus 468 i~eNi~~g~~--~~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~ 541 (782)
++||+.++.. ..+.+ ++.++++..++.++.. ....+||||||||++||||++++|+++|||||
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-----------RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999988531 12222 3444555555544333 33468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcch
Q 003976 542 TSALDAESELIVQRALEKIM-SNRTTIVVAHRLST 575 (782)
Q Consensus 542 tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~ 575 (782)
|++||+.+++.+.+.|+++. +++|+|+|||+++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999998875 47899999999864
No 304
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-38 Score=303.74 Aligned_cols=217 Identities=29% Similarity=0.521 Sum_probs=182.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCc----------
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---------- 445 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~---------- 445 (782)
.++.+|++.+|.+. .||+++||+.++|+.+.|+|.|||||||++++|.=+-.|+.|+|.++|..|+--
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 58899999999753 399999999999999999999999999999999999999999999999887532
Q ss_pred ---CHHHHHhHceEEeccCCCcc-ccHHHHHhcCCC---CCCHH-HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCH
Q 003976 446 ---QLKWLREQMGLVSQEPALFA-TSIANNILLGKE---DASMD-RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG 517 (782)
Q Consensus 446 ---~~~~lR~~i~~V~Q~~~lf~-~Ti~eNi~~g~~---~~~~~-~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSg 517 (782)
.++.+|.+.|+|+|...|.+ .|+.||+.=+.- ..+.+ .+++|- .++.+. |+...-......|||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae------~~L~kV--Gi~ek~~~YP~~LSG 155 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAE------KYLAKV--GIAEKADAYPAHLSG 155 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHH------HHHHHh--CchhhhhcCccccCc
Confidence 25678999999999999997 599999864421 11222 233322 222221 444444455679999
Q ss_pred HHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecC
Q 003976 518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGT 595 (782)
Q Consensus 518 GQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~ 595 (782)
||+||.||||||.-+|+++++|||||||||+--..+.+.++++. .|||.++|||.+...++ +..++.+++|+|-|+|+
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~ 235 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGP 235 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCC
Confidence 99999999999999999999999999999998888999998875 69999999999999988 59999999999999999
Q ss_pred hhHHhhc
Q 003976 596 HVDLISK 602 (782)
Q Consensus 596 ~~eL~~~ 602 (782)
++++..+
T Consensus 236 P~qvf~n 242 (256)
T COG4598 236 PEQVFGN 242 (256)
T ss_pred hHHHhcC
Confidence 9999865
No 305
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=367.72 Aligned_cols=218 Identities=21% Similarity=0.372 Sum_probs=178.5
Q ss_pred cEEEEeEEEEcCCC-CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-CCccEEEECCeeCCCcCH-HHHHh
Q 003976 376 QIEFSEVCFAYPSR-PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-PTSGKILLDGHDLKSLQL-KWLRE 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-~~~G~I~i~g~di~~~~~-~~lR~ 452 (782)
-|+++||++.|+.+ ..++|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 48999999999532 2349999999999999999999999999999999999999 599999999999876543 45677
Q ss_pred HceEEeccC---CCcc-ccHHHHHhcCCCC-C------CHHHHHHHHHHhhhHhHHhcCCCCccc-cccCCCCCCCHHHH
Q 003976 453 QMGLVSQEP---ALFA-TSIANNILLGKED-A------SMDRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGGQK 520 (782)
Q Consensus 453 ~i~~V~Q~~---~lf~-~Ti~eNi~~g~~~-~------~~~~i~~a~~~a~~~~~i~~lp~G~~t-~vge~G~~LSgGQk 520 (782)
.|+||+|++ .+|. .|+.||+.++... . +.++. ...+.+.++.+ |+++ .......+||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 4665 5999999875310 0 11111 11234445444 3332 23455678999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhH
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~e 598 (782)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||++++|++|+|+..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998874 58999999999999865 99999999999999999887
Q ss_pred Hh
Q 003976 599 LI 600 (782)
Q Consensus 599 L~ 600 (782)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 64
No 306
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-38 Score=301.15 Aligned_cols=210 Identities=31% Similarity=0.446 Sum_probs=175.8
Q ss_pred cEEEEeEEEEcCCCCCc--ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH---HH
Q 003976 376 QIEFSEVCFAYPSRPHM--VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WL 450 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~--vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~---~l 450 (782)
-|++++++..-++.... +|++++|.|++||.+|||||||||||||+.++.|+-+|++|+|.+.|+++.+++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 37888888877654333 99999999999999999999999999999999999999999999999999999855 44
Q ss_pred H-hHceEEeccCCCcc-ccHHHHHhcCCCCC---CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHH
Q 003976 451 R-EQMGLVSQEPALFA-TSIANNILLGKEDA---SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 451 R-~~i~~V~Q~~~lf~-~Ti~eNi~~g~~~~---~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiai 525 (782)
| +++|+|+|..+|.. .|-.||+....+-. ..+....| .+.+... |+.-.+.....+||||++||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A------~~lL~~v--GLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGA------KALLEAV--GLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHH------HHHHHHh--CcccccccCccccCchHHHHHHH
Confidence 4 78999999999875 59999998754311 11111111 2223322 66666677778999999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhhcCEEEEEeCCEEEEe
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 593 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~ 593 (782)
|||+...|+||+-||||-+||.+|-..|.+.+-.+. .|.|.|+|||+.+....|||++-|.+|++++.
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999886553 58899999999999999999999999999863
No 307
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=324.73 Aligned_cols=420 Identities=18% Similarity=0.185 Sum_probs=291.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 157 FHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLT-LAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAG 235 (782)
Q Consensus 157 srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~-l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (782)
.|+++|++..-..+++....++.+.+.++....-++....++..++ +..+.+-.++...+.+.+.+..-++++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 5899999988777766555555544433333323333222223333 333333445566666777777778888888888
Q ss_pred HHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCCC
Q 003976 236 KVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILV----RHGDTN 311 (782)
Q Consensus 236 ~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv----~~g~~t 311 (782)
-.-.+...|.+.|.-|+++..+........+...+...+.-...-....+..++-++..++...+-+.-+ ..+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 8888888999999999999888777666666655544333222211111122222322222211111111 234567
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC----C--------CCC-------CCCC
Q 003976 312 GGKAFTTII----NVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSS----E--------RPG-------DDGI 368 (782)
Q Consensus 312 ~G~l~~~~~----~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~----~--------~~~-------~~~~ 368 (782)
..++...+. .++.....++.+.-....+.+-.+-..||-++.+.-.+.. + .+. ++..
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 777665432 2223334455555555666666677778877764311100 0 000 0000
Q ss_pred CCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH
Q 003976 369 TLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK 448 (782)
Q Consensus 369 ~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~ 448 (782)
+..+....|+|++|++.-|++.+.+.+|+||+|+.|+.+.|.||||||||+|++.|.|+++..+|++.--...-.
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~----- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP----- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-----
Confidence 111122469999999999986444778899999999999999999999999999999999999999986442211
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCC-------CCCCHHHHHHHHHHhhhHhHHhcCCCCcccccc-CCCCCCCHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGK-------EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG-EGGTQLSGGQK 520 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~-------~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vg-e~G~~LSgGQk 520 (782)
+.+=||||.|+.=.||+||-+.|.. ..++++++.+.++.+++.+.+.. .+|+|+++- +-...||+||+
T Consensus 501 ---~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEq 576 (659)
T KOG0060|consen 501 ---KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQ 576 (659)
T ss_pred ---CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHH
Confidence 2488999999999999999999962 23678999999999999887765 468997764 66789999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeC
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 587 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~ 587 (782)
||+|.||-+|.+|++-+|||+|||+|.+.|..+-+.+++ .|.|.|-|.||-|.-+.-|.++-|+.
T Consensus 577 QRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 577 QRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 999999999999999999999999999999999988877 48999999999999999999999986
No 308
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=7.3e-38 Score=395.92 Aligned_cols=216 Identities=27% Similarity=0.433 Sum_probs=187.2
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
..|+++|+++.|+++...+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.|+.. +...+|++|
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3599999999996333459999999999999999999999999999999999999999999999999975 567789999
Q ss_pred eEEeccCCCccc-cHHHHHhcCCC--CCCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 455 GLVSQEPALFAT-SIANNILLGKE--DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~--~~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
||++|++.+|+. |++|||.++.. ..+.+ ++.+.++.. |++........+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~v-----------gL~~~~~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDT-----------GLHHKRNEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHH
Confidence 999999999975 99999987531 12222 233333333 3344445566789999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|++.+|+|||||||||+||+.+++.+.+.|++..+|+|+|++||+++.+.. ||||++|++|+++..|+.++|.++
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999998889999999999999865 999999999999999999999876
No 309
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=349.77 Aligned_cols=211 Identities=24% Similarity=0.345 Sum_probs=172.9
Q ss_pred cEEEEeEEEEcCCCCC-cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 376 QIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~-~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
.++++|++|+|+.+.. ++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 5899999999976533 499999999999999999999999999999999999999999999999752
Q ss_pred eEEeccCCCcc-ccHHHHHhcCC--CCCCHHHH----HHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 455 GLVSQEPALFA-TSIANNILLGK--EDASMDRV----IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 455 ~~V~Q~~~lf~-~Ti~eNi~~g~--~~~~~~~i----~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
++.+.+.++. .|++||+.++. ...+.++. .++++.+++.+++ ......||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~l-----------d~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFI-----------YQPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHh-----------hCCcccCCHHHHHHHHHHH
Confidence 2333444444 49999998743 12333333 3444445544443 3345689999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhcCch
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGE 605 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~~~~ 605 (782)
||+.+|++|||||||++||+.++..+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++...-..
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~ 236 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDE 236 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHH
Confidence 9999999999999999999999999999998874 47899999999999865 999999999999999999999876445
Q ss_pred hHHHH
Q 003976 606 YAALV 610 (782)
Q Consensus 606 y~~l~ 610 (782)
|.+.+
T Consensus 237 ~~~~~ 241 (549)
T PRK13545 237 FLKKY 241 (549)
T ss_pred HHHHH
Confidence 55544
No 310
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=7.5e-38 Score=330.97 Aligned_cols=222 Identities=32% Similarity=0.510 Sum_probs=187.8
Q ss_pred cEEEEeEEEEcCCCC-------C--cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC
Q 003976 376 QIEFSEVCFAYPSRP-------H--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ 446 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~-------~--~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~ 446 (782)
-++.+||..+||-+. + .+.+++||+.++||+++|||+|||||||+-.+|+|+.++. |+|.++|.||..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 478899999987421 1 2899999999999999999999999999999999999987 99999999999998
Q ss_pred HHH---HHhHceEEeccCC-Ccc--ccHHHHHhcCC----CCCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCC
Q 003976 447 LKW---LREQMGLVSQEPA-LFA--TSIANNILLGK----EDAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512 (782)
Q Consensus 447 ~~~---lR~~i~~V~Q~~~-lf~--~Ti~eNi~~g~----~~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G 512 (782)
.+. +|+++-+|+|||+ -++ .||.+=|.=|. |..+ ++++.+|++.++++.-.. ....
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~RYP 424 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NRYP 424 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hcCC
Confidence 665 6899999999997 233 48877776553 3333 455677777777665442 2345
Q ss_pred CCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCE
Q 003976 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQ 589 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ 589 (782)
..+|||||||||||||++-+|++++|||||||||-.-+..|.+.|+++. .|-+-++|+|+|..++. ||+|+||.+|+
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gk 504 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCE
Confidence 7899999999999999999999999999999999999999999998774 47899999999999987 89999999999
Q ss_pred EEEecChhHHhhc-CchhHH
Q 003976 590 VVESGTHVDLISK-GGEYAA 608 (782)
Q Consensus 590 ive~G~~~eL~~~-~~~y~~ 608 (782)
|||+|+-+++.++ ...|.+
T Consensus 505 iVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 505 IVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EeeeCCHHHHhcCCCcHHHH
Confidence 9999999999987 445644
No 311
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=9.2e-36 Score=376.97 Aligned_cols=216 Identities=20% Similarity=0.329 Sum_probs=184.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++|++++|+++...+|+|+||+|++||++||+|||||||||++++|.|+..|++|+|.++|.++.+ +....|++||
T Consensus 1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~IG 2015 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMG 2015 (2272)
T ss_pred eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhEE
Confidence 599999999997533459999999999999999999999999999999999999999999999999975 4567788999
Q ss_pred EEeccCCCccc-cHHHHHhcCCC--CCCHHH----HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGKE--DASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~--~~~~~~----i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
|+||++.++.. |++||+.+... ..+.++ +.++++..++.++ ......+||||||||++||||
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~-----------~dk~~~~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLY-----------ADRLAGTYSGGNKRKLSTAIA 2084 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHH
Confidence 99999999864 99999986321 122222 3344444444433 333446899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
|+.+|+||+|||||++||+.+++.+.+.|+++. +|+|+|++||.++.++. ||||++|++|+++..|+.++|.++-
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 999999999999999999999999999999874 58999999999999875 9999999999999999999997763
No 312
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.7e-38 Score=325.97 Aligned_cols=197 Identities=26% Similarity=0.360 Sum_probs=154.5
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
+.++|++.+|.. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----------- 89 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL----------- 89 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----------
Confidence 566777777754 3499999999999999999999999999999999999999999999999876421
Q ss_pred EeccCCC-ccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 457 VSQEPAL-FATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 457 V~Q~~~l-f~~Ti~eNi~~g~~~--~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
.+...+ .+.|++||+.++... .+.++..+.+ ..+.+.+ .|++..++. ..+||||||||++||||++++|
T Consensus 90 -~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~----~~~LSgG~~qrv~laral~~~p 161 (224)
T cd03220 90 -GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKI--DEIIEFS-ELGDFIDLP----VKTYSSGMKARLAFAIATALEP 161 (224)
T ss_pred -cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CChhhhhCC----hhhCCHHHHHHHHHHHHHhcCC
Confidence 111222 346999999876421 2222222211 1112221 233333444 3579999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEec
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESG 594 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G 594 (782)
+++||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 162 ~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 162 DILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999998874 4689999999999886 49999999999998865
No 313
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-38 Score=363.94 Aligned_cols=212 Identities=22% Similarity=0.370 Sum_probs=173.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH-HHHHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~-~~lR~~i 454 (782)
-|+++|+++.|. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.|
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 499999999763 28999999999999999999999999999999999999999999999999876554 4667889
Q ss_pred eEEeccC---CCccc-cHHHHHhcCCCC-----------CCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHH
Q 003976 455 GLVSQEP---ALFAT-SIANNILLGKED-----------ASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGG 518 (782)
Q Consensus 455 ~~V~Q~~---~lf~~-Ti~eNi~~g~~~-----------~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgG 518 (782)
+||+|++ .+|.. |++||+.++... ....+. ...+.+.++.+ |+. -.......+||||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSGG 413 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCChH
Confidence 9999984 57765 999999886320 011111 11123334333 332 1234445679999
Q ss_pred HHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecCh
Q 003976 519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 519 QkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~ 596 (782)
||||++||||++.+|+|||||||||+||+.+...+.+.|+++. +|+|+|+|||++..+. .||+|++|++|++++.++.
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999999998874 5899999999999875 5999999999999998876
Q ss_pred hH
Q 003976 597 VD 598 (782)
Q Consensus 597 ~e 598 (782)
.+
T Consensus 494 ~~ 495 (510)
T PRK09700 494 RD 495 (510)
T ss_pred cc
Confidence 33
No 314
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-38 Score=303.43 Aligned_cols=211 Identities=27% Similarity=0.478 Sum_probs=170.9
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
+..++++.+|++.+..+|+|+|++|.+||+++++||||||||||+|++.||.+|..|+|.+||.+|..-.-+ =|+
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rgv 78 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RGV 78 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----cee
Confidence 456789999998776699999999999999999999999999999999999999999999999988765543 699
Q ss_pred EeccCCCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCce
Q 003976 457 VSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 535 (782)
Q Consensus 457 V~Q~~~lf~-~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~i 535 (782)
|+|++-|+. -|+.||+.||..-..- .++-+..-++.++... |++---.....+||||||||+.|||||..+|+.
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi---~k~~R~~~a~q~l~~V--gL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGI---EKAQRREIAHQMLALV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHh--CcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence 999999998 4999999999642211 1111111222222211 222222344578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchh-hhcCEEEEEe--CCEEEEecChh
Q 003976 536 LLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLK--NGQVVESGTHV 597 (782)
Q Consensus 536 llLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i-~~aD~I~vl~--~G~ive~G~~~ 597 (782)
|+||||.+|||+-+++.+|+.|-++. .|+-+++|||.++.. --|++++||+ .|||++.=+.+
T Consensus 154 LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred EeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999999999999987664 589999999999874 5689999997 47999875543
No 315
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-37 Score=304.17 Aligned_cols=213 Identities=26% Similarity=0.484 Sum_probs=185.1
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+.+|+|++-.++ .+|+++||+++|||.+||+||+|+|||||+++|.|.+.|++|++.++|+++.++....+-++-++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 7889999988654 39999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCC-ccccHHHHHhcCCCCC------CHHH--HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 457 VSQEPAL-FATSIANNILLGKEDA------SMDR--VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 457 V~Q~~~l-f~~Ti~eNi~~g~~~~------~~~~--i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
.||+..| |.-|++|-+.+|+-.. .+++ ..+++.++++..|- +..-..||||++||+.+||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la-----------~R~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA-----------GRDYRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhh-----------ccchhhcCchHHHHHHHHH
Confidence 9999976 8899999999996211 1333 45555566655444 2334689999999999999
Q ss_pred Hhcc------CCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHH
Q 003976 528 AVLR------NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 528 Al~~------~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL 599 (782)
.|.+ ++++|+||||||+||...++.+.+..+++. .|..++.|=|+|+.. ..||||++|.+||++..|++++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9985 345899999999999999999999998875 578999999999975 66999999999999999999998
Q ss_pred hhc
Q 003976 600 ISK 602 (782)
Q Consensus 600 ~~~ 602 (782)
+..
T Consensus 229 lt~ 231 (259)
T COG4559 229 LTD 231 (259)
T ss_pred cCH
Confidence 864
No 316
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.4e-37 Score=359.53 Aligned_cols=216 Identities=19% Similarity=0.325 Sum_probs=174.0
Q ss_pred cEEEEeEEEEcCCC-CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-CccEEEECCeeCCCcCH-HHHHh
Q 003976 376 QIEFSEVCFAYPSR-PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-TSGKILLDGHDLKSLQL-KWLRE 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-~~G~I~i~g~di~~~~~-~~lR~ 452 (782)
-|+++|++++|+.+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. .++|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999532 23499999999999999999999999999999999999995 89999999999876543 56788
Q ss_pred HceEEeccC---CCcc-ccHHHHHhcCCCC-------CCHHHHHHHHHHhhhHhHHhcCCCCccc-cccCCCCCCCHHHH
Q 003976 453 QMGLVSQEP---ALFA-TSIANNILLGKED-------ASMDRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGGQK 520 (782)
Q Consensus 453 ~i~~V~Q~~---~lf~-~Ti~eNi~~g~~~-------~~~~~i~~a~~~a~~~~~i~~lp~G~~t-~vge~G~~LSgGQk 520 (782)
+|+||+|++ .+|. .|++||+.++... ...++. ...+.+.+..+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-----LQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHH-----HHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 999999996 4666 5999999886311 011111 11223334333 2221 23344568999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhH
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~e 598 (782)
||++||||++.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+|+..++-++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998874 58999999999999865 89999999999998776443
No 317
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-37 Score=342.69 Aligned_cols=209 Identities=30% Similarity=0.484 Sum_probs=179.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH-HHHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK-WLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~-~lR~~i 454 (782)
-++++|++++|+. -++|+|+||++.+||.+|++|.+|+|||||+|.|.|.|+|++|+|.+||++..-.++. ....-|
T Consensus 8 ll~~~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 3889999999985 3499999999999999999999999999999999999999999999999999977755 566779
Q ss_pred eEEeccCCCccc-cHHHHHhcCCCCC------CHHHHHHHHHHhhhHhHHhcC--CCCccccccCCCCCCCHHHHHHHHH
Q 003976 455 GLVSQEPALFAT-SIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGL--PDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~~~------~~~~i~~a~~~a~~~~~i~~l--p~G~~t~vge~G~~LSgGQkQRiai 525 (782)
+.|.||+.|+.. ||.|||.+|++.. +..++.+.++. .+..+ +...++.|+ +||+||||-++|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v~----~LsiaqrQ~VeI 156 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLVG----DLSIAQRQMVEI 156 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhhh----hCCHHHHHHHHH
Confidence 999999999976 9999999998642 23444443332 22222 122567776 699999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecC
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGT 595 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~ 595 (782)
|||+..+++|+|||||||+|+....+.+.+.+++++ +|.++|+|||||+.+.. ||||.||.||+.+..++
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999998888888998886 69999999999999855 99999999999998776
No 318
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.5e-37 Score=339.24 Aligned_cols=181 Identities=34% Similarity=0.561 Sum_probs=155.1
Q ss_pred EeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc-cHHHHHhcCCC--CCCH----
Q 003976 409 FVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKE--DASM---- 481 (782)
Q Consensus 409 ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~--~~~~---- 481 (782)
|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .+++|+||+|++.+|.. |++||+.|+.. ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987665 36789999999999975 99999998742 1222
Q ss_pred HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 003976 482 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561 (782)
Q Consensus 482 ~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~ 561 (782)
+++.++++..++.++. .....+||||||||++|||||+++|++||||||||+||+.++..+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFA-----------DRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 2344455554444433 33456899999999999999999999999999999999999999999998875
Q ss_pred C--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 562 S--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 562 ~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3 7999999999998754 999999999999999999999875
No 319
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.3e-37 Score=393.46 Aligned_cols=213 Identities=23% Similarity=0.393 Sum_probs=181.3
Q ss_pred cEEEEeEEEEcCCC--CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC---CCccEEEECCeeCCCcCHHHH
Q 003976 376 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE---PTSGKILLDGHDLKSLQLKWL 450 (782)
Q Consensus 376 ~i~~~~v~f~y~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~---~~~G~I~i~g~di~~~~~~~l 450 (782)
.++++||+++|+.+ ...+|+|+|+++++||++||+||||||||||+++|.|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 37899999999632 2349999999999999999999999999999999999998 78999999999985 257
Q ss_pred HhHceEEeccCCC-ccccHHHHHhcCC----C-CCCHHH----HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 451 REQMGLVSQEPAL-FATSIANNILLGK----E-DASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 451 R~~i~~V~Q~~~l-f~~Ti~eNi~~g~----~-~~~~~~----i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
|+.+|||+|++.+ +..|++||+.++. | +.++++ +.++++..+ |.+-.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLE-------MESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhCCCeeCCCCCCCCHHHh
Confidence 8999999999764 5569999999852 2 123332 344444433 344579999999999999999
Q ss_pred HHHHHHHHhccCCc-eEEEeCCCCCCCHHHHHHHHHHHHHH-hCCCeEEEEecCcchh--hhcCEEEEEeCC-EEEEecC
Q 003976 521 QRIAIARAVLRNPK-ILLLDEATSALDAESELIVQRALEKI-MSNRTTIVVAHRLSTV--RDVDTIMVLKNG-QVVESGT 595 (782)
Q Consensus 521 QRiaiARAl~~~p~-illLDE~tsalD~~~e~~i~~~l~~~-~~~~T~i~iaHrl~~i--~~aD~I~vl~~G-~ive~G~ 595 (782)
||++|||||+.+|+ ||+||||||+||+.+...+++.|+++ .+|+|+|+++|+++.. +.+|+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4689999999999973 679999999997 9999999
Q ss_pred hhHH
Q 003976 596 HVDL 599 (782)
Q Consensus 596 ~~eL 599 (782)
.++.
T Consensus 988 ~~~~ 991 (1394)
T TIGR00956 988 LGEN 991 (1394)
T ss_pred cccc
Confidence 7543
No 320
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.3e-37 Score=357.55 Aligned_cols=210 Identities=21% Similarity=0.367 Sum_probs=173.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH-HHHHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~-~~lR~~i 454 (782)
-|+++|+++ .+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+. +.+|++|
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 489999984 27999999999999999999999999999999999999999999999999987765 3467789
Q ss_pred eEEeccC---CCcc-ccHHHHHhcCCCC--------CCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHHHHH
Q 003976 455 GLVSQEP---ALFA-TSIANNILLGKED--------ASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 455 ~~V~Q~~---~lf~-~Ti~eNi~~g~~~--------~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgGQkQ 521 (782)
|||+|+| .+|. .|++||+.++... .+.++.. ..+.+++..+ |+. .........|||||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGekq 402 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ-----QAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQ 402 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-----HHHHHHHHhc--CCCCCCccCchhhCCHHHHH
Confidence 9999997 3555 5999999875310 1111111 1223444443 332 2345556789999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL 599 (782)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+|+..|+.+++
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999999999999999999875 58899999999998865 899999999999999987765
No 321
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=290.43 Aligned_cols=212 Identities=28% Similarity=0.529 Sum_probs=180.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCe--eCCCcC----HHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH--DLKSLQ----LKW 449 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~--di~~~~----~~~ 449 (782)
.|+++|++|.|.+. .+|-||+|+-+.|+++.+.||||+|||||++.|.=+--|.+|+..|-|. |.++.. ...
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 48999999999754 4999999999999999999999999999999999999999999999775 344332 568
Q ss_pred HHhHceEEeccCCCccc-cHHHHHhcCCC---CCCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 450 LREQMGLVSQEPALFAT-SIANNILLGKE---DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~---~~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
||+.+|+|+|+-.|..- |+-||+.=..- ..+++ +-.+.++.-.+.+|-+++| ..|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhh
Confidence 99999999999999975 99999864321 12222 3345556666667766666 579999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL 599 (782)
|+||||||..+|++|++||||+||||+-...|.+.|+++. .|.|-++|||.....+. |.+++.|++|+|||+|+++-.
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 9999999999999999999999999998888889999886 48999999999999866 899999999999999998765
Q ss_pred h
Q 003976 600 I 600 (782)
Q Consensus 600 ~ 600 (782)
-
T Consensus 229 t 229 (242)
T COG4161 229 T 229 (242)
T ss_pred c
Confidence 4
No 322
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-37 Score=357.05 Aligned_cols=208 Identities=25% Similarity=0.474 Sum_probs=168.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|. ..|+|
T Consensus 2 l~i~~ls~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGAK--PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCCc--EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 7899999999743 4999999999999999999999999999999999999999999999983 35999
Q ss_pred EeccCCCccc-cHHHHHhcCCCCC----------------CHHH---HHHH----------HHHhhhHhHHhcCCCCccc
Q 003976 457 VSQEPALFAT-SIANNILLGKEDA----------------SMDR---VIEA----------AKAANAHSFVEGLPDGYQT 506 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~~~----------------~~~~---i~~a----------~~~a~~~~~i~~lp~G~~t 506 (782)
|+|++.+|.. |++||+.++.... ..+. +.+. -....+.+.+..+ |++.
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~ 146 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPE 146 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCh
Confidence 9999988865 9999998753100 0000 0000 0011233444443 4432
Q ss_pred cc-cCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEE
Q 003976 507 QV-GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMV 584 (782)
Q Consensus 507 ~v-ge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~v 584 (782)
.. .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .++|+|+|||+++.+.. ||+|++
T Consensus 147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEE
Confidence 22 234578999999999999999999999999999999999999999999975 47999999999999865 899999
Q ss_pred EeCCEE-EEecChhHHhh
Q 003976 585 LKNGQV-VESGTHVDLIS 601 (782)
Q Consensus 585 l~~G~i-ve~G~~~eL~~ 601 (782)
|++|++ ++.|++++.++
T Consensus 225 l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 225 LDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EeCCEEEEecCCHHHHHH
Confidence 999999 48999998864
No 323
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-37 Score=356.43 Aligned_cols=212 Identities=21% Similarity=0.350 Sum_probs=173.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC-HHHHHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~-~~~lR~~i 454 (782)
.++++|+++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+ .+.+|+.|
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 4889999842 3899999999999999999999999999999999999999999999999987554 34567889
Q ss_pred eEEeccCC---Ccc-ccHHHHHhcCCCCC--------CHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHHHHH
Q 003976 455 GLVSQEPA---LFA-TSIANNILLGKEDA--------SMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 455 ~~V~Q~~~---lf~-~Ti~eNi~~g~~~~--------~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgGQkQ 521 (782)
+|++|+|. +|. .|+.||+.++.... ...+-. ..+.+++..+ |++ ........+|||||||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA-----ENADRFIRSL--NIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHH-----HHHHHHHHhc--CcccCCccCccccCCHHHHH
Confidence 99999973 665 69999998763210 111111 1223344443 331 2234445689999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL 599 (782)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|++++.|+.+|.
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998875 48999999999999854 899999999999999998876
Q ss_pred h
Q 003976 600 I 600 (782)
Q Consensus 600 ~ 600 (782)
.
T Consensus 484 ~ 484 (501)
T PRK11288 484 T 484 (501)
T ss_pred C
Confidence 5
No 324
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8.7e-37 Score=356.45 Aligned_cols=209 Identities=25% Similarity=0.397 Sum_probs=170.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||+++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..||
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-----------IKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 48999999999721 24999999999999999999999999999999999999999999999862 3699
Q ss_pred EEeccCCCccc-cHHHHHhcCCCC-----------------CCH---------HHHHHHHHHhhhH-------hHHhcCC
Q 003976 456 LVSQEPALFAT-SIANNILLGKED-----------------ASM---------DRVIEAAKAANAH-------SFVEGLP 501 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~-----------------~~~---------~~i~~a~~~a~~~-------~~i~~lp 501 (782)
||+|+|.+|.. |++|||.++... ..+ +++.++++.++.+ +.+..+
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 150 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL- 150 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC-
Confidence 99999999865 999999876311 001 1233443333322 233332
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cC
Q 003976 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VD 580 (782)
Q Consensus 502 ~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD 580 (782)
|++ .......+||||||||++||||++.+|++|||||||++||+++...+.+.|++. ++|+|+|||+++.+.. ||
T Consensus 151 -~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d 226 (552)
T TIGR03719 151 -RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAG 226 (552)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcC
Confidence 332 124456789999999999999999999999999999999999999999999875 3699999999999876 89
Q ss_pred EEEEEeCCEEE-EecChhHHhh
Q 003976 581 TIMVLKNGQVV-ESGTHVDLIS 601 (782)
Q Consensus 581 ~I~vl~~G~iv-e~G~~~eL~~ 601 (782)
+|++|++|+++ ..|++++.++
T Consensus 227 ~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 227 WILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred eEEEEECCEEEEecCCHHHHHH
Confidence 99999999976 7899998654
No 325
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.2e-37 Score=356.79 Aligned_cols=209 Identities=24% Similarity=0.375 Sum_probs=168.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++|++++|++ ...+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+||
T Consensus 6 ~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKVG 73 (556)
T ss_pred EEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 4899999999972 134999999999999999999999999999999999999999999999752 3699
Q ss_pred EEeccCCCccc-cHHHHHhcCCCCC----------------C----------HHHHHHHHHHh-------hhHhHHhcCC
Q 003976 456 LVSQEPALFAT-SIANNILLGKEDA----------------S----------MDRVIEAAKAA-------NAHSFVEGLP 501 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~~----------------~----------~~~i~~a~~~a-------~~~~~i~~lp 501 (782)
||+|+|.+++. |++||+.++.... . .+++.++++.+ .+.+.+..+
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 152 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL- 152 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC-
Confidence 99999999976 9999998763100 0 01111111111 122223322
Q ss_pred CCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cC
Q 003976 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VD 580 (782)
Q Consensus 502 ~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD 580 (782)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||
T Consensus 153 -gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 153 -RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcC
Confidence 232 134455689999999999999999999999999999999999999999999886 3599999999999876 89
Q ss_pred EEEEEeCCEEE-EecChhHHhh
Q 003976 581 TIMVLKNGQVV-ESGTHVDLIS 601 (782)
Q Consensus 581 ~I~vl~~G~iv-e~G~~~eL~~ 601 (782)
+|++|++|+++ ..|++++..+
T Consensus 229 ~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 229 WILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred eEEEEeCCEEEEecCCHHHHHH
Confidence 99999999986 7899998754
No 326
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-37 Score=354.74 Aligned_cols=204 Identities=25% Similarity=0.387 Sum_probs=171.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +++|
T Consensus 319 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIG 385 (530)
T ss_pred eEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEE
Confidence 59999999999743 4999999999999999999999999999999999999999999999983 4699
Q ss_pred EEeccCC--Ccc-ccHHHHHhcCC-CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 456 LVSQEPA--LFA-TSIANNILLGK-EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 456 ~V~Q~~~--lf~-~Ti~eNi~~g~-~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
||+|++. ++. .|++||+.+.. +...++++.++++..++.. ........+||||||||++||||++.
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQ----------DDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCCh----------hHhcCcccccCHHHHHHHHHHHHHhc
Confidence 9999984 443 59999997532 2223445555555544421 12234456899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEE-EecChhHHhhcCc
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVV-ESGTHVDLISKGG 604 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~iv-e~G~~~eL~~~~~ 604 (782)
+|+||||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++|+++ ..|++++++...|
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 99999999999999999999999999886 4599999999999875 8999999999998 8899998876543
No 327
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=6.6e-37 Score=314.85 Aligned_cols=191 Identities=19% Similarity=0.267 Sum_probs=157.7
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEE-ECCeeCCCcCHHHHHhHceEEeccCCCccc-cHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL-LDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIAN 470 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~-i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~-Ti~e 470 (782)
+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 78999999999999999999999999999999999999999997 887543 13467888876 9999
Q ss_pred HHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHH
Q 003976 471 NILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548 (782)
Q Consensus 471 Ni~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~ 548 (782)
||.+... ..+.++..+.+. ....|++.+++.++ .||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY------QLTQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH------HHhChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9987532 233344333221 12345555666554 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhcCchh
Q 003976 549 SELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKGGEY 606 (782)
Q Consensus 549 ~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~~~~y 606 (782)
+++.+.+.|.+..+++|+|++||+++.+. .||+|++|++|++++.|+-++..+..+.|
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFEQY 197 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHH
Confidence 99999998876667789999999999986 59999999999999999999886543333
No 328
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.8e-37 Score=323.82 Aligned_cols=201 Identities=25% Similarity=0.361 Sum_probs=160.8
Q ss_pred EeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEE-----------ECCeeCCCcCHH
Q 003976 380 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL-----------LDGHDLKSLQLK 448 (782)
Q Consensus 380 ~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~-----------i~g~di~~~~~~ 448 (782)
.||+|+|+.. ..+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.++..+
T Consensus 4 ~~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 4789999642 249999994 999999999999999999999999999999999996 889998776544
Q ss_pred HHHh--HceEEeccCCCccccHHHHHhcCCCCC-CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHH
Q 003976 449 WLRE--QMGLVSQEPALFATSIANNILLGKEDA-SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 449 ~lR~--~i~~V~Q~~~lf~~Ti~eNi~~g~~~~-~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiai 525 (782)
..|. .+++++|++.++..++.+|+....... .++++.++++.. |++........+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQL-----------ELRHVLDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHH
Confidence 4443 378888888777666666655432111 123344444443 34444556677999999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCcchhhh-cCEEEEEeCCEEEEec
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G 594 (782)
|||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++| +|++++.|
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 9999999999999999999999999999999998754 7999999999999885 9999999 46666544
No 329
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.1e-36 Score=293.99 Aligned_cols=143 Identities=32% Similarity=0.600 Sum_probs=134.4
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
++++|++++|++. ++|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.+||. ..++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 4789999999753 4999999999999999999999999999999999999999999999994 36999
Q ss_pred EeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceE
Q 003976 457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 536 (782)
Q Consensus 457 V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~il 536 (782)
++| |||||+||++||||++++|+++
T Consensus 68 ~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~il 92 (144)
T cd03221 68 FEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNLL 92 (144)
T ss_pred Ecc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCE
Q 003976 537 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQ 589 (782)
Q Consensus 537 lLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ 589 (782)
||||||++||+.+...+.+.|+++ ++|+|++||+++.+.. ||++++|++||
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999886 5799999999999865 89999999986
No 330
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-37 Score=311.59 Aligned_cols=197 Identities=32% Similarity=0.511 Sum_probs=178.1
Q ss_pred cceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC----cCHHHHHhHceEEeccCCCcc-ccHHH
Q 003976 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS----LQLKWLREQMGLVSQEPALFA-TSIAN 470 (782)
Q Consensus 396 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~----~~~~~lR~~i~~V~Q~~~lf~-~Ti~e 470 (782)
+++|+.+.-..+||-|+|||||||++|+|.|+..|++|.|.+||.-+.+ +.+.--+++||||+||..||. -||+-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 6788888878999999999999999999999999999999999987754 445566889999999999997 59999
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHH
Q 003976 471 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550 (782)
Q Consensus 471 Ni~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e 550 (782)
|++||....+.++..+++..-++...+.+.| .+||||+|||+||+|||+.+|++|+||||.|+||-...
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 9999987777788888888888888887776 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC--CCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 551 LIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 551 ~~i~~~l~~~~~--~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
++++-.|+++.+ +--++.|||.+..+ +-||+|++|++|||...|.-+|.+++.
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 999999998875 56799999999986 559999999999999999999998763
No 331
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.5e-36 Score=318.67 Aligned_cols=194 Identities=24% Similarity=0.398 Sum_probs=158.1
Q ss_pred EEcCCCCCcccccceEEee-----CCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEe
Q 003976 384 FAYPSRPHMVFENLNFSVD-----AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVS 458 (782)
Q Consensus 384 f~y~~~~~~vL~~isl~i~-----~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~ 458 (782)
|+||+. .+.++|++|+++ +||+++|+||||||||||+++|.|+++|++|+|.++|. .|+|++
T Consensus 1 ~~y~~~-~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTM-KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCccc-ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 678743 348999999987 68999999999999999999999999999999999995 599999
Q ss_pred ccCC-CccccHHHHHhcCCCCCC--HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCce
Q 003976 459 QEPA-LFATSIANNILLGKEDAS--MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 535 (782)
Q Consensus 459 Q~~~-lf~~Ti~eNi~~g~~~~~--~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~i 535 (782)
|++. .++.|++||+.+...... .+...++++..+ ++........+||||||||++|||||+++|++
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~-----------l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ-----------IEQILDREVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC-----------CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9997 467899999976533211 122333443333 33334455668999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEE--EecChhHHhh
Q 003976 536 LLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVV--ESGTHVDLIS 601 (782)
Q Consensus 536 llLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~iv--e~G~~~eL~~ 601 (782)
+||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+++..+ ..+++.++..
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 99999999999999999999999875 37999999999999875 9999999776444 4566766653
No 332
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.6e-36 Score=351.03 Aligned_cols=212 Identities=19% Similarity=0.369 Sum_probs=173.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH-HHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~-lR~~i 454 (782)
-|+++|+++ .+|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|.++|.++...+..+ +|+.|
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 489999983 1699999999999999999999999999999999999999999999999998877654 46689
Q ss_pred eEEeccC---CCccc-cHHHHHhcCC----CC-CCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHHHHHHHH
Q 003976 455 GLVSQEP---ALFAT-SIANNILLGK----ED-ASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 455 ~~V~Q~~---~lf~~-Ti~eNi~~g~----~~-~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgGQkQRia 524 (782)
+||+|++ .+|.. |+.+|+.... +. ....+.. ..+.+++..+ |+. .........||||||||++
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHHH
Confidence 9999986 36764 9999986421 10 0111111 1223444443 333 2345556789999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
||||++.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+|+..|+.+++..
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 9999999999999999999999999999999999875 48999999999999865 89999999999999999887753
No 333
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.1e-36 Score=328.54 Aligned_cols=211 Identities=28% Similarity=0.498 Sum_probs=178.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC-HHHHHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~-~~~lR~~i 454 (782)
.+++++++.+||+ -.+++||||+|++||+.||.|++|+|||||++.|.|+|.|++|+|.+||++++=-+ .+..|.-|
T Consensus 4 ~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 4899999999983 34999999999999999999999999999999999999999999999999998555 56788999
Q ss_pred eEEeccCCCccc-cHHHHHhcCCCCC-----CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 455 GLVSQEPALFAT-SIANNILLGKEDA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~~~-----~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
|+|.|.+.|++. |+.|||.+|.+.. +..+..+ .+.+..++. |++-...+.-..||-|||||+.|-+|
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHH
Confidence 999999999987 9999999998642 2222221 122222221 44444445556799999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecC
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGT 595 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~ 595 (782)
||++|++||||||||-|-|..-+.+.+.++++. .|+|+|+|||+|..++. |||+-||.+||++..-.
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999998888999998885 69999999999999877 99999999999875543
No 334
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.3e-36 Score=347.16 Aligned_cols=205 Identities=25% Similarity=0.361 Sum_probs=165.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-CccEEEECCeeCCC-cCHHHHHhH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-TSGKILLDGHDLKS-LQLKWLREQ 453 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-~~G~I~i~g~di~~-~~~~~lR~~ 453 (782)
-|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+...+|++
T Consensus 260 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 59999999999643 499999999999999999999999999999999998876 69999999987642 234457889
Q ss_pred ceEEeccCCCcc---ccHHHHHhcCCC-------CCCH---HHHHHHHHHhhhHhHHhcCCCCccc-cccCCCCCCCHHH
Q 003976 454 MGLVSQEPALFA---TSIANNILLGKE-------DASM---DRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGGQ 519 (782)
Q Consensus 454 i~~V~Q~~~lf~---~Ti~eNi~~g~~-------~~~~---~~i~~a~~~a~~~~~i~~lp~G~~t-~vge~G~~LSgGQ 519 (782)
|+||+|++.++. .|+++|+.++.. .... +++.++++..+ ++. .......+|||||
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGq 406 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILG-----------IDKRTADAPFHSLSWGQ 406 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcC-----------CchhhccCchhhCCHHH
Confidence 999999987643 477777754311 0111 22333333333 332 2344456899999
Q ss_pred HHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC-CC-eEEEEecCcchhhh--cCEEEEEeCCEEEEe
Q 003976 520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NR-TTIVVAHRLSTVRD--VDTIMVLKNGQVVES 593 (782)
Q Consensus 520 kQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~-~~-T~i~iaHrl~~i~~--aD~I~vl~~G~ive~ 593 (782)
|||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++ |+|+|||+++.+.. ||++++|++|+|++.
T Consensus 407 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 407 QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999998753 44 69999999999974 799999999999875
No 335
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-36 Score=343.34 Aligned_cols=212 Identities=20% Similarity=0.366 Sum_probs=170.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH-HHHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK-WLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~-~lR~~i 454 (782)
-|+++|+++.| ..+|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++...+.. .+|+.+
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 48999999975 2399999999999999999999999999999999999999999999999999877654 457789
Q ss_pred eEEeccCC---Ccc-ccHHHH-----HhcCCCC---CCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHHHHH
Q 003976 455 GLVSQEPA---LFA-TSIANN-----ILLGKED---ASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 455 ~~V~Q~~~---lf~-~Ti~eN-----i~~g~~~---~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgGQkQ 521 (782)
+|++|++. +|. .|+.+| +.+..+. .+.++..+ .+.+.+..+ |+. -.......+|||||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHHH
Confidence 99999963 565 477766 4322111 11122211 123344443 221 1235556789999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhH
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~e 598 (782)
|++||||++.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||++++|++|+++..++.++
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999999999999999999998864 5899999999999885 489999999999998886543
No 336
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=294.46 Aligned_cols=213 Identities=29% Similarity=0.467 Sum_probs=186.9
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+.+|.+ ..+|+|+|++||+|++++++||+|+|||||+.++.|+..+++|+|.+||.++.+.+-+.|-+.+++
T Consensus 2 I~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 788999999974 349999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCccc-cHHHHHhcCCCCCC--------HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 457 VSQEPALFAT-SIANNILLGKEDAS--------MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~~~~--------~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
.-|+..+-.- ||||=+.||+=.++ ...+.+|.+.-++.+.= .+.-.+||||||||--||-
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~-----------dryLd~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLS-----------DRYLDELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchH-----------HHhHHhcccchhhhhhhhe
Confidence 9999988765 99999999972221 23355666555443322 1223479999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
.+.+|.+-++||||..+||-.....+++.|+++. -|||+++|=|+...... +|.|+-|++|+++.+|+++|+++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 9999999999999999999999999999998875 38999999999999754 799999999999999999999875
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-35 Score=287.14 Aligned_cols=155 Identities=45% Similarity=0.746 Sum_probs=145.7
Q ss_pred EEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEE
Q 003976 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 457 (782)
Q Consensus 378 ~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V 457 (782)
+++|++|+|++. .+|+++||+|++|++++|+|+||||||||+++|.|+++|++|+|+++|.++.+.....+++.++|+
T Consensus 1 ~~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred CeEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 368999999753 499999999999999999999999999999999999999999999999999888778888999999
Q ss_pred eccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEE
Q 003976 458 SQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 537 (782)
Q Consensus 458 ~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ill 537 (782)
+| ||||||||++||||++.+|++++
T Consensus 79 ~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 79 PQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred ee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 99 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCcchhhh-cCEEEEEeCCE
Q 003976 538 LDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD-VDTIMVLKNGQ 589 (782)
Q Consensus 538 LDE~tsalD~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i~~-aD~I~vl~~G~ 589 (782)
|||||++||.++...+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999988754 5899999999999988 59999999985
No 338
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.1e-34 Score=365.61 Aligned_cols=214 Identities=25% Similarity=0.371 Sum_probs=178.5
Q ss_pred CcEEEEeEEEEcCCC-----------CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC--CccEEEECCee
Q 003976 375 GQIEFSEVCFAYPSR-----------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP--TSGKILLDGHD 441 (782)
Q Consensus 375 g~i~~~~v~f~y~~~-----------~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~--~~G~I~i~g~d 441 (782)
..+.|+||++..+.. ...+|+|+|++++||+++||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 369999999997521 12499999999999999999999999999999999999874 78999999988
Q ss_pred CCCcCHHHHHhHceEEeccCCCccc-cHHHHHhcCC----C-CCCHHH----HHHHHHHhhhHhHHhcCCCCccccccCC
Q 003976 442 LKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGK----E-DASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEG 511 (782)
Q Consensus 442 i~~~~~~~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~----~-~~~~~~----i~~a~~~a~~~~~i~~lp~G~~t~vge~ 511 (782)
++ ...+|+.+|||+|++.++.. |++||+.|+. | +.+.++ +++.++..++. +-.|+.+|..
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-------~~~~~~vg~~ 1015 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-------NLKDAIVGLP 1015 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-------hHhCCccCCC
Confidence 64 34577889999999988764 9999998852 2 223222 44555554443 3357888865
Q ss_pred C-CCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcch--hhhcCEEEEEeC
Q 003976 512 G-TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLST--VRDVDTIMVLKN 587 (782)
Q Consensus 512 G-~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~--i~~aD~I~vl~~ 587 (782)
+ ..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +|+|+|+++|+++. .+.+|++++|++
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 5 5899999999999999999999999999999999999999999999875 58999999999984 467999999996
Q ss_pred -CEEEEecChhH
Q 003976 588 -GQVVESGTHVD 598 (782)
Q Consensus 588 -G~ive~G~~~e 598 (782)
|++++.|+..+
T Consensus 1096 gG~~v~~G~~~~ 1107 (1470)
T PLN03140 1096 GGQVIYSGPLGR 1107 (1470)
T ss_pred CCEEEEECCccc
Confidence 89999999754
No 339
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-34 Score=338.69 Aligned_cols=201 Identities=24% Similarity=0.376 Sum_probs=164.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ ++ .||
T Consensus 324 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i~ 390 (556)
T PRK11819 324 VIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KLA 390 (556)
T ss_pred EEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EEE
Confidence 59999999999753 499999999999999999999999999999999999999999999965 21 599
Q ss_pred EEeccC-CCcc-ccHHHHHhcCCCCC----CHHHHHHHHHHhhhHhHHhcCCCCccc-cccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEP-ALFA-TSIANNILLGKEDA----SMDRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~-~lf~-~Ti~eNi~~g~~~~----~~~~i~~a~~~a~~~~~i~~lp~G~~t-~vge~G~~LSgGQkQRiaiARA 528 (782)
||+|++ .++. -|++||+.++.... .+.+..++++.. |+.. ........||||||||++||||
T Consensus 391 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 391 YVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRF-----------NFKGGDQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhC-----------CCChhHhcCchhhCCHHHHHHHHHHHH
Confidence 999997 5665 49999998864211 122222222222 2221 1234456899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeC-CEEE-EecChhHHhhc
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKN-GQVV-ESGTHVDLISK 602 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~-G~iv-e~G~~~eL~~~ 602 (782)
++.+|++|||||||++||+.+...+.+.|++. . .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999999999999999999999886 3 499999999998865 899999996 7887 47888776543
No 340
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.5e-35 Score=291.36 Aligned_cols=147 Identities=31% Similarity=0.450 Sum_probs=133.0
Q ss_pred EeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEec
Q 003976 380 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQ 459 (782)
Q Consensus 380 ~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q 459 (782)
.||+++|.+ ..+++++ |++++||+++|+||||||||||+++|.|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~--~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGV--FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ 68 (177)
T ss_pred CCeEEEECC--EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence 588999964 3488884 9999999999999999999999999999999999999999963 889998
Q ss_pred cCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEe
Q 003976 460 EPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLD 539 (782)
Q Consensus 460 ~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLD 539 (782)
++. ||||||||++||||++.+|+++|||
T Consensus 69 ~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 69 YID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred cCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 753 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhh-cCEEEEEeCCEEEEe
Q 003976 540 EATSALDAESELIVQRALEKIM-S-NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVES 593 (782)
Q Consensus 540 E~tsalD~~~e~~i~~~l~~~~-~-~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~ 593 (782)
|||++||+++.+.+.+.|+++. + ++|+|+|||+++.++. ||+|++|+++-.+.+
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~ 153 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYG 153 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccce
Confidence 9999999999999999998875 3 4899999999999875 999999998866533
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.7e-34 Score=337.11 Aligned_cols=200 Identities=23% Similarity=0.387 Sum_probs=163.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++|++++|+++ .+|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.+++ ++ .||
T Consensus 322 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i~ 388 (552)
T TIGR03719 322 VIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KLA 388 (552)
T ss_pred EEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EEE
Confidence 49999999999753 499999999999999999999999999999999999999999999955 21 599
Q ss_pred EEeccCC-Ccc-ccHHHHHhcCCCC--CC--HHHHHHHHHHhhhHhHHhcCCCCccc-cccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPA-LFA-TSIANNILLGKED--AS--MDRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~-lf~-~Ti~eNi~~g~~~--~~--~~~i~~a~~~a~~~~~i~~lp~G~~t-~vge~G~~LSgGQkQRiaiARA 528 (782)
||+|++. ++. .|++||+.++.+. .. +.+..+ .+..+ |++. .......+||||||||++||||
T Consensus 389 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 389 YVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA---------YVGRF--NFKGSDQQKKVGQLSGGERNRVHLAKT 457 (552)
T ss_pred EEeCCccccCCCCcHHHHHHhhccccccCcchHHHHH---------HHHhC--CCChhHhcCchhhCCHHHHHHHHHHHH
Confidence 9999973 665 4999999986431 11 112222 23332 3322 2344556899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeC-CEEE-EecChhHHhh
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKN-GQVV-ESGTHVDLIS 601 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~-G~iv-e~G~~~eL~~ 601 (782)
++.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+.. ||+|++|++ |+++ ..|++++..+
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999999873 499999999999875 899999997 5876 5688776543
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.9e-34 Score=342.50 Aligned_cols=199 Identities=30% Similarity=0.479 Sum_probs=163.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||+|+|+++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+||
T Consensus 508 ~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-----------~~ig 575 (718)
T PLN03073 508 IISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-----------VRMA 575 (718)
T ss_pred eEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-----------eeEE
Confidence 59999999999642 24999999999999999999999999999999999999999999999762 3699
Q ss_pred EEeccCCCccccHHHHHhcC----CCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 456 LVSQEPALFATSIANNILLG----KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 456 ~V~Q~~~lf~~Ti~eNi~~g----~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
|++|++. ...++.+|..+. .+..+++++.++++..++.+.. .......||||||||++||||++.
T Consensus 576 yv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 576 VFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred EEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHhc
Confidence 9999873 223555553321 2334566677777666654221 123456899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEE-EecChhHH
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVV-ESGTHVDL 599 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~iv-e~G~~~eL 599 (782)
+|++|||||||++||+.+...+.+.|.+. + .|+|+|||++..+.. ||+|++|++|+++ ..|++++.
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999999999999999999988775 3 499999999999875 8999999999998 67888764
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.5e-34 Score=340.49 Aligned_cols=200 Identities=26% Similarity=0.446 Sum_probs=162.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||+++|+++ .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .||
T Consensus 319 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECCe--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 48999999999743 4999999999999999999999999999999999999999999999 5432 599
Q ss_pred EEeccC-CCccc-cHHHHHhcCCCCC--C--HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 456 LVSQEP-ALFAT-SIANNILLGKEDA--S--MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 456 ~V~Q~~-~lf~~-Ti~eNi~~g~~~~--~--~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
|++|++ .++.. |+.||+.++.+.. + ..++.+.++..++. ++-.++ ....||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~----~~~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFH------PKRAMT----PVKALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCC------HHHHhC----hhhhCCHHHHHHHHHHHHH
Confidence 999986 46654 9999998864322 1 12222222222211 111233 3457999999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEe-CCEEEE-ecChhHHh
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLK-NGQVVE-SGTHVDLI 600 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~-~G~ive-~G~~~eL~ 600 (782)
+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||++..+.. ||+|++|+ +|+|++ .|+|++-+
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9999999999999999999999999999876 4599999999999865 99999998 899876 67887754
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=340.40 Aligned_cols=200 Identities=25% Similarity=0.403 Sum_probs=164.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||+++|+++ .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. .+||
T Consensus 312 ~l~~~~l~~~y~~~--~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGDR--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 49999999999643 4999999999999999999999999999999999999999999999751 1599
Q ss_pred EEeccC--CCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 456 LVSQEP--ALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 456 ~V~Q~~--~lf~-~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
|++|++ .+.. .|+.+|+....+...++++.+.++..++.+ ..+......||||||||++||||++.+
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 999985 3443 388888753222223344444444433311 122334468999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEE-EecChhHHh
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVV-ESGTHVDLI 600 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~iv-e~G~~~eL~ 600 (782)
|++|||||||++||+.+...+.+.|++. . .|+|+|||++..+.. ||+|++|++|+|+ ..|++++..
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999987 3 499999999999865 8999999999997 789998864
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.7e-34 Score=333.41 Aligned_cols=193 Identities=24% Similarity=0.371 Sum_probs=162.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-++++|++++|++ ..|+++||+|++||+++|+||||||||||+++|.|+++|++|+|.++ + .|+
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eEE
Confidence 4899999999963 25999999999999999999999999999999999999999999986 1 599
Q ss_pred EEeccCCCc-cccHHHHHhcCCCCCC-HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 456 LVSQEPALF-ATSIANNILLGKEDAS-MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 456 ~V~Q~~~lf-~~Ti~eNi~~g~~~~~-~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
|++|++.++ +.|++||+.++..... ...+.++++..++.+. ......+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~-----------~~~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERL-----------LDKNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHH-----------HhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998754 5699999998643222 2233444544444332 33445689999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecCh
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~ 596 (782)
+||||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++ ++...|+.
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 99999999999999999999999998853 7999999999998865 999999965 88877773
No 346
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=6.7e-34 Score=282.72 Aligned_cols=154 Identities=25% Similarity=0.402 Sum_probs=128.4
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 471 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eN 471 (782)
++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. ... .|+.++|++|
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q------------ 67 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ------------ 67 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH------------
Confidence 4899999999999999999999999999999996 369999998862 221 2445888887
Q ss_pred HhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC--CceEEEeCCCCCCCHHH
Q 003976 472 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN--PKILLLDEATSALDAES 549 (782)
Q Consensus 472 i~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~--p~illLDE~tsalD~~~ 549 (782)
. +++..++-+.. ....+..+||||||||++||||++++ |+++||||||++||+++
T Consensus 68 -------------~---------~~l~~~~L~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -------------L---------QFLIDVGLGYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -------------H---------HHHHHcCCCcc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 1 22333322211 25667789999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCE
Q 003976 550 ELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQ 589 (782)
Q Consensus 550 e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~ 589 (782)
.+.+.+.|+++. .++|+|+|||+++.++.||+|++|++|+
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 999999998875 5899999999999999999999996643
No 347
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=8.4e-34 Score=300.35 Aligned_cols=226 Identities=30% Similarity=0.489 Sum_probs=184.7
Q ss_pred EEEEeEEEEcCCC--CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCcCHHH
Q 003976 377 IEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSLQLKW 449 (782)
Q Consensus 377 i~~~~v~f~y~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~di~~~~~~~ 449 (782)
++++|++..|... ...+++||||+|++||++|+||+||||||-..+.++|+++- -+|+|.++|.|+-..+...
T Consensus 7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence 7788888877532 22399999999999999999999999999999999999965 4799999999999999998
Q ss_pred HHh----HceEEeccCC-Cccc--cH----HHHHhcCCC---CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCC
Q 003976 450 LRE----QMGLVSQEPA-LFAT--SI----ANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 515 (782)
Q Consensus 450 lR~----~i~~V~Q~~~-lf~~--Ti----~eNi~~g~~---~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~L 515 (782)
+|. +|++++|||. -.|- || .|-|.+.+. .+-.+++.+.++.+++.+- .-.+..-..+|
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPHeL 158 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPHEL 158 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCccc
Confidence 885 7999999994 2231 44 444444321 1224455555555554332 22344556899
Q ss_pred CHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEE
Q 003976 516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE 592 (782)
Q Consensus 516 SgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive 592 (782)
|||||||+.||-||..+|++||=||||.|||..-+..|.+.|+++. .|..+++|||+|..++. ||||+||.+|+|||
T Consensus 159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 9999999999999999999999999999999999999999998874 48999999999999976 89999999999999
Q ss_pred ecChhHHhhc-CchhHHHH
Q 003976 593 SGTHVDLISK-GGEYAALV 610 (782)
Q Consensus 593 ~G~~~eL~~~-~~~y~~l~ 610 (782)
+|+-++|.+. ...|.+..
T Consensus 239 ~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 239 TGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred cCcHHHHhhCCCChHHHHH
Confidence 9999999987 45676654
No 348
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.7e-34 Score=279.24 Aligned_cols=205 Identities=27% Similarity=0.441 Sum_probs=175.0
Q ss_pred CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCC--Ccc-cc
Q 003976 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPA--LFA-TS 467 (782)
Q Consensus 391 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~--lf~-~T 467 (782)
+++|+++||+|+.|++|-|+|.+|+||||+++.|.|-..|++|+|+|||+|+..++.+.--..++-|+|||- .+. -|
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 349999999999999999999999999999999999999999999999999999999999999999999995 454 49
Q ss_pred HHHHHhcCCCC---CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCC
Q 003976 468 IANNILLGKED---ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544 (782)
Q Consensus 468 i~eNi~~g~~~---~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsa 544 (782)
|.||+.+.... .....-...-++..-.+-+..+|.|++-..+.+-.-|||||||=++|+-|.++.|+||+|||-|+|
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAA 178 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhc
Confidence 99999986321 111111222334445667888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh--CCCeEEEEecCcchh-hhcCEEEEEeCCEEEEecC
Q 003976 545 LDAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGT 595 (782)
Q Consensus 545 lD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~ 595 (782)
|||.+...|++.=.+.- .+-|+++|||.++.. ..-+|.++|++|+||-.=+
T Consensus 179 LDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred CCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99998888888766553 357999999999875 4469999999999996533
No 349
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=285.21 Aligned_cols=210 Identities=27% Similarity=0.454 Sum_probs=175.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH-HHHHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~-~~lR~~i 454 (782)
-|+++||+++|.++ ++|+|+|++|++||.-+|+||+|||||||++++.+.++|++|.+.+-|+....-+. .++|++|
T Consensus 31 li~l~~v~v~r~gk--~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 31 LIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred eEEecceEEEECCE--eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence 49999999999764 49999999999999999999999999999999999999999999999999988887 9999999
Q ss_pred eEEeccCC---CccccHHHHHhcCC------C--CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 455 GLVSQEPA---LFATSIANNILLGK------E--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 455 ~~V~Q~~~---lf~~Ti~eNi~~g~------~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
|+|+-+-. .=+.+++|=+.-|. . +.++++..+|-.. .+.. |.....+..-..||-|||||+
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~l---le~~-----g~~~la~r~~~~LS~Ge~rrv 180 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWL---LELL-----GAKHLADRPFGSLSQGEQRRV 180 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHH---HHHc-----chhhhccCchhhcCHhHHHHH
Confidence 99986532 22446776665432 1 3455554444322 2222 444455566679999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC---CCeEEEEecCcchhhhc-CEEEEEeCCEEEEecC
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS---NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~---~~T~i~iaHrl~~i~~a-D~I~vl~~G~ive~G~ 595 (782)
-|||||+++|++|||||||++||...++.+.+.|.++.. +.|+|+|||+.+.+..| ++++.+++|+++.+|.
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999988853 57999999999998776 9999999999999874
No 350
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.6e-34 Score=360.38 Aligned_cols=206 Identities=23% Similarity=0.298 Sum_probs=170.3
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCC----CCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc-c
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY----EPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-S 467 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~----~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~-T 467 (782)
+|+|+|+++++||++||+||||||||||+++|.|.. .|.+|+|.+||.++.+.+ ..+|+.++||+|++.+|.. |
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCCCC
Confidence 999999999999999999999999999999999986 579999999999987654 3467789999999988875 9
Q ss_pred HHHHHhcCC----C-----CCCHHHHHHHHHHhhhHhHHhcCCCCccccccC-CCCCCCHHHHHHHHHHHHhccCCceEE
Q 003976 468 IANNILLGK----E-----DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE-GGTQLSGGQKQRIAIARAVLRNPKILL 537 (782)
Q Consensus 468 i~eNi~~g~----~-----~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge-~G~~LSgGQkQRiaiARAl~~~p~ill 537 (782)
++||+.|+. | +.+.++..+.... .+.+. -.|.+-.||.||+ ....||||||||++||||++.+|+||+
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIAD-VYMAT-YGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HHHHH-cCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 999999852 1 1233332211100 01111 1455567899986 456899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcc-hh-hhcCEEEEEeCCEEEEecChhHHhh
Q 003976 538 LDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLS-TV-RDVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 538 LDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~-~i-~~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
||||||+||+.+...+.+.|+++.+ |+|+|+++|+++ .+ +.+|+|++|++|+++..|+.+++.+
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 9999999999999999999999853 899999999974 45 5589999999999999999998853
No 351
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-33 Score=332.29 Aligned_cols=208 Identities=23% Similarity=0.412 Sum_probs=160.9
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+++|+++ .+|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .|+|
T Consensus 2 i~i~nls~~~g~~--~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGVR--VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred EEEEEEEEEeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 7899999999753 49999999999999999999999999999999999999999999999842 3888
Q ss_pred EeccCCCccccHHHHHhcCCCCC---C-----------HHHHHHHHH----------HhhhHhHHhcCCCCcc-ccccCC
Q 003976 457 VSQEPALFATSIANNILLGKEDA---S-----------MDRVIEAAK----------AANAHSFVEGLPDGYQ-TQVGEG 511 (782)
Q Consensus 457 V~Q~~~lf~~Ti~eNi~~g~~~~---~-----------~~~i~~a~~----------~a~~~~~i~~lp~G~~-t~vge~ 511 (782)
++|++..+..|+.+++.-+.... + ...+..... ...+.+.+..+ |+. ......
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~ 146 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERP 146 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCc
Confidence 88876555556655553221000 0 000000000 01122334433 442 223445
Q ss_pred CCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEE
Q 003976 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQV 590 (782)
Q Consensus 512 G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~i 590 (782)
..+||||||||++|||||+.+|+||||||||++||+++...+.+.|++. +.|+|+|||+...+.. ||+|++|++|++
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 5689999999999999999999999999999999999999999999875 5799999999999865 899999999999
Q ss_pred E-EecChhHHhh
Q 003976 591 V-ESGTHVDLIS 601 (782)
Q Consensus 591 v-e~G~~~eL~~ 601 (782)
+ ..|+|++...
T Consensus 225 ~~~~g~~~~~~~ 236 (638)
T PRK10636 225 FEYTGNYSSFEV 236 (638)
T ss_pred EEecCCHHHHHH
Confidence 7 4798887764
No 352
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=280.52 Aligned_cols=216 Identities=27% Similarity=0.482 Sum_probs=185.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.+++++|+.+|.+ ..+++|+||++++|++.+++||+|+||||.+++|+|+.+|++|+|.++|.+++. ..+++||
T Consensus 2 ~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 3789999999964 349999999999999999999999999999999999999999999999998865 4567899
Q ss_pred EEeccCCCccc-cHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 456 LVSQEPALFAT-SIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
|.|.|--|+.. |+.|-+.|-.. .....|+.+- +..|+.++.- --.-..+-..||-|.+|+|-+--|++++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i--~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEI--VGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhccc--cccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 99999999975 99999998542 3344444433 3567776632 1122445678999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhcCc
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGG 604 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~~~ 604 (782)
|+++|||||+|+|||.+.+.+.+++.+++ .|.|+|+.+||++.++. ||+++.|++|+.|-+|+-++..+..|
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999998875 69999999999999966 99999999999999999999887544
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.4e-32 Score=325.72 Aligned_cols=206 Identities=24% Similarity=0.404 Sum_probs=158.7
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+++|+++ .+|+|+||+|++|+++|||||||||||||+++|.|+++|++|+|.++|.. .+++
T Consensus 4 l~i~~ls~~~~~~--~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~~ 70 (635)
T PRK11147 4 ISIHGAWLSFSDA--PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVAR 70 (635)
T ss_pred EEEeeEEEEeCCc--eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEEE
Confidence 8899999999753 49999999999999999999999999999999999999999999998831 2677
Q ss_pred EeccCCC-ccccHHHHHhcCCCC------------------CCHHHHHHHHH-------------HhhhHhHHhcCCCCc
Q 003976 457 VSQEPAL-FATSIANNILLGKED------------------ASMDRVIEAAK-------------AANAHSFVEGLPDGY 504 (782)
Q Consensus 457 V~Q~~~l-f~~Ti~eNi~~g~~~------------------~~~~~i~~a~~-------------~a~~~~~i~~lp~G~ 504 (782)
++|.+.. ..+++.+++..+... ..++.+..... ...+.+.+..+ |+
T Consensus 71 l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl 148 (635)
T PRK11147 71 LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--GL 148 (635)
T ss_pred eccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--CC
Confidence 7776532 235666665322100 00010100000 01123333333 33
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEE
Q 003976 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIM 583 (782)
Q Consensus 505 ~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~ 583 (782)
. .......||||||||++|||||+.+|+||||||||++||+++...+.+.|+++ +.|+|+|||+...+.. ||+|+
T Consensus 149 ~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i~ 224 (635)
T PRK11147 149 D--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRIV 224 (635)
T ss_pred C--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeEE
Confidence 2 13445689999999999999999999999999999999999999999999886 3699999999999865 89999
Q ss_pred EEeCCEEEE-ecChhHHhh
Q 003976 584 VLKNGQVVE-SGTHVDLIS 601 (782)
Q Consensus 584 vl~~G~ive-~G~~~eL~~ 601 (782)
+|++|+++. .|+|++.+.
T Consensus 225 ~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 225 DLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEECCEEEEecCCHHHHHH
Confidence 999999984 699987654
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.2e-33 Score=353.84 Aligned_cols=206 Identities=22% Similarity=0.379 Sum_probs=170.1
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc-cH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SI 468 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~-Ti 468 (782)
+|+|+|+.|+||++++|+||||||||||+++|.|.++|+ +|+|.+||+++.+... |+.++||+|++.+|.. |+
T Consensus 180 IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred eccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcCcH
Confidence 899999999999999999999999999999999999998 9999999999876543 7889999999988864 99
Q ss_pred HHHHhcCCC----C--------CCHH----------HHH---HHHHHh------hhHhHHh--cCCCCccccccCCC-CC
Q 003976 469 ANNILLGKE----D--------ASMD----------RVI---EAAKAA------NAHSFVE--GLPDGYQTQVGEGG-TQ 514 (782)
Q Consensus 469 ~eNi~~g~~----~--------~~~~----------~i~---~a~~~a------~~~~~i~--~lp~G~~t~vge~G-~~ 514 (782)
+||+.|+.. . .+.+ ++. +++... -.++.++ .|.+-.||.||+.. ..
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 999998521 0 0111 111 111110 0122332 45666789998654 68
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcc--hhhhcCEEEEEeCCEE
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLS--TVRDVDTIMVLKNGQV 590 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~--~i~~aD~I~vl~~G~i 590 (782)
||||||||++||||++.+|++|+|||||++||+.+...+.+.|+++. .|+|+|+++|+.+ ....+|+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 99999999999999999999999999999999999999999999885 4899999999974 4567999999999999
Q ss_pred EEecChhHHhh
Q 003976 591 VESGTHVDLIS 601 (782)
Q Consensus 591 ve~G~~~eL~~ 601 (782)
+++|+.+++..
T Consensus 417 vy~G~~~~~~~ 427 (1470)
T PLN03140 417 VYQGPRDHILE 427 (1470)
T ss_pred EEeCCHHHHHH
Confidence 99999999864
No 355
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-32 Score=262.79 Aligned_cols=210 Identities=28% Similarity=0.481 Sum_probs=171.9
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCC-Ccc-----c
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPA-LFA-----T 466 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~-lf~-----~ 466 (782)
+.+.+||+.++|+++||+|.+|||||||+++|.|..+|++|+|++||+++.-=+-..-.++|-+++|||. -|| |
T Consensus 28 AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iG 107 (267)
T COG4167 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIG 107 (267)
T ss_pred cccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhh
Confidence 8899999999999999999999999999999999999999999999999987777777789999999984 344 2
Q ss_pred cHHH-----HHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCC
Q 003976 467 SIAN-----NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 541 (782)
Q Consensus 467 Ti~e-----Ni~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~ 541 (782)
+|.| |-.+- |....+++.+.++.+++ +|+--+- ....||-|||||+|+||||+-+|+|+|-|||
T Consensus 108 qiLd~PL~l~T~~~-~~~R~~~i~~TL~~VGL------~Pdhan~----~~~~la~~QKQRVaLARALIL~P~iIIaDeA 176 (267)
T COG4167 108 QILDFPLRLNTDLE-PEQRRKQIFETLRMVGL------LPDHANY----YPHMLAPGQKQRVALARALILRPKIIIADEA 176 (267)
T ss_pred hHhcchhhhcccCC-hHHHHHHHHHHHHHhcc------Ccccccc----chhhcCchhHHHHHHHHHHhcCCcEEEehhh
Confidence 3322 11111 12335667777777776 4553222 2457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH--hCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhcC--chhHHHHHhh
Q 003976 542 TSALDAESELIVQRALEKI--MSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG--GEYAALVNLQ 613 (782)
Q Consensus 542 tsalD~~~e~~i~~~l~~~--~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~~--~~y~~l~~~~ 613 (782)
..+||..-+..+.+..-++ ..|-.-|.|+..+-.+++ +|+|+||++|+++|.|+..++++.. ..-+++++..
T Consensus 177 l~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHHHHH
Confidence 9999999888888776555 358899999999999988 7999999999999999999998763 3445555443
No 356
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=254.36 Aligned_cols=193 Identities=28% Similarity=0.460 Sum_probs=162.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCcCHHHHHh
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSLQLKWLRE 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~di~~~~~~~lR~ 452 (782)
-+.++||+.+-|++ ..|.|+||+|.+||++-+.||||||||||+.-+.|.++++ +|++.+|++++..++.. ++
T Consensus 2 ~l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred ceeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 36789999888754 3899999999999999999999999999999999999985 79999999999988755 67
Q ss_pred HceEEeccCCCccc-cHHHHHhcCCCCC-----CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 453 QMGLVSQEPALFAT-SIANNILLGKEDA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 453 ~i~~V~Q~~~lf~~-Ti~eNi~~g~~~~-----~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
++|+.+||++||.- ++-+||.|..|.. .......|+++.+++++..+.| .+||||||.|+|+-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHH
Confidence 99999999999986 9999999987642 2333556666667766666655 58999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHH-HH-hCCCeEEEEecCcchhhhcCEEE
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALE-KI-MSNRTTIVVAHRLSTVRDVDTIM 583 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~-~~-~~~~T~i~iaHrl~~i~~aD~I~ 583 (782)
|+|+..|+.|+||||.|.||..-+..+.+-.- +. ..|--+|.|||+++.+..-.||+
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVi 205 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVI 205 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeee
Confidence 99999999999999999999998877776653 22 24889999999999887544444
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=9.7e-33 Score=322.33 Aligned_cols=193 Identities=24% Similarity=0.344 Sum_probs=157.0
Q ss_pred EeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEE-----------ECCeeCCCcCHH
Q 003976 380 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL-----------LDGHDLKSLQLK 448 (782)
Q Consensus 380 ~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~-----------i~g~di~~~~~~ 448 (782)
++++++|..+ ..+|++++ .+++|++++|+||||||||||+++|.|+++|++|+|. ++|.++.++..+
T Consensus 77 ~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 77 EEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred cCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 4589999632 24999999 9999999999999999999999999999999999998 999998765422
Q ss_pred H--HHhH----ceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 449 W--LREQ----MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 449 ~--lR~~----i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
. .+.+ +.+++|.|.+|.+|++||+.... ..+++.++++..++.+ .....-.+||||||||
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKLDEVVERLGLEN-----------ILDRDISELSGGELQR 220 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHH
Confidence 1 1123 44556677888899999997521 2344555555544432 2233445799999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCC
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNG 588 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G 588 (782)
++||||++++|++||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999988668999999999999865 8999999873
No 358
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.98 E-value=1.5e-32 Score=262.17 Aligned_cols=136 Identities=40% Similarity=0.739 Sum_probs=125.7
Q ss_pred cccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc-cHHHHH
Q 003976 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNI 472 (782)
Q Consensus 394 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~-Ti~eNi 472 (782)
|+|+||+|++|++++|+|+||||||||+++|.|.++|++|+|.+||.++.+.+...+|+.++|++|++.+|.+ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987 69999
Q ss_pred hcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCC
Q 003976 473 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543 (782)
Q Consensus 473 ~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~ts 543 (782)
..++++.++++..++.+ ..++.++.+...||||||||++||||++++|++|||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 34567777877777655 35788888889999999999999999999999999999996
No 359
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=1.2e-31 Score=271.00 Aligned_cols=185 Identities=28% Similarity=0.458 Sum_probs=159.2
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc--cHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT--SIAN 470 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~--Ti~e 470 (782)
+|+||||++++||.++|||++|||||||+++|.|.|+|++|+|.++|. |+..-.-..=|+. |-||
T Consensus 42 aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelTGre 108 (249)
T COG1134 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELTGRE 108 (249)
T ss_pred EecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccchHH
Confidence 999999999999999999999999999999999999999999999994 5544444444543 8999
Q ss_pred HHhcCC--CCCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCC
Q 003976 471 NILLGK--EDAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544 (782)
Q Consensus 471 Ni~~g~--~~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsa 544 (782)
||.+-. ...+ ++.+.+..+-|++.+|+ |.+| .+.|-|++-|+|.|-|.-.+|+||||||..|.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi-------~~Pv----ktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI-------DQPV----KTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh-------hCch----hhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 998632 1122 45567778889999998 3344 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-hCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 545 LDAESELIVQRALEKI-MSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 545 lD~~~e~~i~~~l~~~-~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
.|+.=.+.=.+.+++. .+++|+|+|+|.++.+++ ||++++|++|+|+..|+++|.++
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999776666777777 788999999999999976 99999999999999999999986
No 360
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=4.3e-32 Score=317.59 Aligned_cols=219 Identities=29% Similarity=0.480 Sum_probs=184.3
Q ss_pred CcEEEEeEEEEcCCCC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC---CccEEEECCeeCCCcCHH
Q 003976 375 GQIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP---TSGKILLDGHDLKSLQLK 448 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~---~~G~I~i~g~di~~~~~~ 448 (782)
-+++|+|++..-+..+ +.+|+|||.+++|||..||.||||||||||++.|.|..++ .+|+|++|| +..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG---~~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG---RPRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC---ccCchh
Confidence 4689999999887653 3499999999999999999999999999999999999975 799999999 456778
Q ss_pred HHHhHceEEeccCCCccc-cHHHHHhcCC----CC-CCHHHHHHHHHHhhhHhHHhcCCC--CccccccCC-CCCCCHHH
Q 003976 449 WLREQMGLVSQEPALFAT-SIANNILLGK----ED-ASMDRVIEAAKAANAHSFVEGLPD--GYQTQVGEG-GTQLSGGQ 519 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~----~~-~~~~~i~~a~~~a~~~~~i~~lp~--G~~t~vge~-G~~LSgGQ 519 (782)
.+|+..|||+||..++.. ||+|++.|.. |. .+.++..+. .++.+.+|.- =-||.||.. +..+||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~-----V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRER-----VEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCChhhccceecCCCCCccccch
Confidence 899999999999999987 9999998863 22 133332222 2333333322 258899743 35899999
Q ss_pred HHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcch--hhhcCEEEEEeCCEEEEecCh
Q 003976 520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLST--VRDVDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 520 kQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~--i~~aD~I~vl~~G~ive~G~~ 596 (782)
|+|++||.-++.||+||+||||||+||+.+...+.+.|+++. +|||+|+.=|+++. ....|++++|.+|+++..|+.
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 999999999999999999999999999999999999999875 59999999999986 467899999999999999999
Q ss_pred hHHhh
Q 003976 597 VDLIS 601 (782)
Q Consensus 597 ~eL~~ 601 (782)
+++.+
T Consensus 256 ~~~~~ 260 (613)
T KOG0061|consen 256 RELLE 260 (613)
T ss_pred HHHHH
Confidence 98864
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=99.98 E-value=6.3e-32 Score=320.99 Aligned_cols=221 Identities=25% Similarity=0.339 Sum_probs=165.5
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCC---CCCccEEEECCeeCCC--cC---
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY---EPTSGKILLDGHDLKS--LQ--- 446 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~---~~~~G~I~i~g~di~~--~~--- 446 (782)
..|+++|++|+|+++ .+|+|+||+|++|+++|||||||||||||+++|.|.. .|.+|+|.+.++++.. .+
T Consensus 176 ~~I~i~nls~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 369999999999743 3999999999999999999999999999999999864 5889999865544221 11
Q ss_pred ---------HHHHHhHceEEeccCCCccccHHHHHhcCCC-CCCH----HHHHHHHHHhhh----------HhHHhcCCC
Q 003976 447 ---------LKWLREQMGLVSQEPALFATSIANNILLGKE-DASM----DRVIEAAKAANA----------HSFVEGLPD 502 (782)
Q Consensus 447 ---------~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~-~~~~----~~i~~a~~~a~~----------~~~i~~lp~ 502 (782)
...+++.+++++|+|.+...+..+|...... ..+. +++.++.+..++ .+.+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l-- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL-- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--
Confidence 1224667999999987655555555422110 1111 223333322221 2223322
Q ss_pred Ccc-ccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cC
Q 003976 503 GYQ-TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VD 580 (782)
Q Consensus 503 G~~-t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD 580 (782)
|++ ......-.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||++..+.. ||
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence 332 1122234589999999999999999999999999999999999999999999886 7899999999999876 89
Q ss_pred EEEEEeCCEEE-EecChhHHhh
Q 003976 581 TIMVLKNGQVV-ESGTHVDLIS 601 (782)
Q Consensus 581 ~I~vl~~G~iv-e~G~~~eL~~ 601 (782)
+|++|++|+++ ..|++++...
T Consensus 410 ~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 410 DILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred EEEEEECCEEEEeCCCHHHHHH
Confidence 99999999996 6888876654
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=4.1e-31 Score=301.60 Aligned_cols=209 Identities=30% Similarity=0.507 Sum_probs=168.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++|++++|+.+ ++|+|+||++.+|++++|||++|||||||+++|.|...|++|+|...+. -+|+
T Consensus 3 ~i~~~~ls~~~g~~--~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeCCc--eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 48999999999654 4999999999999999999999999999999999999999999999873 1599
Q ss_pred EEeccCCCccc-cHHHHHhcCCCCCC--HHHHHHHHH-------------------------HhhhHhHHhcCCCCcccc
Q 003976 456 LVSQEPALFAT-SIANNILLGKEDAS--MDRVIEAAK-------------------------AANAHSFVEGLPDGYQTQ 507 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~~~--~~~i~~a~~-------------------------~a~~~~~i~~lp~G~~t~ 507 (782)
|++|++.+.+. |+++.+..|..... ..+++++.. .+.+...+..| |+...
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~ 147 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE 147 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc
Confidence 99999999976 99999988864211 111111110 02222333333 22222
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEe
Q 003976 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLK 586 (782)
Q Consensus 508 vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~ 586 (782)
...-.+||||||-|++|||||+.+||||||||||.+||.++-.-+.+-|.+. +| |+|+|||+-..+.+ |++|+-++
T Consensus 148 -~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 148 -DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEec
Confidence 2233579999999999999999999999999999999999999999999864 45 99999999999977 79999999
Q ss_pred CCEEE-EecChhHHhhc
Q 003976 587 NGQVV-ESGTHVDLISK 602 (782)
Q Consensus 587 ~G~iv-e~G~~~eL~~~ 602 (782)
.|++. ..|+|+.-++.
T Consensus 225 ~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 225 RGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred CCceeEecCCHHHHHHH
Confidence 99875 67888887654
No 363
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=260.07 Aligned_cols=223 Identities=27% Similarity=0.428 Sum_probs=187.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCcCHHH-HHh
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL--YEPTSGKILLDGHDLKSLQLKW-LRE 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~--~~~~~G~I~i~g~di~~~~~~~-lR~ 452 (782)
-++++|++.+-.++ ..+|+++||+|++||+.||.||+|||||||.+.|+|. |++++|+|++||.||.++++++ -|.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 37889999988643 3599999999999999999999999999999999996 6999999999999999999875 477
Q ss_pred HceEEeccCCCccc-cHHHHHhcCCCC---------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 453 QMGLVSQEPALFAT-SIANNILLGKED---------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 453 ~i~~V~Q~~~lf~~-Ti~eNi~~g~~~---------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
-|.+.+|.|.=+.| |+.+=++.+... ...+++.++++..++++.. ++-.|++ .+|||+|.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN~---GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVNE---GFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccCC---CcCcchHHH
Confidence 89999999999998 888877654211 1245677777777776632 2333443 699999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhc--CEEEEEeCCEEEEecChhHH
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDV--DTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~a--D~I~vl~~G~ive~G~~~eL 599 (782)
.-|+-+++-+|++.|||||=|+||..+-+.|-+.+++++ .++++++|||+-..+... |++.||-+|+|+.+|.+ ||
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 999999999999999999999999999999999999886 589999999998887765 99999999999999999 88
Q ss_pred hhc--CchhHHH
Q 003976 600 ISK--GGEYAAL 609 (782)
Q Consensus 600 ~~~--~~~y~~l 609 (782)
... +.-|..+
T Consensus 232 ~~~le~~gy~~~ 243 (251)
T COG0396 232 AEELEEKGYDWL 243 (251)
T ss_pred HHHHHHhchHHh
Confidence 753 2335444
No 364
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.4e-31 Score=257.83 Aligned_cols=214 Identities=26% Similarity=0.472 Sum_probs=182.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECC-eeCCCcCHHHH-HhH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG-HDLKSLQLKWL-REQ 453 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g-~di~~~~~~~l-R~~ 453 (782)
-++++||+.++.+ -.+|+|+||++.+||.-+|+||+|+||||++..|.|--+|+.|+++++| .||..++...+ |.-
T Consensus 5 iL~~~~vsVsF~G--F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFGG--FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEcc--eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 4788999999964 3499999999999999999999999999999999999999999999999 99999997765 677
Q ss_pred ceEEeccCCCccc-cHHHHHhcCCCC--------------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHH
Q 003976 454 MGLVSQEPALFAT-SIANNILLGKED--------------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 518 (782)
Q Consensus 454 i~~V~Q~~~lf~~-Ti~eNi~~g~~~--------------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgG 518 (782)
||-=+|.|..|.. |++||+.+.... ...+++.+.+...+ +.-....-...||-|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~ig-----------L~~~~~~~A~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIG-----------LGDERDRLAALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcc-----------cchhhhhhhhhhccc
Confidence 9999999999987 999999876321 01223444444433 333344445689999
Q ss_pred HHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChh
Q 003976 519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHV 597 (782)
Q Consensus 519 QkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~ 597 (782)
|||++-|+--+.++|++|+||||++++-.+.....-+.|+++...+++++|-|++..++. ||+|-||+.|.|..+|+.+
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 999999999999999999999999999666556677788888889999999999999976 8999999999999999999
Q ss_pred HHhhc
Q 003976 598 DLISK 602 (782)
Q Consensus 598 eL~~~ 602 (782)
|+.++
T Consensus 232 ~v~~d 236 (249)
T COG4674 232 EVQND 236 (249)
T ss_pred HhhcC
Confidence 98764
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.3e-30 Score=267.47 Aligned_cols=191 Identities=19% Similarity=0.290 Sum_probs=127.0
Q ss_pred CcccccceEEeeCCCEEEEeCCCCCcHHHHH-HHHHcCCCCCccEEEEC-C------eeCCCc---CHHHHHh-HceEEe
Q 003976 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTII-SMVQRLYEPTSGKILLD-G------HDLKSL---QLKWLRE-QMGLVS 458 (782)
Q Consensus 391 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~-~ll~~~~~~~~G~I~i~-g------~di~~~---~~~~lR~-~i~~V~ 458 (782)
..+|+|+||+|++||+++|+||||||||||+ ..+. .+|++.+. + ..+..+ ....++. ..++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 3499999999999999999999999999996 4432 13332211 0 011001 0011111 233444
Q ss_pred ccCC-Ccc-----ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccc-cccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 459 QEPA-LFA-----TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 459 Q~~~-lf~-----~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t-~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
|++. .++ +++.+...+...-...++..+. .+.+..+ |+.. .......+||||||||++||||+++
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 4442 111 1222222111100011111111 1223332 3333 3566778999999999999999999
Q ss_pred CC--ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEE------eCCEEEEec
Q 003976 532 NP--KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVL------KNGQVVESG 594 (782)
Q Consensus 532 ~p--~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl------~~G~ive~G 594 (782)
+| ++|||||||++||+.+...+.+.|+++. +|.|+|+|||+++.++.||+|++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 5999999999999999999999998864 589999999999999999999999 999999987
No 366
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.97 E-value=2.6e-27 Score=257.51 Aligned_cols=401 Identities=17% Similarity=0.215 Sum_probs=267.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 157 FHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLT--LL--TLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 232 (782)
Q Consensus 157 srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~--lv--~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~ 232 (782)
+++++|+....+...+...++..-++-++.....+.-.+-... .+ ....+-+-..+.+.+.++..+...+.....+
T Consensus 221 ~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g 300 (728)
T KOG0064|consen 221 NSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKG 300 (728)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhcc
Confidence 4689999888887777666665555433322222221111111 11 1111112223344455555566666666677
Q ss_pred HHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 003976 233 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILV------- 305 (782)
Q Consensus 233 ~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv------- 305 (782)
....+=+..+++-+.|..|++.+.+.++.++..+..............+..-+-++++-- .|-|.-+|
T Consensus 301 ~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKY-----vWsg~GlvmvsiPI~ 375 (728)
T KOG0064|consen 301 YLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKY-----TWSGTGLVMVSIPIL 375 (728)
T ss_pred HHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCceEEEEeeee
Confidence 777788889999999999999999999998887776655444333333322222222211 12222221
Q ss_pred -----HcCCCC---HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccC-------CCCCC
Q 003976 306 -----RHGDTN---GG-----KAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK---ENS-------HSSER 362 (782)
Q Consensus 306 -----~~g~~t---~G-----~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~---~~~-------~~~~~ 362 (782)
..+... .| .+.+.=-.+..+..++..+....-.+++-.+--.|+++.++ +.. ...++
T Consensus 376 ~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~ 455 (728)
T KOG0064|consen 376 TSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEI 455 (728)
T ss_pred ecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCch
Confidence 112111 11 11111112233445677777777777777777778776543 210 00000
Q ss_pred CC-------CCCCCCC-----CCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 363 PG-------DDGITLP-----KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 363 ~~-------~~~~~~~-----~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
.+ .++.+.+ .....|.++||-.--|+. +.+...++|+|++|-.+.|.||+|||||+|.+.|.|+++.
T Consensus 456 ~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~-~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv 534 (728)
T KOG0064|consen 456 LSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG-DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV 534 (728)
T ss_pred hhccCccccccCCcCCccchhhcccceEEecCceeccCc-ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc
Confidence 00 0011000 112349999998888764 4588999999999999999999999999999999999999
Q ss_pred CccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCC-------CCCCHHHHHHHHHHhhhHhHHhcCCCC
Q 003976 431 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-------EDASMDRVIEAAKAANAHSFVEGLPDG 503 (782)
Q Consensus 431 ~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~-------~~~~~~~i~~a~~~a~~~~~i~~lp~G 503 (782)
..|...+--- .+|-|+||.|+.=-||+||-|.|.. .+.+|.++++.++...++..+++ ..|
T Consensus 535 y~g~L~~P~~-----------~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g 602 (728)
T KOG0064|consen 535 YNGLLSIPRP-----------NNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGG 602 (728)
T ss_pred cCCeeecCCC-----------cceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccC
Confidence 8888776442 2599999999998999999999863 24678899999999998865544 456
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 003976 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD 578 (782)
Q Consensus 504 ~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~ 578 (782)
.|.+ -+----||||+|||+++||-.+.+|+--+|||+|||+-.+-|..+.++.++ .|-+.|-||||.+..+.
T Consensus 603 ~da~-~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~--~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 603 WDAV-RDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD--AGISLLSITHRPSLWKY 674 (728)
T ss_pred hhhh-ccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh--cCceEEEeecCccHHHH
Confidence 6544 334457999999999999999999999999999999999999999999876 48899999999987654
No 367
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.2e-30 Score=263.03 Aligned_cols=210 Identities=28% Similarity=0.444 Sum_probs=163.5
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEe-ccCCCc-cccHH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVS-QEPALF-ATSIA 469 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~-Q~~~lf-~~Ti~ 469 (782)
++.+|+||+||+|++++++|++|+||||++|+|.|+.-|++|.|.++|.+-.+=..+.+| ++++|. |...|. .-.+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~-~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH-HHHHHhhhhheeeeechhh
Confidence 489999999999999999999999999999999999999999999999987764444455 455543 332221 11122
Q ss_pred HHHhcCC--CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCH
Q 003976 470 NNILLGK--EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547 (782)
Q Consensus 470 eNi~~g~--~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~ 547 (782)
|-+..-+ -+.++++..+-. ..+.+-| +++..+-..-..||=|||-|.-||-||+++|+||+|||||=+||.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~-----~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERL-----DFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHH-----HHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 2222111 023455444332 2222222 455566666789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhcCchhHHH
Q 003976 548 ESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGEYAAL 609 (782)
Q Consensus 548 ~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l 609 (782)
..+..|.+.+++.. .+.|+++.||.++.|.. ||||++|++|+++..|+.++|.+.-+.|+++
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~ 254 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF 254 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEE
Confidence 99999999998763 57899999999999855 9999999999999999999999886666655
No 368
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=4.9e-30 Score=269.81 Aligned_cols=193 Identities=26% Similarity=0.416 Sum_probs=142.1
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHH-----c-CC----CCCcc-----------EEEECCeeCCCcCH----
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ-----R-LY----EPTSG-----------KILLDGHDLKSLQL---- 447 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~-----~-~~----~~~~G-----------~I~i~g~di~~~~~---- 447 (782)
.|+|+|++||.|..++|+|+||||||||++.++ + +. .|..+ -|.+|..+|..-..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 799999999999999999999999999998653 2 22 13222 36666666543211
Q ss_pred ------HHHHh----------------HceEEeccCC-CccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCc
Q 003976 448 ------KWLRE----------------QMGLVSQEPA-LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 504 (782)
Q Consensus 448 ------~~lR~----------------~i~~V~Q~~~-lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~ 504 (782)
+.+|+ .+.|..++.. +.+.|+.||+.|.......++.. +.+..+ |+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~---------~~L~~v--gL 158 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKL---------QTLCDV--GL 158 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHH---------HHHHHc--CC
Confidence 11111 1334444443 23447777776653211112222 223332 44
Q ss_pred cc-cccCCCCCCCHHHHHHHHHHHHhccC---CceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhc
Q 003976 505 QT-QVGEGGTQLSGGQKQRIAIARAVLRN---PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDV 579 (782)
Q Consensus 505 ~t-~vge~G~~LSgGQkQRiaiARAl~~~---p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~a 579 (782)
+. ..++...+||||||||++|||||.++ |+++||||||++||+++.+.+.+.|+++. +|.|+|+|+|+++.++.|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 44 36788889999999999999999996 79999999999999999999999998875 489999999999999999
Q ss_pred CEEEEE------eCCEEEEecCh
Q 003976 580 DTIMVL------KNGQVVESGTH 596 (782)
Q Consensus 580 D~I~vl------~~G~ive~G~~ 596 (782)
|+|++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999974
No 369
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.6e-29 Score=238.08 Aligned_cols=225 Identities=26% Similarity=0.460 Sum_probs=178.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECC-----eeCCCcCHHH-
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG-----HDLKSLQLKW- 449 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g-----~di~~~~~~~- 449 (782)
-++++++|..|.++ .--+|+||++.|||..+|||+||||||||+++|.+-+.|+.|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 36788999999643 478999999999999999999999999999999999999999999865 3444444333
Q ss_pred ---HHhHceEEeccCC--Ccc-----ccHHHHHh-cCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHH
Q 003976 450 ---LREQMGLVSQEPA--LFA-----TSIANNIL-LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 518 (782)
Q Consensus 450 ---lR~~i~~V~Q~~~--lf~-----~Ti~eNi~-~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgG 518 (782)
+|..-|+|.|+|- |-. +.|-|-+. .|.. .+-.|.+ .+.+|+++..- ..+.+.+....+|||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R--HYG~iR~-----~a~~WL~~VEI-~~~RiDD~PrtFSGG 155 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR--HYGNIRA-----EAQDWLEEVEI-DLDRIDDLPRTFSGG 155 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhh--hhhhHHH-----HHHHHHHhccc-CcccccCcccccchH
Confidence 4566899999993 111 12222211 1211 1223332 34677776543 346788889999999
Q ss_pred HHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecC
Q 003976 519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGT 595 (782)
Q Consensus 519 QkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~ 595 (782)
++||+.|||-|+..|+++++||||-+||..-++.+.+.++.+-. +-.+|+|||.|...+- +||..||++|+++|+|-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GL 235 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccc
Confidence 99999999999999999999999999999999999999988753 6799999999998875 89999999999999999
Q ss_pred hhHHhhc-CchhHHHH
Q 003976 596 HVDLISK-GGEYAALV 610 (782)
Q Consensus 596 ~~eL~~~-~~~y~~l~ 610 (782)
.+..+.. ...|.++.
T Consensus 236 TDrvLDDP~hPYTQLL 251 (258)
T COG4107 236 TDRVLDDPHHPYTQLL 251 (258)
T ss_pred ccccccCCCCchHHHH
Confidence 9988876 45677765
No 370
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=4.1e-28 Score=277.05 Aligned_cols=202 Identities=28% Similarity=0.441 Sum_probs=172.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-++++|++++|+++ ..+++++||.|++|+++|||||+|+|||||+++|.|...|.+|+|.++-. + +||
T Consensus 321 vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~ig 388 (530)
T COG0488 321 VLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------KIG 388 (530)
T ss_pred eEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------EEE
Confidence 48999999999754 45999999999999999999999999999999999999999999998663 2 599
Q ss_pred EEeccC-CCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 456 LVSQEP-ALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 456 ~V~Q~~-~lf~-~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
|.+|+. .++. .|+.|++.-+.|+..+.++...+...+....- ..++| ..||||||-|+.||+.++.+|
T Consensus 389 yf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~------~~~~v----~~LSGGEk~Rl~La~ll~~~p 458 (530)
T COG0488 389 YFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED------QEKPV----GVLSGGEKARLLLAKLLLQPP 458 (530)
T ss_pred EEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH------HhCch----hhcCHhHHHHHHHHHHhccCC
Confidence 999998 4454 39999999887765677777777665553322 23333 479999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEEe-cChhHHhhc
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVES-GTHVDLISK 602 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~-G~~~eL~~~ 602 (782)
.+|||||||..||.++...+.++|.+. .-|+|+|||+-..+.. |++|+++++ ++.+. |+|++-.+.
T Consensus 459 NvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 459 NLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999999999999999999999875 3499999999999977 899999999 77766 888876654
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=3.3e-29 Score=254.43 Aligned_cols=164 Identities=25% Similarity=0.315 Sum_probs=134.4
Q ss_pred ccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC---------ccEEEECCeeCCCcCHHHHHhHceEEeccCCCcc
Q 003976 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---------SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA 465 (782)
Q Consensus 395 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~---------~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~ 465 (782)
+++++++++| +++|+||||||||||+++|.++..|. .|++.++|.++.... .+.+|++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPA---NFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCC---ceEEEEEEEEcCCCc-
Confidence 6789999999 99999999999999999999998665 346888888775422 467899999999888
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc----cCCceEEEeCC
Q 003976 466 TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL----RNPKILLLDEA 541 (782)
Q Consensus 466 ~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~----~~p~illLDE~ 541 (782)
|+.. ..+++.++++. ++-.+ .....||||||||++||||+. ++|+++|||||
T Consensus 89 --------~~~~--~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSII--SQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeEE--ehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 3321 23444444433 22223 344679999999999999986 57799999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeC
Q 003976 542 TSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 587 (782)
Q Consensus 542 tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~ 587 (782)
|++||+.+...+.+.|+++.++.|+|+|||+++.++.||+++.|..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999998778999999999999999999999854
No 372
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-28 Score=237.77 Aligned_cols=188 Identities=21% Similarity=0.426 Sum_probs=159.3
Q ss_pred EEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEE
Q 003976 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 457 (782)
Q Consensus 378 ~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V 457 (782)
+.+|++..-.. ...+.++||++.+||.+-|+||+|||||||+++|.|+.+|++|+|.++|.++.... +..++.+-|.
T Consensus 4 ~a~~L~~~R~e--~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~yL 80 (209)
T COG4133 4 EAENLSCERGE--RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLYL 80 (209)
T ss_pred hhhhhhhccCc--ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHHh
Confidence 44555554332 34999999999999999999999999999999999999999999999999988754 3457888999
Q ss_pred eccCCCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 458 SQEPALFAT-SIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 458 ~Q~~~lf~~-Ti~eNi~~g~~---~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
...|-+=.. |+.||+.|-.+ ..+.+.+++|+..+++.++. |.+++ +||-|||.|+||||-++..+
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~-------dlp~~----~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-------DLPVG----QLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccc-------ccchh----hcchhHHHHHHHHHHHcCCC
Confidence 998888765 99999999653 14578899999999997764 34443 79999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHH-hCCCeEEEEecCcchhhhc
Q 003976 534 KILLLDEATSALDAESELIVQRALEKI-MSNRTTIVVAHRLSTVRDV 579 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~-~~~~T~i~iaHrl~~i~~a 579 (782)
|+.|||||++|||.+++..+...+... .+|-.||..||..--+..+
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~a 196 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIASA 196 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCcc
Confidence 999999999999999999999888655 4678999999998766544
No 373
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.96 E-value=3.8e-25 Score=230.68 Aligned_cols=272 Identities=19% Similarity=0.283 Sum_probs=232.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 53 FLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRL 132 (782)
Q Consensus 53 ~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~ 132 (782)
+++++++++.++..++.|++++.++|.+.... .. .........+.++++.++.........+...+.+.++..++|.
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGN-SD--NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRK 78 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTT-SC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888889999999999864322 11 1112222222222333344444455555567889999999999
Q ss_pred HHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 133 KYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVA 212 (782)
Q Consensus 133 ~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~~~ 212 (782)
++++|++++|.+||++ .++|++++|+++|++.+++.+...+..++..+..++++++++++.+|+++++++++.|+..++
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~ 157 (275)
T PF00664_consen 79 RLFEKLLRLPYSYFDK-NSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLI 157 (275)
T ss_dssp HHHHHHHHSHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhh-hcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhh
Confidence 9999999999999999 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 213 GGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 292 (782)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 292 (782)
...+.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+...++..++..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (275)
T PF00664_consen 158 SFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYL 237 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989888888889
Q ss_pred HHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHH
Q 003976 293 AWALLLWYAGIL-VRHGDTNGGKAFTTIINVIFSGFA 328 (782)
Q Consensus 293 ~~~~~l~~G~~l-v~~g~~t~G~l~~~~~~~~~~~~~ 328 (782)
..++++++|+++ +.+|.+|+|++++++.+......|
T Consensus 238 ~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 238 SIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 899999999999 999999999999887776665554
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=1.7e-28 Score=252.40 Aligned_cols=192 Identities=21% Similarity=0.240 Sum_probs=145.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEee-CCCEEEEeCCCCCcHHHHHHHHH-cCCCCCccEEEECCeeCCCcCHHHHHhH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVD-AGKTFAFVGPSGSGKSTIISMVQ-RLYEPTSGKILLDGHDLKSLQLKWLREQ 453 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~-~G~~vaivG~sGsGKSTl~~ll~-~~~~~~~G~I~i~g~di~~~~~~~lR~~ 453 (782)
.|+++|+. +|.++ ++++|+.. +|++++|+||||||||||+++|. .+|.+..+....+ .....+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 58899988 77543 46677654 58999999999999999999999 5777776666654 22233444455677
Q ss_pred ceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCC-ccccccCCCCCCCHHHHHHHHHHHHhcc-
Q 003976 454 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDG-YQTQVGEGGTQLSGGQKQRIAIARAVLR- 531 (782)
Q Consensus 454 i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G-~~t~vge~G~~LSgGQkQRiaiARAl~~- 531 (782)
|++++|++...- .++++. ..+.+++.+... ++.| +++.+...+.+||||||||++||||++.
T Consensus 78 v~~~f~~~~~~~----~~~r~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 78 VSFTFQLGGKKY----RVERSR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEEECCeEE----EEEEec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 999999984322 222232 345555544331 2223 5566677788999999999999999974
Q ss_pred ---------CCceEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCcchhhh-cCEEEEEeCCEE
Q 003976 532 ---------NPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD-VDTIMVLKNGQV 590 (782)
Q Consensus 532 ---------~p~illLDE~tsalD~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i~~-aD~I~vl~~G~i 590 (782)
+|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|-+
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999988865 8899999999998865 799999999853
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=4.9e-28 Score=253.93 Aligned_cols=192 Identities=26% Similarity=0.314 Sum_probs=137.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHc----------------CCCCCcc------
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR----------------LYEPTSG------ 433 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~----------------~~~~~~G------ 433 (782)
.|+++|. .+|.+ ..++++++ |++++|+||||||||||+++|.+ +..+.+|
T Consensus 3 ~i~~~nf-ksy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQGF-KSYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeCc-cCccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 3556653 13543 23778876 88999999999999999999983 4445555
Q ss_pred --EEEECCeeCCCc---CHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHH--hcCCCCcc-
Q 003976 434 --KILLDGHDLKSL---QLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFV--EGLPDGYQ- 505 (782)
Q Consensus 434 --~I~i~g~di~~~---~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i--~~lp~G~~- 505 (782)
+|.+++.+-... +...+++++++++|++.++. ...+.+++..+++..++.+.- ..+|+|..
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~-----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~ 143 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK-----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKIN 143 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC-----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchH
Confidence 555555321110 11234566777777765543 234566777777666554321 01233322
Q ss_pred ------ccccCCCCCCCHHHHHHHHHHHHhc----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcch
Q 003976 506 ------TQVGEGGTQLSGGQKQRIAIARAVL----RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLST 575 (782)
Q Consensus 506 ------t~vge~G~~LSgGQkQRiaiARAl~----~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~ 575 (782)
....+++..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|+++.+++|+|+++|+.+.
T Consensus 144 ~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~ 223 (243)
T cd03272 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL 223 (243)
T ss_pred HhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 2345778899999999999999996 468999999999999999999999999998778889999999888
Q ss_pred hhhcCEEEEEe
Q 003976 576 VRDVDTIMVLK 586 (782)
Q Consensus 576 i~~aD~I~vl~ 586 (782)
.+.||+|++|+
T Consensus 224 ~~~~d~i~~l~ 234 (243)
T cd03272 224 LEVADKFYGVK 234 (243)
T ss_pred HhhCCEEEEEE
Confidence 88899999995
No 376
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=3.9e-27 Score=287.09 Aligned_cols=221 Identities=23% Similarity=0.418 Sum_probs=190.7
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCc-CHHHHHhH
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL-QLKWLREQ 453 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~-~~~~lR~~ 453 (782)
..+..+|++..|+.+.. +.+++|+.|++||+.++.|++||||||+++++.|...|++|++.++|.++..- +....|++
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 35889999999986544 89999999999999999999999999999999999999999999999999764 55579999
Q ss_pred ceEEeccCCCccc-cHHHHHhcCC--CCCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 454 MGLVSQEPALFAT-SIANNILLGK--EDASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 454 i~~V~Q~~~lf~~-Ti~eNi~~g~--~~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
+||+||+..|+.. |.||.+.+-. .+... +.+++.++..++.+.. ++++ .++|||+|.|+++|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~-------~~~~----~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYA-------NKQV----RTYSGGNKRRLSFA 710 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhh-------ccch----hhCCCcchhhHHHH
Confidence 9999999999986 9999998743 12222 2355566666655544 4443 48999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCC-CeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhcCc
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN-RTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGG 604 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~-~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~~~ 604 (782)
-|++.+|++++|||||+++||.+++.+.+.|++++++ +.+|+.||-++..+. |||+.+|.+|++..-|+.++|..+-|
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 9999999999999999999999999999999999875 499999999999977 99999999999999999999987744
Q ss_pred hhH
Q 003976 605 EYA 607 (782)
Q Consensus 605 ~y~ 607 (782)
.++
T Consensus 791 ~gy 793 (885)
T KOG0059|consen 791 SGY 793 (885)
T ss_pred CcE
Confidence 443
No 377
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-27 Score=226.41 Aligned_cols=201 Identities=28% Similarity=0.401 Sum_probs=144.4
Q ss_pred EEEEeEEEEcCC--CC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECC----eeCCCcCH
Q 003976 377 IEFSEVCFAYPS--RP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG----HDLKSLQL 447 (782)
Q Consensus 377 i~~~~v~f~y~~--~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g----~di~~~~~ 447 (782)
+..+||+.++.- +. -+||+|+||+++.||++++=||||+||||+++.|-+-|.|++|+|.+.- .|+-...+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 667788766621 11 2399999999999999999999999999999999999999999999843 34444443
Q ss_pred H----HHHhHceEEeccCCCccc-----cHHHHH-hcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCH
Q 003976 448 K----WLREQMGLVSQEPALFAT-----SIANNI-LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG 517 (782)
Q Consensus 448 ~----~lR~~i~~V~Q~~~lf~~-----Ti~eNi-~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSg 517 (782)
. --|+.||||+|---...- -+.|-+ ..|-+ .+.-... .+.+..- .++|+-+... -..++||
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~---~~~a~~~--a~~Ll~r-LnlperLW~L---aPaTFSG 155 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP---REVARAK--AADLLTR-LNLPERLWSL---APATFSG 155 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC---HHHHHHH--HHHHHHH-cCCCHHHhcC---CCcccCC
Confidence 3 336789999995322221 122322 22322 2211111 1111111 1344443322 2468999
Q ss_pred HHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEe
Q 003976 518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLK 586 (782)
Q Consensus 518 GQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~ 586 (782)
|++||+.|||.++-|-|||+|||||++||+.+++.+.+.|++.. +|..+|=|=|+-+.=+. |||++-|.
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 99999999999999999999999999999999999999998764 68899999999766544 79998775
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=1.5e-26 Score=243.99 Aligned_cols=181 Identities=21% Similarity=0.297 Sum_probs=137.4
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCCCC-ccEEEECCe-eCCCcC-H-HHHHhHceEEeccCC---------Cc-cccHH
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYEPT-SGKILLDGH-DLKSLQ-L-KWLREQMGLVSQEPA---------LF-ATSIA 469 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~~~-~G~I~i~g~-di~~~~-~-~~lR~~i~~V~Q~~~---------lf-~~Ti~ 469 (782)
..+++||||||||||||+.+|.+.+.|. .|+++..|. |+-... . ..-+.++++++|++. +. .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999886 568888886 432111 1 122458999999962 22 34888
Q ss_pred HHHhcCCC--------CCCHHHHHHHHHHhhhH----hHHhcCCCCc-------cccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 470 NNILLGKE--------DASMDRVIEAAKAANAH----SFVEGLPDGY-------QTQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 470 eNi~~g~~--------~~~~~~i~~a~~~a~~~----~~i~~lp~G~-------~t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
+||..+.. ....+++.++++..++. .|+ +|+|- .........+||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~--i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFL--IMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEE--EeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 88766531 12346677777776653 010 11110 02334566789999999999999997
Q ss_pred ----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEe
Q 003976 531 ----RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLK 586 (782)
Q Consensus 531 ----~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~ 586 (782)
.+|+++||||||++||+.+...+.+.|+++.+|.|+|+|||+.+.++.||+|+-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999999888999999999999999999998774
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=4.5e-26 Score=232.74 Aligned_cols=163 Identities=25% Similarity=0.260 Sum_probs=131.2
Q ss_pred ceEEeeCCCEEEEeCCCCCcHHHHHHHHH----cCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccC-----CCccc-
Q 003976 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQ----RLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEP-----ALFAT- 466 (782)
Q Consensus 397 isl~i~~G~~vaivG~sGsGKSTl~~ll~----~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~-----~lf~~- 466 (782)
.++++.+| +++|+||||||||||+.+|. |...|..|.+..+...+. ....+..|++++|++ .++..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999994 888898887762222222 233566899999998 44443
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH------HHHHHHhccCCceEEEeC
Q 003976 467 SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR------IAIARAVLRNPKILLLDE 540 (782)
Q Consensus 467 Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR------iaiARAl~~~p~illLDE 540 (782)
|+.||+.++. .+++.+.+ .+...+||+||||| ++||||+..+|+++||||
T Consensus 92 ~~~~~~~~~~----~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCH----QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeec----hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 9999998752 23332222 44557899999996 799999999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHHhC--CCeEEEEecCcchhhhcCEEEEEeC
Q 003976 541 ATSALDAESEL-IVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKN 587 (782)
Q Consensus 541 ~tsalD~~~e~-~i~~~l~~~~~--~~T~i~iaHrl~~i~~aD~I~vl~~ 587 (782)
||++||+.+.. .+.+.|+++.+ ++|+|+|||.++.+..||+|++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999998 99999988765 7899999999999999999999965
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=1.8e-26 Score=236.87 Aligned_cols=185 Identities=19% Similarity=0.228 Sum_probs=139.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHH-hHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR-EQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR-~~i 454 (782)
.|+++|.- +|.+. .+++++++ ++++|+|||||||||++++|. +++|.+. ...| +++
T Consensus 5 ~l~l~nfk-~~~~~--~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAGE--QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKKL 61 (212)
T ss_pred EEEEECcc-cCCCC--eeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhhH
Confidence 47777775 67532 38999988 899999999999999999997 3355443 2334 679
Q ss_pred eEEeccCCCccc-cHHHHHhcCCCCCCHHHH-----HHHHHH----hhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 455 GLVSQEPALFAT-SIANNILLGKEDASMDRV-----IEAAKA----ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i-----~~a~~~----a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
++++|+..+++. |.++++.+.......+.. ...... .+-...+..||++.++.++ .||+|||||++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~----~lS~G~~~r~~ 137 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS----NLSGGEKTLSS 137 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh----hcCHHHHHHHH
Confidence 999999887765 777776655321111100 000000 0112244567888887654 79999999999
Q ss_pred HHHHhcc----CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeC
Q 003976 525 IARAVLR----NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 587 (782)
Q Consensus 525 iARAl~~----~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~ 587 (782)
||||++. +|++++|||||++||+.+...+.+.++++.++.|+|+|||+.+..+.||+|++|..
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999963 58999999999999999999999999998888999999999888888999999964
No 381
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=7.9e-25 Score=274.05 Aligned_cols=213 Identities=22% Similarity=0.348 Sum_probs=157.3
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHH---------HHHcCCCCCcc--------EEEEC
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIIS---------MVQRLYEPTSG--------KILLD 438 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~---------ll~~~~~~~~G--------~I~i~ 438 (782)
.++++|++. ..|+|+||+|++|++++|+|+||||||||++ +|.|...+..+ -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 588888762 2799999999999999999999999999999 55554333111 23455
Q ss_pred CeeCCCcC----------HHHHH---------hHce-----EEecc------------------C---------------
Q 003976 439 GHDLKSLQ----------LKWLR---------EQMG-----LVSQE------------------P--------------- 461 (782)
Q Consensus 439 g~di~~~~----------~~~lR---------~~i~-----~V~Q~------------------~--------------- 461 (782)
-.++..-. .+.+| +..| +.+|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 54443211 12445 2222 22331 1
Q ss_pred -----CCccc-cHHHHHhcCCCCC-----CHHHHHHHHHHhhhHhHHhcCCCCcccc-ccCCCCCCCHHHHHHHHHHHHh
Q 003976 462 -----ALFAT-SIANNILLGKEDA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQ-VGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 462 -----~lf~~-Ti~eNi~~g~~~~-----~~~~i~~a~~~a~~~~~i~~lp~G~~t~-vge~G~~LSgGQkQRiaiARAl 529 (782)
..+.+ ||.||+.++..++ +.+++.+.++ .+..+ |++.. .++...+||||||||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 13444 8999998875322 1233333331 22222 66654 6888899999999999999999
Q ss_pred c---cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEEe------CCEEEEecChhHH
Q 003976 530 L---RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLK------NGQVVESGTHVDL 599 (782)
Q Consensus 530 ~---~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~------~G~ive~G~~~eL 599 (782)
+ ++|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|+|+++.++.||+|++|+ +|+++++|+++++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 8 6999999999999999999999999999875 5899999999999998899999996 8999999999999
Q ss_pred hhcC
Q 003976 600 ISKG 603 (782)
Q Consensus 600 ~~~~ 603 (782)
....
T Consensus 905 ~~~~ 908 (1809)
T PRK00635 905 IHLH 908 (1809)
T ss_pred Hhcc
Confidence 8643
No 382
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=4.7e-25 Score=266.14 Aligned_cols=104 Identities=28% Similarity=0.522 Sum_probs=94.3
Q ss_pred Cccc-cccCCCCCCCHHHHHHHHHHHHhccCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh
Q 003976 503 GYQT-QVGEGGTQLSGGQKQRIAIARAVLRNP---KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR 577 (782)
Q Consensus 503 G~~t-~vge~G~~LSgGQkQRiaiARAl~~~p---~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~ 577 (782)
|++. ..+....+||||||||++|||||+++| +++||||||++||+.+...+.+.|+++. +|+|+|+|+|+++.++
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4543 367888999999999999999999999 9999999999999999999999999875 5899999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChhHHhhcCchh
Q 003976 578 DVDTIMVL------KNGQVVESGTHVDLISKGGEY 606 (782)
Q Consensus 578 ~aD~I~vl------~~G~ive~G~~~eL~~~~~~y 606 (782)
.||+|++| ++|+|+++|+++++.+....|
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 99999999 799999999999998765443
No 383
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=8.9e-25 Score=243.89 Aligned_cols=212 Identities=23% Similarity=0.403 Sum_probs=174.9
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH-HHHHhHce
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQMG 455 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~-~~lR~~i~ 455 (782)
++++|++..- .++|+||++.+||+++|.|--|||+|-++.+|.|..++.+|+|.+||++++--++ +..+.-|+
T Consensus 264 l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~ 337 (500)
T COG1129 264 LEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337 (500)
T ss_pred EEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCE
Confidence 5677766421 5789999999999999999999999999999999999999999999999887764 48899999
Q ss_pred EEeccC---CCc-cccHHHHHhcCCC-CCCHH-HHHHHHHHhhhHhHHhcCC---CCccccccCCCCCCCHHHHHHHHHH
Q 003976 456 LVSQEP---ALF-ATSIANNILLGKE-DASMD-RVIEAAKAANAHSFVEGLP---DGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 456 ~V~Q~~---~lf-~~Ti~eNi~~g~~-~~~~~-~i~~a~~~a~~~~~i~~lp---~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
|||.|- -|| ..+|++||.+..- ..... -+....+.+.+.+++..|- .+.+.++ .+||||-+|++.||
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKVvla 413 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVVLA 413 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhHHHH
Confidence 999875 255 5599999988721 11101 2455556666777887763 2344444 48999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhH
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~e 598 (782)
|.|..+|+||||||||.++|.-+.+.|.+.|+++. +|+++|+||-.+..+- .||||+||.+|+|+..=+.++
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999885 6899999999998875 799999999999997544443
No 384
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=9.5e-26 Score=215.08 Aligned_cols=208 Identities=27% Similarity=0.457 Sum_probs=175.8
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
+.++||+..- -|-.+|.++.+||..-+|||+|||||||+..+.|+. |-+|+|.++|.|+..++..+|-++=+|
T Consensus 4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 4566665432 367899999999999999999999999999999997 668999999999999999999999999
Q ss_pred EeccC-CCccccHHHHHhcCCCCCC-HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc---
Q 003976 457 VSQEP-ALFATSIANNILLGKEDAS-MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR--- 531 (782)
Q Consensus 457 V~Q~~-~lf~~Ti~eNi~~g~~~~~-~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~--- 531 (782)
.+|+. ..|...+..-+++..|+-+ -+++.+.|++-+ ++..+|..-.+||||+-||+-+|-..+.
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~-----------l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALA-----------LDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhc-----------ccchhhhhhhhcCcccceeeEEeEEEEEecC
Confidence 98865 5899999999999888521 233444554433 4445566678999999999999988875
Q ss_pred --C--CceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcc-hhhhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 532 --N--PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 532 --~--p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~-~i~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
| .++||||||.+.||...+..+...|.++. .|+|+|+..|+|. |+++||++..+..|++..+|..+|.+..
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 3 47999999999999999988888887774 6999999999996 7999999999999999999999998854
No 385
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=3.1e-25 Score=243.42 Aligned_cols=193 Identities=28% Similarity=0.476 Sum_probs=165.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|.+.||+|.|++.+ .++++++|-|..++.+|+|||+|+|||||++++.|...|+.|.|.-.-+. .++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cch
Confidence 589999999998654 59999999999999999999999999999999999999999999766543 234
Q ss_pred EEec---cCCCccccHHHHHhcCCCC-CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 456 LVSQ---EPALFATSIANNILLGKED-ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 456 ~V~Q---~~~lf~~Ti~eNi~~g~~~-~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
+-.| +-..++.|.-|++.---++ -..+++...+..+|+....+.-|- .+||+|||.|++.||..++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhc
Confidence 3344 3456777888888755453 567888899999998877665543 4899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEE
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE 592 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive 592 (782)
.|.||+|||||++||.++-....++|.++ .-++|+|+|..-.|.+ |++|.+.+||.+..
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 99999999999999999999999999886 3489999999999977 79999999998864
No 386
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=4.4e-25 Score=263.58 Aligned_cols=198 Identities=27% Similarity=0.398 Sum_probs=169.1
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC--CCccEEEECCeeCCCcCHHHHHhHceEEeccC-CCccccH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--PTSGKILLDGHDLKSLQLKWLREQMGLVSQEP-ALFATSI 468 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~--~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~-~lf~~Ti 468 (782)
..|+||+=-++||..+||+|+||+|||||++.|.|--. ..+|+|+|||.+..+ +..++.+|||.|++ ++=.-||
T Consensus 805 qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred EhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcccch
Confidence 39999999999999999999999999999999997643 468999999998765 78999999999987 4655699
Q ss_pred HHHHhcCC----C-CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC-ceEEE
Q 003976 469 ANNILLGK----E-DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP-KILLL 538 (782)
Q Consensus 469 ~eNi~~g~----~-~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p-~illL 538 (782)
||-+.|.. | +.+. +-++++.+..++.+. -|..||.-|..||..||.|+.||=-|+.|| .||.|
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFL 954 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFL 954 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEe
Confidence 99999873 2 2333 235666666665544 367799999999999999999999999999 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcch--hhhcCEEEEEe-CCEEEEecChhHH
Q 003976 539 DEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLST--VRDVDTIMVLK-NGQVVESGTHVDL 599 (782)
Q Consensus 539 DE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~--i~~aD~I~vl~-~G~ive~G~~~eL 599 (782)
|||||+||+.+...|.+.++++. .|+|+++.=|++|. .+..|+++.|+ +|+.|.-|+..+=
T Consensus 955 DEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 955 DEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 99999999999999999999885 69999999999986 47889999996 5799999986553
No 387
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=1.3e-24 Score=228.67 Aligned_cols=183 Identities=18% Similarity=0.196 Sum_probs=134.7
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCee-C-C-----CcCHHHHHhHceEEeccC--CCccccHHHHHh--
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD-L-K-----SLQLKWLREQMGLVSQEP--ALFATSIANNIL-- 473 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~d-i-~-----~~~~~~lR~~i~~V~Q~~--~lf~~Ti~eNi~-- 473 (782)
..++|+||+|||||||+.+|.+...+..|++..++.+ + . ..+.....-.+.+..|++ .++..+++++-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888765421 1 0 111112233344555543 244445444321
Q ss_pred -cCCCCCCHHHHHHHHHHhhhHhHHhc--CCCCccccccCCC---------CCCCHHHHHHHHHHHHhccC----CceEE
Q 003976 474 -LGKEDASMDRVIEAAKAANAHSFVEG--LPDGYQTQVGEGG---------TQLSGGQKQRIAIARAVLRN----PKILL 537 (782)
Q Consensus 474 -~g~~~~~~~~i~~a~~~a~~~~~i~~--lp~G~~t~vge~G---------~~LSgGQkQRiaiARAl~~~----p~ill 537 (782)
+.....+.+++.+.++.++++.+... +|+|.-+.+.+.. .+||||||||++||||++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 12223678888889899888644222 3455545554332 78999999999999999864 89999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCcchhhhcCEEEEEeC
Q 003976 538 LDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRDVDTIMVLKN 587 (782)
Q Consensus 538 LDE~tsalD~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i~~aD~I~vl~~ 587 (782)
|||||++||+.+...+.+.|+++.+ |.|+|+|||+.+.++.||+|++|.+
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998865 8899999999999999999999964
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=4.3e-23 Score=248.81 Aligned_cols=97 Identities=30% Similarity=0.544 Sum_probs=89.2
Q ss_pred Cccc-cccCCCCCCCHHHHHHHHHHHHhcc---CCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh
Q 003976 503 GYQT-QVGEGGTQLSGGQKQRIAIARAVLR---NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR 577 (782)
Q Consensus 503 G~~t-~vge~G~~LSgGQkQRiaiARAl~~---~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~ 577 (782)
|++. ..++...+||||||||++|||||.+ +|+++||||||++||+.+.+.+.+.|+++. +|+|+|+|+|++..++
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5543 3688889999999999999999997 599999999999999999999999999885 5899999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChhHH
Q 003976 578 DVDTIMVL------KNGQVVESGTHVDL 599 (782)
Q Consensus 578 ~aD~I~vl------~~G~ive~G~~~eL 599 (782)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999886
No 389
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=1.2e-22 Score=222.41 Aligned_cols=216 Identities=23% Similarity=0.413 Sum_probs=175.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeC-CCcCHHHHH-hH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL-KSLQLKWLR-EQ 453 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di-~~~~~~~lR-~~ 453 (782)
-++++|++..-+ ++-..++++||++.+||+++|.|-+|-|-+-|+.+|+|+..|.+|+|.++|+|+ ..++....| ..
T Consensus 257 vL~V~~L~v~~~-~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G 335 (501)
T COG3845 257 VLEVEDLSVKDR-RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLG 335 (501)
T ss_pred EEEEeeeEeecC-CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcC
Confidence 478899987643 333489999999999999999999999999999999999999999999999997 667777665 56
Q ss_pred ceEEeccCC----CccccHHHHHhcCCCC---------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 454 MGLVSQEPA----LFATSIANNILLGKED---------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 454 i~~V~Q~~~----lf~~Ti~eNi~~g~~~---------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
+||||.|.+ ...-|+.||+.++.-+ .+..++.+.++..--.-+|. +.|-++++ .+||||+.
T Consensus 336 ~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr--~~~~~~~a----~~LSGGNq 409 (501)
T COG3845 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR--APSPDAPA----RSLSGGNQ 409 (501)
T ss_pred CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCcc--CCCCCcch----hhcCCcce
Confidence 999999873 4566999999987532 22344444443221111121 34555554 47999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhH
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~e 598 (782)
||+-+||-+.++|++||..+||-+||..+.+.|.+.|.+.+ +|+.+++|+-.|+.+- -||||.||.+|+|+...+.++
T Consensus 410 QK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 410 QKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred ehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 99999999999999999999999999999999999987765 6899999999999874 599999999999998877665
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=7.2e-22 Score=217.09 Aligned_cols=217 Identities=20% Similarity=0.389 Sum_probs=146.4
Q ss_pred CcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEE--CCeeCCCcCHHHH
Q 003976 373 LAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL--DGHDLKSLQLKWL 450 (782)
Q Consensus 373 ~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i--~g~di~~~~~~~l 450 (782)
...+|.++|++++|++. .+++|.+|++.+|+.++|+|++||||||+++.|.|-..|..=.+.+ -..++..-....+
T Consensus 72 ~s~dvk~~sls~s~~g~--~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av 149 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHGV--ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAV 149 (614)
T ss_pred ccccceeeeeeeccCCc--eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHH
Confidence 34579999999999854 3999999999999999999999999999999999888775543321 1111111111111
Q ss_pred HhHceEEeccCCCccccHH-------HHHhcCCCCCCHH---HHHHHHHHhhhHh-------HHhcCCCCc-cccccCCC
Q 003976 451 REQMGLVSQEPALFATSIA-------NNILLGKEDASMD---RVIEAAKAANAHS-------FVEGLPDGY-QTQVGEGG 512 (782)
Q Consensus 451 R~~i~~V~Q~~~lf~~Ti~-------eNi~~g~~~~~~~---~i~~a~~~a~~~~-------~i~~lp~G~-~t~vge~G 512 (782)
. ....+..+-+ |++.-..++...+ ++++-+...+.+. -+..| |+ .......-
T Consensus 150 ~--------~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~k~~ 219 (614)
T KOG0927|consen 150 Q--------AVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQDKKV 219 (614)
T ss_pred H--------HHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHHHHh
Confidence 1 1111111111 1111111111111 1111111111111 11111 22 22334455
Q ss_pred CCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCE-E
Q 003976 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQ-V 590 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~-i 590 (782)
..||||||-|+||||||+.+|++|+|||||.+||.++..-+.+.|.+.... |+++++|.-.++.. |-.|+-|++++ +
T Consensus 220 ~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~ 298 (614)
T KOG0927|consen 220 KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLI 298 (614)
T ss_pred hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheeccccee
Confidence 789999999999999999999999999999999999999999999775332 89999999999976 89999999999 7
Q ss_pred EEecChhHHhhc
Q 003976 591 VESGTHVDLISK 602 (782)
Q Consensus 591 ve~G~~~eL~~~ 602 (782)
..+|+|++.+..
T Consensus 299 ~y~Gnydqy~~t 310 (614)
T KOG0927|consen 299 YYEGNYDQYVKT 310 (614)
T ss_pred eecCCHHHHhhH
Confidence 889999998754
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=4.2e-22 Score=202.53 Aligned_cols=172 Identities=19% Similarity=0.196 Sum_probs=119.1
Q ss_pred cccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC-HHHHHhHceEEeccCCCccccHHHHH
Q 003976 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWLREQMGLVSQEPALFATSIANNI 472 (782)
Q Consensus 394 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~-~~~lR~~i~~V~Q~~~lf~~Ti~eNi 472 (782)
++++++++.+| +.+|+||+|||||||+..|.-.+..... ....|..+.++- ...-...|.+++|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 45677787777 7799999999999999998743332211 001122111110 0011345777888766555 2
Q ss_pred hcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh----ccCCceEEEeCCCCCCCHH
Q 003976 473 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV----LRNPKILLLDEATSALDAE 548 (782)
Q Consensus 473 ~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl----~~~p~illLDE~tsalD~~ 548 (782)
+ ....+ .+.+.+++.. ++- ..+...+||||||||++||||+ +.+|+++||||||++||+.
T Consensus 84 ----~-~~~~~------~~~~~~~l~~-~~~----~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ----P-LCVLS------QDMARSFLTS-NKA----AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----c-CCHHH------HHHHHHHhcc-ccc----cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 2 11111 1223444443 222 3445568999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHHHHhC----CCeEEEEecCcchhhhcCEEEEEeCCE
Q 003976 549 SELIVQRALEKIMS----NRTTIVVAHRLSTVRDVDTIMVLKNGQ 589 (782)
Q Consensus 549 ~e~~i~~~l~~~~~----~~T~i~iaHrl~~i~~aD~I~vl~~G~ 589 (782)
+...+.+.|.+..+ ++|+|++||+++.+.+.|+|-||..|+
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999999988643 358899999999999999999998754
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.9e-21 Score=212.75 Aligned_cols=194 Identities=23% Similarity=0.334 Sum_probs=162.8
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
..+++.+|+|.|+..+-+.+.+++++++.-+.+++||++|+||||+++++.+-..|..|.+-+.+ |.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 35999999999965432599999999999999999999999999999999999999999999988 5679
Q ss_pred eEEeccCCCc-ccc--HHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCC-CCCCHHHHHHHHHHHHhc
Q 003976 455 GLVSQEPALF-ATS--IANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG-TQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 455 ~~V~Q~~~lf-~~T--i~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G-~~LSgGQkQRiaiARAl~ 530 (782)
+|-.|...=| +-. .-|-..=..|..+++|+++.|...|+...+. -.. ..||||||-|+++|-...
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la-----------~~si~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELA-----------LQSIASLSGGQKSRVAFAACTW 498 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhh-----------hccccccCCcchhHHHHHHHhc
Confidence 9988876433 222 2222222235568999999998877655553 222 569999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEEE
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE 592 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive 592 (782)
.+|.+|+|||||..||.++-..+-++|+.+.. -||+|||..+.+.. |+.+.+.++|+|..
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~G--GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFNG--GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcCC--cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999988743 69999999999987 89999999999975
No 393
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.85 E-value=3.9e-21 Score=192.07 Aligned_cols=85 Identities=22% Similarity=0.284 Sum_probs=79.0
Q ss_pred HhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEec
Q 003976 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL----RNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAH 571 (782)
Q Consensus 497 i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~----~~p~illLDE~tsalD~~~e~~i~~~l~~~~~-~~T~i~iaH 571 (782)
+.-+|+|..|++ ||||||||++||||+. .+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 667899999999 9999999999999985 79999999999999999999999999988754 589999999
Q ss_pred CcchhhhcCEEEEEeC
Q 003976 572 RLSTVRDVDTIMVLKN 587 (782)
Q Consensus 572 rl~~i~~aD~I~vl~~ 587 (782)
+.+.++.+|+++++++
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999976
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=8.8e-22 Score=215.34 Aligned_cols=200 Identities=22% Similarity=0.372 Sum_probs=142.2
Q ss_pred cCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCee--CCCcCHHHHH
Q 003976 374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD--LKSLQLKWLR 451 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~d--i~~~~~~~lR 451 (782)
..+|..+|.+.+|.++ ..|++-++++..|..+++|||+|+|||||+++|.. |.|.+-.++ ++..+...
T Consensus 78 ~~Di~~~~fdLa~G~k--~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~-- 147 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK--ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEA-- 147 (582)
T ss_pred ccceeeeeeeeeecch--hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHH--
Confidence 4579999999999754 49999999999999999999999999999999988 333322211 11111110
Q ss_pred hHceEEeccCCCccccHHHHHhcCCCC----CCHHHHHH-HHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 452 EQMGLVSQEPALFATSIANNILLGKED----ASMDRVIE-AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 452 ~~i~~V~Q~~~lf~~Ti~eNi~~g~~~----~~~~~i~~-a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
-| ..+-.+|-+.-+..-.+. .+.+++.. +++-.+..+..+..|- ..||||=|-|+|||
T Consensus 148 ------~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLA 210 (582)
T KOG0062|consen 148 ------LQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALA 210 (582)
T ss_pred ------Hh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHH
Confidence 01 122223333333221110 02333333 4444444444444442 47999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEE-EEecChhHHhhc
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQV-VESGTHVDLISK 602 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~i-ve~G~~~eL~~~ 602 (782)
||+.++||||||||||..||..+-.-+.+.|..+. .|+|+|+|+-+++.. |-.|+.+++=|+ ...|++++..+.
T Consensus 211 RAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 211 RALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 99999999999999999999999999999998763 899999999999876 777888887666 357888777654
No 395
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.84 E-value=2.2e-21 Score=203.01 Aligned_cols=198 Identities=20% Similarity=0.276 Sum_probs=144.8
Q ss_pred EEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc--EEEECCeeCCCcCHHHHHhHce--EEeccCCCccccHHHHHhc
Q 003976 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG--KILLDGHDLKSLQLKWLREQMG--LVSQEPALFATSIANNILL 474 (782)
Q Consensus 399 l~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G--~I~i~g~di~~~~~~~lR~~i~--~V~Q~~~lf~~Ti~eNi~~ 474 (782)
+.+.+||.++|+||+|+|||||++.+.+.++...+ .+.+-...-+..+..++.+.+. +|-.+. +.+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence 57889999999999999999999999999987643 3333333333356666666651 111110 0011111110
Q ss_pred CCCCCCHHHHHHHHH---H-----hhhHhHHhcCCCCccccccCCCCCCCHHH--------HHHHHHHHHhccCCceEEE
Q 003976 475 GKEDASMDRVIEAAK---A-----ANAHSFVEGLPDGYQTQVGEGGTQLSGGQ--------KQRIAIARAVLRNPKILLL 538 (782)
Q Consensus 475 g~~~~~~~~i~~a~~---~-----a~~~~~i~~lp~G~~t~vge~G~~LSgGQ--------kQRiaiARAl~~~p~illL 538 (782)
. . .+.+.++ . .-+-|-+.++|+++++.+|+.|..+|||| |||+++||+++++++|.+|
T Consensus 88 ~-----~-~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l 161 (249)
T cd01128 88 A-----E-MVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII 161 (249)
T ss_pred H-----H-HHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe
Confidence 0 0 1111111 1 11346678999999999999999999999 9999999999999999999
Q ss_pred eCCCCCCCHHHHHH-HHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHHhhh
Q 003976 539 DEATSALDAESELI-VQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 614 (782)
Q Consensus 539 DE~tsalD~~~e~~-i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~~~~ 614 (782)
||+++|+.++.. ++ ++++. .++|.|+++|||++..++|.|.||++|++ |++++..++.|+.++..+.
T Consensus 162 --~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~~r~ 230 (249)
T cd01128 162 --ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWLLRR 230 (249)
T ss_pred --eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHHHHH
Confidence 999999876654 44 45554 68999999999999999999999999997 8899988888888876543
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=4.3e-20 Score=199.19 Aligned_cols=181 Identities=24% Similarity=0.464 Sum_probs=138.8
Q ss_pred eEEEEcCCCCCcccccceEEee-----CCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 381 EVCFAYPSRPHMVFENLNFSVD-----AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 381 ~v~f~y~~~~~~vL~~isl~i~-----~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
+.-++|++- .+.+.++.|+++ .||.++++||+|-||||++++|.|...|++|+ ..++ +|+
T Consensus 340 ~~lv~y~~~-~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vS 404 (591)
T COG1245 340 DTLVEYPDL-KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVS 404 (591)
T ss_pred ceeeecchh-eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEe
Confidence 444566642 236778888765 56789999999999999999999999999998 2222 499
Q ss_pred EEeccC-CCccccHHHHHhcCCCC-CCHHHH-HHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 456 LVSQEP-ALFATSIANNILLGKED-ASMDRV-IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 456 ~V~Q~~-~lf~~Ti~eNi~~g~~~-~~~~~i-~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
|=||-- .-|++||++=+.-..+. ....-+ .+.++--++++ .....-..||||+.||+|||-||.++
T Consensus 405 yKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~-----------i~e~~v~~LSGGELQRvaIaa~L~re 473 (591)
T COG1245 405 YKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLED-----------LLERPVDELSGGELQRVAIAAALSRE 473 (591)
T ss_pred ecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHH-----------HHhcccccCCchhHHHHHHHHHhccc
Confidence 999954 24899999876544332 111111 12333333333 33344457999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeC
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKN 587 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~ 587 (782)
+|++|||||++.||.+.+-.+-++|++.. .++|.++|-|++-.+.. +||++|.+.
T Consensus 474 ADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 474 ADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999999999999999999999999875 47899999999998876 799999964
No 397
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.8e-20 Score=196.70 Aligned_cols=189 Identities=27% Similarity=0.448 Sum_probs=142.8
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
+-+.||+|.||+. .+.+++++|-|.--..+|||||+|.|||||++||.|-++|++|+.+=+. |=+||+
T Consensus 587 LGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG~ 654 (807)
T KOG0066|consen 587 LGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIGW 654 (807)
T ss_pred eecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeeec
Confidence 6689999999864 4699999999999999999999999999999999999999999987654 235777
Q ss_pred EeccCC-Ccc--ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 457 VSQEPA-LFA--TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 457 V~Q~~~-lf~--~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
--|... -.+ .|-.|-+.-+. +...++.+.++-..++..- -+|. .-..||||||.|+++|---++.|
T Consensus 655 FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 655 FDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred hhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhcCCC
Confidence 777541 112 24444443222 2345555555544443221 2333 23579999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcC-EEEEEeCCEE
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVD-TIMVLKNGQV 590 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD-~I~vl~~G~i 590 (782)
+||||||||.+||.++-..+-++|++.. -.+|+|+|.-..|..-| ..+|+++-.|
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCCh
Confidence 9999999999999999999999998863 47999999888776544 3445554333
No 398
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=6e-20 Score=180.05 Aligned_cols=206 Identities=26% Similarity=0.401 Sum_probs=164.2
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC----CCccEEEECCeeCCCcCHHHHHhH----ceEEeccCCC
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE----PTSGKILLDGHDLKSLQLKWLREQ----MGLVSQEPAL 463 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~----~~~G~I~i~g~di~~~~~~~lR~~----i~~V~Q~~~l 463 (782)
++.+++|++...||+-++||.||||||-+.+.|+|... .+.-+.++|++|+-.++++.-|+- |++++|||.-
T Consensus 21 K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~s 100 (330)
T COG4170 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchh
Confidence 48999999999999999999999999999999999874 356678899999999999888865 5689999964
Q ss_pred ccc---cH----HHHHhcCC-C-------CCCHHHHHHHHHHhhhHh--HHh-cCCCCccccccCCCCCCCHHHHHHHHH
Q 003976 464 FAT---SI----ANNILLGK-E-------DASMDRVIEAAKAANAHS--FVE-GLPDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 464 f~~---Ti----~eNi~~g~-~-------~~~~~~i~~a~~~a~~~~--~i~-~lp~G~~t~vge~G~~LSgGQkQRiai 525 (782)
.-+ +| -+||-.-. . .....+..+.+.++++.| +|+ +-| ..|.-|+-|++.|
T Consensus 101 CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP-----------~ElTeGE~QKVMI 169 (330)
T COG4170 101 CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP-----------YELTEGECQKVMI 169 (330)
T ss_pred hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc-----------chhccCcceeeee
Confidence 322 33 34553211 0 011334556666666633 343 233 3567788899999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|-|+..+|++||-||||.++|+.|...|...|.++. .|.|+++++|++.++.. ||+|-||-=|+-+|.+.-++|++.
T Consensus 170 A~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~ 249 (330)
T COG4170 170 AIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249 (330)
T ss_pred ehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcC
Confidence 999999999999999999999999999999998775 46789999999999855 999999999999999999999986
Q ss_pred -CchhHH
Q 003976 603 -GGEYAA 608 (782)
Q Consensus 603 -~~~y~~ 608 (782)
.-.|.+
T Consensus 250 PhHPYTq 256 (330)
T COG4170 250 PHHPYTQ 256 (330)
T ss_pred CCCchHH
Confidence 345554
No 399
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.8e-19 Score=192.75 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHhcc----CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCE
Q 003976 514 QLSGGQKQRIAIARAVLR----NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 589 (782)
Q Consensus 514 ~LSgGQkQRiaiARAl~~----~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ 589 (782)
.|||||+||++|||+++. +|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999999888899999999999888999999999874
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=1.2e-19 Score=186.45 Aligned_cols=180 Identities=19% Similarity=0.236 Sum_probs=117.7
Q ss_pred ccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCC---cccc----
Q 003976 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPAL---FATS---- 467 (782)
Q Consensus 395 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~l---f~~T---- 467 (782)
+++.+++.+| ..+|+||+|||||||+.+|.-..-...... . +.-..+.+ +..=.++..+ |...
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~---~---r~~~~~~~---i~~g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL---G---RAKKVGEF---VKRGCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc---c---cccCHHHH---hhCCCCcEEEEEEEEeCCCcc
Confidence 4555665554 678999999999999999864442111100 0 01111111 1111121111 1111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH----hccCCceEEEeCCCC
Q 003976 468 IANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA----VLRNPKILLLDEATS 543 (782)
Q Consensus 468 i~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA----l~~~p~illLDE~ts 543 (782)
..+|+.+- .+.+.+.++++.... |.+..+|.+.+.. ..+...||||||||+.+|++ ++.+|+++|+||||+
T Consensus 85 ~~~n~~~~---~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF---LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE---EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 23343321 245667777777665 6667788776543 55778999999999887754 468999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhC--C-CeEEEEecCcchh-hhcC--EEEEEeCCE
Q 003976 544 ALDAESELIVQRALEKIMS--N-RTTIVVAHRLSTV-RDVD--TIMVLKNGQ 589 (782)
Q Consensus 544 alD~~~e~~i~~~l~~~~~--~-~T~i~iaHrl~~i-~~aD--~I~vl~~G~ 589 (782)
+||+.+.+.+.+.|.+..+ + .|+|+|||++..+ ..|| +|++|++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999988753 3 4799999998654 4455 788888776
No 401
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=4.4e-19 Score=202.96 Aligned_cols=102 Identities=28% Similarity=0.525 Sum_probs=93.5
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhccCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEE
Q 003976 507 QVGEGGTQLSGGQKQRIAIARAVLRNP---KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTI 582 (782)
Q Consensus 507 ~vge~G~~LSgGQkQRiaiARAl~~~p---~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I 582 (782)
.+|..-.+||||+.|||-||.-|.++. -++||||||.+|-.+--+.+++.|.++. +|.|+|+|-|.|+.|+.||+|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 469999999999999999999999998 9999999999999999999999998885 699999999999999999999
Q ss_pred EEE------eCCEEEEecChhHHhhcCchhHH
Q 003976 583 MVL------KNGQVVESGTHVDLISKGGEYAA 608 (782)
Q Consensus 583 ~vl------~~G~ive~G~~~eL~~~~~~y~~ 608 (782)
+=| +.|+||.+||++|+.+..+.|..
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg 926 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVKASYTG 926 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCccchhH
Confidence 998 57899999999999986555543
No 402
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.79 E-value=2.2e-19 Score=183.00 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=109.6
Q ss_pred ccccceEEeeCCC-EEEEeCCCCCcHHHHHHHHH--------cCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCC
Q 003976 393 VFENLNFSVDAGK-TFAFVGPSGSGKSTIISMVQ--------RLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPAL 463 (782)
Q Consensus 393 vL~~isl~i~~G~-~vaivG~sGsGKSTl~~ll~--------~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~l 463 (782)
..-++||++++|+ .++|+||+||||||+++.|. |.+-|....+ .++|+.|.-.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE-
Confidence 3457899999996 69999999999999999988 6555542111 1334444311
Q ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCC
Q 003976 464 FATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543 (782)
Q Consensus 464 f~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~ts 543 (782)
.++ .+..+.++-..+|+|+|||..|++++ .+|+++++||||+
T Consensus 78 ---------~lg----------------------------~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~ 119 (200)
T cd03280 78 ---------DIG----------------------------DEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGS 119 (200)
T ss_pred ---------ecC----------------------------chhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCC
Confidence 011 11112233358999999999999985 8999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCEEEEe
Q 003976 544 ALDAESELIVQ-RALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 593 (782)
Q Consensus 544 alD~~~e~~i~-~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~ 593 (782)
++|+.....+. ..++.+. .+.|+|++||.....+.||++++|++|+++..
T Consensus 120 glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 120 GTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 99999888775 4566654 47899999999777788999999999999865
No 403
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=1.9e-19 Score=215.88 Aligned_cols=204 Identities=23% Similarity=0.401 Sum_probs=170.8
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc-cH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SI 468 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~-Ti 468 (782)
+|+|+|.-++||+.+.+.||.|||||||++.|.|-.+-. .|+|..||.|.++... ++.++|.+|+..-|.. |+
T Consensus 130 il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 130 ILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred eecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeEE
Confidence 999999999999999999999999999999999987643 5699999999999887 8899999999988875 99
Q ss_pred HHHHhcCC----C-----CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCC-CCCCHHHHHHHHHHHHhccCCceEEE
Q 003976 469 ANNILLGK----E-----DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG-TQLSGGQKQRIAIARAVLRNPKILLL 538 (782)
Q Consensus 469 ~eNi~~g~----~-----~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G-~~LSgGQkQRiaiARAl~~~p~illL 538 (782)
||-+.|.. | +.+..|..++ ...-.=-+-.|....||.||.+. ...|||||.|+++|-+++.+|+++.+
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~--~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAA--MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHH--HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 99998853 1 1222222211 11111123467788999999775 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcc--hhhhcCEEEEEeCCEEEEecChhHHhh
Q 003976 539 DEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLS--TVRDVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 539 DE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~--~i~~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
||+|-+||+.|.-++.++|++..+ +.|.++.=|+.+ +..--|.|++|.+|+++.+|+.++.+.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999998753 678888778765 467789999999999999999999874
No 404
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.79 E-value=1.4e-18 Score=170.15 Aligned_cols=213 Identities=21% Similarity=0.291 Sum_probs=161.3
Q ss_pred cCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC-cC------
Q 003976 374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS-LQ------ 446 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~-~~------ 446 (782)
++.|++.++.|+|+.. +|++-|+|+++|+|....+||.+|+|||||+++|.|-.-...|.|.+.|.+--. -+
T Consensus 11 ~~aievsgl~f~y~~~-dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS-DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccC-CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 4579999999999864 479999999999999999999999999999999999988888999999976432 11
Q ss_pred ----HHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 447 ----LKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 447 ----~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
-.+|++..+..- |..|..+-=.+.+.||-...+.++-++..+. +|-.+-=|-..+|-|||.|
T Consensus 90 l~YLGgeW~~~~~~ag-evplq~D~sae~mifgV~g~dp~Rre~LI~i-------------LDIdl~WRmHkvSDGqrRR 155 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVGGDDPERREKLIDI-------------LDIDLRWRMHKVSDGQRRR 155 (291)
T ss_pred eeEecccccccccccc-cccccccccHHHHHhhccCCChhHhhhhhhh-------------eeccceEEEeeccccchhh
Confidence 123444444443 3333333223444555443333322222211 2333444557899999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL 599 (782)
+.|+--|++.=++|+|||-|--||...+..+.+-+++.. +|.|++..||-..-++. +.+++.|.+|+++..-++++.
T Consensus 156 VQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 156 VQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred hHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence 999999999999999999999999999999999997653 68899999999998866 799999999999986666655
Q ss_pred hh
Q 003976 600 IS 601 (782)
Q Consensus 600 ~~ 601 (782)
.+
T Consensus 236 ~e 237 (291)
T KOG2355|consen 236 KE 237 (291)
T ss_pred hh
Confidence 43
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=2.4e-18 Score=216.35 Aligned_cols=210 Identities=22% Similarity=0.252 Sum_probs=147.3
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHH------c---CCCCCccEEEECCeeCCCcC----------HHHHHhH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ------R---LYEPTSGKILLDGHDLKSLQ----------LKWLREQ 453 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~------~---~~~~~~G~I~i~g~di~~~~----------~~~lR~~ 453 (782)
-|+|++++||-|..++|.|.||||||||++=.+ . -.+..+--|.||-.||..-+ .+.+|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 599999999999999999999999999997443 1 11333445777777765433 2445555
Q ss_pred ceEEec------cCCC--cc------------ccHHHHHhcCCCCC------------------------CHHH-----H
Q 003976 454 MGLVSQ------EPAL--FA------------TSIANNILLGKEDA------------------------SMDR-----V 484 (782)
Q Consensus 454 i~~V~Q------~~~l--f~------------~Ti~eNi~~g~~~~------------------------~~~~-----i 484 (782)
.+-.|+ .|-. || |.|.=++.|- |+. +-.+ |
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl-~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFY-ALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccC-CCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 543222 1111 12 0111111111 100 0000 2
Q ss_pred HHHHH-------HhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC---CceEEEeCCCCCCCHHHHHHHH
Q 003976 485 IEAAK-------AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN---PKILLLDEATSALDAESELIVQ 554 (782)
Q Consensus 485 ~~a~~-------~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~---p~illLDE~tsalD~~~e~~i~ 554 (782)
.+|++ ...-.+.+..+--||-+ +|+.-.+|||||.|||-||.-|.++ +.++||||||.+|++..-+.+.
T Consensus 1664 ~ea~~~F~~~~~i~~~L~~L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll 1742 (1809)
T PRK00635 1664 EEVAETFPFLKKIQKPLQALIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL 1742 (1809)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH
Confidence 22221 22222333444446653 5999999999999999999999976 7899999999999999999999
Q ss_pred HHHHHHh-CCCeEEEEecCcchhhhcCEEEEE------eCCEEEEecChhHHhhcCc
Q 003976 555 RALEKIM-SNRTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGTHVDLISKGG 604 (782)
Q Consensus 555 ~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl------~~G~ive~G~~~eL~~~~~ 604 (782)
+.++++. +|.|+|+|.|++..++.||+|+-| +.|+|+.+||++|+.+...
T Consensus 1743 ~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~ 1799 (1809)
T PRK00635 1743 VQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKD 1799 (1809)
T ss_pred HHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCC
Confidence 9998884 689999999999999999999999 4689999999999987643
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.76 E-value=4.7e-18 Score=181.42 Aligned_cols=199 Identities=31% Similarity=0.510 Sum_probs=153.4
Q ss_pred CCCcCcEEEEeEEEEcCC----------------------C--CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHc
Q 003976 371 PKLAGQIEFSEVCFAYPS----------------------R--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 371 ~~~~g~i~~~~v~f~y~~----------------------~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
+...+.+.|+|++..|.+ + ...+|+|+||+|+||+.++|||+||+||||++++|+|
T Consensus 352 e~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G 431 (593)
T COG2401 352 EKLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG 431 (593)
T ss_pred cccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHH
Confidence 345677889998887642 0 0138999999999999999999999999999999998
Q ss_pred C--------CCCCccEEEECCeeCCCcCHHHHHhHceEEec--cCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhH
Q 003976 427 L--------YEPTSGKILLDGHDLKSLQLKWLREQMGLVSQ--EPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496 (782)
Q Consensus 427 ~--------~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q--~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~ 496 (782)
. |.|++|.|.+--..+. +.+|- ||.+=.-||.|.+.-- + -+..--.+.++.+++.|-
T Consensus 432 ~~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep~f~~~tilehl~s~-t-GD~~~AveILnraGlsDA 498 (593)
T COG2401 432 AQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEPEFGEVTILEHLRSK-T-GDLNAAVEILNRAGLSDA 498 (593)
T ss_pred HhhcccccccCCCCCceeccccchh-----------hccCcccccccCchhHHHHHhhc-c-CchhHHHHHHHhhccchh
Confidence 5 6899999987543222 23333 4444444888876421 1 122334566777777665
Q ss_pred HhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcc
Q 003976 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLS 574 (782)
Q Consensus 497 i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~ 574 (782)
+. |- ..-..||-|||-|..||+++...|.+++.||.-|.||+.|...+...|.++. .+-|.++||||.+
T Consensus 499 vl-----yR----r~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE 569 (593)
T COG2401 499 VL-----YR----RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE 569 (593)
T ss_pred hh-----hh----ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 52 11 2335799999999999999999999999999999999999999999999886 6899999999999
Q ss_pred hhhhc--CEEEEEeCCEEE
Q 003976 575 TVRDV--DTIMVLKNGQVV 591 (782)
Q Consensus 575 ~i~~a--D~I~vl~~G~iv 591 (782)
.+..- |+++.+.=|++.
T Consensus 570 v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 570 VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHhccCCceeEEeeccccc
Confidence 88764 999988777654
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.74 E-value=1e-17 Score=165.08 Aligned_cols=135 Identities=24% Similarity=0.343 Sum_probs=99.7
Q ss_pred eEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE-EeccCCCccccHHHHHhcCC
Q 003976 398 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL-VSQEPALFATSIANNILLGK 476 (782)
Q Consensus 398 sl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~-V~Q~~~lf~~Ti~eNi~~g~ 476 (782)
+..+.++..+.|+||+||||||+++.+.-..-..+|.+.... ++ +.++ +++...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 344445579999999999999999997655544444443311 00 1111 22221111
Q ss_pred CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc----CCceEEEeCCCCCCCHHHHHH
Q 003976 477 EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR----NPKILLLDEATSALDAESELI 552 (782)
Q Consensus 477 ~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~----~p~illLDE~tsalD~~~e~~ 552 (782)
+ -+. .+||+||+||++|||++.. +|+++|||||++++|+.....
T Consensus 72 --------------------i-------~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 --------------------I-------FTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred --------------------e-------hhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 0 001 1199999999999999986 789999999999999999999
Q ss_pred HHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEEeC
Q 003976 553 VQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKN 587 (782)
Q Consensus 553 i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~ 587 (782)
+.+.+.+.. ++.|+|++||+.+....+|+++.|+.
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 999998764 36899999999999999999999964
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=5.9e-18 Score=182.82 Aligned_cols=188 Identities=27% Similarity=0.404 Sum_probs=130.2
Q ss_pred eEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHh--------
Q 003976 381 EVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE-------- 452 (782)
Q Consensus 381 ~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~-------- 452 (782)
++..+|..+. -.|.++- ..++|+.++|+||+|-||||.++.|.|...|.=|+- ++-+=.+-=.+..|.
T Consensus 79 e~vHRYg~Ng-FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~ 154 (591)
T COG1245 79 EVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFK 154 (591)
T ss_pred cceeeccCCc-eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHH
Confidence 5667785321 1233322 246899999999999999999999999999986653 221100000011110
Q ss_pred -----------HceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 453 -----------QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 453 -----------~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
++-||---|-.+.|+++|=+.--.+ .-..++.++.| +++..+...-.+||||+-|
T Consensus 155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de------------~g~~devve~l--~L~nvl~r~v~~LSGGELQ 220 (591)
T COG1245 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE------------RGKFDEVVERL--GLENVLDRDVSELSGGELQ 220 (591)
T ss_pred HHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh------------cCcHHHHHHHh--cchhhhhhhhhhcCchHHH
Confidence 1222222344455555554332211 11234444444 5566666777899999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCcchhhh-cCEEEEEe
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD-VDTIMVLK 586 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i~~-aD~I~vl~ 586 (782)
|+|||-|++|++|++++|||||-||...+-..-+.|+++.+ ++++|+|-|+|..+.. +|.|-++-
T Consensus 221 r~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 221 RVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 99999999999999999999999999999999999999987 6999999999999976 78887774
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.71 E-value=3.6e-17 Score=169.16 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=111.4
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce-EEeccCCCccccHHH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG-LVSQEPALFATSIAN 470 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~-~V~Q~~~lf~~Ti~e 470 (782)
.+.+|+++++++|++++|.|||||||||+++.+.- -.+..++| +||.+...+. +.+
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~~ 74 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IVD 74 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--ccc
Confidence 48999999999999999999999999999999981 24455666 7777642221 111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh--ccCCceEEEeCC---CCCC
Q 003976 471 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV--LRNPKILLLDEA---TSAL 545 (782)
Q Consensus 471 Ni~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl--~~~p~illLDE~---tsal 545 (782)
+ .+..+ |.+... ...+|.|++|+..+|+++ +.+|+++||||| |+++
T Consensus 75 ~------------------------il~~~--~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l 125 (222)
T cd03285 75 C------------------------ILARV--GASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY 125 (222)
T ss_pred e------------------------eEeee--ccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence 1 11111 111111 247999999999999999 999999999999 9999
Q ss_pred CHHHHHHH-HHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecC
Q 003976 546 DAESELIV-QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595 (782)
Q Consensus 546 D~~~e~~i-~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~ 595 (782)
|+.+.... .+.+.+ ..++|+|++||..+..+.||++..+++|++...++
T Consensus 126 D~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 126 DGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 99865432 345543 34789999999655556699999999999987654
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=9.8e-17 Score=171.12 Aligned_cols=190 Identities=18% Similarity=0.224 Sum_probs=121.5
Q ss_pred cccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-----------------------------------------Cc
Q 003976 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----------------------------------------TS 432 (782)
Q Consensus 394 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-----------------------------------------~~ 432 (782)
+++.++++.+| .++|+|||||||||++.+|.-+... ..
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 44566777776 6889999999999999887432210 11
Q ss_pred cEEEECCeeCCC-cCHHHHHhHceEEeccCCCccccHHHHHhcCCC---CCC------HHHHHHHHHHhhhHhHHhcCCC
Q 003976 433 GKILLDGHDLKS-LQLKWLREQMGLVSQEPALFATSIANNILLGKE---DAS------MDRVIEAAKAANAHSFVEGLPD 502 (782)
Q Consensus 433 G~I~i~g~di~~-~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~---~~~------~~~i~~a~~~a~~~~~i~~lp~ 502 (782)
..+.+||..++. -++..+-..|.+.|++..|+.++-.+...|-.. ... .+++.++.+.- +-+.+-|+
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~---~~~~~g~~ 167 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQR---NALLKGPH 167 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH---HHHhCCCC
Confidence 245577777655 122233344666677777885443332222110 111 11222332221 11112466
Q ss_pred CccccccCCCC----CCCHHHHHHHHHHHHhc---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Q 003976 503 GYQTQVGEGGT----QLSGGQKQRIAIARAVL---------RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVV 569 (782)
Q Consensus 503 G~~t~vge~G~----~LSgGQkQRiaiARAl~---------~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~i 569 (782)
..+..+.-++. .+|+||||+++|||++. ++|+++||||||++||+...+.+.+.+.+.. .++++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEE
Confidence 55555443333 48999999999999974 8999999999999999999999999997642 45666
Q ss_pred ecCcchhhh-c---CEEEEEeCCEE
Q 003976 570 AHRLSTVRD-V---DTIMVLKNGQV 590 (782)
Q Consensus 570 aHrl~~i~~-a---D~I~vl~~G~i 590 (782)
+|....+.+ | ++|+.+++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred eCCchhccchhccCccEEEEeCcEE
Confidence 666555543 4 78999999986
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.68 E-value=1.6e-16 Score=192.61 Aligned_cols=100 Identities=29% Similarity=0.428 Sum_probs=91.1
Q ss_pred Ccccc-ccCCCCCCCHHHHHHHHHHHHhccCC--ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh
Q 003976 503 GYQTQ-VGEGGTQLSGGQKQRIAIARAVLRNP--KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD 578 (782)
Q Consensus 503 G~~t~-vge~G~~LSgGQkQRiaiARAl~~~p--~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~ 578 (782)
|++.. .+....+|||||||||+|||||..+| ++|||||||++||+...+.+.+.|+++. +|.|+|+|+|+++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 55433 46677899999999999999999997 9999999999999999999999999886 48999999999999999
Q ss_pred cCEEEEE------eCCEEEEecChhHHhhc
Q 003976 579 VDTIMVL------KNGQVVESGTHVDLISK 602 (782)
Q Consensus 579 aD~I~vl------~~G~ive~G~~~eL~~~ 602 (782)
||+|++| ++|+|+.+|+++++.+.
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998754
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=1.5e-16 Score=192.61 Aligned_cols=100 Identities=28% Similarity=0.447 Sum_probs=90.5
Q ss_pred Ccccc-ccCCCCCCCHHHHHHHHHHHHhccCC--ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh
Q 003976 503 GYQTQ-VGEGGTQLSGGQKQRIAIARAVLRNP--KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD 578 (782)
Q Consensus 503 G~~t~-vge~G~~LSgGQkQRiaiARAl~~~p--~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~ 578 (782)
|++.. .+....+|||||+||++|||||..+| ++|||||||++||+++.+.+.+.|+++. +|+|+|+|+|+++.++.
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 44433 56777899999999999999999986 8999999999999999999999999885 48999999999999999
Q ss_pred cCEEEEE------eCCEEEEecChhHHhhc
Q 003976 579 VDTIMVL------KNGQVVESGTHVDLISK 602 (782)
Q Consensus 579 aD~I~vl------~~G~ive~G~~~eL~~~ 602 (782)
||+|++| ++|+|+++|+++++...
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998643
No 413
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=5.2e-16 Score=197.69 Aligned_cols=111 Identities=27% Similarity=0.327 Sum_probs=102.2
Q ss_pred CccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH------HHHHHHHhccCCceE
Q 003976 463 LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ------RIAIARAVLRNPKIL 536 (782)
Q Consensus 463 lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ------RiaiARAl~~~p~il 536 (782)
.|+||++|||.+ +|+++++ ..+++.+++++|+..+|.| ||.++.+| .||||||| |++||||++.+|+||
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 599999999999 8887766 7899999999999999999 99999886 99999999 999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh------CCCeEEEEecCcchhhh
Q 003976 537 LLDEATSALDAESELIVQRALEKIM------SNRTTIVVAHRLSTVRD 578 (782)
Q Consensus 537 lLDE~tsalD~~~e~~i~~~l~~~~------~~~T~i~iaHrl~~i~~ 578 (782)
+|||||++||+.+...+.+.|.++. .|.|+|+|||++..+..
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 9999999999999999999887763 36899999999998864
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.64 E-value=4.7e-16 Score=158.79 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=101.1
Q ss_pred ceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC-CCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcC
Q 003976 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRL-YEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG 475 (782)
Q Consensus 397 isl~i~~G~~vaivG~sGsGKSTl~~ll~~~-~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g 475 (782)
.++++.+|++++|+||+||||||+++.|.+. +.+..|...- + .+..+++..|...
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~----------~~~~i~~~dqi~~------------- 77 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A----------ESASIPLVDRIFT------------- 77 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c----------cccccCCcCEEEE-------------
Confidence 3455558999999999999999999999842 2121111000 0 0112332222111
Q ss_pred CCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHH
Q 003976 476 KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555 (782)
Q Consensus 476 ~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~ 555 (782)
.++.. + .+-++-..++++++| ++.+.+...+|+++||||||+++|+.....+..
T Consensus 78 -----------------------~~~~~-d-~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 78 -----------------------RIGAE-D-SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred -----------------------EecCc-c-cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 11110 0 112223456766665 666678889999999999999999997766544
Q ss_pred H-HHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhH
Q 003976 556 A-LEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 556 ~-l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~e 598 (782)
. ++.+. .+.|+|++||+.+.++.+|++..+++|++.+++...+
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 3 44443 4789999999999999999999999999998876533
No 415
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.64 E-value=9.7e-17 Score=145.24 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=71.7
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 471 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eN 471 (782)
.+|++++|++++|+.++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|.+|||||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 3899999999999999999999999999999986 89999999999999999999999999998 999999999
Q ss_pred Hhc
Q 003976 472 ILL 474 (782)
Q Consensus 472 i~~ 474 (782)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 998
No 416
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.64 E-value=3.3e-16 Score=159.41 Aligned_cols=137 Identities=16% Similarity=0.208 Sum_probs=95.8
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc-cHHH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIAN 470 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~-Ti~e 470 (782)
.|++|++|+. |+.++|+|||||||||+++.|.+..- +..+|.++.. -.++.|...+|.. |++|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a---------~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA---------SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec---------CccCcccceEEEeccchh
Confidence 4788887765 79999999999999999999976442 1236665532 1366775556654 9999
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHH
Q 003976 471 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550 (782)
Q Consensus 471 Ni~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e 550 (782)
|+.++... ..++..+ +.+.++.+. .++|+++|+||||+++|+...
T Consensus 79 ~l~~~~s~-~~~e~~~------~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 79 DLRDGISY-FYAELRR------LKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred ccccccCh-HHHHHHH------HHHHHHhcc----------------------------CCCCeEEEEecccCCCCHHHH
Confidence 99987632 2233222 222232221 079999999999999999977
Q ss_pred HHHHH-HHHHHh-CCCeEEEEecCcchhhhc
Q 003976 551 LIVQR-ALEKIM-SNRTTIVVAHRLSTVRDV 579 (782)
Q Consensus 551 ~~i~~-~l~~~~-~~~T~i~iaHrl~~i~~a 579 (782)
..+.. .++++. ++.|+|++||.++.+...
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 66544 455543 478999999999877554
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.61 E-value=3e-15 Score=158.56 Aligned_cols=142 Identities=18% Similarity=0.266 Sum_probs=106.4
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC-HHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHH
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWLREQMGLVSQEPALFATSIANNILLGKEDASMDR 483 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~-~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~ 483 (782)
+.++|+||+||||||+++.|.|++.|.+|+|.++|+++..++ ..+++..++++||...--..++.||. |. .+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~k---~~ 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----PK---AE 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----hH---HH
Confidence 689999999999999999999999999999999999998775 56888889999997532223444431 10 00
Q ss_pred HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCC
Q 003976 484 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 563 (782)
Q Consensus 484 i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~ 563 (782)
++ ..++|+ .+|+++|+|||++ +..+...++.+..|
T Consensus 185 --------~~-----------------------------~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G 219 (270)
T TIGR02858 185 --------GM-----------------------------MMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAG 219 (270)
T ss_pred --------HH-----------------------------HHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCC
Confidence 00 455666 4999999999974 33344455555579
Q ss_pred CeEEEEecCcch--h------------hhcCEEEEEeCCEEEEecChhHHh
Q 003976 564 RTTIVVAHRLST--V------------RDVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 564 ~T~i~iaHrl~~--i------------~~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
.|+|+++|..+. + .-+||+++|++|+ ..|+.+++.
T Consensus 220 ~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 220 VSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 999999997655 3 3379999999887 677766653
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.54 E-value=1.3e-13 Score=152.94 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHhc---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh---cC
Q 003976 513 TQLSGGQKQRIAIARAVL---------RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD---VD 580 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~---------~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~---aD 580 (782)
..+|+||+|+++||+++. ++|||||||||+|.||+.....+.+.+.+. +.+++++||....+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 478999999999999885 899999999999999999999998888653 4688999998876644 46
Q ss_pred EEEEEeCCEE
Q 003976 581 TIMVLKNGQV 590 (782)
Q Consensus 581 ~I~vl~~G~i 590 (782)
+++.|++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 419
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.52 E-value=4.6e-14 Score=144.12 Aligned_cols=138 Identities=18% Similarity=0.224 Sum_probs=96.8
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE-EeccCCCccccHHH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL-VSQEPALFATSIAN 470 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~-V~Q~~~lf~~Ti~e 470 (782)
.+.+|+++++++|+.++|.|||||||||+++.+.+.. +..++|. ||-+. ..-++.|
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~d 73 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIFN 73 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccChh
Confidence 4899999999999999999999999999999998773 3344442 21111 1114444
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHH-
Q 003976 471 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES- 549 (782)
Q Consensus 471 Ni~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~- 549 (782)
||.. .++ .+..+.++.+++|+|+||+ ..+-++..+|+++|||||++++|+..
T Consensus 74 ~I~~------------------------~~~--~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 74 RLLS------------------------RLS--NDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred heeE------------------------ecC--CccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence 5422 111 1112344557899999975 45556789999999999999999974
Q ss_pred HHHHHHHHHHHh-CCCeEEEEecCcchhhhc
Q 003976 550 ELIVQRALEKIM-SNRTTIVVAHRLSTVRDV 579 (782)
Q Consensus 550 e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~a 579 (782)
.....+.++.+. .++++|++||..+.++.+
T Consensus 127 ~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 127 FAISLAILECLIKKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 333344455443 488999999999887654
No 420
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.50 E-value=3.1e-14 Score=146.83 Aligned_cols=154 Identities=18% Similarity=0.227 Sum_probs=100.5
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCcc-ccHHH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIAN 470 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~-~Ti~e 470 (782)
.+.+|++|++++ ++++|+|||||||||+++.+.+..-.. . .|.+ .+. -+.+++++.| +|. -++.|
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~---vp~--~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSF---VPA--SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCe---ecc--ccceecceee---EeccCCchh
Confidence 388999999887 999999999999999999997643111 0 1111 111 1234666654 332 25555
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh--ccCCceEEEeCC---CCCC
Q 003976 471 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV--LRNPKILLLDEA---TSAL 545 (782)
Q Consensus 471 Ni~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl--~~~p~illLDE~---tsal 545 (782)
|+..|.. -=...+..|++++ ..+|+++||||| |+++
T Consensus 85 ~ls~g~s---------------------------------------~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l 125 (216)
T cd03284 85 DLAGGRS---------------------------------------TFMVEMVETANILNNATERSLVLLDEIGRGTSTY 125 (216)
T ss_pred hhccCcc---------------------------------------hHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence 5554421 1111122344443 469999999999 9999
Q ss_pred CHHH-HHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHH
Q 003976 546 DAES-ELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 546 D~~~-e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL 599 (782)
|... ...+.+.+.+. .+.|+|++||..+..+.+|++--+++|++...++.+++
T Consensus 126 D~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 126 DGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 9864 24445555432 37899999999877777888877899998776655444
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.49 E-value=1.4e-13 Score=142.15 Aligned_cols=73 Identities=26% Similarity=0.413 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHH----HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEe
Q 003976 514 QLSGGQKQRIAIA----RAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLK 586 (782)
Q Consensus 514 ~LSgGQkQRiaiA----RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~ 586 (782)
.||||||-+++|| ..-+.++|++||||+.++||......+.+.|++..++.-+|++||+-.....||+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999997 334678999999999999999999999999999988899999999999999999998773
No 422
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.48 E-value=4.4e-14 Score=166.19 Aligned_cols=106 Identities=22% Similarity=0.380 Sum_probs=91.0
Q ss_pred HHHHHHHHhhhHhHHhcCCCCccccccCCC------CCCCHHHHHHHHHHHHhc----------cCCceEEEeCCC-CCC
Q 003976 483 RVIEAAKAANAHSFVEGLPDGYQTQVGEGG------TQLSGGQKQRIAIARAVL----------RNPKILLLDEAT-SAL 545 (782)
Q Consensus 483 ~i~~a~~~a~~~~~i~~lp~G~~t~vge~G------~~LSgGQkQRiaiARAl~----------~~p~illLDE~t-sal 545 (782)
.+.+.++..+. ++...+|+++++.+++.| .+||||||||++||||++ .+|++||||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34445554443 555578999999999988 789999999999999887 599999999998 789
Q ss_pred CHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeC-CEE
Q 003976 546 DAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN-GQV 590 (782)
Q Consensus 546 D~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~-G~i 590 (782)
|+.+...+.+.|.++ +++|+|+|||+......||++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999988 78999999999988889999999986 543
No 423
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3.7e-14 Score=152.08 Aligned_cols=211 Identities=26% Similarity=0.456 Sum_probs=138.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHH-c-CCCCCccEEEECCeeCCCcCHH-----
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ-R-LYEPTSGKILLDGHDLKSLQLK----- 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~-~-~~~~~~G~I~i~g~di~~~~~~----- 448 (782)
+|.++|.+.+-.+ ...+-|-||.|-.|..+++|||+|-|||||++-|. | +--|..=.++++-+.+.--+..
T Consensus 264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 4777877766543 23788999999999999999999999999999986 3 2233333344444332211100
Q ss_pred --HHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHH---HHHH-------hhhHhHHhcCCCCccccccCCCC-CC
Q 003976 449 --WLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIE---AAKA-------ANAHSFVEGLPDGYQTQVGEGGT-QL 515 (782)
Q Consensus 449 --~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~---a~~~-------a~~~~~i~~lp~G~~t~vge~G~-~L 515 (782)
.=.++..+.-.+.-| ...|.-|...+ .|++.+ -++. +.+...+..| |++-..-++.. .+
T Consensus 342 l~aD~kRl~lLeee~~L-----~~q~e~Gd~ta-aErl~~v~~ELraiGA~sAEarARRILAGL--GFskEMQ~rPt~kF 413 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKL-----MSQIEEGDTTA-AERLKEVADELRAIGADSAEARARRILAGL--GFSKEMQERPTTKF 413 (807)
T ss_pred HHhhHHHHHHHHHHHHH-----HHHHHcCchHH-HHHHHHHHHHHHHhccccchhHHHHHHhhc--CCChhHhcCCcccc
Confidence 000111111111111 01111121100 112211 1121 2233444444 77777777764 79
Q ss_pred CHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEE-Ee
Q 003976 516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVV-ES 593 (782)
Q Consensus 516 SgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~iv-e~ 593 (782)
|||=|-|++|||||+-.|-+|.|||||..||-..---+...|..|. +|.++|+|.-.++.+ |..|+.+|+-++- ..
T Consensus 414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYr 491 (807)
T KOG0066|consen 414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYR 491 (807)
T ss_pred CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEEecccchHHHHHHHHhhhhhhhhhhhc
Confidence 9999999999999999999999999999999998888888888774 799999999999977 8999999988764 46
Q ss_pred cChhH
Q 003976 594 GTHVD 598 (782)
Q Consensus 594 G~~~e 598 (782)
|+|.-
T Consensus 492 GNY~~ 496 (807)
T KOG0066|consen 492 GNYTL 496 (807)
T ss_pred chHHH
Confidence 76643
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.39 E-value=1.4e-12 Score=140.33 Aligned_cols=181 Identities=21% Similarity=0.397 Sum_probs=132.3
Q ss_pred EEcCCCCCcccccceEEeeCCC-----EEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEe
Q 003976 384 FAYPSRPHMVFENLNFSVDAGK-----TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVS 458 (782)
Q Consensus 384 f~y~~~~~~vL~~isl~i~~G~-----~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~ 458 (782)
++||+- ...+.++.|.|+.|+ .+...|.+|-||||++++++|..+|++| .++..++ ++|=|
T Consensus 343 y~Yp~m-~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~------~e~p~ln-------VSykp 408 (592)
T KOG0063|consen 343 YSYPKM-KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG------GEIPVLN-------VSYKP 408 (592)
T ss_pred eccCcc-eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc------Ccccccc-------eeccc
Confidence 567753 237889999999996 5788999999999999999999999875 2333343 77777
Q ss_pred ccCC-CccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEE
Q 003976 459 QEPA-LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 537 (782)
Q Consensus 459 Q~~~-lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ill 537 (782)
|... =|.+|+|+=+. +.++.+...-....++.+ |-..+..++..-.+||||+.||+|||-+|=+.+++++
T Consensus 409 qkispK~~~tvR~ll~--------~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYl 479 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLH--------TKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYL 479 (592)
T ss_pred cccCccccchHHHHHH--------HHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEE
Confidence 7642 56778876432 222222221111112211 2234445566667999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHH--hCCCeEEEEecCcchhh-hcCEEEEEeC
Q 003976 538 LDEATSALDAESELIVQRALEKI--MSNRTTIVVAHRLSTVR-DVDTIMVLKN 587 (782)
Q Consensus 538 LDE~tsalD~~~e~~i~~~l~~~--~~~~T~i~iaHrl~~i~-~aD~I~vl~~ 587 (782)
.|||.+-||++.+..--..+++. ...+|-.+|-|.+-..- -|||++|.+.
T Consensus 480 iDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 480 IDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred ecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 99999999999887777777665 35799999999986553 4899999864
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.35 E-value=1.5e-11 Score=138.48 Aligned_cols=174 Identities=21% Similarity=0.309 Sum_probs=125.0
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECC---eeCCC-----cCHHHHHhHceEEeccCCCc
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG---HDLKS-----LQLKWLREQMGLVSQEPALF 464 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g---~di~~-----~~~~~lR~~i~~V~Q~~~lf 464 (782)
+++++ |++++|++++|+|+||+|||||+++|.|+++|+.|.|.+.| .++.+ ++...+++.|.+|.+-.
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~--- 223 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD--- 223 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC---
Confidence 89999 99999999999999999999999999999999999999954 44443 34556778888886421
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCH-HHHHH-HHHHHHhccCCceEEEeCCC
Q 003976 465 ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG-GQKQR-IAIARAVLRNPKILLLDEAT 542 (782)
Q Consensus 465 ~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSg-GQkQR-iaiARAl~~~p~illLDE~t 542 (782)
+...+++..+--...+.|+... +|.|-.+--. +|+- -|-|| |++ .+.+|| .|
T Consensus 224 -------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~D--sltr~A~A~rEisl---~~ge~P------~~ 277 (438)
T PRK07721 224 -------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMD--SVTRVAMAQREIGL---AVGEPP------TT 277 (438)
T ss_pred -------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEe--ChHHHHHHHHHHHH---hcCCCC------cc
Confidence 1123344444333444455543 3666655321 2221 11111 111 234555 78
Q ss_pred CCCCHHHHHHHHHHHHHHh---CCC-----eEEEEecCcchhhhcCEEEEEeCCEEEEecChh
Q 003976 543 SALDAESELIVQRALEKIM---SNR-----TTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHV 597 (782)
Q Consensus 543 salD~~~e~~i~~~l~~~~---~~~-----T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~ 597 (782)
+++|+.....+.+.++++. +|. |+++.+|+++. .-||++.++.+|+|+..++..
T Consensus 278 ~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 278 KGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHH
Confidence 9999999999999998875 465 99999999986 779999999999999988743
No 426
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.30 E-value=4e-12 Score=130.94 Aligned_cols=144 Identities=22% Similarity=0.336 Sum_probs=86.7
Q ss_pred EEEEeCCCCCcHHHHH-HHHHcCCCC-----------------CccEEEECCeeCCCcC-HHHHHhHceEEeccC-C--C
Q 003976 406 TFAFVGPSGSGKSTII-SMVQRLYEP-----------------TSGKILLDGHDLKSLQ-LKWLREQMGLVSQEP-A--L 463 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~-~ll~~~~~~-----------------~~G~I~i~g~di~~~~-~~~lR~~i~~V~Q~~-~--l 463 (782)
+++++|++|||||||+ +++.|.+++ +.|.+.+.+.|+..-. ...+|. +++.+.. . .
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~--~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRD--GYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhH--HHhccCCEEEEE
Confidence 6899999999999999 688888765 5688888888875321 222332 2222221 1 2
Q ss_pred cccc-----------------HHHHHh---cCCC-CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCC--HHHH
Q 003976 464 FATS-----------------IANNIL---LGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS--GGQK 520 (782)
Q Consensus 464 f~~T-----------------i~eNi~---~g~~-~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LS--gGQk 520 (782)
|+.| ..+|+. .|+. +..+.++. .+. .++.....-.+-. -+..+ |-|+
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~--~~~---~~~~~~~~~~~~e-----~Sa~~~~~v~~ 158 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK--ARQ---ITFHRKKNLQYYD-----ISAKSNYNFEK 158 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC--HHH---HHHHHHcCCEEEE-----EeCCCCCCHHH
Confidence 2322 112221 1221 11111110 000 1111111111111 12223 3499
Q ss_pred HHHHHHHHhccCCceEEEeCCC-----CCCCHHHHHHHHHHHHHHh
Q 003976 521 QRIAIARAVLRNPKILLLDEAT-----SALDAESELIVQRALEKIM 561 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~t-----salD~~~e~~i~~~l~~~~ 561 (782)
|++.|||+++.+|++++||||| ++||+.+.+.+.+.++++.
T Consensus 159 ~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 159 PFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999999999999998864
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.28 E-value=8.2e-12 Score=146.52 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHHHhccC----CceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCC
Q 003976 513 TQLSGGQKQRIAIARAVLRN----PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNG 588 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~~~----p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G 588 (782)
..|||||+||++||||++.. |++|||||||++||+.+...+.+.|+++.+++|+|+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 47899999999999999985 69999999999999999999999999988899999999999999999999999987
Q ss_pred E
Q 003976 589 Q 589 (782)
Q Consensus 589 ~ 589 (782)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 428
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.27 E-value=1.8e-11 Score=126.07 Aligned_cols=134 Identities=18% Similarity=0.246 Sum_probs=90.9
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHc--CCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCcc--ccH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR--LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA--TSI 468 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~--~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~--~Ti 468 (782)
|-+|+++.=..+..++|+||+|+||||+++.+.. .. +..|...... ...++|..|...-+. .|+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 5566666422237899999999999999999973 33 5556554332 114677766532221 111
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHH
Q 003976 469 ANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548 (782)
Q Consensus 469 ~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~ 548 (782)
.+++ ..| --+-||+++|+++..+|+++|||||++++|+.
T Consensus 86 ~~~~---------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 86 SSGQ---------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hhcc---------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 1111 011 23559999999999999999999999999997
Q ss_pred -HHHHHHHHHHHHhC----CCeEEEEecCcchhhhc
Q 003976 549 -SELIVQRALEKIMS----NRTTIVVAHRLSTVRDV 579 (782)
Q Consensus 549 -~e~~i~~~l~~~~~----~~T~i~iaHrl~~i~~a 579 (782)
......+.++++.+ +.++|++||.++.++..
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 45555666666643 24899999999887664
No 429
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.27 E-value=1e-11 Score=125.09 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=55.9
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcc--CCceEEEeCCCCCCCHHHHHHH-HHHHHHHh--CCCeEEEEecCcchhhhcCEEE
Q 003976 509 GEGGTQLSGGQKQRIAIARAVLR--NPKILLLDEATSALDAESELIV-QRALEKIM--SNRTTIVVAHRLSTVRDVDTIM 583 (782)
Q Consensus 509 ge~G~~LSgGQkQRiaiARAl~~--~p~illLDE~tsalD~~~e~~i-~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~ 583 (782)
.++-..+|+|++|. ++++.. +|+++|+|||++++|+.....+ ...++.+. .+.++|++||..+..+.+|+--
T Consensus 56 ~~~~s~fs~~~~~l---~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~ 132 (185)
T smart00534 56 AQGLSTFMVEMKET---ANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHP 132 (185)
T ss_pred hccccHHHHHHHHH---HHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCc
Confidence 44456888888874 555544 9999999999999999966555 44455554 3789999999997666676533
Q ss_pred EEeCCEE
Q 003976 584 VLKNGQV 590 (782)
Q Consensus 584 vl~~G~i 590 (782)
-++++++
T Consensus 133 ~v~~~~~ 139 (185)
T smart00534 133 GVRNLHM 139 (185)
T ss_pred cceEEEE
Confidence 3344443
No 430
>PRK10869 recombination and repair protein; Provisional
Probab=99.25 E-value=1.4e-11 Score=143.69 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHHHHhcc----CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCE
Q 003976 514 QLSGGQKQRIAIARAVLR----NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 589 (782)
Q Consensus 514 ~LSgGQkQRiaiARAl~~----~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ 589 (782)
.|||||+||++|||+++. +|+++|||||+++||..+...+.+.|+++.+++|+|+|||.++.+..||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 689999999999999997 6899999999999999999999999999988899999999999999999999998754
No 431
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.23 E-value=4.6e-11 Score=143.69 Aligned_cols=148 Identities=17% Similarity=0.266 Sum_probs=98.6
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCC-CEEEEeCCCCCcHHHHHHHHHcC-CCCCccEEEECCeeCCCcCHHHHHh
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAG-KTFAFVGPSGSGKSTIISMVQRL-YEPTSGKILLDGHDLKSLQLKWLRE 452 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G-~~vaivG~sGsGKSTl~~ll~~~-~~~~~G~I~i~g~di~~~~~~~lR~ 452 (782)
+.|.++++..-+-..+. .-.+|+++.+| +.++|+||||+||||+++.+.+. +-+
T Consensus 294 ~~i~l~~~rhPll~~~~--~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a---------------------- 349 (771)
T TIGR01069 294 GKIILENARHPLLKEPK--VVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF---------------------- 349 (771)
T ss_pred CCEEEccccCceecCCc--eEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH----------------------
Confidence 35777776542211100 11368888877 89999999999999999999876 233
Q ss_pred Hce-EEeccCC-CccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 453 QMG-LVSQEPA-LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 453 ~i~-~V~Q~~~-lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
+.| +||.... -+ .+.+++... ..++ -.+.++-.++|+|++|+..|++++
T Consensus 350 q~G~~Vpa~~~~~~--~~~d~i~~~---i~~~-----------------------~si~~~LStfS~~m~~~~~il~~~- 400 (771)
T TIGR01069 350 QSGIPIPANEHSEI--PYFEEIFAD---IGDE-----------------------QSIEQNLSTFSGHMKNISAILSKT- 400 (771)
T ss_pred HhCCCccCCccccc--cchhheeee---cChH-----------------------hHHhhhhhHHHHHHHHHHHHHHhc-
Confidence 333 5555432 11 122332111 1111 011233467999999999999987
Q ss_pred cCCceEEEeCCCCCCCHHHHHHH-HHHHHHHh-CCCeEEEEecCcch
Q 003976 531 RNPKILLLDEATSALDAESELIV-QRALEKIM-SNRTTIVVAHRLST 575 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i-~~~l~~~~-~~~T~i~iaHrl~~ 575 (782)
.+|+++|||||++++|+.....+ ...++.+. ++.++|++||..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 88999999999999999977666 44555543 57899999998764
No 432
>PRK13695 putative NTPase; Provisional
Probab=99.20 E-value=2.1e-11 Score=121.46 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=65.5
Q ss_pred cCCCCCCCHHHHHHHHHHHHhccCCceEEEeC--CCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEe
Q 003976 509 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDE--ATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLK 586 (782)
Q Consensus 509 ge~G~~LSgGQkQRiaiARAl~~~p~illLDE--~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~ 586 (782)
+.....+||+++-++.+++..+++|+++++|| |+..+|....+.+.+++ ..++++|+++|.-..-..+|+|..+.
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~ 149 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRP 149 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccC
Confidence 34455799999999999999999999999999 44455555555555554 25899999999965556799999999
Q ss_pred CCEEEEe
Q 003976 587 NGQVVES 593 (782)
Q Consensus 587 ~G~ive~ 593 (782)
+|+|.+-
T Consensus 150 ~~~i~~~ 156 (174)
T PRK13695 150 GGRVYEL 156 (174)
T ss_pred CcEEEEE
Confidence 9999876
No 433
>PRK14079 recF recombination protein F; Provisional
Probab=99.19 E-value=2.7e-10 Score=125.89 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHhc---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEE
Q 003976 513 TQLSGGQKQRIAIARAVL---------RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIM 583 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~---------~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~ 583 (782)
.-+|+||++++++|+.+. .+|||+|||||+|.||......+.+.|.+.. .+.|..|+ .-..+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE---APPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC---CCCCCceEE
Confidence 357999999999999998 8999999999999999999998888885432 33333332 335589999
Q ss_pred EEeCCEEEEec
Q 003976 584 VLKNGQVVESG 594 (782)
Q Consensus 584 vl~~G~ive~G 594 (782)
.+++|++.-+.
T Consensus 337 ~~~~~~~~~~~ 347 (349)
T PRK14079 337 RIEAGVFTPEA 347 (349)
T ss_pred EEeccEecCCC
Confidence 99999886443
No 434
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.16 E-value=1.5e-10 Score=133.79 Aligned_cols=109 Identities=28% Similarity=0.442 Sum_probs=92.8
Q ss_pred HhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC--CceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEe
Q 003976 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN--PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVA 570 (782)
Q Consensus 494 ~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~--p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~ia 570 (782)
..|+...--||-|. ...-.+||||+.|||-||+.+-.. -=+++||||+.+|-+.--.++.+.|++++ .|.|+|+|.
T Consensus 462 L~fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVE 540 (935)
T COG0178 462 LGFLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVE 540 (935)
T ss_pred HHHHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEe
Confidence 45666665566665 344569999999999999999887 35789999999999996667778888876 589999999
Q ss_pred cCcchhhhcCEEEEE------eCCEEEEecChhHHhhcC
Q 003976 571 HRLSTVRDVDTIMVL------KNGQVVESGTHVDLISKG 603 (782)
Q Consensus 571 Hrl~~i~~aD~I~vl------~~G~ive~G~~~eL~~~~ 603 (782)
|+.++++.||+|+=| ..|+|+.+|+++|++++.
T Consensus 541 HDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 541 HDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred cCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 999999999999998 579999999999999875
No 435
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.13 E-value=6.6e-10 Score=115.83 Aligned_cols=158 Identities=15% Similarity=0.225 Sum_probs=90.7
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHH-HHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTI-ISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl-~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
|.+++++..++. -+++|+.+.|+|++||||||+ .+++.++.++....+++... .+.+++.++..
T Consensus 8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e----~~~~~~~~~~~ 72 (230)
T PRK08533 8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ----LTTTEFIKQMM 72 (230)
T ss_pred EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHH
Confidence 555666655532 279999999999999999999 68889887765544444431 12222222210
Q ss_pred EEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc----c
Q 003976 456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL----R 531 (782)
Q Consensus 456 ~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~----~ 531 (782)
.+|.+ .++. ...-.+ .++. + ...+|+++.++-.+++.+- .
T Consensus 73 -----------------~~g~~---~~~~---~~~~~l-~~~~---------~---~~~~~~~~~~~~~l~~il~~~~~~ 116 (230)
T PRK08533 73 -----------------SLGYD---INKK---LISGKL-LYIP---------V---YPLLSGNSEKRKFLKKLMNTRRFY 116 (230)
T ss_pred -----------------HhCCc---hHHH---hhcCcE-EEEE---------e---cccccChHHHHHHHHHHHHHHHhc
Confidence 12211 1110 000000 0000 0 0135666655544444433 3
Q ss_pred CCceEEEeCCCCCC----CHHHHHHHHHHHHHHhC-CCeEEEEecCcchhhh---------cCEEEEEe
Q 003976 532 NPKILLLDEATSAL----DAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD---------VDTIMVLK 586 (782)
Q Consensus 532 ~p~illLDE~tsal----D~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i~~---------aD~I~vl~ 586 (782)
+|+++++||||+.+ |+...+.+.+.++++.+ |+|+ ++||....+.. ||-|+.|+
T Consensus 117 ~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 117 EKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred CCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 69999999999999 77767778888877744 6655 55565443221 46677665
No 436
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.12 E-value=8.8e-11 Score=127.71 Aligned_cols=143 Identities=15% Similarity=0.220 Sum_probs=100.4
Q ss_pred ceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCC
Q 003976 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK 476 (782)
Q Consensus 397 isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~ 476 (782)
+++.+++|+.++|+||+||||||++++|+++++|..|.+.++ |..++.+.. ++.+.++.+.. + -+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~----~-------~~~ 202 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKG----G-------QGL 202 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCC----C-------CCc
Confidence 457788999999999999999999999999999999988885 333433221 11122111100 0 000
Q ss_pred CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHH
Q 003976 477 EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556 (782)
Q Consensus 477 ~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~ 556 (782)
...+ ..=.++++|-.+|+++++|||.+ . ...+.
T Consensus 203 ~~~~----------------------------------------~~~~l~~~Lr~~pd~ii~gE~r~---~----e~~~~ 235 (308)
T TIGR02788 203 AKVT----------------------------------------PKDLLQSCLRMRPDRIILGELRG---D----EAFDF 235 (308)
T ss_pred CccC----------------------------------------HHHHHHHHhcCCCCeEEEeccCC---H----HHHHH
Confidence 0011 11245677888999999999996 2 23445
Q ss_pred HHHHhCCC-eEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHh
Q 003976 557 LEKIMSNR-TTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 557 l~~~~~~~-T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
++....|. +++.++|-.+.....||+..|..|++...|...+.+
T Consensus 236 l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 236 IRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 55554554 569999999987888999999999999999888876
No 437
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.09 E-value=2.3e-10 Score=123.61 Aligned_cols=171 Identities=26% Similarity=0.380 Sum_probs=114.0
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEE--C---------CeeCCCcC----HHHHHh--HceEEeccCCCc
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL--D---------GHDLKSLQ----LKWLRE--QMGLVSQEPALF 464 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i--~---------g~di~~~~----~~~lR~--~i~~V~Q~~~lf 464 (782)
.||+..++||.+|-||||-++.|.|-.+|.-|.--. | |-.+..+- .+.++. ..-||-|-|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 489999999999999999999999999987664311 1 11111110 001110 012333334444
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCC
Q 003976 465 ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544 (782)
Q Consensus 465 ~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsa 544 (782)
.+++.+++.--.+.- ...++|..-++... ....-.+||||+-||.|||-+.++++|++++|||.|-
T Consensus 178 k~~v~~~l~~~~~r~---~~~~~~~~~~L~~~-----------~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERD---NKEEVCDQLDLNNL-----------LDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHHHhhcc---cHHHHHHHHHHhhH-----------HHhhhhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 455555543221111 22233322222221 2223357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEe
Q 003976 545 LDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLK 586 (782)
Q Consensus 545 lD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~ 586 (782)
||...+-.--..|+.+. .++=+|+|-|+|+.+.. .|-|.++-
T Consensus 244 LDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 244 LDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred chHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 99998888888888775 58999999999999865 58877774
No 438
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.07 E-value=3.6e-10 Score=116.87 Aligned_cols=137 Identities=15% Similarity=0.228 Sum_probs=83.4
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHc-CCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCcc-ccHH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR-LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIA 469 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~-~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~-~Ti~ 469 (782)
.+.+|+++.+++|++++|.||+|+||||+++.+.+ .+.++.|.....- .. ++++..| +|. -...
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~----------~~~~~~~---i~~~~~~~ 84 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA----------TLSIFDS---VLTRMGAS 84 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce----------EEeccce---EEEEecCc
Confidence 48999999999999999999999999999999999 7778777754432 11 2333322 121 1112
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHH
Q 003976 470 NNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549 (782)
Q Consensus 470 eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~ 549 (782)
|++.-|.... ..|+ +|++-.=.-..+|+++|||||.++.|+..
T Consensus 85 d~~~~~~StF-~~e~------------------------------------~~~~~il~~~~~~sLvllDE~~~gT~~~d 127 (222)
T cd03287 85 DSIQHGMSTF-MVEL------------------------------------SETSHILSNCTSRSLVILDELGRGTSTHD 127 (222)
T ss_pred cccccccchH-HHHH------------------------------------HHHHHHHHhCCCCeEEEEccCCCCCChhh
Confidence 2222221100 1122 22221111235799999999966666553
Q ss_pred HHHH-HHHHHHHh--CCCeEEEEecCcchhhhc
Q 003976 550 ELIV-QRALEKIM--SNRTTIVVAHRLSTVRDV 579 (782)
Q Consensus 550 e~~i-~~~l~~~~--~~~T~i~iaHrl~~i~~a 579 (782)
...+ ...++.+. .+.|+|++||..+.....
T Consensus 128 ~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 128 GIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 3332 23333332 378999999998875443
No 439
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.06 E-value=8.2e-10 Score=133.37 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=95.2
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce-EEeccCCCccccHHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG-LVSQEPALFATSIANN 471 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~-~V~Q~~~lf~~Ti~eN 471 (782)
|=+|+++. +.+..+.|.||+++||||+++.+.-. .+-.++| +||-+.. ..-++.++
T Consensus 317 Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~---------------------~~maq~G~~vpa~~~-~~i~~~~~ 373 (782)
T PRK00409 317 VPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLA---------------------ALMAKSGLPIPANEP-SEIPVFKE 373 (782)
T ss_pred ECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHH---------------------HHHHHhCCCcccCCC-ccccccce
Confidence 33444443 34567999999999999999998421 1222344 4444310 01122223
Q ss_pred HhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHH
Q 003976 472 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 551 (782)
Q Consensus 472 i~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~ 551 (782)
|... -|.+..+..+-+.+|+|++|+..|+|++ .+|+++|||||++++|+....
T Consensus 374 i~~~--------------------------ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ 426 (782)
T PRK00409 374 IFAD--------------------------IGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGA 426 (782)
T ss_pred EEEe--------------------------cCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHH
Confidence 3110 0222223345578999999999999999 899999999999999999776
Q ss_pred HHHHH-HHHHh-CCCeEEEEecCcchhhhc-CEEEEEeCCEEE
Q 003976 552 IVQRA-LEKIM-SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVV 591 (782)
Q Consensus 552 ~i~~~-l~~~~-~~~T~i~iaHrl~~i~~a-D~I~vl~~G~iv 591 (782)
.+..+ ++.+. .+.++|++||..+....+ |+..| .++.+.
T Consensus 427 ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v-~~~~~~ 468 (782)
T PRK00409 427 ALAISILEYLRKRGAKIIATTHYKELKALMYNREGV-ENASVE 468 (782)
T ss_pred HHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe-EEEEEE
Confidence 66544 44443 478999999998776554 44433 345543
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.03 E-value=1.9e-09 Score=108.14 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=63.2
Q ss_pred CccccccCCCCCCCHHHHH------HHHHHHHhccCCceEEEeCCCCCCC---HHHHHHHHHHHHHHh-CCCeEEEEecC
Q 003976 503 GYQTQVGEGGTQLSGGQKQ------RIAIARAVLRNPKILLLDEATSALD---AESELIVQRALEKIM-SNRTTIVVAHR 572 (782)
Q Consensus 503 G~~t~vge~G~~LSgGQkQ------RiaiARAl~~~p~illLDE~tsalD---~~~e~~i~~~l~~~~-~~~T~i~iaHr 572 (782)
|....+......+|+||+| ....+.+.-.+|+++++||||+.+| ......+.+.++.+. .|.|+|+++|.
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444455566788999999 4444444567999999999999999 667777777776654 47899999998
Q ss_pred cch---------h-hhcCEEEEEeC
Q 003976 573 LST---------V-RDVDTIMVLKN 587 (782)
Q Consensus 573 l~~---------i-~~aD~I~vl~~ 587 (782)
... + .-||.|+.|+.
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEEE
Confidence 764 3 33899999973
No 441
>PRK01156 chromosome segregation protein; Provisional
Probab=99.03 E-value=5.6e-10 Score=138.45 Aligned_cols=76 Identities=25% Similarity=0.408 Sum_probs=67.1
Q ss_pred CCCCCCHHHHHHHHH------HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-C--C-CeEEEEecCcchhhhcC
Q 003976 511 GGTQLSGGQKQRIAI------ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-S--N-RTTIVVAHRLSTVRDVD 580 (782)
Q Consensus 511 ~G~~LSgGQkQRiai------ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~--~-~T~i~iaHrl~~i~~aD 580 (782)
....||||||||+|| ||+++.+|++++|||||++||+.....+.+.+.... . + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 599999999999999999999999998888887532 2 2 48999999999999999
Q ss_pred EEEEEe
Q 003976 581 TIMVLK 586 (782)
Q Consensus 581 ~I~vl~ 586 (782)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 442
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.02 E-value=2.2e-10 Score=127.76 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=56.4
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc-EEEECCeeCCCcCHHHHHhHceEEeccC
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-KILLDGHDLKSLQLKWLREQMGLVSQEP 461 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G-~I~i~g~di~~~~~~~lR~~i~~V~Q~~ 461 (782)
+|+++|+++++||.++|+||||||||||++ .++..|++| +|.+||+++...+...++.-= +|.|+.
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 899999999999999999999999999999 778888888 799999999887755443221 788863
No 443
>PRK03918 chromosome segregation protein; Provisional
Probab=99.00 E-value=6.7e-10 Score=137.69 Aligned_cols=75 Identities=28% Similarity=0.382 Sum_probs=67.2
Q ss_pred CCCCHHHHH------HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEE
Q 003976 513 TQLSGGQKQ------RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVL 585 (782)
Q Consensus 513 ~~LSgGQkQ------RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl 585 (782)
..|||||+| |+||||+++.+|+++||||||++||+.+...+.+.|..+. .+.|+|+|||+......||++++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 579999999 5667778999999999999999999999999999998865 367999999999988889999999
Q ss_pred eC
Q 003976 586 KN 587 (782)
Q Consensus 586 ~~ 587 (782)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
No 444
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.99 E-value=7.4e-11 Score=140.16 Aligned_cols=174 Identities=14% Similarity=0.132 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 221 STLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESY-----SHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWA 295 (782)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~-----~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 295 (782)
++.........+...+.+.|++.++.+||..+.|......| .....+..+...+..........+...+......
T Consensus 29 ~~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~ 108 (644)
T PRK10733 29 GRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFP 108 (644)
T ss_pred cccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHH
Confidence 33444445555667788899999999999999887665555 4444455554444443333333344455556678
Q ss_pred HHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 003976 296 LLLWYAGILVRHGDTNGG---KAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPK 372 (782)
Q Consensus 296 ~~l~~G~~lv~~g~~t~G---~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 372 (782)
+++|+|.+++..|.++.| .++++.........+ ..+...+..+.....+.+|+.++++...+ + .
T Consensus 109 ~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~---~--~------- 175 (644)
T PRK10733 109 MLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLRE---P--S------- 175 (644)
T ss_pred HHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhC---H--H-------
Confidence 888999999999999988 554432222111112 34444556666666777777777653211 0 0
Q ss_pred CcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 373 LAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 373 ~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
..+++..++++| +.|+||+||||||+++.+.+...
T Consensus 176 --------------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 --------------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred --------------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 001122245666 99999999999999999988664
No 445
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.97 E-value=7.3e-10 Score=141.16 Aligned_cols=75 Identities=25% Similarity=0.325 Sum_probs=68.8
Q ss_pred CCCCCCHHHHHHHHHHHHh----ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEE
Q 003976 511 GGTQLSGGQKQRIAIARAV----LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 585 (782)
Q Consensus 511 ~G~~LSgGQkQRiaiARAl----~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl 585 (782)
....||||||||++|||++ +++||++||||||++||+.+...+.+.|.++.++.|+|+|||++..+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 4468999999999999998 57889999999999999999999999999887788999999999999999999755
No 446
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=1.3e-09 Score=136.87 Aligned_cols=77 Identities=22% Similarity=0.239 Sum_probs=69.6
Q ss_pred CCCCCHHHHHHHHHHHHhcc----------CCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-c
Q 003976 512 GTQLSGGQKQRIAIARAVLR----------NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-V 579 (782)
Q Consensus 512 G~~LSgGQkQRiaiARAl~~----------~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-a 579 (782)
..+||||+++|++||+||.. +|++|+|||||++||+++...+.++|+++. .|+|+++|||....... +
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 46899999999999999985 799999999999999999999999998875 57999999999988755 7
Q ss_pred CEEEEEeCC
Q 003976 580 DTIMVLKNG 588 (782)
Q Consensus 580 D~I~vl~~G 588 (782)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999764
No 447
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.96 E-value=1.9e-09 Score=131.39 Aligned_cols=68 Identities=24% Similarity=0.332 Sum_probs=59.6
Q ss_pred hccCCceEEEeCCCCCC-CHHHHHHHHHHHHHHh-CCCeEEEEecCcchh----------hhcCEEEEEeCCEEEEecCh
Q 003976 529 VLRNPKILLLDEATSAL-DAESELIVQRALEKIM-SNRTTIVVAHRLSTV----------RDVDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 529 l~~~p~illLDE~tsal-D~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i----------~~aD~I~vl~~G~ive~G~~ 596 (782)
+..+|+++++|||+++| |+...+.+.+.+++.+ .|.++|++||.++.+ ++||..++|.+|++.+.|+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 46899999999999999 6889999999998875 478999999999887 47999999999999877743
No 448
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.95 E-value=1.3e-09 Score=111.04 Aligned_cols=119 Identities=23% Similarity=0.372 Sum_probs=79.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCCC-ccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHH
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEPT-SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRV 484 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~~-~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i 484 (782)
.+.|+||+||||||+++.|.+.+++. .|.|..-..++. +... ...+++.|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~------------------------ 54 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQR------------------------ 54 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeec------------------------
Confidence 68999999999999999999998754 567665443331 1100 001111111
Q ss_pred HHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCC
Q 003976 485 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 564 (782)
Q Consensus 485 ~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~ 564 (782)
.+|.....++. ++++|+..+|+++++||+. |.++ +..+++....|.
T Consensus 55 ----------------------~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~---~~~~l~~a~~G~ 100 (198)
T cd01131 55 ----------------------EVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLET---IRLALTAAETGH 100 (198)
T ss_pred ----------------------ccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHH---HHHHHHHHHcCC
Confidence 11211112221 4889999999999999996 5554 344444455689
Q ss_pred eEEEEecCcchhhhcCEEEEEe
Q 003976 565 TTIVVAHRLSTVRDVDTIMVLK 586 (782)
Q Consensus 565 T~i~iaHrl~~i~~aD~I~vl~ 586 (782)
+++.++|..+.....||++.|-
T Consensus 101 ~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 101 LVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred EEEEEecCCcHHHHHhHHHhhc
Confidence 9999999999998899997774
No 449
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.94 E-value=2.3e-09 Score=118.03 Aligned_cols=83 Identities=17% Similarity=0.322 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccc-----------cceEEeeCCCEEEE
Q 003976 341 KGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFE-----------NLNFSVDAGKTFAF 409 (782)
Q Consensus 341 ~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~-----------~isl~i~~G~~vai 409 (782)
++..+.+|++++++.++.. +..+....+.|+|+||+|.||+.. .+|+ |+++.|.+||+++|
T Consensus 102 R~~~~~ER~~~Ll~v~~vn-------~~~~e~~~~ri~Fe~LTf~YP~er-~~Le~~~~~~~~R~id~~~pig~Gq~~~I 173 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVN-------GDDPEKAKNRVLFENLTPLYPNER-LRLETSTEDLSTRVLDLFAPIGKGQRGLI 173 (415)
T ss_pred eccccHhHHHHHhCCCccC-------CCCccccCCCeEEEEeeecCCCcc-ceeecCccccceeeeeeEEEeCCCCEEEE
Confidence 4556889999999876542 122334567899999999999643 5896 99999999999999
Q ss_pred eCCCCCcHHHHHHHHHcCCCCC
Q 003976 410 VGPSGSGKSTIISMVQRLYEPT 431 (782)
Q Consensus 410 vG~sGsGKSTl~~ll~~~~~~~ 431 (782)
|||+|||||||+++|.+.+...
T Consensus 174 vG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 174 VAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred ECCCCCChhHHHHHHHHhhccc
Confidence 9999999999999999998654
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.93 E-value=9e-09 Score=99.84 Aligned_cols=129 Identities=19% Similarity=0.178 Sum_probs=79.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHH
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVI 485 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~ 485 (782)
.++|.||+|+||||+++.+++...+..|.+.+-+.+... .. ..++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~------------------~~~~~~~~~--------- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EE------------------LTERLIGES--------- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HH------------------HHHHHhhhh---------
Confidence 378999999999999999999887766666554432111 11 111110000
Q ss_pred HHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCH----------HHHHHHHH
Q 003976 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA----------ESELIVQR 555 (782)
Q Consensus 486 ~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~----------~~e~~i~~ 555 (782)
....+++ ...+.......+.++.++++.+++...+|+++++||+++-++. ...+.+.+
T Consensus 51 -----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (165)
T cd01120 51 -----------LKGALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE 118 (165)
T ss_pred -----------hcccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 0000111 1112222223455666788999999999999999999965544 43455555
Q ss_pred HHHHHh-CCCeEEEEecCcchh
Q 003976 556 ALEKIM-SNRTTIVVAHRLSTV 576 (782)
Q Consensus 556 ~l~~~~-~~~T~i~iaHrl~~i 576 (782)
.+.... .+.|+|+++|.....
T Consensus 119 l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 119 LLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHhcCCceEEEEEecCCcc
Confidence 554443 378999999987654
No 451
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.88 E-value=2.9e-09 Score=135.70 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHHHHHhc----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeC
Q 003976 513 TQLSGGQKQRIAIARAVL----RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 587 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~----~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~ 587 (782)
..||||||++++||+++. ++||++|||||+++||+.....+.+.|.++.++.++|+|||+..++..||+++.+..
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 479999999999999997 578999999999999999999999999988778899999999999999999988753
No 452
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.87 E-value=3.7e-09 Score=107.94 Aligned_cols=69 Identities=26% Similarity=0.384 Sum_probs=60.2
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCC------------CCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHH
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYE------------PTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIA 469 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~------------~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~ 469 (782)
++|++++|+||||||||||+++|.+.++ |..|+ ++|.|+..++.+.+++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999986 88888 699999999999888864 578888899998
Q ss_pred HHHhcCC
Q 003976 470 NNILLGK 476 (782)
Q Consensus 470 eNi~~g~ 476 (782)
+| .||.
T Consensus 78 ~~-~y~~ 83 (205)
T PRK00300 78 GN-YYGT 83 (205)
T ss_pred Cc-cccC
Confidence 88 3654
No 453
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.87 E-value=1.1e-05 Score=86.71 Aligned_cols=221 Identities=9% Similarity=-0.020 Sum_probs=148.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 57 LGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQ 136 (782)
Q Consensus 57 ~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~ 136 (782)
++.++...+.-.+...-|.+.+.+... +.+.+...+ ..++++++...++.....++....+.+.-..|-+++.+
T Consensus 34 ~l~l~~~~lsv~~~~~~g~~~~aL~~~--d~~~f~~~l----~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~ 107 (281)
T PF06472_consen 34 LLLLARVYLSVRINFWNGDFYNALQQK--DLQAFWRLL----LLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHD 107 (281)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhc--CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555666678888887542 333343332 33333344444444444444444444444444444444
Q ss_pred HHHcCChhhhhcCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 003976 137 SVLKKDMSFFDTEARDS---NIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTL-LTLAVVPLIAVA 212 (782)
Q Consensus 137 ~ll~~~~~~fd~~~~~G---~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~l-v~l~~~pl~~~~ 212 (782)
+-++-. .||.-....+ ..=.|+++|++..-+...+....++..++.++....++...+..++. ++++...+..++
T Consensus 108 ~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~ 186 (281)
T PF06472_consen 108 RYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLI 186 (281)
T ss_pred HHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 444333 5665321122 33469999999999888888888888888777766666666665655 666677777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 213 GGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVG 284 (782)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 284 (782)
..++++.+.+...++++..++.........++-+.|-.+++|+.|.++..+..++..+...+..........
T Consensus 187 ~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~ 258 (281)
T PF06472_consen 187 THWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGF 258 (281)
T ss_pred HHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999988877776665555544333
No 454
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.86 E-value=6.5e-08 Score=90.38 Aligned_cols=117 Identities=37% Similarity=0.480 Sum_probs=85.0
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCCCc-cEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCH
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTS-GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASM 481 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~~~-G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~ 481 (782)
+|..+.|+||+||||||+++.|.+.+.... +.+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999988765 5666666433322211111
Q ss_pred HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHH------
Q 003976 482 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR------ 555 (782)
Q Consensus 482 ~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~------ 555 (782)
............+++.++..+++|-..+|+++++||+....+.........
T Consensus 51 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 223344455778999999999999999999999999999999997766553
Q ss_pred -HHHHHhCCCeEEEEecC
Q 003976 556 -ALEKIMSNRTTIVVAHR 572 (782)
Q Consensus 556 -~l~~~~~~~T~i~iaHr 572 (782)
.......+..+|.++|.
T Consensus 108 ~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 108 LLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHhcCCCEEEEEeCC
Confidence 22233456677777774
No 455
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.84 E-value=1.3e-08 Score=114.17 Aligned_cols=168 Identities=17% Similarity=0.205 Sum_probs=117.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.++-++++-.|+.. -.+++++ |++.+||+++|+|++|+|||||++.|.|..+|+.|.|.+.|..-+
T Consensus 130 ~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~------------ 195 (432)
T PRK06793 130 AFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR------------ 195 (432)
T ss_pred chheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc------------
Confidence 35666677666543 2378885 999999999999999999999999999999999998877774322
Q ss_pred EEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc-----
Q 003976 456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL----- 530 (782)
Q Consensus 456 ~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~----- 530 (782)
+++|.+.. .++..++. .|.+=-.-.+-|.|+|+|.+.+.+.+
T Consensus 196 -----------ev~e~~~~------------~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr 242 (432)
T PRK06793 196 -----------EVKDFIRK------------ELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFR 242 (432)
T ss_pred -----------cHHHHHHH------------Hhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 23332211 11110110 11222334678999999999999888
Q ss_pred --cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCEEEEecC
Q 003976 531 --RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595 (782)
Q Consensus 531 --~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~ 595 (782)
.++-++++||+|...|+. +.|-.++.+.. .|.|..+-+|-.+.++.|-+ .++|.|...++
T Consensus 243 ~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 243 DQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 788999999999999997 55555555543 47788888884334455554 47888876655
No 456
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.82 E-value=6.8e-05 Score=83.87 Aligned_cols=191 Identities=8% Similarity=-0.097 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 156 IFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQL-------------TLLTLAVVPLIAVAGGAYTITMST 222 (782)
Q Consensus 156 ~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L-------------~lv~l~~~pl~~~~~~~~~~~~~~ 222 (782)
-.|+++|+...-+...+....++.++++++.-+.++..+|..+ ..++++...+..++..++++++.+
T Consensus 191 DQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~ 270 (409)
T PRK11098 191 AQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPG 270 (409)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 4689999998888777777778888887777777777766553 222233333344455667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 223 LSEKGEAAYGEAGKVAEEIISQVRAVYAFVGE-AKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYA 301 (782)
Q Consensus 223 ~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e-~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G 301 (782)
..-++++..++....+.-.=++.+ +.| ....++|.+..+.+.+...+......... ....+...+-+.+.
T Consensus 271 Lnf~qqr~EAdFR~~LVrvrenaE-----~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~f~~----~y~~~~~i~P~iv~ 341 (409)
T PRK11098 271 LEFKNQRVEAAYRKELVYGEDDAD-----RATPPTVRELFSNVRKNYFRLYFHYMYFNIARI----LYLQVDNVFGLFLL 341 (409)
T ss_pred hHHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 777777776666554332222222 122 22334444444444444333333322222 22233333333345
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003976 302 GILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKE 355 (782)
Q Consensus 302 ~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~ 355 (782)
+..+..|++|.|.+.....++.....+++.+...+..+.+-++..+|+.++.+.
T Consensus 342 aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 342 FPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667789999999998887777777788888999999999999999999988754
No 457
>PRK12369 putative transporter; Reviewed
Probab=98.81 E-value=9e-05 Score=81.11 Aligned_cols=192 Identities=9% Similarity=-0.056 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 157 FHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTL------------LTLAVVPLIAVAGGAYTITMSTLS 224 (782)
Q Consensus 157 srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~l------------v~l~~~pl~~~~~~~~~~~~~~~~ 224 (782)
.|+++|++..-+..-+....++.++++++.-+.++..++..+++ ++++...+..++..++++++.+..
T Consensus 118 QRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln 197 (326)
T PRK12369 118 QRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLE 197 (326)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhh
Confidence 69999999988887777778888888777777777666644332 223333334445566777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 225 EKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGIL 304 (782)
Q Consensus 225 ~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~l 304 (782)
-++++..++....+.-.=++-+. +.-.+...++|.+..+...+...+.........+ ...+..++-..+.+..
T Consensus 198 ~~qq~~EAdFR~~Lvrvre~ae~---~~E~~~l~~~f~~v~~n~~~~~~~~~~l~~~~~~----y~~~~~i~p~li~aP~ 270 (326)
T PRK12369 198 YNNQKVEAAFRKELVYAEDDKKN---YAKPETLIELFTGLRFNYFRLFLHYGYFNIWLIS----FSQMMVIVPYLIMAPG 270 (326)
T ss_pred HHHHHHHHHHHHHHHhhccchhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 77766666654432221111111 1111334445555555544444443333322222 2223333333345667
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003976 305 VRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKE 355 (782)
Q Consensus 305 v~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~ 355 (782)
...|.++.|.+.....++.....+++.+...+..+.+=.+..+|+.++.+.
T Consensus 271 y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 271 LFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred HHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999998887777777778889999999999999999999988653
No 458
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.75 E-value=9.4e-08 Score=99.89 Aligned_cols=140 Identities=11% Similarity=0.081 Sum_probs=79.8
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHH-hcCCCC
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI-LLGKED 478 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi-~~g~~~ 478 (782)
=+|+|..+.|.|++||||||+...++-..-...+. +.|+..|-.. ..+.+|. .+|-
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~-------------------~~y~~~e~~~--~~~~~~~~~~g~-- 77 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKK-------------------VYVITTENTS--KSYLKQMESVKI-- 77 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCE-------------------EEEEEcCCCH--HHHHHHHHHCCC--
Confidence 48999999999999999999998875221112222 3444432111 1122221 1221
Q ss_pred CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc--CCceEEEeCCCCCCC---HHHHHHH
Q 003976 479 ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR--NPKILLLDEATSALD---AESELIV 553 (782)
Q Consensus 479 ~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~--~p~illLDE~tsalD---~~~e~~i 553 (782)
+.++... .+...++..-|. .....|.++++.+...+..+. +|+++++||||+.+| .+.-..+
T Consensus 78 -~~~~~~~----~g~l~i~~~~~~--------~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~ 144 (234)
T PRK06067 78 -DISDFFL----WGYLRIFPLNTE--------GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNF 144 (234)
T ss_pred -ChhHHHh----CCCceEEecccc--------ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHH
Confidence 1111000 000011111111 123456789999999999998 999999999996554 3333344
Q ss_pred HHHHHHH-hCCCeEEEEecCcch
Q 003976 554 QRALEKI-MSNRTTIVVAHRLST 575 (782)
Q Consensus 554 ~~~l~~~-~~~~T~i~iaHrl~~ 575 (782)
.+.++.+ .++.|+++++|....
T Consensus 145 l~~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 145 LTEAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred HHHHHHHHhCCCEEEEEecCCcC
Confidence 3445443 357899999997654
No 459
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.75 E-value=1.5e-08 Score=104.71 Aligned_cols=64 Identities=23% Similarity=0.358 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHhccCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCcchh
Q 003976 513 TQLSGGQKQRIAIARAVLRNP---KILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTV 576 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~~~p---~illLDE~tsalD~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i 576 (782)
..+|.|+||.+.|+-+++..+ .++++|||-++|.|...+.+.+.|.+..+ +.-+|+.||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 356999999999999988877 89999999999999999999999988776 78999999997654
No 460
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.73 E-value=5.6e-08 Score=100.34 Aligned_cols=130 Identities=19% Similarity=0.314 Sum_probs=82.1
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC--------CCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCC
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL--------YEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPAL 463 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~--------~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~l 463 (782)
.|-+|++|++++|++++|.||+|+||||+++.+... |-|.+- - .++++ ..+
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~-~-----------------~i~~~---~~i 76 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKS-M-----------------RLSLV---DRI 76 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccc-c-----------------Eeccc---cEE
Confidence 488999999999999999999999999999987643 222210 0 11111 112
Q ss_pred cc-ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCC
Q 003976 464 FA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 542 (782)
Q Consensus 464 f~-~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~t 542 (782)
|. -...||+..|.... ..|+ +|++-.=....+|.++|||||.
T Consensus 77 ~~~~~~~d~~~~~~StF-~~e~------------------------------------~~~~~il~~~~~~sLvLlDE~~ 119 (218)
T cd03286 77 FTRIGARDDIMKGESTF-MVEL------------------------------------SETANILRHATPDSLVILDELG 119 (218)
T ss_pred EEecCcccccccCcchH-HHHH------------------------------------HHHHHHHHhCCCCeEEEEeccc
Confidence 22 12333443332111 1122 2221111123568999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHhC--CCeEEEEecCcchhhhc
Q 003976 543 SALDAESELIVQRA-LEKIMS--NRTTIVVAHRLSTVRDV 579 (782)
Q Consensus 543 salD~~~e~~i~~~-l~~~~~--~~T~i~iaHrl~~i~~a 579 (782)
++.|+.....+..+ ++.+.+ +.++|++||..+.....
T Consensus 120 ~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 120 RGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred CCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 99999976666666 555544 78999999998876653
No 461
>PRK02224 chromosome segregation protein; Provisional
Probab=98.73 E-value=2e-08 Score=124.54 Aligned_cols=76 Identities=29% Similarity=0.373 Sum_probs=66.9
Q ss_pred CCCCHHHHH------HHHHHHHhccC------CceEEEeCCCCCCCHHHHHHHHHHHHHHhC-C-CeEEEEecCcchhhh
Q 003976 513 TQLSGGQKQ------RIAIARAVLRN------PKILLLDEATSALDAESELIVQRALEKIMS-N-RTTIVVAHRLSTVRD 578 (782)
Q Consensus 513 ~~LSgGQkQ------RiaiARAl~~~------p~illLDE~tsalD~~~e~~i~~~l~~~~~-~-~T~i~iaHrl~~i~~ 578 (782)
..||||||| |+|+||++..+ ++++||||||++||+.....+.+.|..+.. | .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 267999999999999999999998888753 4 489999999999999
Q ss_pred cCEEEEEeCC
Q 003976 579 VDTIMVLKNG 588 (782)
Q Consensus 579 aD~I~vl~~G 588 (782)
||++++|.+.
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999753
No 462
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.71 E-value=2.9e-08 Score=124.44 Aligned_cols=77 Identities=29% Similarity=0.292 Sum_probs=64.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcc--------CCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhc-C
Q 003976 511 GGTQLSGGQKQRIAIARAVLR--------NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDV-D 580 (782)
Q Consensus 511 ~G~~LSgGQkQRiaiARAl~~--------~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~a-D 580 (782)
...+|||||+|+++|||||.. +|++|+|||||++||+.+...+.+.|.++. .|+|+++|||--...... .
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~ 1025 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPV 1025 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccc
Confidence 347899999999999999995 899999999999999999999999998885 689999999955554443 5
Q ss_pred EEEEEeC
Q 003976 581 TIMVLKN 587 (782)
Q Consensus 581 ~I~vl~~ 587 (782)
+|.|-..
T Consensus 1026 qi~V~k~ 1032 (1047)
T PRK10246 1026 QIKVKKI 1032 (1047)
T ss_pred eEEEEEC
Confidence 5555543
No 463
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.68 E-value=6.5e-05 Score=76.92 Aligned_cols=212 Identities=12% Similarity=0.045 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 52 MFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLR 131 (782)
Q Consensus 52 ~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR 131 (782)
+.+...+.+...++..++|++.|..||.+.++. .. .++.+..+.++.++....+...-.++-.++-.++-
T Consensus 12 l~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~-----~~-----~~~~~~~~~l~~~~igaaRR~~DTRvf~rIy~~la 81 (237)
T PF13748_consen 12 LALTFLLVLAENVLLLLYPLFIGFAINALLNGD-----VW-----QALMYAALVLLMWAIGAARRIYDTRVFSRIYAELA 81 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----HH-----HHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHh
Confidence 344455556667777888889999999986532 11 12233333344444444454444443333333333
Q ss_pred HHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 132 LKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAV 211 (782)
Q Consensus 132 ~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~~ 211 (782)
..++-+ |. -+. .+.+.+..|++ =..++-+++.+.+|.++.+++.++++.++++.++.++++..+..+.++.+
T Consensus 82 ~~vi~~---qr---~~~-~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~~ 153 (237)
T PF13748_consen 82 VPVILS---QR---QQG-LSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFLL 153 (237)
T ss_pred HHHHHH---HH---HhC-CChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 21 123 36778999985 45777789999999999999999999999999999999998888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 212 AGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLF 291 (782)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 291 (782)
+...|.++..+...+.++.. +.-++=++. .....+.++.+...+...+.+-..+...+++.....
T Consensus 154 i~~~f~~~~~~L~~~LNnrl-------E~eV~~i~~--------~~~~~l~rHy~~L~~lrI~lSD~EA~~y~~i~i~~~ 218 (237)
T PF13748_consen 154 ILPRFARRNYRLYRRLNNRL-------EKEVDIIER--------RKPASLRRHYRRLSRLRIRLSDREALGYLLIGIVAA 218 (237)
T ss_pred HHHHHHHHHHHHHHHHhHHH-------HHHccHhhc--------CChHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHH
Confidence 76666665555544444333 332221111 122334444445555555555555555554444433
Q ss_pred HHHHH
Q 003976 292 CAWAL 296 (782)
Q Consensus 292 ~~~~~ 296 (782)
..++.
T Consensus 219 ~l~~~ 223 (237)
T PF13748_consen 219 LLFVF 223 (237)
T ss_pred HHHHH
Confidence 33333
No 464
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.57 E-value=9.2e-08 Score=107.47 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=71.1
Q ss_pred cCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEEC---CeeCCCcCHHHH
Q 003976 374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLD---GHDLKSLQLKWL 450 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~---g~di~~~~~~~l 450 (782)
.+.++.++++..|... ..+++.++ +|.+||+++|+||||||||||++.|.|+.+|+.|.|.+. |.++.++..+.+
T Consensus 137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 3468999999999754 34888886 999999999999999999999999999999999999885 577766554433
Q ss_pred ----HhHceEEeccC
Q 003976 451 ----REQMGLVSQEP 461 (782)
Q Consensus 451 ----R~~i~~V~Q~~ 461 (782)
++.|++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 35799999963
No 465
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.51 E-value=9.2e-07 Score=97.81 Aligned_cols=171 Identities=23% Similarity=0.364 Sum_probs=118.5
Q ss_pred EEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHH-cCCCCCccEEEECCeeCCCcCHHHHHhHceEEecc
Q 003976 382 VCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ-RLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQE 460 (782)
Q Consensus 382 v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~-~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~ 460 (782)
|+|..|++. .+.+ +=||+| .+.|||..=-|||||+++|. |-|+-.-| ||.. . +|. +
T Consensus 227 ve~~LP~~g--~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE-----------~--VVT-~ 283 (448)
T PF09818_consen 227 VEIELPNGG--TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGRE-----------F--VVT-D 283 (448)
T ss_pred EEEECCCCC--EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCce-----------E--EEE-C
Confidence 777777532 4444 568999 99999999999999999996 78875544 4521 1 111 1
Q ss_pred CCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeC
Q 003976 461 PALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 540 (782)
Q Consensus 461 ~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE 540 (782)
+... .| .+.| -+....+++..||.+||.|.||.- -.-.+=||---|=-+|..||=..+++||+||
T Consensus 284 ~~av--ki---------rAED---GR~V~~vDISpFI~~LP~g~dT~~-FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDE 348 (448)
T PF09818_consen 284 PDAV--KI---------RAED---GRSVEGVDISPFINNLPGGKDTTC-FSTENASGSTSQAANIMEALEAGARLLLIDE 348 (448)
T ss_pred CCce--EE---------EecC---CceEeCccchHHHhhCCCCCCCCc-ccccCCCchHHHHHHHHHHHHcCCCEEEEcC
Confidence 1000 00 0101 122344578899999999999983 3334679999999999999999999999999
Q ss_pred CCCCC-----CHHHHHHH----------HHHHHHHh--CCCeEEEEecCc-chhhhcCEEEEEeCCEE
Q 003976 541 ATSAL-----DAESELIV----------QRALEKIM--SNRTTIVVAHRL-STVRDVDTIMVLKNGQV 590 (782)
Q Consensus 541 ~tsal-----D~~~e~~i----------~~~l~~~~--~~~T~i~iaHrl-~~i~~aD~I~vl~~G~i 590 (782)
=|||- |..-++.| .+.++.+. .|-++|+|+=-. .++..||+|++||+=+.
T Consensus 349 DtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 349 DTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred cccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 99997 66666666 22233332 466666666554 46788999999998553
No 466
>PRK01889 GTPase RsgA; Reviewed
Probab=98.49 E-value=9.3e-08 Score=106.02 Aligned_cols=134 Identities=19% Similarity=0.221 Sum_probs=90.0
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 472 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi 472 (782)
-++.+.-.+++|++++++|+||+|||||++.|.|...|..|+|.+++...++. ..++++.+++|++.+|+.+-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t---t~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT---TTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch---hhhccEEEecCCCeecCCCchhhh
Confidence 45666667889999999999999999999999999999999999987654332 345689999999999998888888
Q ss_pred hcCCCCC----CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 473 LLGKEDA----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 473 ~~g~~~~----~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
.+..+.. ...++.+.++.|..++....-..|-...-.-.-..|| ++|..--+.|+++
T Consensus 261 ~l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~---~~r~~~Y~~l~~e 321 (356)
T PRK01889 261 QLWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELD---ERRLQSYRKLQRE 321 (356)
T ss_pred cccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 7764321 1234555555554433222111121111000112344 6777777777665
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.48 E-value=1.7e-06 Score=106.32 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=48.6
Q ss_pred HHHHhccCCceEEEeCCCCCC-CHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh
Q 003976 525 IARAVLRNPKILLLDEATSAL-DAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD 578 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsal-D~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~ 578 (782)
|+|++..+|+++++|||+++| |+...+.+.+.++..+ .|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 789999999999999999999 7889999999998775 47899999999998865
No 468
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=1.3e-06 Score=101.44 Aligned_cols=111 Identities=17% Similarity=0.275 Sum_probs=89.6
Q ss_pred cHHHHHHHcccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 668 SIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYF 747 (782)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 747 (782)
..++++.+.+|+|+++..|.++.++.....-..-.+.+++++.+... .+ ........+....++-++..++++++.++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~-~~-~~~~~~~~~~~l~~l~~~~a~~~~~r~~~ 211 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEG-DD-SADALKRACTILLGLFLIGALANAIRGGL 211 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhc-cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999988877777666555556677888766551 11 12333345667778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccCC
Q 003976 748 YTLMGEHLTARVRLSMFSGSFIFSFQFYILNAF 780 (782)
Q Consensus 748 ~~~~~~~~~~~lr~~~f~~il~~~~~fFd~nrf 780 (782)
|.+++++...++|..+|++++||+++|||.|+-
T Consensus 212 ~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nkt 244 (716)
T KOG0058|consen 212 LQYAGERVVARLRTDLFRSLLRQDIAFFDENKT 244 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCc
Confidence 999999999999999999999999999999874
No 469
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.46 E-value=1.2e-07 Score=106.60 Aligned_cols=80 Identities=18% Similarity=0.298 Sum_probs=64.0
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCc---cEEEECCeeCCCcCHHHH------HhHceEEeccCCC
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS---GKILLDGHDLKSLQLKWL------REQMGLVSQEPAL 463 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~---G~I~i~g~di~~~~~~~l------R~~i~~V~Q~~~l 463 (782)
+++++ |++.+||+++|+|+||||||||+++|+|+++|+. |.|-.+|.+++++..+.+ |..+++++|+...
T Consensus 145 aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~ 223 (434)
T PRK07196 145 AINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESP 223 (434)
T ss_pred eccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCCh
Confidence 89999 9999999999999999999999999999999986 444556666666554544 4468899999866
Q ss_pred ccc-cHHHHHh
Q 003976 464 FAT-SIANNIL 473 (782)
Q Consensus 464 f~~-Ti~eNi~ 473 (782)
+.. ++.+|..
T Consensus 224 ~~rl~a~e~a~ 234 (434)
T PRK07196 224 LMRIKATELCH 234 (434)
T ss_pred hhhHHHHHHHH
Confidence 643 6666654
No 470
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.45 E-value=4.6e-07 Score=95.09 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=36.3
Q ss_pred HhccCCceEEEeCCCCC------CCHHHHHHHHHHHHHHh--CCCeEEEEecCcc
Q 003976 528 AVLRNPKILLLDEATSA------LDAESELIVQRALEKIM--SNRTTIVVAHRLS 574 (782)
Q Consensus 528 Al~~~p~illLDE~tsa------lD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~ 574 (782)
+...+|+++|+| |+++ .|+.....+.+.|.++. .|.|+|+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 345799999999 7764 68888888888887764 3789999999753
No 471
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.44 E-value=6.4e-08 Score=111.79 Aligned_cols=156 Identities=13% Similarity=0.178 Sum_probs=93.5
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHH--HcCCCCCccEEEECCeeCCCcCHHHHHh---HceEEeccCCCccccHHHHHhc
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQLKWLRE---QMGLVSQEPALFATSIANNILL 474 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll--~~~~~~~~G~I~i~g~di~~~~~~~lR~---~i~~V~Q~~~lf~~Ti~eNi~~ 474 (782)
=+++|..+.|.|++||||||+..-. .|.-++.+..+++... -+.+++++ ++|+-.|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 3789999999999999999999866 3455555667777653 24444443 34544443210 001111
Q ss_pred CCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH--HHhccCCceEEEeCCCCCCCHHHHHH
Q 003976 475 GKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA--RAVLRNPKILLLDEATSALDAESELI 552 (782)
Q Consensus 475 g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA--RAl~~~p~illLDE~tsalD~~~e~~ 552 (782)
-.. ..........+..++.+++.. ....+|+||+||+.|+ .++..+|+.+ ....+.
T Consensus 88 ~~~-~~~~~~~~~~~~~~l~~~l~~-----------i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~ 145 (484)
T TIGR02655 88 LDA-SPDPEGQDVVGGFDLSALIER-----------INYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRRE 145 (484)
T ss_pred Eec-CchhccccccccCCHHHHHHH-----------HHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHH
Confidence 000 000011111222233333322 2357899999999999 6776665544 356667
Q ss_pred HHHHHHHHh-CCCeEEEEecCcch--------h-h-hcCEEEEEe
Q 003976 553 VQRALEKIM-SNRTTIVVAHRLST--------V-R-DVDTIMVLK 586 (782)
Q Consensus 553 i~~~l~~~~-~~~T~i~iaHrl~~--------i-~-~aD~I~vl~ 586 (782)
+.+.++.+. .|+|+|+++|..+. + + -||.|+.|+
T Consensus 146 l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 146 IFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 777776654 58999999998753 1 2 269999887
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.44 E-value=5.1e-07 Score=99.84 Aligned_cols=123 Identities=20% Similarity=0.307 Sum_probs=82.3
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-CccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYEP-TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDA 479 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~ 479 (782)
.+++..+.|+||+||||||+++.+.+.+++ .+|.|..-..++.-. .++.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~------------------------------~~~~ 168 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV------------------------------HRNK 168 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh------------------------------ccCc
Confidence 457899999999999999999999998764 466666544322110 0000
Q ss_pred CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 003976 480 SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 559 (782)
Q Consensus 480 ~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~ 559 (782)
...+. +..+|..+.. --=++++||-.+||++++||+. |+++.....+ .
T Consensus 169 --------------~~~i~------q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---a 216 (343)
T TIGR01420 169 --------------RSLIN------QREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALT---A 216 (343)
T ss_pred --------------cceEE------ccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---H
Confidence 00000 1112221111 1235788999999999999997 8887654443 3
Q ss_pred HhCCCeEEEEecCcchhhhcCEEEEE
Q 003976 560 IMSNRTTIVVAHRLSTVRDVDTIMVL 585 (782)
Q Consensus 560 ~~~~~T~i~iaHrl~~i~~aD~I~vl 585 (782)
...|.+++.+.|..+.....||++-|
T Consensus 217 a~tGh~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 217 AETGHLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred HHcCCcEEEEEcCCCHHHHHHHHHHh
Confidence 45699999999999998888888655
No 473
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=2.6e-07 Score=102.77 Aligned_cols=63 Identities=27% Similarity=0.371 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHhcc---------CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh
Q 003976 513 TQLSGGQKQRIAIARAVLR---------NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR 577 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~~---------~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~ 577 (782)
..+|.||+++++||.++.. +|||||||||+|.||+...+.+.+.|.+. |.+++++||.+..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 3589999999999999999 99999999999999999999999998753 679999999987654
No 474
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.43 E-value=2.7e-07 Score=93.10 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=59.7
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCC--Ccc-ccHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPA--LFA-TSIA 469 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~--lf~-~Ti~ 469 (782)
..+=+.+.+++|+.++|+||+||||||+++.|+++++|+.|.|.+.+.+-..++ .+..++++.|.+. .+. -|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 555677889999999999999999999999999999999999999775433321 2345777766553 232 3677
Q ss_pred HHHhc
Q 003976 470 NNILL 474 (782)
Q Consensus 470 eNi~~ 474 (782)
+++..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 77654
No 475
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.40 E-value=3.5e-07 Score=104.12 Aligned_cols=142 Identities=15% Similarity=0.209 Sum_probs=84.2
Q ss_pred cceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcC
Q 003976 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG 475 (782)
Q Consensus 396 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g 475 (782)
+.++.+++|+++++|||+|+||||++..|.+.+.+..|.. +|++|.+|+ |.-+..||+.+.
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~~ 308 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRIY 308 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHHH
Confidence 3444456789999999999999999999999887776642 588999998 667778888753
Q ss_pred C-----CC-CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC-----ceEEEeCCCCC
Q 003976 476 K-----ED-ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP-----KILLLDEATSA 544 (782)
Q Consensus 476 ~-----~~-~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p-----~illLDE~tsa 544 (782)
. +. ...+...... .+..+.+.....|..-|.+-. ...+.-+.+++.++ .+|+||..+..
T Consensus 309 AeilGVpv~~~~~~~Dl~~-------aL~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 309 GKILGVPVHAVKDAADLRL-------ALSELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred HHHhCCCeeccCCchhHHH-------HHHhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 1 11 0111111111 223444444455555432211 11223333344443 68999988876
Q ss_pred CCHHHHHHHHHHHHHHh-CCCeEEEEecC
Q 003976 545 LDAESELIVQRALEKIM-SNRTTIVVAHR 572 (782)
Q Consensus 545 lD~~~e~~i~~~l~~~~-~~~T~i~iaHr 572 (782)
..+.+.++... .+.+-+++|+=
T Consensus 379 ------~~l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 379 ------DTLNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred ------HHHHHHHHHhccCCCCEEEEeCC
Confidence 23333343332 35677777773
No 476
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.36 E-value=1.6e-06 Score=87.41 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=48.9
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEP 461 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~ 461 (782)
|+.++|+||||||||||+++|.+.+.| .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 5888898888777777888899999984
No 477
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.33 E-value=1.2e-06 Score=89.30 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=69.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHH
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVI 485 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~ 485 (782)
.++|+||+||||||+++.+.+.+.+..| +.+-..|........+....++++|++.+. +..| |.+..+ .+..
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~---g~~~~~-~~~~ 74 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG---VETG---GCPHTA-IRED 74 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcC---CCccce-eccC
Confidence 6899999999999999999999988655 555556666655566666779999987652 0011 112111 1111
Q ss_pred HHHHHhhhHhHHhcCCCCccccccCCCCCCCHHH
Q 003976 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 519 (782)
Q Consensus 486 ~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQ 519 (782)
.+...+.+.+++.++|++..+.|+..|..+|.--
T Consensus 75 ~~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 75 ASMNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 2223444566777788778888888886665444
No 478
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.31 E-value=8.1e-06 Score=80.36 Aligned_cols=85 Identities=18% Similarity=0.209 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEE
Q 003976 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQV 590 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~i 590 (782)
...|-|+-=-=-+.|.+- +.-|+|||||-|+|-+.-+-.+...|+++. .|--+|+.||..=.+.- --.|+-++.|-+
T Consensus 128 h~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 128 HHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred hhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 456888866555566654 457999999999999999989998898875 47889999998754322 247888887764
Q ss_pred EEecChhHH
Q 003976 591 VESGTHVDL 599 (782)
Q Consensus 591 ve~G~~~eL 599 (782)
++-+++|.
T Consensus 207 -~~~~fe~t 214 (233)
T COG3910 207 -EERDFEET 214 (233)
T ss_pred -cccchHHH
Confidence 44555554
No 479
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.30 E-value=8.8e-07 Score=98.09 Aligned_cols=88 Identities=24% Similarity=0.261 Sum_probs=66.3
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCC--Cc-cEEEECCeeCCCcCHHHHHhHceEEeccCC-----CccccHHHHHh
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEP--TS-GKILLDGHDLKSLQLKWLREQMGLVSQEPA-----LFATSIANNIL 473 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~--~~-G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~-----lf~~Ti~eNi~ 473 (782)
++|..++|+||+||||||++++|++++.+ .. +.|.....|+ ++..+.+++..++|.|... -|..+++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999853 33 4666655555 5888888777889988743 58889999888
Q ss_pred cCCCCC-------CHHHHHHHHHHh
Q 003976 474 LGKEDA-------SMDRVIEAAKAA 491 (782)
Q Consensus 474 ~g~~~~-------~~~~i~~a~~~a 491 (782)
.. |+. +.+.+..|++.+
T Consensus 211 ~~-Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 RK-PHAILVGEARDAETISAALEAA 234 (358)
T ss_pred cC-CCEEeeeeeCCHHHHHHHHHHH
Confidence 74 442 344455666664
No 480
>PRK08149 ATP synthase SpaL; Validated
Probab=98.23 E-value=1.1e-06 Score=98.69 Aligned_cols=68 Identities=19% Similarity=0.325 Sum_probs=60.0
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCc---cEEEECCeeCCCcCHHHHH----hHceEEecc
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS---GKILLDGHDLKSLQLKWLR----EQMGLVSQE 460 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~---G~I~i~g~di~~~~~~~lR----~~i~~V~Q~ 460 (782)
.+++++ +++.+||+++|+|+||||||||++.|.|..+++. |.|-.+|.+++++..+.++ +++++|...
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 389999 9999999999999999999999999999999988 9999999999888766665 566666554
No 481
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.23 E-value=1.4e-06 Score=87.01 Aligned_cols=66 Identities=29% Similarity=0.405 Sum_probs=46.7
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHh-HceEEeccCCC-ccccHHHHHhc
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE-QMGLVSQEPAL-FATSIANNILL 474 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~-~i~~V~Q~~~l-f~~Ti~eNi~~ 474 (782)
+|+.++|+|+|||||||+++.|.+++.| +.++|.++.. ...+|+ ..++.+|+... ...++.+|+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999987 5899988743 233333 35666666432 22344444443
No 482
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.23 E-value=2.1e-06 Score=89.31 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=39.6
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHH-cCCCCCccEEEECCeeCCCcCHHHH---HhHceEEecc
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQ-RLYEPTSGKILLDGHDLKSLQLKWL---REQMGLVSQE 460 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~-~~~~~~~G~I~i~g~di~~~~~~~l---R~~i~~V~Q~ 460 (782)
=+++|+.+.|.||+||||||++..++ ....+.++.+.+... .+.+.+ .+++++..|+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e----~~~~~i~~~~~~~g~~~~~ 76 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE----ESRESIIRQAAQFGMDFEK 76 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc----CCHHHHHHHHHHhCCCHHH
Confidence 48899999999999999999988654 344556667777762 233333 3456666554
No 483
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.17 E-value=1.2e-05 Score=91.19 Aligned_cols=181 Identities=20% Similarity=0.257 Sum_probs=111.8
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 471 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eN 471 (782)
.+++++ +++.+||+++|+|+||+|||||++.|.|..+|+.|.+...|..-+++. .+.+. +..+.-.++
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~---------~~~~~~l~~ 219 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH---------DLGEEGLKR 219 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH---------Hhcccccce
Confidence 389999 999999999999999999999999999999999988877666544432 11110 011000111
Q ss_pred H-hc-CC-CCCCHHHHHHHHHHhhhHhHHhcCCCCcccccc-CCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCH
Q 003976 472 I-LL-GK-EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG-EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547 (782)
Q Consensus 472 i-~~-g~-~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vg-e~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~ 547 (782)
. .+ .. .+...+++..+.-.....++... +|+|-.+= +.-.++ -|-|| -|+- .+.+|| .+.+.|+
T Consensus 220 tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~--A~A~R-Eisl-~~ge~P------~~~Gypp 287 (440)
T TIGR01026 220 SVVVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRF--AMAQR-EIGL-AAGEPP------ATKGYTP 287 (440)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHH--HHHHH-HHHH-hcCCCC------cccccCh
Confidence 1 11 11 11223444444333444455543 47776552 222121 12222 1111 122333 4668999
Q ss_pred HHHHHHHHHHHHHhC-CC-------eEEEEecCcchhhhcCEEEEEeCCEEEEecChh
Q 003976 548 ESELIVQRALEKIMS-NR-------TTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHV 597 (782)
Q Consensus 548 ~~e~~i~~~l~~~~~-~~-------T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~ 597 (782)
..-..+.+.+.+... ++ |+++-+|+++ =.-+|++.-+.+|+|+-.+.-.
T Consensus 288 ~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la 344 (440)
T TIGR01026 288 SVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALA 344 (440)
T ss_pred hHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchh
Confidence 988888888877643 46 7788899883 3357999999999999876633
No 484
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.17 E-value=2.7e-06 Score=109.06 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHH----HHHH--------hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 003976 511 GGTQLSGGQKQRIA----IARA--------VLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573 (782)
Q Consensus 511 ~G~~LSgGQkQRia----iARA--------l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl 573 (782)
+...||||||||++ +|+| +..+|++++|||||++||+.+...+.+.+.++ +.++|+++|++
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 45789999999996 6766 55799999999999999999999999999887 78999999987
No 485
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.16 E-value=2.2e-05 Score=96.45 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=47.8
Q ss_pred HhccCCceEEEeCCCCCCC-HHHHHHHHHHHHHHh-CCCeEEEEecCcchh----------hhcCEEEEEeC
Q 003976 528 AVLRNPKILLLDEATSALD-AESELIVQRALEKIM-SNRTTIVVAHRLSTV----------RDVDTIMVLKN 587 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD-~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i----------~~aD~I~vl~~ 587 (782)
.+-.+|.++++|||...|| +...+.+.+.++..+ .|..++++||.++.+ ++|+.-+.|-|
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 4567899999999999999 778889999988775 478899999998764 45665555544
No 486
>PLN02796 D-glycerate 3-kinase
Probab=98.14 E-value=1.2e-06 Score=95.30 Aligned_cols=61 Identities=21% Similarity=0.349 Sum_probs=53.5
Q ss_pred cccccceEEe---eCCCE-----EEEeCCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCcCHHHHHh
Q 003976 392 MVFENLNFSV---DAGKT-----FAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSLQLKWLRE 452 (782)
Q Consensus 392 ~vL~~isl~i---~~G~~-----vaivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~di~~~~~~~lR~ 452 (782)
.+++++++++ ++|+. +||+|++|||||||++.|.+++.+. .|.|.+||..+...+...+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 3899999998 67887 9999999999999999999999875 688999999988777777765
No 487
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.13 E-value=2.1e-06 Score=87.35 Aligned_cols=107 Identities=19% Similarity=0.267 Sum_probs=60.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHH-----HHhcCCCCC-
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN-----NILLGKEDA- 479 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~e-----Ni~~g~~~~- 479 (782)
.++|+|||||||||+++.|.+.+ ..|.+.+ +++|.+...-+.++ +..++.|..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v-------------------~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVI-------------------ISQDSYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEE-------------------EEecccccccccccHHHhccCCCCCCCcc
Confidence 48999999999999999999988 2334433 33333221111111 122233321
Q ss_pred CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCH
Q 003976 480 SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547 (782)
Q Consensus 480 ~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~ 547 (782)
+.+.+.+.++... .| ..+.-...+.|.|++++-.+ .+.+|+++|+|.|++..++
T Consensus 60 ~~~~~~~~l~~l~---------~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 DFDLLISHLQDLK---------NG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cHHHHHHHHHHHH---------CC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 2233322222211 11 11222234667777766544 5788999999999998876
No 488
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.11 E-value=2.2e-06 Score=85.56 Aligned_cols=77 Identities=27% Similarity=0.355 Sum_probs=55.0
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCC------------CCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHH
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYE------------PTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 471 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~------------~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eN 471 (782)
|++++|+|||||||||++++|.+.++ |..|+ ++|.+..-++.+.+.+.+ +++.++...++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999874 33444 466666666666666654 46777777777777
Q ss_pred HhcCCCCCCHHHHHHHHH
Q 003976 472 ILLGKEDASMDRVIEAAK 489 (782)
Q Consensus 472 i~~g~~~~~~~~i~~a~~ 489 (782)
.||. ..+.+.++++
T Consensus 76 -~y~~---~~~~i~~~~~ 89 (180)
T TIGR03263 76 -YYGT---PKSPVEEALA 89 (180)
T ss_pred -eeCC---cHHHHHHHHH
Confidence 3663 3455555543
No 489
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.11 E-value=8.5e-06 Score=103.84 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=37.9
Q ss_pred cceEEeeCCCEEEEeCCCCCcHHHHHHHH-HcCCCCCccEEEECCe
Q 003976 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMV-QRLYEPTSGKILLDGH 440 (782)
Q Consensus 396 ~isl~i~~G~~vaivG~sGsGKSTl~~ll-~~~~~~~~G~I~i~g~ 440 (782)
=+++..+.+++++|+|++|+|||||++.+ .++-+..+|.+.+++.
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 35677888999999999999999999999 4555666899999873
No 490
>PRK15494 era GTPase Era; Provisional
Probab=98.11 E-value=2.3e-06 Score=94.47 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=51.0
Q ss_pred CCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCC-------EEEEeCCCCCcHHHHHHHHHcC
Q 003976 370 LPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGK-------TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 370 ~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~-------~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.+...|++++++|+|+|| ...++++++++++++|+ .++|||++|+|||||++.|.+-
T Consensus 12 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 12 REEFKGDTEALAAAVRED-ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred chhhCCccccccccccCC-CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 355689999999999999 44459999999999999 9999999999999999999764
No 491
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.07 E-value=2.4e-06 Score=87.59 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=27.2
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
|+|+.++|+||||||||||++.|.+.+++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999999874
No 492
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.06 E-value=1.4e-06 Score=83.44 Aligned_cols=74 Identities=26% Similarity=0.390 Sum_probs=56.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCC-------------CccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHH
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEP-------------TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 472 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~-------------~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi 472 (782)
.++|+||||||||||+++|.+.+++ ..|+ ++|++..-++...+++. +.|..++..++...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~- 74 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN- 74 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-
Confidence 3789999999999999999999764 4454 58888888888888875 457778888888888
Q ss_pred hcCCCCCCHHHHHHHH
Q 003976 473 LLGKEDASMDRVIEAA 488 (782)
Q Consensus 473 ~~g~~~~~~~~i~~a~ 488 (782)
.||.+ .+.+.++.
T Consensus 75 ~yg~~---~~~i~~~~ 87 (137)
T cd00071 75 YYGTS---KAAVEEAL 87 (137)
T ss_pred EecCc---HHHHHHHH
Confidence 56654 44454443
No 493
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.05 E-value=9.3e-06 Score=101.04 Aligned_cols=78 Identities=26% Similarity=0.347 Sum_probs=67.0
Q ss_pred CCCCCCHHHHHHHHHH------HHhccC--CceEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCcchhhhcCE
Q 003976 511 GGTQLSGGQKQRIAIA------RAVLRN--PKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRDVDT 581 (782)
Q Consensus 511 ~G~~LSgGQkQRiaiA------RAl~~~--p~illLDE~tsalD~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i~~aD~ 581 (782)
.-.+|||||+=.++|| ..+-.+ -+.|+|||||..||+++...+.++|.++.. ++++|||||.-+....+|.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADV 891 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCe
Confidence 3468999999866555 445566 699999999999999999999999998865 6999999999999999999
Q ss_pred EEEEeCC
Q 003976 582 IMVLKNG 588 (782)
Q Consensus 582 I~vl~~G 588 (782)
++.++..
T Consensus 892 ~i~V~k~ 898 (908)
T COG0419 892 RIRVKKD 898 (908)
T ss_pred EEEEEec
Confidence 9998754
No 494
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.04 E-value=8.3e-06 Score=81.43 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=46.0
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEE-----------CCeeCCCcCHHHHHh-----HceEEeccCCCcc
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL-----------DGHDLKSLQLKWLRE-----QMGLVSQEPALFA 465 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i-----------~g~di~~~~~~~lR~-----~i~~V~Q~~~lf~ 465 (782)
|+.++|+|||||||||+++.|.+.+.+. |.+.+ +|.+...++.+.+.. .++.+.|.+.++.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSY 77 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence 6789999999999999999999987654 55544 777777777666543 3777777764444
No 495
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.04 E-value=1.2e-05 Score=75.72 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=39.5
Q ss_pred HHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh------CCCeEEEEecCcc
Q 003976 520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM------SNRTTIVVAHRLS 574 (782)
Q Consensus 520 kQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~------~~~T~i~iaHrl~ 574 (782)
++.....++...++.++++||+-.. ++.....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5667777888899999999998765 5556667777777653 4567777777554
No 496
>PRK09183 transposase/IS protein; Provisional
Probab=97.99 E-value=2.7e-05 Score=82.80 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=38.3
Q ss_pred EEeEEEEcCCCCCc----ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 379 FSEVCFAYPSRPHM----VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 379 ~~~v~f~y~~~~~~----vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
+++..|++....+. .|.+++| +++|+.+.|+||+|+|||+|+.+|.....
T Consensus 74 l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 74 FEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred HhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45555666433221 5778888 99999999999999999999999966543
No 497
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.98 E-value=1e-05 Score=81.48 Aligned_cols=52 Identities=15% Similarity=0.230 Sum_probs=39.6
Q ss_pred cccCCCCCCCHHHHHHHH--HHHHhcc-CCceEEEeCCCCCCCHHHHHHHHHHHHHHhC
Q 003976 507 QVGEGGTQLSGGQKQRIA--IARAVLR-NPKILLLDEATSALDAESELIVQRALEKIMS 562 (782)
Q Consensus 507 ~vge~G~~LSgGQkQRia--iARAl~~-~p~illLDE~tsalD~~~e~~i~~~l~~~~~ 562 (782)
.++.+.-.+|+||+|++. +++.+-. +++++ ||||+|.++-+.+.+.|.++.+
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence 445666678999999977 6666644 34444 9999999998889888887654
No 498
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.97 E-value=3.7e-05 Score=80.17 Aligned_cols=78 Identities=17% Similarity=0.294 Sum_probs=50.9
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcC-CCC------CccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHh
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRL-YEP------TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNIL 473 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~-~~~------~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~ 473 (782)
+++|+++.|+||+||||||++..+... ..| .++.+++++.+ ..+.+.+++.. |.......++.+|+.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i~ 89 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNIY 89 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCEE
Confidence 789999999999999999999988633 334 37889999875 34445444332 111112345777877
Q ss_pred cCCCCCCHHHHH
Q 003976 474 LGKEDASMDRVI 485 (782)
Q Consensus 474 ~g~~~~~~~~i~ 485 (782)
+..+ .+.+++.
T Consensus 90 ~~~~-~~~~~l~ 100 (235)
T cd01123 90 VARA-YNSDHQL 100 (235)
T ss_pred EEec-CCHHHHH
Confidence 7654 3444433
No 499
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.96 E-value=7e-06 Score=92.66 Aligned_cols=81 Identities=21% Similarity=0.342 Sum_probs=62.6
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-CccEEEE---CCeeCCCcCHHHHH---hHceEE-----ecc
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-TSGKILL---DGHDLKSLQLKWLR---EQMGLV-----SQE 460 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-~~G~I~i---~g~di~~~~~~~lR---~~i~~V-----~Q~ 460 (782)
+++++ |++.+||+++|+|+||||||||++.|+|..++ +.|.|.+ .|.++.++..+.++ .+.++| +|+
T Consensus 154 aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~ 232 (442)
T PRK06315 154 CIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQS 232 (442)
T ss_pred EEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCC
Confidence 78887 99999999999999999999999999999844 4467776 55777777666665 235666 887
Q ss_pred CC------CccccHHHHHhc
Q 003976 461 PA------LFATSIANNILL 474 (782)
Q Consensus 461 ~~------lf~~Ti~eNi~~ 474 (782)
|. ....+|.|.++.
T Consensus 233 p~~rlnp~~va~~IAE~~r~ 252 (442)
T PRK06315 233 SQLRLNAAYVGTAIAEYFRD 252 (442)
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 62 233478888764
No 500
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.95 E-value=1.9e-05 Score=76.41 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=37.6
Q ss_pred ccccCCCCCCCHHHHHHHHHHHH-----hccCCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 003976 506 TQVGEGGTQLSGGQKQRIAIARA-----VLRNPKILLLDEATSALDAESELIVQRALEKI 560 (782)
Q Consensus 506 t~vge~G~~LSgGQkQRiaiARA-----l~~~p~illLDE~tsalD~~~e~~i~~~l~~~ 560 (782)
..+..+.-.++++++++.....+ ....|+++ |+|++|..+-..+.+.|.+.
T Consensus 114 i~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 114 LVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 34566666779999887765554 24556766 99999999988888888653
Done!