Query 003976
Match_columns 782
No_of_seqs 528 out of 3750
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 3E-122 1E-126 1164.5 95.8 746 29-777 54-847 (1321)
2 3g5u_A MCG1178, multidrug resi 100.0 3E-108 1E-112 1034.8 73.9 745 31-777 29-802 (1284)
3 4f4c_A Multidrug resistance pr 100.0 6E-102 2E-106 979.8 55.6 577 34-616 737-1319(1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 2.8E-96 1E-100 860.6 73.9 569 37-614 11-579 (587)
5 4a82_A Cystic fibrosis transme 100.0 4E-96 1E-100 858.7 69.1 573 37-613 2-576 (578)
6 3qf4_B Uncharacterized ABC tra 100.0 1E-95 3E-100 858.1 68.0 572 33-615 21-592 (598)
7 3b5x_A Lipid A export ATP-bind 100.0 2.3E-93 7.9E-98 836.3 76.8 569 35-614 11-580 (582)
8 3b60_A Lipid A export ATP-bind 100.0 4.6E-93 1.6E-97 833.8 74.4 569 35-614 11-580 (582)
9 2yl4_A ATP-binding cassette SU 100.0 6.7E-93 2.3E-97 834.5 75.3 573 36-614 6-584 (595)
10 3g5u_A MCG1178, multidrug resi 100.0 3.2E-89 1.1E-93 861.6 59.4 580 34-616 690-1273(1284)
11 3nh6_A ATP-binding cassette SU 100.0 3.7E-69 1.3E-73 579.6 29.0 279 334-615 13-291 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.9E-57 6.6E-62 476.0 32.0 239 375-613 6-245 (247)
13 2ghi_A Transport protein; mult 100.0 3.1E-56 1.1E-60 470.3 30.0 239 375-614 16-255 (260)
14 2ixe_A Antigen peptide transpo 100.0 1.4E-55 4.9E-60 467.9 30.1 240 374-613 14-257 (271)
15 1mv5_A LMRA, multidrug resista 100.0 1.7E-56 5.9E-61 468.0 20.3 236 377-613 2-238 (243)
16 3gd7_A Fusion complex of cysti 100.0 2.7E-53 9.3E-58 470.1 26.0 228 374-603 17-244 (390)
17 2cbz_A Multidrug resistance-as 100.0 1E-52 3.6E-57 437.6 24.4 226 376-615 3-231 (237)
18 2pze_A Cystic fibrosis transme 100.0 2.4E-52 8E-57 432.8 25.4 222 375-610 5-227 (229)
19 3gfo_A Cobalt import ATP-bindi 100.0 9.3E-50 3.2E-54 423.4 23.6 220 376-607 7-239 (275)
20 1ji0_A ABC transporter; ATP bi 100.0 2.1E-49 7.1E-54 413.6 24.5 219 376-602 6-229 (240)
21 3tui_C Methionine import ATP-b 100.0 2.1E-49 7.3E-54 433.4 25.6 217 375-602 23-254 (366)
22 3tif_A Uncharacterized ABC tra 100.0 1.6E-49 5.6E-54 413.0 22.4 214 377-600 2-233 (235)
23 2olj_A Amino acid ABC transpor 100.0 1.3E-48 4.4E-53 412.2 22.8 215 376-603 24-250 (263)
24 2bbs_A Cystic fibrosis transme 100.0 1E-48 3.4E-53 418.6 21.8 238 348-609 17-255 (290)
25 4g1u_C Hemin import ATP-bindin 100.0 2.7E-48 9.2E-53 410.8 23.9 214 376-602 11-238 (266)
26 1g6h_A High-affinity branched- 100.0 5.8E-48 2E-52 406.7 24.9 215 376-599 7-240 (257)
27 2yz2_A Putative ABC transporte 100.0 7.7E-48 2.6E-52 407.7 25.2 213 377-603 3-229 (266)
28 3fvq_A Fe(3+) IONS import ATP- 100.0 4E-48 1.4E-52 423.1 23.3 215 376-603 4-230 (359)
29 2pcj_A ABC transporter, lipopr 100.0 5.4E-48 1.8E-52 398.8 22.4 208 376-596 4-223 (224)
30 1b0u_A Histidine permease; ABC 100.0 4.1E-48 1.4E-52 408.8 21.9 216 376-603 6-244 (262)
31 1vpl_A ABC transporter, ATP-bi 100.0 9.2E-48 3.1E-52 404.3 23.5 214 375-602 14-236 (256)
32 3rlf_A Maltose/maltodextrin im 100.0 4.3E-48 1.5E-52 425.6 21.3 213 376-603 3-225 (381)
33 2ihy_A ABC transporter, ATP-bi 100.0 8.2E-48 2.8E-52 409.7 20.6 214 376-602 21-253 (279)
34 2yyz_A Sugar ABC transporter, 100.0 3.2E-47 1.1E-51 417.1 24.6 213 376-603 3-225 (359)
35 2it1_A 362AA long hypothetical 100.0 2E-47 6.9E-52 419.2 21.7 213 376-603 3-225 (362)
36 1z47_A CYSA, putative ABC-tran 100.0 2.8E-47 9.6E-52 416.7 22.6 215 375-603 13-237 (355)
37 2qi9_C Vitamin B12 import ATP- 100.0 5.6E-47 1.9E-51 396.8 23.8 207 377-601 5-222 (249)
38 2onk_A Molybdate/tungstate ABC 100.0 4.2E-47 1.4E-51 395.8 22.5 209 377-603 2-218 (240)
39 3d31_A Sulfate/molybdate ABC t 100.0 4.6E-47 1.6E-51 414.6 23.1 211 377-603 2-219 (348)
40 1v43_A Sugar-binding transport 100.0 7.3E-47 2.5E-51 416.2 23.4 213 376-603 11-233 (372)
41 1oxx_K GLCV, glucose, ABC tran 100.0 3.2E-47 1.1E-51 417.2 20.1 215 376-603 3-232 (353)
42 2d2e_A SUFC protein; ABC-ATPas 100.0 5.5E-47 1.9E-51 397.7 20.5 209 377-598 4-230 (250)
43 1g29_1 MALK, maltose transport 100.0 8.9E-47 3.1E-51 416.2 20.9 213 376-603 3-231 (372)
44 2zu0_C Probable ATP-dependent 100.0 2E-46 7E-51 396.9 21.9 216 376-600 20-253 (267)
45 2pjz_A Hypothetical protein ST 100.0 8.6E-46 3E-50 390.7 19.8 207 377-602 2-216 (263)
46 2nq2_C Hypothetical ABC transp 100.0 9.7E-46 3.3E-50 388.5 19.6 201 376-602 4-218 (253)
47 1sgw_A Putative ABC transporte 100.0 1.1E-44 3.6E-49 370.9 16.1 196 376-591 10-211 (214)
48 2v9p_A Replication protein E1; 100.0 9.1E-43 3.1E-47 373.5 -16.0 237 308-614 38-276 (305)
49 3bk7_A ABC transporter ATP-bin 100.0 1E-35 3.4E-40 347.7 16.2 199 376-601 357-563 (607)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 8.5E-36 2.9E-40 344.8 15.2 199 376-601 287-493 (538)
51 3ozx_A RNAse L inhibitor; ATP 100.0 1.8E-35 6.3E-40 341.2 16.7 200 376-601 269-477 (538)
52 2iw3_A Elongation factor 3A; a 100.0 2E-35 6.9E-40 356.4 13.1 204 377-595 672-981 (986)
53 3ux8_A Excinuclease ABC, A sub 100.0 1.1E-34 3.8E-39 344.9 14.2 206 392-608 336-647 (670)
54 3ux8_A Excinuclease ABC, A sub 100.0 2.5E-34 8.6E-39 341.9 15.1 204 392-604 32-301 (670)
55 3bk7_A ABC transporter ATP-bin 100.0 1.5E-34 5E-39 337.9 12.0 197 376-588 83-304 (607)
56 2iw3_A Elongation factor 3A; a 100.0 1E-32 3.5E-37 332.8 26.2 198 375-602 434-636 (986)
57 3j16_B RLI1P; ribosome recycli 100.0 9.9E-34 3.4E-38 330.4 16.6 198 380-602 350-560 (608)
58 3pih_A Uvrabc system protein A 100.0 3.2E-33 1.1E-37 337.1 20.0 219 375-610 588-911 (916)
59 1yqt_A RNAse L inhibitor; ATP- 100.0 7.9E-34 2.7E-38 328.3 13.8 196 377-588 21-234 (538)
60 3j16_B RLI1P; ribosome recycli 100.0 6.6E-32 2.3E-36 315.0 14.7 196 381-590 82-299 (608)
61 3ozx_A RNAse L inhibitor; ATP 100.0 7.5E-32 2.6E-36 311.1 13.1 193 380-589 3-214 (538)
62 2vf7_A UVRA2, excinuclease ABC 100.0 2.7E-31 9.3E-36 317.9 17.6 217 375-606 501-832 (842)
63 4aby_A DNA repair protein RECN 100.0 4.5E-31 1.5E-35 296.3 14.7 201 393-594 50-381 (415)
64 2r6f_A Excinuclease ABC subuni 100.0 4.4E-30 1.5E-34 307.6 19.9 215 376-608 629-949 (972)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 4.7E-34 1.6E-38 323.3 -14.3 195 376-601 118-338 (460)
66 2ygr_A Uvrabc system protein A 100.0 1.2E-29 4E-34 305.0 19.0 218 375-610 646-969 (993)
67 1e69_A Chromosome segregation 100.0 3.2E-28 1.1E-32 264.5 17.0 202 396-598 17-310 (322)
68 3b85_A Phosphate starvation-in 99.9 4.6E-29 1.6E-33 254.1 -5.8 157 392-589 14-171 (208)
69 1z6g_A Guanylate kinase; struc 99.9 5.3E-30 1.8E-34 263.1 -15.3 165 393-587 12-193 (218)
70 4gp7_A Metallophosphoesterase; 99.9 7.8E-27 2.7E-31 230.3 3.5 149 396-582 1-168 (171)
71 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 7.5E-25 2.6E-29 241.8 16.1 83 510-592 275-364 (365)
72 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.8E-27 6.1E-32 259.1 -5.9 141 379-590 151-292 (330)
73 1ye8_A Protein THEP1, hypothet 99.9 1.1E-26 3.8E-31 230.9 -1.6 147 406-592 2-159 (178)
74 2dpy_A FLII, flagellum-specifi 99.9 1.3E-26 4.5E-31 261.0 -6.6 195 375-601 130-344 (438)
75 2vf7_A UVRA2, excinuclease ABC 99.9 1.6E-23 5.6E-28 250.8 14.7 101 503-603 367-477 (842)
76 1tq4_A IIGP1, interferon-induc 99.9 1E-25 3.5E-30 251.0 -7.9 166 392-582 37-247 (413)
77 2eyu_A Twitching motility prot 99.9 1.4E-25 4.9E-30 236.2 -11.7 174 392-574 15-241 (261)
78 2f1r_A Molybdopterin-guanine d 99.9 7.6E-25 2.6E-29 216.0 -6.3 111 405-536 3-125 (171)
79 3aez_A Pantothenate kinase; tr 99.9 2E-25 6.8E-30 241.0 -11.7 143 371-547 38-209 (312)
80 2ewv_A Twitching motility prot 99.9 1.7E-25 6E-30 247.4 -14.9 174 393-575 127-353 (372)
81 3b9q_A Chloroplast SRP recepto 99.9 3.7E-23 1.3E-27 222.3 3.4 176 394-591 90-285 (302)
82 2o5v_A DNA replication and rep 99.9 1.3E-21 4.4E-26 214.6 12.9 82 514-600 265-355 (359)
83 3sop_A Neuronal-specific septi 99.9 7E-24 2.4E-28 224.5 -6.0 147 406-577 4-154 (270)
84 2og2_A Putative signal recogni 99.8 1.2E-22 3.9E-27 222.6 0.7 174 395-590 148-341 (359)
85 1lvg_A Guanylate kinase, GMP k 99.8 2.8E-24 9.4E-29 217.2 -11.7 168 401-600 1-182 (198)
86 1znw_A Guanylate kinase, GMP k 99.8 2.2E-23 7.4E-28 211.8 -6.2 166 392-586 10-202 (207)
87 2obl_A ESCN; ATPase, hydrolase 99.8 4.4E-22 1.5E-26 217.8 -1.5 194 376-600 45-254 (347)
88 2i3b_A HCR-ntpase, human cance 99.8 1E-22 3.5E-27 204.1 -6.2 158 404-594 1-169 (189)
89 3pih_A Uvrabc system protein A 99.8 2.1E-20 7.3E-25 225.6 11.7 165 423-603 387-562 (916)
90 2gza_A Type IV secretion syste 99.8 8.6E-25 2.9E-29 241.0 -26.7 226 295-528 49-301 (361)
91 4ad8_A DNA repair protein RECN 99.8 1.1E-19 3.8E-24 209.6 12.2 77 513-589 395-474 (517)
92 1tf7_A KAIC; homohexamer, hexa 99.8 3.4E-21 1.2E-25 222.7 -2.5 166 392-589 26-211 (525)
93 3asz_A Uridine kinase; cytidin 99.8 9.7E-22 3.3E-26 199.5 -6.5 144 401-573 3-161 (211)
94 1lw7_A Transcriptional regulat 99.8 1.6E-21 5.5E-26 215.3 -5.6 148 393-542 157-329 (365)
95 1cr0_A DNA primase/helicase; R 99.8 1E-19 3.6E-24 194.7 8.2 180 393-590 24-237 (296)
96 3qkt_A DNA double-strand break 99.8 1.6E-18 5.4E-23 189.5 16.8 75 512-586 246-327 (339)
97 2r6f_A Excinuclease ABC subuni 99.8 1.8E-19 6.3E-24 216.1 8.1 153 427-602 431-601 (972)
98 2o8b_B DNA mismatch repair pro 99.8 2.9E-19 9.9E-24 219.3 9.5 172 375-598 749-939 (1022)
99 1tf7_A KAIC; homohexamer, hexa 99.8 3.7E-19 1.3E-23 205.7 8.9 152 398-589 275-444 (525)
100 1w1w_A Structural maintenance 99.8 3.1E-18 1.1E-22 193.0 14.5 73 514-586 333-410 (430)
101 1pzn_A RAD51, DNA repair and r 99.7 1.7E-19 5.8E-24 197.8 2.3 166 393-600 119-314 (349)
102 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 4E-18 1.4E-22 163.8 11.3 88 503-590 41-142 (148)
103 2ygr_A Uvrabc system protein A 99.7 7.1E-18 2.4E-22 203.1 15.4 136 462-602 465-618 (993)
104 2jeo_A Uridine-cytidine kinase 99.7 4E-20 1.4E-24 192.7 -4.0 166 391-601 12-187 (245)
105 1ewq_A DNA mismatch repair pro 99.7 5E-19 1.7E-23 211.1 4.0 158 374-593 548-716 (765)
106 4a74_A DNA repair and recombin 99.7 1.2E-18 4.1E-23 178.3 6.1 148 400-589 21-201 (231)
107 3szr_A Interferon-induced GTP- 99.7 1.9E-20 6.4E-25 219.7 -8.5 191 376-601 10-237 (608)
108 1pui_A ENGB, probable GTP-bind 99.7 1.4E-19 4.7E-24 182.7 -1.9 169 377-561 4-197 (210)
109 1rj9_A FTSY, signal recognitio 99.7 2.1E-18 7.3E-23 185.3 6.9 149 403-575 101-260 (304)
110 2ehv_A Hypothetical protein PH 99.7 2E-19 7E-24 186.4 -1.7 181 377-587 7-207 (251)
111 3thx_A DNA mismatch repair pro 99.7 2.2E-17 7.4E-22 200.4 15.2 167 375-600 630-812 (934)
112 1odf_A YGR205W, hypothetical 3 99.7 5.4E-20 1.9E-24 196.5 -8.3 129 403-549 30-169 (290)
113 3jvv_A Twitching mobility prot 99.7 2.3E-18 7.8E-23 188.9 4.3 147 380-588 92-246 (356)
114 2qag_C Septin-7; cell cycle, c 99.7 1.6E-18 5.6E-23 193.6 -2.1 166 375-576 10-180 (418)
115 3kta_B Chromosome segregation 99.7 1.3E-16 4.6E-21 157.2 10.7 79 512-590 62-146 (173)
116 2qnr_A Septin-2, protein NEDD5 99.7 1.6E-18 5.4E-23 186.3 -3.9 163 380-575 2-169 (301)
117 2w0m_A SSO2452; RECA, SSPF, un 99.6 2.4E-16 8.1E-21 161.0 8.4 163 393-589 11-193 (235)
118 1s96_A Guanylate kinase, GMP k 99.6 2.5E-17 8.5E-22 168.8 -0.2 142 399-602 11-161 (219)
119 3thx_B DNA mismatch repair pro 99.6 5.7E-16 1.9E-20 187.5 8.6 168 375-591 639-815 (918)
120 3c8u_A Fructokinase; YP_612366 99.6 4.1E-19 1.4E-23 180.3 -16.5 115 401-542 19-140 (208)
121 1nij_A Hypothetical protein YJ 99.6 1.2E-17 4.3E-22 180.7 -6.3 154 405-574 5-190 (318)
122 1zp6_A Hypothetical protein AT 99.6 4.8E-17 1.6E-21 161.9 -2.7 138 400-559 5-146 (191)
123 2cvh_A DNA repair and recombin 99.6 2.7E-15 9.1E-20 152.3 10.2 150 393-588 8-185 (220)
124 1wb9_A DNA mismatch repair pro 99.6 8.4E-16 2.9E-20 184.4 4.4 165 375-593 576-750 (800)
125 2qag_B Septin-6, protein NEDD5 99.6 2.4E-16 8.3E-21 175.4 -0.3 179 376-571 16-217 (427)
126 1nlf_A Regulatory protein REPA 99.6 4.1E-15 1.4E-19 157.7 8.5 151 400-576 26-184 (279)
127 1n0w_A DNA repair protein RAD5 99.5 1.8E-14 6.1E-19 148.5 10.6 148 400-588 20-209 (243)
128 2qm8_A GTPase/ATPase; G protei 99.5 1.5E-16 5.3E-21 173.4 -8.5 176 379-560 32-258 (337)
129 2yhs_A FTSY, cell division pro 99.5 3E-14 1E-18 160.6 7.5 154 394-571 283-447 (503)
130 2bdt_A BH3686; alpha-beta prot 99.4 1.4E-16 4.7E-21 158.7 -13.3 166 404-600 2-183 (189)
131 3auy_A DNA double-strand break 99.4 3.7E-13 1.3E-17 148.7 10.8 74 513-586 279-359 (371)
132 3e70_C DPA, signal recognition 99.4 2.4E-13 8.2E-18 147.3 8.5 145 400-572 125-278 (328)
133 2rcn_A Probable GTPase ENGC; Y 99.4 8.6E-14 3E-18 151.9 4.2 122 393-530 205-329 (358)
134 2bbw_A Adenylate kinase 4, AK4 99.4 1.4E-14 4.6E-19 150.7 -2.1 167 403-587 26-218 (246)
135 1sxj_E Activator 1 40 kDa subu 99.4 2.3E-13 8E-18 148.5 6.8 138 406-576 38-177 (354)
136 2oap_1 GSPE-2, type II secreti 99.4 1.5E-15 5.2E-20 173.9 -11.5 171 393-578 249-455 (511)
137 1p9r_A General secretion pathw 99.4 1E-15 3.5E-20 171.1 -12.9 129 393-538 158-315 (418)
138 3lda_A DNA repair protein RAD5 99.4 9.8E-13 3.4E-17 146.2 10.4 147 400-589 174-364 (400)
139 1htw_A HI0065; nucleotide-bind 99.3 2.9E-14 1E-18 138.4 -2.9 89 380-476 11-100 (158)
140 2kjq_A DNAA-related protein; s 99.3 2.1E-12 7.3E-17 124.0 6.6 91 393-572 30-124 (149)
141 2x8a_A Nuclear valosin-contain 99.3 1.3E-14 4.3E-19 153.8 -11.0 142 393-557 35-190 (274)
142 3lnc_A Guanylate kinase, GMP k 99.3 9.1E-15 3.1E-19 150.5 -12.4 146 393-561 16-177 (231)
143 3ec2_A DNA replication protein 99.2 6.1E-12 2.1E-16 124.0 5.0 112 398-575 32-145 (180)
144 1cke_A CK, MSSA, protein (cyti 99.2 2.3E-13 8E-18 138.9 -5.4 128 404-543 5-151 (227)
145 2yv5_A YJEQ protein; hydrolase 99.2 8.5E-13 2.9E-17 141.7 -3.1 114 400-527 161-300 (302)
146 1sq5_A Pantothenate kinase; P- 99.1 2E-12 7E-17 139.1 -3.4 140 374-547 35-199 (308)
147 1udx_A The GTP-binding protein 99.1 1.8E-11 6.1E-16 136.6 3.1 155 393-571 146-306 (416)
148 1ls1_A Signal recognition part 99.1 9.2E-11 3.1E-15 125.4 6.9 132 377-560 77-209 (295)
149 1u0l_A Probable GTPase ENGC; p 99.1 1.1E-11 3.7E-16 133.0 -0.6 102 399-501 164-289 (301)
150 4e22_A Cytidylate kinase; P-lo 99.1 1E-11 3.5E-16 129.6 -1.0 100 393-502 19-136 (252)
151 3tr0_A Guanylate kinase, GMP k 99.1 8.6E-11 2.9E-15 117.7 5.7 72 398-473 1-73 (205)
152 3a00_A Guanylate kinase, GMP k 99.0 2.9E-11 9.8E-16 120.1 0.9 128 404-540 1-169 (186)
153 1vma_A Cell division protein F 99.0 3.7E-10 1.3E-14 121.1 8.3 111 397-559 97-210 (306)
154 2px0_A Flagellar biosynthesis 99.0 3.2E-10 1.1E-14 121.2 6.1 138 402-592 103-246 (296)
155 1iy2_A ATP-dependent metallopr 99.0 1.5E-12 5.2E-17 137.7 -12.1 136 378-541 51-194 (278)
156 1ixz_A ATP-dependent metallopr 98.9 1.9E-12 6.6E-17 134.8 -12.3 138 377-542 26-171 (254)
157 3ney_A 55 kDa erythrocyte memb 98.9 1.3E-10 4.5E-15 116.5 1.3 83 398-489 13-108 (197)
158 3euj_A Chromosome partition pr 98.9 5.2E-10 1.8E-14 126.5 4.5 79 378-461 8-94 (483)
159 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 6.4E-12 2.2E-16 139.0 -11.2 170 400-597 16-209 (392)
160 2dr3_A UPF0273 protein PH0284; 98.9 1.9E-09 6.5E-14 110.7 6.4 166 393-587 11-196 (247)
161 1in4_A RUVB, holliday junction 98.9 9.8E-12 3.3E-16 135.2 -11.5 157 380-561 22-193 (334)
162 2ius_A DNA translocase FTSK; n 98.8 1.7E-10 5.6E-15 131.5 -3.2 158 396-574 159-343 (512)
163 1t9h_A YLOQ, probable GTPase E 98.8 4.1E-10 1.4E-14 120.6 -0.0 73 399-473 168-248 (307)
164 2zr9_A Protein RECA, recombina 98.8 1.5E-08 5.1E-13 110.7 12.1 143 400-595 57-237 (349)
165 1oix_A RAS-related protein RAB 98.8 5.3E-10 1.8E-14 111.1 0.4 142 406-559 31-188 (191)
166 1kgd_A CASK, peripheral plasma 98.7 1.2E-09 4.2E-14 107.7 0.6 79 403-488 4-93 (180)
167 3k1j_A LON protease, ATP-depen 98.7 2.4E-10 8.2E-15 134.1 -5.4 156 392-559 48-227 (604)
168 2dy1_A Elongation factor G; tr 98.7 2.6E-09 9E-14 126.4 3.0 132 398-575 3-138 (665)
169 2r6a_A DNAB helicase, replicat 98.7 2.5E-08 8.7E-13 112.8 10.9 172 393-590 192-401 (454)
170 1qhl_A Protein (cell division 98.7 2.5E-10 8.7E-15 117.1 -5.2 75 376-460 9-91 (227)
171 1svm_A Large T antigen; AAA+ f 98.7 3.2E-10 1.1E-14 124.9 -7.2 133 393-543 158-312 (377)
172 2qt1_A Nicotinamide riboside k 98.6 3.5E-09 1.2E-13 106.5 0.0 107 396-542 13-119 (207)
173 3tau_A Guanylate kinase, GMP k 98.6 5.2E-09 1.8E-13 105.7 0.2 72 402-477 6-88 (208)
174 2f9l_A RAB11B, member RAS onco 98.5 2E-08 6.7E-13 100.1 2.2 138 406-560 7-165 (199)
175 2j41_A Guanylate kinase; GMP, 98.5 2.1E-08 7.1E-13 100.2 0.9 60 399-462 1-61 (207)
176 4eun_A Thermoresistant glucoki 98.5 3.6E-08 1.2E-12 98.7 2.5 62 398-464 23-84 (200)
177 2ce7_A Cell division protein F 98.5 2.6E-07 8.7E-12 104.8 9.1 113 393-576 40-167 (476)
178 3cr8_A Sulfate adenylyltranfer 98.5 8.9E-09 3E-13 118.8 -3.1 72 399-475 364-447 (552)
179 3t34_A Dynamin-related protein 98.5 6.9E-08 2.4E-12 105.8 4.1 46 392-440 25-72 (360)
180 2qtf_A Protein HFLX, GTP-bindi 98.4 1.5E-07 5E-12 103.4 6.5 142 406-560 181-351 (364)
181 3nwj_A ATSK2; P loop, shikimat 98.4 2.7E-08 9.1E-13 103.6 -0.5 53 376-429 17-73 (250)
182 3uie_A Adenylyl-sulfate kinase 98.4 1.1E-08 3.6E-13 102.6 -3.6 50 393-443 14-65 (200)
183 2dhr_A FTSH; AAA+ protein, hex 98.4 8.4E-09 2.9E-13 117.6 -5.0 139 378-544 42-188 (499)
184 3kta_A Chromosome segregation 98.4 2.2E-08 7.4E-13 98.4 -1.7 66 395-461 18-89 (182)
185 1zu4_A FTSY; GTPase, signal re 98.3 1.2E-07 4.2E-12 102.2 2.3 69 393-461 94-172 (320)
186 1jjv_A Dephospho-COA kinase; P 98.3 3.5E-07 1.2E-11 91.6 4.0 69 515-586 60-131 (206)
187 3vaa_A Shikimate kinase, SK; s 98.3 2.7E-07 9.4E-12 92.1 2.8 44 385-428 5-49 (199)
188 3hr8_A Protein RECA; alpha and 98.3 4.8E-07 1.7E-11 98.7 4.8 59 401-462 58-117 (356)
189 2z43_A DNA repair and recombin 98.2 1.5E-06 5E-11 93.9 7.4 129 400-574 103-259 (324)
190 2vp4_A Deoxynucleoside kinase; 98.2 9.8E-08 3.3E-12 97.9 -2.5 65 397-465 13-87 (230)
191 2ffh_A Protein (FFH); SRP54, s 98.2 4.1E-06 1.4E-10 93.4 10.0 163 377-571 77-246 (425)
192 3ice_A Transcription terminati 98.2 1.9E-07 6.6E-12 101.7 -0.8 56 372-428 129-198 (422)
193 2e87_A Hypothetical protein PH 98.1 3.5E-06 1.2E-10 92.2 8.4 62 512-574 229-293 (357)
194 2xau_A PRE-mRNA-splicing facto 98.1 3.3E-06 1.1E-10 101.5 8.4 65 513-577 189-256 (773)
195 3m6a_A ATP-dependent protease 98.1 9.4E-07 3.2E-11 102.1 2.2 58 379-439 86-143 (543)
196 1uf9_A TT1252 protein; P-loop, 98.0 6.6E-08 2.3E-12 96.2 -6.8 33 404-441 8-40 (203)
197 1knq_A Gluconate kinase; ALFA/ 98.0 1.1E-06 3.8E-11 85.4 2.1 53 402-460 6-59 (175)
198 2eyu_A Twitching motility prot 98.0 1.4E-06 4.8E-11 91.2 2.6 60 522-587 88-147 (261)
199 3kl4_A SRP54, signal recogniti 97.9 8.7E-06 3E-10 91.0 6.8 41 403-443 96-136 (433)
200 4a1f_A DNAB helicase, replicat 97.9 1.6E-05 5.4E-10 86.1 8.1 121 393-569 35-162 (338)
201 1fnn_A CDC6P, cell division co 97.8 4.7E-05 1.6E-09 83.1 10.6 44 531-575 124-171 (389)
202 1rz3_A Hypothetical protein rb 97.8 3.8E-06 1.3E-10 84.0 1.6 48 400-447 18-65 (201)
203 3tqc_A Pantothenate kinase; bi 97.8 5.4E-06 1.9E-10 89.2 1.5 123 393-547 75-211 (321)
204 3b9p_A CG5977-PA, isoform A; A 97.8 6.1E-05 2.1E-09 79.5 9.6 71 516-586 97-187 (297)
205 1v5w_A DMC1, meiotic recombina 97.8 2.9E-05 9.9E-10 84.4 7.1 41 400-440 118-165 (343)
206 1sxj_C Activator 1 40 kDa subu 97.7 8.7E-06 3E-10 88.2 2.6 42 392-433 32-75 (340)
207 1ypw_A Transitional endoplasmi 97.7 1.5E-05 5.1E-10 96.3 4.0 32 399-430 233-264 (806)
208 2pez_A Bifunctional 3'-phospho 97.7 4.8E-06 1.6E-10 81.3 -0.8 41 402-443 3-45 (179)
209 3lxx_A GTPase IMAP family memb 97.6 0.00026 9E-09 72.3 11.3 28 406-433 31-58 (239)
210 2z4s_A Chromosomal replication 97.6 6.8E-05 2.3E-09 84.3 7.2 66 532-597 194-264 (440)
211 1lv7_A FTSH; alpha/beta domain 97.6 0.00023 7.9E-09 73.5 10.7 45 393-441 36-80 (257)
212 2qby_A CDC6 homolog 1, cell di 97.5 2.7E-05 9.4E-10 84.6 2.5 30 402-431 43-72 (386)
213 3qf4_B Uncharacterized ABC tra 97.5 0.00072 2.5E-08 78.9 14.4 108 668-778 24-131 (598)
214 2qor_A Guanylate kinase; phosp 97.5 2.5E-05 8.6E-10 78.0 1.7 54 400-453 8-72 (204)
215 3llm_A ATP-dependent RNA helic 97.5 0.00011 3.9E-09 75.0 6.6 132 401-568 73-213 (235)
216 4eaq_A DTMP kinase, thymidylat 97.5 4.5E-05 1.5E-09 78.0 3.6 46 393-439 12-60 (229)
217 1mky_A Probable GTP-binding pr 97.4 6.3E-05 2.2E-09 84.5 4.3 69 406-474 182-263 (439)
218 1m7g_A Adenylylsulfate kinase; 97.4 2E-05 6.8E-10 79.3 -0.1 43 399-441 20-64 (211)
219 1l8q_A Chromosomal replication 97.4 0.00019 6.6E-09 76.8 6.9 29 403-431 36-64 (324)
220 2p67_A LAO/AO transport system 97.4 2.6E-05 9E-10 84.7 -0.1 51 393-443 45-95 (341)
221 1ega_A Protein (GTP-binding pr 97.4 0.00015 5.1E-09 77.3 5.7 139 404-575 8-161 (301)
222 3r20_A Cytidylate kinase; stru 97.3 1.6E-05 5.4E-10 81.6 -1.9 55 404-458 9-75 (233)
223 1f6b_A SAR1; gtpases, N-termin 97.3 5.7E-05 1.9E-09 74.9 2.1 42 383-426 6-47 (198)
224 3bh0_A DNAB-like replicative h 97.3 0.00019 6.5E-09 77.0 6.2 107 393-544 57-163 (315)
225 1u94_A RECA protein, recombina 97.3 0.00096 3.3E-08 72.7 11.8 46 393-439 50-99 (356)
226 4a82_A Cystic fibrosis transme 97.3 0.001 3.5E-08 77.3 12.7 110 670-779 3-116 (578)
227 2w58_A DNAI, primosome compone 97.3 0.00024 8.4E-09 70.3 6.4 27 405-431 55-81 (202)
228 1kag_A SKI, shikimate kinase I 97.3 0.0001 3.5E-09 71.1 3.2 33 403-439 3-35 (173)
229 3bos_A Putative DNA replicatio 97.2 0.00016 5.4E-09 73.0 3.7 28 403-430 51-78 (242)
230 1sxj_D Activator 1 41 kDa subu 97.2 0.00011 3.6E-09 79.3 2.3 43 532-575 133-175 (353)
231 1m2o_B GTP-binding protein SAR 97.2 0.00021 7.3E-09 70.1 4.3 33 393-426 13-45 (190)
232 2www_A Methylmalonic aciduria 97.2 9E-05 3.1E-09 80.7 1.5 43 402-444 72-114 (349)
233 2jaq_A Deoxyguanosine kinase; 97.2 3E-05 1E-09 76.7 -2.2 69 406-474 2-86 (205)
234 3h4m_A Proteasome-activating n 97.2 0.00086 3E-08 70.1 9.0 28 401-428 48-75 (285)
235 2yl4_A ATP-binding cassette SU 97.2 0.0016 5.6E-08 75.8 12.2 109 670-778 8-116 (595)
236 3qf4_A ABC transporter, ATP-bi 97.2 0.0016 5.5E-08 75.8 11.9 104 672-778 14-117 (587)
237 3cf0_A Transitional endoplasmi 97.1 0.00047 1.6E-08 73.2 6.1 39 399-439 44-82 (301)
238 4fcw_A Chaperone protein CLPB; 97.1 0.00048 1.6E-08 72.8 6.0 30 405-434 48-77 (311)
239 2gj8_A MNME, tRNA modification 97.0 0.00035 1.2E-08 67.5 4.2 27 402-428 2-28 (172)
240 1njg_A DNA polymerase III subu 97.0 0.00093 3.2E-08 66.8 7.2 45 531-576 125-169 (250)
241 4dcu_A GTP-binding protein ENG 96.9 0.00069 2.4E-08 76.4 5.9 56 518-576 88-144 (456)
242 1y63_A LMAJ004144AAA protein; 96.9 0.00041 1.4E-08 68.0 3.3 32 396-427 2-33 (184)
243 2i1q_A DNA repair and recombin 96.9 0.0011 3.8E-08 70.9 6.8 27 400-426 94-120 (322)
244 1j8m_F SRP54, signal recogniti 96.9 0.00015 5.2E-09 77.1 -0.0 50 395-445 89-139 (297)
245 3uk6_A RUVB-like 2; hexameric 96.9 0.0018 6E-08 70.3 8.3 40 402-441 68-107 (368)
246 2p5t_B PEZT; postsegregational 96.8 0.00031 1.1E-08 72.7 1.8 43 400-444 28-70 (253)
247 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00062 2.1E-08 64.7 3.7 34 395-429 15-49 (149)
248 3b60_A Lipid A export ATP-bind 96.8 0.0065 2.2E-07 70.6 12.9 107 669-779 13-120 (582)
249 2qag_A Septin-2, protein NEDD5 96.8 0.00013 4.4E-09 79.8 -1.8 59 373-439 14-72 (361)
250 3n70_A Transport activator; si 96.7 0.0036 1.2E-07 58.7 8.1 30 402-431 22-51 (145)
251 2yvu_A Probable adenylyl-sulfa 96.7 0.0004 1.4E-08 67.9 1.5 40 400-439 9-49 (186)
252 1lw7_A Transcriptional regulat 96.7 2.8E-05 9.4E-10 85.2 -7.9 85 514-600 258-354 (365)
253 2q6t_A DNAB replication FORK h 96.7 0.002 6.9E-08 72.3 7.1 105 393-544 189-294 (444)
254 3t61_A Gluconokinase; PSI-biol 96.7 0.00047 1.6E-08 68.4 1.7 35 404-442 18-52 (202)
255 1ex7_A Guanylate kinase; subst 96.7 0.0008 2.7E-08 66.5 3.2 74 406-488 3-89 (186)
256 2wji_A Ferrous iron transport 96.6 0.0012 4.2E-08 62.9 4.4 23 406-428 5-27 (165)
257 1np6_A Molybdopterin-guanine d 96.6 0.00079 2.7E-08 65.8 2.7 38 404-441 6-46 (174)
258 2ohf_A Protein OLA1, GTP-bindi 96.6 0.001 3.5E-08 73.3 3.8 41 400-440 18-69 (396)
259 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.009 3.1E-07 61.1 10.7 26 403-428 38-63 (262)
260 3d8b_A Fidgetin-like protein 1 96.6 0.0068 2.3E-07 65.9 10.2 27 402-428 115-141 (357)
261 2wjg_A FEOB, ferrous iron tran 96.5 0.0012 4.2E-08 63.8 3.7 22 406-427 9-30 (188)
262 3lxw_A GTPase IMAP family memb 96.4 0.0081 2.8E-07 61.7 9.1 59 516-575 86-151 (247)
263 2v1u_A Cell division control p 96.4 0.0031 1E-07 68.3 5.8 28 402-429 42-69 (387)
264 3t15_A Ribulose bisphosphate c 96.4 0.0054 1.8E-07 64.8 7.6 26 403-428 35-60 (293)
265 3dm5_A SRP54, signal recogniti 96.3 0.0097 3.3E-07 66.4 9.8 35 403-437 99-133 (443)
266 2ewv_A Twitching motility prot 96.3 0.0016 5.5E-08 71.4 3.2 58 522-585 199-256 (372)
267 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.022 7.5E-07 60.9 11.9 27 402-428 43-69 (322)
268 2zej_A Dardarin, leucine-rich 96.3 0.0019 6.6E-08 62.7 3.2 26 406-431 4-29 (184)
269 1qhx_A CPT, protein (chloramph 96.2 0.0021 7.2E-08 61.9 3.4 27 403-429 2-28 (178)
270 1xp8_A RECA protein, recombina 96.2 0.016 5.6E-07 63.2 10.7 28 400-427 70-97 (366)
271 3ihw_A Centg3; RAS, centaurin, 96.2 0.0038 1.3E-07 60.7 5.1 35 406-440 22-65 (184)
272 2if2_A Dephospho-COA kinase; a 96.2 0.0022 7.6E-08 63.4 3.2 21 406-426 3-23 (204)
273 2chg_A Replication factor C sm 96.2 0.019 6.5E-07 56.3 10.0 42 531-573 101-142 (226)
274 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0079 2.7E-07 64.3 7.5 28 399-426 118-145 (331)
275 3syl_A Protein CBBX; photosynt 96.2 0.025 8.4E-07 59.5 11.4 26 403-428 66-91 (309)
276 1gtv_A TMK, thymidylate kinase 96.2 0.0008 2.7E-08 67.0 -0.2 88 406-513 2-97 (214)
277 3cm0_A Adenylate kinase; ATP-b 96.1 0.0023 7.8E-08 62.2 2.8 27 402-428 2-28 (186)
278 3qks_A DNA double-strand break 96.1 0.0031 1E-07 63.0 3.7 29 396-425 16-44 (203)
279 3kb2_A SPBC2 prophage-derived 96.1 0.0023 7.9E-08 61.1 2.6 24 406-429 3-26 (173)
280 2orw_A Thymidine kinase; TMTK, 96.1 0.0042 1.4E-07 61.0 4.5 26 403-428 2-28 (184)
281 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0013 4.5E-08 71.2 0.9 36 393-428 11-48 (359)
282 1gvn_B Zeta; postsegregational 95.9 0.0036 1.2E-07 66.0 3.6 35 403-439 32-66 (287)
283 2v54_A DTMP kinase, thymidylat 95.9 0.0042 1.4E-07 61.2 3.7 26 403-428 3-28 (204)
284 1kht_A Adenylate kinase; phosp 95.9 0.004 1.4E-07 60.4 3.5 27 403-429 2-28 (192)
285 2r62_A Cell division protease 95.9 0.0036 1.2E-07 64.7 3.3 33 394-428 36-68 (268)
286 3trf_A Shikimate kinase, SK; a 95.9 0.004 1.4E-07 60.4 3.4 26 403-428 4-29 (185)
287 4ag6_A VIRB4 ATPase, type IV s 95.9 0.0038 1.3E-07 68.7 3.5 58 531-588 261-335 (392)
288 1tue_A Replication protein E1; 95.9 0.0072 2.5E-07 60.4 5.1 28 401-428 55-82 (212)
289 3co5_A Putative two-component 95.8 0.014 4.6E-07 54.6 6.5 28 402-429 25-52 (143)
290 3lw7_A Adenylate kinase relate 95.8 0.0045 1.5E-07 58.8 3.1 19 406-424 3-21 (179)
291 1ko7_A HPR kinase/phosphatase; 95.7 0.0031 1.1E-07 67.3 2.1 33 393-426 134-166 (314)
292 2rhm_A Putative kinase; P-loop 95.7 0.0039 1.3E-07 60.7 2.7 27 402-428 3-29 (193)
293 1fzq_A ADP-ribosylation factor 95.7 0.0041 1.4E-07 60.2 2.8 23 405-427 17-39 (181)
294 1jal_A YCHF protein; nucleotid 95.7 0.0074 2.5E-07 65.7 4.8 36 404-439 2-48 (363)
295 3zvl_A Bifunctional polynucleo 95.7 0.028 9.5E-07 62.4 9.5 30 399-428 253-282 (416)
296 3iij_A Coilin-interacting nucl 95.7 0.0039 1.3E-07 60.3 2.3 27 402-428 9-35 (180)
297 1q3t_A Cytidylate kinase; nucl 95.6 0.0055 1.9E-07 62.3 3.4 28 401-428 13-40 (236)
298 1jr3_A DNA polymerase III subu 95.6 0.026 8.9E-07 60.9 8.8 43 532-575 119-161 (373)
299 2b8t_A Thymidine kinase; deoxy 95.6 0.0073 2.5E-07 61.3 4.0 51 532-586 89-150 (223)
300 2r8r_A Sensor protein; KDPD, P 95.6 0.0069 2.4E-07 61.4 3.8 43 529-571 81-125 (228)
301 3cmw_A Protein RECA, recombina 95.6 0.03 1E-06 71.8 10.4 39 401-439 729-768 (1706)
302 2c95_A Adenylate kinase 1; tra 95.6 0.0045 1.5E-07 60.5 2.3 27 402-428 7-33 (196)
303 2qp9_X Vacuolar protein sortin 95.5 0.027 9.3E-07 61.1 8.7 27 402-428 82-108 (355)
304 2plr_A DTMP kinase, probable t 95.5 0.0052 1.8E-07 60.7 2.7 28 403-430 3-30 (213)
305 2wwf_A Thymidilate kinase, put 95.5 0.0063 2.2E-07 60.3 3.3 27 402-428 8-34 (212)
306 1xjc_A MOBB protein homolog; s 95.5 0.0049 1.7E-07 59.8 2.2 36 405-440 5-43 (169)
307 2bwj_A Adenylate kinase 5; pho 95.5 0.0023 7.9E-08 62.7 -0.2 29 400-428 8-36 (199)
308 1vht_A Dephospho-COA kinase; s 95.5 0.0065 2.2E-07 60.8 3.1 32 403-439 3-34 (218)
309 3u61_B DNA polymerase accessor 95.5 0.028 9.5E-07 59.7 8.3 44 532-576 105-149 (324)
310 1nn5_A Similar to deoxythymidy 95.4 0.007 2.4E-07 60.0 3.2 28 401-428 6-33 (215)
311 4b4t_L 26S protease subunit RP 95.4 0.039 1.3E-06 61.5 9.3 29 401-429 212-240 (437)
312 1ly1_A Polynucleotide kinase; 95.3 0.0079 2.7E-07 57.7 3.1 22 405-426 3-24 (181)
313 2qby_B CDC6 homolog 3, cell di 95.3 0.005 1.7E-07 66.9 1.8 26 403-428 44-69 (384)
314 1via_A Shikimate kinase; struc 95.3 0.0075 2.6E-07 58.1 2.9 23 406-428 6-28 (175)
315 3io5_A Recombination and repai 95.2 0.038 1.3E-06 58.8 8.2 38 401-439 26-66 (333)
316 2vli_A Antibiotic resistance p 95.2 0.0064 2.2E-07 58.7 2.2 28 402-429 3-30 (183)
317 1hqc_A RUVB; extended AAA-ATPa 95.2 0.048 1.7E-06 57.6 9.2 26 403-428 37-62 (324)
318 3eie_A Vacuolar protein sortin 95.2 0.049 1.7E-06 58.0 9.2 27 402-428 49-75 (322)
319 3bgw_A DNAB-like replicative h 95.1 0.01 3.5E-07 66.5 3.8 34 393-426 186-219 (444)
320 1tev_A UMP-CMP kinase; ploop, 95.1 0.0098 3.3E-07 57.8 3.2 26 403-428 2-27 (196)
321 2lkc_A Translation initiation 95.1 0.022 7.4E-07 54.1 5.5 26 402-427 6-31 (178)
322 2ze6_A Isopentenyl transferase 95.1 0.0087 3E-07 61.8 2.9 24 406-429 3-26 (253)
323 3cbq_A GTP-binding protein REM 95.1 0.0095 3.2E-07 58.5 3.0 22 406-427 25-46 (195)
324 2fn4_A P23, RAS-related protei 95.1 0.017 5.7E-07 55.0 4.6 22 406-427 11-32 (181)
325 3hu3_A Transitional endoplasmi 95.0 0.056 1.9E-06 61.3 9.5 28 401-428 235-262 (489)
326 1nks_A Adenylate kinase; therm 95.0 0.01 3.4E-07 57.6 2.9 24 406-429 3-26 (194)
327 1aky_A Adenylate kinase; ATP:A 95.0 0.01 3.5E-07 59.4 3.0 27 402-428 2-28 (220)
328 2erx_A GTP-binding protein DI- 95.0 0.02 6.8E-07 53.8 4.8 21 406-426 5-25 (172)
329 2zan_A Vacuolar protein sortin 95.0 0.063 2.2E-06 60.0 9.7 27 402-428 165-191 (444)
330 4b4t_K 26S protease regulatory 95.0 0.054 1.9E-06 60.2 8.9 29 401-429 203-231 (428)
331 3vfd_A Spastin; ATPase, microt 94.9 0.076 2.6E-06 58.1 9.9 27 402-428 146-172 (389)
332 2dby_A GTP-binding protein; GD 94.9 0.012 4E-07 64.3 3.2 23 406-428 3-25 (368)
333 2z0h_A DTMP kinase, thymidylat 94.8 0.013 4.5E-07 57.1 3.2 23 406-428 2-24 (197)
334 2cdn_A Adenylate kinase; phosp 94.8 0.015 5.1E-07 57.3 3.6 26 403-428 19-44 (201)
335 1sxj_B Activator 1 37 kDa subu 94.8 0.028 9.4E-07 59.2 5.9 43 532-575 107-149 (323)
336 1zd8_A GTP:AMP phosphotransfer 94.8 0.012 4.1E-07 59.3 2.9 27 402-428 5-31 (227)
337 1ukz_A Uridylate kinase; trans 94.8 0.011 3.9E-07 58.1 2.6 25 404-428 15-39 (203)
338 3fb4_A Adenylate kinase; psych 94.8 0.011 3.9E-07 58.8 2.5 23 406-428 2-24 (216)
339 2iyv_A Shikimate kinase, SK; t 94.8 0.013 4.5E-07 56.7 2.9 25 404-428 2-26 (184)
340 1zuh_A Shikimate kinase; alpha 94.7 0.016 5.4E-07 55.3 3.4 25 404-428 7-31 (168)
341 1zak_A Adenylate kinase; ATP:A 94.7 0.01 3.5E-07 59.5 2.1 27 403-429 4-30 (222)
342 2ew1_A RAS-related protein RAB 94.7 0.022 7.7E-07 56.2 4.6 21 406-426 28-48 (201)
343 3dl0_A Adenylate kinase; phosp 94.7 0.013 4.5E-07 58.4 2.9 23 406-428 2-24 (216)
344 1e6c_A Shikimate kinase; phosp 94.7 0.015 5E-07 55.6 3.1 24 405-428 3-26 (173)
345 3ake_A Cytidylate kinase; CMP 94.7 0.012 4.2E-07 57.8 2.5 23 406-428 4-26 (208)
346 4b4t_M 26S protease regulatory 94.7 0.07 2.4E-06 59.4 8.8 30 400-429 211-240 (434)
347 1z2a_A RAS-related protein RAB 94.6 0.016 5.5E-07 54.3 3.1 22 406-427 7-28 (168)
348 1z0j_A RAB-22, RAS-related pro 94.6 0.023 7.8E-07 53.3 4.2 23 406-428 8-30 (170)
349 3pfi_A Holliday junction ATP-d 94.6 0.093 3.2E-06 55.9 9.5 25 405-429 56-80 (338)
350 3iby_A Ferrous iron transport 94.6 0.016 5.5E-07 59.9 3.3 23 406-428 3-25 (256)
351 2pt5_A Shikimate kinase, SK; a 94.6 0.018 6.1E-07 54.7 3.3 23 406-428 2-24 (168)
352 1ksh_A ARF-like protein 2; sma 94.5 0.033 1.1E-06 53.5 5.2 25 403-427 17-41 (186)
353 2pbr_A DTMP kinase, thymidylat 94.5 0.017 6E-07 56.0 3.2 23 406-428 2-24 (195)
354 1kao_A RAP2A; GTP-binding prot 94.5 0.018 6.1E-07 53.8 3.1 21 406-426 5-25 (167)
355 2nzj_A GTP-binding protein REM 94.5 0.019 6.5E-07 54.3 3.3 23 406-428 6-28 (175)
356 2ged_A SR-beta, signal recogni 94.5 0.018 6.2E-07 55.7 3.1 24 405-428 49-72 (193)
357 4b4t_J 26S protease regulatory 94.5 0.086 3E-06 58.0 8.8 29 401-429 179-207 (405)
358 2grj_A Dephospho-COA kinase; T 94.5 0.018 6.3E-07 56.9 3.2 24 405-428 13-36 (192)
359 3clv_A RAB5 protein, putative; 94.4 0.024 8.2E-07 54.8 3.9 22 406-427 9-30 (208)
360 1r2q_A RAS-related protein RAB 94.4 0.027 9.1E-07 52.8 4.1 21 406-426 8-28 (170)
361 2oil_A CATX-8, RAS-related pro 94.4 0.026 8.9E-07 54.7 4.2 22 406-427 27-48 (193)
362 3pxi_A Negative regulator of g 94.4 0.053 1.8E-06 64.9 7.7 23 406-428 523-545 (758)
363 1qf9_A UMP/CMP kinase, protein 94.4 0.017 5.7E-07 56.0 2.7 25 404-428 6-30 (194)
364 2dyk_A GTP-binding protein; GT 94.4 0.02 6.8E-07 53.3 3.1 23 406-428 3-25 (161)
365 3q72_A GTP-binding protein RAD 94.4 0.016 5.4E-07 54.4 2.5 23 406-428 4-26 (166)
366 3q85_A GTP-binding protein REM 94.4 0.02 7E-07 53.8 3.2 23 406-428 4-26 (169)
367 1u8z_A RAS-related protein RAL 94.4 0.02 6.7E-07 53.5 3.1 22 406-427 6-27 (168)
368 3k53_A Ferrous iron transport 94.4 0.017 5.8E-07 60.0 2.9 24 406-429 5-28 (271)
369 2ce2_X GTPase HRAS; signaling 94.4 0.018 6.1E-07 53.6 2.7 22 406-427 5-26 (166)
370 2bcg_Y Protein YP2, GTP-bindin 94.4 0.03 1E-06 54.9 4.5 22 406-427 10-31 (206)
371 1a7j_A Phosphoribulokinase; tr 94.3 0.011 3.9E-07 62.3 1.4 26 403-428 4-29 (290)
372 1uj2_A Uridine-cytidine kinase 94.3 0.018 6.3E-07 59.0 3.0 25 405-429 23-47 (252)
373 1z08_A RAS-related protein RAB 94.3 0.021 7.2E-07 53.7 3.1 22 406-427 8-29 (170)
374 3auy_A DNA double-strand break 94.3 0.019 6.5E-07 62.7 3.2 31 394-425 16-46 (371)
375 1c1y_A RAS-related protein RAP 94.3 0.021 7.2E-07 53.4 3.1 21 406-426 5-25 (167)
376 1ek0_A Protein (GTP-binding pr 94.3 0.021 7.3E-07 53.5 3.1 22 406-427 5-26 (170)
377 3tlx_A Adenylate kinase 2; str 94.3 0.02 7E-07 58.5 3.2 26 403-428 28-53 (243)
378 1ky3_A GTP-binding protein YPT 94.3 0.022 7.4E-07 54.2 3.1 22 406-427 10-31 (182)
379 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.022 7.5E-07 54.0 3.1 22 406-427 9-30 (177)
380 3a4m_A L-seryl-tRNA(SEC) kinas 94.2 0.021 7.3E-07 59.0 3.3 27 402-428 2-28 (260)
381 1g16_A RAS-related protein SEC 94.2 0.02 6.7E-07 53.8 2.7 22 406-427 5-26 (170)
382 3t1o_A Gliding protein MGLA; G 94.2 0.023 7.9E-07 54.8 3.3 25 406-430 16-40 (198)
383 1m7b_A RND3/RHOE small GTP-bin 94.1 0.028 9.7E-07 54.1 3.7 22 406-427 9-30 (184)
384 3e1s_A Exodeoxyribonuclease V, 94.1 0.023 7.7E-07 65.9 3.4 28 403-430 203-230 (574)
385 3tw8_B RAS-related protein RAB 94.1 0.023 7.7E-07 54.0 2.9 22 406-427 11-32 (181)
386 3a8t_A Adenylate isopentenyltr 94.1 0.026 9E-07 60.6 3.6 27 403-429 39-65 (339)
387 1ypw_A Transitional endoplasmi 94.1 0.004 1.4E-07 75.1 -3.1 45 396-442 503-547 (806)
388 1svi_A GTP-binding protein YSX 94.1 0.021 7.3E-07 55.2 2.7 24 404-427 23-46 (195)
389 3cmu_A Protein RECA, recombina 94.0 0.17 5.9E-06 65.8 11.5 35 393-427 1068-1104(2050)
390 3t5d_A Septin-7; GTP-binding p 94.0 0.021 7E-07 59.5 2.5 22 406-427 10-31 (274)
391 3b1v_A Ferrous iron uptake tra 94.0 0.026 9E-07 58.9 3.3 23 406-428 5-27 (272)
392 1iqp_A RFCS; clamp loader, ext 94.0 0.027 9.2E-07 59.4 3.4 42 532-574 110-151 (327)
393 3pqc_A Probable GTP-binding pr 94.0 0.023 7.8E-07 54.8 2.7 23 406-428 25-47 (195)
394 4dsu_A GTPase KRAS, isoform 2B 94.0 0.027 9.2E-07 54.0 3.1 22 406-427 6-27 (189)
395 3bc1_A RAS-related protein RAB 94.0 0.026 9E-07 54.1 3.1 21 406-426 13-33 (195)
396 2hxs_A RAB-26, RAS-related pro 93.9 0.03 1E-06 53.1 3.4 22 406-427 8-29 (178)
397 4b4t_I 26S protease regulatory 93.9 0.15 5.3E-06 56.4 9.4 29 401-429 213-241 (437)
398 3cmu_A Protein RECA, recombina 93.9 0.26 8.9E-06 64.2 12.8 39 401-439 380-419 (2050)
399 1r8s_A ADP-ribosylation factor 93.9 0.028 9.7E-07 52.5 3.1 21 406-426 2-22 (164)
400 2f6r_A COA synthase, bifunctio 93.9 0.025 8.4E-07 59.3 2.9 23 404-426 75-97 (281)
401 1upt_A ARL1, ADP-ribosylation 93.8 0.029 9.9E-07 52.8 3.1 22 405-426 8-29 (171)
402 3be4_A Adenylate kinase; malar 93.8 0.027 9.3E-07 56.3 2.9 26 403-428 4-29 (217)
403 2cxx_A Probable GTP-binding pr 93.8 0.026 8.8E-07 54.2 2.7 22 406-427 3-24 (190)
404 2g6b_A RAS-related protein RAB 93.8 0.03 1E-06 53.2 3.1 22 406-427 12-33 (180)
405 2qmh_A HPR kinase/phosphorylas 93.8 0.042 1.4E-06 54.6 4.1 35 393-428 24-58 (205)
406 2y8e_A RAB-protein 6, GH09086P 93.7 0.027 9.4E-07 53.3 2.7 21 406-426 16-36 (179)
407 4bas_A ADP-ribosylation factor 93.7 0.037 1.3E-06 53.6 3.7 22 405-426 18-39 (199)
408 3t5g_A GTP-binding protein RHE 93.7 0.046 1.6E-06 52.1 4.3 20 406-425 8-27 (181)
409 2efe_B Small GTP-binding prote 93.7 0.032 1.1E-06 53.1 3.1 22 406-427 14-35 (181)
410 3cmw_A Protein RECA, recombina 93.7 0.28 9.7E-06 63.0 12.5 28 401-428 380-407 (1706)
411 1z0f_A RAB14, member RAS oncog 93.7 0.032 1.1E-06 52.8 3.1 22 406-427 17-38 (179)
412 3con_A GTPase NRAS; structural 93.6 0.033 1.1E-06 53.7 3.1 22 406-427 23-44 (190)
413 2h92_A Cytidylate kinase; ross 93.6 0.029 1E-06 55.8 2.8 25 404-428 3-27 (219)
414 2g3y_A GTP-binding protein GEM 93.6 0.059 2E-06 53.9 5.0 23 406-428 39-61 (211)
415 2a9k_A RAS-related protein RAL 93.6 0.034 1.1E-06 53.1 3.1 21 406-426 20-40 (187)
416 1wf3_A GTP-binding protein; GT 93.6 0.033 1.1E-06 59.0 3.2 22 406-427 9-30 (301)
417 2gf0_A GTP-binding protein DI- 93.6 0.048 1.7E-06 52.8 4.2 21 406-426 10-30 (199)
418 3tmk_A Thymidylate kinase; pho 93.5 0.038 1.3E-06 55.7 3.4 29 402-430 3-31 (216)
419 3v9p_A DTMP kinase, thymidylat 93.5 0.034 1.2E-06 56.5 3.0 28 402-429 23-50 (227)
420 2gf9_A RAS-related protein RAB 93.4 0.037 1.3E-06 53.5 3.1 22 406-427 24-45 (189)
421 2xb4_A Adenylate kinase; ATP-b 93.4 0.038 1.3E-06 55.6 3.3 23 406-428 2-24 (223)
422 2bme_A RAB4A, RAS-related prot 93.4 0.034 1.2E-06 53.3 2.7 22 406-427 12-33 (186)
423 3kkq_A RAS-related protein M-R 93.4 0.038 1.3E-06 52.8 3.1 21 406-426 20-40 (183)
424 1vg8_A RAS-related protein RAB 93.4 0.038 1.3E-06 54.0 3.1 23 406-428 10-32 (207)
425 2xtp_A GTPase IMAP family memb 93.4 0.035 1.2E-06 57.0 2.9 22 406-427 24-45 (260)
426 2bov_A RAla, RAS-related prote 93.4 0.038 1.3E-06 53.9 3.1 22 406-427 16-37 (206)
427 1e4v_A Adenylate kinase; trans 93.4 0.035 1.2E-06 55.3 2.8 23 406-428 2-24 (214)
428 3d3q_A TRNA delta(2)-isopenten 93.4 0.034 1.2E-06 59.8 3.0 25 405-429 8-32 (340)
429 1gwn_A RHO-related GTP-binding 93.4 0.054 1.8E-06 53.6 4.2 22 406-427 30-51 (205)
430 3exa_A TRNA delta(2)-isopenten 93.3 0.041 1.4E-06 58.5 3.5 26 404-429 3-28 (322)
431 3iev_A GTP-binding protein ERA 93.3 0.038 1.3E-06 58.7 3.2 22 406-427 12-33 (308)
432 3reg_A RHO-like small GTPase; 93.3 0.062 2.1E-06 52.0 4.6 22 406-427 25-46 (194)
433 1jbk_A CLPB protein; beta barr 93.3 0.044 1.5E-06 52.3 3.4 28 402-429 41-68 (195)
434 1nrj_B SR-beta, signal recogni 93.3 0.039 1.3E-06 54.6 3.1 23 406-428 14-36 (218)
435 1ak2_A Adenylate kinase isoenz 93.3 0.045 1.5E-06 55.3 3.6 26 403-428 15-40 (233)
436 1z06_A RAS-related protein RAB 93.3 0.041 1.4E-06 53.1 3.1 21 406-426 22-42 (189)
437 4b4t_H 26S protease regulatory 93.2 0.18 6.1E-06 56.3 8.5 30 400-429 239-268 (467)
438 2fg5_A RAB-22B, RAS-related pr 93.2 0.037 1.3E-06 53.7 2.8 22 406-427 25-46 (192)
439 1zbd_A Rabphilin-3A; G protein 93.2 0.043 1.5E-06 53.5 3.2 22 406-427 10-31 (203)
440 1mh1_A RAC1; GTP-binding, GTPa 93.2 0.042 1.4E-06 52.4 3.1 21 406-426 7-27 (186)
441 1moz_A ARL1, ADP-ribosylation 93.2 0.025 8.7E-07 54.0 1.5 24 403-426 17-40 (183)
442 2cjw_A GTP-binding protein GEM 93.2 0.042 1.4E-06 53.6 3.1 22 406-427 8-29 (192)
443 1q57_A DNA primase/helicase; d 93.2 0.088 3E-06 59.8 6.2 36 394-429 232-267 (503)
444 3bwd_D RAC-like GTP-binding pr 93.2 0.049 1.7E-06 51.8 3.5 24 404-427 8-31 (182)
445 2fv8_A H6, RHO-related GTP-bin 93.2 0.021 7.1E-07 56.4 0.8 35 393-427 14-48 (207)
446 4edh_A DTMP kinase, thymidylat 93.1 0.045 1.5E-06 55.0 3.2 29 402-430 4-32 (213)
447 2qu8_A Putative nucleolar GTP- 93.1 0.042 1.4E-06 55.1 3.0 23 405-427 30-52 (228)
448 3tkl_A RAS-related protein RAB 93.1 0.055 1.9E-06 52.2 3.8 22 406-427 18-39 (196)
449 4dhe_A Probable GTP-binding pr 93.1 0.024 8.1E-07 56.4 1.1 25 404-428 29-53 (223)
450 3i8s_A Ferrous iron transport 93.1 0.041 1.4E-06 57.3 2.9 23 406-428 5-27 (274)
451 2a5j_A RAS-related protein RAB 93.0 0.046 1.6E-06 52.9 3.1 22 406-427 23-44 (191)
452 1sky_E F1-ATPase, F1-ATP synth 93.0 0.023 7.9E-07 63.7 1.0 37 393-430 141-177 (473)
453 2il1_A RAB12; G-protein, GDP, 93.0 0.043 1.5E-06 53.3 2.8 21 406-426 28-48 (192)
454 3oes_A GTPase rhebl1; small GT 93.0 0.041 1.4E-06 53.8 2.7 23 405-427 25-47 (201)
455 3a1s_A Iron(II) transport prot 93.0 0.048 1.6E-06 56.3 3.3 23 406-428 7-29 (258)
456 3umf_A Adenylate kinase; rossm 92.9 0.032 1.1E-06 56.3 1.8 29 401-429 26-54 (217)
457 3dz8_A RAS-related protein RAB 92.9 0.043 1.5E-06 53.1 2.7 23 406-428 25-47 (191)
458 3cph_A RAS-related protein SEC 92.9 0.049 1.7E-06 53.4 3.1 23 405-427 21-43 (213)
459 1x3s_A RAS-related protein RAB 92.9 0.05 1.7E-06 52.4 3.1 22 406-427 17-38 (195)
460 3lv8_A DTMP kinase, thymidylat 92.9 0.05 1.7E-06 55.6 3.2 28 403-430 26-53 (236)
461 1zd9_A ADP-ribosylation factor 92.9 0.051 1.7E-06 52.5 3.1 21 406-426 24-44 (188)
462 2atv_A RERG, RAS-like estrogen 92.9 0.051 1.8E-06 52.8 3.1 23 405-427 29-51 (196)
463 1zj6_A ADP-ribosylation factor 92.8 0.048 1.6E-06 52.5 2.9 23 404-426 16-38 (187)
464 3llu_A RAS-related GTP-binding 92.8 0.05 1.7E-06 53.0 3.1 25 406-430 22-46 (196)
465 1p5z_B DCK, deoxycytidine kina 92.8 0.033 1.1E-06 57.5 1.8 28 402-429 22-49 (263)
466 2wsm_A Hydrogenase expression/ 92.8 0.046 1.6E-06 54.3 2.8 24 405-428 31-54 (221)
467 4tmk_A Protein (thymidylate ki 92.8 0.054 1.8E-06 54.4 3.3 28 403-430 2-29 (213)
468 2p5s_A RAS and EF-hand domain 92.8 0.052 1.8E-06 53.0 3.1 24 404-427 28-51 (199)
469 2o52_A RAS-related protein RAB 92.8 0.048 1.6E-06 53.4 2.9 22 406-427 27-48 (200)
470 1ltq_A Polynucleotide kinase; 92.8 0.051 1.8E-06 56.9 3.3 23 405-427 3-25 (301)
471 2j37_W Signal recognition part 92.8 0.14 4.8E-06 58.1 7.0 26 404-429 101-126 (504)
472 3ld9_A DTMP kinase, thymidylat 92.8 0.053 1.8E-06 54.9 3.2 28 402-429 19-46 (223)
473 3crm_A TRNA delta(2)-isopenten 92.8 0.049 1.7E-06 58.2 3.1 25 405-429 6-30 (323)
474 3cnl_A YLQF, putative uncharac 92.8 0.053 1.8E-06 56.3 3.2 30 405-434 100-129 (262)
475 2h17_A ADP-ribosylation factor 92.7 0.044 1.5E-06 52.5 2.4 22 406-427 23-44 (181)
476 1jwy_B Dynamin A GTPase domain 92.7 0.048 1.7E-06 57.5 2.9 23 406-428 26-48 (315)
477 2f7s_A C25KG, RAS-related prot 92.7 0.059 2E-06 53.2 3.3 22 406-427 27-48 (217)
478 2ocp_A DGK, deoxyguanosine kin 92.7 0.047 1.6E-06 55.4 2.7 27 403-429 1-27 (241)
479 2iwr_A Centaurin gamma 1; ANK 92.6 0.043 1.5E-06 52.1 2.2 21 406-426 9-29 (178)
480 2h57_A ADP-ribosylation factor 92.6 0.041 1.4E-06 53.2 2.0 23 406-428 23-45 (190)
481 3c5c_A RAS-like protein 12; GD 92.6 0.059 2E-06 52.2 3.1 21 406-426 23-43 (187)
482 2q3h_A RAS homolog gene family 92.6 0.061 2.1E-06 52.4 3.2 23 405-427 21-43 (201)
483 3def_A T7I23.11 protein; chlor 92.6 0.053 1.8E-06 55.9 2.9 22 406-427 38-59 (262)
484 2fu5_C RAS-related protein RAB 92.5 0.04 1.4E-06 52.7 1.8 21 406-426 10-30 (183)
485 1h65_A Chloroplast outer envel 92.5 0.053 1.8E-06 56.2 2.9 23 406-428 41-63 (270)
486 2j1l_A RHO-related GTP-binding 92.5 0.056 1.9E-06 53.6 2.9 21 406-426 36-56 (214)
487 2axn_A 6-phosphofructo-2-kinas 92.5 0.12 4.1E-06 59.0 6.0 45 403-454 34-78 (520)
488 2fh5_B SR-beta, signal recogni 92.5 0.079 2.7E-06 52.2 3.9 24 405-428 8-31 (214)
489 3tqf_A HPR(Ser) kinase; transf 92.4 0.078 2.7E-06 51.4 3.6 33 393-426 6-38 (181)
490 3foz_A TRNA delta(2)-isopenten 92.4 0.06 2E-06 57.2 3.1 26 404-429 10-35 (316)
491 2aka_B Dynamin-1; fusion prote 92.4 0.052 1.8E-06 56.6 2.7 23 406-428 28-50 (299)
492 1a5t_A Delta prime, HOLB; zinc 92.4 0.32 1.1E-05 52.0 8.9 25 406-430 26-50 (334)
493 2gco_A H9, RHO-related GTP-bin 92.3 0.058 2E-06 52.8 2.7 22 406-427 27-48 (201)
494 2p65_A Hypothetical protein PF 92.3 0.055 1.9E-06 51.5 2.5 29 402-430 41-69 (187)
495 3q3j_B RHO-related GTP-binding 92.3 0.089 3E-06 52.2 4.1 22 406-427 29-50 (214)
496 3r7w_A Gtpase1, GTP-binding pr 92.2 0.068 2.3E-06 56.6 3.2 26 403-428 2-27 (307)
497 4gzl_A RAS-related C3 botulinu 92.2 0.1 3.4E-06 51.3 4.2 23 404-426 30-52 (204)
498 2b6h_A ADP-ribosylation factor 92.2 0.058 2E-06 52.5 2.5 24 403-426 28-51 (192)
499 2atx_A Small GTP binding prote 92.1 0.066 2.2E-06 51.8 2.8 22 406-427 20-41 (194)
500 2zts_A Putative uncharacterize 92.1 0.094 3.2E-06 52.8 4.0 24 401-424 27-50 (251)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3e-122 Score=1164.46 Aligned_cols=746 Identities=36% Similarity=0.532 Sum_probs=651.4
Q ss_pred CCccccchHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccC----------------CCchhhhh
Q 003976 29 PSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLS----------------SHPHRLTS 92 (782)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~----------------~~~~~~~~ 92 (782)
++..+++++++||+|++++++.++++|+++++++|++.|++++++|+++|.+.... .....+.+
T Consensus 54 ~~~~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (1321)
T 4f4c_A 54 EEVVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEH 133 (1321)
T ss_dssp -CCSSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHH
T ss_pred hcccCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHH
Confidence 33456789999999999999999999999999999999999999999999763210 01123455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 003976 93 RISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGD 172 (782)
Q Consensus 93 ~~~~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~ 172 (782)
.+..+++++++++++.+++.+++.+++.++++++..++|.++|+|++++|++|||+ .++|++++|+++|++.+++++++
T Consensus 134 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~-~~~G~l~sr~~~D~~~i~~~~~~ 212 (1321)
T 4f4c_A 134 DVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT-NHSGTLATKLFDNLERVKEGTGD 212 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH-TCCTTHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CChHHHHHHHHHHHHHHHHHHHH
Confidence 66777888889999999999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 003976 173 KTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFV 252 (782)
Q Consensus 173 ~~~~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~ 252 (782)
.++.++..+++++++++++|+++|++++++++++|+++++..++.+++++..++.++..+++++.++|+++||++||+||
T Consensus 213 ~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 292 (1321)
T 4f4c_A 213 KIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLN 292 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003976 253 GEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQA 332 (782)
Q Consensus 253 ~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l 332 (782)
+|+.+.++|.+..++..+...+.....++..++..++..+.+++++|+|++++.+|.+|+|++++++.++.....|+..+
T Consensus 293 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~ 372 (1321)
T 4f4c_A 293 GLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLA 372 (1321)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCC-cccccceEEeeCCCEEEEeC
Q 003976 333 APNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVG 411 (782)
Q Consensus 333 ~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~-~vL~~isl~i~~G~~vaivG 411 (782)
.+.+..++++.++++|++++++++|+. +..+..+..+.+.+|+|+|+||+|+||++++ ++|+|+||+|++||++||||
T Consensus 373 ~~~~~~~~~~~~s~~ri~~~l~~~~~~-~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG 451 (1321)
T 4f4c_A 373 GPQLAVLGTAQGAASGIYEVLDRKPVI-DSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVG 451 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCS-SCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccc-cccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEe
Confidence 999999999999999999999988776 3333333444566789999999999998765 49999999999999999999
Q ss_pred CCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHh
Q 003976 412 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAA 491 (782)
Q Consensus 412 ~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a 491 (782)
|||||||||+++|+|+|+|++|+|++||+|+++++.++||++||||+||||||++||||||+||+|+++++++++||+.|
T Consensus 452 ~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a 531 (1321)
T 4f4c_A 452 SSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMA 531 (1321)
T ss_dssp CSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEec
Q 003976 492 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 571 (782)
Q Consensus 492 ~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaH 571 (782)
++++||+.||+||||.|||+|.+||||||||||||||+++||+||||||||||||+++|+.|+++|+++.+|||+|+|||
T Consensus 532 ~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaH 611 (1321)
T 4f4c_A 532 NAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAH 611 (1321)
T ss_dssp TCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECS
T ss_pred cchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHHhhhcccC-----CCC---CCcccCCCCCCC-------CCC
Q 003976 572 RLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHL-----SNP---SSICYSGSSRYS-------SFR 636 (782)
Q Consensus 572 rl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~~~~~~~~-----~~~---~~~~~~~~~~~~-------~~~ 636 (782)
|++++++||+|+||++|+|+|+|||+||++++|.|+++++.|..... +.. +........... +..
T Consensus 612 rls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1321)
T 4f4c_A 612 RLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMD 691 (1321)
T ss_dssp CTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHHHHHHHHHHHCC--------------------------
T ss_pred cHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999987753211 000 000000000000 000
Q ss_pred CCCC------CcCccchh---hhh------h-hhhhccCCCCCCCCccHHHHHHHcccchHHHHHHHHHHHHHHhHHHHH
Q 003976 637 DFPS------SRRYDVEF---ESS------K-RRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLF 700 (782)
Q Consensus 637 ~~~~------~~~~~~~~---~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~p~~ 700 (782)
.... .......+ ..+ . ....++..........+++++...++.|++++++++++++.|+++|.+
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 771 (1321)
T 4f4c_A 692 DIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTY 771 (1321)
T ss_dssp ------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHH
T ss_pred chhhhhhccccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000000 000 0 000011112233445788888889999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Q 003976 701 ALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSGSFIFSFQFYIL 777 (782)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~f~~il~~~~~fFd~ 777 (782)
+++++.+++.+...+ .+......+|+++|++++++.+++.+++.+++.+++++++.++|.++|++++++|++|||.
T Consensus 772 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~ 847 (1321)
T 4f4c_A 772 SVFFTSFMNVFAGNP-ADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDS 847 (1321)
T ss_dssp HHHHHHHHHHTSSCS-STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTS
T ss_pred HHHHHHHHHHhcCCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcc
Confidence 999999998876543 3345667899999999999999999999999999999999999999999999999999974
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.8e-108 Score=1034.80 Aligned_cols=745 Identities=37% Similarity=0.645 Sum_probs=634.1
Q ss_pred ccccchHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccC------CC---------chhhhhHHH
Q 003976 31 KKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLS------SH---------PHRLTSRIS 95 (782)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~------~~---------~~~~~~~~~ 95 (782)
.+.+.+++++++|.++.++.+++++++++++.+++.|+++++++.++|.+.... .+ ...+...+.
T Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (1284)
T 3g5u_A 29 KKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMT 108 (1284)
T ss_dssp ----CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHH
Confidence 445678999999998888888999999999999999999999999999864210 00 001223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003976 96 EHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTG 175 (782)
Q Consensus 96 ~~~l~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~ 175 (782)
.+++++++++++.+++.+++.+++.+.++++..++|.++|+|++++|++|||+ .++|++++|+++|++.+++.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~-~~~G~l~sr~~~D~~~i~~~~~~~~~ 187 (1284)
T 3g5u_A 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV-HDVGELNTRLTDDVSKINEGIGDKIG 187 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS-CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888889999999999999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH
Q 003976 176 HALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 255 (782)
Q Consensus 176 ~~i~~~~~~i~~~~~~~~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~ 255 (782)
.++..+++++++++++++++|++++++++++|+++++..++.++.++..++.++..+++++.+.|+++|+++||+||+|+
T Consensus 188 ~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~ 267 (1284)
T 3g5u_A 188 MFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQK 267 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 256 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPN 335 (782)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~ 335 (782)
.+.++|.+..++..+...+.....+...++..++.++.+++++|+|++++..|.+++|+++++++++.....++.++.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~ 347 (1284)
T 3g5u_A 268 KELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPN 347 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999889888999999999999999999999999999998888877778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCC-cccccceEEeeCCCEEEEeCCCC
Q 003976 336 LAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGPSG 414 (782)
Q Consensus 336 ~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~-~vL~~isl~i~~G~~vaivG~sG 414 (782)
+..++++.++++|++++++.+|+. ++....+..+++..|+|+|+||+|+||++++ ++|+|+||+|++||++|||||||
T Consensus 348 ~~~~~~~~~a~~ri~~~l~~~~~~-~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sG 426 (1284)
T 3g5u_A 348 IEAFANARGAAYEVFKIIDNKPSI-DSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG 426 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCC-SSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcC-CcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCC
Confidence 999999999999999999987765 2212222333456789999999999987544 49999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhH
Q 003976 415 SGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 494 (782)
Q Consensus 415 sGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~ 494 (782)
||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|||+||++||+|||.+|.++.++++++++++.++++
T Consensus 427 sGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~ 506 (1284)
T 3g5u_A 427 CGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY 506 (1284)
T ss_dssp SSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred hHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 003976 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 574 (782)
Q Consensus 495 ~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~ 574 (782)
+++.+||+||||.+||+|.+||||||||||||||++++|+|||||||||+||+++|+.+++++++..+|+|+|+||||++
T Consensus 507 ~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 586 (1284)
T 3g5u_A 507 DFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586 (1284)
T ss_dssp HHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred HHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred hhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHHhhhcccCCCCCCc-ccCCCC-C--C-CCCCC-CCC-CcCc---
Q 003976 575 TVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSI-CYSGSS-R--Y-SSFRD-FPS-SRRY--- 644 (782)
Q Consensus 575 ~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~~~~~~~~~~~~~~-~~~~~~-~--~-~~~~~-~~~-~~~~--- 644 (782)
++++||+|+||++|+|+|+|+|+||++.++.|++++..|........... ...... . . ..... ... ....
T Consensus 587 ~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1284)
T 3g5u_A 587 TVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRK 666 (1284)
T ss_dssp HHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC----------------------------------------
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999977653221110000 000000 0 0 00000 000 0000
Q ss_pred c-chhhh-hhhhhhccCCCCCCCCccHHHHHHHcccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCc-hhhhh
Q 003976 645 D-VEFES-SKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHD-SQIKR 721 (782)
Q Consensus 645 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~-~~~~~ 721 (782)
. ..+.. ......++..........+++++++.++.|++++++++++++.+++.|.+.++++.++..+..... .....
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 746 (1284)
T 3g5u_A 667 SICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQ 746 (1284)
T ss_dssp -----------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred ccccccccccccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHH
Confidence 0 00000 000000001111122345667777888888888899999999999999999999999987765432 23456
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Q 003976 722 VVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSGSFIFSFQFYIL 777 (782)
Q Consensus 722 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~f~~il~~~~~fFd~ 777 (782)
....|+++|++++++.+++.+++.+++.+++++++.++|.++|++++++|++|||.
T Consensus 747 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~ 802 (1284)
T 3g5u_A 747 NSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDD 802 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC
Confidence 67789999999999999999999999999999999999999999999999999984
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.6e-102 Score=979.79 Aligned_cols=577 Identities=34% Similarity=0.536 Sum_probs=504.4
Q ss_pred cchHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003976 34 SGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAW 113 (782)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~ 113 (782)
+..+++++.+.+++ +..++++++++++.+.+.|.++++++..++.+... +.........+++++++++++..++.+
T Consensus 737 ~~~~~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~i~~~ 812 (1321)
T 4f4c_A 737 KTNLFEILYHARPH-ALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGN---PADFLSQGHFWALMFLVLAAAQGICSF 812 (1321)
T ss_dssp CCCHHHHHHHTGGG-HHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSC---SSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777665 66778888999999999999999999999886432 122233444567777788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 114 IGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTE-ARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGF 192 (782)
Q Consensus 114 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~ 192 (782)
+..+++.+.+.++..++|.++|++++++|++|||.. +++|++++|+++|++.+++.+...+..++..++.+++++++++
T Consensus 813 ~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~ 892 (1321)
T 4f4c_A 813 LMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAF 892 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeeh
Confidence 999999999999999999999999999999999852 3789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 003976 193 TSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQG 272 (782)
Q Consensus 193 ~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~ 272 (782)
+++|++++++++++|++++...++.++.++...+.++..++....+.|+++|+++||+|++|+.+.++|.+..+...+..
T Consensus 893 ~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~ 972 (1321)
T 4f4c_A 893 FYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEA 972 (1321)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888877777777777888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 273 KKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGK--AFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANII 350 (782)
Q Consensus 273 ~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~--l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~ 350 (782)
.+.....++..++...+..+..++++|+|+.++..|..+.+. ++.+++++.....+++.+...+..++++..+++|++
T Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~ 1052 (1321)
T 4f4c_A 973 IKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIF 1052 (1321)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888888888999999999999988876654 333333333334456677778889999999999999
Q ss_pred HHHhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCC-cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 351 SIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~-~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
++++.+++. +.. .......+..|+|+|+||+|+||++++ +||+|+||+|+|||+||||||||||||||+++|+|+|+
T Consensus 1053 ~~l~~~~~~-~~~-~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1053 GMLRKISKI-DSL-SLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp HHHHCCCSS-CTT-CCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred HHhhCcccC-CCc-cCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 999988775 222 222233456789999999999998765 49999999999999999999999999999999999999
Q ss_pred CCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCC--CCCCHHHHHHHHHHhhhHhHHhcCCCCcccc
Q 003976 430 PTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK--EDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 507 (782)
Q Consensus 430 ~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~--~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~ 507 (782)
|++|+|+|||+||+++++++||++|++|||||+||+|||||||+||. ++++++++++||+.|++++||.+||+||||.
T Consensus 1131 p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~ 1210 (1321)
T 4f4c_A 1131 TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETR 1210 (1321)
T ss_dssp CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSE
T ss_pred CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCE
Confidence 99999999999999999999999999999999999999999999994 4689999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeC
Q 003976 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 587 (782)
Q Consensus 508 vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~ 587 (782)
|||+|.+|||||||||||||||+|||+||||||||||||++||+.|+++|++..+|||+|+|||||+|+++||+|+|||+
T Consensus 1211 vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1211 VGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSN 1290 (1321)
T ss_dssp ETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESS
T ss_pred ecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecChhHHhhcCchhHHHHHhhhcc
Q 003976 588 GQVVESGTHVDLISKGGEYAALVNLQSSE 616 (782)
Q Consensus 588 G~ive~G~~~eL~~~~~~y~~l~~~~~~~ 616 (782)
|+|+|+|||+||++++|.|++|++.|..+
T Consensus 1291 G~IvE~Gth~eLl~~~g~y~~L~~~Q~~e 1319 (1321)
T 4f4c_A 1291 GTIIEKGTHTQLMSEKGAYYKLTQKQMTE 1319 (1321)
T ss_dssp SSEEEEECHHHHHHCC-------------
T ss_pred CEEEEECCHHHHHhCCcHHHHHHHHHHhc
Confidence 99999999999999999999999988643
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-96 Score=860.64 Aligned_cols=569 Identities=26% Similarity=0.381 Sum_probs=516.9
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 37 FLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGV 116 (782)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~ 116 (782)
++++++|.+++ +..++++++++++.+++.+..|+++++++|.+.... + ...+..+++++++++++..++.++..
T Consensus 11 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (587)
T 3qf4_A 11 SKTLARYLKPY-WIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG-D----FSLVLKTGILMLIVALIGAVGGIGCT 84 (587)
T ss_dssp CCCGGGGTGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-C----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777665 455677788888888888999999999999864321 1 22333445555566667778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 117 AFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVW 196 (782)
Q Consensus 117 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~w 196 (782)
++..+.+.++..++|.++|+|++++|+.||++ .++|++++|+++|++.+++.+...+..++..+++++++++++++++|
T Consensus 85 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 163 (587)
T 3qf4_A 85 VFASYASQNFGADLRRDLFRKVLSFSISNVNR-FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINV 163 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 59999999999999999999999888889898899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 197 QLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSG 276 (782)
Q Consensus 197 ~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~~ 276 (782)
.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 164 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 243 (587)
T 3qf4_A 164 KLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAF 243 (587)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003976 277 VAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKEN 356 (782)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~ 356 (782)
...+...++..++..+..++++|+|++++.+|.+++|.+++++.+......|+..+...+..++++.++++|+.++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 323 (587)
T 3qf4_A 244 SLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEK 323 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888888888899999999999999999999999888888888899999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEE
Q 003976 357 SHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436 (782)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~ 436 (782)
++..+. ......++..+.|+++||+|+|+++..++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 324 ~~~~~~--~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 401 (587)
T 3qf4_A 324 PAIEEA--DNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401 (587)
T ss_dssp CSCCCC--TTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE
T ss_pred CccCCC--CCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Confidence 654221 112222345678999999999986555699999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCC
Q 003976 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS 516 (782)
Q Consensus 437 i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LS 516 (782)
+||+|+++++.+++|++|+||||+|++|++||+|||.+|.++.++++++++++.+++++++.++|+|+||.+|++|.+||
T Consensus 402 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LS 481 (587)
T 3qf4_A 402 VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481 (587)
T ss_dssp ESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSC
T ss_pred ECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcC
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecCh
Q 003976 517 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 517 gGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~ 596 (782)
||||||++||||+++||+|||||||||+||+++|+.+++.|+++.+|+|+|+||||+++++.||+|+||++|+|+|+|+|
T Consensus 482 gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 561 (587)
T 3qf4_A 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTH 561 (587)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred hHHhhcCchhHHHHHhhh
Q 003976 597 VDLISKGGEYAALVNLQS 614 (782)
Q Consensus 597 ~eL~~~~~~y~~l~~~~~ 614 (782)
+||+++++.|+++++.|.
T Consensus 562 ~el~~~~~~~~~~~~~~~ 579 (587)
T 3qf4_A 562 KELLEHCKPYREIYESQF 579 (587)
T ss_dssp HHHHHHCHHHHHHHHHHC
T ss_pred HHHHhCCcHHHHHHHHHh
Confidence 999999999999998774
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4e-96 Score=858.67 Aligned_cols=573 Identities=28% Similarity=0.401 Sum_probs=515.9
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCC--chhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003976 37 FLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSH--PHRLTSRISEHALYLVYLGLVALVSAWI 114 (782)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~--~~~~~~~~~~~~l~~~~l~i~~~~~~~~ 114 (782)
++++++|.+++ +..++++++++++.+++.++.|+++++++|.+...... ..........+++.++++.++..++.++
T Consensus 2 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 2 IKRYLQFVKPY-KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHHGGG-HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888776 44566778888888888888999999999987532210 0111111123344444555666778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS 194 (782)
Q Consensus 115 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~ 194 (782)
+.++..+.+.++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+...+..++.+++.+++++++++++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 599999999999999999999888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 003976 195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK 274 (782)
Q Consensus 195 ~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k 274 (782)
+|++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003976 275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK 354 (782)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~ 354 (782)
.....+...++..++..+..++++|+|++++.+|.+|+|++++++.+......|+..+...+..++++.++++|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998888888888888888999999999999999999999998887777778999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccE
Q 003976 355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434 (782)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~ 434 (782)
.+++..+. ......+...++|+++||+|+|+++..++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 320 ~~~~~~~~--~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNG--VGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCC--TTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCC--CCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 87654211 1112223446789999999999865456999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCC
Q 003976 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514 (782)
Q Consensus 435 I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~ 514 (782)
|.+||+|+++++.+++|++||||||+|++|++||+|||.+|.++.+++++.++++.+++++++.++|+|+||.+||+|.+
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEec
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G 594 (782)
||||||||++||||++++|+|||||||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|+++|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred ChhHHhhcCchhHHHHHhh
Q 003976 595 THVDLISKGGEYAALVNLQ 613 (782)
Q Consensus 595 ~~~eL~~~~~~y~~l~~~~ 613 (782)
+|+||++.++.|+++++.|
T Consensus 558 ~~~el~~~~~~~~~~~~~q 576 (578)
T 4a82_A 558 THRELIAKQGAYEHLYSIQ 576 (578)
T ss_dssp CHHHHHHTTSHHHHHHTTT
T ss_pred CHHHHHhCCcHHHHHHHhh
Confidence 9999999999999999766
No 6
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1e-95 Score=858.12 Aligned_cols=572 Identities=27% Similarity=0.418 Sum_probs=521.5
Q ss_pred ccchHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 003976 33 QSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSA 112 (782)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~ 112 (782)
.+..++++++|.+++ +..++++++++++.+++.+..|++++.++|.+.... + ...+..+++.++++.++..++.
T Consensus 21 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~ 94 (598)
T 3qf4_B 21 PTATLRRLLGYLRPH-TFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPR-R----FDLLPRYMLILGTIYALTSLLF 94 (598)
T ss_dssp HHHHHHHHGGGTGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-C----GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C----HHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899988775 556677788888888889999999999999875321 1 1233345555666667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 113 WIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGF 192 (782)
Q Consensus 113 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~ 192 (782)
+++.++....+.++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+...+..++.+++.+++++++++
T Consensus 95 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 173 (598)
T 3qf4_B 95 WLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR-TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMF 173 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHH-SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 003976 193 TSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQG 272 (782)
Q Consensus 193 ~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~ 272 (782)
+++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||+|+.+.++|.+..++..+..
T Consensus 174 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 253 (598)
T 3qf4_B 174 RVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVG 253 (598)
T ss_dssp HHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 273 KKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 352 (782)
Q Consensus 273 ~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~ 352 (782)
.+.....+...++..++..+..++++|+|++++.+|.+|+|.+++++.+......|+..+...+..++++.++++|+.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~ 333 (598)
T 3qf4_B 254 TKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEI 333 (598)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888888888889999999999999999999998887777667788999999999999999999999999
Q ss_pred HhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCc
Q 003976 353 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432 (782)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~ 432 (782)
++.+++. +. +.....++..|+|+++||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++
T Consensus 334 l~~~~~~-~~--~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 409 (598)
T 3qf4_B 334 LDLEEEK-DD--PDAVELREVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409 (598)
T ss_dssp TTSCCCC-CC--SSCCCCCSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSE
T ss_pred HcCCCCC-CC--CCCCCCCCCCCeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCC
Confidence 9887654 21 1122233456789999999999743 359999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCC
Q 003976 433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512 (782)
Q Consensus 433 G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G 512 (782)
|+|.+||+|+++++.+++|++||||||+|++|++||+|||.+|.++.++++++++++.++++++++.+|+|+||.+||+|
T Consensus 410 G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g 489 (598)
T 3qf4_B 410 GQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNG 489 (598)
T ss_dssp EEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHH
T ss_pred eEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCC
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEE
Q 003976 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 592 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive 592 (782)
.+||||||||++||||++++|+|||||||||+||+++++.+++.|+++.+|+|+|+||||+++++.||+|++|++|+|++
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 569 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVE 569 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred ecChhHHhhcCchhHHHHHhhhc
Q 003976 593 SGTHVDLISKGGEYAALVNLQSS 615 (782)
Q Consensus 593 ~G~~~eL~~~~~~y~~l~~~~~~ 615 (782)
+|+|+||++++|.|++++..|..
T Consensus 570 ~g~~~~l~~~~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 570 MGKHDELIQKRGFYYELFTSQYG 592 (598)
T ss_dssp CSCHHHHHHTTCHHHHHHHHHHG
T ss_pred ECCHHHHHhCCCHHHHHHHHHhh
Confidence 99999999999999999987754
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.3e-93 Score=836.33 Aligned_cols=569 Identities=27% Similarity=0.419 Sum_probs=514.1
Q ss_pred chHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003976 35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI 114 (782)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~ 114 (782)
..+++++++.+++ +..++++++++++.+++.++.|+++++++|.+.... + ...+...++.+++++++..++.++
T Consensus 11 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~ 84 (582)
T 3b5x_A 11 QTFKRLWTYIRLY-KAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNA-E----SNFLRILPFMILGLMFVRGLSGFA 84 (582)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-c----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788877665 445566777888888888889999999999864311 1 112222233345556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS 194 (782)
Q Consensus 115 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~ 194 (782)
..++..+.+.++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+...+..++.+++++++++++++++
T Consensus 85 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 163 (582)
T 3b5x_A 85 SSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ-ESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWN 163 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 003976 195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK 274 (782)
Q Consensus 195 ~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k 274 (782)
+|++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+
T Consensus 164 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 243 (582)
T 3b5x_A 164 SWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK 243 (582)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003976 275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK 354 (782)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~ 354 (782)
.....+...++..++..+..++++|+|++++.+|.+|+|++++++.++.....|+..+...+..++++..+++|+.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~ 323 (582)
T 3b5x_A 244 LVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMD 323 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998888888888888888999999999999999999999999888888888999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccE
Q 003976 355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434 (782)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~ 434 (782)
.+++. +. ...+.++..+.|+++||+|+|++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 324 ~~~~~-~~---~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 399 (582)
T 3b5x_A 324 LETER-DN---GKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS 399 (582)
T ss_pred CCCcC-CC---CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence 76543 11 111122335789999999999754345999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCC-CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCC
Q 003976 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513 (782)
Q Consensus 435 I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~-~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~ 513 (782)
|.+||+|+++++.+++|++||||||+|++|++|++|||.+|. ++.++++++++++.++++++++++|+||||.+|++|.
T Consensus 400 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~ 479 (582)
T 3b5x_A 400 ICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGT 479 (582)
T ss_pred EEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCC
Confidence 999999999999999999999999999999999999999997 6778999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEe
Q 003976 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 593 (782)
Q Consensus 514 ~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~ 593 (782)
+||||||||++||||+++||+|||||||||+||+++++.+++.|+++.+|+|+|+||||+++++.||+|++|++|+|+++
T Consensus 480 ~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIER 559 (582)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCchhHHHHHhhh
Q 003976 594 GTHVDLISKGGEYAALVNLQS 614 (782)
Q Consensus 594 G~~~eL~~~~~~y~~l~~~~~ 614 (782)
|+|+||++.++.|+++++.|.
T Consensus 560 g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 560 GRHADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred CCHHHHHhCCcHHHHHHHHhh
Confidence 999999999999999998763
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.6e-93 Score=833.82 Aligned_cols=569 Identities=30% Similarity=0.448 Sum_probs=513.8
Q ss_pred chHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003976 35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI 114 (782)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~ 114 (782)
..+++++++.+++ +..++++++++++.+++.+..|+++++++|.+.... . ...+...++.+++++++..++.++
T Consensus 11 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~ 84 (582)
T 3b60_A 11 QTFRRLWPTIAPF-KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT----D-RSVLLWMPLVVIGLMILRGITSYI 84 (582)
T ss_dssp HHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST----T-HHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----c-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788887765 445566777888888888888999999999764211 1 122222233345556667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS 194 (782)
Q Consensus 115 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~ 194 (782)
..++..+.+.++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+...+..++.+++++++++++++++
T Consensus 85 ~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 163 (582)
T 3b60_A 85 SSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY 163 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 003976 195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK 274 (782)
Q Consensus 195 ~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k 274 (782)
+|++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|.+..++..+...+
T Consensus 164 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 243 (582)
T 3b60_A 164 SWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMK 243 (582)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003976 275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK 354 (782)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~ 354 (782)
.....+...++..++..+..++++|+|++++.+|.+|+|++++++.+......|+..+...+..++++..+++|+.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~ 323 (582)
T 3b60_A 244 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD 323 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988888888888888888899999999999999999999999888888888999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccE
Q 003976 355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434 (782)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~ 434 (782)
.+++. +. ...+.++..+.|+++||+|+|++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 324 ~~~~~-~~---~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 399 (582)
T 3b60_A 324 SEQEK-DE---GKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 399 (582)
T ss_dssp SCCSC-CC---CCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE
T ss_pred CCCCc-cC---CCCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCe
Confidence 76653 11 111222345789999999999743245999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCC-CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCC
Q 003976 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513 (782)
Q Consensus 435 I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~-~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~ 513 (782)
|.+||+|+++++.+++|++|+||||+|++|++|++|||.+|. ++.++++++++++.++++++++++|+|+||.+||+|.
T Consensus 400 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~ 479 (582)
T 3b60_A 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGV 479 (582)
T ss_dssp EEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSC
T ss_pred EEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCC
Confidence 999999999999999999999999999999999999999997 6778999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEe
Q 003976 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 593 (782)
Q Consensus 514 ~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~ 593 (782)
+||||||||++||||++++|+|||||||||+||+++++.+++.|+++.+|+|+|+||||+++++.||+|++|++|+|+++
T Consensus 480 ~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559 (582)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCchhHHHHHhhh
Q 003976 594 GTHVDLISKGGEYAALVNLQS 614 (782)
Q Consensus 594 G~~~eL~~~~~~y~~l~~~~~ 614 (782)
|+|+||++.++.|+++++.|.
T Consensus 560 g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b60_A 560 GTHSELLAQHGVYAQLHKMQF 580 (582)
T ss_dssp ECHHHHHHHTSSHHHHHHHTC
T ss_pred cCHHHHHHcCCHHHHHHHHhc
Confidence 999999999999999998763
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=6.7e-93 Score=834.48 Aligned_cols=573 Identities=34% Similarity=0.519 Sum_probs=498.0
Q ss_pred hHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 36 SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIG 115 (782)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~ 115 (782)
.+++++++.+++ +..++++++++++.+++.++.|++++.++|.+.... .......+..+++.++++.++..++.+++
T Consensus 6 ~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (595)
T 2yl4_A 6 EARKLLGLAYPE-RRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNP--TVDYSDNLTRLCLGLSAVFLCGAAANAIR 82 (595)
T ss_dssp HHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCT--TSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777665 445566777777888888888889999999864321 00111122233344445556667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 116 VAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSV 195 (782)
Q Consensus 116 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~~~~ 195 (782)
.++..+.+.++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+...+..++.+++.++++++++++++
T Consensus 83 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 161 (595)
T 2yl4_A 83 VYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDK-TRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVS 161 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH-SCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 003976 196 WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKS 275 (782)
Q Consensus 196 w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~k~ 275 (782)
|++++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|.+..++..+...+.
T Consensus 162 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 241 (595)
T 2yl4_A 162 PNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKE 241 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003976 276 GVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKE 355 (782)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~ 355 (782)
....+...++..++..+..++++|+|++++.+|.+|+|++++++.+......|+..+...+..++++..+++|+.++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~ 321 (595)
T 2yl4_A 242 AFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLER 321 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888888899999999999999999999988888888889999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCcCc-EEEEeEEEEcCCCC-CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc
Q 003976 356 NSHSSERPGDDGITLPKLAGQ-IEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433 (782)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~g~-i~~~~v~f~y~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G 433 (782)
+++..+. .....+++..++ |+++||+|+|++++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|
T Consensus 322 ~~~~~~~--~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 399 (595)
T 2yl4_A 322 EPKLPFN--EGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 399 (595)
T ss_dssp CCSSCSS--CSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEE
T ss_pred CCccCCC--CCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 6654111 111111234577 99999999998653 3599999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCC---CCHHHHHHHHHHhhhHhHHhcCCCCccccccC
Q 003976 434 KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED---ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE 510 (782)
Q Consensus 434 ~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~---~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge 510 (782)
+|.+||+|+++++.+++|++|+||+|+|++|++||+|||.+|.+. .++++++++++.++++++++++|+|+||.+|+
T Consensus 400 ~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~ 479 (595)
T 2yl4_A 400 TISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE 479 (595)
T ss_dssp EEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSS
T ss_pred EEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccC
Confidence 999999999999999999999999999999999999999999875 68899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEE
Q 003976 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 590 (782)
Q Consensus 511 ~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~i 590 (782)
+|.+||||||||++||||++++|+|||||||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|
T Consensus 480 ~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i 559 (595)
T 2yl4_A 480 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKI 559 (595)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEE
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred EEecChhHHhhc-CchhHHHHHhhh
Q 003976 591 VESGTHVDLISK-GGEYAALVNLQS 614 (782)
Q Consensus 591 ve~G~~~eL~~~-~~~y~~l~~~~~ 614 (782)
+++|+|+||+++ ++.|+++++.|.
T Consensus 560 ~~~g~~~~l~~~~~~~~~~~~~~q~ 584 (595)
T 2yl4_A 560 TEYGKHEELLSKPNGIYRKLMNKQS 584 (595)
T ss_dssp EEEECSCC------C----------
T ss_pred EEECCHHHHHhCCChHHHHHHHHhh
Confidence 999999999984 899999987664
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.2e-89 Score=861.61 Aligned_cols=580 Identities=36% Similarity=0.608 Sum_probs=521.8
Q ss_pred cchHHHHHhhcChhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003976 34 SGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAW 113 (782)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~id~~~~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~ 113 (782)
...+++++++.++. +.+++++++++++.+++.|.++++++.+++.+.... ...........+++++++++++..++.+
T Consensus 690 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 767 (1284)
T 3g5u_A 690 PASFWRILKLNSTE-WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGG-PPETQRQNSNLFSLLFLILGIISFITFF 767 (1284)
T ss_dssp CCCTTHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777776554 456678888999999999999999999999875322 1112233344566677777788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 114 IGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDT-EARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGF 192 (782)
Q Consensus 114 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~-~~~~G~l~srl~~D~~~i~~~i~~~~~~~i~~~~~~i~~~~~~~ 192 (782)
++.+++.+.++++..++|.++|++++++|++|||. ++++|++++|+++|++.+++.++..+..++..++.+++++++++
T Consensus 768 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~ 847 (1284)
T 3g5u_A 768 LQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISL 847 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999995 14899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 003976 193 TSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQG 272 (782)
Q Consensus 193 ~~~w~L~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~ 272 (782)
+++|++++++++++|+++++..+..+..++...+.++..++.+..+.|+++|+++||+|+.|+.+.++|.+..+...+..
T Consensus 848 ~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~ 927 (1284)
T 3g5u_A 848 IYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNA 927 (1284)
T ss_dssp SSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 273 KKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI 352 (782)
Q Consensus 273 ~k~~~~~~~~~~~~~~~~~~~~~~~l~~G~~lv~~g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~ 352 (782)
.+.....+...++...+.++.+++++|+|++++..|.+++|.++.++.++.....++..+......++++..+++|+.++
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 1007 (1284)
T 3g5u_A 928 MKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRI 1007 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999989999999999999999999999999999999998887777777777888777778889999999999999
Q ss_pred HhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCC-cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC
Q 003976 353 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 431 (782)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~-~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~ 431 (782)
++.+|+. +.....+..+....|.|+|+||+|+||++++ ++|+|+||+|++||++|||||||||||||+++|.|+|+|+
T Consensus 1008 l~~~~~~-~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~ 1086 (1284)
T 3g5u_A 1008 IEKTPEI-DSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM 1086 (1284)
T ss_dssp HHSCCSS-SSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS
T ss_pred HcCCCcc-cccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 9987765 2212222233345689999999999987543 4999999999999999999999999999999999999999
Q ss_pred ccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHhHHhcCCCCcccccc
Q 003976 432 SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 509 (782)
Q Consensus 432 ~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~--~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vg 509 (782)
+|+|.+||+|+++++.+++|++|+||||||.+|++||+|||.+|.+. .++++++++++.+++++++.++|+||||.||
T Consensus 1087 ~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vg 1166 (1284)
T 3g5u_A 1087 AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166 (1284)
T ss_dssp EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCS
T ss_pred CCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccC
Confidence 99999999999999999999999999999999999999999999763 6899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCE
Q 003976 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 589 (782)
Q Consensus 510 e~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ 589 (782)
|+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+|+|+|+||||+++++.||+|+||++|+
T Consensus 1167 e~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~ 1246 (1284)
T 3g5u_A 1167 DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGK 1246 (1284)
T ss_dssp TTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBE
T ss_pred CCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred EEEecChhHHhhcCchhHHHHHhhhcc
Q 003976 590 VVESGTHVDLISKGGEYAALVNLQSSE 616 (782)
Q Consensus 590 ive~G~~~eL~~~~~~y~~l~~~~~~~ 616 (782)
|+|+|+|+||++++|.|++|++.|...
T Consensus 1247 i~~~g~~~~l~~~~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1247 VKEHGTHQQLLAQKGIYFSMVSVQAGA 1273 (1284)
T ss_dssp EEEEECHHHHHHSCSHHHHHHHHHC--
T ss_pred EEEECCHHHHHhCCCHHHHHHHHHhhc
Confidence 999999999999999999999887543
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.7e-69 Score=579.65 Aligned_cols=279 Identities=44% Similarity=0.686 Sum_probs=254.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCC
Q 003976 334 PNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPS 413 (782)
Q Consensus 334 ~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~s 413 (782)
+....++++.++++|++++++.+++..+. ..........+.|+|+||+|+|++. .++|+|+||+|++||++||||||
T Consensus 13 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~s 89 (306)
T 3nh6_A 13 GLVPRGSHMFIDMENMFDLLKEETEVKDL--PGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPS 89 (306)
T ss_dssp ------CCTTCCHHHHHHHHHHHHSCCCC--TTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSS
T ss_pred ccchhHHHHHHHHHHHHHHHhCCcccccc--ccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCC
Confidence 35567888999999999999987765221 1112223345789999999999743 35999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhh
Q 003976 414 GSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANA 493 (782)
Q Consensus 414 GsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~ 493 (782)
|||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+|+||++||+|||.||.+..++++++++++.+++
T Consensus 90 GsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l 169 (306)
T 3nh6_A 90 GAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169 (306)
T ss_dssp CHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 003976 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573 (782)
Q Consensus 494 ~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl 573 (782)
++++..+|+||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.+++.|++.|+++.+++|+|+||||+
T Consensus 170 ~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l 249 (306)
T 3nh6_A 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL 249 (306)
T ss_dssp HHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSH
T ss_pred HHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred chhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHHhhhc
Q 003976 574 STVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS 615 (782)
Q Consensus 574 ~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~~~~~ 615 (782)
+++..||+|+||++|+|++.|+|+||++.++.|+++++.|..
T Consensus 250 ~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 250 STVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQG 291 (306)
T ss_dssp HHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHC
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988754
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.9e-57 Score=476.04 Aligned_cols=239 Identities=48% Similarity=0.799 Sum_probs=225.6
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
.+|+++||+|+|++....+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+++...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 47999999999953223599999999999999999999999999999999999999999999999999999989999999
Q ss_pred eEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc
Q 003976 455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534 (782)
Q Consensus 455 ~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ 534 (782)
|||+|+|.+|+.|++|||.++.+..+++++.++++.+++.+++..+|+|+++.+++++.+||||||||++|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876567888999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhc-CchhHHHHHhh
Q 003976 535 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQ 613 (782)
Q Consensus 535 illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~-~~~y~~l~~~~ 613 (782)
+||||||||+||+.+++.+.+.|+++.+|+|+|+|||+++.++.||+|++|++|++++.|+++|+.+. .+.|.+++..+
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~~ 245 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHhh
Confidence 99999999999999999999999998789999999999999988999999999999999999999987 78899888654
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.1e-56 Score=470.33 Aligned_cols=239 Identities=45% Similarity=0.778 Sum_probs=225.2
Q ss_pred CcEEEEeEEEEcCCCC-CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhH
Q 003976 375 GQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~-~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~ 453 (782)
+.|+++||+|+|+++. .++|+|+||+|++|+++||+||||||||||+++|+|+++| +|+|.+||+|+.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 4699999999997542 3499999999999999999999999999999999999997 8999999999999998899999
Q ss_pred ceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 454 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 454 i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
|+||+|+|.+|+.|++|||.++.+..+++++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999986555678889999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHHhh
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~~~ 613 (782)
+|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|+++++++..+.|.+++..+
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 254 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHhh
Confidence 99999999999999999999999999888899999999999998899999999999999999999998888999988766
Q ss_pred h
Q 003976 614 S 614 (782)
Q Consensus 614 ~ 614 (782)
.
T Consensus 255 ~ 255 (260)
T 2ghi_A 255 S 255 (260)
T ss_dssp H
T ss_pred h
Confidence 4
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.4e-55 Score=467.93 Aligned_cols=240 Identities=44% Similarity=0.761 Sum_probs=223.1
Q ss_pred cCcEEEEeEEEEcCCC-CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHh
Q 003976 374 AGQIEFSEVCFAYPSR-PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~ 452 (782)
.+.|+++||+|+|+++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.|+.+++...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 4579999999999752 234999999999999999999999999999999999999999999999999999988889999
Q ss_pred HceEEeccCCCccccHHHHHhcCCCCCCH-HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 453 QMGLVSQEPALFATSIANNILLGKEDASM-DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 453 ~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~-~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
+|+||+|+|.+|+.|++|||.++.+.... +++.++++.+++.+++..+|+|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998654444 67788888899999999999999999999999999999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHH
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAAL 609 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l 609 (782)
+|+|||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|.++
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 253 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHH
Confidence 9999999999999999999999999998854 89999999999999889999999999999999999999888999998
Q ss_pred HHhh
Q 003976 610 VNLQ 613 (782)
Q Consensus 610 ~~~~ 613 (782)
+..+
T Consensus 254 ~~~~ 257 (271)
T 2ixe_A 254 VEAL 257 (271)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 8755
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-56 Score=468.01 Aligned_cols=236 Identities=45% Similarity=0.749 Sum_probs=222.1
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+|+|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++|+|
T Consensus 2 l~~~~l~~~y~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCC-CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 789999999952 2349999999999999999999999999999999999999999999999999998887788999999
Q ss_pred EeccCCCccccHHHHHhcC-CCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCce
Q 003976 457 VSQEPALFATSIANNILLG-KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 535 (782)
Q Consensus 457 V~Q~~~lf~~Ti~eNi~~g-~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~i 535 (782)
|+|+|.+|+.|++|||.++ .+..+++++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998 455677889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHHhh
Q 003976 536 LLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613 (782)
Q Consensus 536 llLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~~~ 613 (782)
||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+++++.+..+.|.+++..+
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 238 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHHHhh
Confidence 999999999999999999999998878999999999999998899999999999999999999998888888888654
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-53 Score=470.15 Aligned_cols=228 Identities=29% Similarity=0.495 Sum_probs=216.3
Q ss_pred cCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhH
Q 003976 374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~ 453 (782)
.+.|+++||+|+|+.....+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+|+.+++.+.+|++
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 46799999999997444459999999999999999999999999999999999998 99999999999999999999999
Q ss_pred ceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 454 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 454 i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
||||+|++.||+.|++||+.+... ..++++.++++.+++.+++.+.|.+++|.++++|.+||||||||+||||||+++|
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~~-~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P 174 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNAA-HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 174 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTCC-SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCcccCccCHHHHhhhccc-cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986543 5688999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 534 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 534 ~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
+|||||||||+||+.++..+++.|+++.+++|+|+|||+++.+..||+|+||++|+|++.|+++|+.+..
T Consensus 175 ~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 175 KILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp CEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999887899999999999999999999999999999999999999863
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1e-52 Score=437.59 Aligned_cols=226 Identities=30% Similarity=0.498 Sum_probs=207.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+|+|+....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999964334599999999999999999999999999999999999999999999999 499
Q ss_pred EEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCce
Q 003976 456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 535 (782)
Q Consensus 456 ~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~i 535 (782)
||+|+|.+|+.|++|||.++.+ ...++..++.+.+++.+++..+|.|++|.+++++.+||||||||++|||||+++|+|
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 148 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 148 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999864 334556777888888889999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHH---HHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHHh
Q 003976 536 LLLDEATSALDAESELIVQRALE---KIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL 612 (782)
Q Consensus 536 llLDE~tsalD~~~e~~i~~~l~---~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~~ 612 (782)
||||||||+||+.+++.+.+.|. ++.+++|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|.+++..
T Consensus 149 llLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 228 (237)
T 2cbz_A 149 YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRT 228 (237)
T ss_dssp EEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHH
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHHH
Confidence 99999999999999999999984 444689999999999999889999999999999999999999999999999877
Q ss_pred hhc
Q 003976 613 QSS 615 (782)
Q Consensus 613 ~~~ 615 (782)
|..
T Consensus 229 ~~~ 231 (237)
T 2cbz_A 229 YAS 231 (237)
T ss_dssp TCC
T ss_pred HHh
Confidence 654
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.4e-52 Score=432.79 Aligned_cols=222 Identities=27% Similarity=0.471 Sum_probs=201.4
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
+.|+++||+|+|+.+..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999974334599999999999999999999999999999999999999999999999 49
Q ss_pred eEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc
Q 003976 455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534 (782)
Q Consensus 455 ~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ 534 (782)
+||+|+|.+|++|++|||.++.+ ..+.++.++++.+++.+++..+|.+++|.+++++.+||||||||++|||||+++|+
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999864 34555677788889999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHH-HHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHH
Q 003976 535 ILLLDEATSALDAESELIVQRA-LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALV 610 (782)
Q Consensus 535 illLDE~tsalD~~~e~~i~~~-l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~ 610 (782)
+||||||||+||+.+++.+.+. +++..+++|+|+|||+++.++.||+|++|++|++++.|+++++.+..+.|.+++
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 227 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHHHH
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHh
Confidence 9999999999999999999987 455556899999999999998899999999999999999999988766776654
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=9.3e-50 Score=423.40 Aligned_cols=220 Identities=28% Similarity=0.471 Sum_probs=188.4
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC--CcCHHHHHhH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK--SLQLKWLREQ 453 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~--~~~~~~lR~~ 453 (782)
-|+++||+|+|+++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+. +.+...+|++
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 48999999999743 24999999999999999999999999999999999999999999999999994 4456678999
Q ss_pred ceEEeccC--CCccccHHHHHhcCCCC--CCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHH
Q 003976 454 MGLVSQEP--ALFATSIANNILLGKED--ASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 454 i~~V~Q~~--~lf~~Ti~eNi~~g~~~--~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiai 525 (782)
||||+|+| .+|..|++||+.++... .+.+ ++.++++..++.+ .......+||||||||++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCCcccCCHHHHHHHHH
Confidence 99999998 57888999999987421 2333 3444555544433 3345567899999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+|++.|+++|++..
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998875 38999999999999865 999999999999999999999876
Q ss_pred CchhH
Q 003976 603 GGEYA 607 (782)
Q Consensus 603 ~~~y~ 607 (782)
...+.
T Consensus 235 ~~~~~ 239 (275)
T 3gfo_A 235 KEVIR 239 (275)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-49 Score=413.58 Aligned_cols=219 Identities=23% Similarity=0.425 Sum_probs=188.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH-HhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l-R~~i 454 (782)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ |++|
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 3899999999964 349999999999999999999999999999999999999999999999999998887655 4569
Q ss_pred eEEeccCCCccc-cHHHHHhcCC-CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 455 GLVSQEPALFAT-SIANNILLGK-EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~-~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
+||+|+|.+|.. |++||+.++. +..+.++..+.+ .+.++.++ |++...+....+||||||||++|||||+++
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999999987 9999999974 222222222222 23344443 355556777889999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+ +.||+|++|++|++++.|+++++.+.
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 99999999999999999999999999875 689999999999876 55999999999999999999998753
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.1e-49 Score=433.36 Aligned_cols=217 Identities=33% Similarity=0.512 Sum_probs=189.7
Q ss_pred CcEEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH---
Q 003976 375 GQIEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW--- 449 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~--- 449 (782)
.-|+++||+++|+.+. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|+|+..++.+.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999997532 23999999999999999999999999999999999999999999999999999998765
Q ss_pred HHhHceEEeccCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 450 LREQMGLVSQEPALFAT-SIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
+|++||||+|++.+|.. |++||+.++.. ..+. +++.++++..++.++. .....+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT-----------TCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHH
Confidence 47889999999999976 99999998632 1222 3455566666555443 34456899999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL 599 (782)
++|||||+.+|+|||||||||+||+.+++.+.+.|+++. .|+|+|+|||+++.+.. ||+|+||++|+|+++|+++|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999874 38999999999999865 999999999999999999999
Q ss_pred hhc
Q 003976 600 ISK 602 (782)
Q Consensus 600 ~~~ 602 (782)
...
T Consensus 252 ~~~ 254 (366)
T 3tui_C 252 FSH 254 (366)
T ss_dssp HSS
T ss_pred HhC
Confidence 876
No 22
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.6e-49 Score=412.96 Aligned_cols=214 Identities=31% Similarity=0.465 Sum_probs=180.6
Q ss_pred EEEEeEEEEcCCCC--CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHH----
Q 003976 377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL---- 450 (782)
Q Consensus 377 i~~~~v~f~y~~~~--~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~l---- 450 (782)
|+++||+|+|+.+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997543 249999999999999999999999999999999999999999999999999999987664
Q ss_pred HhHceEEeccCCCccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 451 REQMGLVSQEPALFAT-SIANNILLGKE-----DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 451 R~~i~~V~Q~~~lf~~-Ti~eNi~~g~~-----~~~~~----~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
|++||||+|+|.+|.. |++||+.++.. ....+ ++.++++..++.+. .......+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh----------hhhCChhhCCHHHH
Confidence 4579999999999987 99999987521 12222 23334444333221 12455678999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhH
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~e 598 (782)
||++|||||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++..+.||+|++|++|+|++.|+.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999998753 899999999999888899999999999999998777
Q ss_pred Hh
Q 003976 599 LI 600 (782)
Q Consensus 599 L~ 600 (782)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 54
No 23
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.3e-48 Score=412.23 Aligned_cols=215 Identities=33% Similarity=0.493 Sum_probs=186.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC--CcCHHHHHhH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK--SLQLKWLREQ 453 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~--~~~~~~lR~~ 453 (782)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4999999999963 34999999999999999999999999999999999999999999999999985 3456678899
Q ss_pred ceEEeccCCCccc-cHHHHHhcCC---CCCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHH
Q 003976 454 MGLVSQEPALFAT-SIANNILLGK---EDAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525 (782)
Q Consensus 454 i~~V~Q~~~lf~~-Ti~eNi~~g~---~~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiai 525 (782)
||||+|++.+|.. |++||+.++. ...+ ++++.++++..++.++ ......+||||||||++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK-----------AHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCChhhCCHHHHHHHHH
Confidence 9999999999987 9999999852 1122 2334455555554433 344567899999999999
Q ss_pred HHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 526 ARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|+|++.|+++++.+..
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999999998874 4899999999999986 49999999999999999999998653
No 24
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1e-48 Score=418.56 Aligned_cols=238 Identities=26% Similarity=0.445 Sum_probs=188.3
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC
Q 003976 348 NIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 348 ri~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
|+.++++.+.+. .. . .......+.|+++||+|.| .++|+|+||+|++|+++||+||||||||||+++|+|+
T Consensus 17 ~~~~~~~~~~~~--~~-~--~~~~~~~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 17 GFGELFEKAKQN--NN-N--RKTSNGDDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp HHHHHHHHCC----------------------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred HHHHHhcccccc--cc-c--ccccCCCceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 666777654432 11 1 1112234569999999964 2499999999999999999999999999999999999
Q ss_pred CCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCcccc
Q 003976 428 YEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 507 (782)
Q Consensus 428 ~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~ 507 (782)
++|++|+|.++| +|+||+|+|.+|++|++|||. +.. ..+.++.++++..++.+++..+|++++|.
T Consensus 88 ~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 88 LEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp SCEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccch
Confidence 999999999999 499999999999999999998 642 34455667778889999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHH-HHHhCCCeEEEEecCcchhhhcCEEEEEe
Q 003976 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL-EKIMSNRTTIVVAHRLSTVRDVDTIMVLK 586 (782)
Q Consensus 508 vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l-~~~~~~~T~i~iaHrl~~i~~aD~I~vl~ 586 (782)
+++++.+||||||||++|||||+++|++||||||||+||+.+++.+.+.+ +++.+++|+|+|||+++.++.||+|++|+
T Consensus 153 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~ 232 (290)
T 2bbs_A 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232 (290)
T ss_dssp C----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEE
T ss_pred hcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999864 45556899999999999998899999999
Q ss_pred CCEEEEecChhHHhhcCchhHHH
Q 003976 587 NGQVVESGTHVDLISKGGEYAAL 609 (782)
Q Consensus 587 ~G~ive~G~~~eL~~~~~~y~~l 609 (782)
+|++++.|+++++++....|.+.
T Consensus 233 ~G~i~~~g~~~~l~~~~~~~~~~ 255 (290)
T 2bbs_A 233 EGSSYFYGTFSELQNLRPDFSSK 255 (290)
T ss_dssp TTEEEEEECHHHHHHHCHHHHHH
T ss_pred CCeEEEeCCHHHHhhhcHHHHHH
Confidence 99999999999998655555443
No 25
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.7e-48 Score=410.80 Aligned_cols=214 Identities=27% Similarity=0.448 Sum_probs=188.7
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|+++.+++.+.+|+.++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5999999999964 34999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCC-ccccHHHHHhcCCCCC----CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 456 LVSQEPAL-FATSIANNILLGKEDA----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 456 ~V~Q~~~l-f~~Ti~eNi~~g~~~~----~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
||+|++.+ |+.|++||+.++.... ..+++.++++..++.++. .....+||||||||++|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA-----------QRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTT-----------TSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHh-----------cCCcccCCHHHHHHHHHHHHHh
Confidence 99999987 5679999999975322 234566666665554332 3344689999999999999999
Q ss_pred c------CCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 003976 531 R------NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 531 ~------~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
. +|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|++.
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999999999999999998753 579999999999986 599999999999999999999975
Q ss_pred c
Q 003976 602 K 602 (782)
Q Consensus 602 ~ 602 (782)
.
T Consensus 238 ~ 238 (266)
T 4g1u_C 238 A 238 (266)
T ss_dssp H
T ss_pred c
Confidence 4
No 26
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=5.8e-48 Score=406.72 Aligned_cols=215 Identities=21% Similarity=0.399 Sum_probs=184.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH-HHHHhHc
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQM 454 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~-~~lR~~i 454 (782)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+. +.+|++|
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 349999999999999999999999999999999999999999999999999988765 4567889
Q ss_pred eEEeccCCCcc-ccHHHHHhcCCCC---------------CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHH
Q 003976 455 GLVSQEPALFA-TSIANNILLGKED---------------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 518 (782)
Q Consensus 455 ~~V~Q~~~lf~-~Ti~eNi~~g~~~---------------~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgG 518 (782)
+||+|++.+|. .|++||+.++... ...++.. ..+.+.++.+ |++........+||||
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG 157 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSGG 157 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCHH
Confidence 99999999987 4999999987421 1111111 1123334444 5555666777899999
Q ss_pred HHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecCh
Q 003976 519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 519 QkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~ 596 (782)
||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999998874 4899999999999985 5999999999999999999
Q ss_pred hHH
Q 003976 597 VDL 599 (782)
Q Consensus 597 ~eL 599 (782)
+++
T Consensus 238 ~~~ 240 (257)
T 1g6h_A 238 EEE 240 (257)
T ss_dssp HHH
T ss_pred HHh
Confidence 993
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=7.7e-48 Score=407.68 Aligned_cols=213 Identities=33% Similarity=0.555 Sum_probs=187.9
Q ss_pred EEEEeEEEEcCCCC---CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhH
Q 003976 377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~---~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~ 453 (782)
|+++||+|+|+... .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 78999999996222 3499999999999999999999999999999999999999999999999998753 67889
Q ss_pred ceEEeccC--CCccccHHHHHhcCCCC-----CCHHHHHHHHHHhhhH--hHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 454 MGLVSQEP--ALFATSIANNILLGKED-----ASMDRVIEAAKAANAH--SFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 454 i~~V~Q~~--~lf~~Ti~eNi~~g~~~-----~~~~~i~~a~~~a~~~--~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
||||+|+| .+++.|++||+.++... ...+++.++++..++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999997 56788999999997421 2246678888888876 6654443 589999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
|||||+++|+|||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999874 58999999999999876 999999999999999999999765
Q ss_pred C
Q 003976 603 G 603 (782)
Q Consensus 603 ~ 603 (782)
.
T Consensus 229 ~ 229 (266)
T 2yz2_A 229 Y 229 (266)
T ss_dssp S
T ss_pred c
Confidence 3
No 28
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4e-48 Score=423.13 Aligned_cols=215 Identities=26% Similarity=0.458 Sum_probs=185.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC--cCHHHHHhH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWLREQ 453 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~--~~~~~lR~~ 453 (782)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++.+ .+....|++
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999964 349999999999999999999999999999999999999999999999999933 223345778
Q ss_pred ceEEeccCCCccc-cHHHHHhcCCCC--CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHH
Q 003976 454 MGLVSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526 (782)
Q Consensus 454 i~~V~Q~~~lf~~-Ti~eNi~~g~~~--~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiA 526 (782)
||||+|++.||.. |++|||.|+... .. .+++.++++..++.++.. ....+||||||||+|||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-----------RYPHELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-----------SCGGGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHHH
Confidence 9999999999975 999999998531 11 345666666666655443 44468999999999999
Q ss_pred HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 527 RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
|||+.+|++||||||||+||+.++..+++.|.++. .|+|+|+|||+++.+. .||||+||++|+|++.|+++|+....
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999999998776653 5899999999999875 49999999999999999999998763
No 29
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=5.4e-48 Score=398.76 Aligned_cols=208 Identities=26% Similarity=0.382 Sum_probs=178.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH---HH-
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---LR- 451 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~---lR- 451 (782)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+... +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 3899999999964 34999999999999999999999999999999999999999999999999998887543 44
Q ss_pred hHceEEeccCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 452 EQMGLVSQEPALFAT-SIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 452 ~~i~~V~Q~~~lf~~-Ti~eNi~~g~~--~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
++|+||+|++.+|.. |++||+.++.. ... .+++.++++..++ +........+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGL-----------GDKLSRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-----------TTCTTCCGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHH
Confidence 789999999999875 99999998632 111 2234444444443 33334456789999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCEEEEecCh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~ 596 (782)
|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.++.||+|++|++|+++++|+.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 9999999999999999999999999999999998874 58999999999998888999999999999999873
No 30
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.1e-48 Score=408.75 Aligned_cols=216 Identities=28% Similarity=0.477 Sum_probs=185.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC----------c
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS----------L 445 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~----------~ 445 (782)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 3899999999963 349999999999999999999999999999999999999999999999999862 4
Q ss_pred CH---HHHHhHceEEeccCCCccc-cHHHHHhcCC---CCCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCC
Q 003976 446 QL---KWLREQMGLVSQEPALFAT-SIANNILLGK---EDAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514 (782)
Q Consensus 446 ~~---~~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~---~~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~ 514 (782)
+. ..+|++||||+|++.+|.. |++||+.++. ...+ .+++.++++..++.+++ ......+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~ 153 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPVH 153 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGGG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCccc
Confidence 43 4568899999999999987 9999999852 1122 23455555555555441 3344568
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-hcCEEEEEeCCEEEE
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVE 592 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive 592 (782)
||||||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|+|++
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998874 4899999999999986 599999999999999
Q ss_pred ecChhHHhhcC
Q 003976 593 SGTHVDLISKG 603 (782)
Q Consensus 593 ~G~~~eL~~~~ 603 (782)
.|+++++....
T Consensus 234 ~g~~~~~~~~~ 244 (262)
T 1b0u_A 234 EGDPEQVFGNP 244 (262)
T ss_dssp EECHHHHHHSC
T ss_pred eCCHHHHHhCc
Confidence 99999998653
No 31
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.2e-48 Score=404.33 Aligned_cols=214 Identities=24% Similarity=0.424 Sum_probs=187.5
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ ....+|++|
T Consensus 14 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 56999999999963 349999999999999999999999999999999999999999999999999977 556788999
Q ss_pred eEEeccCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 455 GLVSQEPALFAT-SIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
|||+|+|.+|.. |++||+.++.. ..+. +++.++++..++.++. .....+||||||||++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-----------KDRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-----------GSBGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999987 99999988531 1222 3455666666554443 3445689999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
||+.+|+|||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999999999999875 58999999999999876 999999999999999999999753
No 32
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.3e-48 Score=425.62 Aligned_cols=213 Identities=31% Similarity=0.496 Sum_probs=186.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. ++.||
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 3499999999999999999999999999999999999999999999999999988765 46799
Q ss_pred EEeccCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~--~~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
||+|++.||.. |++|||.||.. ..+. +++.++++..++.++. .....+||||||||++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGT-----------TCCGGGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhHCCHHHHHHHHHHHH
Confidence 99999999976 99999999742 1222 3455566665554443 34456899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
|+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.+. -||+|+||++|+|++.|+++|+....
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 9999999999999999999999999999998743 899999999999875 49999999999999999999998763
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=8.2e-48 Score=409.70 Aligned_cols=214 Identities=22% Similarity=0.394 Sum_probs=183.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC--CcCHHHHHhH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK--SLQLKWLREQ 453 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~--~~~~~~lR~~ 453 (782)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|++
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 5999999999964 34999999999999999999999999999999999999999999999999998 7788888999
Q ss_pred ceEEeccCCC-ccc--cHHHHHhcCCCC-------CCH---HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 454 MGLVSQEPAL-FAT--SIANNILLGKED-------ASM---DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 454 i~~V~Q~~~l-f~~--Ti~eNi~~g~~~-------~~~---~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
||||+|++.+ |.. |++||+.++... ..+ +++.++++..++ +........+||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGqk 167 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM-----------SAKAQQYIGYLSTGEK 167 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC-----------GGGTTSBGGGSCHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC-----------hhHhcCChhhCCHHHH
Confidence 9999999875 554 999999987421 122 234444444443 3334455678999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCeE--EEEecCcchhh-hcCEEEEEeCCEEEEecCh
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTT--IVVAHRLSTVR-DVDTIMVLKNGQVVESGTH 596 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~-~~T~--i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~ 596 (782)
||++|||||+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+ |+|||+++.+. .||+|++|++|+|++.|++
T Consensus 168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 247 (279)
T 2ihy_A 168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247 (279)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999988753 8999 99999999985 5999999999999999999
Q ss_pred hHHhhc
Q 003976 597 VDLISK 602 (782)
Q Consensus 597 ~eL~~~ 602 (782)
+++.+.
T Consensus 248 ~~~~~~ 253 (279)
T 2ihy_A 248 EDILTS 253 (279)
T ss_dssp HHHCSH
T ss_pred HHHhcc
Confidence 998753
No 34
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-47 Score=417.15 Aligned_cols=213 Identities=31% Similarity=0.504 Sum_probs=187.9
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++.+++.. +++||
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 3899999999963 3499999999999999999999999999999999999999999999999999887754 67899
Q ss_pred EEeccCCCccc-cHHHHHhcCCCC--CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~--~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
||+|++.+|.. |++|||.|+... .+ ++++.++++..++.++..+. ..+||||||||+|||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK-----------PTQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 999999997532 11 34566777777766555443 36899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
|+++|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|+|++.|+++|+.+..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999988753 899999999999874 59999999999999999999998764
No 35
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2e-47 Score=419.18 Aligned_cols=213 Identities=36% Similarity=0.558 Sum_probs=185.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+++|.+ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++.+++.. +++||
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 3899999999963 3499999999999999999999999999999999999999999999999999887754 57899
Q ss_pred EEeccCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~--~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
||+|++.||.. |++|||.|+.. ..+ ++++.++++..++.++.. ....+||||||||+|||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN-----------RYPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-----------CCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999976 99999999732 122 234556666665544433 3446899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
|+++|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.+ ..||+|++|++|+|++.|+++|+....
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999998753 89999999999987 459999999999999999999998764
No 36
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.8e-47 Score=416.65 Aligned_cols=215 Identities=30% Similarity=0.498 Sum_probs=187.0
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
..|+++||+++|++ ...+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .|++|
T Consensus 13 ~~l~~~~l~~~y~g-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 89 (355)
T 1z47_A 13 MTIEFVGVEKIYPG-GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNV 89 (355)
T ss_dssp EEEEEEEEEECCTT-STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSE
T ss_pred ceEEEEEEEEEEcC-CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcE
Confidence 36999999999942 2349999999999999999999999999999999999999999999999999987654 47789
Q ss_pred eEEeccCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 455 GLVSQEPALFAT-SIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~--~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
|||+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++..+ ...+||||||||+||||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-----------~~~~LSGGq~QRvalAr 158 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANR-----------FPHELSGGQQQRVALAR 158 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHHHH
Confidence 999999999985 99999999732 112 3456666666666555433 34689999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|+++|+....
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999988753 8999999999998754 9999999999999999999998763
No 37
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=5.6e-47 Score=396.79 Aligned_cols=207 Identities=24% Similarity=0.392 Sum_probs=187.5
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+|+ ++|+|+||+|++||+++|+||||||||||+++|.|+++|+ |+|.++|.++.+++...+|++|+|
T Consensus 5 l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 5 MQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 899999986 3999999999999999999999999999999999999999 999999999999998999999999
Q ss_pred EeccCCCccc-cHHHHHhcCCC-CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc
Q 003976 457 VSQEPALFAT-SIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~-~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ 534 (782)
|+|++.+|.. |++||+.++.. ..+++++.++++..++.++. .....+||||||||++|||||+++|+
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~lAraL~~~p~ 146 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAVVLQITP 146 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGT-----------TSBGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred ECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999998876 99999999752 22366677777777665543 34567899999999999999999999
Q ss_pred -------eEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhh
Q 003976 535 -------ILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 535 -------illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
+||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+ +.||+|++|++|++++.|+++++.+
T Consensus 147 ~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 147 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred cCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999874 589999999999998 5699999999999999999999975
No 38
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-47 Score=395.76 Aligned_cols=209 Identities=29% Similarity=0.461 Sum_probs=179.8
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+++|++ +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ..|++|||
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999997643 34778999
Q ss_pred EeccCCCccc-cHHHHHhcCCCCCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 457 VSQEPALFAT-SIANNILLGKEDAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
|+|++.+|.. |++||+.++..... ++++.++++..++. ........+||||||||++||||+++
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-----------HLLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-----------TTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999987 99999999753221 23344444444433 33344456899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
+|++||||||||+||+.+++.+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999999998743 899999999999875 59999999999999999999997654
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.6e-47 Score=414.62 Aligned_cols=211 Identities=30% Similarity=0.546 Sum_probs=186.2
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+++|++ . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++. .|++|||
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999963 3 9999999999999999999999999999999999999999999999999987654 4788999
Q ss_pred EeccCCCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 457 VSQEPALFAT-SIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 457 V~Q~~~lf~~-Ti~eNi~~g~~---~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
|+|++.||.. |++|||.|+.. ...++++.++++..++.++..+ ...+||||||||+||||||+++
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999986 99999999732 1122667777777666554433 3468999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
|++||||||||+||+.+++.+.+.|+++. .|+|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++.
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999999874 389999999999987 459999999999999999999998763
No 40
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=7.3e-47 Score=416.18 Aligned_cols=213 Identities=29% Similarity=0.474 Sum_probs=181.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++.+++.. +++||
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 4999999999963 3499999999999999999999999999999999999999999999999999887654 57899
Q ss_pred EEeccCCCccc-cHHHHHhcCCCC--CCH----HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 456 LVSQEPALFAT-SIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~~--~~~----~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
||+|++.||.. |++|||.|+... .+. +++.++++..++.++..+ ...+||||||||+|||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNR-----------YPAQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTS-----------CTTTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999975 999999998531 222 345666666666555443 346899999999999999
Q ss_pred hccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 003976 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 603 (782)
Q Consensus 529 l~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~~~ 603 (782)
|+++|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+ ..||+|++|++|+|++.|+++|+....
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999988753 89999999999987 459999999999999999999998764
No 41
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.2e-47 Score=417.24 Aligned_cols=215 Identities=30% Similarity=0.461 Sum_probs=186.5
Q ss_pred cEEEEeEEEEcCCCCCc--ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC---HHHH
Q 003976 376 QIEFSEVCFAYPSRPHM--VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKWL 450 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~--vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~---~~~l 450 (782)
.|+++||+++|++ .. +|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++.+.+ ....
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 3899999999964 35 999999999999999999999999999999999999999999999999987621 2335
Q ss_pred HhHceEEeccCCCccc-cHHHHHhcCCCC--CC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 451 REQMGLVSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 451 R~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~--~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
|++||||+|++.+|.. |++|||.|+... .+ ++++.++++..++.++..+ ...+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-----------FPRELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHH
Confidence 7889999999999986 999999997532 12 2446666666666555443 3468999999999
Q ss_pred HHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 003976 524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 524 aiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
||||||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|+|++.|+++|+.
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998743 899999999999875 59999999999999999999998
Q ss_pred hcC
Q 003976 601 SKG 603 (782)
Q Consensus 601 ~~~ 603 (782)
.+.
T Consensus 230 ~~p 232 (353)
T 1oxx_K 230 DNP 232 (353)
T ss_dssp HSC
T ss_pred hCc
Confidence 764
No 42
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=5.5e-47 Score=397.67 Aligned_cols=209 Identities=26% Similarity=0.401 Sum_probs=172.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCcCHHHH-HhH
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL--YEPTSGKILLDGHDLKSLQLKWL-REQ 453 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~--~~~~~G~I~i~g~di~~~~~~~l-R~~ 453 (782)
|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |..
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 4 LEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred EEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 899999999964 3499999999999999999999999999999999999 89999999999999998887665 456
Q ss_pred ceEEeccCCCccc-cHHHHHhcCCC---C--CC----HHHHHHHHHHhhhH-hHHhcCCCCccccccCCCCC-CCHHHHH
Q 003976 454 MGLVSQEPALFAT-SIANNILLGKE---D--AS----MDRVIEAAKAANAH-SFVEGLPDGYQTQVGEGGTQ-LSGGQKQ 521 (782)
Q Consensus 454 i~~V~Q~~~lf~~-Ti~eNi~~g~~---~--~~----~~~i~~a~~~a~~~-~~i~~lp~G~~t~vge~G~~-LSgGQkQ 521 (782)
++||+|+|.+|.+ |++||+.++.. . .. .+++.++++..++. ++. + ....+ |||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~----~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-------S----RYLNEGFSGGEKK 150 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-------G----SBTTCC----HHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-------c----CCcccCCCHHHHH
Confidence 9999999999986 99999987531 1 11 12334444444431 221 2 22345 9999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh--cCEEEEEeCCEEEEecChhH
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD--VDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~--aD~I~vl~~G~ive~G~~~e 598 (782)
|++|||||+++|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999999885 48999999999999886 59999999999999999884
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=8.9e-47 Score=416.17 Aligned_cols=213 Identities=27% Similarity=0.448 Sum_probs=185.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC------cCHHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS------LQLKW 449 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~------~~~~~ 449 (782)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++.+ ++.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 3899999999963 349999999999999999999999999999999999999999999999999876 544
Q ss_pred HHhHceEEeccCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHH
Q 003976 450 LREQMGLVSQEPALFAT-SIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~--~~~----~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQR 522 (782)
.+++||||+|++.||.. |++|||.|+.. ..+ ++++.++++..++.++..+ ...+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------CcccCCHHHHHH
Confidence 36789999999999974 99999999732 122 2345666666666555433 346899999999
Q ss_pred HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 003976 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 523 iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~-~aD~I~vl~~G~ive~G~~~eL 599 (782)
+||||||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|+|++.|+++|+
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 899999999999875 5999999999999999999999
Q ss_pred hhcC
Q 003976 600 ISKG 603 (782)
Q Consensus 600 ~~~~ 603 (782)
....
T Consensus 228 ~~~p 231 (372)
T 1g29_1 228 YDKP 231 (372)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8763
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2e-46 Score=396.87 Aligned_cols=216 Identities=24% Similarity=0.334 Sum_probs=179.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCcCHHHH-Hh
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL--YEPTSGKILLDGHDLKSLQLKWL-RE 452 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~--~~~~~G~I~i~g~di~~~~~~~l-R~ 452 (782)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+++.... |.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 5999999999953 3499999999999999999999999999999999999 67999999999999998887665 45
Q ss_pred HceEEeccCCCccc-cHHHHHhcCC---------CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCC-C-CCCHHHH
Q 003976 453 QMGLVSQEPALFAT-SIANNILLGK---------EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG-T-QLSGGQK 520 (782)
Q Consensus 453 ~i~~V~Q~~~lf~~-Ti~eNi~~g~---------~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G-~-~LSgGQk 520 (782)
.|+||+|+|.+|.. |++||+.++. +..+.++..+. +.+.++.+ |+++...++. . +||||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDL-----MEEKIALL--KMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHH-----HHHHHHHT--TCCTTTTTSBTTTTCCHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHH-----HHHHHHHc--CCChhHhcCCcccCCCHHHH
Confidence 69999999999987 9999997642 11222222111 12223322 4433332332 3 5999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh--cCEEEEEeCCEEEEecChh
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD--VDTIMVLKNGQVVESGTHV 597 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~--aD~I~vl~~G~ive~G~~~ 597 (782)
||++|||||+++|+|||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999874 48999999999999876 8999999999999999999
Q ss_pred HHh
Q 003976 598 DLI 600 (782)
Q Consensus 598 eL~ 600 (782)
++.
T Consensus 251 ~~~ 253 (267)
T 2zu0_C 251 LVK 253 (267)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.6e-46 Score=390.65 Aligned_cols=207 Identities=22% Similarity=0.374 Sum_probs=180.6
Q ss_pred EEEEeEEEEcCCC--CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 377 IEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 377 i~~~~v~f~y~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
|+++||+++|++. ..++|+|+||+|+ |++++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1349999999999 9999999999999999999999999 9999999999998765 33 7889
Q ss_pred e-EEeccCCCccccHHHHHhcCCC--CCCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 455 G-LVSQEPALFATSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 455 ~-~V~Q~~~lf~~Ti~eNi~~g~~--~~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
+ ||+|+|.+ +.|++||+.++.+ ...++++.++++..++ + ........+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKL-----------GEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTC-----------CGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCC-----------ChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999999 8899999998642 2345566666655444 3 4455667899999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcC-EEEEEeCCEEEEecChhHHhhc
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVD-TIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD-~I~vl~~G~ive~G~~~eL~~~ 602 (782)
++|++||||||||+||+.+++.+.+.|+++.+ |+|+|||+++.+. .|| +|++|++|++++.|+++|+.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999988754 9999999999975 599 9999999999999999998753
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=9.7e-46 Score=388.55 Aligned_cols=201 Identities=29% Similarity=0.459 Sum_probs=173.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-|+++||+++|+. ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|. +|++|+
T Consensus 4 ~l~i~~l~~~y~~-~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQA-ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETT-TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCC-CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 3899999999962 13499999999999999999999999999999999999999999998 355799
Q ss_pred EEeccCCCc-cccHHHHHhcCCCC-------CC---HHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 456 LVSQEPALF-ATSIANNILLGKED-------AS---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 456 ~V~Q~~~lf-~~Ti~eNi~~g~~~-------~~---~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
||+|+|.+| ..|++||+.++... .. ++++.++++..++.++. .....+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLA-----------KREFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHh-----------cCChhhCCHHHHHHHH
Confidence 999999988 56999999997421 11 23455666665554433 3456799999999999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchh-hhcCEEEEEeCCEEEEecChhHHhh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i-~~aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
|||||+++|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+ +.||+|++|++|+ ++.|+++++.+
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999999999998753 89999999999998 4699999999999 99999999875
Q ss_pred c
Q 003976 602 K 602 (782)
Q Consensus 602 ~ 602 (782)
.
T Consensus 218 ~ 218 (253)
T 2nq2_C 218 S 218 (253)
T ss_dssp H
T ss_pred c
Confidence 3
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-44 Score=370.93 Aligned_cols=196 Identities=19% Similarity=0.369 Sum_probs=167.2
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 10 ~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~ 81 (214)
T 1sgw_A 10 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 81 (214)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred eEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence 5999999999964 5999999999999999999999999999999999999999999999999986 2688999
Q ss_pred EEeccCCCccc-cHHHHHhcCCC----CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 456 LVSQEPALFAT-SIANNILLGKE----DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 456 ~V~Q~~~lf~~-Ti~eNi~~g~~----~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
||+|+|.+|.. |++||+.++.. ...++++.++++.. |++.. +....+||||||||++|||||+
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~laraL~ 149 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLASTLL 149 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHHHH
Confidence 99999999987 99999998631 12244555555443 44445 6677899999999999999999
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEEeCCEEE
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 591 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl~~G~iv 591 (782)
++|++||||||||+||+.++..+.+.|+++. +|+|+|++||+++.+..++..+++.+|+|-
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 9999999999999999999999999998875 479999999999999875444556677763
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=9.1e-43 Score=373.52 Aligned_cols=237 Identities=16% Similarity=0.225 Sum_probs=194.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcCcEEEEeEEEEcC
Q 003976 308 GDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYP 387 (782)
Q Consensus 308 g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~ 387 (782)
+..+-+.+.+++.+... ..++..+...+..++++..+.+|+.++++.+++..+. . + ..+...+.|+++||+|+|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~--~-~-~~~~~~~~i~~~~vs~~y~ 112 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG--E-G-SWKSILTFFNYQNIELITF 112 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS--S-C-CTHHHHHHHHHTTCCHHHH
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC--C-C-cccccCCeEEEEEEEEEcC
Confidence 34455665555444333 4678899999999999999999999999876543111 1 1 1112234699999999996
Q ss_pred CCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCcccc
Q 003976 388 SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATS 467 (782)
Q Consensus 388 ~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~T 467 (782)
.++|+|+||+|++|+++|||||||||||||+++|+|+| +|+| +++|+|+|++|.+|
T Consensus 113 ---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~t 168 (305)
T 2v9p_A 113 ---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLAS 168 (305)
T ss_dssp ---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGG
T ss_pred ---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccccc
Confidence 35999999999999999999999999999999999999 8998 56789999999999
Q ss_pred HHH-HHhcCCCCCCHHHHHHHHHHhhhHhHHhc-CCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCC
Q 003976 468 IAN-NILLGKEDASMDRVIEAAKAANAHSFVEG-LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545 (782)
Q Consensus 468 i~e-Ni~~g~~~~~~~~i~~a~~~a~~~~~i~~-lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsal 545 (782)
+++ ||.++ +++++ ++++++.. ||+|+| |.+|||||||| |||++++|+||| ||+|
T Consensus 169 i~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~L 224 (305)
T 2v9p_A 169 LADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNI 224 (305)
T ss_dssp GTTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESS
T ss_pred HHHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCC
Confidence 998 99997 44553 35678887 999998 78999999999 999999999999 9999
Q ss_pred CHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhcCchhHHHHHhhh
Q 003976 546 DAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 614 (782)
Q Consensus 546 D~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~~~~y~~l~~~~~ 614 (782)
|+++++.+.. +|||+++++.||+| +|++|+|++.|+|++| ++.|++++..+.
T Consensus 225 D~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~ 276 (305)
T 2v9p_A 225 DVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRLD 276 (305)
T ss_dssp CSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTTT
T ss_pred CHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHcc
Confidence 9999988862 39999999999999 9999999999999999 678988886554
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1e-35 Score=347.75 Aligned_cols=199 Identities=27% Similarity=0.383 Sum_probs=167.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.++ .+||
T Consensus 357 ~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i~ 420 (607)
T 3bk7_A 357 LVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVA 420 (607)
T ss_dssp EEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCEE
T ss_pred EEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEEE
Confidence 4899999999953 37999999999999999999999999999999999999999999872 2699
Q ss_pred EEeccCCC-ccccHHHHHhcC-CCCC-CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 456 LVSQEPAL-FATSIANNILLG-KEDA-SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 456 ~V~Q~~~l-f~~Ti~eNi~~g-~~~~-~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
||||++.+ ++.|+.||+... .+.. ..+.+.++++..++ +........+||||||||++|||||+++
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI-----------IDLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC-----------chHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999876 567999998764 1111 12334444444333 2233444568999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKN--GQVVESGTHVDLIS 601 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~--G~ive~G~~~eL~~ 601 (782)
|++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++ |+++..|++++++.
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999999874 58999999999999865 999999986 88889999999875
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8.5e-36 Score=344.75 Aligned_cols=199 Identities=28% Similarity=0.406 Sum_probs=166.5
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
-++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.++ ..|+
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceEE
Confidence 4899999999953 37999999999999999999999999999999999999999999862 2599
Q ss_pred EEeccCCC-ccccHHHHHhcC-CCCC-CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 456 LVSQEPAL-FATSIANNILLG-KEDA-SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 456 ~V~Q~~~l-f~~Ti~eNi~~g-~~~~-~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
||+|++.+ ++.|+.||+... .+.. ..+.+.+ .+..+ |+.........+||||||||++|||||+++
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTE---------LLKPL--GIIDLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHH---------TTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHH---------HHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999976 567999998753 1111 1222222 23322 444445566679999999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKN--GQVVESGTHVDLIS 601 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~--G~ive~G~~~eL~~ 601 (782)
|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++ |+++..|++++++.
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999874 48999999999999865 999999986 78999999999875
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.8e-35 Score=341.24 Aligned_cols=200 Identities=21% Similarity=0.313 Sum_probs=167.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHce
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~ 455 (782)
.++++|++++|.+ ..|++.||+|++||++||+||||||||||+++|.|+++|++|+|.++|. .|+
T Consensus 269 ~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i~ 333 (538)
T 3ozx_A 269 KMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------ILS 333 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CEE
T ss_pred eEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------eeE
Confidence 4889999999963 4688889999999999999999999999999999999999999998875 589
Q ss_pred EEeccCCC-ccccHHHHHhcCCCCC---CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 456 LVSQEPAL-FATSIANNILLGKEDA---SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 456 ~V~Q~~~l-f~~Ti~eNi~~g~~~~---~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
|++|++.. +..|++||+.+..... ..+.+.++++..++ .........+||||||||++|||||++
T Consensus 334 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 334 YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL-----------HRLLESNVNDLSGGELQKLYIAATLAK 402 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTG-----------GGCTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred eechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCC-----------HHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999864 5779999998743221 22333444444333 333445567899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKN--GQVVESGTHVDLIS 601 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~--G~ive~G~~~eL~~ 601 (782)
+|+||||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||+|+||++ |.+...|++.++..
T Consensus 403 ~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 999999999999999999999999999874 48999999999999875 999999986 66777788777654
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2e-35 Score=356.36 Aligned_cols=204 Identities=24% Similarity=0.423 Sum_probs=154.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
|+++||+|+|++++.++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|.++|. ..|+|
T Consensus 672 L~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~y 740 (986)
T 2iw3_A 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIAY 740 (986)
T ss_dssp EEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEEE
T ss_pred EEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceEe
Confidence 9999999999754345999999999999999999999999999999999999999999999872 14788
Q ss_pred EeccCCC-----ccccHHHHHhc---------------------------------------------------------
Q 003976 457 VSQEPAL-----FATSIANNILL--------------------------------------------------------- 474 (782)
Q Consensus 457 V~Q~~~l-----f~~Ti~eNi~~--------------------------------------------------------- 474 (782)
|+|++.. ...|+++|+.+
T Consensus 741 v~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~ 820 (986)
T 2iw3_A 741 IKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECS 820 (986)
T ss_dssp ECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEE
T ss_pred eccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhh
Confidence 8887631 23456665532
Q ss_pred ---------CCC---CCC--------HHHHH-------------HHHH--------HhhhHhHHhcCCCCccccc--cCC
Q 003976 475 ---------GKE---DAS--------MDRVI-------------EAAK--------AANAHSFVEGLPDGYQTQV--GEG 511 (782)
Q Consensus 475 ---------g~~---~~~--------~~~i~-------------~a~~--------~a~~~~~i~~lp~G~~t~v--ge~ 511 (782)
+.+ ..+ .+++. ++.. ...+.+.+..+ |++... ...
T Consensus 821 ~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~~~ 898 (986)
T 2iw3_A 821 FLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSHSR 898 (986)
T ss_dssp EEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHHSC
T ss_pred hhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcCCC
Confidence 110 000 00000 0000 01123333333 454432 345
Q ss_pred CCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhh-hcCEEEEEeCCEE
Q 003976 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQV 590 (782)
Q Consensus 512 G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~-~aD~I~vl~~G~i 590 (782)
..+||||||||++||||++.+|+||||||||++||+.+...+.+.|++. +.|+|+|||+++.+. .||+|++|++|++
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G~I 976 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRM 976 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTTBC
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 6789999999999999999999999999999999999999999999765 679999999999986 4899999999999
Q ss_pred EEecC
Q 003976 591 VESGT 595 (782)
Q Consensus 591 ve~G~ 595 (782)
++.|+
T Consensus 977 v~~G~ 981 (986)
T 2iw3_A 977 TPSGH 981 (986)
T ss_dssp CC---
T ss_pred EEeCC
Confidence 98775
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.1e-34 Score=344.93 Aligned_cols=206 Identities=24% Similarity=0.364 Sum_probs=153.1
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHH---------------------cCCCCCccEEEECCeeCCCcCHHHH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ---------------------RLYEPTSGKILLDGHDLKSLQLKWL 450 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~---------------------~~~~~~~G~I~i~g~di~~~~~~~l 450 (782)
.+|+|+||+|++||++||+||||||||||+++|+ +-+.+.+|.|.++|.++...+....
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~~ 415 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 415 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCCH
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcch
Confidence 4899999999999999999999999999998764 1223445789999998876542211
Q ss_pred HhH-----------------------------------------ceEEeccCCCc-------------------------
Q 003976 451 REQ-----------------------------------------MGLVSQEPALF------------------------- 464 (782)
Q Consensus 451 R~~-----------------------------------------i~~V~Q~~~lf------------------------- 464 (782)
+.. .|++.|+..++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (670)
T 3ux8_A 416 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 495 (670)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBT
T ss_pred hhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeec
Confidence 111 12333332221
Q ss_pred --------cccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHHHHHHHHHHHHhccCC--
Q 003976 465 --------ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRIAIARAVLRNP-- 533 (782)
Q Consensus 465 --------~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgGQkQRiaiARAl~~~p-- 533 (782)
..|++||+.+.......++..+++ ..+ |+. ...+....+||||||||++|||||+.+|
T Consensus 496 ~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~ 564 (670)
T 3ux8_A 496 GKNIAEVLDMTVEDALDFFASIPKIKRKLETL---------YDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNG 564 (670)
T ss_dssp TBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHH---------HHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCS
T ss_pred CCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHH---------HHc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCCCC
Confidence 348889988864321112222222 222 222 2346677899999999999999999886
Q ss_pred -ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEE------eCCEEEEecChhHHhhcCch
Q 003976 534 -KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGTHVDLISKGGE 605 (782)
Q Consensus 534 -~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl------~~G~ive~G~~~eL~~~~~~ 605 (782)
+||||||||++||+.+...+.+.|+++. +|+|+|+|||+++.++.||+|++| ++|+|+++|+++|+.+....
T Consensus 565 p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~ 644 (670)
T 3ux8_A 565 RTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKES 644 (670)
T ss_dssp CEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCcc
Confidence 5999999999999999999999999875 589999999999999999999999 89999999999999876554
Q ss_pred hHH
Q 003976 606 YAA 608 (782)
Q Consensus 606 y~~ 608 (782)
|..
T Consensus 645 ~~~ 647 (670)
T 3ux8_A 645 HTG 647 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.5e-34 Score=341.91 Aligned_cols=204 Identities=23% Similarity=0.360 Sum_probs=139.3
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHH---------------------HHHHcCCCCC-------ccEEEECCeeCC
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTII---------------------SMVQRLYEPT-------SGKILLDGHDLK 443 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~---------------------~ll~~~~~~~-------~G~I~i~g~di~ 443 (782)
.+|+|+||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++.
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 489999999999999999999999999998 8899999998 566677776554
Q ss_pred CcCHHHHHhHceEEeccCCCc--------------------cccHHHHHhcCCC-CCC--HHH-----HHHHHHHhhhHh
Q 003976 444 SLQLKWLREQMGLVSQEPALF--------------------ATSIANNILLGKE-DAS--MDR-----VIEAAKAANAHS 495 (782)
Q Consensus 444 ~~~~~~lR~~i~~V~Q~~~lf--------------------~~Ti~eNi~~g~~-~~~--~~~-----i~~a~~~a~~~~ 495 (782)
. ..|+.+++|+|.+.++ ..|++||+.+... ... +.+ +.++.+..+
T Consensus 112 ~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 184 (670)
T 3ux8_A 112 R----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG--- 184 (670)
T ss_dssp -------CCBHHHHTTCC-------------------------CC--------------------------CHHHHH---
T ss_pred c----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH---
Confidence 3 2345667777665432 3589999988531 011 111 111122222
Q ss_pred HHhcCCCCcccc-ccCCCCCCCHHHHHHHHHHHHhccCCc--eEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEec
Q 003976 496 FVEGLPDGYQTQ-VGEGGTQLSGGQKQRIAIARAVLRNPK--ILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAH 571 (782)
Q Consensus 496 ~i~~lp~G~~t~-vge~G~~LSgGQkQRiaiARAl~~~p~--illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaH 571 (782)
.+..+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +|+|+|+|||
T Consensus 185 ~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 185 FLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 22222 33222 244556899999999999999999998 999999999999999999999998874 5899999999
Q ss_pred CcchhhhcCEEEEE------eCCEEEEecChhHHhhcCc
Q 003976 572 RLSTVRDVDTIMVL------KNGQVVESGTHVDLISKGG 604 (782)
Q Consensus 572 rl~~i~~aD~I~vl------~~G~ive~G~~~eL~~~~~ 604 (782)
+++.+..||+|++| ++|++++.|+++++.+...
T Consensus 263 d~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 263 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred CHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 99999899999999 8999999999999987654
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.5e-34 Score=337.94 Aligned_cols=197 Identities=24% Similarity=0.341 Sum_probs=158.3
Q ss_pred cEEE--------EeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEE---------EEC
Q 003976 376 QIEF--------SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI---------LLD 438 (782)
Q Consensus 376 ~i~~--------~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I---------~i~ 438 (782)
.|++ +||+++|+++ ..+|+|+| +|++||++||+||||||||||+++|.|++.|++|++ .++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred eEEEecCCccccCCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 3788 8999999643 13899999 999999999999999999999999999999999996 456
Q ss_pred CeeCCCcCHHH--HHhHceEEeccC----CCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCC
Q 003976 439 GHDLKSLQLKW--LREQMGLVSQEP----ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512 (782)
Q Consensus 439 g~di~~~~~~~--lR~~i~~V~Q~~----~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G 512 (782)
|.++.++.... .+..+++++|.. .++.+|++||+.... ..+++.++++..++.+.. ....
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~---~~~~~~~~L~~lgL~~~~-----------~~~~ 226 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD---EVGKFEEVVKELELENVL-----------DREL 226 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC---CSSCHHHHHHHTTCTTGG-----------GSBG
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH---HHHHHHHHHHHcCCCchh-----------CCCh
Confidence 76654432121 123578888864 345569999997532 134456666665554332 3334
Q ss_pred CCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCC
Q 003976 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNG 588 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G 588 (782)
.+||||||||++|||||+++|+|||||||||+||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|+++
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 5899999999999999999999999999999999999999999998874 48999999999998865 8999999865
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1e-32 Score=332.85 Aligned_cols=198 Identities=23% Similarity=0.375 Sum_probs=163.1
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
..|...|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|.| |+| +|.+... +.++
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 36888899999964 349999999999999999999999999999999995 554 5654421 1137
Q ss_pred eEEeccC-CCc-cccHHHHHhcCCCCCCHHHHHHHHHHhhhH-hHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 455 GLVSQEP-ALF-ATSIANNILLGKEDASMDRVIEAAKAANAH-SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 455 ~~V~Q~~-~lf-~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~-~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
+|++|++ .++ ..|+.||+.+..... ++++.++++..++. +... ....+||||||||++|||||+.
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~-----------~~~~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIA-----------MPISALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHH-----------SBGGGCCHHHHHHHHHHHHHHT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhc-----------CCcccCCHHHHHHHHHHHHHhc
Confidence 8999986 444 459999998622112 66777777777663 3332 2235799999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCEEE-EecChhHHhhc
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVV-ESGTHVDLISK 602 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~iv-e~G~~~eL~~~ 602 (782)
+|+||||||||++||+.+.+.+.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.+.
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~ 636 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhh
Confidence 9999999999999999999999999988 68999999999999865 8999999999997 58999998754
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-34 Score=330.39 Aligned_cols=198 Identities=21% Similarity=0.390 Sum_probs=164.1
Q ss_pred EeEEEEcCCCCCcccccceEEeeCC-----CEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 380 SEVCFAYPSRPHMVFENLNFSVDAG-----KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 380 ~~v~f~y~~~~~~vL~~isl~i~~G-----~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
++++|+|+.. ..+++|+||++++| |+++|+||||||||||+++|.|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 6788999742 24899999999999 7899999999999999999999999999972 22 2359
Q ss_pred eEEeccCC-CccccHHHHHhcCCCC--CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 455 GLVSQEPA-LFATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 455 ~~V~Q~~~-lf~~Ti~eNi~~g~~~--~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
+|++|++. .|..|+++|+...... ...+...++++..++.+ .......+||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-----------IIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT-----------TSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999975 5678999998653221 23344455555554432 2334456899999999999999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeC--CEEEEecChhHHhhc
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKN--GQVVESGTHVDLISK 602 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~--G~ive~G~~~eL~~~ 602 (782)
+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||+||++ |+++..|++++++..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999998874 48999999999999865 999999997 999999999999875
No 58
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-33 Score=337.12 Aligned_cols=219 Identities=25% Similarity=0.444 Sum_probs=164.6
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHH---------HHHHcCCCCC------cc------
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTII---------SMVQRLYEPT------SG------ 433 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~---------~ll~~~~~~~------~G------ 433 (782)
+.+++++++ ...|+|+||+|++|++++|+|+||||||||+ +++.+...+. +|
T Consensus 588 ~~l~v~~~~-------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~ 660 (916)
T 3pih_A 588 ASLKIKGVR-------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDK 660 (916)
T ss_dssp SEEEEEEEC-------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCE
T ss_pred ceEEEeeec-------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccc
Confidence 346666553 2379999999999999999999999999997 4444443332 33
Q ss_pred EEEECCeeCCCcC----------HHHHH-------------------------------hHceEEeccCCCcc-------
Q 003976 434 KILLDGHDLKSLQ----------LKWLR-------------------------------EQMGLVSQEPALFA------- 465 (782)
Q Consensus 434 ~I~i~g~di~~~~----------~~~lR-------------------------------~~i~~V~Q~~~lf~------- 465 (782)
.|.+|+.++.... .+.+| +..|+++|+..++.
T Consensus 661 ~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~ 740 (916)
T 3pih_A 661 MIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECD 740 (916)
T ss_dssp EEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECT
T ss_pred eEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecc
Confidence 3666666654321 11222 23467777765543
Q ss_pred --------------------------ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHH
Q 003976 466 --------------------------TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ 519 (782)
Q Consensus 466 --------------------------~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQ 519 (782)
.|+.||+.|.......++..++++..++ || ..+|+.+.+|||||
T Consensus 741 ~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGE 810 (916)
T 3pih_A 741 VCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGE 810 (916)
T ss_dssp TTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHH
T ss_pred cccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHH
Confidence 4677777765432222333334433333 33 34788899999999
Q ss_pred HHHHHHHHHhccCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEE------eCCE
Q 003976 520 KQRIAIARAVLRNP---KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVL------KNGQ 589 (782)
Q Consensus 520 kQRiaiARAl~~~p---~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl------~~G~ 589 (782)
||||+|||||+++| +||||||||++||+.+++.+++.|+++. +|+|+|+|+|+++.++.||+|++| ++|+
T Consensus 811 rQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~ 890 (916)
T 3pih_A 811 AQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGY 890 (916)
T ss_dssp HHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCE
T ss_pred HHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCE
Confidence 99999999999876 7999999999999999999999999875 589999999999999999999999 8999
Q ss_pred EEEecChhHHhhcCchhHHHH
Q 003976 590 VVESGTHVDLISKGGEYAALV 610 (782)
Q Consensus 590 ive~G~~~eL~~~~~~y~~l~ 610 (782)
|+++|+|+|+++..+.|..-+
T Consensus 891 Iv~~Gtpeel~~~~~syt~~~ 911 (916)
T 3pih_A 891 IVATGTPEEIAKNPHSYTGRF 911 (916)
T ss_dssp EEEEESHHHHHSCTTCHHHHH
T ss_pred EEEEcCHHHHHhCCchHHHHH
Confidence 999999999998877776544
No 59
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.9e-34 Score=328.27 Aligned_cols=196 Identities=26% Similarity=0.356 Sum_probs=154.0
Q ss_pred EEE-EeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEE---------EECCeeCCCcC
Q 003976 377 IEF-SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI---------LLDGHDLKSLQ 446 (782)
Q Consensus 377 i~~-~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I---------~i~g~di~~~~ 446 (782)
.++ +||+++|++. ..+|+|+| +|++||++|||||||||||||+++|.|+++|++|++ .++|.++.+..
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 445 5899999643 14899999 999999999999999999999999999999999996 45676554321
Q ss_pred HHHH--HhHceEEeccCCC----ccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 447 LKWL--REQMGLVSQEPAL----FATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 447 ~~~l--R~~i~~V~Q~~~l----f~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
.... +..+++++|+..+ +.+|++||+.... ..+++.++++..++.++ ......+||||||
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~~~-----------~~~~~~~LSgGek 164 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELENV-----------LEREIQHLSGGEL 164 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCTTT-----------TTSBGGGCCHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCChh-----------hhCChhhCCHHHH
Confidence 1111 2358899987543 3459999986421 12345666666554322 2233468999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCC
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNG 588 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G 588 (782)
||++|||||+.+|+|||||||||+||+.+...+.+.|+++. .|+|+|+|||++..+.. ||+|++|++|
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999998874 48999999999999865 8999999865
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.6e-32 Score=315.01 Aligned_cols=196 Identities=22% Similarity=0.364 Sum_probs=151.5
Q ss_pred eEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEE-----------EECCeeCCCcCHHH
Q 003976 381 EVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI-----------LLDGHDLKSLQLKW 449 (782)
Q Consensus 381 ~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I-----------~i~g~di~~~~~~~ 449 (782)
|++++|... ...|++++ .+++||++||+||||||||||+++|.|++.|++|+| .++|.++..+....
T Consensus 82 ~~~~~Y~~~-~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSAN-SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTT-SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCC-ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 578899643 23677777 589999999999999999999999999999999998 45555554444444
Q ss_pred HHhHceEE--eccCCC----cc---ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 450 LREQMGLV--SQEPAL----FA---TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 450 lR~~i~~V--~Q~~~l----f~---~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
+++.+..+ +|.... +. .++.+++..... ...+++.++++..++.++.. ....+||||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGe~ 227 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME-KSPEDVKRYIKILQLENVLK-----------RDIEKLSGGEL 227 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC-SCHHHHHHHHHHHTCTGGGG-----------SCTTTCCHHHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh-hHHHHHHHHHHHcCCcchhC-----------CChHHCCHHHH
Confidence 45555433 232111 11 267777665432 34567777777776654433 33458999999
Q ss_pred HHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh-cCEEEEEeCCEE
Q 003976 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQV 590 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~-aD~I~vl~~G~i 590 (782)
||++|||||+++|+|||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|..
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999999875 48999999999999865 899999998754
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=7.5e-32 Score=311.12 Aligned_cols=193 Identities=19% Similarity=0.334 Sum_probs=152.6
Q ss_pred EeEEEEcCCCCCcccccceEEee-CCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEE-----------EECCeeCCCcCH
Q 003976 380 SEVCFAYPSRPHMVFENLNFSVD-AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI-----------LLDGHDLKSLQL 447 (782)
Q Consensus 380 ~~v~f~y~~~~~~vL~~isl~i~-~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I-----------~i~g~di~~~~~ 447 (782)
++++.+|..+ -++-..|.++ +||++||+||||||||||+++|+|++.|++|+| .++|.++..+..
T Consensus 3 ~~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CCEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 3567889532 3555556655 999999999999999999999999999999999 678877654432
Q ss_pred HHHH------hHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 448 KWLR------EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 448 ~~lR------~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
.... ..+.++.|.+.++.+|+++++.... ..+++.++++..++.+.. + ....+|||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~l~~l~l~~~~-------~----~~~~~LSgGe~Q 145 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID---ERGKKDEVKELLNMTNLW-------N----KDANILSGGGLQ 145 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC---CSSCHHHHHHHTTCGGGT-------T----SBGGGCCHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcch---hHHHHHHHHHHcCCchhh-------c----CChhhCCHHHHH
Confidence 2222 2355666777788889999876432 223456666666654332 2 334579999999
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhh-cCEEEEEeCCE
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQ 589 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ 589 (782)
|++|||||+++|+|||||||||+||+.+...+.+.|+++.+|+|+|+|||+++.+.. ||+|++|++|.
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999998789999999999999865 89999998764
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=2.7e-31 Score=317.88 Aligned_cols=217 Identities=25% Similarity=0.398 Sum_probs=162.1
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHH-HHcCC-------C-----------------
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISM-VQRLY-------E----------------- 429 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~l-l~~~~-------~----------------- 429 (782)
..|+++|+++. +|+|+||+|++|+++||+|+||||||||++. |.|.+ .
T Consensus 501 ~~L~v~~l~~~-------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTRN-------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEET-------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeeec-------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 45999999861 6999999999999999999999999999996 66543 2
Q ss_pred -CCcc-------EEEECCeeCCCcCH----------HHHHhHceEEec---------c----------------------
Q 003976 430 -PTSG-------KILLDGHDLKSLQL----------KWLREQMGLVSQ---------E---------------------- 460 (782)
Q Consensus 430 -~~~G-------~I~i~g~di~~~~~----------~~lR~~i~~V~Q---------~---------------------- 460 (782)
+.+| .|.+||.++...+. +.+|+.++++++ .
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 2467 78999998864332 455554443332 1
Q ss_pred CCC------------------------cc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhhhHhHHhcCCCCccc-ccc
Q 003976 461 PAL------------------------FA-TSIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQT-QVG 509 (782)
Q Consensus 461 ~~l------------------------f~-~Ti~eNi~~g~~~-----~~~~~i~~a~~~a~~~~~i~~lp~G~~t-~vg 509 (782)
-.+ +. .||.||+.+...+ ...++.. .+.+.+..+ |+.. ..+
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~------~~~~~L~~~--gL~~~~l~ 725 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIF------RALDTLREV--GLGYLRLG 725 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHH------HHHHHHHHT--TCTTSBTT
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHH------HHHHHHHHc--CCCccccc
Confidence 011 11 2566655432100 0011111 123344444 4444 357
Q ss_pred CCCCCCCHHHHHHHHHHHHhccC---CceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEE
Q 003976 510 EGGTQLSGGQKQRIAIARAVLRN---PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVL 585 (782)
Q Consensus 510 e~G~~LSgGQkQRiaiARAl~~~---p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl 585 (782)
....+||||||||++|||||+++ |+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.++.||+|++|
T Consensus 726 ~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L 805 (842)
T 2vf7_A 726 QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDI 805 (842)
T ss_dssp CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEE
Confidence 78889999999999999999996 79999999999999999999999998874 689999999999999889999999
Q ss_pred ------eCCEEEEecChhHHhhcCchh
Q 003976 586 ------KNGQVVESGTHVDLISKGGEY 606 (782)
Q Consensus 586 ------~~G~ive~G~~~eL~~~~~~y 606 (782)
++|+|++.|+++++.+....|
T Consensus 806 ~p~~g~~~G~Iv~~g~~~el~~~~~~~ 832 (842)
T 2vf7_A 806 GPGAGEDGGRLVAQGTPAEVAQAAGSV 832 (842)
T ss_dssp CSSSGGGCCSEEEEECHHHHTTCTTCS
T ss_pred CCCCCCCCCEEEEEcCHHHHHhCchhH
Confidence 799999999999998765444
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=4.5e-31 Score=296.31 Aligned_cols=201 Identities=20% Similarity=0.294 Sum_probs=155.5
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC--------------------------------------CCccE
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--------------------------------------PTSGK 434 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~--------------------------------------~~~G~ 434 (782)
++++++|++++| +++||||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999966653 45789
Q ss_pred EEECCeeCCCcCHHHHHhH-ceEEeccCCCccccHHHHHhcCCCCCCH---------HHHHHHHH---------------
Q 003976 435 ILLDGHDLKSLQLKWLREQ-MGLVSQEPALFATSIANNILLGKEDASM---------DRVIEAAK--------------- 489 (782)
Q Consensus 435 I~i~g~di~~~~~~~lR~~-i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~---------~~i~~a~~--------------- 489 (782)
+++||.+++..++..+++. +++++|++.++-.+..++..+-...... .++.++.+
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999988788888877 7999999988877666555442211100 00000000
Q ss_pred ---------------------------------HhhhHhHHhcC--C----------------CCccc---cccCCCCC-
Q 003976 490 ---------------------------------AANAHSFVEGL--P----------------DGYQT---QVGEGGTQ- 514 (782)
Q Consensus 490 ---------------------------------~a~~~~~i~~l--p----------------~G~~t---~vge~G~~- 514 (782)
...+.+.+..+ | .|.+. .++.++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 00111222222 2 13232 34444444
Q ss_pred -------CCHHHHHHHHHHHHhccCC--ceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEE
Q 003976 515 -------LSGGQKQRIAIARAVLRNP--KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 585 (782)
Q Consensus 515 -------LSgGQkQRiaiARAl~~~p--~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl 585 (782)
||||||||++|||||+.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||+|++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999988899999999999999999999999
Q ss_pred ----eCCEEEEec
Q 003976 586 ----KNGQVVESG 594 (782)
Q Consensus 586 ----~~G~ive~G 594 (782)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999998653
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=4.4e-30 Score=307.60 Aligned_cols=215 Identities=22% Similarity=0.344 Sum_probs=162.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHH-c----CCC---CCcc-------------E
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ-R----LYE---PTSG-------------K 434 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~-~----~~~---~~~G-------------~ 434 (782)
.++++|++. .+|+|+||+|++|+++||+|+||||||||+++|+ | .+. +..| .
T Consensus 629 ~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 629 WLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp EEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred EEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 488898852 2799999999999999999999999999999854 2 111 1223 4
Q ss_pred EEECCeeCCCc---CHH-------HHH---------hHceEEeccCCC--------------------------------
Q 003976 435 ILLDGHDLKSL---QLK-------WLR---------EQMGLVSQEPAL-------------------------------- 463 (782)
Q Consensus 435 I~i~g~di~~~---~~~-------~lR---------~~i~~V~Q~~~l-------------------------------- 463 (782)
|.+||.++..- ++. .+| +.+||++|...+
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 88999888532 111 222 346888885321
Q ss_pred -----------------------ccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccc-cccCCCCCCCHHH
Q 003976 464 -----------------------FATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGGQ 519 (782)
Q Consensus 464 -----------------------f~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t-~vge~G~~LSgGQ 519 (782)
...|+.||+.|... . .++.++ .+.+..+ |+.. ..+....+|||||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~--~~~~~~------~~~L~~~--gL~~~~l~~~~~~LSGGe 850 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-I--PKIKRK------LETLYDV--GLGYMKLGQPATTLSGGE 850 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-C--HHHHHH------HHHHHHT--TCSSSBTTCCGGGCCHHH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-c--hhHHHH------HHHHHHc--CCCcccccCchhhCCHHH
Confidence 01256666665432 1 111111 2334444 4554 5677888999999
Q ss_pred HHHHHHHHHhccCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEE------eCCE
Q 003976 520 KQRIAIARAVLRNP---KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVL------KNGQ 589 (782)
Q Consensus 520 kQRiaiARAl~~~p---~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl------~~G~ 589 (782)
|||++|||||+++| +||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.++.||+|++| ++|+
T Consensus 851 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~ 930 (972)
T 2r6f_A 851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQ 930 (972)
T ss_dssp HHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCE
Confidence 99999999999875 9999999999999999999999998875 589999999999999999999999 7999
Q ss_pred EEEecChhHHhhcCchhHH
Q 003976 590 VVESGTHVDLISKGGEYAA 608 (782)
Q Consensus 590 ive~G~~~eL~~~~~~y~~ 608 (782)
|++.|+++++.+....|..
T Consensus 931 Iv~~g~~~el~~~~~~~t~ 949 (972)
T 2r6f_A 931 IVAVGTPEEVAEVKESHTG 949 (972)
T ss_dssp EEEEESHHHHHTCTTCHHH
T ss_pred EEEecCHHHHHhCchhHHH
Confidence 9999999999876555544
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.7e-34 Score=323.31 Aligned_cols=195 Identities=15% Similarity=0.121 Sum_probs=154.6
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc-E-EEECCeeCCCcCHHHHHhH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-K-ILLDGHDLKSLQLKWLREQ 453 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G-~-I~i~g~di~~~~~~~lR~~ 453 (782)
-++++||+|+|+ ++||++++|++++|+||||||||||+++|+|++.|++| + |.+|| + .|+.
T Consensus 118 mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 466667776662 79999999999999999999999999999999999999 9 99999 2 3678
Q ss_pred ceEEeccCCCcc----ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH-
Q 003976 454 MGLVSQEPALFA----TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA- 528 (782)
Q Consensus 454 i~~V~Q~~~lf~----~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA- 528 (782)
+++|||++.+|. .|++||+ |+........ ....+.+.+..+ |++.... ..+||||||||++||||
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~-----~~~~~~~ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~ 250 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGAT-----LLHNKQPMVKNF--GLERINE--NKDLYLECISQLGQVVGQ 250 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC-----SSCCBCCEECCC--CSSSGGG--CHHHHHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcc-----hHHHHHHHHHHh--CCCcccc--hhhhhHHHHHHHHHHHHH
Confidence 999999996654 4899999 7643110000 000111222222 5555443 67999999999999999
Q ss_pred -hccCCce----EEEeC-CCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcc------hh-hhcCE-----EEEEe-CCE
Q 003976 529 -VLRNPKI----LLLDE-ATSALDAESELIVQRALEKIMSNRTTIVVAHRLS------TV-RDVDT-----IMVLK-NGQ 589 (782)
Q Consensus 529 -l~~~p~i----llLDE-~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~------~i-~~aD~-----I~vl~-~G~ 589 (782)
|+.+|++ ||||| ||++||+. .+.+.+.+++. ++|+|+|+|+.+ .+ +.||+ |++|+ +|+
T Consensus 251 rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~ 327 (460)
T 2npi_A 251 RLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDG 327 (460)
T ss_dssp HHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTT
T ss_pred HhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCc
Confidence 9999999 99999 99999999 77777777663 789999999988 44 45899 99999 999
Q ss_pred EEEecChhHHhh
Q 003976 590 VVESGTHVDLIS 601 (782)
Q Consensus 590 ive~G~~~eL~~ 601 (782)
|+ .|+++++.+
T Consensus 328 iv-~g~~~~~~~ 338 (460)
T 2npi_A 328 VS-AVDDVYKRS 338 (460)
T ss_dssp CC-CCCHHHHHH
T ss_pred EE-ECCHHHHhh
Confidence 99 999998854
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=1.2e-29 Score=305.00 Aligned_cols=218 Identities=22% Similarity=0.319 Sum_probs=161.1
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHH-----cCCC---CCcc-------------
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ-----RLYE---PTSG------------- 433 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~-----~~~~---~~~G------------- 433 (782)
.-++++|++. .+|+|+||+|++|+++||+|+||||||||+++|+ +.+. +..|
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 3589999852 2799999999999999999999999999999853 2222 2334
Q ss_pred EEEECCeeCCCc---CH-------HHHH---------hHceEEeccCCC---------------------c---------
Q 003976 434 KILLDGHDLKSL---QL-------KWLR---------EQMGLVSQEPAL---------------------F--------- 464 (782)
Q Consensus 434 ~I~i~g~di~~~---~~-------~~lR---------~~i~~V~Q~~~l---------------------f--------- 464 (782)
.|.+|+.++..- ++ +.+| +.+||++|...+ |
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 356677766421 11 1222 346777775321 0
Q ss_pred -------------------------cccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccc-cccCCCCCCCHH
Q 003976 465 -------------------------ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGG 518 (782)
Q Consensus 465 -------------------------~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t-~vge~G~~LSgG 518 (782)
..|+.||+.|... . .++.+ ..+.+..+ |+.. ..+....+||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~-~--~~~~~------~~~~L~~l--gL~~~~l~~~~~~LSGG 867 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP-I--AGVHR------YLRTLVDV--GLGYVRLGQPAPTLSGG 867 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT-C--HHHHH------HHHHHHHT--TGGGSBTTCCGGGSCHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc-c--hHHHH------HHHHHHHc--CCCcccccCccccCCHH
Confidence 1245555555421 1 11111 12334444 4554 567888899999
Q ss_pred HHHHHHHHHHhccCC---ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEE------eCC
Q 003976 519 QKQRIAIARAVLRNP---KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVL------KNG 588 (782)
Q Consensus 519 QkQRiaiARAl~~~p---~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl------~~G 588 (782)
||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.++.||+|++| ++|
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G 947 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGG 947 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCS
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCC
Confidence 999999999999875 9999999999999999999999998874 689999999999999999999999 699
Q ss_pred EEEEecChhHHhhcCchhHHHH
Q 003976 589 QVVESGTHVDLISKGGEYAALV 610 (782)
Q Consensus 589 ~ive~G~~~eL~~~~~~y~~l~ 610 (782)
+|++.|+++++.+....|...+
T Consensus 948 ~Iv~~G~~~el~~~~~~~t~~~ 969 (993)
T 2ygr_A 948 TVVAQGTPEDVAAVPASYTGKF 969 (993)
T ss_dssp EEEEEECHHHHHHCTTCHHHHH
T ss_pred EEEEecCHHHHHhCCHHHHHHH
Confidence 9999999999988765565443
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=3.2e-28 Score=264.48 Aligned_cols=202 Identities=21% Similarity=0.253 Sum_probs=147.2
Q ss_pred cceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC------------------------------------------------
Q 003976 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL------------------------------------------------ 427 (782)
Q Consensus 396 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~------------------------------------------------ 427 (782)
++++++.+| +++|+||||||||||+.+|..+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578889999 9999999999999999999843
Q ss_pred --CCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCc-cccHHHHHhcCCCC---------------CCHHHHHHHHH
Q 003976 428 --YEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALF-ATSIANNILLGKED---------------ASMDRVIEAAK 489 (782)
Q Consensus 428 --~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf-~~Ti~eNi~~g~~~---------------~~~~~i~~a~~ 489 (782)
+.+.+|.+.+||.+++.-+...+...+++.+|+..++ .|++.+|+.....+ .+.+++.+...
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3445689999999987666777777899999998766 88999998764211 01112222211
Q ss_pred Hhh------------h-HhHHhcCCCCccccccC------CCCCCCHHHHHHHHHHHHhc----cCCceEEEeCCCCCCC
Q 003976 490 AAN------------A-HSFVEGLPDGYQTQVGE------GGTQLSGGQKQRIAIARAVL----RNPKILLLDEATSALD 546 (782)
Q Consensus 490 ~a~------------~-~~~i~~lp~G~~t~vge------~G~~LSgGQkQRiaiARAl~----~~p~illLDE~tsalD 546 (782)
..- + .+....++.|+++.++. ....||||||||++||||+. ++|++|||||||++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 110 0 01113456677775432 35689999999999999996 7899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEE--EEEeCCEE-EEecChhH
Q 003976 547 AESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTI--MVLKNGQV-VESGTHVD 598 (782)
Q Consensus 547 ~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I--~vl~~G~i-ve~G~~~e 598 (782)
+.+.+.+.+.|+++.+++|+|+|||+.+.++.||++ ++|++|+. +...+.+|
T Consensus 256 ~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 256 DYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 999999999999987789999999999888899987 88888864 33344333
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=4.6e-29 Score=254.08 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=102.5
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 471 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eN 471 (782)
.+|+|+ ++|++++|+||||||||||+++|.|+ +|++|+|. +.++.. +...+|++||||+|++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 389995 89999999999999999999999999 99999994 333331 2234578899999998 677
Q ss_pred H-hcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHH
Q 003976 472 I-LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550 (782)
Q Consensus 472 i-~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e 550 (782)
+ .++.+. .+.+........+.+.+.. |+ |||||++|||||+.+|++||||||||+ ++
T Consensus 79 l~~~~~~~--~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 79 IDPYLRPL--HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp -CTTTHHH--HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHHH--HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 7 443210 0000000000112222321 22 999999999999999999999999999 88
Q ss_pred HHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCE
Q 003976 551 LIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 589 (782)
Q Consensus 551 ~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ 589 (782)
+.+.+.|+++.+|+|+| |||+++.+. ++...++|.
T Consensus 137 ~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~ 171 (208)
T 3b85_A 137 AQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGL 171 (208)
T ss_dssp HHHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcH
Confidence 88999998874578888 999998654 344445553
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.93 E-value=5.3e-30 Score=263.07 Aligned_cols=165 Identities=15% Similarity=0.171 Sum_probs=123.6
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH-HHHHhHceEEeccCCCccc-----
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQMGLVSQEPALFAT----- 466 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~-~~lR~~i~~V~Q~~~lf~~----- 466 (782)
.|+|+||+|++|++++|+||||||||||+++|.|++ | |+|.+ |.++...+. ...|+.++|++|++.+|..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 799999999999999999999999999999999999 6 99999 887755432 2356789999999866643
Q ss_pred ------cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHH-----HHHhccCCce
Q 003976 467 ------SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI-----ARAVLRNPKI 535 (782)
Q Consensus 467 ------Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiai-----ARAl~~~p~i 535 (782)
++.+| .+|.+ .+++.++++.. ....++ .+||||||||++| ||+++.+|++
T Consensus 88 ~~l~~~~~~~~-~~g~~---~~~i~~~l~~~------------~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGTL---KSEYDKAKEQN------------KICLFE---MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp CEEEEEEETTE-EEEEE---HHHHHHHHHTT------------CEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred chhhhhhcccc-cCCCc---HHHHHHHHhCC------------CcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 34444 34433 34455555432 122222 6899999999999 9999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeC
Q 003976 536 LLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 587 (782)
Q Consensus 536 llLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~ 587 (782)
++|||||+++|.+++..+++.+.+..+++| ++| +..||.|+|+++
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999998877777 788 688999998865
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=7.8e-27 Score=230.29 Aligned_cols=149 Identities=15% Similarity=0.203 Sum_probs=108.9
Q ss_pred cceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCC--CccccHHHHHh
Q 003976 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPA--LFATSIANNIL 473 (782)
Q Consensus 396 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~--lf~~Ti~eNi~ 473 (782)
|+||++++||+++|+||||||||||++++.+ |... ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999652 1111 2334444 67778762 33333333321
Q ss_pred cCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHH---
Q 003976 474 LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE--- 550 (782)
Q Consensus 474 ~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e--- 550 (782)
. .++ ..+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 64 ~------------~~~--------~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y------------IVS--------KRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H------------HHH--------HHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H------------HHH--------HHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 111 11123666555543 45699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHHHh-CCCeEEEEecCcchhhhcCEE
Q 003976 551 -------------LIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTI 582 (782)
Q Consensus 551 -------------~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I 582 (782)
+.+.+.|+++. +|.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77777766553 489999999999999887765
No 71
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.92 E-value=7.5e-25 Score=241.83 Aligned_cols=83 Identities=24% Similarity=0.377 Sum_probs=76.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhc------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEE
Q 003976 510 EGGTQLSGGQKQRIAIARAVL------RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTI 582 (782)
Q Consensus 510 e~G~~LSgGQkQRiaiARAl~------~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I 582 (782)
....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++..+.||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 455689999999999999999 7999999999999999999999999998874 589999999999998889999
Q ss_pred EEEeCCEEEE
Q 003976 583 MVLKNGQVVE 592 (782)
Q Consensus 583 ~vl~~G~ive 592 (782)
++|++|+|++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 72
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.92 E-value=1.8e-27 Score=259.12 Aligned_cols=141 Identities=16% Similarity=0.209 Sum_probs=119.2
Q ss_pred EEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEe
Q 003976 379 FSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVS 458 (782)
Q Consensus 379 ~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~ 458 (782)
|++|+| | .++++++||.+++|+.++|+||||||||||+++|.|+++|++|.|+++|.+ ++....+|+.+++++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe
Confidence 777887 7 248999999999999999999999999999999999999999999999975 333223455555543
Q ss_pred ccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEE
Q 003976 459 QEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLL 538 (782)
Q Consensus 459 Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illL 538 (782)
| |||+||++|||||.++|+++||
T Consensus 224 --------------------------------------------------g-------gg~~~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 224 --------------------------------------------------G-------GNITSADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp --------------------------------------------------B-------TTBCHHHHHHHHTTSCCSEEEE
T ss_pred --------------------------------------------------C-------CChhHHHHHHHHhhhCCCEEEE
Confidence 0 8999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhCCC-eEEEEecCcchhhhcCEEEEEeCCEE
Q 003976 539 DEATSALDAESELIVQRALEKIMSNR-TTIVVAHRLSTVRDVDTIMVLKNGQV 590 (782)
Q Consensus 539 DE~tsalD~~~e~~i~~~l~~~~~~~-T~i~iaHrl~~i~~aD~I~vl~~G~i 590 (782)
||||+. .+.+.|+.+..|+ |+|+++|+++..+.||||++|++|+.
T Consensus 247 dE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 247 GELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp CCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred cCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 999992 2456677766665 79999999998899999999998863
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.91 E-value=1.1e-26 Score=230.89 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=110.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHH
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVI 485 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~ 485 (782)
.++|+||||||||||+++|+|++. |.++|.+.++......++++||++|++ +..+|+ ++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~--------- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSS--------- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEE---------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHh---------
Confidence 689999999999999999999995 667887765554335678999999987 222332 110
Q ss_pred HHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH-----hccCCceEEEeC--CCCCCCHHHHHHHHHHHH
Q 003976 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA-----VLRNPKILLLDE--ATSALDAESELIVQRALE 558 (782)
Q Consensus 486 ~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA-----l~~~p~illLDE--~tsalD~~~e~~i~~~l~ 558 (782)
. .++ .+..++..+.+||||||||++|||| ++.+|+++|||| ||+++|+.+.+.+.+.++
T Consensus 62 -------~-----~~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 62 -------K-----FFT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp -------T-----TCC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred -------h-----cCC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 0 001 1245778888999999999999996 999999999999 999999999999999887
Q ss_pred HHhCCCeEEEEec---Ccchhhh-cCEEEEEeCCEEEE
Q 003976 559 KIMSNRTTIVVAH---RLSTVRD-VDTIMVLKNGQVVE 592 (782)
Q Consensus 559 ~~~~~~T~i~iaH---rl~~i~~-aD~I~vl~~G~ive 592 (782)
+ .+.|+|+++| +...+.. ||+ .+|+|++
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4677999996 5566654 566 5677766
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.90 E-value=1.3e-26 Score=261.01 Aligned_cols=195 Identities=14% Similarity=0.148 Sum_probs=159.0
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCe---eCCCcC-----
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH---DLKSLQ----- 446 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~---di~~~~----- 446 (782)
+.++++||++.|+.. ..+|+++ |+|++||+++|+||||||||||+++|.|+++|+.|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 468899999999632 3499999 999999999999999999999999999999999999999998 565432
Q ss_pred HHHHHhHceEEecc-CC-CccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHH
Q 003976 447 LKWLREQMGLVSQE-PA-LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 447 ~~~lR~~i~~V~Q~-~~-lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRia 524 (782)
...+++.++||+|+ .. ...-|+.+|+.+.. ++... +...+..++ +...+||||| ||++
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~-~~~~v~~~l------------d~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD-RGQHVLLIM------------DSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-TTCEEEEEE------------ECHHHHHHHH-HHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-CCCCHHHHH------------HhHHHHHHHH-HHHH
Confidence 45688899999995 33 44569999998742 11110 111111111 2356899999 9999
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC-----CC-----eEEEEecCcchhhhcCEEEEEeCCEEEEec
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-----NR-----TTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~-----~~-----T~i~iaHrl~~i~~aD~I~vl~~G~ive~G 594 (782)
|| +.+|++ |++||+.++..+.+.++++.+ |+ |++++||+++ ...||++++|.+|+|+..|
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 99 999998 999999999999999988754 54 9999999999 7789999999999999999
Q ss_pred ChhHHhh
Q 003976 595 THVDLIS 601 (782)
Q Consensus 595 ~~~eL~~ 601 (782)
++.++..
T Consensus 338 ~~~~~~~ 344 (438)
T 2dpy_A 338 RLAEAGH 344 (438)
T ss_dssp HHHHTTC
T ss_pred CHHHccC
Confidence 9988754
No 75
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.89 E-value=1.6e-23 Score=250.76 Aligned_cols=101 Identities=26% Similarity=0.380 Sum_probs=91.1
Q ss_pred Ccccc-ccCCCCCCCHHHHHHHHHHHHhccCC--ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhh
Q 003976 503 GYQTQ-VGEGGTQLSGGQKQRIAIARAVLRNP--KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD 578 (782)
Q Consensus 503 G~~t~-vge~G~~LSgGQkQRiaiARAl~~~p--~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~ 578 (782)
|++.. .+....+|||||||||+|||||.++| ++|||||||++||+...+.+.+.|+++. .|.|+|+|+|+++.++.
T Consensus 367 GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~ 446 (842)
T 2vf7_A 367 GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRR 446 (842)
T ss_dssp TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTT
T ss_pred CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHh
Confidence 55433 56667799999999999999999999 4999999999999999999999998885 48999999999999999
Q ss_pred cCEEEEE------eCCEEEEecChhHHhhcC
Q 003976 579 VDTIMVL------KNGQVVESGTHVDLISKG 603 (782)
Q Consensus 579 aD~I~vl------~~G~ive~G~~~eL~~~~ 603 (782)
||+|++| ++|+++..|+++++.+..
T Consensus 447 aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~ 477 (842)
T 2vf7_A 447 ADWLVDVGPEAGEKGGEILYSGPPEGLKHVP 477 (842)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECGGGGGGCT
T ss_pred CCEEEEeCCCcccCCCEEEEecCHHHHHhch
Confidence 9999999 799999999999998753
No 76
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=1e-25 Score=251.03 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=132.8
Q ss_pred cccccceEEeeCCC--------------------EEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHH
Q 003976 392 MVFENLNFSVDAGK--------------------TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 451 (782)
Q Consensus 392 ~vL~~isl~i~~G~--------------------~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR 451 (782)
.+|+|+||++++|+ .+||+||||||||||+|+|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 48999999999999 99999999999999999999999999999999998763 1
Q ss_pred hHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHH--HHHHHHHHHHh
Q 003976 452 EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG--QKQRIAIARAV 529 (782)
Q Consensus 452 ~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgG--QkQRiaiARAl 529 (782)
.++++|++...+-|+.||+.++.+. +++.+.++..++.+ ++..+ . |||| ||||++||||+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKAI 171 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGSS---CCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccchH---HHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHHH
Confidence 3899999865567999998887542 34555666655433 22222 2 8999 99999999999
Q ss_pred cc----------CCceEEEeCCCCCCCHHHHHHHHHHHHHHh------C----CCeEEEEecCcch--hhh-cCEE
Q 003976 530 LR----------NPKILLLDEATSALDAESELIVQRALEKIM------S----NRTTIVVAHRLST--VRD-VDTI 582 (782)
Q Consensus 530 ~~----------~p~illLDE~tsalD~~~e~~i~~~l~~~~------~----~~T~i~iaHrl~~--i~~-aD~I 582 (782)
.+ +|++++|||||++||+.+++.+.+.|+++. . .+++++.||.++. ++. ||+|
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99 999999999999999999999998887763 1 2567778998876 544 5666
No 77
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.87 E-value=1.4e-25 Score=236.25 Aligned_cols=174 Identities=21% Similarity=0.188 Sum_probs=147.6
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC-ccEEEECCeeCCCcCHHHHHhHceEEec-----cCCCcc
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-SGKILLDGHDLKSLQLKWLREQMGLVSQ-----EPALFA 465 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~-~G~I~i~g~di~~~~~~~lR~~i~~V~Q-----~~~lf~ 465 (782)
++|+|+| +++|++++|+|||||||||++++|+|+++|+ +|+|.++|.++..+. +..+++|+| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 3899999 9999999999999999999999999999998 999999999887553 445788999 667788
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHhhh-----------------HhHH------------hcCCCCcccccc
Q 003976 466 TSIANNILLGKEDA-------SMDRVIEAAKAANA-----------------HSFV------------EGLPDGYQTQVG 509 (782)
Q Consensus 466 ~Ti~eNi~~g~~~~-------~~~~i~~a~~~a~~-----------------~~~i------------~~lp~G~~t~vg 509 (782)
.+|+.+++.. |+. +.+.+..+++.+.. +..+ ..+|+++++.|+
T Consensus 89 ~~la~aL~~~-p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~ 167 (261)
T 2eyu_A 89 DALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 167 (261)
T ss_dssp HHHHHHHHHC-CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHhhC-CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEE
Confidence 8999999884 544 66666666665432 1111 135678999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhccCCce--EEEeCCCCCCCHHH---------HHHHHHHHHHHhCCCeEEEEecCcc
Q 003976 510 EGGTQLSGGQKQRIAIARAVLRNPKI--LLLDEATSALDAES---------ELIVQRALEKIMSNRTTIVVAHRLS 574 (782)
Q Consensus 510 e~G~~LSgGQkQRiaiARAl~~~p~i--llLDE~tsalD~~~---------e~~i~~~l~~~~~~~T~i~iaHrl~ 574 (782)
+++..+||| ||+++||+++.+|+| +|+||+||++|... +..++++++...+|+|++.++||++
T Consensus 168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHC
T ss_pred EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHh
Confidence 999999999 999999999999999 99999999999873 5578999999999999999999997
No 78
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.87 E-value=7.6e-25 Score=216.01 Aligned_cols=111 Identities=21% Similarity=0.262 Sum_probs=90.0
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCcC---HHHHH-hHce----EEeccCCCccccHHHHHh
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSLQ---LKWLR-EQMG----LVSQEPALFATSIANNIL 473 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~di~~~~---~~~lR-~~i~----~V~Q~~~lf~~Ti~eNi~ 473 (782)
++++|||+||||||||+++|.|+|+|+ .|.|.+||.++.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999998887 77888 5899 899999988 111
Q ss_pred cCCCCCCHHHHHHHHHHhhhHhHHhc-CCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceE
Q 003976 474 LGKEDASMDRVIEAAKAANAHSFVEG-LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 536 (782)
Q Consensus 474 ~g~~~~~~~~i~~a~~~a~~~~~i~~-lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~il 536 (782)
+ + ++. .+++++++.. || ||||.|+|+ |||||||||+||||++++|+|.
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 222 7899999999 99 999999995 9999999999999999999874
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.87 E-value=2e-25 Score=241.00 Aligned_cols=143 Identities=20% Similarity=0.219 Sum_probs=114.8
Q ss_pred CCCcCcEEEEeEEEEcCCCCCcccccceEE-----------------------eeCCCEEEEeCCCCCcHHHHHHHHHcC
Q 003976 371 PKLAGQIEFSEVCFAYPSRPHMVFENLNFS-----------------------VDAGKTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 371 ~~~~g~i~~~~v~f~y~~~~~~vL~~isl~-----------------------i~~G~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
...++.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|.|+
T Consensus 38 ~~~~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 38 RGLGEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCTTCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34466799999999993 477777765 899999999999999999999999999
Q ss_pred CCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcC----CCCC-CHHHHHHHHHHhhhHhHHhcCCC
Q 003976 428 YEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG----KEDA-SMDRVIEAAKAANAHSFVEGLPD 502 (782)
Q Consensus 428 ~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g----~~~~-~~~~i~~a~~~a~~~~~i~~lp~ 502 (782)
++|..|. .++++|+|++.++..|++||+.+. .|+. +.+.+. +++..+..
T Consensus 114 l~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~---------~~L~~l~~ 167 (312)
T 3aez_A 114 LARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALM---------RFVTSVKS 167 (312)
T ss_dssp HHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHH---------HHHHHHHT
T ss_pred ccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHH---------HHHHHhCC
Confidence 9998664 369999999999988999999763 2321 223333 33333333
Q ss_pred Ccc-ccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCH
Q 003976 503 GYQ-TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547 (782)
Q Consensus 503 G~~-t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~ 547 (782)
|+. ..+ ..|||||+||+++|||++.+|+|||||||++.+|+
T Consensus 168 ~~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 168 GSDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TCSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CcccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 443 333 47999999999999999999999999999999986
No 80
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.86 E-value=1.7e-25 Score=247.36 Aligned_cols=174 Identities=20% Similarity=0.189 Sum_probs=148.3
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC-ccEEEECCeeCCCcCHHHHHhHceEEec-----cCCCccc
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-SGKILLDGHDLKSLQLKWLREQMGLVSQ-----EPALFAT 466 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~-~G~I~i~g~di~~~~~~~lR~~i~~V~Q-----~~~lf~~ 466 (782)
+|++++ +++|+.++|+|||||||||++++|+|+|+|+ +|+|.+.|.++. + .+|+.+++|+| ++..|++
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHH
Confidence 567765 8999999999999999999999999999998 899988776764 2 36788999999 8999999
Q ss_pred cHHHHHhcCCCCC-------CHHHHHHHHHHhhhH-----------------hHH------------hcCCCCccccccC
Q 003976 467 SIANNILLGKEDA-------SMDRVIEAAKAANAH-----------------SFV------------EGLPDGYQTQVGE 510 (782)
Q Consensus 467 Ti~eNi~~g~~~~-------~~~~i~~a~~~a~~~-----------------~~i------------~~lp~G~~t~vge 510 (782)
+|++|++.. |+. +.+.+..+++.++.. ..+ ..+|+++++.|++
T Consensus 201 ~l~~~L~~~-pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 201 ALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHTTSC-CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHhhhC-cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 999999984 655 777788888776542 111 1246789999999
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCce--EEEeCCCCCCCHH----H-----HHHHHHHHHHHhCCCeEEEEecCcch
Q 003976 511 GGTQLSGGQKQRIAIARAVLRNPKI--LLLDEATSALDAE----S-----ELIVQRALEKIMSNRTTIVVAHRLST 575 (782)
Q Consensus 511 ~G~~LSgGQkQRiaiARAl~~~p~i--llLDE~tsalD~~----~-----e~~i~~~l~~~~~~~T~i~iaHrl~~ 575 (782)
++..+||| ||++|||+++.+|+| +|+||+||++|.. + +..++++++...+|+|++.++||++.
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 99999999 899999999999999 9999999999965 3 45788889888899999999999984
No 81
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.86 E-value=3.7e-23 Score=222.26 Aligned_cols=176 Identities=19% Similarity=0.236 Sum_probs=128.6
Q ss_pred cccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC----HHHH--HhHceEEeccCC-Ccc-
Q 003976 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ----LKWL--REQMGLVSQEPA-LFA- 465 (782)
Q Consensus 394 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~----~~~l--R~~i~~V~Q~~~-lf~- 465 (782)
++++||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|++|+|++. ++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688899999999999999999999999999999999999999999987653 2333 457999999998 765
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc--eEEEeCCCC
Q 003976 466 TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK--ILLLDEATS 543 (782)
Q Consensus 466 ~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~--illLDE~ts 543 (782)
.|++||+.++.....+ ...++.+ |...........|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d------------~~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD------------VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCS------------EEEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCc------------chHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 4999999875311000 0111111 22111112223588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEec---------Ccchhh-hcCEEEEEeCCEEE
Q 003976 544 ALDAESELIVQRALEKIMSNRTTIVVAH---------RLSTVR-DVDTIMVLKNGQVV 591 (782)
Q Consensus 544 alD~~~e~~i~~~l~~~~~~~T~i~iaH---------rl~~i~-~aD~I~vl~~G~iv 591 (782)
++|+.++. +.+.+ ..+.|+|++|| .++.+. ..+.|.++..|+.+
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998653 22222 24899999999 334443 36899999999653
No 82
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.85 E-value=1.3e-21 Score=214.65 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHhc---------cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEE
Q 003976 514 QLSGGQKQRIAIARAVL---------RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMV 584 (782)
Q Consensus 514 ~LSgGQkQRiaiARAl~---------~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~v 584 (782)
.||||||||++|||+|+ .+|||||||||||+||+..++.+.+.|.++. .|+|++|| ++. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998864 79999999 555 8999999
Q ss_pred EeCCEEEEecChhHHh
Q 003976 585 LKNGQVVESGTHVDLI 600 (782)
Q Consensus 585 l~~G~ive~G~~~eL~ 600 (782)
|++|+|++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999873
No 83
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.85 E-value=7e-24 Score=224.46 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=97.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc-cHHHHHhcCCCCC---CH
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDA---SM 481 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~~---~~ 481 (782)
++|||||||||||||+++|.|++.|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.||.... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998743 2346789999999998866 9999999986422 12
Q ss_pred HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 003976 482 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561 (782)
Q Consensus 482 ~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~ 561 (782)
+.+.+... .++...++ ..||||||||+++|||++. +++|||||++||+... +.++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~----~~l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHHH
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH----HHHHHHH
Confidence 33433333 23322222 3699999999999999876 9999999999999863 3333444
Q ss_pred CCCeEEEEecCcchhh
Q 003976 562 SNRTTIVVAHRLSTVR 577 (782)
Q Consensus 562 ~~~T~i~iaHrl~~i~ 577 (782)
+..++|+|.|+.+++.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 4489999999987763
No 84
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.84 E-value=1.2e-22 Score=222.62 Aligned_cols=174 Identities=19% Similarity=0.238 Sum_probs=128.8
Q ss_pred ccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC----HHHH--HhHceEEeccCC-Ccc-c
Q 003976 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ----LKWL--REQMGLVSQEPA-LFA-T 466 (782)
Q Consensus 395 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~----~~~l--R~~i~~V~Q~~~-lf~-~ 466 (782)
+++||++++|++++|||||||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..|++|+|++. ++. .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999999999987653 2333 567999999997 665 5
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc--eEEEeCCCCC
Q 003976 467 SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK--ILLLDEATSA 544 (782)
Q Consensus 467 Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~--illLDE~tsa 544 (782)
|++||+.++.....+ ...++.+ |...........|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d------------~~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD------------VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCS------------EEEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCH------------HHHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 999999875321000 0111111 22111112223588 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEec---------Ccchhh-hcCEEEEEeCCEE
Q 003976 545 LDAESELIVQRALEKIMSNRTTIVVAH---------RLSTVR-DVDTIMVLKNGQV 590 (782)
Q Consensus 545 lD~~~e~~i~~~l~~~~~~~T~i~iaH---------rl~~i~-~aD~I~vl~~G~i 590 (782)
+|+.++. +.+.+ ..+.|+|++|| .++.+. ..+.|..+..|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9998653 22222 24899999999 344443 3689999999864
No 85
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.84 E-value=2.8e-24 Score=217.15 Aligned_cols=168 Identities=15% Similarity=0.239 Sum_probs=133.1
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCCC-------------CCccEEEECCeeCCCcCHHHHHhHceEEeccCCCcccc
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYE-------------PTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATS 467 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~~-------------~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~T 467 (782)
+++|++++||||||||||||+++|.|+|+ |..|+ ++|.++..++.+.+|+.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999997 88898 699999999999999987 6999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH-HhccCCceEEEeCCCCCCC
Q 003976 468 IANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR-AVLRNPKILLLDEATSALD 546 (782)
Q Consensus 468 i~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR-Al~~~p~illLDE~tsalD 546 (782)
+.+|+ ||. ++++++++++.+.+.-+ .-.|+|+++.... ++ .|| +++.+|++++|||+|+++|
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 99998 774 57788888876432222 2346788776532 22 677 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHh
Q 003976 547 AESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 547 ~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~ 600 (782)
.++|+.|++.|.+..++ +.++| ++ ..+|+|+|+++ -..++++|.
T Consensus 139 ~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~ 182 (198)
T 1lvg_A 139 TETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLK 182 (198)
T ss_dssp CSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHH
Confidence 99999999999877654 45678 55 88999999875 234455554
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.84 E-value=2.2e-23 Score=211.77 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=110.1
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC-HHHHHhHceEEeccCCCccc-cHH
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWLREQMGLVSQEPALFAT-SIA 469 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~-~~~lR~~i~~V~Q~~~lf~~-Ti~ 469 (782)
++|+| .+|++|++++|+||||||||||+++|.|++++ |.+++. +...+ ....|+.++|++|++.+|.. |+.
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~-~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVS-ATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCC-EESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEccc-ccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 48899 79999999999999999999999999999964 444432 21111 11236789999999988865 677
Q ss_pred HHHhc-----CC-C--CCCHHHHHHHHH----------HhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 470 NNILL-----GK-E--DASMDRVIEAAK----------AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 470 eNi~~-----g~-~--~~~~~~i~~a~~----------~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
+|+.. ++ . ..+.+++.+.++ ..++.++....|. .|| |++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EEEE
Confidence 77632 10 0 112333333332 2233333333332 233 8999
Q ss_pred CCceEEEeCCCCCC----CHHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-hcCEEEEEe
Q 003976 532 NPKILLLDEATSAL----DAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLK 586 (782)
Q Consensus 532 ~p~illLDE~tsal----D~~~e~~i~~~l~~~~--~~~T~i~iaHrl~~i~-~aD~I~vl~ 586 (782)
+|++++|||||+++ |+..++.+.+.++++. .+.|+|+|||+++.+. .||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 6778899999998875 4799999999999886 499999984
No 87
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.82 E-value=4.4e-22 Score=217.76 Aligned_cols=194 Identities=13% Similarity=0.177 Sum_probs=147.1
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCc-------CHH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL-------QLK 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~-------~~~ 448 (782)
-++.+++++.|+.. ..+|+++ |+|++||+++|+||||||||||+++|.|+++|+.|.|.+.|.+.+++ ...
T Consensus 45 ~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 45 PLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp STTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 47889999999732 3499999 99999999999999999999999999999999999999999763221 112
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccc-cCCCCCCCHHHHHHHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQV-GEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~v-ge~G~~LSgGQkQRiaiAR 527 (782)
.+++.+.+++|.+ .+ ..+++..+.....+.++... .|.+..+ -+...+||+|| ||+++|
T Consensus 123 ~~~~~v~~~~~~~--------------~~--~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 123 TLSKCVLVVTTSD--------------RP--ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHTTEEEEEECTT--------------SC--HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhceEEEEECCC--------------CC--HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 2333444444421 11 13444444444444454332 2433221 24567899999 999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh---CCC-----eEEEEecCcchhhhcCEEEEEeCCEEEEecChhHH
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM---SNR-----TTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~~~---~~~-----T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL 599 (782)
+.+|++ |+++|+.....+.+.++++. .|. |++++||+++ -.-||++++|.+|+|+..|+.+++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 689988 99999999999999998875 366 8999999998 566999999999999999988776
Q ss_pred h
Q 003976 600 I 600 (782)
Q Consensus 600 ~ 600 (782)
.
T Consensus 254 ~ 254 (347)
T 2obl_A 254 N 254 (347)
T ss_dssp T
T ss_pred C
Confidence 3
No 88
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.82 E-value=1e-22 Score=204.13 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=122.0
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHH
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDR 483 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~ 483 (782)
|++++|+|||||||||++++|+|+++ ++| |.+||.++.++. .+++++|+++|+. +++ ++|+..- ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~--~~---- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRV--GL---- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEEC--CC----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcc--cc----
Confidence 78999999999999999999999999 999 999999987665 4688999999986 332 2222110 00
Q ss_pred HHHHHHHhhhHhHHhcCC-CCccccccCCCCCCCHHHHHHH-HHHH---HhccCCceEEEeC--CCCCCCHHHHHHHHHH
Q 003976 484 VIEAAKAANAHSFVEGLP-DGYQTQVGEGGTQLSGGQKQRI-AIAR---AVLRNPKILLLDE--ATSALDAESELIVQRA 556 (782)
Q Consensus 484 i~~a~~~a~~~~~i~~lp-~G~~t~vge~G~~LSgGQkQRi-aiAR---Al~~~p~illLDE--~tsalD~~~e~~i~~~ 556 (782)
..+ ...+..+|+.+..+|||||+++ +++| |+..+|+|||||| ||..+|....+.+.+.
T Consensus 67 ---------------~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 67 ---------------EPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ---------------CCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ---------------cCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 001 1234589999999999999999 6666 7899999999999 8888898876666666
Q ss_pred HHHHhCCCeEEE--Ee--cCcchhhhcCEEEEEeCCEEEEec
Q 003976 557 LEKIMSNRTTIV--VA--HRLSTVRDVDTIMVLKNGQVVESG 594 (782)
Q Consensus 557 l~~~~~~~T~i~--ia--Hrl~~i~~aD~I~vl~~G~ive~G 594 (782)
++ ..+|+|+ ++ ||.+ ..-+|+|..+++|+|++-.
T Consensus 132 l~---~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 132 LS---TPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HH---CSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred Hh---CCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 65 3456664 44 9886 5667888888999998753
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=2.1e-20 Score=225.64 Aligned_cols=165 Identities=22% Similarity=0.359 Sum_probs=120.7
Q ss_pred HHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCC-CHHHHHHHHHHhhhHhHHhcCC
Q 003976 423 MVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDA-SMDRVIEAAKAANAHSFVEGLP 501 (782)
Q Consensus 423 ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~-~~~~i~~a~~~a~~~~~i~~lp 501 (782)
+..+.+.|..|+|+++|++|.++....+.+.++++.+ +.+...+. ...++.+..+ ...+++..+
T Consensus 387 C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~------------~~l~~~~~~~~~~~~~~~~--~~~~~L~~v- 451 (916)
T 3pih_A 387 CGGRRLNREALSVKINGLNIHEFTELSISEELEFLKN------------LNLTEREREIVGELLKEIE--KRLEFLVDV- 451 (916)
T ss_dssp TCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS------------CCCCTTTTTTHHHHHHHHH--HHHHHHHTT-
T ss_pred cccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh------------ccCcHHHHHHHHhhHHHHH--HHHHHHHHc-
Confidence 4446778999999999998865443333333333221 11111100 0111111111 122344444
Q ss_pred CCcccc-ccCCCCCCCHHHHHHHHHHHHhccCCc--eEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhh
Q 003976 502 DGYQTQ-VGEGGTQLSGGQKQRIAIARAVLRNPK--ILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR 577 (782)
Q Consensus 502 ~G~~t~-vge~G~~LSgGQkQRiaiARAl~~~p~--illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~ 577 (782)
|++.. .+....+||||||||++|||||.++|+ +|||||||++||+...+.+.+.|+++. .|+|+|+|+|+++.+.
T Consensus 452 -gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~ 530 (916)
T 3pih_A 452 -GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIR 530 (916)
T ss_dssp -TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHH
T ss_pred -CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 44432 456677999999999999999999887 999999999999999999999999885 4899999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChhHHhhcC
Q 003976 578 DVDTIMVL------KNGQVVESGTHVDLISKG 603 (782)
Q Consensus 578 ~aD~I~vl------~~G~ive~G~~~eL~~~~ 603 (782)
.||+|++| ++|+|+.+|+++|+++..
T Consensus 531 ~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 531 NADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp TCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred hCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 99999999 999999999999998763
No 90
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.81 E-value=8.6e-25 Score=241.02 Aligned_cols=226 Identities=10% Similarity=0.006 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC-CC
Q 003976 295 ALLLWYAGILVRH-GDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITL-PK 372 (782)
Q Consensus 295 ~~~l~~G~~lv~~-g~~t~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~-~~ 372 (782)
+.+.++|++++.. |.+|.|++.+++.++.....+ .+......++.+..+.+|+..++ +|...+. ...... ..
T Consensus 49 v~v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~--~~~~~ir~~ 122 (361)
T 2gza_A 49 VFCERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHG--TISVTIRKP 122 (361)
T ss_dssp EEEEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTT--CCEEEEECC
T ss_pred EEEEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCC--CeEEEEEec
Confidence 3345567766665 789999987765544332211 11111122233344556777766 3322111 000000 11
Q ss_pred CcCcE---------EEEeEEEE---cCCCCCccc---------ccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC
Q 003976 373 LAGQI---------EFSEVCFA---YPSRPHMVF---------ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 431 (782)
Q Consensus 373 ~~g~i---------~~~~v~f~---y~~~~~~vL---------~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~ 431 (782)
..+.+ +|+||+|+ |+....++| +++||.|++|+.++|+||||||||||+++|.|+++|+
T Consensus 123 ~~~~itl~~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 123 SFTRRTLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp CCCCCCHHHHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred CCCCCCHHHHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 12345 89999999 964222366 9999999999999999999999999999999999999
Q ss_pred ccEEEECCeeCCCcCHHHHHhHceEEe-ccCCC---ccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCcccc
Q 003976 432 SGKILLDGHDLKSLQLKWLREQMGLVS-QEPAL---FATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 507 (782)
Q Consensus 432 ~G~I~i~g~di~~~~~~~lR~~i~~V~-Q~~~l---f~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~ 507 (782)
+|.|+++|. .++....+|+++++|+ |++.+ +..|+++||.++....++..+..+++.+++++++..+|.|++|.
T Consensus 203 ~g~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~ 280 (361)
T 2gza_A 203 QRLITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGS 280 (361)
T ss_dssp SCEEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSC
T ss_pred ceEEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeE
Confidence 999999985 5666666788999999 99886 78899999999865444444444555577889999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 003976 508 VGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 508 vge~G~~LSgGQkQRiaiARA 528 (782)
+++-+.+-..+..+|+.....
T Consensus 281 l~t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 281 ITSCHAGSCELTFERLALMVL 301 (361)
T ss_dssp EEEEECSSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHHh
Confidence 999888888999999987754
No 91
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.80 E-value=1.1e-19 Score=209.58 Aligned_cols=77 Identities=17% Similarity=0.339 Sum_probs=72.1
Q ss_pred CCC-CHHHHHHHHHHHHhccCC--ceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCE
Q 003976 513 TQL-SGGQKQRIAIARAVLRNP--KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 589 (782)
Q Consensus 513 ~~L-SgGQkQRiaiARAl~~~p--~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ 589 (782)
.+| |||||||++||||++.+| ++|||||||++||+.+...|.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 456 999999999999999999 99999999999999999999999998877999999999999999999999996653
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=3.4e-21 Score=222.72 Aligned_cols=166 Identities=13% Similarity=0.142 Sum_probs=119.4
Q ss_pred cccccceE-EeeCCCEEEEeCCCCCcHHHHHHH--HHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccH
Q 003976 392 MVFENLNF-SVDAGKTFAFVGPSGSGKSTIISM--VQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSI 468 (782)
Q Consensus 392 ~vL~~isl-~i~~G~~vaivG~sGsGKSTl~~l--l~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti 468 (782)
++|+|+|| .+++|++++|+||||||||||+++ +.|+++|.+|.|+++|.+. ..+....++++|+++|++...
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~---- 100 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE---- 100 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT----
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc----
Confidence 49999999 999999999999999999999999 6899999999999999883 334455678899999997531
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc-cCCceEEEeCCCCC---
Q 003976 469 ANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL-RNPKILLLDEATSA--- 544 (782)
Q Consensus 469 ~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~-~~p~illLDE~tsa--- 544 (782)
+|+.+-... ..++..++++..++.+ +.-.++++|- .+|++++|||||+.
T Consensus 101 -~~l~~~~~~-~~~~~~~~l~~~~l~~-------------------------~~~~~~~~LS~g~~~~lilDe~t~~~~~ 153 (525)
T 1tf7_A 101 -GKLFILDAS-PDPEGQEVVGGFDLSA-------------------------LIERINYAIQKYRARRVSIDSVTSVFQQ 153 (525)
T ss_dssp -TSEEEEECC-CCSSCCSCCSSHHHHH-------------------------HHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred -CcEEEEecC-cccchhhhhcccCHHH-------------------------HHHHHHHHHHHcCCCEEEECCHHHHHHh
Confidence 122211100 0000000111111111 2223333332 35889999999985
Q ss_pred --CCHHHHHHHHHHHHHHh-CCCeEEEEecCcchh---------hh-cCEEEEEeCCE
Q 003976 545 --LDAESELIVQRALEKIM-SNRTTIVVAHRLSTV---------RD-VDTIMVLKNGQ 589 (782)
Q Consensus 545 --lD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i---------~~-aD~I~vl~~G~ 589 (782)
+|+...+.+.+.++++. .|+|+|+|+|+++.+ +. ||+|++|++|+
T Consensus 154 ~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 154 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 58899999999988774 489999999999984 44 99999999954
No 93
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.79 E-value=9.7e-22 Score=199.52 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=114.7
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc---cHHHHHhc--C
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT---SIANNILL--G 475 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~---Ti~eNi~~--g 475 (782)
.++|+++||+||||||||||+++|.|++.| ++++|+|++.+++. |+++|+.+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999975 59999999998843 67777655 3
Q ss_pred CCC-CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCC-------CCH
Q 003976 476 KED-ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA-------LDA 547 (782)
Q Consensus 476 ~~~-~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsa-------lD~ 547 (782)
.+. .+.+++.++++..++.+++.. | +++...|+++. |+||+++||+++.+|+++++||||++ ||+
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~ 133 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDA 133 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEECS-----SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEEC
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCCC-----CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeC
Confidence 332 345678888887777666654 4 45544444432 56899999999999999999999999 999
Q ss_pred HHHHHHHHHHHHH--hCCCeEEEEecCc
Q 003976 548 ESELIVQRALEKI--MSNRTTIVVAHRL 573 (782)
Q Consensus 548 ~~e~~i~~~l~~~--~~~~T~i~iaHrl 573 (782)
.++..+.+.+.+. .+|+|++.++|+.
T Consensus 134 ~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 134 DADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998765 3689999999984
No 94
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.79 E-value=1.6e-21 Score=215.29 Aligned_cols=148 Identities=20% Similarity=0.319 Sum_probs=101.1
Q ss_pred ccccceEEeeC--CCEEEEeCCCCCcHHHHHHHHHcCCCCCc----cEEEE----CCeeCCCcCHHHHHhHceEEeccCC
Q 003976 393 VFENLNFSVDA--GKTFAFVGPSGSGKSTIISMVQRLYEPTS----GKILL----DGHDLKSLQLKWLREQMGLVSQEPA 462 (782)
Q Consensus 393 vL~~isl~i~~--G~~vaivG~sGsGKSTl~~ll~~~~~~~~----G~I~i----~g~di~~~~~~~lR~~i~~V~Q~~~ 462 (782)
+.+.|+++|++ |++++||||||||||||+++|.|+|+|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999999999 99987 46666 5566666 56999999999
Q ss_pred CccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCC--ccccc--------cCCCCCCCHHHHHHHHHHHHh---
Q 003976 463 LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDG--YQTQV--------GEGGTQLSGGQKQRIAIARAV--- 529 (782)
Q Consensus 463 lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G--~~t~v--------ge~G~~LSgGQkQRiaiARAl--- 529 (782)
+|++|++|||.++.++..+..............++..++.+ ++..+ .++|.++||||+||++++|++
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999999986544344444333333334444444322 33221 245556666666666666666
Q ss_pred cc--CCceEEEeCCC
Q 003976 530 LR--NPKILLLDEAT 542 (782)
Q Consensus 530 ~~--~p~illLDE~t 542 (782)
++ +++|+++||||
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 55 66666666665
No 95
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.78 E-value=1e-19 Score=194.65 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=123.9
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc-EEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 471 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G-~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eN 471 (782)
+|+++++.+++|++++|+||||||||||++.|++.+.|.+| .|.+.+.+ .+...+++++..+.|+..+ +..+|
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~~ 97 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSDS 97 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhccc
Confidence 89999999999999999999999999999999999999988 77655433 3566677776666555432 22344
Q ss_pred HhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHH-HHHHHHHHHhccCCceEEEeCCCC---C---
Q 003976 472 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ-KQRIAIARAVLRNPKILLLDEATS---A--- 544 (782)
Q Consensus 472 i~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQ-kQRiaiARAl~~~p~illLDE~ts---a--- 544 (782)
+..+. .+.++..++++ +.+...+-+ +.+....+|.+| +||+. |+|+..+|+++||||||+ +
T Consensus 98 l~~~~--~~~~~~~~~~~-----~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 98 LKREI--IENGKFDQWFD-----ELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH--HHHTHHHHHHH-----HHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred cccCC--CCHHHHHHHHH-----HHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 44332 12233333322 222222212 223334689999 77777 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHHh--CCCeEEEEecCc--c--------------------hh-hhcCEEEEEeCCEE
Q 003976 545 LDA-ESELIVQRALEKIM--SNRTTIVVAHRL--S--------------------TV-RDVDTIMVLKNGQV 590 (782)
Q Consensus 545 lD~-~~e~~i~~~l~~~~--~~~T~i~iaHrl--~--------------------~i-~~aD~I~vl~~G~i 590 (782)
+|. .....+.+.|+++. .|.|+|+++|.. + .+ ..||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 45567777887764 389999999995 4 44 45999999999985
No 96
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.78 E-value=1.6e-18 Score=189.46 Aligned_cols=75 Identities=27% Similarity=0.370 Sum_probs=68.2
Q ss_pred CCCCCHHHHH------HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEE
Q 003976 512 GTQLSGGQKQ------RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMV 584 (782)
Q Consensus 512 G~~LSgGQkQ------RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~v 584 (782)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 4679999999 7788999999999999999999999999999999998864 47899999999887788999999
Q ss_pred Ee
Q 003976 585 LK 586 (782)
Q Consensus 585 l~ 586 (782)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 95
No 97
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=1.8e-19 Score=216.10 Aligned_cols=153 Identities=22% Similarity=0.325 Sum_probs=117.4
Q ss_pred CCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCC-CCCHH-------HHHHHHHHhhhHhHHh
Q 003976 427 LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMD-------RVIEAAKAANAHSFVE 498 (782)
Q Consensus 427 ~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~-~~~~~-------~i~~a~~~a~~~~~i~ 498 (782)
-|.|....|+++|++|.+ +...||.|++.|... ..+.+ -+.+..++.. ++.
T Consensus 431 rl~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl~---~L~ 489 (972)
T 2r6f_A 431 RLKKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG---FLQ 489 (972)
T ss_dssp CBCTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHHH---HHH
T ss_pred ccCHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---Hhh
Confidence 356788889999987543 344578888877421 11221 1122222222 232
Q ss_pred cCCCCcccc-ccCCCCCCCHHHHHHHHHHHHhccCC--ceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcc
Q 003976 499 GLPDGYQTQ-VGEGGTQLSGGQKQRIAIARAVLRNP--KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLS 574 (782)
Q Consensus 499 ~lp~G~~t~-vge~G~~LSgGQkQRiaiARAl~~~p--~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~ 574 (782)
.+ |++.. ......+|||||||||+||+||..+| ++|||||||++||+...+.+.+.|+++. .|.|+|+|+|+++
T Consensus 490 ~v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~ 567 (972)
T 2r6f_A 490 NV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 567 (972)
T ss_dssp HH--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred hC--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 22 44432 45666799999999999999999985 9999999999999999999999999886 5899999999999
Q ss_pred hhhhcCEEEEE------eCCEEEEecChhHHhhc
Q 003976 575 TVRDVDTIMVL------KNGQVVESGTHVDLISK 602 (782)
Q Consensus 575 ~i~~aD~I~vl------~~G~ive~G~~~eL~~~ 602 (782)
+++.||+|++| ++|+|+.+|+++++.+.
T Consensus 568 ~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 568 TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp HHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred HHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 99999999999 79999999999999875
No 98
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.77 E-value=2.9e-19 Score=219.27 Aligned_cols=172 Identities=16% Similarity=0.212 Sum_probs=123.4
Q ss_pred CcEEEEe-----EEEEcCCCCCcccccceEEeeC-------CCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeC
Q 003976 375 GQIEFSE-----VCFAYPSRPHMVFENLNFSVDA-------GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL 442 (782)
Q Consensus 375 g~i~~~~-----v~f~y~~~~~~vL~~isl~i~~-------G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di 442 (782)
+.|+++| |++.|+++ ..+++|++|++++ |++++|+|||||||||+++.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 4599999 99999532 3599999999987 999999999999999999999 99863
Q ss_pred CCcCHHHHHhHce-EEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHH
Q 003976 443 KSLQLKWLREQMG-LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521 (782)
Q Consensus 443 ~~~~~~~lR~~i~-~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQ 521 (782)
+.++| ||||++. .-|+.|||.. + . ++.+.+. .| -.++|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~-r--i------------g~~d~~~---~~--------~stf~~em~~ 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFT-R--L------------GASDRIM---SG--------ESTFFVELSE 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEE-E--C------------C--------------------CHHHHHHHH
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHH-H--c------------CCHHHHh---hc--------hhhhHHHHHH
Confidence 35677 9999973 5577777632 1 1 1111111 12 2467777775
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHH-HHHHHHHHHHHh-C-CCeEEEEecCcchhhh-cCEEEEEeCCEEE--EecC
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAES-ELIVQRALEKIM-S-NRTTIVVAHRLSTVRD-VDTIMVLKNGQVV--ESGT 595 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~-e~~i~~~l~~~~-~-~~T~i~iaHrl~~i~~-aD~I~vl~~G~iv--e~G~ 595 (782)
+++||+++.+|+++||||||+++|+.. ...+.+.|+.+. + ++|+|++||.++.+.. +|++.|+ +|++. +.|+
T Consensus 859 -~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~ 936 (1022)
T 2o8b_B 859 -TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENE 936 (1022)
T ss_dssp -HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC----
T ss_pred -HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecC
Confidence 999999999999999999999999986 566777777764 3 8999999999998865 7998887 58887 5565
Q ss_pred hhH
Q 003976 596 HVD 598 (782)
Q Consensus 596 ~~e 598 (782)
.++
T Consensus 937 ~~~ 939 (1022)
T 2o8b_B 937 CED 939 (1022)
T ss_dssp ---
T ss_pred ccc
Confidence 443
No 99
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.76 E-value=3.7e-19 Score=205.68 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=116.4
Q ss_pred eEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHh-cCC
Q 003976 398 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNIL-LGK 476 (782)
Q Consensus 398 sl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~-~g~ 476 (782)
+..+++|++++|+||+|||||||++.+++...|. |+ +.+.+++|++. .++++|.. +|
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 4489999999999999999999999999999885 43 01456667652 35555543 22
Q ss_pred CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHH-----HHH
Q 003976 477 EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-----SEL 551 (782)
Q Consensus 477 ~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~-----~e~ 551 (782)
.+.+++ .. .|+..........|||||+||+++||++..+|++|||| ||++||.. ..+
T Consensus 333 --~~~~~~----~~-----------~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 333 --MDFEEM----ER-----------QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp --CCHHHH----HH-----------TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred --CCHHHH----Hh-----------CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 222221 11 12333334455689999999999999999999999999 99999999 888
Q ss_pred HHHHHHHHHh-CCCeEEEEecCc----------chhh-hcCEEEEEeCCE
Q 003976 552 IVQRALEKIM-SNRTTIVVAHRL----------STVR-DVDTIMVLKNGQ 589 (782)
Q Consensus 552 ~i~~~l~~~~-~~~T~i~iaHrl----------~~i~-~aD~I~vl~~G~ 589 (782)
.+.+.++.+. .|.|+|+|+|.. ..+. .||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8888877664 589999999998 5665 489999999987
No 100
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.76 E-value=3.1e-18 Score=193.04 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHhc----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCcchhhhcCEEEEEe
Q 003976 514 QLSGGQKQRIAIARAVL----RNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRDVDTIMVLK 586 (782)
Q Consensus 514 ~LSgGQkQRiaiARAl~----~~p~illLDE~tsalD~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i~~aD~I~vl~ 586 (782)
.||||||||++|||+++ ++||+|||||||++||+.....+.+.|++... +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 789999999998888999999996
No 101
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.75 E-value=1.7e-19 Score=197.78 Aligned_cols=166 Identities=16% Similarity=0.222 Sum_probs=123.2
Q ss_pred ccccc-eEEeeCCCEEEEeCCCCCcHHHHHHHHHcCC--CCCc----cE-EEECCeeCCCcCHHHHHhHceEEeccCCCc
Q 003976 393 VFENL-NFSVDAGKTFAFVGPSGSGKSTIISMVQRLY--EPTS----GK-ILLDGHDLKSLQLKWLREQMGLVSQEPALF 464 (782)
Q Consensus 393 vL~~i-sl~i~~G~~vaivG~sGsGKSTl~~ll~~~~--~~~~----G~-I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf 464 (782)
.|+++ ++.+++|++++|+||+|||||||++.+++.+ +|++ |+ |++|+.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999999 6776 67 999997652 256899999999999
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc-------cCCceEE
Q 003976 465 ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL-------RNPKILL 537 (782)
Q Consensus 465 ~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~-------~~p~ill 537 (782)
..++.+||.+..+ .+ |++|+|++.++++++ .+|+++|
T Consensus 193 ~~~v~~ni~~~~~-~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 193 PDEVLKHIYVARA-FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HHHHGGGEEEEEC-CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HHHHhhCEEEEec-CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 8899999988643 11 356788888888888 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHh--CCCeEEEEecCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 538 LDEATSALDAES------------ELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 538 LDE~tsalD~~~------------e~~i~~~l~~~~--~~~T~i~iaHrl~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
+||||+.+|++. -..+...|.++. .+.|+|+++|..+.... .+.+.+...|++++++.+..|.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 999999999863 133444445443 48899999998875542 2456778889999988877774
No 102
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.74 E-value=4e-18 Score=163.80 Aligned_cols=88 Identities=25% Similarity=0.323 Sum_probs=76.5
Q ss_pred Cccccc-----cCCCCCCCHHHHHHHHHH------HHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEe
Q 003976 503 GYQTQV-----GEGGTQLSGGQKQRIAIA------RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVA 570 (782)
Q Consensus 503 G~~t~v-----ge~G~~LSgGQkQRiaiA------RAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~ia 570 (782)
+|++.+ .....+||||||||++|| ||++.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 677765 345679999999999876 99999999999999999999999999999999874 479999999
Q ss_pred cCcchhhhcCEEEEE--eCCEE
Q 003976 571 HRLSTVRDVDTIMVL--KNGQV 590 (782)
Q Consensus 571 Hrl~~i~~aD~I~vl--~~G~i 590 (782)
|+......||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999766779999999 55643
No 103
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=7.1e-18 Score=203.13 Aligned_cols=136 Identities=24% Similarity=0.332 Sum_probs=106.4
Q ss_pred CCccccHHHHHhcCCC-CCCHHH------H-HHHHHHhhhHhHHhcCCCCcccc-ccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 462 ALFATSIANNILLGKE-DASMDR------V-IEAAKAANAHSFVEGLPDGYQTQ-VGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 462 ~lf~~Ti~eNi~~g~~-~~~~~~------i-~~a~~~a~~~~~i~~lp~G~~t~-vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
.++..||.|++.|... ..+.++ + .+..++. +++..+ |++.. ......+|||||||||+||+||..+
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl---~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL---GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH---HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH---HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhC
Confidence 4567799999998432 122211 1 1112221 223322 44432 4566679999999999999999999
Q ss_pred --CceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCcchhhhcCEEEEE------eCCEEEEecChhHHhhc
Q 003976 533 --PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGTHVDLISK 602 (782)
Q Consensus 533 --p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i~~aD~I~vl------~~G~ive~G~~~eL~~~ 602 (782)
|++|||||||++||+...+.+.+.|+++. .|+|+|+|+|++++++.||+|++| ++|+|+.+|+++++.+.
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 58999999999999999999999998875 589999999999999999999999 79999999999999875
No 104
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.74 E-value=4e-20 Score=192.66 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=106.9
Q ss_pred CcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHH
Q 003976 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 470 (782)
Q Consensus 391 ~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~e 470 (782)
..+|+|+||++++|+++||+||+||||||++++|.+++ |.+.++ ..++.+++++|++....-|..+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 34999999999999999999999999999999999987 555444 3577899999997433459999
Q ss_pred HHhcCCC-------C-CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCC
Q 003976 471 NILLGKE-------D-ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 542 (782)
Q Consensus 471 Ni~~g~~-------~-~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~t 542 (782)
|+.+... + .+.+++.+.++ .+.++.+..+ ..||+||+||+++ ++++.+|+++|||||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~---------~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~ 143 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLK---------NIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGIL 143 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHH---------HHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECTT
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHH---------HHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCcc
Confidence 9875321 1 12222222222 2223444443 4799999999998 6999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchh-hh-cCEEEEEeCCEEEEecChhHHhh
Q 003976 543 SALDAESELIVQRALEKIMSNRTTIVVAHRLSTV-RD-VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 543 salD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i-~~-aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
...|.. +.++ .+.|++++||....+ +. ++.+ ++|+ +.+++.+
T Consensus 144 ~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 144 VFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred ccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 877764 2222 478999999974333 33 3334 6675 6677764
No 105
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.73 E-value=5e-19 Score=211.08 Aligned_cols=158 Identities=20% Similarity=0.250 Sum_probs=120.0
Q ss_pred cCcEEEEeEEEEcCC---CCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-CCccEEEECCeeCCCcCHHH
Q 003976 374 AGQIEFSEVCFAYPS---RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-PTSGKILLDGHDLKSLQLKW 449 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~---~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-~~~G~I~i~g~di~~~~~~~ 449 (782)
.+.|++++. ++|- ....+++|+||+ |++++|+|||||||||+++++.|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 567999988 4553 233599999999 99999999999999999999999874 7777652 1 0
Q ss_pred HHhHceEEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 450 LREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
.+..+++|+| +|.. ++.||+..| +|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g---------------------------------------~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG---------------------------------------KSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C---------------------------------------CSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHhc---------------------------------------ccHHHHHHHHHHHH
Confidence 1346888887 5553 677766432 58899999999999
Q ss_pred h--ccCCceEEEeCC---CCCCCHHHH-HHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEe
Q 003976 529 V--LRNPKILLLDEA---TSALDAESE-LIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 593 (782)
Q Consensus 529 l--~~~p~illLDE~---tsalD~~~e-~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~ 593 (782)
+ +.+|+++||||| ||++|+.+. ..+.+.|.+ .|+|+|++||..+....+ .-.++++++...
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEEE
Confidence 9 999999999999 999999875 578888876 589999999998876655 223455665443
No 106
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.73 E-value=1.2e-18 Score=178.28 Aligned_cols=148 Identities=17% Similarity=0.249 Sum_probs=104.8
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-------CccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHH
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-------TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 472 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-------~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi 472 (782)
-+++|++++|+||||||||||+++|+|.+.| ..|.|.+++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 455888888653 11 2467788888888888999999
Q ss_pred hcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh-------ccCCceEEEeCCCCCC
Q 003976 473 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV-------LRNPKILLLDEATSAL 545 (782)
Q Consensus 473 ~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl-------~~~p~illLDE~tsal 545 (782)
.+..+. +..+ |++++..++++ ..+|++++|||||+.+
T Consensus 95 ~~~~~~-~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAF-NSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECC-SHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecC-ChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 886542 2111 12222222222 3489999999999999
Q ss_pred CHH-------HH-----HHHHHHHHHHh--CCCeEEEEecCcc----hhhh-cCEEEEEeCCE
Q 003976 546 DAE-------SE-----LIVQRALEKIM--SNRTTIVVAHRLS----TVRD-VDTIMVLKNGQ 589 (782)
Q Consensus 546 D~~-------~e-----~~i~~~l~~~~--~~~T~i~iaHrl~----~i~~-aD~I~vl~~G~ 589 (782)
|++ .+ ..+.+.|.++. .|.|+|+|+|..+ .+.. ||++++|++|+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 984 22 24555565543 3899999999444 4655 79999998753
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.73 E-value=1.9e-20 Score=219.65 Aligned_cols=191 Identities=18% Similarity=0.294 Sum_probs=125.0
Q ss_pred cEEEEeEEEEcCCCCCcccccc----------eEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-CccEEEECCeeCCC
Q 003976 376 QIEFSEVCFAYPSRPHMVFENL----------NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-TSGKILLDGHDLKS 444 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~i----------sl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-~~G~I~i~g~di~~ 444 (782)
.++++|+++.|+....++|+.+ ++++|. +|||||||||||||+++|.|++.| ++|.|+++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5889999999964322345444 367765 999999999999999999999988 79999999999632
Q ss_pred cC---HHHHHhHceEEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHH
Q 003976 445 LQ---LKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK 520 (782)
Q Consensus 445 ~~---~~~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQk 520 (782)
.+ ...+|+.|+|++|++.+++. |+++||.+.. .. +... +..+| +
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~~------~~~~-----------~~~~s---~ 134 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------NA------IAGE-----------GMGIS---H 134 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------HH------HHCS-----------SSCCC---S
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------HH------hcCC-----------ccccc---h
Confidence 22 34678999999999988764 9999986531 00 1000 11111 2
Q ss_pred HHHHHHHHhccCCceEEEeCC------CCCCCHHHHHHHHHHHHHHhC---CCeEEEEecCcchh--------hh-----
Q 003976 521 QRIAIARAVLRNPKILLLDEA------TSALDAESELIVQRALEKIMS---NRTTIVVAHRLSTV--------RD----- 578 (782)
Q Consensus 521 QRiaiARAl~~~p~illLDE~------tsalD~~~e~~i~~~l~~~~~---~~T~i~iaHrl~~i--------~~----- 578 (782)
+++.++.+...+|+++++||| |++||+..++.+.+.+++..+ +-++++++|.++.. +.
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g 214 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEG 214 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSC
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcC
Confidence 445555566678999999999 999999999999999998632 45778889997632 22
Q ss_pred cCEEEEEeCCEEEEecChhHHhh
Q 003976 579 VDTIMVLKNGQVVESGTHVDLIS 601 (782)
Q Consensus 579 aD~I~vl~~G~ive~G~~~eL~~ 601 (782)
...|+|+.++.+++.|+.+++.+
T Consensus 215 ~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 215 DRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp CSEEEEEECGGGSSSSSTTCCCC
T ss_pred CceEEEecchhhcCcccHHHHHH
Confidence 35799999999999998766543
No 108
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.73 E-value=1.4e-19 Score=182.69 Aligned_cols=169 Identities=17% Similarity=0.226 Sum_probs=108.0
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCC-----CCCccEEEE-------CCeeCCC
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY-----EPTSGKILL-------DGHDLKS 444 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~-----~~~~G~I~i-------~g~di~~ 444 (782)
|+++|++|+|+ .++|++ |++++|.+++|+|++|||||||++.|.|.. .|+.|.+.. ++..+.+
T Consensus 4 l~~~~~~~~~~---~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMS---APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEE---ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheee---cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 78999999996 248888 899999999999999999999999999998 888888765 2333322
Q ss_pred cC-----------HHHHHhHceEEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCC
Q 003976 445 LQ-----------LKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512 (782)
Q Consensus 445 ~~-----------~~~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G 512 (782)
.+ .+.+++.++++.|+...+++ ++..|+..+.. ..++++.+.++. ..+|. -.++.+-
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~-------~~~~~---~~v~nK~ 147 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD-------SNIAV---LVLLTKA 147 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH-------TTCCE---EEEEECG
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHHHH-------cCCCe---EEEEecc
Confidence 11 24566677777776544443 33334433321 111223222221 12221 2246666
Q ss_pred CCCCHHHHHH-HHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 003976 513 TQLSGGQKQR-IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561 (782)
Q Consensus 513 ~~LSgGQkQR-iaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~ 561 (782)
..+|+||||| +..||+++++|+++++||||||+|..+...+.+.|.+..
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 6899999999 899999999999999999999999999999999988764
No 109
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.73 E-value=2.1e-18 Score=185.26 Aligned_cols=149 Identities=21% Similarity=0.212 Sum_probs=105.1
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC----HHHH--HhHceEEeccCCCccc-cHHHHHhcC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ----LKWL--REQMGLVSQEPALFAT-SIANNILLG 475 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~----~~~l--R~~i~~V~Q~~~lf~~-Ti~eNi~~g 475 (782)
+|++++|||||||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..+++|+|++.++.. |+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999987654 2233 4679999999988765 889998653
Q ss_pred CCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCc--eEEEeCCCCCCCHHHHHHH
Q 003976 476 KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK--ILLLDEATSALDAESELIV 553 (782)
Q Consensus 476 ~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~--illLDE~tsalD~~~e~~i 553 (782)
.. .+.+..+...+...+. ....++..++||.+||||+..+|+ +|.|| |+++.| +
T Consensus 181 ~~-------------~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 181 KA-------------RGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp HH-------------HTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred Hh-------------CCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 10 1111112122211111 112356777999999999999999 44455 444433 3
Q ss_pred HHHHHHHh--CCCeEEEEecCcch
Q 003976 554 QRALEKIM--SNRTTIVVAHRLST 575 (782)
Q Consensus 554 ~~~l~~~~--~~~T~i~iaHrl~~ 575 (782)
.+.+++.. .+.|+|++||.-.+
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHcCCcEEEEECCccc
Confidence 33343332 37899999997654
No 110
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.72 E-value=2e-19 Score=186.39 Aligned_cols=181 Identities=15% Similarity=0.115 Sum_probs=113.1
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHH--cCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ--RLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~--~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
++++++++.|+.- +.+|.+ .|++|++++|+||||||||||+++|+ +..++.+|.+.+++.+..+ .....++.+
T Consensus 7 ~~~~~i~tg~~~l-D~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (251)
T 2ehv_A 7 QPVRRVKSGIPGF-DELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASF 81 (251)
T ss_dssp -CCCEECCSCTTT-GGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTT
T ss_pred cccceeecCCHhH-HHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHc
Confidence 5566677766532 124433 79999999999999999999999999 7767788888888754321 233345678
Q ss_pred eEEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 455 GLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 455 ~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
++++|++..+.. ++.++....... ..++ .+. .. ...+-++.++...+..-..+|
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~---------~~----~~~~~~~~~~~~~~~l~~~~p 136 (251)
T 2ehv_A 82 GWDFEKYEKEGKIAIVDGVSSVVGL-PSEE-----------KFV---------LE----DRFNVDNFLRYIYRVVKAINA 136 (251)
T ss_dssp TCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHHTTC
T ss_pred CCChHHHhhcCCEEEEEcccccccc-cccc-----------cee---------cc----CcccHHHHHHHHHHHHHhhCC
Confidence 888887533321 333322211000 0000 000 00 012234444444444445799
Q ss_pred ceEEEeCCCCCCC-----HHHHHHHHHHHHHHh-CCCeEEEEecCcchh----------hhc-CEEEEEeC
Q 003976 534 KILLLDEATSALD-----AESELIVQRALEKIM-SNRTTIVVAHRLSTV----------RDV-DTIMVLKN 587 (782)
Q Consensus 534 ~illLDE~tsalD-----~~~e~~i~~~l~~~~-~~~T~i~iaHrl~~i----------~~a-D~I~vl~~ 587 (782)
++++|||||+.+| +..++.+.+.++.+. .|+|+|++||.++.+ ..| |+|++|++
T Consensus 137 ~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 137 KRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp SEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 9999999999997 556666887777664 489999999999886 457 99999974
No 111
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.72 E-value=2.2e-17 Score=200.37 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=120.5
Q ss_pred CcEEEEeEEEEcCCC---CCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHH--------HcCCCCCccEEEECCeeCC
Q 003976 375 GQIEFSEVCFAYPSR---PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--------QRLYEPTSGKILLDGHDLK 443 (782)
Q Consensus 375 g~i~~~~v~f~y~~~---~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll--------~~~~~~~~G~I~i~g~di~ 443 (782)
+.|++++...-+-.. ...+++|++|++++|++++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888875544221 23499999999999999999999999999999999 55555543321
Q ss_pred CcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 444 SLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 444 ~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
++.+. .+|. .+|. .+. -...+|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig~-----------------~d~--------------l~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVGA-----------------GDS--------------QLKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcCc-----------------hhh--------------HHHhHhhhHHHHH
Confidence 11000 0111 0110 000 0135788888888
Q ss_pred HHHHHh--ccCCceEEEeCCCCCCCHHHHHHH-HHHHHHHh--CCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhH
Q 003976 524 AIARAV--LRNPKILLLDEATSALDAESELIV-QRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVD 598 (782)
Q Consensus 524 aiARAl--~~~p~illLDE~tsalD~~~e~~i-~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~e 598 (782)
.+|+++ +.+|+++||||||+++|+.....+ ...++.+. .|+|+|++||..+....||++..+++|++...++.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999977666 55555554 3899999999998888899999999999999888777
Q ss_pred Hh
Q 003976 599 LI 600 (782)
Q Consensus 599 L~ 600 (782)
+.
T Consensus 811 l~ 812 (934)
T 3thx_A 811 LT 812 (934)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 112
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.71 E-value=5.4e-20 Score=196.46 Aligned_cols=129 Identities=11% Similarity=0.061 Sum_probs=97.3
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCC---C
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED---A 479 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~---~ 479 (782)
++.+++|+|+|||||||++++|.+++.+. | .+ ++.+.+|+||+++|+.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~---------~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GG---------EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GG---------GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CC---------CceEEEeccccccCChHHHHHHhccccccchh
Confidence 56799999999999999999999999874 2 00 3456667999999999999999876421 1
Q ss_pred CHHHHHHHHHHhhhHhHHhcCCCCcccc------ccCCCCCCCHHHHHHHHHH--HHhccCCceEEEeCCCCCCCHHH
Q 003976 480 SMDRVIEAAKAANAHSFVEGLPDGYQTQ------VGEGGTQLSGGQKQRIAIA--RAVLRNPKILLLDEATSALDAES 549 (782)
Q Consensus 480 ~~~~i~~a~~~a~~~~~i~~lp~G~~t~------vge~G~~LSgGQkQRiaiA--RAl~~~p~illLDE~tsalD~~~ 549 (782)
......++.+...+.+++..|++|++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 1001122233456788999999998764 5567889999999999998 666 999999999999999864
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.71 E-value=2.3e-18 Score=188.86 Aligned_cols=147 Identities=20% Similarity=0.253 Sum_probs=110.2
Q ss_pred EeEEEEcCCCCCcccccceE-------EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC-ccEEEECCeeCCCcCHHHHH
Q 003976 380 SEVCFAYPSRPHMVFENLNF-------SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-SGKILLDGHDLKSLQLKWLR 451 (782)
Q Consensus 380 ~~v~f~y~~~~~~vL~~isl-------~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~-~G~I~i~g~di~~~~~~~lR 451 (782)
.+++++|.....+.|+++.+ .+++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++. +. ++
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---hh
Confidence 57888885443347888876 77899999999999999999999999999997 567755444432 22 23
Q ss_pred hHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 452 EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 452 ~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
...++++|.+.... ..+..+ +|||||..
T Consensus 168 ~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~~ 195 (356)
T 3jvv_A 168 SKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALRE 195 (356)
T ss_dssp CSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTTS
T ss_pred ccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhhh
Confidence 34566666543211 011111 99999999
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCC
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNG 588 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G 588 (782)
+|++++||||| |.++.+.+.++ ...|+|+++++|..+.+..+||+++|..|
T Consensus 196 ~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 196 DPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 99999999999 77775554444 34699999999999999889999999665
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.68 E-value=1.6e-18 Score=193.59 Aligned_cols=166 Identities=14% Similarity=0.187 Sum_probs=101.7
Q ss_pred CcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 375 g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
+.|.++|++++|+.. .+++|+||+| +|||+||||||||++.|.|...|..| .+|.++...+ ...++.+
T Consensus 10 ~~l~~~~l~~~y~~~--~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTTT--TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECCE--EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeE
Confidence 569999999999643 4999999998 99999999999999999999886655 2343332111 1113568
Q ss_pred eEEeccCCCc-cccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC
Q 003976 455 GLVSQEPALF-ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533 (782)
Q Consensus 455 ~~V~Q~~~lf-~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p 533 (782)
++++|++.++ .-||.||+.++.. .+.++.++. +.+++.. .++.+++||++||||++++|
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d~ 137 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDA-VDNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPDN 137 (418)
T ss_dssp ECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC
T ss_pred EEEEecCCcccceeeeechhhhhh-ccchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccCC
Confidence 9999998877 5699999988764 221111111 2233321 34556788999999999999
Q ss_pred c---eEEEeCCC-CCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 003976 534 K---ILLLDEAT-SALDAESELIVQRALEKIMSNRTTIVVAHRLSTV 576 (782)
Q Consensus 534 ~---illLDE~t-salD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i 576 (782)
+ +|++|||| ++||+.... .++.+..+.++|+|.|+.+.+
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~~----~lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDIE----FMKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHHH----HHHHHTTTSEEEEEEESTTSS
T ss_pred CeeEEEEEecCcccCCCHHHHH----HHHHHhccCcEEEEEEcccCc
Confidence 9 99999999 699988642 333444578999999987654
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.67 E-value=1.3e-16 Score=157.16 Aligned_cols=79 Identities=23% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCCCCHHHHHHHHHHHHhc----cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEE--
Q 003976 512 GTQLSGGQKQRIAIARAVL----RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL-- 585 (782)
Q Consensus 512 G~~LSgGQkQRiaiARAl~----~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl-- 585 (782)
...||||||||++||||++ ++||++||||||++||+.+++.+.+.|+++.++.++|+|||+..+...||+|+.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 4689999999999999996 5679999999999999999999999999988889999999999999999999855
Q ss_pred eCCEE
Q 003976 586 KNGQV 590 (782)
Q Consensus 586 ~~G~i 590 (782)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 56653
No 116
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.66 E-value=1.6e-18 Score=186.33 Aligned_cols=163 Identities=16% Similarity=0.122 Sum_probs=80.6
Q ss_pred EeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC-CCCCccEEEECCeeCCCcCHHHHHhHceEEe
Q 003976 380 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL-YEPTSGKILLDGHDLKSLQLKWLREQMGLVS 458 (782)
Q Consensus 380 ~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~-~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~ 458 (782)
+|+++.|... .+++|++|+| +||||||+|||||++.|.|. ..|++| |.++|.++.. ... ++.+++++
T Consensus 2 ~~l~~~~~~~--~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~~--~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TVQ--IEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECCE--EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cce--EeeEEEEe
Confidence 4788888643 4999999988 99999999999999999998 889999 9999987754 221 46799999
Q ss_pred ccCCCc-cccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEE
Q 003976 459 QEPALF-ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 537 (782)
Q Consensus 459 Q~~~lf-~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~ill 537 (782)
|++.++ .-|+.||..+|......++.....+. +.+. ++. .-.++|||||||+++|||+. +++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~-------~~~----~~~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQ-------FER----YLHDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp C---CCEEEEEEEEC-----------CTTHHHH--HHHH-------HHH----HHHHHTSSCCTTCCCCCCCE----EEE
T ss_pred cCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHH-------HHH----HHHHhCHHhhhhhhhhhhhh----eee
Confidence 987665 45888888776431111111111111 1111 111 12468999999999999986 999
Q ss_pred EeCCCCC-CCHHHHHHHHHHHHHHhC--CCeEEEEecCcch
Q 003976 538 LDEATSA-LDAESELIVQRALEKIMS--NRTTIVVAHRLST 575 (782)
Q Consensus 538 LDE~tsa-lD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~ 575 (782)
+||||++ ||+... +.++++.+ +.++|+..|++.+
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 9999986 999874 33444433 5577777888754
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.63 E-value=2.4e-16 Score=161.03 Aligned_cols=163 Identities=13% Similarity=0.074 Sum_probs=114.4
Q ss_pred ccccceE-EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHh---HceEEeccCCCccccH
Q 003976 393 VFENLNF-SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE---QMGLVSQEPALFATSI 468 (782)
Q Consensus 393 vL~~isl-~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~---~i~~V~Q~~~lf~~Ti 468 (782)
.|+++.. .+++|+.++|+||+|||||||++.|++...+.+|.|.+.+.+. +.+.+++ .+++.+|+...
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----- 82 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE----- 82 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT-----
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh-----
Confidence 7888888 8999999999999999999999999999888888888876544 2333332 34544443210
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHHHHHHHHHHHHhccCCc--eEEEeCCCCCC
Q 003976 469 ANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRIAIARAVLRNPK--ILLLDEATSAL 545 (782)
Q Consensus 469 ~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgGQkQRiaiARAl~~~p~--illLDE~tsal 545 (782)
+++.+- ......+. -.+- ...|.+|.++...+.+...+|+ ++++||||+.+
T Consensus 83 -~~~~~~----------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 83 -KKLIII----------------------DALMKEKEDQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp -TTEEEE----------------------ECCC----CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred -CCEEEE----------------------eccccccCceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 011110 00000000 0011 1348999998888888778999 99999999888
Q ss_pred --CHHHHHHHHHHHHHHh--CCCeEEEEecCc--------chhh-hcCEEEEEeCCE
Q 003976 546 --DAESELIVQRALEKIM--SNRTTIVVAHRL--------STVR-DVDTIMVLKNGQ 589 (782)
Q Consensus 546 --D~~~e~~i~~~l~~~~--~~~T~i~iaHrl--------~~i~-~aD~I~vl~~G~ 589 (782)
|+.....+.+.|+++. .|.|+|+++|.. ..+. .||+|++|++.+
T Consensus 137 ~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9988888888887763 488999999998 3454 489999998754
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.62 E-value=2.5e-17 Score=168.81 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=106.3
Q ss_pred EEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC--CccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc-cH----HHH
Q 003976 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP--TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SI----ANN 471 (782)
Q Consensus 399 l~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~--~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~-Ti----~eN 471 (782)
-..++|++++|+||||||||||+++|.|+++| ..|+|.+.+.+.+. ..++.++|++|++.+|.. |+ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35789999999999999999999999999986 78999999987654 235689999999988876 44 355
Q ss_pred HhcCCCC--CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHH
Q 003976 472 ILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549 (782)
Q Consensus 472 i~~g~~~--~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~ 549 (782)
+.+.... .+.++ ++.++.+++++||| ||+.+
T Consensus 87 ~~~~~~~yg~~~~~------------------------------------------v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREA------------------------------------------IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHH------------------------------------------HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHH------------------------------------------HHHHHhcCCeEEEE-----ECHHH
Confidence 5442110 11112 23334447999999 99999
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 003976 550 ELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602 (782)
Q Consensus 550 e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~G~~~eL~~~ 602 (782)
.+.+.+.+. +++|+++++|+++.++. |+ +++| +++.+++.++
T Consensus 120 ~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 120 AQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp HHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred HHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 999998875 58899999999999876 43 6777 6788887653
No 119
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.60 E-value=5.7e-16 Score=187.47 Aligned_cols=168 Identities=18% Similarity=0.228 Sum_probs=108.8
Q ss_pred CcEEEEeEEEEc-----CCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH
Q 003976 375 GQIEFSEVCFAY-----PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW 449 (782)
Q Consensus 375 g~i~~~~v~f~y-----~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~ 449 (782)
+.|.+++...-. +.....|++|+||++++|++++|+|||||||||+++++.+.. .
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~--------------------~ 698 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT--------------------I 698 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH--------------------H
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH--------------------H
Confidence 357777754322 112234999999999999999999999999999999986431 1
Q ss_pred HHhHceEEeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 450 LREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 450 lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
+.+.-.+||++..-+. +.++| ...+ |..-.+..+-..+|+|++|+..|+|+
T Consensus 699 ~aq~g~~vpa~~~~i~--~~d~i------------------------~~~i--g~~d~l~~~~stfs~em~~~~~il~~- 749 (918)
T 3thx_B 699 MAQIGSYVPAEEATIG--IVDGI------------------------FTRM--GAADNIYKGRSTFMEELTDTAEIIRK- 749 (918)
T ss_dssp HHHHTCCBSSSEEEEE--CCSEE------------------------EEEC------------CCHHHHHHHHHHHHHH-
T ss_pred HhhcCccccchhhhhh--HHHHH------------------------HHhC--ChHHHHHHhHHHhhHHHHHHHHHHHh-
Confidence 1111223443321000 00000 0000 11111112235789999999999999
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHH-HHHHHHh--CCCeEEEEecCcchhhhcCEEEE-EeCCEEE
Q 003976 530 LRNPKILLLDEATSALDAESELIVQ-RALEKIM--SNRTTIVVAHRLSTVRDVDTIMV-LKNGQVV 591 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~-~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~v-l~~G~iv 591 (782)
+.+|+++||||||+++|+.....+. ..++.+. .|+|+|++||.++..+.||+.-- +.++++.
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~ 815 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMG 815 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEE
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEE
Confidence 8999999999999999999777776 5555552 48999999999988777765431 4455543
No 120
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.60 E-value=4.1e-19 Score=180.35 Aligned_cols=115 Identities=15% Similarity=0.171 Sum_probs=90.2
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhc----CC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILL----GK 476 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~----g~ 476 (782)
.++|++++|+||||||||||+++|.|+++|. | ..+++|+|+.+.++.+..+|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999986 4 14788888888888877777642 12
Q ss_pred CCCCHHHHHHHHHHhhhHhHHhcCCCC--ccccccCCCCCCCHHHHHHHHHH-HHhccCCceEEEeCCC
Q 003976 477 EDASMDRVIEAAKAANAHSFVEGLPDG--YQTQVGEGGTQLSGGQKQRIAIA-RAVLRNPKILLLDEAT 542 (782)
Q Consensus 477 ~~~~~~~i~~a~~~a~~~~~i~~lp~G--~~t~vge~G~~LSgGQkQRiaiA-RAl~~~p~illLDE~t 542 (782)
+.. .+...+.+++..|+.| +++++.++|..+||||+||+++| |+++.+++++++|||.
T Consensus 80 ~~~--------~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 PET--------FDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp GGG--------BCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred Cch--------hhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 211 1122334445555544 78889999999999999999999 9999999999999985
No 121
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.59 E-value=1.2e-17 Score=180.72 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=112.2
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCC--------CCCccEEEECCeeCCCcC---------------HHHHHhHceEE---e
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLY--------EPTSGKILLDGHDLKSLQ---------------LKWLREQMGLV---S 458 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~--------~~~~G~I~i~g~di~~~~---------------~~~lR~~i~~V---~ 458 (782)
++++|+|++||||||+++.|+|++ .|+.|+|.+||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 889999999999998764 35678889988 7
Q ss_pred ccCCC-ccccHHHHHhcCCCCCCHHHH---HHHHHHhhhHhHHh--cCCCCccccccCCCCCCCHHHHHHHHHHHHhccC
Q 003976 459 QEPAL-FATSIANNILLGKEDASMDRV---IEAAKAANAHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532 (782)
Q Consensus 459 Q~~~l-f~~Ti~eNi~~g~~~~~~~~i---~~a~~~a~~~~~i~--~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~ 532 (782)
|++.+ |+.++.||..++.|..-...+ .+..+...+...+. .+.+..+.. .+|||||+||...+|+++.+
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-----~~ls~g~~Q~~~ad~ill~k 159 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-----NQFTIAQSQVGYADRILLTK 159 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-----HHCHHHHHHHHTCSEEEEEC
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-----hhchHHHHHHHhCCEEEEEC
Confidence 88764 678999999888652100111 11111111211111 111111111 26899999999999999999
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 003976 533 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 574 (782)
Q Consensus 533 p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~ 574 (782)
|+++ ||| +.+.+.|+++.++.|+++++|+..
T Consensus 160 ~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 160 TDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp TTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred cccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 9987 888 677778887777899999999743
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.58 E-value=4.8e-17 Score=161.94 Aligned_cols=138 Identities=17% Similarity=0.087 Sum_probs=91.8
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCC
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDA 479 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~ 479 (782)
.+++|+.++|+|||||||||++++|.+. |..|.|.+||.++..... -++.++|++|++. .+.|+.+|+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~~-- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVAG-- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHHH--
Confidence 4789999999999999999999999998 778999999987643221 1344788888765 45688898865311
Q ss_pred CHHHHHHHHHHhhhHhHHhcCCC--Ccccc--ccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHH
Q 003976 480 SMDRVIEAAKAANAHSFVEGLPD--GYQTQ--VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555 (782)
Q Consensus 480 ~~~~i~~a~~~a~~~~~i~~lp~--G~~t~--vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~ 555 (782)
. .. ..+-...++.+.. +++.. .+.....+|+||+||+++||++.++|+++ +|++..+.+.+
T Consensus 78 ----~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 78 ----R--YA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ----H--HH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ----H--Hh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 0 00 0010001111110 11111 13344679999999999999999999987 57776666655
Q ss_pred HHHH
Q 003976 556 ALEK 559 (782)
Q Consensus 556 ~l~~ 559 (782)
.++.
T Consensus 143 ~~~~ 146 (191)
T 1zp6_A 143 QFAD 146 (191)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 5543
No 123
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.58 E-value=2.7e-15 Score=152.27 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=98.1
Q ss_pred ccccceE-EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHH
Q 003976 393 VFENLNF-SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 471 (782)
Q Consensus 393 vL~~isl-~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eN 471 (782)
.|+++.. -+++|++++|+||+||||||+++.+++ .+..+.++++..+ ..+.+.+++.. +
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~~----~------------ 67 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQMA----E------------ 67 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHHH----H------------
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHHH----H------------
Confidence 5677665 699999999999999999999999999 4444555555432 12223222210 0
Q ss_pred HhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHH--HHHHHHHHHHhccC-CceEEEeCCCCCCCHH
Q 003976 472 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG--QKQRIAIARAVLRN-PKILLLDEATSALDAE 548 (782)
Q Consensus 472 i~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgG--QkQRiaiARAl~~~-p~illLDE~tsalD~~ 548 (782)
.++ .+.+++ ...+ .+ ..+|++ |+|+++.+|+++++ |+++++||||+.+|+.
T Consensus 68 -~~~---~~~~~~------------~~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 68 -TRG---LNPEEA------------LSRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp -TTT---CCHHHH------------HHHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred -hcC---CChHHH------------hhcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 011 112211 1110 01 122333 47899999999986 9999999999999985
Q ss_pred HH--------HHHHHHHHHHhC--CCeEEEEecCcc-------------hh-hhcCEEEEEeCC
Q 003976 549 SE--------LIVQRALEKIMS--NRTTIVVAHRLS-------------TV-RDVDTIMVLKNG 588 (782)
Q Consensus 549 ~e--------~~i~~~l~~~~~--~~T~i~iaHrl~-------------~i-~~aD~I~vl~~G 588 (782)
.+ ..+.+.|+++.+ +.|+|+++|... .+ ..||.|++|++.
T Consensus 122 ~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 122 ENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 32 334445665543 889999999876 23 458999999865
No 124
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.56 E-value=8.4e-16 Score=184.37 Aligned_cols=165 Identities=16% Similarity=0.184 Sum_probs=110.4
Q ss_pred CcEEEEeEEEEcCC-----CCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-CccEEEECCeeCCCcCHH
Q 003976 375 GQIEFSEVCFAYPS-----RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-TSGKILLDGHDLKSLQLK 448 (782)
Q Consensus 375 g~i~~~~v~f~y~~-----~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-~~G~I~i~g~di~~~~~~ 448 (782)
+.|++++.. +|- ....+++|+||+ ++|++++|+|||||||||+++++.|+.-+ ..| ..+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 357777653 332 123499999999 99999999999999999999999997432 222 11111
Q ss_pred HHHhHceEEeccCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 449 WLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
-+..++++.| +|.. ++.||+..+ . ..+|+|+++ ++.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~----------------------------~--------stf~~e~~~-~~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG----------------------------R--------STFMVEMTE-TANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh----------------------------h--------hhhhHHHHH-HHHHH
Confidence 0234666655 4432 444444321 1 235666664 45455
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHH-HHHHHHHHh--CCCeEEEEecCcchhhhcCEEEEEeCCEEEEe
Q 003976 528 AVLRNPKILLLDEATSALDAESELI-VQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 593 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~-i~~~l~~~~--~~~T~i~iaHrl~~i~~aD~I~vl~~G~ive~ 593 (782)
..+.+|+++||||||+++|+..... ..+.++.+. .+.|+|++||..+....||++..+++|++...
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 5689999999999999999874444 355666654 38999999999988888999888899988654
No 125
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=2.4e-16 Score=175.42 Aligned_cols=179 Identities=14% Similarity=0.173 Sum_probs=115.0
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCE--EEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhH
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKT--FAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~--vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~ 453 (782)
.+++++ +++|++. + |+++||++++|+. +|||||||||||||+++|.|+. ++|.++...+....++.
T Consensus 16 ~l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 355566 7788643 3 9999999999999 9999999999999999999994 45555554444444668
Q ss_pred ceEEeccCCCcc-ccHHHHHhcCCCCCCHHH----HHHHHHHhhhHhHHhc-------CCCCcccc-------ccCCCCC
Q 003976 454 MGLVSQEPALFA-TSIANNILLGKEDASMDR----VIEAAKAANAHSFVEG-------LPDGYQTQ-------VGEGGTQ 514 (782)
Q Consensus 454 i~~V~Q~~~lf~-~Ti~eNi~~g~~~~~~~~----i~~a~~~a~~~~~i~~-------lp~G~~t~-------vge~G~~ 514 (782)
+++++|++.++. -|+.||+.||.. .+.+. +.+.++. .+.+++.. ++..-|+. |-+.+..
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred EEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 999999998885 599999999864 33221 1111111 12222222 22223333 2344556
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHH-Hh-CCCeEEEEec
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK-IM-SNRTTIVVAH 571 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~-~~-~~~T~i~iaH 571 (782)
|+-.+ +.|+|+|..+++|+++|+||..|.+.....+.+.|++ +. .|.+++.++.
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 77766 7999999999999999999999998866777777775 43 4778888774
No 126
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.55 E-value=4.1e-15 Score=157.68 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=99.7
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHh-cCCCC
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNIL-LGKED 478 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~-~g~~~ 478 (782)
.+++|++++|+||+|||||||+..+++... .|.+. .|.+..+ +..+.|++.+... ..+.+++. +|. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 378999999999999999999999998664 46653 3543321 2357777766533 22333322 232 2
Q ss_pred CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCC--CCCHHHH---HHH
Q 003976 479 ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS--ALDAESE---LIV 553 (782)
Q Consensus 479 ~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~ts--alD~~~e---~~i 553 (782)
...++..+..+... +....+.....||+||+|++ |+++++|++++|||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 23333333333222 22233455678999998875 78899999999999999 9998544 677
Q ss_pred HHHHHHHh--CCCeEEEEecCcchh
Q 003976 554 QRALEKIM--SNRTTIVVAHRLSTV 576 (782)
Q Consensus 554 ~~~l~~~~--~~~T~i~iaHrl~~i 576 (782)
.+.|.++. .|+|+|+|+|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77777763 489999999987654
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.53 E-value=1.8e-14 Score=148.45 Aligned_cols=148 Identities=16% Similarity=0.243 Sum_probs=95.1
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHc--CCCC-----CccEEEECCeeCC-CcCHHHHHhHceEEeccCCCccccHHHH
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQR--LYEP-----TSGKILLDGHDLK-SLQLKWLREQMGLVSQEPALFATSIANN 471 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~--~~~~-----~~G~I~i~g~di~-~~~~~~lR~~i~~V~Q~~~lf~~Ti~eN 471 (782)
-+++|++++|+||+|||||||++.|++ ..+| ..|.+++++.+.- .-....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5655 6789999997631 12244566778887765 5677
Q ss_pred HhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHH---
Q 003976 472 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE--- 548 (782)
Q Consensus 472 i~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~--- 548 (782)
+.+..+ .+.++..+.++ .+.+.+. -.+|+++++||||+.+|+.
T Consensus 93 ~~~~~~-~~~~~~~~~~~--~~~~~~~-------------------------------~~~~~lliiD~~~~~~~~~~~~ 138 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQLLY--QASAMMV-------------------------------ESRYALLIVDSATALYRTDYSG 138 (243)
T ss_dssp EEEEEC-CSHHHHHHHHH--HHHHHHH-------------------------------HSCEEEEEEETSSGGGC-----
T ss_pred eEEEec-CCHHHHHHHHH--HHHHHHh-------------------------------cCCceEEEEeCchHHHHHHhcC
Confidence 665433 23333322211 1111111 1689999999999999986
Q ss_pred ----HHH-----HHHHHHHHHh--CCCeEEEEecCcchhh--------------------hcCEEEEEeCC
Q 003976 549 ----SEL-----IVQRALEKIM--SNRTTIVVAHRLSTVR--------------------DVDTIMVLKNG 588 (782)
Q Consensus 549 ----~e~-----~i~~~l~~~~--~~~T~i~iaHrl~~i~--------------------~aD~I~vl~~G 588 (782)
+++ .+...|.++. .|.|+|+++|-..... .||.|++|++|
T Consensus 139 ~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 139 RGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 422 2333444432 3899999999655432 48999999875
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.50 E-value=1.5e-16 Score=173.42 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=117.6
Q ss_pred EEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH----HHHHhHc
Q 003976 379 FSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL----KWLREQM 454 (782)
Q Consensus 379 ~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~----~~lR~~i 454 (782)
.+|+++.|.. ..+|+++||++++|++++|+||+|||||||++.|.|++.|++|+|.+.|.|+..... ...|.++
T Consensus 32 ~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i 109 (337)
T 2qm8_A 32 SRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRM 109 (337)
T ss_dssp CSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGS
T ss_pred eCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhh
Confidence 3455556632 238999999999999999999999999999999999999999999999999865432 2457889
Q ss_pred eEEeccCCCccc-------------cHHHHHhc----CC-------CCC--CHHHHHHHHHH-------------hhhHh
Q 003976 455 GLVSQEPALFAT-------------SIANNILL----GK-------EDA--SMDRVIEAAKA-------------ANAHS 495 (782)
Q Consensus 455 ~~V~Q~~~lf~~-------------Ti~eNi~~----g~-------~~~--~~~~i~~a~~~-------------a~~~~ 495 (782)
++++|++.+|.. +++|.+.. |. +.. ++..+.+.++. ..+.+
T Consensus 110 ~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~ 189 (337)
T 2qm8_A 110 ARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKK 189 (337)
T ss_dssp TTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCT
T ss_pred eeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHH
Confidence 999999999852 23333310 10 000 11111111000 00000
Q ss_pred HHhcCCCCcc-cccc-CCCCCCCHHHHHHHHHHHHhcc------CCceEEEeCCCCCCCHHHHHHHHHHHHHH
Q 003976 496 FVEGLPDGYQ-TQVG-EGGTQLSGGQKQRIAIARAVLR------NPKILLLDEATSALDAESELIVQRALEKI 560 (782)
Q Consensus 496 ~i~~lp~G~~-t~vg-e~G~~LSgGQkQRiaiARAl~~------~p~illLDE~tsalD~~~e~~i~~~l~~~ 560 (782)
.+...|+-+- +.+. .....+|+|++|+++.|++++. +|+++. |||+|.++-..+.+.|.+.
T Consensus 190 ~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 190 GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0111121000 1111 0123579999999999999998 688886 9999999999999998764
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.47 E-value=3e-14 Score=160.61 Aligned_cols=154 Identities=22% Similarity=0.287 Sum_probs=106.0
Q ss_pred cccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcC----HHH--HHhHceEEeccCCCc-cc
Q 003976 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ----LKW--LREQMGLVSQEPALF-AT 466 (782)
Q Consensus 394 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~----~~~--lR~~i~~V~Q~~~lf-~~ 466 (782)
-+++||++++|++++|||+|||||||++++|.|++.|++|+|.++|.|+.... +.. .|+.|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35789999999999999999999999999999999999999999988875532 122 478899999998766 45
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccC--CCCCCCHHHHHHHHHHHHhccC-C-ceEEEeCCC
Q 003976 467 SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE--GGTQLSGGQKQRIAIARAVLRN-P-KILLLDEAT 542 (782)
Q Consensus 467 Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge--~G~~LSgGQkQRiaiARAl~~~-p-~illLDE~t 542 (782)
|+++||.++... +. |.+. .||. |. +-.+|-.--+||+.++|++..+ | .+|+..+||
T Consensus 363 tV~e~l~~a~~~-------------~~-DvVL-----IDTa-Grl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat 422 (503)
T 2yhs_A 363 VIFDAIQAAKAR-------------NI-DVLI-----ADTA-GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHHT-------------TC-SEEE-----ECCC-CSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred HHHHHHHHHHhc-------------CC-CEEE-----EeCC-CccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 999999876321 00 1110 1211 11 0111222336889999988654 5 356555688
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEec
Q 003976 543 SALDAESELIVQRALEKIMSNRTTIVVAH 571 (782)
Q Consensus 543 salD~~~e~~i~~~l~~~~~~~T~i~iaH 571 (782)
++.|.... .+.+.+ ..+.|.|++||
T Consensus 423 tGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 423 TGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp GTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred ccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 87655422 122222 24789999999
No 130
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.44 E-value=1.4e-16 Score=158.72 Aligned_cols=166 Identities=16% Similarity=0.104 Sum_probs=108.8
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCc-cccHHHHHhcCCCCCCHH
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALF-ATSIANNILLGKEDASMD 482 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf-~~Ti~eNi~~g~~~~~~~ 482 (782)
|++++|+|||||||||++++|.+ |.+|.+.++|.++... ..+++++|.+..+ ..|+++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 67899999999999999999997 6789999999765432 2467888876433 347777765421
Q ss_pred HHHHHHHHhhhHhHHhcCCCCccccccC----CCCCC--CHHHHHHHHHHH------HhccCCceEEEeCCCCCCCHHHH
Q 003976 483 RVIEAAKAANAHSFVEGLPDGYQTQVGE----GGTQL--SGGQKQRIAIAR------AVLRNPKILLLDEATSALDAESE 550 (782)
Q Consensus 483 ~i~~a~~~a~~~~~i~~lp~G~~t~vge----~G~~L--SgGQkQRiaiAR------Al~~~p~illLDE~tsalD~~~e 550 (782)
....+ .+. +.+ ++...+. .-..+ |+||+|++.++. +++++|+...+|+ ++|+...
T Consensus 67 --~~~~~-~~~-~~i------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 67 --VNFLL-AQN-DVV------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp --HHHHH-TTC-EEE------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred --HHHHh-cCC-cEE------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 00000 010 111 1111111 01234 889888988888 8999999888884 7999876
Q ss_pred HHHHHHHHHHh-CCCeEEEEecC-cchhhh-cCEEEEEeCCEEEEecChhHHh
Q 003976 551 LIVQRALEKIM-SNRTTIVVAHR-LSTVRD-VDTIMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 551 ~~i~~~l~~~~-~~~T~i~iaHr-l~~i~~-aD~I~vl~~G~ive~G~~~eL~ 600 (782)
+. .+.+..+. .+.|+|..+|. +++++. ||+|+ ++|+++..|+.+-|-
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 66 67777664 35799999999 988866 89998 999999999987663
No 131
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.41 E-value=3.7e-13 Score=148.70 Aligned_cols=74 Identities=30% Similarity=0.427 Sum_probs=68.1
Q ss_pred CCCCHHHHHHH------HHHHHhccC-CceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEE
Q 003976 513 TQLSGGQKQRI------AIARAVLRN-PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 585 (782)
Q Consensus 513 ~~LSgGQkQRi------aiARAl~~~-p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl 585 (782)
..||||||||+ |+|||+..+ |++|||||||++||+.+...+.+.|.++.+++|+|+|||+.+....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 58999999988 678999999 99999999999999999999999999876667999999999876779999999
Q ss_pred e
Q 003976 586 K 586 (782)
Q Consensus 586 ~ 586 (782)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 132
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.41 E-value=2.4e-13 Score=147.34 Aligned_cols=145 Identities=16% Similarity=0.140 Sum_probs=99.7
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH----HHHHhHce--EEeccCCCccc-cHHHHH
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL----KWLREQMG--LVSQEPALFAT-SIANNI 472 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~----~~lR~~i~--~V~Q~~~lf~~-Ti~eNi 472 (782)
..++|++++|||||||||||+++.|.|++.|++|+|.++|.|+..... ..++++++ +++|++.++.. |++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999999977653 34566666 99999988864 999999
Q ss_pred hcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHH
Q 003976 473 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552 (782)
Q Consensus 473 ~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~ 552 (782)
.++... + .+.+. .||. |... .-..=.++.-.++|++..++++++||.+|. .|..
T Consensus 205 ~~~~~~-------------~-~d~vl-----iDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~---- 258 (328)
T 3e70_C 205 QHAKAR-------------G-IDVVL-----IDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIV---- 258 (328)
T ss_dssp HHHHHH-------------T-CSEEE-----EEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHH----
T ss_pred HHHHhc-------------c-chhhH-----Hhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHH----
Confidence 764210 0 01100 1221 1100 001112334459999999999999996655 3332
Q ss_pred HHHHHHHH--hCCCeEEEEecC
Q 003976 553 VQRALEKI--MSNRTTIVVAHR 572 (782)
Q Consensus 553 i~~~l~~~--~~~~T~i~iaHr 572 (782)
+.++.. ..+.|.|++||-
T Consensus 259 --~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 259 --EQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --HHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHhcCCCEEEEeCc
Confidence 222222 247899999994
No 133
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.40 E-value=8.6e-14 Score=151.93 Aligned_cols=122 Identities=14% Similarity=0.114 Sum_probs=83.5
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-CCccEEEEC-CeeCCCcCHHHHHhHceEEeccCCCccc-cHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-PTSGKILLD-GHDLKSLQLKWLREQMGLVSQEPALFAT-SIA 469 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-~~~G~I~i~-g~di~~~~~~~lR~~i~~V~Q~~~lf~~-Ti~ 469 (782)
-++++++. .+|++++|+||||||||||+++|.|+.. |..|+|.++ |.+.. ...+.++++++|++.++.. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 57788775 4799999999999999999999999999 999999997 76542 1345679999999998876 999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc
Q 003976 470 NNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530 (782)
Q Consensus 470 eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~ 530 (782)
++- ..+.+.+++.+ ...+++..+ |+....+....+|| ||+||++||++++
T Consensus 280 e~~---l~~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFG---LWHLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCC---CCCCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhh---hcCCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 963 33344444432 233444433 44444455567899 9999999999863
No 134
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.39 E-value=1.4e-14 Score=150.72 Aligned_cols=167 Identities=15% Similarity=0.155 Sum_probs=107.8
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHH---cCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCcc-ccHHHHHhcC---
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQ---RLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLG--- 475 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~---~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~-~Ti~eNi~~g--- 475 (782)
++++++|+||+||||||++++|. |+..|+.|+|..+|.+.. ..++..+..++|++.++. .|+.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999 999999999998886542 235566777888887665 4889998641
Q ss_pred ----------CCCCCHHHHHHHHHHhhhHhHHh--cCCC--CccccccCCCCCCCHHHHHHHHHHHHh-ccCCceEEEe-
Q 003976 476 ----------KEDASMDRVIEAAKAANAHSFVE--GLPD--GYQTQVGEGGTQLSGGQKQRIAIARAV-LRNPKILLLD- 539 (782)
Q Consensus 476 ----------~~~~~~~~i~~a~~~a~~~~~i~--~lp~--G~~t~vge~G~~LSgGQkQRiaiARAl-~~~p~illLD- 539 (782)
.+ .+.++.....+.... +.+. ..|. ..+-....+...||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~l~~~~~~-~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEALDKICEV-DLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHHHHTTCCC-CEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCC-CCHHHHHHHHhhcCC-CEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 11 122211111100000 0000 0000 011112334457898 66 889 9999999999
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeC
Q 003976 540 ---EATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 587 (782)
Q Consensus 540 ---E~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~ 587 (782)
|||+++|..++..+.+.+++..+.... -+....+.+++++++.
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~-----v~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYKDVAKP-----VIELYKSRGVLHQFSG 218 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHHHHHHH-----HHHHHHHTTCEEEEEC
T ss_pred ccccccccCCCCcHHHHHHHHHHHHHhHHH-----HHHHHhhcCcEEEECC
Confidence 999999999999999988776432100 0112334566777764
No 135
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=2.3e-13 Score=148.45 Aligned_cols=138 Identities=21% Similarity=0.283 Sum_probs=81.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHc-CCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCcc-ccHHHHHhcCCCCCCHHH
Q 003976 406 TFAFVGPSGSGKSTIISMVQR-LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDR 483 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~-~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~-~Ti~eNi~~g~~~~~~~~ 483 (782)
.+.|+||+|+||||+++++.| ++.|..|.|.++|.+...... -+..+++++|++++.- .+- .+. ...+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 499999999999999999999 899999999999988764333 3778999999887532 110 011 11122
Q ss_pred HHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCC
Q 003976 484 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 563 (782)
Q Consensus 484 i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~ 563 (782)
+.+..+.+ .... +++..+ .||| +..+|+++|||||++ ||+.+...+.+.+++...+
T Consensus 109 ~~~~i~~~-----~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKEV-----AQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHHH-----TTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHH-----HHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 33333221 1111 122111 5676 788999999999999 9999999999999987778
Q ss_pred CeEEEEecCcchh
Q 003976 564 RTTIVVAHRLSTV 576 (782)
Q Consensus 564 ~T~i~iaHrl~~i 576 (782)
.++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999998754
No 136
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.38 E-value=1.5e-15 Score=173.95 Aligned_cols=171 Identities=13% Similarity=0.126 Sum_probs=118.2
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCcc-ccHHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANN 471 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~-~Ti~eN 471 (782)
+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|+++|.+--.++. +++++++.|++.... .|.+++
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHHH
Confidence 7899999999999999999999999999999999999999999999976222221 345778888766222 277777
Q ss_pred HhcC---CC------CCCHHHHHHHHHHhhh-------------HhHHh---cCCCCcccccc-------CCCCCCCHHH
Q 003976 472 ILLG---KE------DASMDRVIEAAKAANA-------------HSFVE---GLPDGYQTQVG-------EGGTQLSGGQ 519 (782)
Q Consensus 472 i~~g---~~------~~~~~~i~~a~~~a~~-------------~~~i~---~lp~G~~t~vg-------e~G~~LSgGQ 519 (782)
+... +| +...+|...+.+.++. .+.+. ..|.|....+. .....+||||
T Consensus 326 l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~ 405 (511)
T 2oap_1 326 LRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNT 405 (511)
T ss_dssp HHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSC
T ss_pred HHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCC
Confidence 6543 22 3445556666555431 12222 22333332221 2334689999
Q ss_pred HHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCeEEE--EecCcchhhh
Q 003976 520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIV--VAHRLSTVRD 578 (782)
Q Consensus 520 kQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~-~~~T~i~--iaHrl~~i~~ 578 (782)
|||.++|. + | |++||+++.+.+.+.|.++. .++|+++ +||.++.+..
T Consensus 406 ~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 406 RLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp EEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred ceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 99987751 1 6 99999987776666666554 3678875 8999988754
No 137
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.38 E-value=1e-15 Score=171.10 Aligned_cols=129 Identities=16% Similarity=0.204 Sum_probs=91.0
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC----cCHHHHHhHceEEe---------c
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS----LQLKWLREQMGLVS---------Q 459 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~----~~~~~lR~~i~~V~---------Q 459 (782)
+|+++ + .++|+.++|+|||||||||++++|+|+++|++|+|.++|.++.. ++...+++++++++ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45565 4 37999999999999999999999999999999999999988742 11223455676655 9
Q ss_pred cCCCc--c-----ccHHHHHhcCCC--------CC-CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH
Q 003976 460 EPALF--A-----TSIANNILLGKE--------DA-SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523 (782)
Q Consensus 460 ~~~lf--~-----~Ti~eNi~~g~~--------~~-~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi 523 (782)
+|.++ . .|+++|+.++.. .. +..+..+.+...++.++. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 99763 2 389999876421 11 112333333333332221 345899999999
Q ss_pred HHHHHhccCCceEEE
Q 003976 524 AIARAVLRNPKILLL 538 (782)
Q Consensus 524 aiARAl~~~p~illL 538 (782)
||||++.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998753
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.37 E-value=9.8e-13 Score=146.15 Aligned_cols=147 Identities=16% Similarity=0.251 Sum_probs=98.4
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHH--HHcCCCCCcc-----EEEECCeeC-CCcCHHHHHhHceEEeccCCCccccHHHH
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISM--VQRLYEPTSG-----KILLDGHDL-KSLQLKWLREQMGLVSQEPALFATSIANN 471 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~l--l~~~~~~~~G-----~I~i~g~di-~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eN 471 (782)
-|++|++++|+||||||||||+.. +.+..+|+.| .+++++.+. +......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4577776444 899999763 23334556677887766 67888
Q ss_pred HhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh--ccCCceEEEeCCCCCCCHHH
Q 003976 472 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV--LRNPKILLLDEATSALDAES 549 (782)
Q Consensus 472 i~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl--~~~p~illLDE~tsalD~~~ 549 (782)
+.+..+ .+.++..+.. .-++++ -.+|+++++||+|+.+|++.
T Consensus 247 i~~~~~-~~~~~~~~~l-----------------------------------~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARA-YNADHQLRLL-----------------------------------DAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEEC-CSHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEecc-CChHHHHHHH-----------------------------------HHHHHHHHhcCCceEEecchhhhCchhh
Confidence 887654 2222222221 111121 14799999999999999763
Q ss_pred H------------HHHHHHHHHHh--CCCeEEEEecCcch-------------------hhh-cCEEEEEeCCE
Q 003976 550 E------------LIVQRALEKIM--SNRTTIVVAHRLST-------------------VRD-VDTIMVLKNGQ 589 (782)
Q Consensus 550 e------------~~i~~~l~~~~--~~~T~i~iaHrl~~-------------------i~~-aD~I~vl~~G~ 589 (782)
. ..+.+.|+++. .+.|+|+|+|-.+. +.+ +|.+++|++|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 2 45566666653 38999999998322 233 68888888763
No 139
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.35 E-value=2.9e-14 Score=138.43 Aligned_cols=89 Identities=12% Similarity=0.102 Sum_probs=73.3
Q ss_pred EeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEec
Q 003976 380 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQ 459 (782)
Q Consensus 380 ~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q 459 (782)
+|++++|.. ..+++++||++++|++++|+||+|||||||+++|.|++ |++|+|.++|.++.+.. ..+ .+|+|
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~---~~~~q 82 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA---GKMIY 82 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET---TEEEE
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC---Cccee
Confidence 455666742 24899999999999999999999999999999999999 99999999999885321 112 28999
Q ss_pred cCCCccccHHHHHh-cCC
Q 003976 460 EPALFATSIANNIL-LGK 476 (782)
Q Consensus 460 ~~~lf~~Ti~eNi~-~g~ 476 (782)
++.+|.-|+.||+. +|.
T Consensus 83 ~~~l~~ltv~e~l~~~g~ 100 (158)
T 1htw_A 83 HFDLYRLADPEELEFMGI 100 (158)
T ss_dssp EEECTTCSCTTHHHHSTH
T ss_pred ccccccCCcHHHHHHcCh
Confidence 99999779999995 453
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.29 E-value=2.1e-12 Score=124.01 Aligned_cols=91 Identities=15% Similarity=0.238 Sum_probs=71.2
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc--EEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG--KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 470 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G--~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~e 470 (782)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+.+++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999987 57 666666543221
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHH
Q 003976 471 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550 (782)
Q Consensus 471 Ni~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e 550 (782)
+++.+|++|+||||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 3467899999999998 665557
Q ss_pred HHHHHHHHHHh-CCCe-EEEEecC
Q 003976 551 LIVQRALEKIM-SNRT-TIVVAHR 572 (782)
Q Consensus 551 ~~i~~~l~~~~-~~~T-~i~iaHr 572 (782)
..+.+.+++.. +++| +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 78888887654 4688 7777775
No 141
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.28 E-value=1.3e-14 Score=153.80 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=105.3
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccC-CCcc-ccHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEP-ALFA-TSIAN 470 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~-~lf~-~Ti~e 470 (782)
+++++++++++| ++|+||+|||||||+++|.+.+.+ |.|.++|.++.+......++++++++|++ ..+. -++.|
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~D 110 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFD 110 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeee
Confidence 899999999999 999999999999999999999987 79999999998777777788999999986 3443 36677
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCC-------
Q 003976 471 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS------- 543 (782)
Q Consensus 471 Ni~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~ts------- 543 (782)
||....+....++.. ...+. +.+.-..|||||+||..|++|+..+|++| |||+.
T Consensus 111 eid~~~~~r~~~~~~------~~~~~-----------~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 111 EVDALCPRRSDRETG------ASVRV-----------VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp TCTTTCC---------------CTTH-----------HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred hhhhhhcccCCCcch------HHHHH-----------HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 876643321111100 01111 11222468999999999999999999985 99975
Q ss_pred -----CCCHHHHHHHHHHH
Q 003976 544 -----ALDAESELIVQRAL 557 (782)
Q Consensus 544 -----alD~~~e~~i~~~l 557 (782)
.-|.+.+..|.+.+
T Consensus 172 ~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEECCSCCHHHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHH
Confidence 23666776666554
No 142
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.27 E-value=9.1e-15 Score=150.49 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=65.2
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHH-cCC------------CCCccEEEECCeeCCCcCHHHHHhHceEEec
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ-RLY------------EPTSGKILLDGHDLKSLQLKWLREQMGLVSQ 459 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~-~~~------------~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q 459 (782)
..+++||++++|++++|+|||||||||++++|. |++ +|..|++ +|.++...+...++..+ .+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~~---~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRLC---SN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHHH---HT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhhh---hc
Confidence 678999999999999999999999999999999 999 6666665 56554444444443321 23
Q ss_pred cCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcC-CCCccccccCCCCCCCHHHHHHH-HHHH-HhccCCceE
Q 003976 460 EPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL-PDGYQTQVGEGGTQLSGGQKQRI-AIAR-AVLRNPKIL 536 (782)
Q Consensus 460 ~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~l-p~G~~t~vge~G~~LSgGQkQRi-aiAR-Al~~~p~il 536 (782)
+..++..++.+|+ +|.+. +++.++++... ..+..+ ++|. ..-+++. .-++ .++..|+..
T Consensus 91 ~~~~~~~~~~~~~-~~~~~---~~i~~~~~~~~--~vild~~~~g~------------~~~~~~~~~~~~~v~v~~~~~~ 152 (231)
T 3lnc_A 91 GEIIEHAEVFGNF-YGVPR---KNLEDNVDKGV--STLLVIDWQGA------------FKFMEMMREHVVSIFIMPPSME 152 (231)
T ss_dssp TCEEEEEEETTEE-EEEEC---TTHHHHHHHTC--EEEEECCHHHH------------HHHHHHSGGGEEEEEEECSCHH
T ss_pred Cceehhhhhcccc-CCCCH---HHHHHHHHcCC--eEEEEcCHHHH------------HHHHHhcCCCeEEEEEECCcHH
Confidence 3333334444443 44332 23333332211 111111 0011 1124444 2223 346788889
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh
Q 003976 537 LLDEATSALDAESELIVQRALEKIM 561 (782)
Q Consensus 537 lLDE~tsalD~~~e~~i~~~l~~~~ 561 (782)
+|||.+++.|..++..+++.|.+..
T Consensus 153 ~l~~Rl~~R~~~~~~~i~~rl~~~~ 177 (231)
T 3lnc_A 153 ELRRRLCGRRADDSEVVEARLKGAA 177 (231)
T ss_dssp HHHHC--------------CHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999998888887776543
No 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.21 E-value=6.1e-12 Score=123.98 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=75.8
Q ss_pred eEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCC
Q 003976 398 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE 477 (782)
Q Consensus 398 sl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~ 477 (782)
++++++|+.++|+||+|||||||++++.+.+.|.+|.. +.++ +.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~--------- 75 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DT--------- 75 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EH---------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EH---------
Confidence 57788999999999999999999999999987766521 1111 11
Q ss_pred CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCC-CCCHHHHHHHHHH
Q 003976 478 DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS-ALDAESELIVQRA 556 (782)
Q Consensus 478 ~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~ts-alD~~~e~~i~~~ 556 (782)
+++.+..+.. .. ++. .. -+...+.+|++|+||||++ ++|+.....+.+.
T Consensus 76 ----~~~~~~~~~~-----~~---~~~----------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 76 ----KDLIFRLKHL-----MD---EGK----------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp ----HHHHHHHHHH-----HH---HTC----------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred ----HHHHHHHHHH-----hc---Cch----------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 1111111100 00 000 00 0122345999999999996 8999999999988
Q ss_pred HHHHh-CCCeEEEEecCcch
Q 003976 557 LEKIM-SNRTTIVVAHRLST 575 (782)
Q Consensus 557 l~~~~-~~~T~i~iaHrl~~ 575 (782)
+++.. +++|+|++||....
T Consensus 126 l~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHTTCEEEEECCCCSC
T ss_pred HHHHHHcCCCEEEEcCCChh
Confidence 87764 78999999998743
No 144
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.21 E-value=2.3e-13 Score=138.93 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=105.5
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCC---CCCccEEEE--------CCeeCC-CcCHHHHHhHceEEeccC------CCcc
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLY---EPTSGKILL--------DGHDLK-SLQLKWLREQMGLVSQEP------ALFA 465 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~---~~~~G~I~i--------~g~di~-~~~~~~lR~~i~~V~Q~~------~lf~ 465 (782)
+.+++|+||+||||||++++|.+.| .++.|.+.. +|.++. +....++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999887 788999988 788876 367788999999999986 4566
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccc-cCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCC
Q 003976 466 TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQV-GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543 (782)
Q Consensus 466 ~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~v-ge~G~~LSgGQkQRiaiARAl~~~p~illLDE~ts 543 (782)
.++.+|+. ++++..++..+.+++++...+.+..+.+ .++|.-++|+ .++++++++++++|+.+++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 67777752 5688899999999999988777776665 3567788887 56778899999999988753
No 145
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.18 E-value=8.5e-13 Score=141.66 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=77.4
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEE---CCeeCCCcCHHHHH-hHceEEeccCCCc------cccHH
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL---DGHDLKSLQLKWLR-EQMGLVSQEPALF------ATSIA 469 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i---~g~di~~~~~~~lR-~~i~~V~Q~~~lf------~~Ti~ 469 (782)
++.+|++++++||||||||||+++|. +.+|..|+|.+ +|.++..... .++ +.+|+|+|+|-+. .-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9998876542 222 3699999999553 4578
Q ss_pred HHH--hcCC------------C-CCCHHHHHHHHHHhhhHh-HHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 470 NNI--LLGK------------E-DASMDRVIEAAKAANAHS-FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 470 eNi--~~g~------------~-~~~~~~i~~a~~~a~~~~-~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
||+ .|+. + ....+.+.++++..++.+ ...+ ....|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----------~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----------YLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----------HHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----------HHHHHHHHHHHHHHHhc
Confidence 898 4430 1 112345666666666543 2222 22468998888899987
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.12 E-value=2e-12 Score=139.09 Aligned_cols=140 Identities=19% Similarity=0.248 Sum_probs=99.3
Q ss_pred cCcEEEEeEEEEcCCCCCcccccceEEe-------------------eCCCEEEEeCCCCCcHHHHHHHHHcCCC--CCc
Q 003976 374 AGQIEFSEVCFAYPSRPHMVFENLNFSV-------------------DAGKTFAFVGPSGSGKSTIISMVQRLYE--PTS 432 (782)
Q Consensus 374 ~g~i~~~~v~f~y~~~~~~vL~~isl~i-------------------~~G~~vaivG~sGsGKSTl~~ll~~~~~--~~~ 432 (782)
++.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|.|++. |++
T Consensus 35 ~~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp CTTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred ccccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 45799999999993 4899999988 9999999999999999999999999999 999
Q ss_pred cEEEE---CCeeCCCcCHHHHHhHceEEeccCCCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccc
Q 003976 433 GKILL---DGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQV 508 (782)
Q Consensus 433 G~I~i---~g~di~~~~~~~lR~~i~~V~Q~~~lf~-~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~v 508 (782)
|+|.+ ||.+.. ...++.+++| |+..++. -|+.+|+.+...- ..-.+.+ ..|. |+-..
T Consensus 111 G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l------------~~~~~~i-~~P~-~~~~~ 171 (308)
T 1sq5_A 111 RRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVSDL------------KSGVPNV-TAPV-YSHLI 171 (308)
T ss_dssp CCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH------------TTTCSCE-EECC-EETTT
T ss_pred CeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH------------hCCCCce-eccc-ccccc
Confidence 99999 997742 2456789999 7765544 3777776553110 0000001 1221 22222
Q ss_pred cCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCH
Q 003976 509 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547 (782)
Q Consensus 509 ge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~ 547 (782)
+ +|++.+.+.+.+|+++|+|.|....|.
T Consensus 172 ~-----------~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 172 Y-----------DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp T-----------EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred c-----------CcccccceecCCCCEEEECchhhCCCc
Confidence 1 333333456678999999999987774
No 147
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.11 E-value=1.8e-11 Score=136.65 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=91.9
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 472 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi 472 (782)
--++++|+++.|+.++|||++|||||||++.|.+..+ .+.+.+...+. .++++|.|+.. ..-++.|+.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~-----p~~G~V~~~~~-~~~~l~Dtp 213 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLS-----PNLGVVEVSEE-ERFTLADIP 213 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSC-----CEEEEEECSSS-CEEEEEECC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccceec-----ceeeEEEecCc-ceEEEEecc
Confidence 3479999999999999999999999999999999843 34444443332 24566665530 011222221
Q ss_pred hcCC-----CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCH
Q 003976 473 LLGK-----EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547 (782)
Q Consensus 473 ~~g~-----~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~ 547 (782)
-+.. ..... +..+..+. ++..+.-+ +.. .+.-.+||+||+||.++||++..+|.|++| +.+|.
T Consensus 214 Gli~~a~~~~~L~~-~fl~~~er--a~~lL~vv--Dls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 214 GIIEGASEGKGLGL-EFLRHIAR--TRVLLYVL--DAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp CCCCCGGGSCCSCH-HHHHHHTS--SSEEEEEE--ETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred ccccchhhhhhhhH-HHHHHHHH--HHhhhEEe--CCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 1110 00111 11111111 11122111 010 222347999999999999999999999999 89998
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEEec
Q 003976 548 ESELIVQRALEKIM-SNRTTIVVAH 571 (782)
Q Consensus 548 ~~e~~i~~~l~~~~-~~~T~i~iaH 571 (782)
..+..+.+..+.+. .+.+++.||.
T Consensus 282 ~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 282 LEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp SCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 76533333333332 3567776654
No 148
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.08 E-value=9.2e-11 Score=125.37 Aligned_cols=132 Identities=18% Similarity=0.132 Sum_probs=94.1
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
+.++++++.|+... ++++|+ +|++++++|++||||||++..|.+.+.+..|+|.+.+.|++.-...+ +.
T Consensus 77 ~~~~~l~~~~~~~~----~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~---ql-- 145 (295)
T 1ls1_A 77 TVYEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE---QL-- 145 (295)
T ss_dssp HHHHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH---HH--
T ss_pred HHHHHHHHHHCCCC----ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH---HH--
Confidence 56677888885321 678888 89999999999999999999999999999999999998876422111 00
Q ss_pred EeccCCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceE
Q 003976 457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 536 (782)
Q Consensus 457 V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~il 536 (782)
...++..++ .-+|.| ..-...+-||.+|+++...++|++
T Consensus 146 ----------------------------~~~~~~~~l----~~~~~~---------~~~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 146 ----------------------------RLLGEKVGV----PVLEVM---------DGESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp ----------------------------HHHHHHHTC----CEEECC---------TTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred ----------------------------HHhcccCCe----EEEEcC---------CCCCHHHHHHHHHHHHHhCCCCEE
Confidence 001111111 111111 112344567899999988999999
Q ss_pred EEeCC-CCCCCHHHHHHHHHHHHHH
Q 003976 537 LLDEA-TSALDAESELIVQRALEKI 560 (782)
Q Consensus 537 lLDE~-tsalD~~~e~~i~~~l~~~ 560 (782)
|+||| ++++|...-..+.+..+..
T Consensus 185 iiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 185 LVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCccccHHHHHHHHHHhhhc
Confidence 99999 9999988777777666554
No 149
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.07 E-value=1.1e-11 Score=133.00 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=68.6
Q ss_pred EEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEE---CCeeCCCcCHHHHHhHceEEeccCC-------------
Q 003976 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL---DGHDLKSLQLKWLREQMGLVSQEPA------------- 462 (782)
Q Consensus 399 l~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i---~g~di~~~~~~~lR~~i~~V~Q~~~------------- 462 (782)
|++.+|++++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+.+|+|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9999876542111246999999985
Q ss_pred ---Cccc-cHHHHHhcCCC---CCCHHHHHHHHHHhhhH-hHHhcCC
Q 003976 463 ---LFAT-SIANNILLGKE---DASMDRVIEAAKAANAH-SFVEGLP 501 (782)
Q Consensus 463 ---lf~~-Ti~eNi~~g~~---~~~~~~i~~a~~~a~~~-~~i~~lp 501 (782)
+|.. |+ +|+.|+.- ....+++.++++..++. +...+.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4544 77 99988531 12345688888888883 5555444
No 150
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.07 E-value=1e-11 Score=129.65 Aligned_cols=100 Identities=21% Similarity=0.178 Sum_probs=78.0
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHH---cCCCCCccEEE--------ECCeeC-CCcCHHHHHhHceEEecc
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ---RLYEPTSGKIL--------LDGHDL-KSLQLKWLREQMGLVSQE 460 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~---~~~~~~~G~I~--------i~g~di-~~~~~~~lR~~i~~V~Q~ 460 (782)
++++.+ ++|++++|+|||||||||++++|. |++.|++|.|. .+|.++ .......+++++++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 455544 789999999999999999999999 99999999999 999999 456788999999999964
Q ss_pred ------CCCccccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCC
Q 003976 461 ------PALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD 502 (782)
Q Consensus 461 ------~~lf~~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~ 502 (782)
.++++.++.+||. .+++..++.....++.+.....
T Consensus 96 ~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~l~ 136 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVREALL 136 (252)
T ss_dssp ETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHHHHH
T ss_pred CCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHHHHH
Confidence 4566778888764 3456666666666766655433
No 151
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.06 E-value=8.6e-11 Score=117.71 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=56.7
Q ss_pred eEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc-cHHHHHh
Q 003976 398 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNIL 473 (782)
Q Consensus 398 sl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~-Ti~eNi~ 473 (782)
|+++++|++++|+||||||||||+++|.|+++ .+.++|.++........+..++|++|++.+|.. +..+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57789999999999999999999999999974 588888887766655567789999999988865 5555543
No 152
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.04 E-value=2.9e-11 Score=120.09 Aligned_cols=128 Identities=19% Similarity=0.390 Sum_probs=65.5
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCC-------------CCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHH
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYE-------------PTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 470 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~-------------~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~e 470 (782)
|++++|+||||||||||+++|.|+++ |..|++ +|.++...+.+.+++.+. |+..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~~---~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK---NNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHHH---TTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHHh---hcceeeEEEEec
Confidence 67899999999999999999999998 888886 898888888777776643 566666666666
Q ss_pred HHhcCCCCCCHHHHHHHHHH----------hhh---Hh---------HHhc-CCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 471 NILLGKEDASMDRVIEAAKA----------ANA---HS---------FVEG-LPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 471 Ni~~g~~~~~~~~i~~a~~~----------a~~---~~---------~i~~-lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
|+ ||.+ .+++.++++. .++ .+ ||.. -++-+...+-++|..-....+||++-|+
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC--------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 64 5543 2233333222 011 11 1111 1256677777888887788899999998
Q ss_pred Hhc-----cCCceEEEeC
Q 003976 528 AVL-----RNPKILLLDE 540 (782)
Q Consensus 528 Al~-----~~p~illLDE 540 (782)
+-+ +.+|.+|..+
T Consensus 152 ~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELAYAETGAHDKVIVND 169 (186)
T ss_dssp -------CCCCSEEEECS
T ss_pred HHHHhhcccCCcEEEECc
Confidence 765 5677777665
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.01 E-value=3.7e-10 Score=121.11 Aligned_cols=111 Identities=18% Similarity=0.301 Sum_probs=78.3
Q ss_pred ceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCC
Q 003976 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK 476 (782)
Q Consensus 397 isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~ 476 (782)
++++.++|++++|+|++||||||++..|.+.+.+..|+|.+.+.|..... ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------------------HH-------
Confidence 34556789999999999999999999999999999999999887753210 01
Q ss_pred CCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH---HHHHHhccCCceEEEeCCCCCCCHHHHHHH
Q 003976 477 EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI---AIARAVLRNPKILLLDEATSALDAESELIV 553 (782)
Q Consensus 477 ~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi---aiARAl~~~p~illLDE~tsalD~~~e~~i 553 (782)
+++...++..+ +| . + ...|||+.|++ +|+||+.++|+++|+|+|.. ......+
T Consensus 149 -----eqL~~~~~~~g-------l~----~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l 204 (306)
T 1vma_A 149 -----EQLKIWGERVG-------AT----V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNL 204 (306)
T ss_dssp -----HHHHHHHHHHT-------CE----E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHH
T ss_pred -----HHHHHHHHHcC-------Cc----E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHH
Confidence 12222222222 11 1 1 24578999999 99999999999999999974 3333444
Q ss_pred HHHHHH
Q 003976 554 QRALEK 559 (782)
Q Consensus 554 ~~~l~~ 559 (782)
++.+.+
T Consensus 205 ~~eL~~ 210 (306)
T 1vma_A 205 MEELRK 210 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.98 E-value=3.2e-10 Score=121.23 Aligned_cols=138 Identities=13% Similarity=0.191 Sum_probs=91.1
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCCCCH
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASM 481 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~ 481 (782)
++|+.++++||+||||||++..|.+.+.+.+| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999998777 14666767762 333333322
Q ss_pred HHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 003976 482 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561 (782)
Q Consensus 482 ~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~ 561 (782)
..++..+ +| -... .+ ++..+.+|+++ ++|+++|+| |+++|+..+..+.+..+-..
T Consensus 155 ----~~~~~~g-------l~----~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 155 ----TYAELLQ-------AP----LEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp ----HHHTTTT-------CC----CCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred ----HHHHhcC-------CC----eEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 2111111 22 1111 12 34567788875 999999999 99999887666655433222
Q ss_pred ---CCCeEEEE--ecCcchhhh-cCEEEEEeCCEEEE
Q 003976 562 ---SNRTTIVV--AHRLSTVRD-VDTIMVLKNGQVVE 592 (782)
Q Consensus 562 ---~~~T~i~i--aHrl~~i~~-aD~I~vl~~G~ive 592 (782)
.+.+++++ +|..+.+.+ +|++..++.|.|+-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23456666 898777765 67766667777775
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.97 E-value=1.5e-12 Score=137.68 Aligned_cols=136 Identities=18% Similarity=0.266 Sum_probs=97.4
Q ss_pred EEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEE
Q 003976 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 457 (782)
Q Consensus 378 ~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V 457 (782)
+++++...|.. ..+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++.++++
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 34566666642 23899999999999 99999999999999999999986 79999999887666555667788899
Q ss_pred eccCC-Ccc-ccHHHHH-hcCCCCC-----CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 458 SQEPA-LFA-TSIANNI-LLGKEDA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 458 ~Q~~~-lf~-~Ti~eNi-~~g~~~~-----~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
+|++. .+. -++.||| .++.... ..++..+.+ ..++ ..|||||+||..+|+|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH---------------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEEe
Confidence 99864 343 3667777 3432111 111222211 1222 24789999999999999
Q ss_pred ccCCceEEEeCC
Q 003976 530 LRNPKILLLDEA 541 (782)
Q Consensus 530 ~~~p~illLDE~ 541 (782)
..+|++ ||++
T Consensus 185 t~~p~~--ld~~ 194 (278)
T 1iy2_A 185 TNRPDI--LDPA 194 (278)
T ss_dssp ESCTTS--SCHH
T ss_pred cCCchh--CCHh
Confidence 999986 5544
No 156
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.95 E-value=1.9e-12 Score=134.80 Aligned_cols=138 Identities=18% Similarity=0.252 Sum_probs=98.7
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceE
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~ 456 (782)
.+++++.+.|.. ..+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++.++.
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 455677766742 23899999999999 99999999999999999999986 7999999988766555566778888
Q ss_pred EeccCC-Ccc-ccHHHHH-hcCCCCC-----CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHH
Q 003976 457 VSQEPA-LFA-TSIANNI-LLGKEDA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528 (782)
Q Consensus 457 V~Q~~~-lf~-~Ti~eNi-~~g~~~~-----~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARA 528 (782)
++|+.. .+. -++.||| .++.... ..++..+.. ..++ ..|||||+||..+|+|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH---------------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEE
Confidence 998864 333 3666777 4432111 111211111 1222 2478999999999999
Q ss_pred hccCCceEEEeCCC
Q 003976 529 VLRNPKILLLDEAT 542 (782)
Q Consensus 529 l~~~p~illLDE~t 542 (782)
+..+|++ ||++.
T Consensus 160 ~t~~p~~--ld~~l 171 (254)
T 1ixz_A 160 ATNRPDI--LDPAL 171 (254)
T ss_dssp EESCGGG--SCGGG
T ss_pred ccCCchh--CCHHH
Confidence 9999987 67765
No 157
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.94 E-value=1.3e-10 Score=116.50 Aligned_cols=83 Identities=23% Similarity=0.358 Sum_probs=68.6
Q ss_pred eEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC-------------CCccEEEECCeeCCCcCHHHHHhHceEEeccCCCc
Q 003976 398 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-------------PTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALF 464 (782)
Q Consensus 398 sl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~-------------~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf 464 (782)
|+...+|++++|+||||||||||+++|.+.++ |..|+ +||++..-++.+.+++.+ .|+.+|+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34456899999999999999999999999986 77888 799999999999999986 5999999
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHH
Q 003976 465 ATSIANNILLGKEDASMDRVIEAAK 489 (782)
Q Consensus 465 ~~Ti~eNi~~g~~~~~~~~i~~a~~ 489 (782)
.+++.+| .||.+ .+.+.++++
T Consensus 88 ~~~~~~n-~YGt~---~~~v~~~l~ 108 (197)
T 3ney_A 88 FGSYQGN-MFGTK---FETVHQIHK 108 (197)
T ss_dssp EEEETTE-EEEEE---HHHHHHHHH
T ss_pred hhhhhce-ecccc---hhhHHHHHh
Confidence 9999999 58865 344555543
No 158
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.90 E-value=5.2e-10 Score=126.52 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=62.7
Q ss_pred EEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH--------H
Q 003976 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK--------W 449 (782)
Q Consensus 378 ~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~--------~ 449 (782)
++.+++... ..+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~ 82 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGK 82 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGG
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHh
Confidence 355555432 1289999999999 99999999999999999999999999999999999998765432 1
Q ss_pred HHhHceEEeccC
Q 003976 450 LREQMGLVSQEP 461 (782)
Q Consensus 450 lR~~i~~V~Q~~ 461 (782)
++..+.++.+++
T Consensus 83 ~~~~~~~~~~~~ 94 (483)
T 3euj_A 83 LKAGVCYAVLET 94 (483)
T ss_dssp SCSSEEEEEEEE
T ss_pred cCCCceEEEEeh
Confidence 233456666664
No 159
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.90 E-value=6.4e-12 Score=138.99 Aligned_cols=170 Identities=16% Similarity=0.166 Sum_probs=108.4
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHc------------CCCCCccEEEECCeeCCCcCH-HHHHhHc---eEEeccCCC
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQR------------LYEPTSGKILLDGHDLKSLQL-KWLREQM---GLVSQEPAL 463 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~------------~~~~~~G~I~i~g~di~~~~~-~~lR~~i---~~V~Q~~~l 463 (782)
++++|..++|||++|+|||||+++|.| ..+|+.|.|.++|..+..+.. ..-++.+ ..+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 678999999999853221100 0001112 355666665
Q ss_pred ccc-cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCC--ceEEEeC
Q 003976 464 FAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP--KILLLDE 540 (782)
Q Consensus 464 f~~-Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p--~illLDE 540 (782)
..+ |..|++ . .+....++.+.+--++... .+ ......+||+. || +|+++||
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~d~il~Vvd~---~~---d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAVDAIYQVVRA---FD---DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTCSEEEEEEEC---CC---TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHHHHHHHHHhc---cc---cceeeeecccc------------Ccchhhhhchh
Confidence 543 222211 1 1222222222211111111 11 11222345542 99 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH-hC-CCeEEEEecCcchhhh-cCEEE-EEeCC-EEEEecChh
Q 003976 541 ATSALDAESELIVQRALEKI-MS-NRTTIVVAHRLSTVRD-VDTIM-VLKNG-QVVESGTHV 597 (782)
Q Consensus 541 ~tsalD~~~e~~i~~~l~~~-~~-~~T~i~iaHrl~~i~~-aD~I~-vl~~G-~ive~G~~~ 597 (782)
|++.+|++..+...+.+++. .+ |+|+ ++|.+..+.. ||+|. +|++| +++..|+.+
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 99999999888888888876 44 4553 3999988755 89999 99999 888766643
No 160
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.85 E-value=1.9e-09 Score=110.74 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=90.6
Q ss_pred ccccc-eEEeeCCCEEEEeCCCCCcHHHHHH-HHHcCCCCCccEEEECCeeCCCcCHHHHH---hHceEEeccCCCcccc
Q 003976 393 VFENL-NFSVDAGKTFAFVGPSGSGKSTIIS-MVQRLYEPTSGKILLDGHDLKSLQLKWLR---EQMGLVSQEPALFATS 467 (782)
Q Consensus 393 vL~~i-sl~i~~G~~vaivG~sGsGKSTl~~-ll~~~~~~~~G~I~i~g~di~~~~~~~lR---~~i~~V~Q~~~lf~~T 467 (782)
.|+++ .--+++|+.++|+||+||||||++. ++....++..+.+.+++.. +...++ .++++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 46665 5579999999999999999999955 5455555555566666532 233332 345555554210
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc--cCCceEEEeCCCCCC
Q 003976 468 IANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL--RNPKILLLDEATSAL 545 (782)
Q Consensus 468 i~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~--~~p~illLDE~tsal 545 (782)
.+|+.+-. ...+ .+..+++ .+..+-+. +....+....++.++ .+|+++++|++++-+
T Consensus 83 -~~~l~~~~--~~~~-------------~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 83 -KGMFAMVD--AFTA-------------GIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp -HTSEEEEE--CSTT-------------TTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGT
T ss_pred -CCcEEEEe--cchh-------------hcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhh
Confidence 01111110 0000 0000000 00001111 112333344444444 479999999999988
Q ss_pred --CHHHHHHHHHHHHHH--hCCCeEEEEecCcch---------hhhcCEEEEEeC
Q 003976 546 --DAESELIVQRALEKI--MSNRTTIVVAHRLST---------VRDVDTIMVLKN 587 (782)
Q Consensus 546 --D~~~e~~i~~~l~~~--~~~~T~i~iaHrl~~---------i~~aD~I~vl~~ 587 (782)
|+.....+...+.+. ..|.|+|+++|.... ...||.|+.|+.
T Consensus 142 ~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 142 INKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 554333444444443 357899999998765 245899999975
No 161
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.85 E-value=9.8e-12 Score=135.23 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=98.5
Q ss_pred EeEEEEcCCCCCcccccceEEeeCC-------CEEEEeCCCCCcHHHHHHHHHcCC----CCCccEEEECCeeCCCcCHH
Q 003976 380 SEVCFAYPSRPHMVFENLNFSVDAG-------KTFAFVGPSGSGKSTIISMVQRLY----EPTSGKILLDGHDLKSLQLK 448 (782)
Q Consensus 380 ~~v~f~y~~~~~~vL~~isl~i~~G-------~~vaivG~sGsGKSTl~~ll~~~~----~~~~G~I~i~g~di~~~~~~ 448 (782)
++++..|.. +.+++++++.+++| +.++|+||+|+|||||+++|.+.+ .|.+|.+..++.++..+...
T Consensus 22 ~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 22 KSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred ccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 344444532 34899999999887 899999999999999999999998 67788887777665433211
Q ss_pred HHHhHceEEeccCCCccccHHHHHhcCCCCCCHHHH---HHHHHHhhhHhHHhcCCC-CccccccCCCCCCCHHHHHHHH
Q 003976 449 WLREQMGLVSQEPALFATSIANNILLGKEDASMDRV---IEAAKAANAHSFVEGLPD-GYQTQVGEGGTQLSGGQKQRIA 524 (782)
Q Consensus 449 ~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~~~~~~i---~~a~~~a~~~~~i~~lp~-G~~t~vge~G~~LSgGQkQRia 524 (782)
..+..|.++.|...++. ++.|++....++...+-+ ....+. +.. .+|. ++.. ...+...||+|+|||++
T Consensus 100 ~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~--i~~---~l~~~~li~-at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKS--IRI---DIQPFTLVG-ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp CCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------CCCEEEE-EESCGGGSCHHHHTTCS
T ss_pred ccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccccc--ccc---cCCCeEEEE-ecCCcccCCHHHHHhcC
Confidence 12456999999887776 788877432111100000 000010 011 1111 1111 12233589999999986
Q ss_pred HHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 003976 525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561 (782)
Q Consensus 525 iARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~ 561 (782)
++ ..||+.+...+.+.|++..
T Consensus 173 l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 173 II----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp EE----------------EECCCCCHHHHHHHHHHHH
T ss_pred ce----------------eeCCCCCHHHHHHHHHHHH
Confidence 55 6778877777887777653
No 162
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.82 E-value=1.7e-10 Score=131.49 Aligned_cols=158 Identities=17% Similarity=0.225 Sum_probs=96.7
Q ss_pred cceEEeeCCCEEEEeCCCCCcHHHHHHHHHc--CCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCcc---ccH--
Q 003976 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQR--LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA---TSI-- 468 (782)
Q Consensus 396 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~~--~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~---~Ti-- 468 (782)
.+++++.+|..+.|+|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. -|+++. ...
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4788899999999999999999999999876 67777788988888877654433321 133321 011
Q ss_pred -HHHHhcCCCCCCHHHHH---HHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHH----------HHHHHhccCCc
Q 003976 469 -ANNILLGKEDASMDRVI---EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI----------AIARAVLRNPK 534 (782)
Q Consensus 469 -~eNi~~g~~~~~~~~i~---~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRi----------aiARAl~~~p~ 534 (782)
.+++.. ..+|++ +.++..++.++- +|+..+. ..+||||+||. ++|+++...|.
T Consensus 232 a~~~L~~-----~~~EmerR~~ll~~~Gv~~i~-----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 232 AANALRW-----CVNEMERRYKLMSALGVRNLA-----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHTTCSSHH-----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHcCCccHH-----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCc
Confidence 111111 011111 122222221111 2222221 24688888752 46788888998
Q ss_pred -eEEEeCCCCCCCHHHHHHHHHHHHHH----h-CCCeEEEEecCcc
Q 003976 535 -ILLLDEATSALDAESELIVQRALEKI----M-SNRTTIVVAHRLS 574 (782)
Q Consensus 535 -illLDE~tsalD~~~e~~i~~~l~~~----~-~~~T~i~iaHrl~ 574 (782)
++++||+++.+|... +.+.+.|.++ + .|.++|++|||++
T Consensus 299 ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 788999999988432 3445555433 2 2679999999998
No 163
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.82 E-value=4.1e-10 Score=120.60 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=45.7
Q ss_pred EEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEE---CCeeCCCcCHHHHHhHceEEeccCCCcc-----ccHHH
Q 003976 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL---DGHDLKSLQLKWLREQMGLVSQEPALFA-----TSIAN 470 (782)
Q Consensus 399 l~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i---~g~di~~~~~~~lR~~i~~V~Q~~~lf~-----~Ti~e 470 (782)
+++.+|++++|+||||+|||||+|+|.|...|..|+|.+ +|+++.... ..++..+++|+|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 898876543 222333899999997654 478 9
Q ss_pred HHh
Q 003976 471 NIL 473 (782)
Q Consensus 471 Ni~ 473 (782)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 994
No 164
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.82 E-value=1.5e-08 Score=110.73 Aligned_cols=143 Identities=19% Similarity=0.319 Sum_probs=85.9
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccE-EEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcCCCC
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK-ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED 478 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~-I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g~~~ 478 (782)
-+++|+.+.|.||+|||||||+..+........|. ++++... ..+. ...+++++.+|+..++ .+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~i~-----------~~- 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLLVS-----------QP- 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCEEE-----------CC-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeEEe-----------cC-
Confidence 48899999999999999999988777555444343 3444421 1111 1223333332221110 01
Q ss_pred CCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccC--CceEEEeCCCCCC----------C
Q 003976 479 ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN--PKILLLDEATSAL----------D 546 (782)
Q Consensus 479 ~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~--p~illLDE~tsal----------D 546 (782)
.++ .|-+.++++++++ |+++++||+++-+ |
T Consensus 122 ------------------------------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 122 ------------------------------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp ------------------------------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred ------------------------------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 011 2334578888765 9999999999998 3
Q ss_pred H---HHHHHHHHHHHHH-----hCCCeEEEEecCcch----------------h-hhcCEEEEEeCCEEEEecC
Q 003976 547 A---ESELIVQRALEKI-----MSNRTTIVVAHRLST----------------V-RDVDTIMVLKNGQVVESGT 595 (782)
Q Consensus 547 ~---~~e~~i~~~l~~~-----~~~~T~i~iaHrl~~----------------i-~~aD~I~vl~~G~ive~G~ 595 (782)
+ ...+.+.+.++++ ..+.|+|+++|-... + ..||.++.++.+++...|+
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2 1222344444443 248899999995431 3 3489888888887765554
No 165
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.81 E-value=5.3e-10 Score=111.09 Aligned_cols=142 Identities=19% Similarity=0.158 Sum_probs=77.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCC-----------CccEEEECCeeCCC--cCHHHHHhHceEEeccCCCccc--cHHH
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEP-----------TSGKILLDGHDLKS--LQLKWLREQMGLVSQEPALFAT--SIAN 470 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~-----------~~G~I~i~g~di~~--~~~~~lR~~i~~V~Q~~~lf~~--Ti~e 470 (782)
+++|+|++|||||||++.+.+...| ..|+|.++|.++.- ++....++..++++|...-..+ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57999999976531 2211122223333332110000 1111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCc-cccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHH
Q 003976 471 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY-QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549 (782)
Q Consensus 471 Ni~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~-~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~ 549 (782)
+... .+.+++....+. +.+. -+... --.++.+ ..|..-..+...+||++.++|+++++| |||+|.++
T Consensus 111 ~~~~----~s~~~~~~~~~~--~~~~---~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 IAKH----LTYENVERWLKE--LRDH---ADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp TTCH----HHHHTHHHHHHH--HHHH---SCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred CcCH----HHHHHHHHHHHH--HHHh---cCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 0000 001111111110 0000 00000 0111221 112221223478899999999999999 99999998
Q ss_pred HHHHHHHHHH
Q 003976 550 ELIVQRALEK 559 (782)
Q Consensus 550 e~~i~~~l~~ 559 (782)
...+.+.|.+
T Consensus 179 v~~l~~~l~~ 188 (191)
T 1oix_A 179 VEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 166
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.75 E-value=1.2e-09 Score=107.68 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=62.6
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCC-CccEEE----------ECCeeCCCcCHHHHHhHceEEeccCCCccccHHHH
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEP-TSGKIL----------LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 471 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~-~~G~I~----------i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eN 471 (782)
+|++++|+||||||||||+++|.+++++ ..|.|. ++|.++..++.+.+++. +.|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6999999999999999999999999874 445543 47888888888888875 568889999999999
Q ss_pred HhcCCCCCCHHHHHHHH
Q 003976 472 ILLGKEDASMDRVIEAA 488 (782)
Q Consensus 472 i~~g~~~~~~~~i~~a~ 488 (782)
.||.+ .+.+.+++
T Consensus 81 -~yg~~---~~~i~~~l 93 (180)
T 1kgd_A 81 -MYGTK---LETIRKIH 93 (180)
T ss_dssp -EEEEE---HHHHHHHH
T ss_pred -ccccc---HHHHHHHH
Confidence 57754 44455544
No 167
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.74 E-value=2.4e-10 Score=134.07 Aligned_cols=156 Identities=15% Similarity=0.196 Sum_probs=101.4
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCc-cEEEECCeeCCCcCHHHHHhHceEEeccC---------
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS-GKILLDGHDLKSLQLKWLREQMGLVSQEP--------- 461 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~-G~I~i~g~di~~~~~~~lR~~i~~V~Q~~--------- 461 (782)
.+++++++.+++|+.+.|+||+||||||++++|.++.++.. |.+.+++.+....+ ..++++||..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecchHHHHHHHHH
Confidence 48999999999999999999999999999999999999988 88999888776543 3477777653
Q ss_pred -------------CCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHH
Q 003976 462 -------------ALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527 (782)
Q Consensus 462 -------------~lf~-~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiAR 527 (782)
+.|. .++.+|+..++.......+... ......+.+..+. ++ ......+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~--~~---~~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVR--HD---PFQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEEC--CC---CC----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEE--ec---hhhcCCccccccccccCce
Confidence 1111 1233333322110000000000 0000111121110 00 1122358999999999999
Q ss_pred HhccCCceEEEeCCCCCCCHHHHHHHHHHHHH
Q 003976 528 AVLRNPKILLLDEATSALDAESELIVQRALEK 559 (782)
Q Consensus 528 Al~~~p~illLDE~tsalD~~~e~~i~~~l~~ 559 (782)
....++.+|+|||... |++.....+.+.|++
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 798888888888864
No 168
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.73 E-value=2.6e-09 Score=126.41 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=94.0
Q ss_pred eEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC--CccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhc-
Q 003976 398 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP--TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILL- 474 (782)
Q Consensus 398 sl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~--~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~- 474 (782)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.|++.+|.+.++..+++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987765 77998 89999999999999999999999999988877777753
Q ss_pred -CCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHH
Q 003976 475 -GKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553 (782)
Q Consensus 475 -g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i 553 (782)
|..+. ..++..+++. .|+.++++| |+.++|+.++..+
T Consensus 82 pG~~~f-~~~~~~~l~~----------------------------------------ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 PGYGDF-VGEIRGALEA----------------------------------------ADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp CCSGGG-HHHHHHHHHH----------------------------------------CSEEEEEEE-TTTCSCHHHHHHH
T ss_pred CCccch-HHHHHHHHhh----------------------------------------cCcEEEEEc-CCcccchhHHHHH
Confidence 32211 1223333322 344566666 7777777666544
Q ss_pred HHHHHHHhCCCeEEEEecCcch
Q 003976 554 QRALEKIMSNRTTIVVAHRLST 575 (782)
Q Consensus 554 ~~~l~~~~~~~T~i~iaHrl~~ 575 (782)
..+.. .+.++|++.|.++.
T Consensus 120 ~~~~~---~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 120 TVAER---LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHH---TTCCEEEEEECGGG
T ss_pred HHHHH---ccCCEEEEecCCch
Confidence 43322 35666677776654
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.73 E-value=2.5e-08 Score=112.83 Aligned_cols=172 Identities=11% Similarity=0.148 Sum_probs=111.1
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc-EEEECCeeCCCcCHHHHHhHc-----eEEeccCCCccc
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-KILLDGHDLKSLQLKWLREQM-----GLVSQEPALFAT 466 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G-~I~i~g~di~~~~~~~lR~~i-----~~V~Q~~~lf~~ 466 (782)
.|+++..-+++|+.+.|.|++|+||||++..+++...+..| .|.+-+. +.+...+++++ ++.+|
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~~~------- 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNINAQ------- 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCCHH-------
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCCHH-------
Confidence 68888878999999999999999999999999988776545 5665543 34555555442 22222
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhc--cCCceEEEeCCCCC
Q 003976 467 SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL--RNPKILLLDEATSA 544 (782)
Q Consensus 467 Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~--~~p~illLDE~tsa 544 (782)
++.-|. .++++..+..+.. +.+...| -.+-+ ...+|++|.+ +.||++. .+|+++++|+++.-
T Consensus 262 ----~l~~g~--l~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 262 ----NLRTGK--LTPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp ----HHHTSC--CCHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred ----HHhcCC--CCHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 233332 3455544333222 2233222 11222 2478999876 6677776 57999999999998
Q ss_pred CCHH--------HHHHHHHHHHHHh--CCCeEEEEec-----------Ccc--------hh-hhcCEEEEEeCCEE
Q 003976 545 LDAE--------SELIVQRALEKIM--SNRTTIVVAH-----------RLS--------TV-RDVDTIMVLKNGQV 590 (782)
Q Consensus 545 lD~~--------~e~~i~~~l~~~~--~~~T~i~iaH-----------rl~--------~i-~~aD~I~vl~~G~i 590 (782)
.++. .-..+.+.|+++. .+.|+|+++| |+. .+ ..||.|++|..++.
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 7431 1144555565553 3789999999 132 33 35999999987764
No 170
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.73 E-value=2.5e-10 Score=117.08 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=50.8
Q ss_pred cEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHH-------
Q 003976 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK------- 448 (782)
Q Consensus 376 ~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~------- 448 (782)
.|+++|+...|. . ++++++ ++++|+||||||||||+++|.|++.|++|+|.++|.++...+..
T Consensus 9 ~l~l~~~~~~~~-----~----~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFA-----R----TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEE-----E----EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccC-----C----EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 478888865552 1 466666 89999999999999999999999999999999999998543322
Q ss_pred -HHHhHceEEecc
Q 003976 449 -WLREQMGLVSQE 460 (782)
Q Consensus 449 -~lR~~i~~V~Q~ 460 (782)
.+|..+++|+|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 235678888884
No 171
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.66 E-value=3.2e-10 Score=124.87 Aligned_cols=133 Identities=18% Similarity=0.265 Sum_probs=88.2
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 472 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi 472 (782)
+|+++++.+++|+.++|+||+|||||||+++|.+.+ +|.+..-+ .. .+.++..+++++|...+| .|++
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~---~~~~~~~lg~~~q~~~~l----~dd~ 225 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LP---LDRLNFELGVAIDQFLVV----FEDV 225 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SC---TTTHHHHHGGGTTCSCEE----ETTC
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--cc---chhHHHHHHHhcchhHHH----HHHH
Confidence 899999999999999999999999999999999964 67776511 11 122344588999987643 2333
Q ss_pred hcCCC---CC-CHHHHHHHHHHhhhHhHHhc-----------------CCCCccccccCCCCCCCHHHHHHHHHHHHhcc
Q 003976 473 LLGKE---DA-SMDRVIEAAKAANAHSFVEG-----------------LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531 (782)
Q Consensus 473 ~~g~~---~~-~~~~i~~a~~~a~~~~~i~~-----------------lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~ 531 (782)
....+ .. ..+.+. ....+.+.+.. +|.| .+.++-..+++|.+||++.+.+++.
T Consensus 226 ~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l~~ 299 (377)
T 1svm_A 226 KGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDFRP 299 (377)
T ss_dssp CCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEECCC
T ss_pred HHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhccCC
Confidence 33221 00 000110 11122222210 1112 2344556789999999999999999
Q ss_pred CCceEE-EeCCCC
Q 003976 532 NPKILL-LDEATS 543 (782)
Q Consensus 532 ~p~ill-LDE~ts 543 (782)
+|++++ ||+|+.
T Consensus 300 ~pDLliyLd~~~~ 312 (377)
T 1svm_A 300 KDYLKHCLERSEF 312 (377)
T ss_dssp CHHHHHHHHTCTH
T ss_pred CCCeEEEEeCCHH
Confidence 999999 999987
No 172
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.64 E-value=3.5e-09 Score=106.54 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=65.4
Q ss_pred cceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHHhcC
Q 003976 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG 475 (782)
Q Consensus 396 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi~~g 475 (782)
++-=++++|++++|+|++||||||++++|.+.++ .+.+++||+.++++ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 4445678899999999999999999999999885 38999999999976 677665
Q ss_pred CCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCC
Q 003976 476 KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 542 (782)
Q Consensus 476 ~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~t 542 (782)
.+...+.++.++.+...+.+++..+.++. + -..++.|.++ ..+++++|+|=|.
T Consensus 67 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~---~---~~~~~~~~~~--------~~~~~~vi~eg~~ 119 (207)
T 2qt1_A 67 KNGFLQYDVLEALNMEKMMSAISCWMESA---R---HSVVSTDQES--------AEEIPILIIEGFL 119 (207)
T ss_dssp TTSCBCCSSGGGBCHHHHHHHHHHHHHHH---T---TSSCCC-------------CCCCEEEEECTT
T ss_pred ccCCChhHHHHHhHHHHHHHHHHHHHhCC---C---CCCcCCCeee--------cCCCCEEEEeehH
Confidence 43322222223333333444443321111 0 0134455443 4567888887654
No 173
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.60 E-value=5.2e-09 Score=105.73 Aligned_cols=72 Identities=24% Similarity=0.254 Sum_probs=57.2
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCC-CccEEE----------ECCeeCCCcCHHHHHhHceEEeccCCCccccHHH
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEP-TSGKIL----------LDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 470 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~-~~G~I~----------i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~e 470 (782)
++|++++|+|||||||||++++|.+.++| ..+.+. .+|.+....+...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999987 444333 467777777888888775 5777888888877
Q ss_pred HHhcCCC
Q 003976 471 NILLGKE 477 (782)
Q Consensus 471 Ni~~g~~ 477 (782)
| .||.+
T Consensus 83 ~-~yg~~ 88 (208)
T 3tau_A 83 N-YYGTP 88 (208)
T ss_dssp E-EEEEE
T ss_pred c-cCCCc
Confidence 7 56654
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.53 E-value=2e-08 Score=100.06 Aligned_cols=138 Identities=20% Similarity=0.223 Sum_probs=72.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC-----CCC------ccEEEECCeeCC----CcC-HHHHHhHceEEeccCC--C--cc
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY-----EPT------SGKILLDGHDLK----SLQ-LKWLREQMGLVSQEPA--L--FA 465 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~-----~~~------~G~I~i~g~di~----~~~-~~~lR~~i~~V~Q~~~--l--f~ 465 (782)
+++|+|++|||||||++.+.|.. .|+ .|+|.++|.++. +.. .+.+|+......|+.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 243 689999997652 221 1222222222222221 1 11
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCC
Q 003976 466 TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544 (782)
Q Consensus 466 ~Ti~eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsa 544 (782)
.+-.. +.+++....+. +.+. .+.+.- -.++.+- .|..-.......||++.++|+++++| |||
T Consensus 87 ~~~~~---------s~~~~~~~~~~--~~~~---~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sa 149 (199)
T 2f9l_A 87 IAKHL---------TYENVERWLKE--LRDH---ADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE--TSA 149 (199)
T ss_dssp TTCHH---------HHHTHHHHHHH--HHHH---SCTTCEEEEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred CcCHH---------HHHHHHHHHHH--HHHh---cCCCCeEEEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--EeC
Confidence 11100 01111111110 0000 000100 1112111 11110111245699999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 003976 545 LDAESELIVQRALEKI 560 (782)
Q Consensus 545 lD~~~e~~i~~~l~~~ 560 (782)
+|..+...+.+.|.+.
T Consensus 150 l~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 150 LDSTNVEEAFKNILTE 165 (199)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999888887777553
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.48 E-value=2.1e-08 Score=100.24 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=39.9
Q ss_pred EEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc-EEEECCeeCCCcCHHHHHhHceEEeccCC
Q 003976 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-KILLDGHDLKSLQLKWLREQMGLVSQEPA 462 (782)
Q Consensus 399 l~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G-~I~i~g~di~~~~~~~lR~~i~~V~Q~~~ 462 (782)
++|++|++++|+|||||||||++++|.+++.|+.| .+ +...++... ..+..+++++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i---~~~~~~~~~-~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSI---SMTTRQMRE-GEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCC---CEECSCCCT-TCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEec---ccccCCCCC-CccCCCceEEcCHH
Confidence 46889999999999999999999999999977666 33 222222111 11223777777653
No 176
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.48 E-value=3.6e-08 Score=98.72 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=45.9
Q ss_pred eEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCc
Q 003976 398 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALF 464 (782)
Q Consensus 398 sl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf 464 (782)
.++.++|++++|+|||||||||++++|.+.+ |.+.+||.++..- ....+..+++++|++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccc
Confidence 4667899999999999999999999999988 8999999887532 122334678888875443
No 177
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.46 E-value=2.6e-07 Score=104.76 Aligned_cols=113 Identities=25% Similarity=0.372 Sum_probs=76.7
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 472 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi 472 (782)
.++++++++++| +.|+||+|+||||+++++.+..... + +.-+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~------------------------f-------~~is----- 81 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP------------------------F-------FHIS----- 81 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC------------------------E-------EEEE-----
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC------------------------e-------eeCC-----
Confidence 677888888888 8999999999999999999843110 0 0000
Q ss_pred hcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCC---------
Q 003976 473 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS--------- 543 (782)
Q Consensus 473 ~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~ts--------- 543 (782)
..+++.. .+| .|++++|-.+++|....|.||++||+.+
T Consensus 82 --------------------~~~~~~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 82 --------------------GSDFVEL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp --------------------GGGTTTC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred --------------------HHHHHHH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 0111110 112 2788999999999999999999999943
Q ss_pred -CCCHHHHHHHHHHHHHHh-----CCCeEEEEecCcchh
Q 003976 544 -ALDAESELIVQRALEKIM-----SNRTTIVVAHRLSTV 576 (782)
Q Consensus 544 -alD~~~e~~i~~~l~~~~-----~~~T~i~iaHrl~~i 576 (782)
+.|.+.++.+.+.+..+. .+..+|..||+.+.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 566666666665555441 356788889998655
No 178
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.45 E-value=8.9e-09 Score=118.77 Aligned_cols=72 Identities=25% Similarity=0.312 Sum_probs=56.3
Q ss_pred EEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc-EEE-ECCeeCCC-------cCH---HHHHhHceEEeccCCCccc
Q 003976 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-KIL-LDGHDLKS-------LQL---KWLREQMGLVSQEPALFAT 466 (782)
Q Consensus 399 l~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G-~I~-i~g~di~~-------~~~---~~lR~~i~~V~Q~~~lf~~ 466 (782)
..+++|++++|+|+||||||||+++|.+.+.|++| +|. +||.++.+ ++. ...++++++|.|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36889999999999999999999999999999987 784 99987643 222 23456789999972
Q ss_pred cHHHHHhcC
Q 003976 467 SIANNILLG 475 (782)
Q Consensus 467 Ti~eNi~~g 475 (782)
+..+|+.+.
T Consensus 439 ~~~~~ivi~ 447 (552)
T 3cr8_A 439 TKNRGIAIC 447 (552)
T ss_dssp HHTTCEEEE
T ss_pred HhcCCEEEE
Confidence 455666553
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.45 E-value=6.9e-08 Score=105.81 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=36.4
Q ss_pred cccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHc--CCCCCccEEEECCe
Q 003976 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR--LYEPTSGKILLDGH 440 (782)
Q Consensus 392 ~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~--~~~~~~G~I~i~g~ 440 (782)
.+|+++++++| .++|||++|||||||++.|.| ++++.+|.++-.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 38999999998 999999999999999999999 77888887765544
No 180
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.45 E-value=1.5e-07 Score=103.43 Aligned_cols=142 Identities=13% Similarity=0.259 Sum_probs=84.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCC-----------CCccEEEECCeeCCCcCHHHHHhHceEEeccCCC----ccccHHH
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYE-----------PTSGKILLDGHDLKSLQLKWLREQMGLVSQEPAL----FATSIAN 470 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~-----------~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~l----f~~Ti~e 470 (782)
.++|||++|+|||||++.|.|... |..|.|.++|.++.-+ ...|++.|.|.- |..|. +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~------DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV------DTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE------ECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE------eCCCchhcCCHHHHHHHHHHH-H
Confidence 499999999999999999999765 6789999999776322 246776664432 33332 2
Q ss_pred HHhcCC-----CCCCHHH--HHHHHHHhhhHhHHhcC--CCCccccccCCCCCCCHHHHHHHHHH----HHh-ccCCceE
Q 003976 471 NILLGK-----EDASMDR--VIEAAKAANAHSFVEGL--PDGYQTQVGEGGTQLSGGQKQRIAIA----RAV-LRNPKIL 536 (782)
Q Consensus 471 Ni~~g~-----~~~~~~~--i~~a~~~a~~~~~i~~l--p~G~~t~vge~G~~LSgGQkQRiaiA----RAl-~~~p~il 536 (782)
.+.-.. -++++.. ..+..+. ..+.+..+ ++----.|+.+--.+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 222110 0111111 1111111 11222211 11111233555556788899988877 776 555565
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHH
Q 003976 537 LLDEATSALDAESELIVQRALEKI 560 (782)
Q Consensus 537 lLDE~tsalD~~~e~~i~~~l~~~ 560 (782)
+||||+|.++-..+.+.|.+.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHH
Confidence 799999999888888888664
No 181
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.41 E-value=2.7e-08 Score=103.62 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=36.0
Q ss_pred cEEEEeE-EEEcCCCCCcccccceEEeeC---CCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 376 QIEFSEV-CFAYPSRPHMVFENLNFSVDA---GKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 376 ~i~~~~v-~f~y~~~~~~vL~~isl~i~~---G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
.++++|+ +|+|.+ ...+|+|+||+|++ |+.++|+|++||||||+.++|.+.+.
T Consensus 17 ~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999 999932 23499999999999 99999999999999999999998653
No 182
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.41 E-value=1.1e-08 Score=102.62 Aligned_cols=50 Identities=28% Similarity=0.482 Sum_probs=45.3
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEE--EECCeeCC
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI--LLDGHDLK 443 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I--~i~g~di~ 443 (782)
+.+..++..++|++++|+|||||||||++++|.+.+. ..|.+ .+||.+++
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 6788899999999999999999999999999999997 77988 99987654
No 183
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.40 E-value=8.4e-09 Score=117.56 Aligned_cols=139 Identities=18% Similarity=0.246 Sum_probs=99.0
Q ss_pred EEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEE
Q 003976 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 457 (782)
Q Consensus 378 ~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V 457 (782)
+++++...|.. ..+++++++++++| +.|+||+|+|||||+++|.+... .|.+.++|.++.+......++++..+
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 34455444532 23899999999999 99999999999999999999885 78999999998776666667778888
Q ss_pred eccCC-Cccc-cHHHHH-hcCCCCC-----CHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHh
Q 003976 458 SQEPA-LFAT-SIANNI-LLGKEDA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529 (782)
Q Consensus 458 ~Q~~~-lf~~-Ti~eNi-~~g~~~~-----~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl 529 (782)
+|+.. ...+ .+.||| .++.... ..++..+.+ ..++. .|||||+|+..|++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEe
Confidence 88874 3333 556777 3442111 122222222 11221 3678889999999999
Q ss_pred ccCCceEEEeCCCCC
Q 003976 530 LRNPKILLLDEATSA 544 (782)
Q Consensus 530 ~~~p~illLDE~tsa 544 (782)
..+|++ ||||.-.
T Consensus 176 tn~p~~--LD~aLlr 188 (499)
T 2dhr_A 176 TNRPDI--LDPALLR 188 (499)
T ss_dssp CSCGGG--SCTTTSS
T ss_pred cCChhh--cCccccc
Confidence 999998 8998764
No 184
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.39 E-value=2.2e-08 Score=98.38 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=47.5
Q ss_pred ccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCe--eCCCcCHH----HHHhHceEEeccC
Q 003976 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH--DLKSLQLK----WLREQMGLVSQEP 461 (782)
Q Consensus 395 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~--di~~~~~~----~lR~~i~~V~Q~~ 461 (782)
+++++++.+| +++|+||||||||||+.+|.+++.+..|...-.+. ++-..... ..+..|.++.|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6889999999 99999999999999999999988887765433221 11111100 1345689999986
No 185
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.33 E-value=1.2e-07 Score=102.21 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=56.5
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH----HHH-----HhHceEE-eccC
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL----KWL-----REQMGLV-SQEP 461 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~----~~l-----R~~i~~V-~Q~~ 461 (782)
++++++|++++|++++++|++||||||++..|.+.+.+..|+|.+.+.|+..... ..+ +..+.++ +|.+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 3467888899999999999999999999999999999999999999999865542 333 5667888 6654
No 186
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.27 E-value=3.5e-07 Score=91.63 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchh---hhcCEEEEEe
Q 003976 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV---RDVDTIMVLK 586 (782)
Q Consensus 515 LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i---~~aD~I~vl~ 586 (782)
.+.|+.+|..+++.++.+|+.+-.+ ++.++|...+.+.+.+... .+.++|+-+|.+... +.||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3688999999999999998765443 3345666666665555432 356888888877653 5689999886
No 187
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=2.7e-07 Score=92.14 Aligned_cols=44 Identities=27% Similarity=0.197 Sum_probs=25.1
Q ss_pred EcCCCCCc-ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 385 AYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 385 ~y~~~~~~-vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+||+++.. +++|+||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56554443 999999999999999999999999999999999877
No 188
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.25 E-value=4.8e-07 Score=98.70 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=46.1
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEE-EECCeeCCCcCHHHHHhHceEEeccCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI-LLDGHDLKSLQLKWLREQMGLVSQEPA 462 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I-~i~g~di~~~~~~~lR~~i~~V~Q~~~ 462 (782)
+++|+++.|.||+|||||||+..+.+...+..|.+ ++++.+..+ ....+++++.+|+..
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLL 117 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhh
Confidence 88999999999999999999999999988877865 677654322 225567888776643
No 189
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.21 E-value=1.5e-06 Score=93.87 Aligned_cols=129 Identities=17% Similarity=0.317 Sum_probs=73.6
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCC-CC------CccEEEECCeeCCCcCHHHHHh---HceEEeccCCCccccHH
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLY-EP------TSGKILLDGHDLKSLQLKWLRE---QMGLVSQEPALFATSIA 469 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~-~~------~~G~I~i~g~di~~~~~~~lR~---~i~~V~Q~~~lf~~Ti~ 469 (782)
-+++|+.+.|.||+||||||++..++... .| ..+.++++...- ++.+.+++ ++++-++ .+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~-------~~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDID-------NVM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHH-------HHh
Confidence 58999999999999999999998887643 34 334566655421 22333222 2221111 112
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCH-HHHHHHHHHHHhc---cCCceEEEeCCCCCC
Q 003976 470 NNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG-GQKQRIAIARAVL---RNPKILLLDEATSAL 545 (782)
Q Consensus 470 eNi~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSg-GQkQRiaiARAl~---~~p~illLDE~tsal 545 (782)
+|+.+..+ .++ -+.+.+..+++++ .+|+++++|+.++-.
T Consensus 174 ~~l~~~~~-------------------------------------~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 174 NNIYYIRA-------------------------------------INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HTEEEEEC-------------------------------------CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred ccEEEEeC-------------------------------------CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 22222111 111 2345677777777 579999999999876
Q ss_pred CHH-------H--HHHHHHHH---HHHh--CCCeEEEEecCcc
Q 003976 546 DAE-------S--ELIVQRAL---EKIM--SNRTTIVVAHRLS 574 (782)
Q Consensus 546 D~~-------~--e~~i~~~l---~~~~--~~~T~i~iaHrl~ 574 (782)
+.+ + ...+.+.+ .++. .+.|+|++.|-..
T Consensus 217 ~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 217 RAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred hhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 432 1 12344443 3332 3788888888543
No 190
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.18 E-value=9.8e-08 Score=97.86 Aligned_cols=65 Identities=17% Similarity=0.098 Sum_probs=51.1
Q ss_pred ceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCc------CHHH----HHhHceEEeccCCCcc
Q 003976 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL------QLKW----LREQMGLVSQEPALFA 465 (782)
Q Consensus 397 isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~------~~~~----lR~~i~~V~Q~~~lf~ 465 (782)
-+.+.++|++++|+|++||||||++++|.+. .|+|.++|.|.... .... .++.+++++|++.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3445689999999999999999999999998 78999999886432 2221 2567899999876654
No 191
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.17 E-value=4.1e-06 Score=93.45 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=97.6
Q ss_pred EEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHH-HHhHce
Q 003976 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQMG 455 (782)
Q Consensus 377 i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~-lR~~i~ 455 (782)
+..++++..|.... ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+......+ |+.. +
T Consensus 77 ~v~~~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-~ 149 (425)
T 2ffh_A 77 TVYEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-G 149 (425)
T ss_dssp HHHHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-H
T ss_pred HHHHHHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-c
Confidence 34455666664321 567777 89999999999999999999999999999999999998887644332 2210 0
Q ss_pred EEeccCCCccccHHHHHhcC--CCCCCHHHH-HHHHHHhhhHhHHhcCCCCccccccCCCCCC---CHHHHHHHHHHHHh
Q 003976 456 LVSQEPALFATSIANNILLG--KEDASMDRV-IEAAKAANAHSFVEGLPDGYQTQVGEGGTQL---SGGQKQRIAIARAV 529 (782)
Q Consensus 456 ~V~Q~~~lf~~Ti~eNi~~g--~~~~~~~~i-~~a~~~a~~~~~i~~lp~G~~t~vge~G~~L---SgGQkQRiaiARAl 529 (782)
-+.|+.+- .+..+..++ .++.+.+. .++||..+=+-+..+ ..-..+..++++++
T Consensus 150 ------------~~~gv~v~~~~~~~~p~~i~~~~l~~~~--------~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~ 209 (425)
T 2ffh_A 150 ------------EKVGVPVLEVMDGESPESIRRRVEEKAR--------LEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (425)
T ss_dssp ------------HHHTCCEEECCTTCCHHHHHHHHHHHHH--------HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred ------------ccCCccEEecCCCCCHHHHHHHHHHHHH--------HCCCCEEEEcCCCcccccHHHHHHHHHhhhcc
Confidence 01121110 111233333 22222211 245665554433333 23466777888988
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEec
Q 003976 530 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 571 (782)
Q Consensus 530 ~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaH 571 (782)
..++-+|++| ++++.|.... + +.+.+ .-+.+-|++||
T Consensus 210 ~pd~vlLVvD-a~tgq~av~~--a-~~f~~-~l~i~GVIlTK 246 (425)
T 2ffh_A 210 GPDEVLLVLD-AMTGQEALSV--A-RAFDE-KVGVTGLVLTK 246 (425)
T ss_dssp CCSEEEEEEE-GGGTTHHHHH--H-HHHHH-HTCCCEEEEES
T ss_pred CCceEEEEEe-ccchHHHHHH--H-HHHHh-cCCceEEEEeC
Confidence 7777788888 5566554422 1 22332 13467788876
No 192
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.16 E-value=1.9e-07 Score=101.69 Aligned_cols=56 Identities=16% Similarity=0.289 Sum_probs=50.5
Q ss_pred CCcCcEEEEeEEEEcCCCCCcccc--------------cceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 372 KLAGQIEFSEVCFAYPSRPHMVFE--------------NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 372 ~~~g~i~~~~v~f~y~~~~~~vL~--------------~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
..++.|.|+||+|.||.. ..+|+ |+++.+.+|++++|+||+|+|||||+++|.|+.
T Consensus 129 ~~~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 129 NARNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHTTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hhcCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 346789999999999964 34888 999999999999999999999999999999986
No 193
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.13 E-value=3.5e-06 Score=92.19 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHHHHhccCCceEEEe-CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEe--cCcc
Q 003976 512 GTQLSGGQKQRIAIARAVLRNPKILLLD-EATSALDAESELIVQRALEKIMSNRTTIVVA--HRLS 574 (782)
Q Consensus 512 G~~LSgGQkQRiaiARAl~~~p~illLD-E~tsalD~~~e~~i~~~l~~~~~~~T~i~ia--Hrl~ 574 (782)
...+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...++.+|+|. |++.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 3468999999887 66667788889999 9999999998777777777665588888888 5553
No 194
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.11 E-value=3.3e-06 Score=101.51 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHhccCCceEEEeCCCC-CCCHHHHHHHHHHHHHHhCC-CeEEE-EecCcchhh
Q 003976 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATS-ALDAESELIVQRALEKIMSN-RTTIV-VAHRLSTVR 577 (782)
Q Consensus 513 ~~LSgGQkQRiaiARAl~~~p~illLDE~ts-alD~~~e~~i~~~l~~~~~~-~T~i~-iaHrl~~i~ 577 (782)
.-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+.+..++ +++++ .||..+.+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 4578999999999999999999999999997 89988666666666555544 55555 388776654
No 195
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.06 E-value=9.4e-07 Score=102.14 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=47.7
Q ss_pred EEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECC
Q 003976 379 FSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 439 (782)
Q Consensus 379 ~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 439 (782)
++++..+|.. ..+++++++++ +|+.+.|+||+||||||++++|.+...+..|.|.++|
T Consensus 86 ~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 86 LEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3455555521 12788899988 8999999999999999999999999999888888777
No 196
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.05 E-value=6.6e-08 Score=96.24 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=27.6
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCee
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD 441 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~d 441 (782)
...++|+|++||||||+.++|.+. |-..+|.-+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 357999999999999999999986 666776644
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.05 E-value=1.1e-06 Score=85.43 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=41.5
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHh-HceEEecc
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE-QMGLVSQE 460 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~-~i~~V~Q~ 460 (782)
++|+.++|+|++||||||++++|.+.+ |.+.+|+.++.. ...+++ .+|++.|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 468999999999999999999999876 889999987753 222333 46766665
No 198
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.03 E-value=1.4e-06 Score=91.20 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=51.4
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEEeC
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 587 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl~~ 587 (782)
|++|||||..+|++++||||| |+++... +++....|.|+++++|..+....||++++|..
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~---~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVET---ALRAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHH---HHHHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHH---HHHHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 899999999999999999999 9887544 34444579999999999998888999988864
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.93 E-value=8.7e-06 Score=90.96 Aligned_cols=41 Identities=27% Similarity=0.308 Sum_probs=36.8
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 443 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~ 443 (782)
++..++++|++||||||++..|.+.+.+..++|.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 47899999999999999999999999999899988777754
No 200
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.91 E-value=1.6e-05 Score=86.13 Aligned_cols=121 Identities=14% Similarity=0.205 Sum_probs=76.3
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 472 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi 472 (782)
-|+.+.--+++|+.+.|.|++|+||||++.-++.-.....+. +.|++=
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fSl------------- 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFSL------------- 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEES-------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEeC-------------
Confidence 466665568999999999999999999998876554322222 333221
Q ss_pred hcCCCCCCHHHHHHHHHH--hh--hHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCCCCHH
Q 003976 473 LLGKEDASMDRVIEAAKA--AN--AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548 (782)
Q Consensus 473 ~~g~~~~~~~~i~~a~~~--a~--~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsalD~~ 548 (782)
+.+.+++..-+-. ++ +++.. .| .||++++||++.|...+.+++++|.|+|...+|
T Consensus 83 -----Ems~~ql~~Rlls~~~~v~~~~l~-------------~g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-- 141 (338)
T 4a1f_A 83 -----EMSAEQLALRALSDLTSINMHDLE-------------SG-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-- 141 (338)
T ss_dssp -----SSCHHHHHHHHHHHHHCCCHHHHH-------------HT-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH--
T ss_pred -----CCCHHHHHHHHHHHhhCCCHHHHh-------------cC-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH--
Confidence 1344444332211 11 11111 12 699999999999999999999999999865543
Q ss_pred HHHHHHHHHHHHh--C-CCeEEEE
Q 003976 549 SELIVQRALEKIM--S-NRTTIVV 569 (782)
Q Consensus 549 ~e~~i~~~l~~~~--~-~~T~i~i 569 (782)
.+...++++. . +..+|+|
T Consensus 142 ---~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 142 ---QIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp ---HHHHHHHHHHHHCTTEEEEEE
T ss_pred ---HHHHHHHHHHHhcCCCCEEEE
Confidence 3333344332 2 4555555
No 201
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.84 E-value=4.7e-05 Score=83.13 Aligned_cols=44 Identities=16% Similarity=0.078 Sum_probs=32.3
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh----CCCeEEEEecCcch
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIM----SNRTTIVVAHRLST 575 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~----~~~T~i~iaHrl~~ 575 (782)
.+|.+++|||+... |......+.+.+.+.. .+.++|+++|+...
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45889999999887 8777666666665433 36678888998754
No 202
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.83 E-value=3.8e-06 Score=84.00 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=41.5
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCH
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL 447 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~ 447 (782)
..++|++++|+|+|||||||+++.|.+.+++..|.|.+.+.|....+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 467899999999999999999999999999999999888777655443
No 203
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.77 E-value=5.4e-06 Score=89.15 Aligned_cols=123 Identities=12% Similarity=0.240 Sum_probs=71.3
Q ss_pred ccccceEEeeCCC------EEEEeCCCCCcHHHHHHHHHcCCC--CCccEEEECCeeCCCcCHHHHHhHceEEeccCCCc
Q 003976 393 VFENLNFSVDAGK------TFAFVGPSGSGKSTIISMVQRLYE--PTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALF 464 (782)
Q Consensus 393 vL~~isl~i~~G~------~vaivG~sGsGKSTl~~ll~~~~~--~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf 464 (782)
.|++++..+.+++ ++||+|||||||||++++|.++++ |++|. ++++++|.+..
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~~ 135 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFLY 135 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGBC
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeeccccc
Confidence 6888888887776 899999999999999999999998 45554 44455555444
Q ss_pred cccHHHHH----hcCCCCC-CHHHHHHHHHHhhhHhHHhcCCCCcc-ccccCCCCCCCHHHHHHHHHHHHhccCCceEEE
Q 003976 465 ATSIANNI----LLGKEDA-SMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLL 538 (782)
Q Consensus 465 ~~Ti~eNi----~~g~~~~-~~~~i~~a~~~a~~~~~i~~lp~G~~-t~vge~G~~LSgGQkQRiaiARAl~~~p~illL 538 (782)
+....+.. .+|.|+. +.+...+.+ ..+..|-+ ..+- ..|-+..+|+.-+...+..|+|+|+
T Consensus 136 ~~~~l~~~~~~~~~g~P~~~D~~~l~~~L---------~~L~~g~~~v~~P----~yd~~~~~r~~~~~~~v~~~dIVIv 202 (321)
T 3tqc_A 136 SNAKLEKQGLMKRKGFPESYDMPSLLRVL---------NAIKSGQRNVRIP----VYSHHYYDIVRGQYEIVDQPDIVIL 202 (321)
T ss_dssp CHHHHHHTTCGGGTTSGGGBCHHHHHHHH---------HHHHTTCSSEEEE----EEETTTTEEEEEEEEEECSCSEEEE
T ss_pred chhhhhhHHHHhhccCcccccHHHHHHHH---------Hhhhccccccccc----hhhhhccccccCceeeccCCCEEEE
Confidence 33322221 1344432 333333332 22223321 1100 1122222333323456678999999
Q ss_pred eCCCCCCCH
Q 003976 539 DEATSALDA 547 (782)
Q Consensus 539 DE~tsalD~ 547 (782)
+.+..-.|.
T Consensus 203 EGi~lL~~~ 211 (321)
T 3tqc_A 203 EGLNILQTG 211 (321)
T ss_dssp ECTTTTCCC
T ss_pred Ecccccccc
Confidence 998875543
No 204
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.76 E-value=6.1e-05 Score=79.49 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhccCCceEEEeCCCCCCCHHH----------HHHHHHHHHHHhC-----CCeEEEEecCcchh----
Q 003976 516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAES----------ELIVQRALEKIMS-----NRTTIVVAHRLSTV---- 576 (782)
Q Consensus 516 SgGQkQRiaiARAl~~~p~illLDE~tsalD~~~----------e~~i~~~l~~~~~-----~~T~i~iaHrl~~i---- 576 (782)
++++++|-.+++|...+|.+|++||+.+-++... ...+...++.... +..+|..|++...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3678888888999889999999999988765422 1223334443321 23456668876543
Q ss_pred -hhcCEEEEEe
Q 003976 577 -RDVDTIMVLK 586 (782)
Q Consensus 577 -~~aD~I~vl~ 586 (782)
+.+|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 3466665543
No 205
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.76 E-value=2.9e-05 Score=84.39 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=31.7
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcC--CCC-----CccEEEECCe
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRL--YEP-----TSGKILLDGH 440 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~--~~~-----~~G~I~i~g~ 440 (782)
-+++|+.+.|.||+||||||++..++.. .++ ..+.++++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 4889999999999999999999988775 322 2345566654
No 206
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=8.7e-06 Score=88.16 Aligned_cols=42 Identities=31% Similarity=0.436 Sum_probs=37.7
Q ss_pred cccccceEEeeCCCE--EEEeCCCCCcHHHHHHHHHcCCCCCcc
Q 003976 392 MVFENLNFSVDAGKT--FAFVGPSGSGKSTIISMVQRLYEPTSG 433 (782)
Q Consensus 392 ~vL~~isl~i~~G~~--vaivG~sGsGKSTl~~ll~~~~~~~~G 433 (782)
.+++.++..++.|+. +.+.||+|+||||+++++.+.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488999999999998 999999999999999999998766544
No 207
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.70 E-value=1.5e-05 Score=96.32 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=29.3
Q ss_pred EEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 399 l~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
|.+++|+.+.|+||+|||||||+++|.+.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998754
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.66 E-value=4.8e-06 Score=81.34 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=34.1
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc--EEEECCeeCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG--KILLDGHDLK 443 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G--~I~i~g~di~ 443 (782)
++|+.++|+|++||||||++++|.+.+.| .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998876 56 6777775443
No 209
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.61 E-value=0.00026 Score=72.28 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=24.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCCCcc
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEPTSG 433 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~~~G 433 (782)
.++|||++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999987766555
No 210
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.60 E-value=6.8e-05 Score=84.31 Aligned_cols=66 Identities=14% Similarity=0.263 Sum_probs=44.6
Q ss_pred CCceEEEeCCCCCCCH-HHHHHHHHHHHHHh-CCCeEEEEecCc-chhhh-cCEEEE-EeCCEEEEecChh
Q 003976 532 NPKILLLDEATSALDA-ESELIVQRALEKIM-SNRTTIVVAHRL-STVRD-VDTIMV-LKNGQVVESGTHV 597 (782)
Q Consensus 532 ~p~illLDE~tsalD~-~~e~~i~~~l~~~~-~~~T~i~iaHrl-~~i~~-aD~I~v-l~~G~ive~G~~~ 597 (782)
+|++|++||+..-.+. .++..+...++... .++++|++||+. ..+.. .+++.- ++.|.+++-+.++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999887765 56777878887654 578899999984 33321 122222 4567776666543
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.59 E-value=0.00023 Score=73.49 Aligned_cols=45 Identities=24% Similarity=0.450 Sum_probs=30.1
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCee
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD 441 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~d 441 (782)
.++++++.+++| +.|+||+|+||||++++|.+.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 344555555555 9999999999999999999887532 35566544
No 212
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.52 E-value=2.7e-05 Score=84.61 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=26.5
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEPT 431 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~~ 431 (782)
+++..+.|.||+|+|||||++.+.+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 567899999999999999999999887654
No 213
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.50 E-value=0.00072 Score=78.90 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=88.7
Q ss_pred cHHHHHHHcccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 668 SIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYF 747 (782)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 747 (782)
.+++++++.++.+++++++++++++.+++.++..++++.+++....... ......|.++++++.++..++.+++.++
T Consensus 24 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (598)
T 3qf4_B 24 TLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR---FDLLPRYMLILGTIYALTSLLFWLQGKI 100 (598)
T ss_dssp HHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888888888888888888888888888886543221 2334457778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccc
Q 003976 748 YTLMGEHLTARVRLSMFSGSFIFSFQFYILN 778 (782)
Q Consensus 748 ~~~~~~~~~~~lr~~~f~~il~~~~~fFd~n 778 (782)
+...+.++..++|.++|++++++|++||+.+
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~ 131 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRVPVGFFDRT 131 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC
Confidence 9999999999999999999999999999754
No 214
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.49 E-value=2.5e-05 Score=78.03 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=37.1
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC-CccEE----------EECCeeCCCcCHHHHHhH
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-TSGKI----------LLDGHDLKSLQLKWLREQ 453 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~-~~G~I----------~i~g~di~~~~~~~lR~~ 453 (782)
...+|..++|+|||||||||+++.|...++. ..+.+ .++|.+..-++.+.+++.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~ 72 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH
Confidence 3568999999999999999999999987743 22221 235555555555555544
No 215
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.49 E-value=0.00011 Score=74.97 Aligned_cols=132 Identities=16% Similarity=0.252 Sum_probs=73.3
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc-cHHHHHhcCCCCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDA 479 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~-Ti~eNi~~g~~~~ 479 (782)
+.+|+.++++||+||||||++.++........|. ...++++.|.|..... ++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4579999999999999999887664321111111 1246788888876543 7777775322110
Q ss_pred CHHHHHHHHHHhhhHhHHhcCCCCcccc----ccCCCC---CCCHHHHHHHHHHHHhccCCceEEEeCCCC-CCCHHHHH
Q 003976 480 SMDRVIEAAKAANAHSFVEGLPDGYQTQ----VGEGGT---QLSGGQKQRIAIARAVLRNPKILLLDEATS-ALDAESEL 551 (782)
Q Consensus 480 ~~~~i~~a~~~a~~~~~i~~lp~G~~t~----vge~G~---~LSgGQkQRiaiARAl~~~p~illLDE~ts-alD~~~e~ 551 (782)
- ...-|+... ....+. =-+.|+-.+.. +.-+++-+++|+||+-. ++|.....
T Consensus 137 ~------------------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 P------------------GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp T------------------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred c------------------CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHH
Confidence 0 000111111 110111 12457666653 44689999999999976 47766553
Q ss_pred HHHHHHHHHhCCCeEEE
Q 003976 552 IVQRALEKIMSNRTTIV 568 (782)
Q Consensus 552 ~i~~~l~~~~~~~T~i~ 568 (782)
...+.+.+...+.-+|+
T Consensus 197 ~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp HHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHhhCCCCeEEE
Confidence 34444444434433333
No 216
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.49 E-value=4.5e-05 Score=78.00 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=33.2
Q ss_pred ccccceEEee---CCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECC
Q 003976 393 VFENLNFSVD---AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 439 (782)
Q Consensus 393 vL~~isl~i~---~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 439 (782)
-|.+.|+.++ +|..++|.|++||||||++++|...+.+ .+.+....
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 3666666665 8999999999999999999999999988 66665543
No 217
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.44 E-value=6.3e-05 Score=84.50 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=43.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC------------CCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccc-cHHHHH
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY------------EPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNI 472 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~------------~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~-Ti~eNi 472 (782)
+++|||++|+|||||++.|.|.. +|.+|.+.++|.++.-++..-+|+..++.+|....|.. +..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 69999999999999999999985 37889999999987666655556666666666655543 344555
Q ss_pred hc
Q 003976 473 LL 474 (782)
Q Consensus 473 ~~ 474 (782)
..
T Consensus 262 ~~ 263 (439)
T 1mky_A 262 EK 263 (439)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 218
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.43 E-value=2e-05 Score=79.25 Aligned_cols=43 Identities=28% Similarity=0.328 Sum_probs=38.3
Q ss_pred EEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCcc--EEEECCee
Q 003976 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG--KILLDGHD 441 (782)
Q Consensus 399 l~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G--~I~i~g~d 441 (782)
+.+++|.+++|+|++||||||+++.|.+.+.|..| .+.+||.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45788999999999999999999999999998888 88888643
No 219
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.37 E-value=0.00019 Score=76.81 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=24.8
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEPT 431 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~~ 431 (782)
++..+.|.||+|+||||+++.+.+.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45689999999999999999999877543
No 220
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.36 E-value=2.6e-05 Score=84.67 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=45.5
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 443 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~ 443 (782)
+++++++++++|..++|+|++|+||||+++.|.+.+.+..|+|.+-+.|..
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 889999999999999999999999999999999999888888777665543
No 221
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.35 E-value=0.00015 Score=77.28 Aligned_cols=139 Identities=15% Similarity=0.174 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEE-CCeeCCCcCHHHHHhHceEEeccCCC--ccccHHHHHhcCCCCCC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL-DGHDLKSLQLKWLREQMGLVSQEPAL--FATSIANNILLGKEDAS 480 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i-~g~di~~~~~~~lR~~i~~V~Q~~~l--f~~Ti~eNi~~g~~~~~ 480 (782)
+.+++|||++|+|||||++.|.|.- +.+ .+.+-.. .++..+++.++..- |-+| |...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~tT-----r~~~~gi~~~~~~~i~~iDT---------pG~~ 67 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQTT-----RHRIVGIHTEGAYQAIYVDT---------PGLH 67 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSCC-----SSCEEEEEEETTEEEEEESS---------SSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCcc-----eeeEEEEEEECCeeEEEEEC---------cCCC
Confidence 3489999999999999999999863 211 1111111 12346777776531 2122 2221
Q ss_pred HHHHHHHHHHhhhHhHHhcCCC---Cccccc--cCCCCCCCHHHHHHHHHHHHhc--cCCceEEEeCCCCCCCHHH-HHH
Q 003976 481 MDRVIEAAKAANAHSFVEGLPD---GYQTQV--GEGGTQLSGGQKQRIAIARAVL--RNPKILLLDEATSALDAES-ELI 552 (782)
Q Consensus 481 ~~~i~~a~~~a~~~~~i~~lp~---G~~t~v--ge~G~~LSgGQkQRiaiARAl~--~~p~illLDE~tsalD~~~-e~~ 552 (782)
. +-...... ++...... ..|-.+ -+.. .+|+|++ .+++++. ..|.|+++ +-+|... +..
T Consensus 68 ~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~-~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 68 M-EEKRAINR----LMNKAASSSIGDVELVIFVVEGT-RWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp H-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETT-CCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred c-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCC-CCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 0 11111110 11111111 112211 1222 2899986 5566666 67888888 6788765 556
Q ss_pred HHHHHHHHhC--C--CeEEEEecCcch
Q 003976 553 VQRALEKIMS--N--RTTIVVAHRLST 575 (782)
Q Consensus 553 i~~~l~~~~~--~--~T~i~iaHrl~~ 575 (782)
+.+.+.++.+ + .++.+.||.-.-
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~~ 161 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGLN 161 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCCC
Confidence 6666666643 2 234444555433
No 222
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.35 E-value=1.6e-05 Score=81.64 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=39.4
Q ss_pred CCEEEEeCCCCCcHHHHHHHHH---cCCCCCccEE--------EECCeeCCCcC-HHHHHhHceEEe
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQ---RLYEPTSGKI--------LLDGHDLKSLQ-LKWLREQMGLVS 458 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~---~~~~~~~G~I--------~i~g~di~~~~-~~~lR~~i~~V~ 458 (782)
.-.++|+|||||||||+.+.|. |+...+.|.+ .-.|.++.+.. ...+.+++.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~ 75 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGV 75 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEE
Confidence 4589999999999999999998 4444555655 24566666543 556666676666
No 223
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.34 E-value=5.7e-05 Score=74.88 Aligned_cols=42 Identities=24% Similarity=0.491 Sum_probs=31.2
Q ss_pred EEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHc
Q 003976 383 CFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 383 ~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
+|+||+- ..+++++|++.+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~~-~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF-SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH-HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 4567653 24899999998887 589999999999999999986
No 224
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.33 E-value=0.00019 Score=76.96 Aligned_cols=107 Identities=9% Similarity=0.150 Sum_probs=65.0
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 472 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi 472 (782)
.|+++.--+++|+.+.|.|++|+||||++.-++.-.-. . | ..+.|++=
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~------g------------~~vl~~sl------------- 104 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-N------D------------DVVNLHSL------------- 104 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-T------T------------CEEEEEES-------------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c------C------------CeEEEEEC-------------
Confidence 57777656899999999999999999998877643211 0 1 01223221
Q ss_pred hcCCCCCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCC
Q 003976 473 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544 (782)
Q Consensus 473 ~~g~~~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsa 544 (782)
+.+.+++.+-+......-.+..+-.|. ..||++++||++.|...+.++++++.|+|...
T Consensus 105 -----E~s~~~l~~R~~~~~~~i~~~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 105 -----EMGKKENIKRLIVTAGSINAQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -----SSCHHHHHHHHHHHHTTCCHHHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -----CCCHHHHHHHHHHHHcCCCHHHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 134444433322111000000010110 13889999999999999989999999988644
No 225
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.33 E-value=0.00096 Score=72.71 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=32.3
Q ss_pred ccccceEE---eeCCCEEEEeCCCCCcHHHHHHHHHcCCCCC-ccEEEECC
Q 003976 393 VFENLNFS---VDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-SGKILLDG 439 (782)
Q Consensus 393 vL~~isl~---i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~-~G~I~i~g 439 (782)
.|+.+ |. +++|+.+.|.|++|||||||+.-+....... ...++++.
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45554 33 8899999999999999999998776544322 22344544
No 226
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.32 E-value=0.001 Score=77.28 Aligned_cols=110 Identities=13% Similarity=0.162 Sum_probs=83.4
Q ss_pred HHHHHHcccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCch----hhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 003976 670 WELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDS----QIKRVVDQVALIFVGLAVVTIPVYLLQH 745 (782)
Q Consensus 670 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 745 (782)
++++++.++.+++++++++++++.+++.++..++++.+++........ ........+++++++++++..++.+++.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (578)
T 4a82_A 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQ 82 (578)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666678888888888888888777777888888888765543211 1111113445566777778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccC
Q 003976 746 YFYTLMGEHLTARVRLSMFSGSFIFSFQFYILNA 779 (782)
Q Consensus 746 ~~~~~~~~~~~~~lr~~~f~~il~~~~~fFd~nr 779 (782)
++..+.+.++..++|.++|++++++|++||+.++
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~ 116 (578)
T 4a82_A 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYANNQ 116 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCC
Confidence 9999999999999999999999999999997653
No 227
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.32 E-value=0.00024 Score=70.33 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.7
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCCCCC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLYEPT 431 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~~~~ 431 (782)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999998876543
No 228
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.29 E-value=0.0001 Score=71.06 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=28.3
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 439 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 439 (782)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998764 55654
No 229
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.21 E-value=0.00016 Score=73.03 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=24.9
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
++..+.|+||+|+||||+++.+.+.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876643
No 230
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=0.00011 Score=79.32 Aligned_cols=43 Identities=19% Similarity=0.362 Sum_probs=33.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcch
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLST 575 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~ 575 (782)
++.|+++|| ...+++.....+.+.+++...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 678999999 6778888888888888776555556777777654
No 231
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.19 E-value=0.00021 Score=70.11 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=20.8
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHc
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
++++++++.++. +++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 789999998877 889999999999999999987
No 232
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.17 E-value=9e-05 Score=80.71 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=37.0
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS 444 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~ 444 (782)
+++..++|+|++|||||||++.|.|.+.|.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3577999999999999999999999999999999888876654
No 233
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.17 E-value=3e-05 Score=76.73 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=36.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC------CCCCccEEEECCe--eCCCcCH--------HHHHhHceEEeccCCCccccHH
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL------YEPTSGKILLDGH--DLKSLQL--------KWLREQMGLVSQEPALFATSIA 469 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~------~~~~~G~I~i~g~--di~~~~~--------~~lR~~i~~V~Q~~~lf~~Ti~ 469 (782)
.++|+|++||||||++++|... .+|..|...++.. +-...+. ..+++....+.|+.++++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 6899999999999999999983 3444333221110 0000110 0123333455666677777777
Q ss_pred HHHhc
Q 003976 470 NNILL 474 (782)
Q Consensus 470 eNi~~ 474 (782)
+|+.+
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 77665
No 234
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.16 E-value=0.00086 Score=70.05 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=24.9
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++++.-+.|.||+|+||||+++.+.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4667789999999999999999998865
No 235
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.16 E-value=0.0016 Score=75.82 Aligned_cols=109 Identities=14% Similarity=0.168 Sum_probs=79.1
Q ss_pred HHHHHHcccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 670 WELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYT 749 (782)
Q Consensus 670 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 749 (782)
++++++.++.++.++++++++++.+++.++..++++.+++................+.++++++.++..++.+++.++..
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (595)
T 2yl4_A 8 RKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQ 87 (595)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556667677777777777777777777777777765432111111112334455677777888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccc
Q 003976 750 LMGEHLTARVRLSMFSGSFIFSFQFYILN 778 (782)
Q Consensus 750 ~~~~~~~~~lr~~~f~~il~~~~~fFd~n 778 (782)
..+.++..++|.++|++++++|++||+.+
T Consensus 88 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~ 116 (595)
T 2yl4_A 88 TSGQRIVNRLRTSLFSSILRQEVAFFDKT 116 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCC
Confidence 99999999999999999999999999754
No 236
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.15 E-value=0.0016 Score=75.80 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=82.7
Q ss_pred HHHHcccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003976 672 LLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLM 751 (782)
Q Consensus 672 ~~~~~~~~~~~~~~g~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 751 (782)
++++.++.|++++++++++++.+++.++..++++.+++....... ......+.+++++++++..++.+++.++..+.
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (587)
T 3qf4_A 14 LARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD---FSLVLKTGILMLIVALIGAVGGIGCTVFASYA 90 (587)
T ss_dssp GGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888888888888888888888888876543211 12334566777788888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccc
Q 003976 752 GEHLTARVRLSMFSGSFIFSFQFYILN 778 (782)
Q Consensus 752 ~~~~~~~lr~~~f~~il~~~~~fFd~n 778 (782)
++++..++|.++|+++++.|++||+.+
T Consensus 91 ~~~~~~~lr~~l~~~ll~~~~~~~~~~ 117 (587)
T 3qf4_A 91 SQNFGADLRRDLFRKVLSFSISNVNRF 117 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHccC
Confidence 999999999999999999999999653
No 237
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.09 E-value=0.00047 Score=73.25 Aligned_cols=39 Identities=26% Similarity=0.521 Sum_probs=31.3
Q ss_pred EEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECC
Q 003976 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 439 (782)
Q Consensus 399 l~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 439 (782)
+.++++..+.|.||+|+||||+++.+.+... .+-+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 4568899999999999999999999998764 34444443
No 238
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.08 E-value=0.00048 Score=72.84 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=26.6
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCCCCCccE
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~~~~~G~ 434 (782)
..+.|+||+|+||||+++.|.+...+..|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 579999999999999999999998776664
No 239
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.05 E-value=0.00035 Score=67.46 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=23.5
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++|.+++|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 240
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.02 E-value=0.00093 Score=66.77 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=31.9
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV 576 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i 576 (782)
.+|.++++||+-. +|......+.+.+++...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999866 67777777777776543455677778776543
No 241
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.93 E-value=0.00069 Score=76.37 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhccCCceEEEeC-CCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 003976 518 GQKQRIAIARAVLRNPKILLLDE-ATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV 576 (782)
Q Consensus 518 GQkQRiaiARAl~~~p~illLDE-~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i 576 (782)
.|++-...++..+++++++|+.. ++..+.... ..+.+.+++ .++.+|+|.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 48888889999999999888763 444455544 345555543 578999999888754
No 242
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.90 E-value=0.00041 Score=67.99 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=26.8
Q ss_pred cceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC
Q 003976 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 396 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999876
No 243
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.89 E-value=0.0011 Score=70.92 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.5
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHc
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
-+++|+.+.|.||+||||||++.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999999987764
No 244
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.88 E-value=0.00015 Score=77.12 Aligned_cols=50 Identities=24% Similarity=0.239 Sum_probs=43.9
Q ss_pred cc-ceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCc
Q 003976 395 EN-LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL 445 (782)
Q Consensus 395 ~~-isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~ 445 (782)
++ ++++.+ |++++++|++|+||||++..|.+.+.+..|+|.+.+.|...-
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 45 777776 999999999999999999999999999999999988887643
No 245
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.86 E-value=0.0018 Score=70.26 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=31.7
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCee
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD 441 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~d 441 (782)
.+|..+.|.||+|+||||+++.+.+........+.+++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4577899999999999999999998886544555565543
No 246
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.82 E-value=0.00031 Score=72.67 Aligned_cols=43 Identities=28% Similarity=0.507 Sum_probs=35.4
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS 444 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~ 444 (782)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||..++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 456778999999999999999999998875 3568888866543
No 247
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.82 E-value=0.00062 Score=64.66 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=26.2
Q ss_pred ccceEEeeCCCEEEEeCCCCCcHHHHHHHHH-cCCC
Q 003976 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ-RLYE 429 (782)
Q Consensus 395 ~~isl~i~~G~~vaivG~sGsGKSTl~~ll~-~~~~ 429 (782)
++.++++.+| ..+|+||+||||||++.+|. .+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3445566555 89999999999999999986 4443
No 248
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.80 E-value=0.0065 Score=70.57 Aligned_cols=107 Identities=13% Similarity=0.173 Sum_probs=79.7
Q ss_pred HHHHHHHcccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhhhhhHhHH-HHHHHHHHHHHHHHHHHHHHH
Q 003976 669 IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQV-ALIFVGLAVVTIPVYLLQHYF 747 (782)
Q Consensus 669 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~ 747 (782)
+++++++.++.++.++++++++++.+++.++..++++.+++...... . .....| .+.+++++++..++.+++.+.
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b60_A 13 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT--D--RSVLLWMPLVVIGLMILRGITSYISSYC 88 (582)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST--T--HHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--c--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666777777777888887777777777788777543211 1 112223 334677788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccC
Q 003976 748 YTLMGEHLTARVRLSMFSGSFIFSFQFYILNA 779 (782)
Q Consensus 748 ~~~~~~~~~~~lr~~~f~~il~~~~~fFd~nr 779 (782)
...+++++..++|.++|++++++|++||+.++
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~ 120 (582)
T 3b60_A 89 ISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQS 120 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCC
Confidence 99999999999999999999999999997543
No 249
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.76 E-value=0.00013 Score=79.82 Aligned_cols=59 Identities=24% Similarity=0.232 Sum_probs=36.2
Q ss_pred CcCcEEEEeEEEEcCCCCCcccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECC
Q 003976 373 LAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 439 (782)
Q Consensus 373 ~~g~i~~~~v~f~y~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 439 (782)
..|.|.++|++..|.. ..++++++|+| +|||++|+|||||++.|.+...+..|.+..++
T Consensus 14 ~~~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -------CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CCceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 3567999999888853 23889999976 99999999999999999887665555544333
No 250
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.72 E-value=0.0036 Score=58.73 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=25.3
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEPT 431 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~~ 431 (782)
+.+.-+.|.||+|+|||++++.|.......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 456679999999999999999998876543
No 251
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.71 E-value=0.0004 Score=67.92 Aligned_cols=40 Identities=30% Similarity=0.537 Sum_probs=33.4
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEE-EECC
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI-LLDG 439 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I-~i~g 439 (782)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345799999999999999999999999988776765 4554
No 252
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.69 E-value=2.8e-05 Score=85.21 Aligned_cols=85 Identities=13% Similarity=0.046 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhc-cCCceEEEeC---CC------CCCCHHHHHHHHHHHHHHhC--CCeEEEEecCcchhhhcCE
Q 003976 514 QLSGGQKQRIAIARAVL-RNPKILLLDE---AT------SALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDT 581 (782)
Q Consensus 514 ~LSgGQkQRiaiARAl~-~~p~illLDE---~t------salD~~~e~~i~~~l~~~~~--~~T~i~iaHrl~~i~~aD~ 581 (782)
.+|+|++||..+++++. .+|++++||| |+ +++|+..+..+.++|.++.+ +.|+|+++|--..-+-+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 56788889999998875 5999999999 65 68999999999999987754 8899999986333344565
Q ss_pred EEEEeCCEEEEecChhHHh
Q 003976 582 IMVLKNGQVVESGTHVDLI 600 (782)
Q Consensus 582 I~vl~~G~ive~G~~~eL~ 600 (782)
+.++++ +++.|+.+||.
T Consensus 338 i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp HHHHHH--HTSCCCCSSCC
T ss_pred HHHHHH--HhcccchhHhh
Confidence 555543 34444555543
No 253
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.68 E-value=0.002 Score=72.29 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=64.0
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHH
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 472 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi 472 (782)
.|+.+.--+++|+.+.|.|++|+||||++.-++.-.....| . .+.|++=|
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------~------------~vl~~slE------------ 238 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------V------------GVGIYSLE------------ 238 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------C------------CEEEEESS------------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------C------------eEEEEECC------------
Confidence 46666545899999999999999999999877765432211 1 12222221
Q ss_pred hcCCCCCCHHHHHHHHHHhhhHhHHhcCC-CCccccccCCCCCCCHHHHHHHHHHHHhccCCceEEEeCCCCC
Q 003976 473 LLGKEDASMDRVIEAAKAANAHSFVEGLP-DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544 (782)
Q Consensus 473 ~~g~~~~~~~~i~~a~~~a~~~~~i~~lp-~G~~t~vge~G~~LSgGQkQRiaiARAl~~~p~illLDE~tsa 544 (782)
.+.+++..-+.... ..++ +.+. . ..|+..+.+|+.-|-..+.+.++++.|+|...
T Consensus 239 ------~~~~~l~~R~~~~~-----~~i~~~~l~-----~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s 294 (444)
T 2q6t_A 239 ------MPAAQLTLRMMCSE-----ARIDMNRVR-----L-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT 294 (444)
T ss_dssp ------SCHHHHHHHHHHHH-----TTCCTTTCC-----G-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB
T ss_pred ------CCHHHHHHHHHHHH-----cCCCHHHHh-----C-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 23444433221110 0111 1111 1 26899999999888888888889988876433
No 254
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.67 E-value=0.00047 Score=68.35 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=28.4
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL 442 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di 442 (782)
...++|+|++||||||+++.|.+.+ |...+|+.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999998876 4556665443
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.65 E-value=0.0008 Score=66.50 Aligned_cols=74 Identities=22% Similarity=0.449 Sum_probs=48.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC-------------CCCccEEEECCeeCCCcCHHHHHhHceEEeccCCCccccHHHHH
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY-------------EPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 472 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~-------------~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~lf~~Ti~eNi 472 (782)
.+.|+||||||||||++.|...+ +|..|++ ||+|..-++.+...+.+. ++-+|-.+.+..|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i~---~g~flE~~~~~g~- 76 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGN- 76 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHHH---TTCEEEEEEETTE-
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHHH---cCCEEEEEEEcCc-
Confidence 37899999999999999987543 3456764 898888788777776643 4444444444333
Q ss_pred hcCCCCCCHHHHHHHH
Q 003976 473 LLGKEDASMDRVIEAA 488 (782)
Q Consensus 473 ~~g~~~~~~~~i~~a~ 488 (782)
.||- +.+.+.+++
T Consensus 77 ~YGt---~~~~v~~~l 89 (186)
T 1ex7_A 77 YYGS---TVASVKQVS 89 (186)
T ss_dssp EEEE---EHHHHHHHH
T ss_pred eeee---ecceeeehh
Confidence 3443 244455544
No 256
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.65 E-value=0.0012 Score=62.85 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++|+|++|+|||||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 257
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.60 E-value=0.00079 Score=65.78 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=30.5
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCCCC---ccEEEECCee
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHD 441 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~d 441 (782)
-..++|+|+|||||||+++.|.+.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999876543 3777877755
No 258
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.59 E-value=0.001 Score=73.34 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=34.8
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcC-----------CCCCccEEEECCe
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRL-----------YEPTSGKILLDGH 440 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~-----------~~~~~G~I~i~g~ 440 (782)
.+..|..++|||++|+|||||++.|.+. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 7889999988774
No 259
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.57 E-value=0.009 Score=61.14 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.4
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+..-+.|.||+|+||||+++.+.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999998765
No 260
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.57 E-value=0.0068 Score=65.88 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=24.0
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++...+.|.||+|+||||+++.+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998765
No 261
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.54 E-value=0.0012 Score=63.82 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+++++|++|+|||||++.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 262
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.41 E-value=0.0081 Score=61.73 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhc---cCCceEEEeCCCCCCCHHHHHHHHHHHHHHh----CCCeEEEEecCcch
Q 003976 516 SGGQKQRIAIARAVL---RNPKILLLDEATSALDAESELIVQRALEKIM----SNRTTIVVAHRLST 575 (782)
Q Consensus 516 SgGQkQRiaiARAl~---~~p~illLDE~tsalD~~~e~~i~~~l~~~~----~~~T~i~iaHrl~~ 575 (782)
+.|++.+-.+.|+++ ++|+++|+--..+.++.. +..+.+.+.+.. .++++|+++|..+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 344666667777774 889888765333445544 444445555442 26789999997653
No 263
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.36 E-value=0.0031 Score=68.34 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.8
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999988763
No 264
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.36 E-value=0.0054 Score=64.78 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+...+.+.||+|+|||++++.|.+.+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568888999999999999999876
No 265
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.35 E-value=0.0097 Score=66.43 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=27.9
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEE
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 437 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i 437 (782)
++..++++|++|+||||++.-|...+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35789999999999999999999888654434433
No 266
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.30 E-value=0.0016 Score=71.39 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=45.7
Q ss_pred HHHHHHHhccCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcchhhhcCEEEEE
Q 003976 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 585 (782)
Q Consensus 522 RiaiARAl~~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i~~aD~I~vl 585 (782)
+.+|++||..+|+++++|||| |+++ +..+++....|.+++.++|..+....+||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~---~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLET---VETALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHH---HHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHH---HHHHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 469999999999999999999 7665 344555555689999999998766667776544
No 267
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.27 E-value=0.022 Score=60.95 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.1
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++..-+.|.||+|+||||+++.+.+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456789999999999999999999876
No 268
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.26 E-value=0.0019 Score=62.65 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEPT 431 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~~ 431 (782)
+++|||++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999875443
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.25 E-value=0.0021 Score=61.94 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.0
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
.|..+.|+|+|||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 270
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.23 E-value=0.016 Score=63.17 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=24.3
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcC
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
-+++|+.+.|.||+|||||||+.-+...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3789999999999999999998766543
No 271
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.22 E-value=0.0038 Score=60.74 Aligned_cols=35 Identities=31% Similarity=0.551 Sum_probs=27.2
Q ss_pred EEEEeCCCCCcHHHHHHHH-HcC----CCCCcc----EEEECCe
Q 003976 406 TFAFVGPSGSGKSTIISMV-QRL----YEPTSG----KILLDGH 440 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll-~~~----~~~~~G----~I~i~g~ 440 (782)
+++|+|++|+|||||++.+ .+. |.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 6999999999999999655 444 677766 5666664
No 272
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.18 E-value=0.0022 Score=63.42 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 273
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.17 E-value=0.019 Score=56.34 Aligned_cols=42 Identities=29% Similarity=0.383 Sum_probs=28.0
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 003976 531 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573 (782)
Q Consensus 531 ~~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl 573 (782)
.++.++++||+- .+++.....+.+.+++...+..+|+++++.
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 368899999974 466676667777776644444555556554
No 274
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.16 E-value=0.0079 Score=64.25 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=25.1
Q ss_pred EEeeCCCEEEEeCCCCCcHHHHHHHHHc
Q 003976 399 FSVDAGKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 399 l~i~~G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
--+++|..+.|.||+|||||||+..+..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999999999998874
No 275
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.16 E-value=0.025 Score=59.51 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.4
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++..+.|.||+|+||||+++.+...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35579999999999999999888765
No 276
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.15 E-value=0.0008 Score=66.99 Aligned_cols=88 Identities=19% Similarity=0.263 Sum_probs=50.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHceEEeccCC----CccccHHHHHh--cCC-C-
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPA----LFATSIANNIL--LGK-E- 477 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i~~V~Q~~~----lf~~Ti~eNi~--~g~-~- 477 (782)
+++|+|++||||||+++.|.+.+.+....+. ++. +|. ++..++++.+. ++. +
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-------------------~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~ 61 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-------------------TLA-FPRYGQSVAADIAAEALHGEHGDLAS 61 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-------------------EEE-SSEEEEEEEEEEHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-------------------EEe-ecCCCCcchhhHHHHHHcccccccCC
Confidence 6899999999999999999998875433332 111 121 12345665542 110 1
Q ss_pred CCCHHHHHHHHHHhhhHhHHhcCCCCccccccCCCC
Q 003976 478 DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513 (782)
Q Consensus 478 ~~~~~~i~~a~~~a~~~~~i~~lp~G~~t~vge~G~ 513 (782)
+...+.+..++..+...+.+..++.+.++.|.++..
T Consensus 62 ~~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~~~ 97 (214)
T 1gtv_A 62 SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYV 97 (214)
T ss_dssp EHHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEEEE
T ss_pred CHhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECCCc
Confidence 111223333344434356676666666788887764
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.09 E-value=0.0023 Score=62.17 Aligned_cols=27 Identities=37% Similarity=0.676 Sum_probs=23.6
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 278
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.08 E-value=0.0031 Score=63.00 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=23.8
Q ss_pred cceEEeeCCCEEEEeCCCCCcHHHHHHHHH
Q 003976 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQ 425 (782)
Q Consensus 396 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~ 425 (782)
+.++++.+| .++|+||+||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445555554 99999999999999999885
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.07 E-value=0.0023 Score=61.05 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
.++|+|++||||||+.+.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
No 280
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.06 E-value=0.0042 Score=61.05 Aligned_cols=26 Identities=38% Similarity=0.486 Sum_probs=21.6
Q ss_pred CCCEEEEeCCCCCcHHHHH-HHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTII-SMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~-~ll~~~~ 428 (782)
+|..+.++||.||||||++ +++.+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4889999999999999997 6665543
No 281
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.06 E-value=0.0013 Score=71.21 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=33.5
Q ss_pred ccccceEEeeCCCE--EEEeCCCCCcHHHHHHHHHcCC
Q 003976 393 VFENLNFSVDAGKT--FAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 393 vL~~isl~i~~G~~--vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++++++.+++|+. ++|+|++||||||+.++|.+.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 78899999999999 9999999999999999998765
No 282
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.93 E-value=0.0036 Score=66.01 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=28.9
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 439 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 439 (782)
.|..+.|+|||||||||+.+.|...++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987664 35677776
No 283
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.91 E-value=0.0042 Score=61.19 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=24.5
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+|..++|+|++||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999877
No 284
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.90 E-value=0.004 Score=60.43 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.3
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
+|..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987553
No 285
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.90 E-value=0.0036 Score=64.73 Aligned_cols=33 Identities=30% Similarity=0.559 Sum_probs=25.6
Q ss_pred cccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 394 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+.++....++| +.|.||+|+||||+++.+.+..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 34444555555 8899999999999999998744
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.86 E-value=0.004 Score=60.40 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.8
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.+..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998665
No 287
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.86 E-value=0.0038 Score=68.68 Aligned_cols=58 Identities=21% Similarity=0.360 Sum_probs=43.8
Q ss_pred cCCceEEEeCCCCCCC---HHHHHHHHHHHHHHhC-CCeEEEEecCcchh-------------hhcCEEEEEeCC
Q 003976 531 RNPKILLLDEATSALD---AESELIVQRALEKIMS-NRTTIVVAHRLSTV-------------RDVDTIMVLKNG 588 (782)
Q Consensus 531 ~~p~illLDE~tsalD---~~~e~~i~~~l~~~~~-~~T~i~iaHrl~~i-------------~~aD~I~vl~~G 588 (782)
..|.++++||+=.-++ +.....+.+.+++.++ |-.++++||+++.+ .+|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3578999999988885 5577778888887765 77899999998765 346666666543
No 288
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.86 E-value=0.0072 Score=60.38 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=25.0
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+|+...+.+.||.|+||||++..|.+++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6676789999999999999999998875
No 289
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.78 E-value=0.014 Score=54.60 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=23.6
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
+.+.-+.|.||+|+|||++++.|.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4566799999999999999999877653
No 290
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.76 E-value=0.0045 Score=58.81 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=18.3
Q ss_pred EEEEeCCCCCcHHHHHHHH
Q 003976 406 TFAFVGPSGSGKSTIISMV 424 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll 424 (782)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 291
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.74 E-value=0.0031 Score=67.25 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=29.8
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHc
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
.+++..+.+ .|..++|+|+||+||||++..|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 678888888 799999999999999999998886
No 292
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.74 E-value=0.0039 Score=60.74 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=24.0
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++|..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998755
No 293
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.74 E-value=0.0041 Score=60.19 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=21.0
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
-+++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 294
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.68 E-value=0.0074 Score=65.72 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=31.4
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHc-----------CCCCCccEEEECC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQR-----------LYEPTSGKILLDG 439 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~-----------~~~~~~G~I~i~g 439 (782)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 46799999999999999999998 4578889888876
No 295
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.66 E-value=0.028 Score=62.44 Aligned_cols=30 Identities=27% Similarity=0.196 Sum_probs=25.2
Q ss_pred EEeeCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 399 l~i~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+.-++...+.|+|++||||||+.+.|..-+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 334567899999999999999999998654
No 296
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.65 E-value=0.0039 Score=60.34 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=23.8
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998654
No 297
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.64 E-value=0.0055 Score=62.31 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.3
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
-++|..++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3568899999999999999999998754
No 298
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.59 E-value=0.026 Score=60.85 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=29.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcch
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLST 575 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~ 575 (782)
++.++++||+- .++......+.+.+++...+..+|++|++...
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 57899999974 46777777777777654344556667776654
No 299
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.57 E-value=0.0073 Score=61.31 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=33.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCc-----------chhhhcCEEEEEe
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL-----------STVRDVDTIMVLK 586 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl-----------~~i~~aD~I~vl~ 586 (782)
+|+++++||+-- ++.+.-..+ ..|.+ .+.++|++.|+. ..+.-||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665422222 22333 488999999942 2245689998875
No 300
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.57 E-value=0.0069 Score=61.45 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=27.0
Q ss_pred hccCCceEEEeCCCCC-CCH-HHHHHHHHHHHHHhCCCeEEEEec
Q 003976 529 VLRNPKILLLDEATSA-LDA-ESELIVQRALEKIMSNRTTIVVAH 571 (782)
Q Consensus 529 l~~~p~illLDE~tsa-lD~-~~e~~i~~~l~~~~~~~T~i~iaH 571 (782)
+.++|+++|+||+-.. .+. .++..++........+.-++..+|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3468999999997642 332 244444444444456767777777
No 301
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.56 E-value=0.03 Score=71.80 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=31.0
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEE-EECC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI-LLDG 439 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I-~i~g 439 (782)
+++|+.+.|.||+|+|||||+..+........|.+ .+++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 89999999999999999999998877665444433 3444
No 302
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.56 E-value=0.0045 Score=60.48 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.2
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998755
No 303
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.54 E-value=0.027 Score=61.07 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.7
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++..-+.|.||+|+||||+++.+....
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455679999999999999999999875
No 304
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.53 E-value=0.0052 Score=60.69 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=25.0
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
+|..++|.|++||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999987764
No 305
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.51 E-value=0.0063 Score=60.26 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=24.3
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++|..++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998654
No 306
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.48 E-value=0.0049 Score=59.82 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=27.3
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCCCCCc---cEEEECCe
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLYEPTS---GKILLDGH 440 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~~~~~---G~I~i~g~ 440 (782)
..++|+|+|||||||++..|.+.+.+.. |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4799999999999999999998765432 45555543
No 307
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.47 E-value=0.0023 Score=62.73 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=25.4
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
..+++..++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999998766
No 308
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.46 E-value=0.0065 Score=60.80 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=25.5
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 439 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 439 (782)
.+..++|+|++||||||+++.|.. + |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c----CCEEEEc
Confidence 356899999999999999999987 3 4445544
No 309
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.46 E-value=0.028 Score=59.69 Aligned_cols=44 Identities=25% Similarity=0.371 Sum_probs=31.6
Q ss_pred CCceEEEeCCCCCCC-HHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 003976 532 NPKILLLDEATSALD-AESELIVQRALEKIMSNRTTIVVAHRLSTV 576 (782)
Q Consensus 532 ~p~illLDE~tsalD-~~~e~~i~~~l~~~~~~~T~i~iaHrl~~i 576 (782)
+++++++||+-. +. .+....+.+.+++...+..+|++|++...+
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGS
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 789999999843 33 555666667776655567788888887644
No 310
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.42 E-value=0.007 Score=60.01 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.5
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++|..++|+|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998654
No 311
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.039 Score=61.55 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=25.7
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
+++-.-+.+.||+|||||++++++++...
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 66777899999999999999999998764
No 312
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.32 E-value=0.0079 Score=57.70 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=20.4
Q ss_pred CEEEEeCCCCCcHHHHHHHHHc
Q 003976 405 KTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~ 426 (782)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 313
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.31 E-value=0.005 Score=66.87 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.+..+.|.||+|+||||+++.+.+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998765
No 314
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.30 E-value=0.0075 Score=58.08 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998765
No 315
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.23 E-value=0.038 Score=58.82 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=25.8
Q ss_pred eeCCCEEEEeCCCCCcHHHHHH-HHHcCCCC--CccEEEECC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIIS-MVQRLYEP--TSGKILLDG 439 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~-ll~~~~~~--~~G~I~i~g 439 (782)
+++| .+-|.||+|||||||+- ++...... ..-.+++|+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 7889 99999999999999944 44333321 222455555
No 316
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.23 E-value=0.0064 Score=58.69 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=19.1
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
+++..+.|+|++||||||+.+.|...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4578999999999999999999986553
No 317
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.21 E-value=0.048 Score=57.56 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=22.7
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++..+.|.||+|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 44679999999999999999998754
No 318
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.20 E-value=0.049 Score=58.00 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.3
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.+..-+.|.||+|+|||++++.+....
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 355679999999999999999998764
No 319
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.15 E-value=0.01 Score=66.55 Aligned_cols=34 Identities=6% Similarity=0.168 Sum_probs=27.1
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHc
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
-|+.+.--+++|+.+.|.|++|+||||++.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3444443489999999999999999999876664
No 320
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.13 E-value=0.0098 Score=57.76 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997654
No 321
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.11 E-value=0.022 Score=54.14 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=22.4
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
++.-.++++|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999863
No 322
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.11 E-value=0.0087 Score=61.78 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
.++|+||+||||||+.+.|.+.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999987653
No 323
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.10 E-value=0.0095 Score=58.50 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
++++||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999754
No 324
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.09 E-value=0.017 Score=54.97 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 325
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.03 E-value=0.056 Score=61.28 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=24.6
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++...+.|.||+|+|||++++.+....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5667789999999999999999998765
No 326
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.03 E-value=0.01 Score=57.58 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
.+.|.|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988664
No 327
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.00 E-value=0.01 Score=59.45 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=23.7
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++|..+.|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999998765
No 328
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.02 Score=53.82 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 329
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.98 E-value=0.063 Score=60.05 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.4
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.+..-+.|.||+|+||||+++.+.+..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 466789999999999999999999876
No 330
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.054 Score=60.21 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=25.1
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
+++..-+.+.||+|||||++++++++...
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56666799999999999999999998653
No 331
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.90 E-value=0.076 Score=58.12 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=23.8
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++..+.|.||+|+|||++++.+....
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998764
No 332
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.87 E-value=0.012 Score=64.33 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++|||++|+|||||+++|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
No 333
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.85 E-value=0.013 Score=57.10 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998766
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.84 E-value=0.015 Score=57.28 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=23.0
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.+..++|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 335
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.84 E-value=0.028 Score=59.18 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=28.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcch
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLST 575 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~~ 575 (782)
++.++++||+-. ++......+.+.+++...+..+|++|++.+.
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~~ 149 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNK 149 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChhh
Confidence 488999999743 4555556666677664445566777776543
No 336
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.82 E-value=0.012 Score=59.31 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=22.9
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++..+.|+|++||||||+.+.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998655
No 337
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.81 E-value=0.011 Score=58.14 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
...++|+|++||||||+.+.|...+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998665
No 338
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.77 E-value=0.011 Score=58.76 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++|.|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997655
No 339
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.75 E-value=0.013 Score=56.72 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=21.8
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+..++|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999998755
No 340
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.74 E-value=0.016 Score=55.27 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
-+.++|.|++||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997654
No 341
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.73 E-value=0.01 Score=59.54 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.6
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
.+..+.|+|++||||||+.+.|...+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987664
No 342
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.022 Score=56.21 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
+++|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999998764
No 343
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.72 E-value=0.013 Score=58.36 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997655
No 344
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.71 E-value=0.015 Score=55.57 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.4
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 345
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.67 E-value=0.012 Score=57.83 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998765
No 346
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.07 Score=59.38 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=26.0
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
-+++..-+.+.||+|||||++++++++...
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 366777899999999999999999998654
No 347
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.63 E-value=0.016 Score=54.34 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 348
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.62 E-value=0.023 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998654
No 349
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.61 E-value=0.093 Score=55.87 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=22.2
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
..+.|.||+|+||||+++.+.....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987754
No 350
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.61 E-value=0.016 Score=59.89 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=21.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++++|++|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.57 E-value=0.018 Score=54.72 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 352
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.54 E-value=0.033 Score=53.51 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=21.7
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+.=.++++|++|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4457999999999999999999863
No 353
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.54 E-value=0.017 Score=55.95 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 354
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.52 E-value=0.018 Score=53.75 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 355
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.50 E-value=0.019 Score=54.30 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998643
No 356
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.018 Score=55.75 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=21.7
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
-.++++|++|+|||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998764
No 357
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.086 Score=57.99 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=24.7
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
+++..-+.+.||+|||||++++++++...
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 45556699999999999999999998754
No 358
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.47 E-value=0.018 Score=56.86 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.4
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
..++|+|++||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999998753
No 359
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.44 E-value=0.024 Score=54.80 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.|.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999875
No 360
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.42 E-value=0.027 Score=52.78 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 361
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.42 E-value=0.026 Score=54.67 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999873
No 362
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.42 E-value=0.053 Score=64.87 Aligned_cols=23 Identities=30% Similarity=0.715 Sum_probs=21.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.+.++||+|+|||++++.|...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 363
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.41 E-value=0.017 Score=55.96 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.1
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998655
No 364
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.40 E-value=0.02 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998654
No 365
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.40 E-value=0.016 Score=54.41 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999997644
No 366
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.40 E-value=0.02 Score=53.82 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999997643
No 367
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.39 E-value=0.02 Score=53.52 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 368
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.38 E-value=0.017 Score=60.00 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998743
No 369
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.36 E-value=0.018 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 370
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.36 E-value=0.03 Score=54.87 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999753
No 371
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.34 E-value=0.011 Score=62.27 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=19.8
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++-+++|.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998755
No 372
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.33 E-value=0.018 Score=59.05 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.8
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
-.++|.|++||||||+.+.|...+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3699999999999999999987543
No 373
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.31 E-value=0.021 Score=53.69 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 374
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.31 E-value=0.019 Score=62.67 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=26.1
Q ss_pred cccceEEeeCCCEEEEeCCCCCcHHHHHHHHH
Q 003976 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ 425 (782)
Q Consensus 394 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~ 425 (782)
+++..+++.+ ..++|+||+|||||||+.+|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4566777766 489999999999999999886
No 375
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.30 E-value=0.021 Score=53.44 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 376
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.28 E-value=0.021 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998754
No 377
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.28 E-value=0.02 Score=58.51 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.1
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++-.++|.|++||||||+.+.|...|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998655
No 378
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.27 E-value=0.022 Score=54.19 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
No 379
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.24 E-value=0.022 Score=54.03 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999754
No 380
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.24 E-value=0.021 Score=58.95 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.0
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++..+.|+|++||||||+.+.|...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998753
No 381
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.23 E-value=0.02 Score=53.82 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 382
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.22 E-value=0.023 Score=54.80 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
+++++|++|+|||||++.+.+-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987654
No 383
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.14 E-value=0.028 Score=54.10 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 384
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.11 E-value=0.023 Score=65.87 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=24.6
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
.+..+.|.|+.|+||||+++.|...+..
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999887654
No 385
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.11 E-value=0.023 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 386
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.08 E-value=0.026 Score=60.63 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=24.1
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
++..+.|+||+|||||||...|..-++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 567899999999999999999998764
No 387
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.07 E-value=0.004 Score=75.12 Aligned_cols=45 Identities=27% Similarity=0.500 Sum_probs=36.1
Q ss_pred cceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeC
Q 003976 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL 442 (782)
Q Consensus 396 ~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di 442 (782)
..++.+++|+.+.++||+|||||||+++|.+.... +-+.+++.++
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i~v~~~~l 547 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISIKGPEL 547 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC--CCCCCCCSSS
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC--CEEEEechHh
Confidence 34677899999999999999999999999998853 4455555443
No 388
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.06 E-value=0.021 Score=55.24 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
--.++++|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999864
No 389
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.03 E-value=0.17 Score=65.82 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=30.7
Q ss_pred ccccce--EEeeCCCEEEEeCCCCCcHHHHHHHHHcC
Q 003976 393 VFENLN--FSVDAGKTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 393 vL~~is--l~i~~G~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.|+++. .-+++|+.+.++||+|||||||+..+.-.
T Consensus 1068 ~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~e 1104 (2050)
T 3cmu_A 1068 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 1104 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 678876 57999999999999999999999988743
No 390
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.00 E-value=0.021 Score=59.50 Aligned_cols=22 Identities=45% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+++|||++|+|||||++.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998754
No 391
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.98 E-value=0.026 Score=58.91 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++++|++|||||||++.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 392
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.97 E-value=0.027 Score=59.38 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=27.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 003976 532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 574 (782)
Q Consensus 532 ~p~illLDE~tsalD~~~e~~i~~~l~~~~~~~T~i~iaHrl~ 574 (782)
++.++++||+- .+++.....+.+.+++...+..+|+++.+.+
T Consensus 110 ~~~vliiDe~~-~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 110 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCeEEEEeCCC-cCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 68899999974 4566666677777766444445555666554
No 393
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.97 E-value=0.023 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++++|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999998654
No 394
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.97 E-value=0.027 Score=53.97 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 395
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.96 E-value=0.026 Score=54.15 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 396
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.92 E-value=0.03 Score=53.13 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 397
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.15 Score=56.36 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=25.5
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
+++..-+.+.||+|||||++++++++...
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 56667799999999999999999998764
No 398
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.90 E-value=0.26 Score=64.20 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=29.8
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCCCCCc-cEEEECC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS-GKILLDG 439 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~~~~~-G~I~i~g 439 (782)
+++|+.+.|.||+|+|||||+.-++....... ..+++++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~ 419 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 89999999999999999999887765554332 2344554
No 399
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.89 E-value=0.028 Score=52.51 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999974
No 400
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.89 E-value=0.025 Score=59.34 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHc
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
...++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
No 401
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.85 E-value=0.029 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.0
Q ss_pred CEEEEeCCCCCcHHHHHHHHHc
Q 003976 405 KTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~ 426 (782)
-.++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999965
No 402
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.81 E-value=0.027 Score=56.31 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=23.2
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+|..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998766
No 403
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.80 E-value=0.026 Score=54.25 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999864
No 404
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.79 E-value=0.03 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999764
No 405
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.76 E-value=0.042 Score=54.58 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=28.6
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.+++.-+.+ .|..+.|+||||||||||+..|..-.
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 566666665 58899999999999999999887654
No 406
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.75 E-value=0.027 Score=53.30 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++++|++|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999975
No 407
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.74 E-value=0.037 Score=53.60 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.2
Q ss_pred CEEEEeCCCCCcHHHHHHHHHc
Q 003976 405 KTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~ 426 (782)
-+++|+|++|+|||||++.+.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999986
No 408
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.73 E-value=0.046 Score=52.12 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=19.0
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 003976 406 TFAFVGPSGSGKSTIISMVQ 425 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~ 425 (782)
+++++|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 409
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.70 E-value=0.032 Score=53.06 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 410
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.68 E-value=0.28 Score=63.00 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.5
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++|+.+.|.||+|||||||+.-++...
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999987765443
No 411
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.68 E-value=0.032 Score=52.78 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 412
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.64 E-value=0.033 Score=53.73 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.|.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 413
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.63 E-value=0.029 Score=55.82 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.5
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998866
No 414
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.62 E-value=0.059 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++|||++|+|||||++.+.+..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999998643
No 415
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.60 E-value=0.034 Score=53.08 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 699999999999999999985
No 416
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.58 E-value=0.033 Score=59.02 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+++|||++|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999864
No 417
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.048 Score=52.76 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++++|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 699999999999999999986
No 418
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.51 E-value=0.038 Score=55.69 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=26.4
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46999999999999999999999988765
No 419
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.48 E-value=0.034 Score=56.53 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=22.3
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
.+|.++.|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987664
No 420
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.44 E-value=0.037 Score=53.45 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999754
No 421
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.43 E-value=0.038 Score=55.58 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.+.|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998655
No 422
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.39 E-value=0.034 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998754
No 423
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.39 E-value=0.038 Score=52.80 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
+++++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999884
No 424
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.38 E-value=0.038 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
No 425
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.38 E-value=0.035 Score=57.00 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++|+|++|+|||||++.|.+-
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
No 426
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.38 E-value=0.038 Score=53.86 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 427
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.37 E-value=0.035 Score=55.31 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998755
No 428
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.37 E-value=0.034 Score=59.84 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.4
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
..++|+|||||||||+.+.|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999988764
No 429
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.36 E-value=0.054 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999865
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.34 E-value=0.041 Score=58.49 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.6
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
+..++|+||||||||||...|..-++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999987663
No 431
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.34 E-value=0.038 Score=58.67 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+|||+|++|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999864
No 432
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.34 E-value=0.062 Score=52.04 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 433
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.33 E-value=0.044 Score=52.28 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=23.8
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
..+..+.|+||+|+||||+++.+...+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4457799999999999999999987653
No 434
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.33 E-value=0.039 Score=54.64 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++++|++|+|||||++.|.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.31 E-value=0.045 Score=55.33 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=23.1
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.+..+.|+|++||||||+.+.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998766
No 436
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.30 E-value=0.041 Score=53.14 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++++|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 437
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.18 Score=56.35 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=26.0
Q ss_pred EeeCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 400 ~i~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
-+++-.-+.+.||+|||||++++++.+...
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 466777899999999999999999998654
No 438
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.23 E-value=0.037 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++|+|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999753
No 439
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.23 E-value=0.043 Score=53.54 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999754
No 440
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.22 E-value=0.042 Score=52.40 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=19.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998874
No 441
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.22 E-value=0.025 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.6
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHc
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
+.-.++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999998863
No 442
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.19 E-value=0.042 Score=53.61 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+++|||++|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 443
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.19 E-value=0.088 Score=59.75 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=27.7
Q ss_pred cccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 394 L~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
|+.+.--+++|+.+.|.|++|+||||++.-++.-.-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 444432489999999999999999999876664443
No 444
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.17 E-value=0.049 Score=51.81 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=20.8
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
-=+++++|++|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999998753
No 445
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.16 E-value=0.021 Score=56.36 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=23.5
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcC
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
...|+.|.-..--.++++|++|+|||||++.+.+-
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp -----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 34444443333347999999999999999999864
No 446
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.12 E-value=0.045 Score=54.96 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=25.3
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
.+|.++++.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999877754
No 447
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.11 E-value=0.042 Score=55.09 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.6
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
-+++++|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999763
No 448
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.11 E-value=0.055 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++|+|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 449
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.09 E-value=0.024 Score=56.36 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.8
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.-+++|+|++|+|||||++.|.+-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998753
No 450
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.06 E-value=0.041 Score=57.34 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++++|++|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 451
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.05 E-value=0.046 Score=52.90 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 452
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.04 E-value=0.023 Score=63.70 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=30.4
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
+++.+ ..+-+|++++|+|+||+|||||++.|.+-...
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 45444 66789999999999999999999999865543
No 453
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.02 E-value=0.043 Score=53.31 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++++|++|+|||||++.+.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999975
No 454
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.01 E-value=0.041 Score=53.80 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=20.7
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
=.++|+|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 37999999999999999999864
No 455
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.99 E-value=0.048 Score=56.35 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++++|++|||||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999998743
No 456
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.95 E-value=0.032 Score=56.33 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=25.0
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
.++...+.|+||+||||+|..+.|..-|.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 45667899999999999999999987773
No 457
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.93 E-value=0.043 Score=53.10 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 458
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.90 E-value=0.049 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
=.++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999853
No 459
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.90 E-value=0.05 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999754
No 460
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.90 E-value=0.05 Score=55.57 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=25.1
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
+|.+++|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999877653
No 461
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.86 E-value=0.051 Score=52.54 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++|+|++|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 462
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.86 E-value=0.051 Score=52.81 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.4
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
-.++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999763
No 463
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.85 E-value=0.048 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.5
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHc
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
.=+++++|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999984
No 464
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.84 E-value=0.05 Score=53.00 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
+++++|++|+|||||++.+.+-+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 6999999999999999998875543
No 465
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.84 E-value=0.033 Score=57.45 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=24.7
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
+++.+++|.|+.||||||+++.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5778999999999999999999988773
No 466
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.83 E-value=0.046 Score=54.29 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.2
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
-.++|+|++|+|||||++.|.+..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999999988754
No 467
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.82 E-value=0.054 Score=54.43 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=25.0
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
+|.++.+.|++||||||++++|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999877653
No 468
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.82 E-value=0.052 Score=52.99 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.0
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.=.++|+|++|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 347999999999999999999754
No 469
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.81 E-value=0.048 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999753
No 470
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.80 E-value=0.051 Score=56.94 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=20.7
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
..+.|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999873
No 471
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.80 E-value=0.14 Score=58.12 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=22.3
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
...++|||++||||||+++.|...+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999996654
No 472
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.80 E-value=0.053 Score=54.92 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.9
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
++|..+++.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987664
No 473
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.78 E-value=0.049 Score=58.21 Aligned_cols=25 Identities=16% Similarity=0.406 Sum_probs=22.5
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
..+.|+||+||||||+.+.|..-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 474
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.76 E-value=0.053 Score=56.25 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=23.0
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCCCCCccE
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~~~~~G~ 434 (782)
.++++||.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876544443
No 475
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.71 E-value=0.044 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 476
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.68 E-value=0.048 Score=57.50 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++|||++|+|||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
No 477
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.67 E-value=0.059 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 478
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.67 E-value=0.047 Score=55.44 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=24.0
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
+|..++|.|+.||||||+++.|...+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998774
No 479
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.65 E-value=0.043 Score=52.14 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
+++++|++|+|||||++.+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 480
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.63 E-value=0.041 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++++|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999997653
No 481
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.60 E-value=0.059 Score=52.15 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
+++++|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999988864
No 482
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.59 E-value=0.061 Score=52.37 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.0
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~ 427 (782)
=.++++|++|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999998753
No 483
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.56 E-value=0.053 Score=55.93 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.|.+-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
No 484
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.54 E-value=0.04 Score=52.66 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=9.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++++|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998864
No 485
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.52 E-value=0.053 Score=56.17 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
+++++|++|+|||||++.|.+--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
No 486
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.51 E-value=0.056 Score=53.58 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 003976 406 TFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~ 426 (782)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999985
No 487
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.49 E-value=0.12 Score=59.00 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=32.4
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCcCHHHHHhHc
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~di~~~~~~~lR~~i 454 (782)
....+.+||.+||||||+.+.|.+.+.- .+.|..-++.+.+|+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~-------~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW-------IGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh-------cCCCeEEecccHHHHHh
Confidence 4468999999999999999999876531 23333445666677664
No 488
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.46 E-value=0.079 Score=52.17 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.9
Q ss_pred CEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 405 KTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 405 ~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
-+++++|++|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999988543
No 489
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.43 E-value=0.078 Score=51.44 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=26.2
Q ss_pred ccccceEEeeCCCEEEEeCCCCCcHHHHHHHHHc
Q 003976 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 393 vL~~isl~i~~G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
.++..-+.+ .|.-+.|.|+||+||||+...|..
T Consensus 6 ~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455544444 588999999999999999988765
No 490
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.40 E-value=0.06 Score=57.17 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=22.7
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHcCCC
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQRLYE 429 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~~~~ 429 (782)
...+.|+||||||||||...|...++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999987763
No 491
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.40 E-value=0.052 Score=56.65 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=21.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
.++|||++|+|||||++.|.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999764
No 492
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.39 E-value=0.32 Score=51.98 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
.+.+.||.|+||||+++.+.+.+..
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCchHHHHHHHHHHHHhC
Confidence 4899999999999999999876643
No 493
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.34 E-value=0.058 Score=52.81 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 494
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.33 E-value=0.055 Score=51.54 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=24.4
Q ss_pred eCCCEEEEeCCCCCcHHHHHHHHHcCCCC
Q 003976 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEP 430 (782)
Q Consensus 402 ~~G~~vaivG~sGsGKSTl~~ll~~~~~~ 430 (782)
+.+..+.|+||+|+||||+++.+...+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44667899999999999999999877643
No 495
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.30 E-value=0.089 Score=52.23 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
+++++|++|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999998753
No 496
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.18 E-value=0.068 Score=56.60 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=22.4
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHcCC
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQRLY 428 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~~~ 428 (782)
++-+++++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999987654
No 497
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.16 E-value=0.1 Score=51.31 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.0
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHc
Q 003976 404 GKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 404 G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
.=+++++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34799999999999999988874
No 498
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.15 E-value=0.058 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.8
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHc
Q 003976 403 AGKTFAFVGPSGSGKSTIISMVQR 426 (782)
Q Consensus 403 ~G~~vaivG~sGsGKSTl~~ll~~ 426 (782)
+.=.++++|++|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999864
No 499
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.09 E-value=0.066 Score=51.80 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 003976 406 TFAFVGPSGSGKSTIISMVQRL 427 (782)
Q Consensus 406 ~vaivG~sGsGKSTl~~ll~~~ 427 (782)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999854
No 500
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.06 E-value=0.094 Score=52.80 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.8
Q ss_pred eeCCCEEEEeCCCCCcHHHHHHHH
Q 003976 401 VDAGKTFAFVGPSGSGKSTIISMV 424 (782)
Q Consensus 401 i~~G~~vaivG~sGsGKSTl~~ll 424 (782)
+++|+.+.|.|++|+||||++.-+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 799999999999999999997544
Done!