BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003977
(782 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 283/708 (39%), Positives = 395/708 (55%), Gaps = 76/708 (10%)
Query: 107 GQAFPIGVSEVEN--GINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKT 164
G +P+G + +E+ G+NF++FS++A V L L +K + +IE+ NKT
Sbjct: 15 GDPYPLGSNWIEDDDGVNFSLFSENAEKVELLLYSLTNQKYPKE---IIEVK-----NKT 66
Query: 165 GDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGR--------- 215
GDIWH+ + L R LY YRV GP G RF+ + VLIDPYAK + G
Sbjct: 67 GDIWHVFVPGL-RPGQLYAYRVYGPYKPELGLRFNPNKVLIDPYAKAINGSVIWNDAVFG 125
Query: 216 RHFGDASAKLS---KFLGTYEFESLP----FDWGDN--YKLPNIPEKDLVIYEMNVRAFT 266
GD + L+ + G Y +S+ F+W D K +P KD VIYE++V+ FT
Sbjct: 126 YKIGDQNQDLTYDERDSGEYVPKSVVINPYFEWDDEDFIKGKKVPLKDTVIYEVHVKGFT 185
Query: 267 GDESSGLDPEIRGSYLGLI--QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVN 324
L IRG+Y GL Q I +L +LGI VEL+PVF F + F + + N
Sbjct: 186 KLRLD-LPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKG----LTN 240
Query: 325 TWGYSTINFFSPMSRYAAGG--GGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADD 382
WGY INFFSP RY++ G GG + + FK+MV LH AGIEVI+DVVYNHT E +
Sbjct: 241 YWGYDPINFFSPECRYSSTGCLGGQVLS---FKKMVNELHNAGIEVIIDVVYNHTAEGNH 297
Query: 383 ANPYTTSFRGIDNKVYYMV--DGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYH 440
P T SFRGIDN YYM+ D L++ G GNTLN +HP V++++LDSLR+WV E H
Sbjct: 298 LGP-TLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMH 356
Query: 441 VDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDC-RGLYLVGKFPN 499
VDGFRFDLA+ L R + I A+ +D ILS+ K+IAEPWD +G Y VG FP
Sbjct: 357 VDGFRFDLAAALARELYSVNMLNTFFI-ALQQDPILSQVKLIAEPWDVGQGGYQVGNFPY 415
Query: 500 WDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGF 559
+WAEWNGKYRD +R+F +G+ +A R+ GS D+Y N + P+ SIN++ +HDGF
Sbjct: 416 --QWAEWNGKYRDSIRRFWRGEALPYSEIANRLLGSPDIYLGNNKTPFASINYVTSHDGF 473
Query: 560 TLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMV 619
TL DLVSYN KH +SWNCG EG T+D ++ R +Q +NF + L+V
Sbjct: 474 TLEDLVSYNQKHNEANGFNNQDGMNENYSWNCGAEGPTNDQNVVICREKQKRNFMITLLV 533
Query: 620 SQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRR 679
SQGTPM+L GDE T+ GNNN++ D I F W L+ +K+ F ++I+F ++
Sbjct: 534 SQGTPMILGGDELSRTQRGNNNAFCQDNEITWFDW-NLDERKSKFLEFVKKMIQFYRAHP 592
Query: 680 VFGREDFLN--------INDVTWH--------EDNWDNYDSKFLAFTLHDN--NGADIYL 721
F RE + + DVT++ E W + ++ + F L + + ++Y
Sbjct: 593 AFRRERYFQGKKLFGMPLKDVTFYTLEGREVDEKTWSS-PTQLVIFVLEGSVMDEINMYG 651
Query: 722 AFNAHDFFVKVSLPPPP------PKRQWFRVVDTNLES--PDDIVPEG 761
A D F+ + P PK +W V+ + L P++ + EG
Sbjct: 652 ERIADDSFLIILNANPNNVKVKFPKGKWELVISSYLREIKPEERIIEG 699
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 329 bits (843), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 221/587 (37%), Positives = 304/587 (51%), Gaps = 51/587 (8%)
Query: 107 GQAFPIGVSEVENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGD 166
G+ P+G G+NF +FS HA V LC+ ++ + +LP +GD
Sbjct: 7 GKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGQEHRY------DLP-----GHSGD 55
Query: 167 IWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGR------RHFG- 219
IWH + D R + YGYRV GP +GHRF+ + +LIDP A+ ++G H G
Sbjct: 56 IWHGYLPDA-RPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDGEFKDNPLLHAGH 114
Query: 220 ------DASAKLSKFLGTYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDESSGL 273
D +A K + + +DW D+ P P +IYE +V+ T +
Sbjct: 115 NEPDYRDNAAIAPKCVVVVDH----YDWEDDAP-PRTPWGSTIIYEAHVKGLTYLHPE-I 168
Query: 274 DPEIRGSY--LGLIQKIPHLLELGINAVELLPVFEF-DEMEFQRRRNPRDHMVNTWGYST 330
EIRG+Y LG I +L +LGI A+ELLPV +F E QR + N WGY+
Sbjct: 169 PVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMG-----LSNYWGYNP 223
Query: 331 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSF 390
+ F+ YA P A EF++ +KALH AGIEVILD+V NH+ E D P S
Sbjct: 224 VAMFALHPAYACS---PETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGP-LFSL 279
Query: 391 RGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 450
RGIDN+ YY + G N+ GCGNTLN +HP V++ LR+WV HVDGFRFDLA+
Sbjct: 280 RGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAA 339
Query: 451 VLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCR-GLYLVGKFPNWDRWAEWNGK 509
V+ R + PL AI +LS+ K+IAEPWD G Y VG FP +AEWN
Sbjct: 340 VMGRTPEFR--QDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFP--PLFAEWNDH 395
Query: 510 YRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNY 569
+RD R+F G A R + SSD+++ N R P +IN + AHDGFTL D V +N+
Sbjct: 396 FRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDCVCFNH 455
Query: 570 KHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMG 629
KH +S N G EG + R + L++SQGTPM+L G
Sbjct: 456 KHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQGTPMLLAG 515
Query: 630 DEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQ 676
DE+GH+++GNNN+Y D + W Q + + F + +I R+
Sbjct: 516 DEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTA---FTAALIHLRK 559
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 276 bits (706), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 240/762 (31%), Positives = 344/762 (45%), Gaps = 129/762 (16%)
Query: 121 INFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGD-IWHICIEDLPRSE 179
I F ++S AT + L L + G ++ ++ G +W + + P S
Sbjct: 18 ITFRVYSSQATRIVLYL---------YSAGYGVQESATYTLSPAGSGVWAVTV---PVSS 65
Query: 180 ---------VLYGYRVDGPR-----DWHQGH-------------RFDSSIVLIDPYAKLV 212
V YGYR GP +W +G RF+ + +L+DPYA+ V
Sbjct: 66 IKAAGITGAVYYGYRAWGPNWPYASNWGKGSQAGFVSDVDANGDRFNPNKLLLDPYAQEV 125
Query: 213 ---------EGRRHFGDASAKLSKFLGTYEFESL---PFDWGDNYKLPNIPEKDLVIYEM 260
+ F ++ + G Y + + P K P +KD VIYE+
Sbjct: 126 SQDPLNPSNQNGNVFASGASYRTTDSGIYAPKGVVLVPSTQSTGTK-PTRAQKDDVIYEV 184
Query: 261 NVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRD 320
+VR FT ++S + + RG+Y G K +L LG+ AVE LPV E N D
Sbjct: 185 HVRGFTEQDTS-IPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPN-SD 242
Query: 321 HMVNTWGYSTINFFSPMSRYA--AGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 378
N WGY T N+FSP RYA GGP EF+ MV+A H AGI+V +DVVYNHT
Sbjct: 243 ANQNYWGYMTENYFSPDRRYAYNKAAGGPTA---EFQAMVQAFHNAGIKVYMDVVYNHTA 299
Query: 379 EAD---DANPYTT---SFRGIDNKVYY-MVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 431
E ++P T S+RG+DN YY + G + G G N + V LI+DS
Sbjct: 300 EGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDS 359
Query: 432 LRHWVVEYHVDGFRFDLASVLCRGT-----DGSPLNAP-------PLIRAIAKDAIL--- 476
L +W VDGFRFDLASVL S N P +A + IL
Sbjct: 360 LAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAADSNVAINRILREF 419
Query: 477 --------SRCKIIAEPWDCRG-LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGI 527
S + AEPW G Y +G FP W+EWNG +RD LR+ + + G I
Sbjct: 420 TVRPAAGGSGLDLFAEPWAIGGNSYQLGGFP--QGWSEWNGLFRDSLRQ-AQNELGSMTI 476
Query: 528 LATR----ISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXX--XXXXXX 581
T+ SGSS+L++ + R P++SINFI HDG TL D+ S N +
Sbjct: 477 YVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDG 536
Query: 582 XXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNN 641
+SW+ G T A + +R F M+S GTP+M GDEY T NNN
Sbjct: 537 GTSTNYSWDQGMSAGTGAAVDQRRAARTGMAFE---MLSAGTPLMQGGDEYLRTLQCNNN 593
Query: 642 SYGHDTAIN--NFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHE--- 696
+Y D++ N + W T +++ Y F +I FR++ + + + +TW++
Sbjct: 594 AYNLDSSANWLTYSW---TTDQSNFYTFAQRLIAFRKAHPALRPSSWYSGSQLTWYQPSG 650
Query: 697 -----DNWDNYDSKFLAF-----TLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRV 746
+ W+N + +A+ +L D+N IY+A+N V +LP PP QW+RV
Sbjct: 651 AVADSNYWNNTSNYAIAYAINGPSLGDSN--SIYVAYNGWSSSVTFTLPAPPSGTQWYRV 708
Query: 747 VDTN--LESPDDIVPEGA----AGTGSTYNLSPYSSILLEAK 782
DT + V G+ G G+TY S +LL +K
Sbjct: 709 TDTCDWNDGASTFVAPGSETLIGGAGTTYGQCGQSLLLLISK 750
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 140/504 (27%), Positives = 215/504 (42%), Gaps = 92/504 (18%)
Query: 205 IDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDW-GDNYKLPNIPEKDLVIYEMNVR 263
+DPYA+ + S ++ + + P W GD+ + P P D VIYE +VR
Sbjct: 392 VDPYARAI---------SVNATRGMIVDLKATDPAGWQGDHEQTPANP-VDEVIYEAHVR 441
Query: 264 AFTGDESSGLDPEIRGSYLGLIQK-----------IPHLLELGINAVELLPVFEFDEMEF 312
F+ D +SG+ + +G YL + I L ELGI V+L PV EF+ ++
Sbjct: 442 DFSIDANSGM--KNKGKYLAFTEHGTKGPDHVKTGIDSLKELGITTVQLQPVEEFNSID- 498
Query: 313 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 372
P + WGY N+ P YA G + + E K+++++LH I V +DV
Sbjct: 499 --ETQPDTY---NWGYDPRNYNVPEGAYATTPEGTARIT-ELKQLIQSLHQQRIGVNMDV 552
Query: 373 VYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSL 432
VYNHT + + F I + YY D G N +G GN HP+ + +LDS+
Sbjct: 553 VYNHTFDV-----MVSDFDKIVPQYYYRTDSNGNYTNGSGXGNEFATEHPMAQKFVLDSV 607
Query: 433 RHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWD--CRG 490
+WV EYHVDGFRFDL ++L + T N + AI +L EPW G
Sbjct: 608 NYWVNEYHVDGFRFDLMALLGKDTMAKISNE---LHAINPGIVL-----YGEPWTGGTSG 659
Query: 491 LYLVGKFPNWDRWAEWNGKYRDDLRK-------------FIKGDPGMKGILATRISGSSD 537
L + G + D++R F GDP ++ + GS
Sbjct: 660 LSSDQLVTKGQQKGLGIGVFNDNIRNGLDGNVFDKTAQGFATGDPNQVDVIKNGVIGSIQ 719
Query: 538 LYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGET 597
+ P +IN++ +HD TL+D + +
Sbjct: 720 DF---TSAPSETINYVTSHDNMTLWDKIL-----------------------------AS 747
Query: 598 DDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQL 657
+ + +A R + + H + SQG P M G+E T+ GN+NSY ++N F W +
Sbjct: 748 NPSDTEADRIKMDELAHAVVFTSQGVPFMQGGEEMLRTKGGNDNSYNAGDSVNQFDWSRK 807
Query: 658 ETKKNSHYRFFSEVIKFRQSRRVF 681
K+ + +FS +I R F
Sbjct: 808 AQFKDV-FDYFSSMIHLRNQHPAF 830
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 139 bits (349), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 131/465 (28%), Positives = 202/465 (43%), Gaps = 96/465 (20%)
Query: 254 DLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-----------IPHLLELGINAVELL 302
D VIYE ++R F+ E+SG+ +G YL L + + ++ ELG+ VELL
Sbjct: 214 DAVIYETHLRDFSIHENSGMIN--KGKYLALTETDTQTANGSSSGLAYVKELGVTHVELL 271
Query: 303 PVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 362
PV +F ++ ++ P D WGY+ ++FF+P YA+ P E K+M+ LH
Sbjct: 272 PVNDFAGVDEEK---PLD--AYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLH 326
Query: 363 GAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHP 422
G+ VILDVV+NH + +++ P+ + G ++ D G+ N G GN +
Sbjct: 327 QHGLRVILDVVFNHVYKRENS-PFEKTVPG----YFFRHDECGKPSNGTGVGNDIASERR 381
Query: 423 VVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKII 482
+ + I D + +W+ EY+VDGFRFDL +L D + AK IL +
Sbjct: 382 MARKFIADCVVYWLEEYNVDGFRFDLLGIL----DIDTVLYMKEKATKAKPGIL----LF 433
Query: 483 AEPWDCRGLYLVGKFPNWDRWAEWN-------GKYRDDLRKFIKGD-------------- 521
E WD L P+ + A N G + D R +KG+
Sbjct: 434 GEGWD-----LATPLPHEQKAALANAPRMPGIGFFNDMFRDAVKGNTFHLKATGFALGNG 488
Query: 522 ----PGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXX 577
M GI + SG L + +P SIN++ +HD T +D +S+
Sbjct: 489 ESAQAVMHGIAGS--SGWKALAPIVP-EPSQSINYVESHDNHTFWDKMSF---------- 535
Query: 578 XXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRY 637
E D RSRQ + L+ +QG P + G E+ T+
Sbjct: 536 --------------ALPQENDSRK----RSRQRLAVAIILL-AQGVPFIHSGQEFFRTKQ 576
Query: 638 GNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVF 681
G NSY +IN W + ET K++ HY +I R++ F
Sbjct: 577 GVENSYQSSDSINQLDWDRRETFKEDVHY--IRRLISLRKAHPAF 619
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 123/478 (25%), Positives = 206/478 (43%), Gaps = 70/478 (14%)
Query: 193 HQGHRFDSSIVLIDPYAKLVEGRRHFG---DASAKLSK--FLGTYEFESLPFDWGDNYKL 247
+Q R +++ +DPYAK + D + K++K F+ + +G K+
Sbjct: 87 YQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYG---KI 143
Query: 248 PNIPEK-DLVIYEMNVRAFTGDESSGLD-PEIRGSYLGLIQKIPHLLELGINAVELLPVF 305
N + D VIYE +VR FT D + D + G++ I+K+ +L +LG+ ++LLPV
Sbjct: 144 HNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVL 203
Query: 306 EF---DEMEFQRRRN--PRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 360
+ +E++ R + + WGY N+FS Y++ P K EFK ++
Sbjct: 204 SYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINE 263
Query: 361 LHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCN 420
+H G+ ILDVVYNHT + D F ++ Y+ +D G G G L
Sbjct: 264 IHKRGMGAILDVVYNHTAKVD-------LFEDLEPNYYHFMDADGTPRTSFGGGR-LGTT 315
Query: 421 HPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCK 480
H + L++DS+++ V Y VDGFRFD+ + S A RA+ + I+
Sbjct: 316 HHMTKRLLIDSIKYLVDTYKVDGFRFDM---MGDHDAASIEEAYKAARALNPNLIM---- 368
Query: 481 IIAEPWDC----RGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSS 536
+ E W + +W + + + DD+R +K +G A G
Sbjct: 369 -LGEGWRTYAGDENMPTKAADQDWMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKR 427
Query: 537 DLYRVNKR-----------KPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXX 585
D+ + K P I +I AHD TL+D+++ + K
Sbjct: 428 DVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDNLTLFDIIAQSIKK-------------- 473
Query: 586 XFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 643
+ A A R+++ +L ++ +QGTP + G EYG T+ N +Y
Sbjct: 474 ----------DPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 521
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 123/478 (25%), Positives = 206/478 (43%), Gaps = 70/478 (14%)
Query: 193 HQGHRFDSSIVLIDPYAKLVEGRRHFG---DASAKLSK--FLGTYEFESLPFDWGDNYKL 247
+Q R +++ +DPYAK + D + K++K F+ + +G K+
Sbjct: 88 YQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYG---KI 144
Query: 248 PNIPEK-DLVIYEMNVRAFTGDESSGLD-PEIRGSYLGLIQKIPHLLELGINAVELLPVF 305
N + D VIYE +VR FT D + D + G++ I+K+ +L +LG+ ++LLPV
Sbjct: 145 HNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVL 204
Query: 306 EF---DEMEFQRRRN--PRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 360
+ +E++ R + + WGY N+FS Y++ P K EFK ++
Sbjct: 205 SYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINE 264
Query: 361 LHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCN 420
+H G+ ILDVVYNHT + D F ++ Y+ +D G G G L
Sbjct: 265 IHKRGMGAILDVVYNHTAKVD-------LFEDLEPNYYHFMDADGTPRTSFGGGR-LGTT 316
Query: 421 HPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCK 480
H + L++DS+++ V Y VDGFRFD+ + S A RA+ + I+
Sbjct: 317 HHMTKRLLIDSIKYLVDTYKVDGFRFDM---MGDHDAASIEEAYKAARALNPNLIM---- 369
Query: 481 IIAEPWDC----RGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSS 536
+ E W + +W + + + DD+R +K +G A G
Sbjct: 370 -LGEGWRTYAGDENMPTKAADQDWMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKR 428
Query: 537 DLYRVNKR-----------KPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXX 585
D+ + K P I +I AHD TL+D+++ + K
Sbjct: 429 DVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDDLTLFDIIAQSIKK-------------- 474
Query: 586 XFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 643
+ A A R+++ +L ++ +QGTP + G EYG T+ N +Y
Sbjct: 475 ----------DPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 522
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 123/478 (25%), Positives = 206/478 (43%), Gaps = 70/478 (14%)
Query: 193 HQGHRFDSSIVLIDPYAKLVEGRRHFG---DASAKLSK--FLGTYEFESLPFDWGDNYKL 247
+Q R +++ +DPYAK + D + K++K F+ + +G K+
Sbjct: 394 YQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYG---KI 450
Query: 248 PNIPEK-DLVIYEMNVRAFTGDESSGLD-PEIRGSYLGLIQKIPHLLELGINAVELLPVF 305
N + D VIYE +VR FT D + D + G++ I+K+ +L +LG+ ++LLPV
Sbjct: 451 HNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVL 510
Query: 306 EF---DEMEFQRRRN--PRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 360
+ +E++ R + + WGY N+FS Y++ P K EFK ++
Sbjct: 511 SYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINE 570
Query: 361 LHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCN 420
+H G+ ILDVVYNHT + D F ++ Y+ +D G G G L
Sbjct: 571 IHKRGMGAILDVVYNHTAKVD-------LFEDLEPNYYHFMDADGTPRTSFGGGR-LGTT 622
Query: 421 HPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCK 480
H + L++DS+++ V Y VDGFRFD+ + S A RA+ + I+
Sbjct: 623 HHMTKRLLIDSIKYLVDTYKVDGFRFDM---MGDHDAASIEEAYKAARALNPNLIM---- 675
Query: 481 IIAEPWDC----RGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSS 536
+ E W + +W + + + DD+R +K +G A G
Sbjct: 676 -LGEGWRTYAGDENMPTKAADQDWMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKR 734
Query: 537 DLYRVNKR-----------KPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXX 585
D+ + K P I +I AHD TL+D+++ + K
Sbjct: 735 DVNTIFKNLIAQPTNFEADSPGDVIQYIAAHDNLTLFDIIAQSIKK-------------- 780
Query: 586 XFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 643
+ A A R+++ +L ++ +QGTP + G EYG T+ N +Y
Sbjct: 781 ----------DPSKAENYAEIHRRLRLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 828
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 136/551 (24%), Positives = 226/551 (41%), Gaps = 114/551 (20%)
Query: 197 RFDSSIVLIDPYAK-LVEGRRHFGDASAKLSK--FLGTYEF--ESLPFDWGDNYKLPNIP 251
R + ++DPYAK L E + + K +K F+ + ++L F N+K
Sbjct: 209 RGKDKVKILDPYAKSLAEWDSNTVNDDIKTAKAAFVNPSQLGPQNLSFAKIANFK----G 264
Query: 252 EKDLVIYEMNVRAFTGDESSGLDPEIR---GSYLGLIQKIPHLLELGINAVELLPVFEF- 307
+D VIYE +VR FT D+S LD +++ G++ +K+ +L +LG+ ++LLPV +
Sbjct: 265 RQDAVIYEAHVRDFTSDQS--LDGKLKNQLGTFAAFSEKLDYLQKLGVTHIQLLPVLSYF 322
Query: 308 --DEMEFQRRR--NPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 363
+EM+ R D+ N WGY ++F+ Y+ P E K+++ +H
Sbjct: 323 YVNEMDKSRSTAYTSSDNNYN-WGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHK 381
Query: 364 AGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPV 423
G+ VILDVVYNHT + T F I+ Y+ ++ G G G L H +
Sbjct: 382 RGMGVILDVVYNHTAK-------TYLFEDIEPNYYHFMNEDGSPRESFGGGR-LGTTHAM 433
Query: 424 VMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIA 483
+++DS+++ E+ VDGFRFD+ G A + AI +I
Sbjct: 434 SRRVLVDSIKYLTSEFKVDGFRFDMM--------GDHDAAAIELAYKEAKAINPNMIMIG 485
Query: 484 EPWDC----RGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLY 539
E W +G + +W + + G + DD+R +K +G A G L
Sbjct: 486 EGWRTFQGDQGKPVKPADQDWMKSTDTVGVFSDDIRNSLKSGFPNEGTPAFITGGPQSLQ 545
Query: 540 RVNKR-----------KPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFS 588
+ K P + +I AHD TL+D+++ S
Sbjct: 546 GIFKNIKAQPGNFEADSPGDVVQYIAAHDNLTLHDVIAK--------------------S 585
Query: 589 WNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTR------------ 636
N + +D R+++ ++ ++ SQGT + G EYG T+
Sbjct: 586 INKDPKVAEEDI------HRRLRLGNVMILTSQGTAFIHSGQEYGRTKRLLNPDYMTKVS 639
Query: 637 ------------------YGNNNSYGHDTAINNFQWGQLETKKNSH------YRFFSEVI 672
Y ++SY AIN+F W T N H + + +I
Sbjct: 640 DDKLPNKATLIEAVKEYPYFIHDSYDSSDAINHFDWAA-ATDNNKHPISTKTQAYTAGLI 698
Query: 673 KFRQSRRVFGR 683
R+S F +
Sbjct: 699 TLRRSTDAFRK 709
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 122/269 (45%), Gaps = 41/269 (15%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGL-------IQKIPHLLELGINAVELLPVF 305
D+ IYE+++R F+ + + +D + RG + ++ + L + G+ V LLP F
Sbjct: 251 SDITIYELHIRDFSAHDGT-VDSDSRGGFRAFAYQASAGMEHLRKLSDAGLTHVHLLPSF 309
Query: 306 EF-------------DEMEFQRRRNPRDHMVNT-----------WGYSTINFFSPMSRYA 341
F DE E D WGY+ + + P YA
Sbjct: 310 HFAGVDDIKSNWKFVDECELATFPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPKGSYA 369
Query: 342 AGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMV 401
+ GP + E+++MV+AL+ G+ V++DVVYNH + + ++ I Y
Sbjct: 370 SDPDGPSRI-IEYRQMVQALNRIGLRVVMDVVYNHLDSSGPCG-ISSVLDKIVPGYYVRR 427
Query: 402 DGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPL 461
D GQ+ N A NT + H +V LI+D L +W V Y VDGFRFDL + + T +
Sbjct: 428 DTNGQIENSAAMNNTAS-EHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMKRT---MM 483
Query: 462 NAPPLIRAIAKDA---ILSRCKIIAEPWD 487
A ++++ DA S+ + E WD
Sbjct: 484 RAKSALQSLTTDAHGVDGSKIYLYGEGWD 512
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 128/326 (39%), Gaps = 80/326 (24%)
Query: 192 WHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLPNIP 251
+H R + DPYA H +++ S+ + + P W D +P+
Sbjct: 364 YHPQSRKVEQYEVTDPYA-------HSLSTNSEYSQVVDLNDSALKPEGW-DGLTMPHAQ 415
Query: 252 E-----KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGL-------IQKIPHLLELGINAV 299
+ + I+E ++R + + + + E+RG YL L +Q + L G+ +
Sbjct: 416 KTKADLAKMTIHESHIRDLSAWDQT-VPAELRGKYLALTAQESNMVQHLKQLSASGVTHI 474
Query: 300 ELLPVFEFD------------EMEFQR--------------------------------- 314
ELLPVF+ + F R
Sbjct: 475 ELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQN 534
Query: 315 --RRNPRDHMVNT---------WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL-H 362
+ NP+ +NT WGY ++ P YA G + EF+ M++A+
Sbjct: 535 DSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK-EFRTMIQAIKQ 593
Query: 363 GAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHP 422
G+ VI+DVVYNHTN A + T+ I Y ++ T + A C + H
Sbjct: 594 DLGMNVIMDVVYNHTNAAGPTD-RTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHR 652
Query: 423 VVMELILDSLRHWVVEYHVDGFRFDL 448
+ +LI DSL W +Y +DGFRFDL
Sbjct: 653 MFAKLIADSLAVWTTDYKIDGFRFDL 678
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 53/215 (24%)
Query: 250 IPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDE 309
+ ++DL+IYE++V FT PE G++ G+I+K+ +L +LGI A+E++P+ +F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFP- 145
Query: 310 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVI 369
RD WGY + ++ + Y GGP F+++V H G+ VI
Sbjct: 146 -------GKRD-----WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVI 185
Query: 370 LDVVYNHT----NEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 425
LDVVYNH N PY + + + D + V
Sbjct: 186 LDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFD---------------DAESDEVR 230
Query: 426 ELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 460
+ IL+++ +W+ EY+VDGFR D + D SP
Sbjct: 231 KFILENVEYWIKEYNVDGFRLDAVHAII---DTSP 262
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 53/215 (24%)
Query: 250 IPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDE 309
+ ++DL+IYE++V FT PE G++ G+I+K+ +L +LGI A+E++P+ +F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFP- 145
Query: 310 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVI 369
RD WGY + ++ + Y GGP F+++V H G+ VI
Sbjct: 146 -------GKRD-----WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVI 185
Query: 370 LDVVYNHT----NEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 425
LDVVYNH N PY + + + D + V
Sbjct: 186 LDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFD---------------DAESDEVR 230
Query: 426 ELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 460
+ IL+++ +W+ EY+VDGFR D + D SP
Sbjct: 231 KFILENVEYWIKEYNVDGFRLDAVHAII---DTSP 262
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 125/314 (39%), Gaps = 80/314 (25%)
Query: 204 LIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLPNIPE-----KDLVIY 258
+ DPYA H +++ S+ + + P W D +P+ + + I+
Sbjct: 213 VTDPYA-------HSLSTNSEYSQVVDLNDSALKPEGW-DGLTMPHAQKTKADLAKMTIH 264
Query: 259 EMNVRAFTGDESSGLDPEIRGSYLGL-------IQKIPHLLELGINAVELLPVFEFD--- 308
E ++R + + + + E+RG YL L +Q + L G+ +ELLPVF+
Sbjct: 265 ESHIRDLSAWDQT-VPAELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVN 323
Query: 309 ---------EMEFQR-----------------------------------RRNPRDHMVN 324
+ F R + NP+ +N
Sbjct: 324 EFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALN 383
Query: 325 T---------WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL-HGAGIEVILDVVY 374
T WGY ++ P YA G + EF+ M++A+ G+ VI+DVVY
Sbjct: 384 TLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK-EFRTMIQAIKQDLGMNVIMDVVY 442
Query: 375 NHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRH 434
NHTN A + T+ I Y ++ T + A C + H + +LI DSL
Sbjct: 443 NHTNAAGPTD-RTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAV 501
Query: 435 WVVEYHVDGFRFDL 448
W +Y +DGFRFDL
Sbjct: 502 WTTDYKIDGFRFDL 515
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 105/258 (40%), Gaps = 67/258 (25%)
Query: 255 LVIYEMNVRAFTGDESSGLDPEIRGSYLGL-------IQKIPHLLELGINAVELLPVFEF 307
+ I+E ++R + + + + E+RG YL L +Q + L G+ +ELLPVF+
Sbjct: 267 MTIHESHIRDLSAWDQT-VPAELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDL 325
Query: 308 D------------EMEFQR-----------------------------------RRNPRD 320
+ F R + NP+
Sbjct: 326 ATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQV 385
Query: 321 HMVNT---------WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL-HGAGIEVIL 370
+NT WGY ++ P YA G + EF+ M++A+ G+ VI+
Sbjct: 386 QALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK-EFRTMIQAIKQDLGMNVIM 444
Query: 371 DVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 430
DVVYNHTN A + T+ I Y ++ T + A C + H + +LI D
Sbjct: 445 DVVYNHTNAAGPTD-RTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIAD 503
Query: 431 SLRHWVVEYHVDGFRFDL 448
SL W +Y +DGFRFDL
Sbjct: 504 SLAVWTTDYKIDGFRFDL 521
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 53/215 (24%)
Query: 250 IPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDE 309
+ ++DL+IYE++V FT PE G++ G+I+K+ +L +LGI A+E++P+ +F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFP- 145
Query: 310 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVI 369
RD WGY + ++ + Y GGP F+++V H G+ VI
Sbjct: 146 -------GKRD-----WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVI 185
Query: 370 LDVVYNHT----NEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 425
LDVVYNH N PY + + + D + V
Sbjct: 186 LDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFD---------------DAESDEVR 230
Query: 426 ELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 460
+ IL+++ +W+ EY+VDGFR D + D SP
Sbjct: 231 KFILENVEYWIKEYNVDGFRLDAVHAII---DTSP 262
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 105/258 (40%), Gaps = 67/258 (25%)
Query: 255 LVIYEMNVRAFTGDESSGLDPEIRGSYLGL-------IQKIPHLLELGINAVELLPVFEF 307
+ I+E ++R + + + + E+RG YL L +Q + L G+ +ELLPVF+
Sbjct: 263 MTIHESHIRDLSAWDQT-VPAELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDL 321
Query: 308 D------------EMEFQR-----------------------------------RRNPRD 320
+ F R + NP+
Sbjct: 322 ATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQV 381
Query: 321 HMVNT---------WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL-HGAGIEVIL 370
+NT WGY ++ P YA G + EF+ M++A+ G+ VI+
Sbjct: 382 QALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK-EFRTMIQAIKQDLGMNVIM 440
Query: 371 DVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 430
DVVYNHTN A + T+ I Y ++ T + A C + H + +LI D
Sbjct: 441 DVVYNHTNAAGPTD-RTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIAD 499
Query: 431 SLRHWVVEYHVDGFRFDL 448
SL W +Y +DGFRFDL
Sbjct: 500 SLAVWTTDYKIDGFRFDL 517
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 53/215 (24%)
Query: 250 IPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDE 309
+ ++DL+IYE++V FT PE G++ G+I+K+ +L +LGI A+E++P+ +F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFP- 145
Query: 310 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVI 369
RD WGY + ++ + Y GGP F+++V H G+ VI
Sbjct: 146 -------GKRD-----WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVI 185
Query: 370 LDVVYNHT----NEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 425
LDVVYNH N PY + + + D + V
Sbjct: 186 LDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFD---------------DAESDEVR 230
Query: 426 ELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 460
+ IL+++ +W+ EY+VDGFR + + D SP
Sbjct: 231 KFILENVEYWIKEYNVDGFRLEAVHAII---DTSP 262
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 44/192 (22%)
Query: 256 VIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 315
V+YEM+ FT PE G++ I K+P+L ELG+ +E++PV +F
Sbjct: 138 VVYEMHTGTFT--------PE--GTFRAAIAKLPYLAELGVTVIEVMPVAQFGGE----- 182
Query: 316 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 375
WGY + ++P S Y G P +FK + A HG G+ V+LD+V N
Sbjct: 183 --------RGWGYDGVLLYAPHSAY----GTPD----DFKAFIDAAHGYGLSVVLDIVLN 226
Query: 376 HTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHW 435
H F N + + GN + + V I+++ +W
Sbjct: 227 H-------------FGPEGNYLPLLAPAFFHKERMTPWGNGIAYDVDAVRRYIIEAPLYW 273
Query: 436 VVEYHVDGFRFD 447
+ EYH+DG RFD
Sbjct: 274 LTEYHLDGLRFD 285
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 53/215 (24%)
Query: 250 IPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDE 309
+ ++DL+IYE++V FT PE G++ G+I+K+ +L +LGI A+E++P+ +F
Sbjct: 97 LKKEDLIIYEIHVGTFT--------PE--GTFEGVIRKLDYLKDLGITAIEIMPIAQFP- 145
Query: 310 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVI 369
RD WGY + ++ + Y GGP F+++V H G+ VI
Sbjct: 146 -------GKRD-----WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVI 185
Query: 370 LDVVYNHT----NEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 425
LDVVYNH N PY + + + D + V
Sbjct: 186 LDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFD---------------DAESDEVR 230
Query: 426 ELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 460
+ IL+++ +W+ EY+VDGFR + D SP
Sbjct: 231 KFILENVEYWIKEYNVDGFRLSAVHAII---DTSP 262
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 107/242 (44%), Gaps = 56/242 (23%)
Query: 206 DPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAF 265
DPYA+ + H A++ F GT FDW D I D V YE++V F
Sbjct: 90 DPYARFLPDGVH---GEAEVVDF-GT-------FDWTDA-DWHGIKLADCVFYEVHVGTF 137
Query: 266 TGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT 325
T PE G+Y +K+P+L ELG+ A++++P+ FD QR
Sbjct: 138 T--------PE--GTYRAAAEKLPYLKELGVTAIQVMPLAAFDG---QR----------G 174
Query: 326 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 385
WGY F++P + Y G P + +V A H G+ V LDVVYNH + +
Sbjct: 175 WGYDGAAFYAPYAPY----GRPE----DLMALVDAAHRLGLGVFLDVVYNHFGPSGN--- 223
Query: 386 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 445
Y +S+ Y D + + G G L+ P + + + R W+ +YH DG R
Sbjct: 224 YLSSY-----APSYFTD---RFSSAWGMG--LDYAEPHMRRYVTGNARMWLRDYHFDGLR 273
Query: 446 FD 447
D
Sbjct: 274 LD 275
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 101/242 (41%), Gaps = 56/242 (23%)
Query: 206 DPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAF 265
DPYA+ + H A++ F GT FDW D I D V YE++V F
Sbjct: 90 DPYARFLPDGVH---GEAEVVDF-GT-------FDWTDA-DWHGIKLADCVFYEVHVGTF 137
Query: 266 TGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT 325
T PE G+Y +K+P+L ELG+ A+++ P+ FD
Sbjct: 138 T--------PE--GTYRAAAEKLPYLKELGVTAIQVXPLAAFDGQ-------------RG 174
Query: 326 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 385
WGY F++P + Y G P + +V A H G+ V LDVVYNH + +
Sbjct: 175 WGYDGAAFYAPYAPY----GRPE----DLXALVDAAHRLGLGVFLDVVYNHFGPSGN--- 223
Query: 386 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 445
Y +S+ Y D + G L+ P + + R W+ +YH DG R
Sbjct: 224 YLSSY-----APSYFTD-----RFSSAWGXGLDYAEPHXRRYVTGNARXWLRDYHFDGLR 273
Query: 446 FD 447
D
Sbjct: 274 LD 275
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 147/340 (43%), Gaps = 69/340 (20%)
Query: 117 VENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLP 176
V +G++FA+++ +A V+L E W E P+ RV +W + D P
Sbjct: 134 VVSGVSFAVWAPNAKGVSLI-----GEFNGWNGH---EAPM--RVLGPSGVWELFWPDFP 183
Query: 177 RSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFG-DASAKLSKFLGTYEFE 235
+ LY +RV G G D + DP+A FG + + + + + ++
Sbjct: 184 -CDGLYKFRVHGA----DGVVTDRA----DPFA--------FGTEVPPQTASRVTSSDYT 226
Query: 236 SLPFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIP-HLLEL 294
DW L N + + YE+++ G GL SY L +++ ++++
Sbjct: 227 WGDDDWMAGRALRNPVNEAMSTYEVHL----GSWRPGL------SYRQLARELTDYIVDQ 276
Query: 295 GINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEF 354
G VELLPV E +WGY ++++P SR+ G P +F
Sbjct: 277 GFTHVELLPVAEHP-------------FAGSWGYQVTSYYAPTSRF----GTPD----DF 315
Query: 355 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVD-GTGQLLNYAGC 413
+ +V ALH AGI VI+D V H + A F G +Y D G+ L++
Sbjct: 316 RALVDALHQAGIGVIVDWVPAHFPKDAWA---LGRFDG--TPLYEHSDPKRGEQLDWGTY 370
Query: 414 GNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD-LASVL 452
+ P V ++ + +W+ E+H+DG R D +AS+L
Sbjct: 371 --VFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASML 408
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 51/218 (23%)
Query: 255 LVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQR 314
++ Y++ VR+F G+ G + GL + +L ELGI+ V L+PVF
Sbjct: 1 MIGYQIYVRSFRDGNLDGV-----GDFRGLKNAVSYLKELGIDFVWLMPVFS-------- 47
Query: 315 RRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVY 374
++ GY ++F+S + Y + EFKEM++A H +GI+V+LD+
Sbjct: 48 -------SISFHGYDVVDFYSFKAEYGSER--------EFKEMIEAFHDSGIKVVLDLPI 92
Query: 375 NHT-------NEADDANPYTTSFRGIDN--------------KVYY-MVDGTGQLLNYAG 412
+HT +A +P+ + N K+++ + DG +
Sbjct: 93 HHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGP 152
Query: 413 CGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 450
LN ++P V + + + H +++ VDGFRFD A
Sbjct: 153 FSPDLNYDNPQVFDEMKRLVLH-LLDMGVDGFRFDAAK 189
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 58/227 (25%)
Query: 252 EKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHL--------LELGINAVELLP 303
EK YE+ VR+F + G+ G G+I+K+ +L +LG+N + L+P
Sbjct: 2 EKHGTYYEIFVRSFYDSDGDGI-----GDLKGIIEKLDYLNDGDPETIADLGVNGIWLMP 56
Query: 304 VFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 363
+F ++P H GY +++ Y G L+ +F ++V+A H
Sbjct: 57 IF----------KSPSYH-----GYDVTDYYKINPDY-----GTLE---DFHKLVEAAHQ 93
Query: 364 AGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDG-----------TGQLLNYAG 412
GI+VI+D+ NHT+E + + + + YY+ G G++ +Y+
Sbjct: 94 RGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSP 153
Query: 413 CGN----------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLA 449
G LN N+P V E ++ ++W+ + VDGFR D A
Sbjct: 154 TGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGA 199
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 38/185 (20%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G G+I + HL +LG+NAV P+F+ Y T ++F
Sbjct: 169 GDLQGVIDHLDHLSKLGVNAVYFTPLFK---------------ATTNHKYDTEDYFQIDP 213
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 398
++ K++V H GI V+LD V+NH+ P+ + + Y
Sbjct: 214 QFGDKD--------TLKKLVDLCHERGIRVLLDAVFNHSGRT--FPPFVDVLKNGEKSKY 263
Query: 399 Y-----------MVDG--TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 445
+VDG T + LN HP V E +L + +W+ E +DG+R
Sbjct: 264 KDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWR 323
Query: 446 FDLAS 450
D+A+
Sbjct: 324 LDVAN 328
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 45/186 (24%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G+ G+ +K+P+LL+LG+ A+ L PV F N R H V+ + I
Sbjct: 47 GTLWGVAEKLPYLLDLGVEAIYLNPV-------FASTANHRYHTVDYFQVDPI------- 92
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTT 388
L + + +++ H G+ VILD V+NHT E + +PY
Sbjct: 93 ---------LGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLXENGEQSPYRD 143
Query: 389 SF--RGIDNKVYYMVDGTGQLLNYAGCGN----TLNCNHPVVMELILDSLRHWVVEYHVD 442
+ +G K Y T A GN L P V E +L HW + + VD
Sbjct: 144 WYHVKGFPLKAY-----TAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHW-IRFGVD 197
Query: 443 GFRFDL 448
G+R D+
Sbjct: 198 GWRLDV 203
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 48/213 (22%)
Query: 245 YKLPNIPEKDL-VIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLP 303
+K P P+ D IYE +V SG +PE+ +P + N V+L+
Sbjct: 170 FKHPRPPKPDAPRIYEAHVGM------SGEEPEVSTYREFADNVLPRIRANNYNTVQLMA 223
Query: 304 VFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 363
+ E ++GY NFF+ SR G P + K +V H
Sbjct: 224 IMEHS-------------YYASFGYHVTNFFAVSSR----SGTPE----DLKYLVDKAHS 262
Query: 364 AGIEVILDVVYNH-TNEADDA--------NPYTTSFRGIDNKVYYMVDGTGQLLNYAGCG 414
G+ V++DVV++H +N D N + + F D + + D +L NYA
Sbjct: 263 LGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDS--RLFNYANWE 320
Query: 415 NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
V+ +L +LR+W+ E+ DGFRFD
Sbjct: 321 ---------VLRFLLSNLRYWMDEFMFDGFRFD 344
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 48/213 (22%)
Query: 245 YKLPNIPEKDL-VIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLP 303
+K P P+ D IYE +V SG +PE+ +P + N V+L+
Sbjct: 170 FKHPRPPKPDAPRIYEAHVGM------SGEEPEVSTYREFADNVLPRIRANNYNTVQLMA 223
Query: 304 VFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 363
+ E ++GY NFF+ SR G P + K +V H
Sbjct: 224 IMEHS-------------YYASFGYHVTNFFAVSSR----SGTPE----DLKYLVDKAHS 262
Query: 364 AGIEVILDVVYNH-TNEADDA--------NPYTTSFRGIDNKVYYMVDGTGQLLNYAGCG 414
G+ V++DVV++H +N D N + + F D + + D +L NYA
Sbjct: 263 LGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDS--RLFNYANWE 320
Query: 415 NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
V+ +L +LR+W+ E+ DGFRFD
Sbjct: 321 ---------VLRFLLSNLRYWMDEFMFDGFRFD 344
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 35/183 (19%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G G+I + +L +LGI + L P+F R P +H +T Y I+
Sbjct: 173 GDLQGIIDHLDYLADLGITGIYLTPIF----------RAPSNHKYDTADYFEID------ 216
Query: 339 RYAAGGGGPLKASWE-FKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYT 387
P E K +VK H GI V+LD V+NH + A+ Y
Sbjct: 217 --------PHFGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYK 268
Query: 388 TSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
F + + + LN HP V +LD +W+ E+ +DG+R D
Sbjct: 269 DWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLD 328
Query: 448 LAS 450
+A+
Sbjct: 329 VAN 331
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 35/183 (19%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G G+I + +L +LGI + L P+F R P +H +T Y I+
Sbjct: 173 GDLQGIIDHLDYLADLGITGIYLTPIF----------RAPSNHKYDTADYFEID------ 216
Query: 339 RYAAGGGGPLKASWE-FKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYT 387
P E K +VK H GI V+LD V+NH + A+ Y
Sbjct: 217 --------PHFGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYK 268
Query: 388 TSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
F + + + LN HP V +LD +W+ E+ +DG+R D
Sbjct: 269 DWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLD 328
Query: 448 LAS 450
+A+
Sbjct: 329 VAN 331
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 33/182 (18%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G G+I + +L++LGI + L P+F R+P +H Y T ++F
Sbjct: 173 GDLQGIIDHLDYLVDLGITGIYLTPIF----------RSPSNH-----KYDTADYFEVDP 217
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTT 388
+ G LK ++ H GI V+LD V+NH + +++ Y
Sbjct: 218 HF--GDKETLKT------LIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKD 269
Query: 389 SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 448
F + + + LN +P V +LD +W+ E+ +DG+R D+
Sbjct: 270 WFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDV 329
Query: 449 AS 450
A+
Sbjct: 330 AN 331
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 33/182 (18%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G G+I + +L++LGI + L P+F R+P +H Y T ++F
Sbjct: 173 GDLQGIIDHLDYLVDLGITGIYLTPIF----------RSPSNH-----KYDTADYFEVDP 217
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTT 388
+ G LK ++ H GI V+LD V+NH + +++ Y
Sbjct: 218 HF--GDKETLKT------LIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKD 269
Query: 389 SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 448
F + + + LN +P V +LD +W+ E+ +DG+R D+
Sbjct: 270 WFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDV 329
Query: 449 AS 450
A+
Sbjct: 330 AN 331
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 102/236 (43%), Gaps = 59/236 (25%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K+ V+Y++ R+F G+ G G+I K+ +L ELGI+ + L PV+E
Sbjct: 7 KESVVYQIYPRSFMDSNGDGI-----GDLRGIISKLDYLKELGIDVIWLSPVYE------ 55
Query: 313 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 372
+P D GY ++ M+ + W+ E++ +H +++++D+
Sbjct: 56 ----SPNDDN----GYDISDYCKIMNEFGT------MEDWD--ELLHEMHERNMKLMMDL 99
Query: 373 VYNHTNEADDANPYTTSFRGIDNKV--YYM--------------VDGTGQLLNYAGCGNT 416
V NHT +D+ N + S + DNK YY+ +G Y +
Sbjct: 100 VVNHT--SDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDE 157
Query: 417 ------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 460
LN ++ V + + + ++ W +E +DGFR D+ + + + +G P
Sbjct: 158 YYLHLFSKKQPDLNWDNEKVRQDVYEMMKFW-LEKGIDGFRMDVINFISK-EEGLP 211
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 127/332 (38%), Gaps = 91/332 (27%)
Query: 174 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 216
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 217 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 266
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 267 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 315
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 316 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 375
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 376 HTNEADDANPYTTSFRGIDNK--------VYYMVD---GTGQLLNYAGCGNT------LN 418
H A +FR + K +++ D NY L
Sbjct: 244 H------AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETAAVQVPAMPKLR 297
Query: 419 CNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 450
+P V E + D R W +E +DG+R D+A+
Sbjct: 298 TENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 27/127 (21%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K+ V Y++ R+F G+ G G+I+K+ +L+ELG++ V + P++
Sbjct: 7 KEGVAYQIYPRSFMDANGDGI-----GDLRGIIEKLDYLVELGVDIVWICPIY------- 54
Query: 313 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 372
R+P GY ++++ M + +F E++ H G++VILD+
Sbjct: 55 ---RSPNADN----GYDISDYYAIMDEFGTMD--------DFDELLAQAHRRGLKVILDL 99
Query: 373 VYNHTNE 379
V NHT++
Sbjct: 100 VINHTSD 106
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 127/332 (38%), Gaps = 91/332 (27%)
Query: 174 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 216
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 217 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 266
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 267 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 315
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 316 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 375
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 376 HTNEADDANPYTTSFRGIDNK--------VYYMVD---GTGQLLNYAGCGNT------LN 418
H A +FR + K +++ D NY L
Sbjct: 244 H------AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLR 297
Query: 419 CNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 450
+P V E + D R W +E +DG+R D+A+
Sbjct: 298 TENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 127/332 (38%), Gaps = 91/332 (27%)
Query: 174 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 216
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 217 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 266
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 267 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 315
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 316 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 375
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 376 HTNEADDANPYTTSFRGIDNK--------VYYMVD---GTGQLLNYAGCGNT------LN 418
H A +FR + K +++ D NY L
Sbjct: 244 H------AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLR 297
Query: 419 CNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 450
+P V E + D R W +E +DG+R D+A+
Sbjct: 298 TENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 127/332 (38%), Gaps = 91/332 (27%)
Query: 174 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 216
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 217 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 266
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 267 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 315
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 316 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 375
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 376 HTNEADDANPYTTSFRGIDNK--------VYYMVD---GTGQLLNYAGCGNT------LN 418
H A +FR + K +++ D NY L
Sbjct: 244 H------AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLR 297
Query: 419 CNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 450
+P V E + D R W +E +DG+R D+A+
Sbjct: 298 TENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 127/332 (38%), Gaps = 91/332 (27%)
Query: 174 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 216
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 217 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 266
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 267 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 315
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 316 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 375
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 376 HTNEADDANPYTTSFRGIDNK--------VYYMVD---GTGQLLNYAGCGNT------LN 418
H A +FR + K +++ D NY L
Sbjct: 244 H------AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLR 297
Query: 419 CNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 450
+P V E + D R W +E +DG+R D+A+
Sbjct: 298 TENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 54/228 (23%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K+ V Y++ R+F G+ G G+I+K+ +L LGI+A+ + P ++ +
Sbjct: 21 KEAVFYQIYPRSFKDTNDDGI-----GDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDN 75
Query: 313 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 372
GY N+ M Y G ++ +F +V + + +++DV
Sbjct: 76 --------------GYDISNYRQIMKEY-----GTME---DFDSLVAEMKKRNMRLMIDV 113
Query: 373 VYNHTNE---------ADDANPYTTSF---RGIDNK------------VYYMVDGTGQ-- 406
V NHT++ +D NPY + G DN+ + +GQ
Sbjct: 114 VINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYY 173
Query: 407 LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 454
L +A LN ++P V E + LR W ++ V G RFD + +
Sbjct: 174 LHYFARQQPDLNWDNPKVREDLYAMLRFW-LDKGVSGMRFDTVATYSK 220
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 127/332 (38%), Gaps = 91/332 (27%)
Query: 174 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 216
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 217 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 266
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 267 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 315
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 316 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 375
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 376 HTNEADDANPYTTSFRGIDNK--------VYYMVD---GTGQLLNYAGCGNT------LN 418
H A +FR + K +++ D NY L
Sbjct: 244 H------AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLR 297
Query: 419 CNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 450
+P V E + D R W +E +DG+R D+A+
Sbjct: 298 TENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 127/332 (38%), Gaps = 91/332 (27%)
Query: 174 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 216
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 217 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 266
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 267 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 315
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 316 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 375
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 376 HTNEADDANPYTTSFRGIDNK--------VYYMVD---GTGQLLNYAGCGNT------LN 418
H A +FR + K +++ D NY L
Sbjct: 244 H------AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETYAVQVPAMPKLR 297
Query: 419 CNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 450
+P V E + D R W +E +DG+R D+A+
Sbjct: 298 TENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 37/183 (20%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G G+++ + ++ LGINA+ P+F+ + +H +T Y ++ PM
Sbjct: 53 GDLWGIMEDLDYIQNLGINAIYFTPIFQ----------SASNHRYHTHDYYQVD---PM- 98
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN-------EADDANPYTTSFR 391
L + FKE++ A H I+V+LD V+NH++ + + P++
Sbjct: 99 ---------LGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVN 149
Query: 392 GIDNKVYYMVDGTGQL-LNYAG-CGN----TLNCNHPVVMELILDSLRHWVVEYHVDGFR 445
+ + + G+ NY G GN N ++P V E I++ +W +++ +DG+R
Sbjct: 150 WFKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYW-LKFGIDGWR 208
Query: 446 FDL 448
D+
Sbjct: 209 LDV 211
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 95/252 (37%), Gaps = 70/252 (27%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G +G+ +KI HL+ LGINA+ L P+F + GY +++F
Sbjct: 236 GDLIGIKEKIDHLVNLGINAIYLTPIFS---------------SLTYHGYDIVDYFHVAR 280
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTT 388
R L F +++ L I+VILD V++HT+ + + +
Sbjct: 281 R--------LGGDRAFVDLLSELKRFDIKVILDGVFHHTSFFHPYFQDVVRKGENSSFKN 332
Query: 389 SFRGIDNKV------------------YYMVDGTGQLLNYAGCGNT-----LNCNHPVVM 425
+R I V Y + G NY + LN ++P V
Sbjct: 333 FYRIIKFPVVSKEFLQILHSKSSWEEKYKKIKSLG--WNYESFFSVWIMPRLNHDNPKVR 390
Query: 426 ELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEP 485
E I + + W + VDGFR D+A PP + ++A+ +I E
Sbjct: 391 EFIKNVILFWTNK-GVDGFRMDVAH-----------GVPPEVWKEVREALPKEKYLIGEV 438
Query: 486 WDCRGLYLVGKF 497
D L+L KF
Sbjct: 439 MDDARLWLFDKF 450
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 127/332 (38%), Gaps = 91/332 (27%)
Query: 174 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 216
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 217 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 266
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 267 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 315
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 316 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 375
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 376 HTNEADDANPYTTSFRGIDNK--------VYYMVD---GTGQLLNYAGCGNT------LN 418
H A +FR + K +++ D NY L
Sbjct: 244 H------AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLR 297
Query: 419 CNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 450
+P V E + D R W +E +DG+R ++A+
Sbjct: 298 TENPEVKEYLFDVARFW-MEQGIDGWRLNVAN 328
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 127/332 (38%), Gaps = 91/332 (27%)
Query: 174 DLPRSEVLYGYRVDGPRD---------WHQGHRFDSSIVLID------PYAKLVEGRR-- 216
D+ R EVLY R P + RFD L++ Y L+ G +
Sbjct: 33 DVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLTGPQGE 92
Query: 217 --HFGDA--SAKLSKFLGTYEFESLPFDWGDNYKLPNIPE--KDLVIYEMNVRAFT---- 266
+FG+ SA+ SK G +++ + ++ PE K+ VIY++ F
Sbjct: 93 AVYFGETGFSAERSK-AGVFQYAYI-----HRSEVFTTPEWAKEAVIYQIFPERFANGDP 146
Query: 267 -----GDESSGLDPEIR------GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 315
G E D R G G+I ++P+L ELG+ A+ P+F
Sbjct: 147 SNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFA--------- 197
Query: 316 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 375
+P H +T Y I+ G P F+ +V H GI++ILD V+N
Sbjct: 198 -SPSHHKYDTADYLAID--------PQFGDLPT-----FRRLVDEAHRRGIKIILDAVFN 243
Query: 376 HTNEADDANPYTTSFRGIDNK--------VYYMVD---GTGQLLNYAGCGNT------LN 418
H A +FR + K +++ D NY L
Sbjct: 244 H------AGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLR 297
Query: 419 CNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 450
+P V E + D R W +E +DG+R ++A+
Sbjct: 298 TENPEVKEYLFDVARFW-MEQGIDGWRLNVAN 328
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 8 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 51
Query: 313 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 371
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 52 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 99
Query: 372 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 406
VV NH+++ A NPY + D K + + TGQ
Sbjct: 100 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 159
Query: 407 LLNYAGCGN-TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 465
L+Y G LN + P + E + LR W ++ V G RFD + + T G P P
Sbjct: 160 YLHYLGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPE 217
Query: 466 LIRAIAK 472
++ A+
Sbjct: 218 QMKNFAE 224
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 42/177 (23%)
Query: 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGG 345
Q +P+ +G +ELLP+ E +P D +WGY ++P R+
Sbjct: 160 QLVPYAKWMGFTHLELLPINE----------HPFD---GSWGYQPTGLYAPTRRFGTRD- 205
Query: 346 GPLKASWEFKEMVKALHGAGIEVILDVVYNH-------TNEADDANPYTTSFRGIDNKVY 398
+F+ + A H AG+ VILD V H E D N Y S D +
Sbjct: 206 -------DFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHS----DPREG 254
Query: 399 YMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD-LASVLCR 454
Y D + NY V ++ + +W+ + +D R D +AS++ R
Sbjct: 255 YHQDWNTLIYNYG---------RREVSNFLVGNALYWIERFGIDALRVDAVASMIYR 302
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 7 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 50
Query: 313 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 371
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 51 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 98
Query: 372 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 406
VV NH+++ A NPY + D K + + TGQ
Sbjct: 99 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 158
Query: 407 LLNYAGCGN-TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 465
L+Y G LN + P + E + LR W ++ V G RFD + + T G P P
Sbjct: 159 YLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPE 216
Query: 466 LIRAIAK 472
++ A+
Sbjct: 217 QMKNFAE 223
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 7 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 50
Query: 313 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 371
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 51 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 98
Query: 372 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 406
VV NH+++ A NPY + D K + + TGQ
Sbjct: 99 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 158
Query: 407 LLNYAGCGN-TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 465
L+Y G LN + P + E + LR W ++ V G RFD + + T G P P
Sbjct: 159 YLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPE 216
Query: 466 LIRAIAK 472
++ A+
Sbjct: 217 QMKNFAE 223
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 8 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 51
Query: 313 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 371
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 52 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 99
Query: 372 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 406
VV NH+++ A NPY + D K + + TGQ
Sbjct: 100 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 159
Query: 407 LLNYAGCGN-TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 465
L+Y G LN + P + E + LR W ++ V G RFD + + T G P P
Sbjct: 160 YLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPE 217
Query: 466 LIRAIAK 472
++ A+
Sbjct: 218 QMKNFAE 224
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 8 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 51
Query: 313 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 371
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 52 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 99
Query: 372 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 406
VV NH+++ A NPY + D K + + TGQ
Sbjct: 100 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 159
Query: 407 LLNYAGCGN-TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 465
L+Y G LN + P + E + LR W ++ V G RFD + + T G P P
Sbjct: 160 YLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPE 217
Query: 466 LIRAIAK 472
++ A+
Sbjct: 218 QMKNFAE 224
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 31/178 (17%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G++ G+ + + +LG + + LLP+ E VN G SP +
Sbjct: 27 GNFAGVTADLQRIKDLGTDILWLLPINPIGE-------------VNRKG----TLGSPYA 69
Query: 339 RYAAGGGGPLKASW-EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKV 397
G P + +FK + H G++V+LD+VYNHT+ S ++
Sbjct: 70 IKDYRGINPEYGTLADFKALTDRAHELGMKVMLDIVYNHTSP--------DSVLATEHPE 121
Query: 398 YYMVDGTGQLLNYAGCGN---TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL 452
++ D GQL N G + L+ H + + +D+L +W VDG+R D+A ++
Sbjct: 122 WFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQIDTLLYW--SQFVDGYRCDVAPLV 177
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 49/210 (23%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K+L+IYE RA+ G++ +L L + + L +GIN V L+P+
Sbjct: 4 KNLIIYEAFARAYPGEKGK--------KFLSLEKDLERLKGMGINTVWLMPI---HPTGV 52
Query: 313 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 372
+ R+ Y I+ G G +FK+ VK H + V++D+
Sbjct: 53 EGRKGTLGSPYAIRDYYEIDLL-------IGTKG------DFKKFVKRAHELNMYVLMDM 99
Query: 373 VYNHTNEADDANPYTTSFRGIDNKV------YYMVDGTG----QLLNYAGCGNTLNCNHP 422
V NH +DN + +++ D G ++ +++ + + ++
Sbjct: 100 VLNHA--------------AVDNVLVKKHPEWFLRDENGNPTRKVPDWSDVVD-FDYSNG 144
Query: 423 VVMELILDSLRHWVVEYHVDGFRFDLASVL 452
+ E +++ +R+WV E+ VDGFR D+A ++
Sbjct: 145 ELREYMINMMRYWVEEFDVDGFRCDVAGLV 174
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 35 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 78
Query: 313 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 371
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 79 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 126
Query: 372 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 406
VV NH+++ A NPY + D K + + TGQ
Sbjct: 127 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 186
Query: 407 LLNYAGCGN-TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 465
L+Y G LN + P + E + LR W ++ V G RFD + + T G P P
Sbjct: 187 YLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFDTVATYSK-TPGFPDLTPE 244
Query: 466 LIRAIAK 472
++ A+
Sbjct: 245 QMKNFAE 251
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 378
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 378
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 378
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 378
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 378
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 114 GDLKGLKDKIPYFQELGLTYLHLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 161
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 378
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 162 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 193
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLYLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 378
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 409
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 410 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 455
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 456 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 501
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGQLWKGPSEYPNWD 231
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G GL KIP+ ELG+ + L+P+F + P + S+ +P
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLYLMPLF----------KCPEGKSDGGYAVSSYRDVNP-- 157
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 378
A G G L+ E++ ALH AGI ++D ++NHT+
Sbjct: 158 --ALGTIGDLR------EVIAALHEAGISAVVDFIFNHTS 189
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 54/240 (22%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K+ V Y++ R+F G+ G G+I+K+ +L LGI+A+ + P ++ +
Sbjct: 7 KEAVFYQVYPRSFKDTNGDGI-----GDINGIIEKLDYLKALGIDAIWINPHYDSPNTDN 61
Query: 313 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 372
GY ++ M Y G ++ +F ++ + + +++DV
Sbjct: 62 --------------GYDIRDYRKIMKEY-----GTME---DFDRLISEMKKRNMRLMIDV 99
Query: 373 VYNHTNEADD---------ANPYTTSFRGIDNK---------------VYYMVDGTGQ-- 406
V NHT++ ++ NPY + D K + + T Q
Sbjct: 100 VINHTSDQNEWFVKSKSSKDNPYRGYYFWKDAKEGQAPNNYPSFFGGSAWQKDEKTNQYY 159
Query: 407 LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPL 466
L +A LN ++P V + + LR W ++ V G RFD + + D L L
Sbjct: 160 LHYFAKQQPDLNWDNPKVRQDLYAMLRFW-LDKGVSGLRFDTVATYSKIPDFPNLTQQQL 218
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 409
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 410 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 455
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 456 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 501
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 409
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 410 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 455
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 456 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 501
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 409
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 410 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 455
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 456 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 501
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In
Complex With Maltotetraose
Length = 429
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 409
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 410 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 455
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 456 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 501
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGGLWKGPSEYPNWD 231
>pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
Length = 637
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G++ ++ +P + LG +A+ LLPV ++ F++ P YS N
Sbjct: 117 GTFFKMMLLLPFVKSLGADAIYLLPVSRMSDL-FKKGDAPS-------PYSVKNPMELDE 168
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVV 373
RY P K EFK V+A H GI VILD +
Sbjct: 169 RYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFI 203
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 99/247 (40%), Gaps = 57/247 (23%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K V Y++ R+F G+ G + GL +K+ +L LGI+A+ +
Sbjct: 7 KSAVFYQVYPRSFKDTNGDGI-----GDFKGLTEKLDYLKGLGIDAIWI----------- 50
Query: 313 QRRRNPRDHMVNT-WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILD 371
NP NT GY ++ M Y G ++ +F ++ L G+ +++D
Sbjct: 51 ----NPHYASPNTDNGYDISDYREVMKEY-----GTME---DFDRLMAELKKRGMRLMVD 98
Query: 372 VVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG---------------TGQ- 406
VV NH+++ A NPY + D K + + TGQ
Sbjct: 99 VVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEKDPVTGQY 158
Query: 407 LLNYAGCGN-TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 465
L+Y G LN + P + E + LR W ++ V G RF + + T G P P
Sbjct: 159 YLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRFATVATYSK-TPGFPDLTPE 216
Query: 466 LIRAIAK 472
++ A+
Sbjct: 217 QMKNFAE 223
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 38/192 (19%)
Query: 279 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 334
G + G+I KI +L ++G+ A+ + E F M N + GY +F
Sbjct: 49 GDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVM------NDASGSASYHGYWARDFK 102
Query: 335 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 393
P + G L +F+ +V A H GI+VI+D NHT+ A + NP Y + R
Sbjct: 103 KPNPFF-----GTLS---DFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLY 154
Query: 394 DN-----------KVYYMVDGTGQLLN-----YAGCGNTLNCNH--PVVMELILDSLRHW 435
DN +Y+ +G + Y + + NH PV+ + D+++ W
Sbjct: 155 DNGTLLGGYTNDANMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMW 214
Query: 436 VVEYHVDGFRFD 447
++ +DG R D
Sbjct: 215 -IDMGIDGIRMD 225
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 25/121 (20%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G G+++ I HL +LG+ + L P+F + H +T Y +I+ +
Sbjct: 262 GDLAGIMKHIDHLEDLGVETIYLTPIFS----------STSYHRYDTIDYKSIDKY---- 307
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 398
L +F+++V+ LH I+++LD+ +HTN ++ + + R +N Y
Sbjct: 308 ---------LGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNEL--FVKALREGENSPY 356
Query: 399 Y 399
+
Sbjct: 357 W 357
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 409
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 410 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 455
+ G LN HP V + D + +Y GFRF+
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFN-------- 193
Query: 456 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 501
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 59/168 (35%), Gaps = 49/168 (29%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 409
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 410 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 455
+ G LN HP V + D + +Y GFRF
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFG-------- 193
Query: 456 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 501
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 35/193 (18%)
Query: 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 339
S+ L + + + G A++ P+ + E N D ++ W + + P S
Sbjct: 15 SFNTLKHNMKDIHDAGYTAIQTSPINQVKE------GNQGDKSMSNWYW----LYQPTSY 64
Query: 340 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 399
G L EFKEM A GI+VI+D V NHT T + I N+V
Sbjct: 65 QI--GNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHT---------TFDYAAISNEVKS 113
Query: 400 M---VDGTGQLLNYAG----CGNTL------NCNHPVVMELILDSLRHWVVEYHVDGFRF 446
+ G Q+ N++ N+L N + V + L + DGFRF
Sbjct: 114 IPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLER-ALNDGADGFRF 172
Query: 447 DLASVLCRGTDGS 459
D A + DGS
Sbjct: 173 DAAKHIELPDDGS 185
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 35/193 (18%)
Query: 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 339
S+ L + + + G A++ P+ + E N D ++ W + + P S
Sbjct: 18 SFNTLKHNMKDIHDAGYTAIQTSPINQVKE------GNQGDKSMSNWYW----LYQPTSY 67
Query: 340 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 399
G L EFKEM A GI+VI+D V NHT T + I N+V
Sbjct: 68 QI--GNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHT---------TFDYAAISNEVKS 116
Query: 400 M---VDGTGQLLNYAG----CGNTL------NCNHPVVMELILDSLRHWVVEYHVDGFRF 446
+ G Q+ N++ N+L N + V + L + DGFRF
Sbjct: 117 IPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLER-ALNDGADGFRF 175
Query: 447 DLASVLCRGTDGS 459
D A + DGS
Sbjct: 176 DAAKHIELPDDGS 188
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 99/243 (40%), Gaps = 58/243 (23%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K+ V+Y++ ++F G+ G G+I ++ +L +LGI+A+ L PV++ ++
Sbjct: 8 KNAVVYQVYPKSFQDSNGDGI-----GDLQGIISRLDYLEKLGIDAIWLSPVYQSPGVDN 62
Query: 313 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 372
GY ++ + +Y + E++ I++++D+
Sbjct: 63 --------------GYDISDYEAIDPQYGTMA--------DMDELISKAKEHHIKIVMDL 100
Query: 373 VYNHTNEADDANPYTTSFRGIDNKV--YYM----VD----------------------GT 404
V NHT +D + + +G DN+ YY+ VD G
Sbjct: 101 VVNHT--SDQHKWFVEAKKGKDNQYRDYYIWRDPVDEHEPNDLKSAFSGSAWKYDERSGQ 158
Query: 405 GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAP 464
L +A LN + + + I + + W ++ + GFR D+ ++ + D +
Sbjct: 159 YYLHFFADQQPDLNWQNTELRQKIYNMMNFW-LDKGIGGFRMDVIELIGKDPDKNIRENG 217
Query: 465 PLI 467
P++
Sbjct: 218 PML 220
>pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus
Sp. Kr-8104
Length = 422
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 35/193 (18%)
Query: 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 339
S+ L + + + G A++ P+ + E N D + W + + P S
Sbjct: 15 SFNTLKNNMKDIHDAGYTAIQTSPINQVKE------GNKGDKSMGNWYW----LYQPTSY 64
Query: 340 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 399
G L + EFKEM A G++VI+D V NHT T+ + I N++
Sbjct: 65 QI--GNRYLGSEEEFKEMCAAAEEYGVKVIVDAVINHT---------TSDYAAISNEIKS 113
Query: 400 MVD---GTGQLLNYAG----CGNTL------NCNHPVVMELILDSLRHWVVEYHVDGFRF 446
+ + G Q+ N++ N+L N + V + L + DGFR+
Sbjct: 114 ISNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLER-ALNDGADGFRY 172
Query: 447 DLASVLCRGTDGS 459
D A + DG+
Sbjct: 173 DAAKHIELPDDGN 185
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTSFRG---------------IDNK 396
+ K ++ ALHG G++ I D+V NH T E D F G D++
Sbjct: 69 QLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGPHMICRDDR 128
Query: 397 VYYMVDGTGQLLNYAGCGNTLNCNH--PVVMELILDSLRHWVVEYHVDGFRFDLA 449
Y DGTG A G + +H V + +++ L + DG+RFD A
Sbjct: 129 PY--ADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGWRFDFA 181
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 28/125 (22%)
Query: 256 VIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 315
+ Y++ + +F + G G G+ QK+ +L +LG+ A+ L P+
Sbjct: 39 ISYQLLLYSFADSDGDGY-----GDLNGVTQKLDYLNQLGVKALWLSPIHPCXSY----- 88
Query: 316 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 375
H + Y+ +N P L +F +V H GI++ LD V N
Sbjct: 89 -----HGYDVTDYTKVN---PQ----------LGTESDFDRLVTEAHNRGIKIYLDYVXN 130
Query: 376 HTNEA 380
HT A
Sbjct: 131 HTGTA 135
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 28/125 (22%)
Query: 256 VIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRR 315
+ Y++ + +F + G G G+ QK+ +L +LG+ A+ L P+ M +
Sbjct: 39 ISYQLLLYSFADSDGDGY-----GDLNGVTQKLDYLNQLGVKALWLSPIHPC--MSY--- 88
Query: 316 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 375
H + Y+ +N P L +F +V H GI++ LD V N
Sbjct: 89 -----HGYDVTDYTKVN---PQ----------LGTESDFDRLVTEAHNRGIKIYLDYVMN 130
Query: 376 HTNEA 380
HT A
Sbjct: 131 HTGTA 135
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTW--GYSTINFFSPMSRYAAG 343
KIP E GI+A+ L P P M + GY ++F Y G
Sbjct: 32 SKIPEWYEAGISAIWLPP--------------PSKGMSGGYSMGYDPYDYFDLGEYYQKG 77
Query: 344 GGGP-LKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD-DANPYTTSFRGID 394
+ E +++ H GI+VI DVV NH D + NP+ + D
Sbjct: 78 TVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTD 130
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
Query: 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGG 345
QKIP + GI+A+ + P + + +P D F + Y G
Sbjct: 32 QKIPEWYDAGISAIWIPPASKGMGGAYSMGYDPYD-------------FFDLGEYDQKGT 78
Query: 346 GPLK--ASWEFKEMVKALHGAGIEVILDVVYNHTNEAD-DANPYTTSFRGID 394
+ + E M+ H G++VI D+V NH D + NP+ + D
Sbjct: 79 VETRFGSKQELVNMINTAHAYGMKVIADIVINHRAGGDLEWNPFVNDYTWTD 130
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEME-FQRRRNPRDHMVNTWGYSTINFFSPM 337
G G+ QK+P+L +LG+ + L PV D ++ N H GY T +F
Sbjct: 49 GDLEGVRQKLPYLKQLGVTTIWLSPV--LDNLDTLAGTDNTGYH-----GYWTRDFKQIE 101
Query: 338 SRYAAGGGGPLKASW-EFKEMVKALHGAGIEVILDVVYNHT 377
+ +W F +V H GI+VI+D V NH+
Sbjct: 102 EHF---------GNWTTFDTLVNDAHQNGIKVIVDFVPNHS 133
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 76/197 (38%), Gaps = 53/197 (26%)
Query: 279 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 333
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 334 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD------------ 381
F M+ +F+ ++ H GI++++D NHT+ AD
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPADAENGRLYDNGTL 157
Query: 382 ------DANPY-----TTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 430
D N Y + F ++N +Y L + A N N+ + + D
Sbjct: 158 VGGYTNDTNGYFHHNGGSDFSSLENGIY------KNLYDLA----DFNHNNATIDKYFKD 207
Query: 431 SLRHWVVEYHVDGFRFD 447
+++ W ++ VDG R D
Sbjct: 208 AIKLW-LDMGVDGIRVD 223
>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
Length = 414
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 93/239 (38%), Gaps = 51/239 (21%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTSFRG--IDNKVYY---MV----- 401
E K ++ ALHG G++ I D+V NH + D+ F G D ++ + M+
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIACIFEGGTSDGRLDWGPHMICRDDT 129
Query: 402 ---DGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVV----EYHVDGFRFDLASVLCR 454
DGT L A + +H + + + L+ W++ + D +R D A R
Sbjct: 130 KYSDGTANLDTGADFAAAPDIDH--LNDRVQRELKEWLLWLKSDLGFDAWRLDFA----R 183
Query: 455 GTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAE------WNG 508
G SP A I S +AE WD GK PN+D+ A W
Sbjct: 184 GY--SPEMAKVYIDGT------SPSLAVAEVWDNMATGGDGK-PNYDQDAHRQNLVNWVD 234
Query: 509 KYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRK----------PYHSINFIIAHD 557
K + D KGIL + G +L+R+ + P ++ F+ HD
Sbjct: 235 KVGGAASAGMVFDFTTKGILNAAVEG--ELWRLIDPQGKAPGVMGWWPAKAVTFVDNHD 291
>pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant
Length = 414
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH 376
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 448
+ G + LN N+ V + D+++ W ++ +DG R D+
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMDV 230
>pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH 376
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
Inactive Mutant D180a In Complex With Maltoheptaose
pdb|1RP9|A Chain A, Crystal Structure Of Barley Alpha-amylase Isozyme 1 (amy1)
Inactive Mutant D180a In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH 376
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha-
Amylase Isozyme 1
pdb|1P6W|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With The Substrate Analogue, Methyl
4i,4ii,4iii- Tri-Thiomaltotetraoside (Thio-Dp4)
pdb|1RPK|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH 376
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|B Chain B, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|C Chain C, Sugar Tongs Mutant S378p In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH 376
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 408
+F+ ++ H I+VI+D NHT+ A + +P Y + R DN Y D G
Sbjct: 118 DFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFH 177
Query: 409 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+Y G + LN + + + +++ W ++ +DG R D
Sbjct: 178 HYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW-LDMGIDGIRLD 230
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 408
+F+ ++ H I+VI+D NHT+ A + +P Y + R DN Y D G
Sbjct: 118 DFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFH 177
Query: 409 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+Y G + LN + + + +++ W ++ +DG R D
Sbjct: 178 HYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW-LDMGIDGIRLD 230
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 28/182 (15%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
GS+ G+I + ++ +G A+ + P+ E Q ++ D GY + S
Sbjct: 40 GSWQGIIDHLDYIEGMGFTAIWISPITE------QLPQDTADGEAYH-GYWQQKIYDVNS 92
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS-FRGIDNKV 397
+ K + ALH G+ +++DVV +H A + N S F D+
Sbjct: 93 NFGTAD--------NLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSS 144
Query: 398 YY----MVDGTGQLLNYAGC--GNT------LNCNHPVVMELILDSLRHWVVEYHVDGFR 445
Y+ ++ L C G+T L+ V + D + V Y VDG R
Sbjct: 145 YFHPYCLITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLR 204
Query: 446 FD 447
D
Sbjct: 205 ID 206
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 10 IHQPLPALSNSTKLLLFAPTFSHKLCRSFSAASPAHEMGLRLSKKASSGNTPRHFNKTSS 69
+ Q L + ++KL+L PT+ RSF+ AS + R+ A+ TP F K
Sbjct: 226 VQQWLQKGTPASKLILGMPTYG----RSFTLASSSDT---RVGAPATGSGTPGPFTKEGG 278
Query: 70 SVKHTTPSAYNQPTQERVLEEESPRV 95
+ + ++ T++R+ +++ P +
Sbjct: 279 MLAYYEVCSWKGATKQRIQDQKVPYI 304
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 10 IHQPLPALSNSTKLLLFAPTFSHKLCRSFSAASPAHEMGLRLSKKASSGNTPRHFNKTSS 69
+ Q L + ++KL+L PT+ RSF+ AS + R+ A+ TP F K
Sbjct: 226 VQQWLEKGTPASKLILGMPTYG----RSFTLASSSDT---RVGAPATGSGTPGPFTKEGG 278
Query: 70 SVKHTTPSAYNQPTQERVLEEESPRV 95
+ + ++ T++R+ +++ P +
Sbjct: 279 MLAYYEVCSWKGATKQRIQDQKVPYI 304
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 10 IHQPLPALSNSTKLLLFAPTFSHKLCRSFSAASPAHEMGLRLSKKASSGNTPRHFNKTSS 69
+ Q L + ++KL+L PT+ RSF+ AS + R+ A+ TP F K
Sbjct: 226 VQQWLQKGTPASKLILGMPTYG----RSFTLASSSDT---RVGAPATGSGTPGPFTKEGG 278
Query: 70 SVKHTTPSAYNQPTQERVLEEESPRV 95
+ + ++ T++R+ +++ P +
Sbjct: 279 MLAYYEVCSWKGATKQRIQDQKVPYI 304
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 10 IHQPLPALSNSTKLLLFAPTFSHKLCRSFSAASPAHEMGLRLSKKASSGNTPRHFNKTSS 69
+ Q L + ++KL+L PT+ RSF+ AS + R+ A+ TP F K
Sbjct: 226 VQQWLQKGTPASKLILGMPTYG----RSFTLASSSDT---RVGAPATGSGTPGPFTKEGG 278
Query: 70 SVKHTTPSAYNQPTQERVLEEESPRV 95
+ + ++ T++R+ +++ P +
Sbjct: 279 MLAYYEVCSWKGATKQRIQDQKVPYI 304
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSSYEDGIYRNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 279 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 334
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 335 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 393
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 394 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 435
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 436 VVEYHVDGFRFD 447
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 279 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 334
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 335 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 393
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 394 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 435
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 436 VVEYHVDGFRFD 447
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLGDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLWDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 279 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 334
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 335 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 393
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 394 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 435
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 436 VVEYHVDGFRFD 447
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLFDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLLDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 279 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 334
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 335 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 393
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 394 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 435
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 436 VVEYHVDGFRFD 447
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 279 GSYLGLIQKI--PHLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTINFF 334
G + G+I KI +L +GI A+ + E + + + N H GY +F
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYH-----GYWARDFK 106
Query: 335 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGI 393
Y G ++ +FK ++ H I+VI+D NHT+ A +P + + R
Sbjct: 107 KTNPAY-----GTMQ---DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLY 158
Query: 394 DNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDSLRHW 435
DN Y D +Y G + LN N+ V + D+++ W
Sbjct: 159 DNGNLLGGYTNDTQNLFHHYGGTDLSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW 218
Query: 436 VVEYHVDGFRFD 447
++ VDG R D
Sbjct: 219 -LDLGVDGIRVD 229
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKGLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 59/234 (25%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K+ Y++ +F G G G+ K+ ++ ELG +A+ + P ++
Sbjct: 16 KEATFYQIYPASFKDSNDDGW-----GDMKGIASKLEYIKELGADAIWISPFYD------ 64
Query: 313 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 372
+P+D M GY N+ Y + +++ H G++ I D+
Sbjct: 65 ----SPQDDM----GYDIANYEKVWPTYGTNE--------DCFALIEKTHKLGMKFITDL 108
Query: 373 VYNHT---------NEADDANPYTTSF-----RGIDN----------KVYY-----MVDG 403
V NH + + NP F +G D K Y+ D
Sbjct: 109 VINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDE 168
Query: 404 TGQ---LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 454
Q L + LN + + I +S + +++ VDGFR D+ S+ +
Sbjct: 169 KTQEFYLRLFCSTQPDLNWENEDCRKAIYESAVGYWLDHGVDGFRIDVGSLYSK 222
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 59/234 (25%)
Query: 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEF 312
K+ Y++ +F G G G+ K+ ++ ELG +A+ + P ++
Sbjct: 16 KEATFYQIYPASFKDSNDDGW-----GDMKGIASKLEYIKELGADAIWISPFYD------ 64
Query: 313 QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 372
+P+D M GY N+ Y + +++ H G++ I D+
Sbjct: 65 ----SPQDDM----GYDIANYEKVWPTYGTNE--------DCFALIEKTHKLGMKFITDL 108
Query: 373 VYNHT---------NEADDANPYTTSF-----RGIDN----------KVYY-----MVDG 403
V NH + + NP F +G D K Y+ D
Sbjct: 109 VINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDE 168
Query: 404 TGQ---LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 454
Q L + LN + + I +S + +++ VDGFR D+ S+ +
Sbjct: 169 KTQEFYLRLFCSTQPDLNWENEDCRKAIYESAVGYWLDHGVDGFRIDVGSLYSK 222
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 19/100 (19%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT--WGYSTINFFSP 336
G++ G+I K+ ++ +G A+ + PV + P+D GY + +S
Sbjct: 40 GTWQGIIDKLDYIQGMGFTAIWITPV---------TAQLPQDCAYGDAYTGYWQTDIYSL 90
Query: 337 MSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH 376
Y + K + ALH G+ +++DVV NH
Sbjct: 91 NENYGTAD--------DLKALSSALHERGMYLMVDVVANH 122
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 25/128 (19%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 396
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGADFN 137
Query: 397 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 448 LASVLCRG 455
+ + G
Sbjct: 198 ASKHMAPG 205
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASPDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEAD-----DANPYTTSFRGIDNKVYYMVDGTGQL 407
++ + ++A H AG++V DVV++H AD DA S R + Y + +
Sbjct: 83 QYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTK- 141
Query: 408 LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 454
++ G GNT + W YH DG +D + L R
Sbjct: 142 FDFPGRGNTYSSFK-----------WRW---YHFDGVDWDESRKLSR 174
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 10 IHQPLPALSNSTKLLLFAPTFSHKLCRSFSAASPAHEMGLRLSKKASSGNTPRHFNKTSS 69
+ Q L + ++KL+L PT+ RSF+ AS + R+ A+ TP F K
Sbjct: 226 VQQWLQKGTPASKLILGMPTYG----RSFTLASSSD---TRVGAPATGSGTPGPFTKEGG 278
Query: 70 SVKHTTPSAYNQPTQERVLEEESPRV 95
+ + ++ T++R+ +++ P +
Sbjct: 279 MLAYYEVCSWKGATKQRIQDQKVPYI 304
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 408
+FK ++ H I+VI+D NHT+ A +P + + R DN Y D
Sbjct: 117 DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFH 176
Query: 409 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+Y G + LN N+ V + D+++ W ++ VDG R D
Sbjct: 177 HYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW-LDLGVDGIRVD 229
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 20/99 (20%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G+ G+ +++ +L LG+ + L+P+ E E N GY+ ++ +
Sbjct: 108 GTLKGVEERLDYLEGLGVKYLHLMPLLRPREGE------------NDGGYAVQDYRA--V 153
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT 377
R G L A + +AL G GI ++LD+V NH
Sbjct: 154 RPDLGTMDDLSA------LARALRGRGISLVLDLVLNHV 186
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 45/196 (22%)
Query: 279 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 333
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 334 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSF--- 390
F M+ +F+ ++ H GI++++D NHT+ A + + TSF
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPAMETD---TSFAEN 154
Query: 391 -RGIDNKVY---YMVDGTGQLLNYAGCG----------NT-----LNCNHPVVMELILDS 431
R DN Y D G + G NT N N+ + + D+
Sbjct: 155 GRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNTYDLADFNHNNATIDKYFKDA 214
Query: 432 LRHWVVEYHVDGFRFD 447
++ W ++ VDG R D
Sbjct: 215 IKLW-LDMGVDGIRVD 229
>pdb|3OLD|A Chain A, Crystal Structure Of Alpha-Amylase In Complex With
Acarviostatin I03
pdb|3OLE|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Ii03
pdb|3OLG|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iii03
pdb|3OLI|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iv03
Length = 496
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 48/128 (37%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP--------------------------- 385
+F+ ++ A H I+VI+D NHT+ A P
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 386 ------YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 439
++T+ GI +Y + D LN N+ V + D+++ W ++
Sbjct: 177 HNLGTDFSTTENGIYKNLYDLAD--------------LNHNNSTVDVYLKDAIKMW-LDL 221
Query: 440 HVDGFRFD 447
+DG R D
Sbjct: 222 GIDGIRMD 229
>pdb|1XGZ|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase
pdb|1XH0|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Acarbose
pdb|1XH1|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride
pdb|1XH2|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride And Acarbose
pdb|3BAK|A Chain A, N298s Mutant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate
pdb|3BAX|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Azide
pdb|3BAY|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate And Acarbose
Length = 496
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI++ NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIINFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1KBB|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha- Amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|1U2Y|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
D-Gluconhydroximo-1,5-Lactam
pdb|1U30|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
Maltosyl-Alpha (1,4)-D- Gluconhydroximo-1,5-Lactam
pdb|1U33|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors
pdb|1XCW|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XCX|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD0|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD1|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1BSI|A Chain A, Human Pancreatic Alpha-Amylase From Pichia Pastoris,
Glycosylated Protein
pdb|1HNY|A Chain A, The Structure Of Human Pancreatic Alpha-Amylase At 1.8
Angstroms Resolution And Comparisons With Related
Enzymes
pdb|2QMK|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite
pdb|2QV4|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite And
Acarbose
pdb|3BAI|A Chain A, Human Pancreatic Alpha Amylase With Bound Nitrate
pdb|3BAJ|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Nitrate And
Acarbose
pdb|3BAW|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Azide
pdb|3IJ7|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ8|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ9|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|4GQQ|A Chain A, Human Pancreatic Alpha-Amylase With Bound Ethyl Caffeate
pdb|4GQR|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Myricetin
Length = 496
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amylase In Complex
With The Carbohydrate Inhibitor Acarbose
Length = 496
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+ G + LN N+ V + D+++ W ++ +DG R +
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMN 229
>pdb|1KGW|A Chain A, Three Dimensional Structure Analysis Of The R337q Variant
Of Human Pancreatic Alpha-Mylase
Length = 496
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|2CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|3CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
Length = 496
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1KGU|A Chain A, Three Dimensional Structure Analysis Of The R337a Variant
Of Human Pancreatic Alpha-Amylase
Length = 496
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 448 LASVLCRG 455
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1NM9|A Chain A, Crystal Structure Of Recombinant Human Salivary Amylase
Mutant W58a
Length = 496
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|B Chain B, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|C Chain C, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|D Chain D, The Crystal Structure Of Aaleurs-Cp1
Length = 221
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 65 NKTSSSVKHTTPSAYNQPTQERVLEEESPRVSETTLPLKTSQGQAFPIGVSEVENGINFA 124
N S V++ T+ER +EE+ V + G+ P+ + N+
Sbjct: 83 NACYSDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPANGEKIPVWSA------NYV 136
Query: 125 IFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTG 165
++ ++ T +C +P ++ DW+ +LP+ V G
Sbjct: 137 LY-EYGTGAIMC--VPAHDQRDWEFAKKYDLPIKVVVKPEG 174
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20
pdb|3PZ5|B Chain B, The Crystal Structure Of Aaleurs-Cp1-D20
Length = 201
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 65 NKTSSSVKHTTPSAYNQPTQERVLEEESPRVSETTLPLKTSQGQAFPIGVSEVENGINFA 124
N S V++ T+ER +EE+ V + G+ P+ + N+
Sbjct: 63 NACYSDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPANGEKIPVWSA------NYV 116
Query: 125 IFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTG 165
++ ++ T +C +P ++ DW+ +LP+ V G
Sbjct: 117 LY-EYGTGAIMC--VPAHDQRDWEFAKKYDLPIKVVVKPEG 154
>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant
Enzyme F313a
Length = 637
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 118/317 (37%), Gaps = 81/317 (25%)
Query: 210 KLVEGRRHFGDASAKLSKFLGTYEFESLPFD---WGDNYKLPNIPEKDLVIYEMNVRAFT 266
++ R + GD+S + G+Y + P + WG + + LV F
Sbjct: 137 QIFPDRFYNGDSSNDVQT--GSYTYNGTPTEKKAWGSSVYADPGYDNSLV--------FF 186
Query: 267 GDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTW 326
G + +G+D + LG I+K LG N + L P+F + P +H +T
Sbjct: 187 GGDLAGIDQK-----LGYIKKT-----LGANILYLNPIF----------KAPTNHKYDTQ 226
Query: 327 GYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA------ 380
Y ++ P A G L+ ++ +G +ILD V+NHT ++
Sbjct: 227 DYMAVD---P----AFGDNSTLQT--LINDIHSTANGPKGYLILDGVFNHTGDSHPWFDK 277
Query: 381 -----------DDANP---YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNC----NHP 422
++P Y T + D+ ++ + LNY G+ + N
Sbjct: 278 YNNFSSQGAYESQSSPWYNYYTFYTWPDSYASFLGANSLPKLNYGNSGSAVRGVIYNNSN 337
Query: 423 VVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTDGSPLNAPPLIRAI--AKDAILSRC 479
V + L+ Y VDG+R D A V G +GS + + A + S
Sbjct: 338 SVAKTYLNP------PYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVKGVNSNA 391
Query: 480 KIIAE------PWDCRG 490
II E PW +G
Sbjct: 392 AIIGEYWGNANPWTAQG 408
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 45/196 (22%)
Query: 279 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 333
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 334 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSF--- 390
F M+ +F+ ++ H GI++++D NHT+ A + + TSF
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPAMETD---TSFAEN 154
Query: 391 -RGIDNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDS 431
R DN Y D G + G + N N+ + + D+
Sbjct: 155 GRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDA 214
Query: 432 LRHWVVEYHVDGFRFD 447
++ W ++ VDG R D
Sbjct: 215 IKLW-LDMGVDGIRVD 229
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 20/113 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRF 446
+ G + LN N+ V + D+++ W ++ +DG R
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRM 228
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338
G++ G+I K+ ++ +G A+ + PV ++ H GY + +S
Sbjct: 40 GTWQGIIDKLDYIQGMGFTAIWITPVTA--QLPQTTAYGDAYH-----GYWQQDIYSLNE 92
Query: 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH 376
Y + K + ALH G+ +++DVV NH
Sbjct: 93 NYGTAD--------DLKALSSALHERGMYLMVDVVANH 122
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 45/196 (22%)
Query: 279 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 333
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 334 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSF--- 390
F M+ +F+ ++ H GI++++D NHT+ A + + TSF
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPAMETD---TSFAEN 154
Query: 391 -RGIDNKVY---YMVDGTGQLLNYAGCGNT---------------LNCNHPVVMELILDS 431
R DN Y D G + G + N N+ + + D+
Sbjct: 155 GRLYDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDA 214
Query: 432 LRHWVVEYHVDGFRFD 447
++ W ++ VDG R D
Sbjct: 215 IKLW-LDMGVDGIRVD 229
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 354 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY-MVDGTGQLLNYAG 412
F E V LH G ++++ V +N + + PY RG D K++ DG L+
Sbjct: 347 FPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVW 406
Query: 413 CGNTL-------NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV------LCRGTDGS 459
G T+ NC E L H VE+ DG D+ V G +
Sbjct: 407 PGQTVFPDYTNPNCAVWWTKEF---ELFHNQVEF--DGIWIDMNEVSNFVDGSVSGCSTN 461
Query: 460 PLNAPPLIRAIAKDAILSRCKIIA 483
LN PP I + CK +
Sbjct: 462 NLNNPPFTPRILDGYLF--CKTLC 483
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 354 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY-MVDGTGQLLNYAG 412
F E V LH G ++++ V +N + + PY RG D K++ DG L+
Sbjct: 347 FPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVW 406
Query: 413 CGNTL-------NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV------LCRGTDGS 459
G T+ NC E L H VE+ DG D+ V G +
Sbjct: 407 PGQTVFPDYTNPNCAVWWTKEF---ELFHNQVEF--DGIWIDMNEVSNFVDGSVSGCSTN 461
Query: 460 PLNAPPLIRAIAKDAILSRCKIIA 483
LN PP I + CK +
Sbjct: 462 NLNNPPFTPRILDGYLF--CKTLC 483
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
pdb|3O0A|B Chain B, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
Length = 219
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 62 RHFNKTSSSVKHTTPSAYNQPTQERVLEEESPRVSETTLPLKTSQGQAFPIGVSEVENGI 121
R N S V++ T+ER +EE+ V + G+ P+ +
Sbjct: 74 RLGNACYSDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPANGEKIPVWSA------ 127
Query: 122 NFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTG 165
N+ ++ ++ T +C +P ++ DW+ +LP+ V G
Sbjct: 128 NYVLY-EYGTGAIMC--VPAHDQRDWEFAKKYDLPIKVVVKPEG 168
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 27/145 (18%)
Query: 248 PNIPEKDL-------VIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVE 300
P IP++++ +EMN + + PE + L ++ P L E G AV
Sbjct: 114 PQIPDQEVNHTILQAFYWEMNTGEYATEH-----PEEANLWNLLAERAPELAEAGFTAVW 168
Query: 301 LLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLK--ASWEFKEMV 358
L P N ++ GY T + + + + G K E + +
Sbjct: 169 LPPA------------NKGMAGIHDVGYGTYDLWD-LGEFDQKGTVRTKYGTKGELENAI 215
Query: 359 KALHGAGIEVILDVVYNHTNEADDA 383
ALH I+V D V NH AD A
Sbjct: 216 DALHNNDIKVYFDAVLNHRMGADYA 240
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 279 GSYLGLIQKIP--HLLELGINAVELLPVFE--FDEMEFQRRRNPRDHMVNTWGYSTIN-F 333
G + GLI KI + +LG+ A+ + E F + + N H + N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPY 111
Query: 334 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 380
F M+ +F+ ++ H GI++++D NHT+ A
Sbjct: 112 FGTMA--------------DFQNLITTAHAKGIKIVIDFAPNHTSPA 144
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 409
+F+ ++ A H I+VI+ NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIAFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 410 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 447
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1JI1|B Chain B, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1UH3|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseACARBOSE
Complex
Length = 637
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 118/318 (37%), Gaps = 83/318 (26%)
Query: 210 KLVEGRRHFGDASAKLSKFLGTYEFESLPFD---WGDN-YKLPNIPEKDLVIYEMNVRAF 265
++ R + GD+S + G+Y + P + WG + Y P N F
Sbjct: 137 QIFPDRFYNGDSSNDVQT--GSYTYNGTPTEKKAWGSSVYADPGYD---------NSLVF 185
Query: 266 TGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT 325
G + +G+D + LG I+K LG N + L P+F + P +H +T
Sbjct: 186 FGGDLAGIDQK-----LGYIKKT-----LGANILYLNPIF----------KAPTNHKYDT 225
Query: 326 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA----- 380
Y ++ P A G L+ ++ +G +ILD V+NHT ++
Sbjct: 226 QDYMAVD---P----AFGDNSTLQT--LINDIHSTANGPKGYLILDGVFNHTGDSHPWFD 276
Query: 381 ------------DDANP---YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNC----NH 421
++P Y T + D+ ++ + LNY G+ + N
Sbjct: 277 KYNNFSSQGAYESQSSPWYNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNS 336
Query: 422 PVVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTDGSPLNAPPLIRAI--AKDAILSR 478
V + L+ Y VDG+R D A V G +GS + + A + S
Sbjct: 337 NSVAKTYLNP------PYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVKGVNSN 390
Query: 479 CKIIAE------PWDCRG 490
II E PW +G
Sbjct: 391 AAIIGEYWGNANPWTAQG 408
>pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex With The
Proteinaceous Inhibitor Tendamistat
Length = 496
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 401
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 402 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 447
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRLD 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|3T3K|A Chain A, 1.24 A Structure Of Friedreich's Ataxia Frataxin Variant
Q148r
Length = 129
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 17/58 (29%)
Query: 526 GILATRISGSSDLYRVNKRKPYHSI-----------------NFIIAHDGFTLYDLVS 566
G+L ++ G Y +NKR P I N++ +HDG +L++L++
Sbjct: 49 GVLTVKLGGDLGTYVINKRTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGVSLHELLA 106
>pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|B Chain B, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|C Chain C, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|D Chain D, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXT|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|E Chain E, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|B Chain B, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 496
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 401
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 402 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 447
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1PIF|A Chain A, Pig Alpha-amylase
pdb|1PIG|A Chain A, Pig Pancreatic Alpha-Amylase Complexed With The
Oligosaccharide V-1532
Length = 496
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 401
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 402 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 447
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1PPI|A Chain A, The Active Center Of A Mammalian Alpha-Amylase. The
Structure Of The Complex Of A Pancreatic Alpha-Amylase
With A Carbohydrate Inhibitor Refined To 2.2 Angstroms
Resolution
Length = 496
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 401
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 402 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 447
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant
Enzyme W398v
Length = 637
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 118/318 (37%), Gaps = 83/318 (26%)
Query: 210 KLVEGRRHFGDASAKLSKFLGTYEFESLPFD---WGDN-YKLPNIPEKDLVIYEMNVRAF 265
++ R + GD+S + G+Y + P + WG + Y P N F
Sbjct: 137 QIFPDRFYNGDSSNDVQT--GSYTYNGTPTEKKAWGSSVYADPGYD---------NSLVF 185
Query: 266 TGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNT 325
G + +G+D + LG I+K LG N + L P+F + P +H +T
Sbjct: 186 FGGDLAGIDQK-----LGYIKKT-----LGANILYLNPIF----------KAPTNHKYDT 225
Query: 326 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA----- 380
Y ++ P A G L+ ++ +G +ILD V+NHT ++
Sbjct: 226 QDYMAVD---P----AFGDNSTLQT--LINDIHSTANGPKGYLILDGVFNHTGDSHPWFD 276
Query: 381 ------------DDANP---YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNC----NH 421
++P Y T + D+ ++ + LNY G+ + N
Sbjct: 277 KYNNFSSQGAYESQSSPWYNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNS 336
Query: 422 PVVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTDGSPLNAPPLIRAI--AKDAILSR 478
V + L+ Y VDG+R D A V G +GS + + A + S
Sbjct: 337 NSVAKTYLNP------PYSVDGWRLDAAQYVDANGNNGSDVTNHQIWSEFRNAVKGVNSN 390
Query: 479 CKIIAE------PWDCRG 490
II E PW +G
Sbjct: 391 AAIIGEYVGNANPWTAQG 408
>pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 496
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 401
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 402 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 447
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1JFH|A Chain A, Structure Of A Pancreatic Alpha-Amylase Bound To A
Substrate Analogue At 2.03 Angstrom Resolution
Length = 496
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 401
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 402 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 447
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|1OSE|A Chain A, Porcine Pancreatic Alpha-Amylase Complexed With Acarbose
Length = 496
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 401
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 402 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 447
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 65/190 (34%), Gaps = 60/190 (31%)
Query: 284 LIQKIPHLLELGINAVELLPVFE--------------FDEMEFQRRRNPRDHMVNTWGYS 329
L HL ++GI AV + P ++ +D EFQ++ R
Sbjct: 23 LQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVR---------- 72
Query: 330 TINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT- 388
++Y E ++ + +LH ++V DVV NH AD T
Sbjct: 73 --------TKYGTKS--------ELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAV 116
Query: 389 ----SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGF 444
+ R + Y + + G GNT + D HW YH DG
Sbjct: 117 EVNPANRNQETSEEYQIKAWTD-FRFPGRGNTYS-----------DFKWHW---YHFDGA 161
Query: 445 RFDLASVLCR 454
+D + + R
Sbjct: 162 DWDESRKISR 171
>pdb|1KGX|A Chain A, Three Dimensional Structure Analysis Of The R195q Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 353 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 401
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 402 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 447
D G+G + NY +C +++L L D +R + EY V GF+ D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFQLD 197
Query: 448 LA 449
+
Sbjct: 198 AS 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,808,103
Number of Sequences: 62578
Number of extensions: 1175728
Number of successful extensions: 2726
Number of sequences better than 100.0: 188
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 2386
Number of HSP's gapped (non-prelim): 309
length of query: 782
length of database: 14,973,337
effective HSP length: 106
effective length of query: 676
effective length of database: 8,340,069
effective search space: 5637886644
effective search space used: 5637886644
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)