Query 003977
Match_columns 782
No_of_seqs 346 out of 2700
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 15:21:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02100 glgX_debranch glycog 100.0 1E-111 3E-116 986.9 64.1 644 106-781 1-688 (688)
2 PRK03705 glycogen debranching 100.0 9E-111 2E-115 972.4 61.4 632 104-782 4-658 (658)
3 COG1523 PulA Type II secretory 100.0 4E-110 9E-115 954.2 49.6 648 101-781 9-691 (697)
4 PRK14510 putative bifunctional 100.0 1E-98 2E-103 922.1 56.1 600 104-736 8-648 (1221)
5 PLN02877 alpha-amylase/limit d 100.0 1.6E-92 3.5E-97 827.7 50.3 668 50-781 156-968 (970)
6 TIGR02103 pullul_strch alpha-1 100.0 3.1E-91 6.7E-96 820.7 50.0 664 49-781 64-896 (898)
7 TIGR02104 pulA_typeI pullulana 100.0 1.4E-90 3.1E-95 808.9 52.3 561 103-752 6-601 (605)
8 TIGR02102 pullulan_Gpos pullul 100.0 1.3E-89 2.9E-94 820.8 58.6 616 99-781 309-1004(1111)
9 KOG0470 1,4-alpha-glucan branc 100.0 3.5E-80 7.5E-85 686.4 40.6 625 100-779 93-751 (757)
10 PRK12568 glycogen branching en 100.0 1.7E-74 3.6E-79 665.5 52.4 557 109-781 124-728 (730)
11 PRK14706 glycogen branching en 100.0 3E-74 6.5E-79 666.7 50.1 559 110-782 25-622 (639)
12 PRK12313 glycogen branching en 100.0 4.1E-73 8.9E-78 666.1 52.0 559 109-782 24-628 (633)
13 TIGR01515 branching_enzym alph 100.0 4.3E-73 9.2E-78 661.5 48.1 552 110-780 15-613 (613)
14 TIGR02402 trehalose_TreZ malto 100.0 2.2E-73 4.7E-78 653.5 42.2 473 121-731 1-540 (542)
15 PRK05402 glycogen branching en 100.0 2E-72 4.3E-77 667.4 51.1 558 109-781 117-723 (726)
16 PRK14705 glycogen branching en 100.0 1E-71 2.2E-76 670.4 49.8 555 109-782 620-1223(1224)
17 PLN02447 1,4-alpha-glucan-bran 100.0 2.9E-68 6.4E-73 614.6 49.3 588 90-781 85-730 (758)
18 COG0296 GlgB 1,4-alpha-glucan 100.0 9.3E-66 2E-70 579.7 38.8 559 108-781 22-628 (628)
19 PRK10785 maltodextrin glucosid 100.0 2.9E-65 6.4E-70 594.1 42.6 501 116-746 16-580 (598)
20 PLN02960 alpha-amylase 100.0 2.8E-63 6.1E-68 571.2 51.4 511 167-781 326-891 (897)
21 PRK10933 trehalose-6-phosphate 100.0 3.9E-61 8.5E-66 553.2 37.3 438 250-782 6-551 (551)
22 TIGR02403 trehalose_treC alpha 100.0 9.1E-61 2E-65 551.2 36.2 435 251-780 1-542 (543)
23 TIGR02456 treS_nterm trehalose 100.0 4.8E-60 1E-64 546.4 38.8 461 251-780 2-537 (539)
24 PRK09505 malS alpha-amylase; R 100.0 1.4E-55 3.1E-60 511.1 32.4 400 248-726 183-682 (683)
25 PRK09441 cytoplasmic alpha-amy 100.0 2.1E-49 4.5E-54 452.4 34.3 387 279-780 19-479 (479)
26 PLN03244 alpha-amylase; Provis 100.0 5.1E-44 1.1E-48 403.9 42.4 488 166-781 330-866 (872)
27 PLN00196 alpha-amylase; Provis 100.0 3.1E-44 6.8E-49 398.8 27.8 344 278-750 40-420 (428)
28 PF00128 Alpha-amylase: Alpha 100.0 6.2E-45 1.3E-49 393.7 19.5 278 279-637 1-313 (316)
29 PLN02361 alpha-amylase 100.0 1.6E-42 3.4E-47 380.5 31.4 344 279-750 26-394 (401)
30 TIGR03852 sucrose_gtfA sucrose 100.0 2.3E-42 5E-47 382.7 21.9 399 260-732 3-467 (470)
31 COG0366 AmyA Glycosidases [Car 100.0 5.1E-40 1.1E-44 380.0 26.2 404 255-736 1-494 (505)
32 PRK13840 sucrose phosphorylase 100.0 2.5E-39 5.3E-44 360.7 26.8 389 279-735 17-476 (495)
33 KOG0471 Alpha-amylase [Carbohy 100.0 1.7E-39 3.8E-44 372.1 26.3 449 249-780 12-544 (545)
34 PLN02784 alpha-amylase 100.0 1.1E-37 2.4E-42 358.0 30.7 303 251-678 495-835 (894)
35 TIGR02455 TreS_stutzeri trehal 100.0 1E-34 2.2E-39 323.6 33.9 483 239-781 33-681 (688)
36 TIGR02401 trehalose_TreY malto 100.0 2.4E-31 5.2E-36 309.5 31.5 177 278-484 12-282 (825)
37 PRK14511 maltooligosyl trehalo 100.0 1.2E-26 2.5E-31 271.4 29.9 88 279-387 17-104 (879)
38 smart00642 Aamy Alpha-amylase 99.9 2.3E-23 4.9E-28 203.7 9.5 97 259-379 1-97 (166)
39 PF14872 GHL5: Hypothetical gl 99.8 1.6E-18 3.5E-23 190.4 33.3 288 109-451 25-392 (811)
40 KOG2212 Alpha-amylase [Carbohy 99.8 2.5E-19 5.3E-24 183.5 22.5 384 280-752 38-466 (504)
41 cd02852 Isoamylase_N_term Isoa 99.8 7.2E-18 1.5E-22 156.3 12.8 102 113-220 1-102 (119)
42 cd02856 Glycogen_debranching_e 99.7 4.2E-17 9E-22 147.1 12.2 97 111-219 1-97 (103)
43 PRK14507 putative bifunctional 99.6 2.3E-16 5E-21 195.9 10.1 100 254-387 743-842 (1693)
44 cd02860 Pullulanase_N_term Pul 99.6 4.9E-15 1.1E-19 132.9 10.4 90 112-218 1-90 (100)
45 COG3280 TreY Maltooligosyl tre 99.5 1E-13 2.2E-18 155.7 16.6 88 279-387 16-103 (889)
46 PF02922 CBM_48: Carbohydrate- 99.5 1.2E-13 2.5E-18 120.1 8.5 81 111-209 1-85 (85)
47 TIGR01531 glyc_debranch glycog 99.4 5.6E-13 1.2E-17 161.1 8.6 89 279-388 129-218 (1464)
48 cd02853 MTHase_N_term Maltooli 99.3 1E-11 2.2E-16 107.9 8.4 71 113-212 1-72 (85)
49 cd02854 Glycogen_branching_enz 99.2 2.1E-11 4.6E-16 108.5 8.3 80 117-215 3-88 (99)
50 cd02855 Glycogen_branching_enz 99.0 2.2E-09 4.7E-14 97.2 10.3 86 111-215 9-98 (106)
51 cd02858 Esterase_N_term Estera 98.8 1.1E-08 2.5E-13 88.6 8.1 68 118-212 5-73 (85)
52 PF11941 DUF3459: Domain of un 98.8 1E-08 2.2E-13 89.8 7.8 89 667-779 1-89 (89)
53 PF14701 hDGE_amylase: glucano 98.6 1.3E-07 2.9E-12 103.9 10.2 108 251-390 4-112 (423)
54 PRK05402 glycogen branching en 98.6 9.6E-08 2.1E-12 114.9 8.0 80 110-212 19-98 (726)
55 PF14871 GHL6: Hypothetical gl 98.5 5.2E-07 1.1E-11 84.6 10.7 125 286-447 4-131 (132)
56 PF02638 DUF187: Glycosyl hydr 98.5 5.5E-07 1.2E-11 97.4 11.7 142 280-447 17-161 (311)
57 PF11852 DUF3372: Domain of un 98.4 9.1E-07 2E-11 85.3 7.4 114 663-781 42-166 (168)
58 cd02688 E_set E or "early" set 98.2 5.6E-06 1.2E-10 70.8 8.7 59 119-190 4-63 (83)
59 cd02861 E_set_proteins_like E 98.2 4.1E-06 8.9E-11 72.1 7.6 67 120-212 3-69 (82)
60 PF02806 Alpha-amylase_C: Alph 98.0 7.4E-06 1.6E-10 72.6 4.6 81 701-782 6-94 (95)
61 COG1649 Uncharacterized protei 97.8 7.4E-05 1.6E-09 82.3 10.0 143 279-448 61-207 (418)
62 PF02324 Glyco_hydro_70: Glyco 97.6 0.0022 4.7E-08 73.4 17.4 279 414-750 143-481 (809)
63 PF02324 Glyco_hydro_70: Glyco 97.6 7.3E-05 1.6E-09 84.9 5.5 109 252-379 562-674 (809)
64 cd06597 GH31_transferase_CtsY 97.5 0.00062 1.3E-08 74.8 11.6 95 353-450 86-187 (340)
65 cd06592 GH31_glucosidase_KIAA1 97.5 0.00069 1.5E-08 73.3 11.2 132 279-450 27-165 (303)
66 cd06593 GH31_xylosidase_YicI Y 97.3 0.0014 3E-08 71.2 10.7 137 279-454 21-163 (308)
67 PF10438 Cyc-maltodext_C: Cycl 97.1 0.00031 6.7E-09 59.4 2.6 67 702-780 7-77 (78)
68 cd06599 GH31_glycosidase_Aec37 96.9 0.0044 9.5E-08 67.5 10.1 90 353-449 74-167 (317)
69 KOG3625 Alpha amylase [Carbohy 96.9 0.00082 1.8E-08 78.2 4.3 91 279-388 139-230 (1521)
70 cd06602 GH31_MGAM_SI_GAA This 96.8 0.0068 1.5E-07 66.7 10.5 94 355-450 69-165 (339)
71 cd06600 GH31_MGAM-like This fa 96.8 0.0076 1.6E-07 65.7 10.5 134 279-450 21-160 (317)
72 cd06594 GH31_glucosidase_YihQ 96.8 0.0032 7E-08 68.5 7.5 142 279-451 20-167 (317)
73 PF02065 Melibiase: Melibiase; 96.7 0.017 3.8E-07 64.4 12.6 141 280-453 56-196 (394)
74 PF13199 Glyco_hydro_66: Glyco 96.7 0.014 3.1E-07 67.5 12.1 170 280-482 116-305 (559)
75 PRK14507 putative bifunctional 96.5 0.02 4.3E-07 73.6 13.0 119 617-750 1503-1665(1693)
76 cd06591 GH31_xylosidase_XylS X 96.5 0.0063 1.4E-07 66.4 7.4 91 353-450 67-159 (319)
77 cd06604 GH31_glucosidase_II_Ma 96.4 0.013 2.9E-07 64.5 9.8 132 280-450 22-159 (339)
78 PF01055 Glyco_hydro_31: Glyco 96.3 0.0098 2.1E-07 68.0 7.7 97 352-452 83-182 (441)
79 PF08533 Glyco_hydro_42C: Beta 96.2 0.011 2.3E-07 47.2 5.6 54 708-780 4-57 (58)
80 PRK14508 4-alpha-glucanotransf 96.2 0.18 3.9E-06 58.2 17.4 24 352-375 198-221 (497)
81 PF13200 DUF4015: Putative gly 96.2 0.048 1.1E-06 58.8 11.9 138 279-452 10-149 (316)
82 PLN02635 disproportionating en 96.1 0.034 7.3E-07 64.3 11.0 23 352-374 224-246 (538)
83 COG1501 Alpha-glucosidases, fa 96.0 0.54 1.2E-05 57.0 21.2 92 353-452 322-417 (772)
84 cd02859 AMPKbeta_GBD_like AMP- 95.6 0.059 1.3E-06 45.9 7.6 54 120-188 3-56 (79)
85 PRK14582 pgaB outer membrane N 95.5 0.11 2.4E-06 61.6 12.2 139 280-452 332-470 (671)
86 smart00632 Aamy_C Aamy_C domai 95.5 0.05 1.1E-06 46.6 6.9 70 702-779 6-76 (81)
87 PRK10658 putative alpha-glucos 95.2 0.04 8.7E-07 65.8 7.4 93 353-453 326-421 (665)
88 COG3280 TreY Maltooligosyl tre 94.9 0.039 8.4E-07 64.1 5.7 96 616-725 714-826 (889)
89 cd06598 GH31_transferase_CtsZ 94.8 0.08 1.7E-06 57.7 7.8 89 353-449 71-163 (317)
90 cd06603 GH31_GANC_GANAB_alpha 94.7 0.13 2.8E-06 56.7 9.3 133 279-449 21-161 (339)
91 PRK10426 alpha-glucosidase; Pr 94.7 0.065 1.4E-06 63.8 7.4 96 352-454 269-367 (635)
92 PLN02950 4-alpha-glucanotransf 94.4 0.67 1.5E-05 57.2 15.1 173 120-343 154-335 (909)
93 PRK11052 malQ 4-alpha-glucanot 94.2 0.16 3.6E-06 60.7 9.1 181 351-565 354-558 (695)
94 TIGR00217 malQ 4-alpha-glucano 93.7 0.36 7.9E-06 55.9 10.6 24 352-375 212-235 (513)
95 cd06542 GH18_EndoS-like Endo-b 93.2 0.26 5.7E-06 51.8 7.7 62 352-448 51-112 (255)
96 cd06564 GH20_DspB_LnbB-like Gl 93.0 0.56 1.2E-05 51.4 10.1 73 352-440 82-155 (326)
97 cd06595 GH31_xylosidase_XylS-l 92.9 0.17 3.7E-06 54.5 5.8 84 352-448 74-157 (292)
98 PLN02763 hydrolase, hydrolyzin 92.3 0.35 7.6E-06 59.5 8.0 131 280-449 199-335 (978)
99 PF02446 Glyco_hydro_77: 4-alp 92.1 0.23 5E-06 57.5 6.0 24 352-375 192-215 (496)
100 PRK14510 putative bifunctional 91.9 5.2 0.00011 51.4 18.0 29 279-307 743-771 (1221)
101 PF05913 DUF871: Bacterial pro 91.7 0.17 3.6E-06 55.8 4.0 61 279-376 11-71 (357)
102 PLN03244 alpha-amylase; Provis 90.9 0.15 3.2E-06 60.6 2.7 74 93-174 104-180 (872)
103 PF14488 DUF4434: Domain of un 90.8 0.81 1.8E-05 44.9 7.4 71 281-376 19-89 (166)
104 PF00150 Cellulase: Cellulase 89.8 0.34 7.4E-06 51.3 4.2 63 283-374 22-84 (281)
105 cd02875 GH18_chitobiase Chitob 89.6 0.68 1.5E-05 51.4 6.5 55 355-449 67-121 (358)
106 COG1640 MalQ 4-alpha-glucanotr 89.4 3.9 8.4E-05 47.1 12.3 25 352-376 210-234 (520)
107 PF02449 Glyco_hydro_42: Beta- 89.3 1.8 3.9E-05 48.3 9.7 123 282-448 10-136 (374)
108 cd02871 GH18_chitinase_D-like 89.1 1.3 2.8E-05 48.1 8.2 60 352-449 60-119 (312)
109 cd06565 GH20_GcnA-like Glycosy 88.7 2.6 5.6E-05 45.6 10.0 113 280-440 15-131 (301)
110 TIGR01531 glyc_debranch glycog 88.7 15 0.00032 47.2 17.4 58 420-488 487-545 (1464)
111 cd06601 GH31_lyase_GLase GLase 88.0 1.3 2.8E-05 48.6 7.1 68 353-449 65-132 (332)
112 COG3589 Uncharacterized conser 87.8 0.59 1.3E-05 50.0 4.2 25 352-376 49-73 (360)
113 KOG1065 Maltase glucoamylase a 87.7 3 6.6E-05 49.9 10.3 133 279-448 308-446 (805)
114 cd06545 GH18_3CO4_chitinase Th 87.5 1.5 3.3E-05 46.0 7.2 62 352-448 46-107 (253)
115 cd06589 GH31 The enzymes of gl 87.5 2.2 4.8E-05 45.2 8.5 94 279-451 21-117 (265)
116 cd06563 GH20_chitobiase-like T 87.2 3.7 8E-05 45.5 10.4 79 352-440 86-165 (357)
117 cd06568 GH20_SpHex_like A subg 87.1 3.7 8E-05 45.0 10.1 124 280-439 16-153 (329)
118 cd02742 GH20_hexosaminidase Be 87.1 3.5 7.5E-05 44.7 9.9 122 279-439 13-147 (303)
119 cd06562 GH20_HexA_HexB-like Be 86.4 3.7 8E-05 45.4 9.7 125 280-440 16-149 (348)
120 PF00728 Glyco_hydro_20: Glyco 86.0 0.96 2.1E-05 49.9 4.9 130 279-446 15-162 (351)
121 cd02857 CD_pullulan_degrading_ 85.7 3.3 7.1E-05 37.5 7.5 67 111-188 12-81 (116)
122 PF07745 Glyco_hydro_53: Glyco 85.5 5.4 0.00012 43.6 10.2 56 286-377 28-83 (332)
123 PRK12568 glycogen branching en 84.2 2.7 5.9E-05 50.6 7.8 75 111-211 29-104 (730)
124 cd06570 GH20_chitobiase-like_1 82.3 12 0.00025 40.8 11.1 123 280-439 16-146 (311)
125 PF02446 Glyco_hydro_77: 4-alp 79.2 2.6 5.7E-05 48.9 5.2 64 262-343 3-67 (496)
126 TIGR03849 arch_ComA phosphosul 79.1 4.4 9.4E-05 41.9 6.1 55 277-372 59-120 (237)
127 PF14883 GHL13: Hypothetical g 77.9 25 0.00054 37.4 11.3 121 286-447 21-143 (294)
128 TIGR03356 BGL beta-galactosida 74.8 14 0.0003 42.1 9.4 99 279-440 51-150 (427)
129 TIGR01370 cysRS possible cyste 74.5 9.8 0.00021 41.3 7.6 66 416-482 137-210 (315)
130 PF01120 Alpha_L_fucos: Alpha- 73.7 8.4 0.00018 42.5 7.1 120 287-450 96-216 (346)
131 PF03198 Glyco_hydro_72: Gluca 72.6 4.1 8.8E-05 43.7 4.0 51 284-378 55-105 (314)
132 PF01301 Glyco_hydro_35: Glyco 72.0 3.9 8.4E-05 44.6 3.9 60 284-374 26-85 (319)
133 PF02679 ComA: (2R)-phospho-3- 71.4 6.2 0.00013 41.1 4.9 55 278-373 73-134 (244)
134 COG1523 PulA Type II secretory 70.7 15 0.00034 44.0 8.7 61 122-188 70-136 (697)
135 cd02874 GH18_CFLE_spore_hydrol 69.4 8.3 0.00018 41.8 5.8 66 354-449 47-112 (313)
136 PLN03236 4-alpha-glucanotransf 68.5 7.4 0.00016 46.9 5.4 70 260-343 66-135 (745)
137 cd00598 GH18_chitinase-like Th 65.8 23 0.0005 35.6 7.8 63 352-449 49-113 (210)
138 smart00812 Alpha_L_fucos Alpha 65.0 53 0.0011 36.8 11.1 114 287-449 86-202 (384)
139 PRK14508 4-alpha-glucanotransf 64.9 11 0.00023 43.9 5.7 50 279-342 23-73 (497)
140 cd06569 GH20_Sm-chitobiase-lik 64.6 30 0.00065 39.6 9.2 86 351-437 96-191 (445)
141 PRK14705 glycogen branching en 63.5 19 0.00041 46.1 7.9 77 111-211 522-600 (1224)
142 PF13204 DUF4038: Protein of u 62.8 16 0.00035 39.2 6.3 78 280-376 28-110 (289)
143 cd04823 ALAD_PBGS_aspartate_ri 61.2 68 0.0015 34.6 10.3 53 254-306 24-78 (320)
144 PF10566 Glyco_hydro_97: Glyco 61.1 71 0.0015 34.0 10.5 65 278-372 28-93 (273)
145 cd04824 eu_ALAD_PBGS_cysteine_ 60.9 76 0.0017 34.2 10.6 99 254-379 21-121 (320)
146 cd02877 GH18_hevamine_XipI_cla 60.3 24 0.00052 37.7 7.0 21 352-372 59-79 (280)
147 PLN03059 beta-galactosidase; P 59.7 14 0.0003 45.1 5.4 57 285-372 62-118 (840)
148 PTZ00445 p36-lilke protein; Pr 59.7 16 0.00036 37.1 5.2 69 281-370 27-96 (219)
149 cd05815 CBM20_DPE2_repeat1 Dis 57.3 53 0.0011 29.0 7.7 63 121-187 2-66 (101)
150 PRK05628 coproporphyrinogen II 57.0 26 0.00056 39.1 6.9 62 286-378 109-171 (375)
151 PRK15452 putative protease; Pr 55.7 74 0.0016 36.4 10.3 19 352-370 46-64 (443)
152 TIGR01211 ELP3 histone acetylt 55.7 51 0.0011 38.5 9.1 61 286-377 207-267 (522)
153 TIGR00539 hemN_rel putative ox 55.4 39 0.00083 37.5 7.9 62 286-378 101-163 (360)
154 cd06546 GH18_CTS3_chitinase GH 55.3 41 0.00088 35.5 7.6 47 420-472 92-138 (256)
155 PRK09283 delta-aminolevulinic 54.9 92 0.002 33.7 10.0 51 254-304 29-81 (323)
156 PRK09852 cryptic 6-phospho-bet 54.9 52 0.0011 38.0 9.0 66 279-373 68-133 (474)
157 cd06547 GH85_ENGase Endo-beta- 54.3 10 0.00022 41.7 3.0 66 356-452 50-115 (339)
158 PRK13384 delta-aminolevulinic 54.2 1E+02 0.0022 33.3 10.1 53 254-306 31-85 (322)
159 PF02903 Alpha-amylase_N: Alph 53.4 33 0.0007 31.5 5.8 67 117-188 19-89 (120)
160 PF00490 ALAD: Delta-aminolevu 52.7 44 0.00095 36.1 7.2 137 254-445 27-165 (324)
161 PRK09058 coproporphyrinogen II 52.6 69 0.0015 36.7 9.6 62 286-378 164-226 (449)
162 TIGR03234 OH-pyruv-isom hydrox 52.2 1.1E+02 0.0023 31.8 10.3 85 283-370 15-102 (254)
163 PRK11052 malQ 4-alpha-glucanot 50.8 30 0.00064 41.9 6.3 60 269-343 157-216 (695)
164 PRK10076 pyruvate formate lyas 50.5 55 0.0012 33.5 7.4 66 283-370 146-211 (213)
165 COG0113 HemB Delta-aminolevuli 50.4 1.3E+02 0.0027 32.4 10.0 54 254-307 31-86 (330)
166 cd00384 ALAD_PBGS Porphobilino 50.2 1.4E+02 0.003 32.2 10.4 53 254-306 21-75 (314)
167 COG2730 BglC Endoglucanase [Ca 48.3 28 0.0006 39.4 5.4 61 285-372 76-136 (407)
168 COG3867 Arabinogalactan endo-1 48.0 42 0.0009 35.7 6.0 24 352-375 104-127 (403)
169 PRK01060 endonuclease IV; Prov 47.8 1.1E+02 0.0023 32.4 9.6 51 283-368 13-63 (281)
170 PRK08446 coproporphyrinogen II 47.6 52 0.0011 36.3 7.3 62 286-378 99-161 (350)
171 PF09154 DUF1939: Domain of un 47.5 17 0.00037 28.9 2.5 56 719-779 1-56 (57)
172 cd05816 CBM20_DPE2_repeat2 Dis 47.2 69 0.0015 28.2 6.7 61 121-189 2-67 (99)
173 PRK15014 6-phospho-beta-glucos 46.7 84 0.0018 36.4 9.0 66 279-373 66-131 (477)
174 PLN02635 disproportionating en 46.1 86 0.0019 36.8 8.9 66 260-342 34-100 (538)
175 cd02803 OYE_like_FMN_family Ol 46.0 66 0.0014 35.0 7.8 148 324-482 45-212 (327)
176 PF13380 CoA_binding_2: CoA bi 45.9 40 0.00087 30.8 5.1 21 283-303 67-87 (116)
177 PRK08207 coproporphyrinogen II 44.1 63 0.0014 37.5 7.5 62 286-378 270-332 (488)
178 TIGR00433 bioB biotin syntheta 44.0 75 0.0016 33.9 7.7 60 285-376 123-182 (296)
179 COG1306 Uncharacterized conser 42.7 1.1E+02 0.0025 32.6 8.2 139 282-452 77-221 (400)
180 PLN02950 4-alpha-glucanotransf 42.2 41 0.00089 42.0 5.9 24 352-375 461-484 (909)
181 PRK08208 coproporphyrinogen II 41.4 61 0.0013 36.9 6.8 62 286-378 142-204 (430)
182 KOG0496 Beta-galactosidase [Ca 41.3 46 0.00099 39.2 5.7 62 286-378 53-114 (649)
183 PRK09997 hydroxypyruvate isome 41.2 49 0.0011 34.6 5.6 84 284-370 17-103 (258)
184 PRK13210 putative L-xylulose 5 41.2 2E+02 0.0044 30.2 10.5 54 283-370 17-70 (284)
185 cd00019 AP2Ec AP endonuclease 40.2 2.1E+02 0.0045 30.2 10.4 22 282-303 10-31 (279)
186 smart00518 AP2Ec AP endonuclea 39.9 2E+02 0.0044 30.1 10.2 52 284-370 12-63 (273)
187 PRK09856 fructoselysine 3-epim 39.5 2.8E+02 0.0061 29.0 11.2 51 283-369 14-64 (275)
188 cd02931 ER_like_FMN Enoate red 39.2 1.8E+02 0.004 32.5 10.0 28 350-379 81-109 (382)
189 PRK05904 coproporphyrinogen II 38.7 1.4E+02 0.0031 33.0 9.0 62 286-378 104-166 (353)
190 PRK06294 coproporphyrinogen II 38.6 1E+02 0.0022 34.3 8.0 62 286-378 104-166 (370)
191 cd02932 OYE_YqiM_FMN Old yello 37.9 2.8E+02 0.0061 30.3 11.2 115 349-482 74-225 (336)
192 PLN02808 alpha-galactosidase 37.8 1.4E+02 0.0031 33.4 8.7 71 703-781 307-383 (386)
193 TIGR01233 lacG 6-phospho-beta- 37.8 1.4E+02 0.0031 34.3 9.1 101 279-442 50-150 (467)
194 cd05808 CBM20_alpha_amylase Al 37.6 86 0.0019 27.1 5.8 61 121-188 3-65 (95)
195 cd04733 OYE_like_2_FMN Old yel 37.6 2.1E+02 0.0047 31.3 10.2 116 351-482 81-220 (338)
196 PRK09593 arb 6-phospho-beta-gl 37.0 1.8E+02 0.0039 33.7 9.8 66 279-373 70-135 (478)
197 cd06543 GH18_PF-ChiA-like PF-C 36.7 1E+02 0.0022 33.2 7.2 62 352-451 54-115 (294)
198 COG0826 Collagenase and relate 36.2 1.9E+02 0.0041 32.0 9.3 21 352-372 49-69 (347)
199 PRK05660 HemN family oxidoredu 36.2 92 0.002 34.8 7.1 62 286-378 108-170 (378)
200 cd05817 CBM20_DSP Dual-specifi 36.2 1E+02 0.0022 27.2 6.1 61 121-188 2-64 (100)
201 cd02929 TMADH_HD_FMN Trimethyl 35.9 2.6E+02 0.0056 31.2 10.6 28 350-379 81-108 (370)
202 PRK07094 biotin synthase; Prov 35.3 79 0.0017 34.3 6.3 62 286-378 130-191 (323)
203 COG1242 Predicted Fe-S oxidore 35.3 1E+02 0.0023 32.6 6.6 56 352-452 168-223 (312)
204 PRK09249 coproporphyrinogen II 35.2 1E+02 0.0022 35.4 7.4 62 286-378 152-214 (453)
205 PF00686 CBM_20: Starch bindin 35.1 93 0.002 27.1 5.6 65 120-189 3-71 (96)
206 KOG2499 Beta-N-acetylhexosamin 34.7 1.4E+02 0.0029 34.2 7.8 28 352-379 250-278 (542)
207 PF07071 DUF1341: Protein of u 34.6 67 0.0015 32.3 4.9 42 286-368 139-180 (218)
208 PF00724 Oxidored_FMN: NADH:fl 34.5 1.4E+02 0.0031 32.7 8.2 29 349-379 77-105 (341)
209 PRK13511 6-phospho-beta-galact 34.2 1.7E+02 0.0037 33.8 9.0 65 279-373 51-115 (469)
210 PF08821 CGGC: CGGC domain; I 33.7 1.2E+02 0.0025 27.5 6.0 27 281-307 51-77 (107)
211 COG3669 Alpha-L-fucosidase [Ca 33.6 5.7E+02 0.012 28.7 12.1 98 252-388 21-130 (430)
212 PRK13347 coproporphyrinogen II 33.6 1.1E+02 0.0023 35.2 7.3 62 286-378 153-215 (453)
213 PRK09589 celA 6-phospho-beta-g 33.5 1.7E+02 0.0038 33.8 8.9 68 279-377 64-131 (476)
214 PLN03236 4-alpha-glucanotransf 33.5 80 0.0017 38.4 6.3 24 352-375 274-297 (745)
215 COG3345 GalA Alpha-galactosida 33.4 94 0.002 36.0 6.3 136 280-448 307-442 (687)
216 cd04747 OYE_like_5_FMN Old yel 33.0 2.9E+02 0.0062 30.8 10.2 28 350-379 76-103 (361)
217 PRK08599 coproporphyrinogen II 31.4 1.1E+02 0.0024 34.0 6.8 62 286-378 101-163 (377)
218 cd06232 Peptidase_M14-like_5 P 31.2 5.2E+02 0.011 26.9 10.7 113 280-407 54-170 (240)
219 PRK09989 hypothetical protein; 30.3 88 0.0019 32.7 5.4 80 283-369 16-102 (258)
220 cd05467 CBM20 The family 20 ca 30.0 1.8E+02 0.004 24.9 6.6 61 121-188 2-67 (96)
221 TIGR00538 hemN oxygen-independ 29.9 1.3E+02 0.0027 34.6 7.0 62 286-378 152-214 (455)
222 PF09260 DUF1966: Domain of un 29.4 1.2E+02 0.0027 26.5 5.2 47 703-750 5-57 (91)
223 cd05814 CBM20_Prei4 Prei4, N-t 28.9 1.5E+02 0.0032 27.1 6.1 64 120-188 2-68 (120)
224 PF07555 NAGidase: beta-N-acet 28.8 1.5E+02 0.0033 32.1 6.9 98 280-446 13-110 (306)
225 PF01212 Beta_elim_lyase: Beta 28.5 46 0.001 35.7 3.0 23 351-373 144-166 (290)
226 cd06548 GH18_chitinase The GH1 28.3 65 0.0014 35.1 4.1 29 420-448 105-133 (322)
227 PRK07379 coproporphyrinogen II 28.2 1.4E+02 0.0029 33.8 6.8 62 286-378 116-178 (400)
228 PRK09057 coproporphyrinogen II 28.1 1.5E+02 0.0032 33.2 7.0 62 286-378 105-166 (380)
229 PRK05967 cystathionine beta-ly 28.0 59 0.0013 36.6 3.8 30 347-376 161-190 (395)
230 PRK09028 cystathionine beta-ly 27.9 60 0.0013 36.5 3.8 30 346-375 157-186 (394)
231 PLN02849 beta-glucosidase 27.8 2.1E+02 0.0045 33.5 8.2 65 279-373 76-140 (503)
232 PLN02803 beta-amylase 27.8 4E+02 0.0086 31.1 10.1 86 253-380 84-172 (548)
233 KOG0259 Tyrosine aminotransfer 27.7 52 0.0011 36.3 3.1 29 352-380 219-247 (447)
234 PF01791 DeoC: DeoC/LacD famil 27.6 52 0.0011 34.0 3.1 58 285-376 79-136 (236)
235 TIGR03471 HpnJ hopanoid biosyn 27.0 1.4E+02 0.003 34.5 6.7 25 352-376 323-347 (472)
236 PRK06582 coproporphyrinogen II 26.8 3E+02 0.0065 30.9 9.2 62 286-378 112-173 (390)
237 PF07894 DUF1669: Protein of u 26.6 45 0.00097 35.5 2.3 21 352-373 137-157 (284)
238 PRK05799 coproporphyrinogen II 25.4 1.9E+02 0.004 32.2 7.2 62 286-378 100-162 (374)
239 smart00636 Glyco_18 Glycosyl h 25.4 77 0.0017 34.5 4.1 29 420-448 87-115 (334)
240 cd02876 GH18_SI-CLP Stabilin-1 25.4 73 0.0016 34.6 3.9 29 420-448 88-116 (318)
241 TIGR01210 conserved hypothetic 25.1 85 0.0018 34.1 4.3 60 286-376 118-179 (313)
242 cd02879 GH18_plant_chitinase_c 24.9 73 0.0016 34.3 3.7 28 420-447 88-115 (299)
243 PLN02814 beta-glucosidase 24.5 2.7E+02 0.0058 32.5 8.4 65 279-373 74-138 (504)
244 PLN02998 beta-glucosidase 23.8 2.3E+02 0.005 33.0 7.7 65 279-373 79-143 (497)
245 TIGR01212 radical SAM protein, 23.8 2.2E+02 0.0047 30.8 7.1 25 352-376 163-187 (302)
246 PF15640 Tox-MPTase4: Metallop 23.7 76 0.0017 29.3 2.9 23 350-372 20-42 (132)
247 PRK05939 hypothetical protein; 23.6 78 0.0017 35.6 3.8 28 347-374 143-170 (397)
248 cd06549 GH18_trifunctional GH1 23.4 81 0.0017 34.0 3.7 31 419-449 83-113 (298)
249 COG0626 MetC Cystathionine bet 22.7 64 0.0014 36.2 2.8 31 344-374 158-188 (396)
250 cd02872 GH18_chitolectin_chito 22.5 83 0.0018 34.8 3.7 29 420-448 92-120 (362)
251 PF00704 Glyco_hydro_18: Glyco 22.5 87 0.0019 34.0 3.8 30 421-450 96-125 (343)
252 TIGR00542 hxl6Piso_put hexulos 22.4 1.1E+02 0.0025 32.2 4.6 54 282-369 16-69 (279)
253 PRK13209 L-xylulose 5-phosphat 22.0 6.8E+02 0.015 26.2 10.5 53 284-370 23-75 (283)
254 PF11896 DUF3416: Domain of un 21.6 93 0.002 31.1 3.4 94 85-212 4-97 (187)
255 TIGR03581 EF_0839 conserved hy 21.5 1.3E+02 0.0027 30.8 4.2 21 285-305 138-158 (236)
256 cd05811 CBM20_glucoamylase Glu 21.5 3.3E+02 0.0071 24.1 6.7 65 120-188 8-75 (106)
257 cd08560 GDPD_EcGlpQ_like_1 Gly 21.3 2.4E+02 0.0053 31.3 6.9 20 354-373 280-299 (356)
258 cd08580 GDPD_Rv2277c_like Glyc 21.3 1.7E+02 0.0037 30.9 5.5 16 355-370 219-235 (263)
259 cd05813 CBM20_genethonin_1 Gen 21.2 3.1E+02 0.0067 23.8 6.3 58 121-187 3-63 (95)
260 PRK15447 putative protease; Pr 20.8 2E+02 0.0043 31.1 6.0 20 352-371 48-67 (301)
261 PRK14453 chloramphenicol/florf 20.6 2.3E+02 0.0049 31.4 6.5 19 352-370 306-324 (347)
262 PF03644 Glyco_hydro_85: Glyco 20.4 1.2E+02 0.0026 33.0 4.2 21 356-376 46-66 (311)
263 PRK07050 cystathionine beta-ly 20.4 99 0.0021 34.8 3.7 26 351-376 166-191 (394)
264 PF09083 DUF1923: Domain of un 20.1 2.4E+02 0.0051 22.0 4.4 30 703-733 8-37 (64)
No 1
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.3e-111 Score=986.90 Aligned_cols=644 Identities=46% Similarity=0.797 Sum_probs=533.6
Q ss_pred CCCCCCCccEEeCCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEE
Q 003977 106 QGQAFPIGVSEVENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYR 185 (782)
Q Consensus 106 ~~~~~~lGa~~~~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~ 185 (782)
+|.+.||||++.++||+|+||||+|++|+|++|... ...+..+++|.. ++|+||+++|+++ .+|++|+|+
T Consensus 1 ~g~~~~LGa~~~~~g~~F~vwap~A~~V~L~l~~~~------~~~~~~~~~m~~---~~~gvW~~~v~~~-~~g~~Y~yr 70 (688)
T TIGR02100 1 PGMPFPLGATWDGQGVNFALFSANAEKVELCLFDAQ------GEKEEARLPLPE---RTDDIWHGYLPGA-QPGQLYGYR 70 (688)
T ss_pred CCCCcCCCeEEeCCcEEEEEECCCCCEEEEEEEcCC------CCceeeEEeccc---CCCCEEEEEECCC-CCCCEEEEE
Confidence 478899999999999999999999999999999642 122344678853 4566999999985 489999999
Q ss_pred EecCCCCCCCccccCceeeeCccccccccccccCccc-----------------cccccccccccCCCCCCCCCCCCCCC
Q 003977 186 VDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDAS-----------------AKLSKFLGTYEFESLPFDWGDNYKLP 248 (782)
Q Consensus 186 i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~w~~~~~~p 248 (782)
|+++..+..|.+|++..+++||||+++.+...++... ........++..+ .+|+|+++..+|
T Consensus 71 v~g~~~~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d-~~~~w~~~~~~p 149 (688)
T TIGR02100 71 VHGPYDPENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVD-PDFDWGGDEQRP 149 (688)
T ss_pred EeeeeCCCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeC-CCCCCCCcccCC
Confidence 9987666678899998999999999998664321100 0000001111222 358998764556
Q ss_pred CCCCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHhh--chHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcC
Q 003977 249 NIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK--IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTW 326 (782)
Q Consensus 249 ~~~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~--LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~w 326 (782)
..+|+++|||||||++|+..+ ++++...+|||+||+++ |||||+||||+||||||+++.+...... ....++|
T Consensus 150 ~~~~~d~iIYE~hvr~Ft~~~-~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~----~~~~~yw 224 (688)
T TIGR02100 150 RTPWEDTIIYEAHVKGFTQLH-PDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLE----KGLRNYW 224 (688)
T ss_pred CCCccccEEEEEEhHHhcCCC-CCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccc----cCCCCcc
Confidence 678999999999999999763 44556678999999996 9999999999999999999843221110 1124679
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCC--
Q 003977 327 GYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGT-- 404 (782)
Q Consensus 327 GY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~-- 404 (782)
||+|.|||+|+++||+.+ +++|||+||++||++||+||||||||||+..+...+.. .+++.++..||+.++.
T Consensus 225 GYd~~~y~a~d~~y~~~g-----~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~-~~~~~d~~~yy~~~~~~~ 298 (688)
T TIGR02100 225 GYNTLGFFAPEPRYLASG-----QVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTL-SFRGIDNASYYRLQPDDK 298 (688)
T ss_pred CcCcccccccChhhcCCC-----CHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcc-cccCCCCCcceEecCCCC
Confidence 999999999999998741 36999999999999999999999999999754444432 5777788888887654
Q ss_pred CCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHhccccCCceEEec
Q 003977 405 GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAE 484 (782)
Q Consensus 405 g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~~~~~~~~~ligE 484 (782)
+.+.++++|+++||+++|+||++|+++++||+++|||||||||+|..|.++.++.. ...+++++|..++++|+++||||
T Consensus 299 ~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~-~~~~~~~~i~~d~~~~~~~ligE 377 (688)
T TIGR02100 299 RYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFD-MLSGFFTAIRQDPVLAQVKLIAE 377 (688)
T ss_pred ceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCc-ccHHHHHHHHhCcccCCeEEEEe
Confidence 77889999999999999999999999999999999999999999999987644322 24678999998888999999999
Q ss_pred ccCCC-CccccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccCCCCCcceEEEeeccCCCCchh
Q 003977 485 PWDCR-GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYD 563 (782)
Q Consensus 485 ~w~~~-~~~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d 563 (782)
+|+.+ +.++.+.|+. .|++||+.||+.|++|++|+.+....|+.++.++.++|....+.|.++||||+|||++||+|
T Consensus 378 ~W~~~~~~~~~~~~~~--~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD~~tl~D 455 (688)
T TIGR02100 378 PWDIGPGGYQVGNFPP--GWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASINFVTAHDGFTLRD 455 (688)
T ss_pred eecCCCCcccccCCCC--ceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCCCchHHH
Confidence 99987 5677777763 57999999999999999999999999999999999888766678899999999999999999
Q ss_pred hhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCCCCCC
Q 003977 564 LVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 643 (782)
Q Consensus 564 ~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~n~y 643 (782)
+++++.|||++||+.++||.++|+|||||+||++.++.+...|.+++|++++++||+|||||||||||+|+++.|++|+|
T Consensus 456 ~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~G~~n~y 535 (688)
T TIGR02100 456 LVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFGRTQQGNNNAY 535 (688)
T ss_pred HHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhccCCCCCCCCc
Confidence 99999999999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCccccccchHHHHHHHHHHHHhcCCCCCCCCcccc-------Ccceeec--------cccCCCCCcEEE
Q 003977 644 GHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNI-------NDVTWHE--------DNWDNYDSKFLA 708 (782)
Q Consensus 644 ~~~~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~-------~~~~~~~--------~~~~~~~~~vla 708 (782)
|+++.+++|+|+..+. ..++++|+|+||+|||+||+|+.+++... .+++|.. ++|.....++|+
T Consensus 536 ~~~~~~~~~dW~~~~~-~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~w~~~~~~~l~ 614 (688)
T TIGR02100 536 CQDNEIGWVDWSLDEG-DDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGEPMTEEDWENPETRLLC 614 (688)
T ss_pred cCCCcccccCcccccc-cHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCCcCChhhcCCCCCCEEE
Confidence 9999999999997554 45899999999999999999999987643 4688953 457555579999
Q ss_pred EEEEcCC-------CCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCceEEEcCcEEEEEEe
Q 003977 709 FTLHDNN-------GADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEA 781 (782)
Q Consensus 709 f~R~~~~-------~~~~lVv~N~~~~~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~~vl~~ 781 (782)
|.+.... .+.++|++|++.+++++.||... ..|.+++||+......+. ...+..+.|+|+|++||.+
T Consensus 615 ~~l~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~~~--~~w~~~~dt~~~~~~~~~----~~~~~~~~v~~~s~~vl~~ 688 (688)
T TIGR02100 615 MVLSDMDPGGDPGADDSLLLLLNAGPEPVPFKLPGGG--GRWELVLDTADEEAPGIH----LDAGQEAELPARSVLLLRR 688 (688)
T ss_pred EEEeCCccCCCCCCCCeEEEEECCCCCCeEEECCCCC--CcEEEEecCCCCCCcccc----ccCCCEEEEcCCEEEEEeC
Confidence 9997532 14799999999999999999742 689999999754433221 1235679999999999974
No 2
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=9e-111 Score=972.40 Aligned_cols=632 Identities=39% Similarity=0.642 Sum_probs=525.7
Q ss_pred cCCCCCCCCccEEeCCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEE
Q 003977 104 TSQGQAFPIGVSEVENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYG 183 (782)
Q Consensus 104 ~~~~~~~~lGa~~~~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~ 183 (782)
+.+|.+.||||++.++||+|+||||+|++|+|++|.+.. ...+++|. .++|+||+++|+++ .+|++|+
T Consensus 4 ~~~g~~~pLGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~--------~~~~~~m~---~~~~gvW~~~v~~~-~~G~~Y~ 71 (658)
T PRK03705 4 LAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDENG--------QEQRYDLP---ARSGDIWHGYLPGA-RPGLRYG 71 (658)
T ss_pred cCCCCCCCcceEEeCCCEEEEEECCCCCEEEEEEEcCCC--------CeeeEeee---eccCCEEEEEECCC-CCCCEEE
Confidence 568999999999999999999999999999999986421 12356774 23566999999995 5899999
Q ss_pred EEEecCCCCCCCccccCceeeeCccccccccccccCcc--------ccccc--cccccccCCCCCCCCCCCCCCCCCCCC
Q 003977 184 YRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDA--------SAKLS--KFLGTYEFESLPFDWGDNYKLPNIPEK 253 (782)
Q Consensus 184 y~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~w~~~~~~p~~~~~ 253 (782)
|+|+++..+..|++|++..+++||||+++.+...++.. ....+ ....+... ..+|+|+++. +|..+|+
T Consensus 72 yrv~g~~~p~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-d~~~~W~~~~-~p~~~~~ 149 (658)
T PRK03705 72 YRVHGPWQPAQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVV-DDHYDWEDDA-PPRTPWG 149 (658)
T ss_pred EEEccccCcccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEe-cCCCCCCCCC-CCCCCcc
Confidence 99998766777999999999999999999765322110 00000 00111112 2579998753 4667899
Q ss_pred CeEEEEEecccccCCCCCCCCCCCCCCHHHHHh--hchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCC
Q 003977 254 DLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQ--KIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTI 331 (782)
Q Consensus 254 ~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~--~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~ 331 (782)
++||||+||++||..+. +++...+|+|+|+++ +|||||+||||+||||||+++.+...... ....++|||+|.
T Consensus 150 ~~vIYE~hvr~ft~~~~-~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~----~g~~~ywGYd~~ 224 (658)
T PRK03705 150 STVIYEAHVRGLTYLHP-EIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQR----MGLSNYWGYNPL 224 (658)
T ss_pred ccEEEEEehhhhcccCC-CCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccc----cccccccCcccc
Confidence 99999999999997533 334456899999997 49999999999999999999854221110 012478999999
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcC
Q 003977 332 NFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYA 411 (782)
Q Consensus 332 dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~ 411 (782)
+||+|+++|||.+. .+++|||+||++||++||+||||||||||+..+..++++ .+++.++++||..++.+.+.+++
T Consensus 225 ~yfa~d~~ygt~~~---~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~-~~~~~d~~~yy~~~~~g~~~~~~ 300 (658)
T PRK03705 225 AMFALDPAYASGPE---TALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTL-SLRGIDNRSYYWIREDGDYHNWT 300 (658)
T ss_pred cccccccccCCCCc---chHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcch-hcccCCCccceEECCCCCcCCCC
Confidence 99999999999743 568999999999999999999999999999866566765 67788888899888888899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHhccccCCceEEecccCCC-C
Q 003977 412 GCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCR-G 490 (782)
Q Consensus 412 ~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~~~~~~~~~ligE~w~~~-~ 490 (782)
+|+++||++||+|+++|+++++||++||||||||||+|..|.++. +.+. ..++++++..++++++++||||+|+.+ +
T Consensus 301 g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~-~~~~-~~~~~~ai~~d~vl~~~~ligE~Wd~~~~ 378 (658)
T PRK03705 301 GCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTP-EFRQ-DAPLFTAIQNDPVLSQVKLIAEPWDIGPG 378 (658)
T ss_pred CccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCc-ccch-hhHHHHHHhhCccccceEEEEecccCCCC
Confidence 999999999999999999999999999999999999999998653 2222 256788998889999999999999987 5
Q ss_pred ccccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccCCCCCcceEEEeeccCCCCchhhhhhccc
Q 003977 491 LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYK 570 (782)
Q Consensus 491 ~~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d~~~~~~~ 570 (782)
.++.+.|+. .|++||+.||+.|+.|+.++.+....++.++.++.++|....+.|.++||||++||++||+|+++++.+
T Consensus 379 ~~~~g~~~~--~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D~~~~~~~ 456 (658)
T PRK03705 379 GYQVGNFPP--PFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRDCVCFNQK 456 (658)
T ss_pred hhhhcCCCc--ceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHHHHhhhcc
Confidence 677788873 579999999999999999888888999999999999887777789999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCCCCCCCCCCCCC
Q 003977 571 HNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAIN 650 (782)
Q Consensus 571 ~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~n~y~~~~~~~ 650 (782)
||.+||+.++||.++|+|||||.||.+.++.+...+.+++|+++++||++|||||||||||+|++|.|++|+||+++.++
T Consensus 457 hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~grtq~G~nN~y~~~~~i~ 536 (658)
T PRK03705 457 HNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNALT 536 (658)
T ss_pred chhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhccCCCCCCCCccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccchHHHHHHHHHHHHhcCCCCCCCCccc--cCcceeec--------cccCCCCCcEEEEEEEcCCCCeEE
Q 003977 651 NFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLN--INDVTWHE--------DNWDNYDSKFLAFTLHDNNGADIY 720 (782)
Q Consensus 651 ~~~W~~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~--~~~~~~~~--------~~~~~~~~~vlaf~R~~~~~~~~l 720 (782)
+|+|+.. ..++++|+|+||+|||+||+|+..++.. ..++.|+. ..|.. ...+++|... +.++
T Consensus 537 ~~dW~~~---~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~-~~~~~~~~~~----~~~~ 608 (658)
T PRK03705 537 WLDWSQA---DRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQ-GPKQLQILLS----DRWL 608 (658)
T ss_pred ccccchh---hhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCC-cceEEEEEEC----CCEE
Confidence 9999964 2589999999999999999999988732 23688863 23532 3677888873 4699
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCceEEEcCcEEEEEEeC
Q 003977 721 LAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEAK 782 (782)
Q Consensus 721 Vv~N~~~~~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~~vl~~k 782 (782)
|++|.+.+++++.||. +.|.++++++... . ......+.++++|++||..+
T Consensus 609 v~~N~~~~~~~~~lp~----~~w~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~ 658 (658)
T PRK03705 609 IAINATLEVTEIVLPE----GEWHAIPPFAGED-N-------PVITAVWHGPAHGVCVFQRQ 658 (658)
T ss_pred EEECCCCCCeEEECCC----cceEEEEccCCCc-c-------cccCceeeecCcEEEEEecC
Confidence 9999999999999995 4799996544321 1 12345688999999999864
No 3
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-110 Score=954.23 Aligned_cols=648 Identities=46% Similarity=0.799 Sum_probs=562.0
Q ss_pred CcccCCCCCCCCccEE---eCCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCC
Q 003977 101 PLKTSQGQAFPIGVSE---VENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPR 177 (782)
Q Consensus 101 ~~~~~~~~~~~lGa~~---~~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~ 177 (782)
......|.+.||||++ ...|++|++|+.+|++|+||++.... .......++++ .+.|++|++.+|++.
T Consensus 9 ~~~~~~g~~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~-----~~~~~~~~~~~---~~~G~iw~~~~p~~~- 79 (697)
T COG1523 9 VMTLQPGKPYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAG-----NTEEGRLYPYD---GELGAIWHLWLPGAK- 79 (697)
T ss_pred ceeeccCCcccccceeeeccCcceEEeeeccccceEEEEecCccc-----ccccccccccC---CccccEEEEEcCCCc-
Confidence 3567789999999998 45999999999999999999986531 11111225664 467889999999975
Q ss_pred CCceEEEEEecCCCCCCCccccCceeeeCccccccccccccCcccc-----------------ccccccccccCCCCCCC
Q 003977 178 SEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASA-----------------KLSKFLGTYEFESLPFD 240 (782)
Q Consensus 178 ~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~ 240 (782)
.++.|.|+++++..+..|++|++.++..||||+.+.|...++.... .......++..+ ..|+
T Consensus 80 ~g~~y~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~-~~~~ 158 (697)
T COG1523 80 PGQVYGYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVID-PLFD 158 (697)
T ss_pred eeeEEEEecCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEec-cccc
Confidence 7999999999988788999999999999999999988765441100 000011111111 2289
Q ss_pred CCCCCCCCCCCCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHhh--chHHHHcCCcEEEECCccccchhhhhhcCCC
Q 003977 241 WGDNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK--IPHLLELGINAVELLPVFEFDEMEFQRRRNP 318 (782)
Q Consensus 241 w~~~~~~p~~~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~--LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~ 318 (782)
|..+ ++|..||+++||||+|||+||. .++++++..+|||.|+++. |+|||+||||||+||||+++.........
T Consensus 159 w~~~-~~~~~p~~~~vIYE~HVr~fT~-~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~-- 234 (697)
T COG1523 159 WEND-KPPRIPWEDTVIYEAHVRDFTQ-LHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKS-- 234 (697)
T ss_pred cccC-CCCCCCccceEEEEeeeccccc-CCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEecccccccc--
Confidence 9876 6678899999999999999997 6778999999999999999 99999999999999999999665443322
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcc
Q 003977 319 RDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 398 (782)
Q Consensus 319 ~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y 398 (782)
...+||||+|.+||+|+++|.+.|. |..|+.|||.||+++|++||+||||||||||++++...|-+ +|+++++.+|
T Consensus 235 --gl~n~WGYdP~~fFAp~~~Yss~p~-p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~-~f~~id~~~Y 310 (697)
T COG1523 235 --GLNNNWGYDPLNFFAPEGRYASNPE-PATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTL-SFRGIDPNYY 310 (697)
T ss_pred --ccccccCCCcccccCCCccccCCCC-cchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCccc-ccccCCcCce
Confidence 2479999999999999999999988 99999999999999999999999999999999876666655 8999999999
Q ss_pred eeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHhccccCC
Q 003977 399 YMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSR 478 (782)
Q Consensus 399 y~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~~~~~~~ 478 (782)
|+.+++|.+.|++||||+||++||+||++|+|+|+||++||||||||||+|+.+.+++++... .++++..+..++++..
T Consensus 311 yr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~-~~~l~~~~~~~p~l~~ 389 (697)
T COG1523 311 YRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDI-NANLFLAGEGDPVLSG 389 (697)
T ss_pred EEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhcccccccccc-CcchhhhccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999874333 3568888888889999
Q ss_pred ceEEecccCCC-CccccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccCCCCCcceEEEeeccC
Q 003977 479 CKIIAEPWDCR-GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHD 557 (782)
Q Consensus 479 ~~ligE~w~~~-~~~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD 557 (782)
+++|||+|+.+ +.|++|.|++..+|++||+.|++.+++|++|+.+....|+.++.|+.++|....+.|.++||||++||
T Consensus 390 ~kliAepwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS~d~~~~~~~~p~~sINyv~aHD 469 (697)
T COG1523 390 VKLIAEPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDLYKRNGRRPSQSINYVTAHD 469 (697)
T ss_pred ceeeecchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCccHHHHHHHhhcCcchhhccCCCccceeeEEeecC
Confidence 99999999998 78999999977789999999999999999999999999999999999999988899999999999999
Q ss_pred CCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccC
Q 003977 558 GFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRY 637 (782)
Q Consensus 558 ~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~ 637 (782)
++||+|+++++.|||++|||.++||.++|+|||||+||.+.++.+...|.++.+++++.|++++|+||+-+|||+|+++.
T Consensus 470 gfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml~~gDe~~rtq~ 549 (697)
T COG1523 470 GFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPMLLAGDEFGRTQY 549 (697)
T ss_pred CCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccCCCccccccchHHHHHHHHHHHHhcCCCCCCCCcccc----Ccceee--------ccccCCCCCc
Q 003977 638 GNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNI----NDVTWH--------EDNWDNYDSK 705 (782)
Q Consensus 638 g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~----~~~~~~--------~~~~~~~~~~ 705 (782)
||+|+||+++.+|+++|+. .....+++|+++||+|||+||+|+...+... .+|.|. ...|......
T Consensus 550 gnnNsYcqdn~inwlDW~~--~~~~~l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~ 627 (697)
T COG1523 550 GNNNAYCQDNEINWLDWST--EANNDLVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITWLNWNGIPLTQDDWNNGFTG 627 (697)
T ss_pred cccccccCCcccceeccCc--cccHHHHHHHHHHHHHhhhcchhcccchhhccCCCcccceeccCCeeechhcccCCCCc
Confidence 9999999999999999993 3456999999999999999999999888763 467765 2457666678
Q ss_pred EEEEEEEcCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCceEEEcCcEEEEEEe
Q 003977 706 FLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEA 781 (782)
Q Consensus 706 vlaf~R~~~~~~~~lVv~N~~~~~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~~vl~~ 781 (782)
.+++..... ...++|++|...+++.+.||... +.|..++++....... ...+.+++.|+.||..
T Consensus 628 ~l~~~l~~~-~~~~lv~~N~~~~~~~~~lp~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~s~~vl~~ 691 (697)
T COG1523 628 ALAVVLDGD-KERLLVLINATAEPVEFELPEDE--GKWAGLVDTSTPPGFD---------IREVSLPGRSVLVLTR 691 (697)
T ss_pred eEEEEecCC-CccEEEEecCCccccceeccccc--CcceeeecccCCCCcc---------cceeecCCcEEEEEee
Confidence 899988764 57899999999999999999743 6799999886543211 1158899999999874
No 4
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1e-98 Score=922.10 Aligned_cols=600 Identities=39% Similarity=0.662 Sum_probs=501.6
Q ss_pred cCCCCCCCCccEEeCCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEE
Q 003977 104 TSQGQAFPIGVSEVENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYG 183 (782)
Q Consensus 104 ~~~~~~~~lGa~~~~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~ 183 (782)
..+|.+.||||++.++||+|+||||+|++|+||+|.. |......+++|. .++|+||+++|+++. .|++|+
T Consensus 8 ~~~g~~~plGA~~~~~gv~F~v~ap~A~~V~L~lf~~------~~~~~~~~~~l~---~~~g~vW~~~i~~~~-~g~~Yg 77 (1221)
T PRK14510 8 VSPGFREPLGAVPDGGGVNLALFSGAAERVEFCLFDL------WGVREEARIKLP---GRTGDVWHGFIVGVG-PGARYG 77 (1221)
T ss_pred cCCCCCCCCceEEECCeEEEEEECCCCCEEEEEEEEC------CCCCeeEEEECC---CCcCCEEEEEEccCC-CCcEEE
Confidence 4578999999999999999999999999999999864 222233467773 356779999999864 789999
Q ss_pred EEEecCCCCCCCccccCceeeeCcccccccccccc-----Ccc---cc---cccccc--ccccCCCCCCCCCCCCCCCCC
Q 003977 184 YRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHF-----GDA---SA---KLSKFL--GTYEFESLPFDWGDNYKLPNI 250 (782)
Q Consensus 184 y~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~-----~~~---~~---~~~~~~--~~~~~~~~~~~w~~~~~~p~~ 250 (782)
|+|+++..+..|++|++..+++||||+.+.+...+ ++. .. ..+... .++.. .+|+|.++ .+|..
T Consensus 78 yrv~g~~~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~--~~~~W~~~-~~~~~ 154 (1221)
T PRK14510 78 NRQEGPGGPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVP--TPFTWAPR-SPLHG 154 (1221)
T ss_pred EEeccCCCcccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceee--cccccCCC-CCCCC
Confidence 99999877888999999999999999999865432 110 00 001110 11112 27999865 44667
Q ss_pred CCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHH--hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCC
Q 003977 251 PEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLI--QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGY 328 (782)
Q Consensus 251 ~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~--~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY 328 (782)
+|+++||||+||++||... +.+....+|+|++|. ++|+|||+||||+||||||+++.+...... ....+||||
T Consensus 155 ~~~d~vIYE~hvr~ft~~~-~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~----~g~~~yWGY 229 (1221)
T PRK14510 155 DWDDSPLYEMNVRGFTLRH-DFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQ----LGLSNYWGY 229 (1221)
T ss_pred CcccCeEEEEccchhhccC-CCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCccccccc----ccCcCcCCC
Confidence 8999999999999999632 233334569999999 679999999999999999999843221110 113578999
Q ss_pred CCCCCCCCCCCCC--CCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeC--CC
Q 003977 329 STINFFSPMSRYA--AGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVD--GT 404 (782)
Q Consensus 329 ~~~dy~a~d~~yG--t~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d--~~ 404 (782)
++.|||+|+++|| +. +|||+||++||++||+||||||||||+.++..+|.+ .+++.++..||..+ ..
T Consensus 230 ~~~~yfa~dp~yg~~~~--------~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~-~~~~~d~~~yy~~~~~~~ 300 (1221)
T PRK14510 230 NTVAFLAPDPRLAPGGE--------EEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTL-SAYGSDNSPYYRLEPGNP 300 (1221)
T ss_pred CCCCCCCcChhhccCcH--------HHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcc-cccCCCCCCceEecCCCC
Confidence 9999999999999 54 999999999999999999999999999865444433 56777888888876 34
Q ss_pred CCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHhccccCCceEEec
Q 003977 405 GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAE 484 (782)
Q Consensus 405 g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~~~~~~~~~ligE 484 (782)
+.+.+++||++.+|+++|+|+++|+++++||++ |||||||||+|+.+.++..+.+....+.++++.+++++.++++|||
T Consensus 301 ~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE 379 (1221)
T PRK14510 301 KEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAE 379 (1221)
T ss_pred CcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEe
Confidence 678899999999999999999999999999997 9999999999999965544445555677888888888889999999
Q ss_pred ccCCC-CccccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccCCCCCcceEEEeeccCCCCchh
Q 003977 485 PWDCR-GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYD 563 (782)
Q Consensus 485 ~w~~~-~~~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d 563 (782)
+|+.+ +.+..|.|+.. |++||+.|++.+++|++|+.+....++.++.++.+.|....+.+..+||||+|||++||.|
T Consensus 380 ~Wd~~~~~~~~g~f~~~--~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~rl~d 457 (1221)
T PRK14510 380 VWDDGLGGYQYGKFPQY--WGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRSINFITAHDGFTLLD 457 (1221)
T ss_pred cccCCCCccccCCCCcc--eeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCchHHHH
Confidence 99987 55777888753 7899999999999999999888899999999999988765677899999999999999999
Q ss_pred hhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCCCCCC
Q 003977 564 LVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 643 (782)
Q Consensus 564 ~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~n~y 643 (782)
+++|+.|||++|||.|+||.++|.|||||+||.+.++.+..++.+++|++++++||+|||||||||||+|+++.||+|.|
T Consensus 458 l~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE~g~tq~Gn~n~y 537 (1221)
T PRK14510 458 LVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDEAGRSQNGNNNGY 537 (1221)
T ss_pred HhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchhcccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCccccccchHHHHHHHHHHHHhcCCCCCCCCcccc--------Ccceeec--------cccCCCCCcEE
Q 003977 644 GHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNI--------NDVTWHE--------DNWDNYDSKFL 707 (782)
Q Consensus 644 ~~~~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~--------~~~~~~~--------~~~~~~~~~vl 707 (782)
|+++++++|+|+.. ..++++|+|+||+|||+||+|+.+++... .+|.|+. ..|.+.....+
T Consensus 538 ~~~~~r~~~~W~~~---~~~l~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv~w~~~~g~~~~~~~w~~~~~~~~ 614 (1221)
T PRK14510 538 AQDNNRGTYPWGNE---DEELLSFFRRLIKLRREYGVLRQGEFSSGTPVDASGGKDVEWLRRKGEQNQDRFWDKRSTEAL 614 (1221)
T ss_pred CCCCccccCCcccc---cHHHHHHHHHHHHHHHhChhhccCccccCcccccCCCCCEEEECCCCCcCChhhcCCCCCCEE
Confidence 99999999999874 34899999999999999999999988743 3788873 35666667778
Q ss_pred EEEEEcCC-----CCeEEEEEeCCCCcEEEEcCC
Q 003977 708 AFTLHDNN-----GADIYLAFNAHDFFVKVSLPP 736 (782)
Q Consensus 708 af~R~~~~-----~~~~lVv~N~~~~~~~~~Lp~ 736 (782)
++...... ++.++|++|++.+++++.||.
T Consensus 615 ~~~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~ 648 (1221)
T PRK14510 615 VAVLNRPAGERQVDDRFAVLLNSHHEELTLHLPE 648 (1221)
T ss_pred EEEEecCCCCCCCCCeEEEEECCCCCCeEEECCh
Confidence 87775421 247999999999999999995
No 5
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.6e-92 Score=827.65 Aligned_cols=668 Identities=22% Similarity=0.362 Sum_probs=485.8
Q ss_pred ccccccCCCCCCccccccccccccCCccccccccccchhhccccccccccCCcccCCCCCCCCccEEeCCcEEEEEEcCC
Q 003977 50 RLSKKASSGNTPRHFNKTSSSVKHTTPSAYNQPTQERVLEEESPRVSETTLPLKTSQGQAFPIGVSEVENGINFAIFSQH 129 (782)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGa~~~~~g~~F~vwaP~ 129 (782)
+++|..+..+|..........++.++..+.+..+.+.++..|..|++++.+..+.+.| +|||++.+++++|+||||+
T Consensus 156 ~~phl~~~~a~~~~~~~~~~~~l~~ql~~~~~~~~g~~~~at~vq~~~~lD~~y~y~~---~LGA~~~~~g~~F~VWAPt 232 (970)
T PLN02877 156 KFPHIRGYRAFKVPSTVDVKDLLKCQLAVAAFDADGKCTDATGLQLPGVLDDLFAYDG---PLGAHFSKDAVSLYLWAPT 232 (970)
T ss_pred cCccccCCcceeCCccccHHHHhhcceEEEEECCCCCEEccccccchhhhhhhccCCC---CCcceEecCCEEEEEECCC
Confidence 6888889999988877778899999999999999999999999999999999877765 7999999999999999999
Q ss_pred CCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEecCCCCCCCccccCceeeeCccc
Q 003977 130 ATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYA 209 (782)
Q Consensus 130 a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPyA 209 (782)
|++|+|++|.+.. .......++|+ ..++||++++++ .++|++|+|+|+... +..|.. ...+++||||
T Consensus 233 A~~V~L~lyd~~~-----~~~~~~~~~m~----~~~GVWsv~v~~-~~~G~~Y~Y~V~v~~-p~~g~~--~~~~v~DPYA 299 (970)
T PLN02877 233 AQAVSLCLYDDPR-----GKEPLEIVQLK----ESNGVWSVEGPK-SWEGCYYVYEVSVYH-PSTGKV--ETCYANDPYA 299 (970)
T ss_pred CCEEEEEEecCCC-----CccceEEeccc----CCCCEEEEEecc-CCCCCeeEEEEeecc-cCCCcc--cccccCCccc
Confidence 9999999997531 11233456673 344499999998 568999999998421 222221 3457899999
Q ss_pred cccccccccCccccccccccccccCCCCCCCCCCC--CCCCCCCCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHhh
Q 003977 210 KLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDN--YKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK 287 (782)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~~~p~~~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~ 287 (782)
+++..+... +.+....+....+.+|... ..++..+++++||||+|||+|+..++ +++...+|+|.+++++
T Consensus 300 ~als~ng~~-------S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~-sv~~~~RGtylgftE~ 371 (970)
T PLN02877 300 RGLSADGRR-------TLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDE-TVHPDFRGGYLAFTSQ 371 (970)
T ss_pred eEEecCCCc-------eEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCC-CCCcCCCCcchhhhhh
Confidence 998653321 1121111123356789752 23445678999999999999998764 4566788999999987
Q ss_pred -------chHHHHcCCcEEEECCccccchhhhhhcC------------CC------------CCCCCCcCCCCCCCCCCC
Q 003977 288 -------IPHLLELGINAVELLPVFEFDEMEFQRRR------------NP------------RDHMVNTWGYSTINFFSP 336 (782)
Q Consensus 288 -------LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~------------~~------------~~~~~~~wGY~~~dy~a~ 336 (782)
|+|||+||||||+|||+|++.+.++.... .+ .+...+||||+|.+||+|
T Consensus 372 ~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaP 451 (970)
T PLN02877 372 DSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVP 451 (970)
T ss_pred hhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCC
Confidence 55566669999999999999664321100 00 001248999999999999
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCcc--ccccCCCCCcceeeCCCCCccCcCCCC
Q 003977 337 MSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYT--TSFRGIDNKVYYMVDGTGQLLNYAGCG 414 (782)
Q Consensus 337 d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~--~~~~~~~~~~yy~~d~~g~~~~~~~~~ 414 (782)
+++|+|+|.+| .||.|||+||++||++||+||||||||||+. .+++. ..++.+.+.+||+.+++|.+.+ +.|+
T Consensus 452 EgSYatdP~g~-~RI~efk~mV~~lH~~GI~VImDVVyNHt~~---~g~~~~~s~ld~~vP~YY~r~~~~G~~~n-s~c~ 526 (970)
T PLN02877 452 KGSYASNPDGP-CRIIEFRKMVQALNRIGLRVVLDVVYNHLHS---SGPFDENSVLDKIVPGYYLRRNSDGFIEN-STCV 526 (970)
T ss_pred CcccccCCCCc-chHHHHHHHHHHHHHCCCEEEEEECCccccC---CCCcchhhcccCCCCCceEEECCCCCccc-CCcc
Confidence 99999998777 7999999999999999999999999999986 34543 3466666677777788888888 5577
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHhc--cc-cCCceEEecccCCCCc
Q 003977 415 NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD--AI-LSRCKIIAEPWDCRGL 491 (782)
Q Consensus 415 ~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~~--~~-~~~~~ligE~w~~~~~ 491 (782)
++.+.+++|||++|+|+++||++||||||||||+|+++..+++ ....+.+++|.++ .+ .|+++|+||+|+.+..
T Consensus 527 n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm---~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~ 603 (970)
T PLN02877 527 NNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTM---VRAKDALQSLTLERDGVDGSSIYLYGEGWDFGEV 603 (970)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHH---HHHHHHHHHHhhhhcccCCCceEEEEeCCCCCCc
Confidence 8889999999999999999999999999999999999988753 2334455555432 12 3789999999997643
Q ss_pred cccCCCC-----C--cccchhhchhHHHHHHH---HHh-CCCCch--------------------------hhHHHHhhc
Q 003977 492 YLVGKFP-----N--WDRWAEWNGKYRDDLRK---FIK-GDPGMK--------------------------GILATRISG 534 (782)
Q Consensus 492 ~~~g~~~-----~--~~~~~~~n~~f~~~i~~---~~~-g~~~~~--------------------------~~~~~~l~~ 534 (782)
.....+. + ..+++.||+.+||.|+. |-. ...|+. ..+...+.|
T Consensus 604 ~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaG 683 (970)
T PLN02877 604 AKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAG 683 (970)
T ss_pred ccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCCCceecccccCCcccccccchhhhhhhhhhHHHHHHHhcc
Confidence 1111110 0 12567788777777763 200 001111 111223344
Q ss_pred Cccc------------------ccc----CCCCCcceEEEeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCC
Q 003977 535 SSDL------------------YRV----NKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCG 592 (782)
Q Consensus 535 ~~~~------------------~~~----~~~~p~~~vnfi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g 592 (782)
+... |.. ....|.++|||+++|||.||+|.+.+....+.
T Consensus 684 nl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D~l~~~~~~~~------------------- 744 (970)
T PLN02877 684 NLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNETLFDIISLKTPMEI------------------- 744 (970)
T ss_pred chhccccccccccccccccccccCCcccccccCHHHheeeeeccCCchHHHHHHhhcCCCC-------------------
Confidence 4321 221 12478899999999999999999876432110
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCCCCCCCCCCCCCccCCCccc-----------cc-
Q 003977 593 FEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE-----------TK- 660 (782)
Q Consensus 593 ~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~n~y~~~~~~~~~~W~~~~-----------~~- 660 (782)
....+.++.++++++++|+||||+|++|+||+++|.+++|+|++.+.+|.+||+... ++
T Consensus 745 ---------s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~ 815 (970)
T PLN02877 745 ---------SVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNE 815 (970)
T ss_pred ---------CHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCccccCCChhHhcc
Confidence 012345677889999999999999999999999999999999999999999999832 11
Q ss_pred ---------------------cchHHHHHHHHHHHHhcCCCCCCCCccccC-cceeeccccCCCCCcEEEEEEEcCCC--
Q 003977 661 ---------------------KNSHYRFFSEVIKFRQSRRVFGREDFLNIN-DVTWHEDNWDNYDSKFLAFTLHDNNG-- 716 (782)
Q Consensus 661 ---------------------~~~l~~~~~~Li~lRk~~paL~~g~~~~~~-~~~~~~~~~~~~~~~vlaf~R~~~~~-- 716 (782)
-....++||+||+|||++|+||.++...+. .+.|+... .....++|+|...+..+
T Consensus 816 ~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g-~~~~~gvi~~~i~d~~~~~ 894 (970)
T PLN02877 816 DNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTG-PSSIPGVIVMSIEDGHEGV 894 (970)
T ss_pred hhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccC-CCcCCCEEEEEEcCCCCcc
Confidence 024588999999999999999999876543 47776432 12346999999977421
Q ss_pred ----------CeEEEEEeCCCCcEEEEcCCCCCCCCeE-EEecCCCCCCCCCCCC-CCCCCCceEEEcCcEEEEEEe
Q 003977 717 ----------ADIYLAFNAHDFFVKVSLPPPPPKRQWF-RVVDTNLESPDDIVPE-GAAGTGSTYNLSPYSSILLEA 781 (782)
Q Consensus 717 ----------~~~lVv~N~~~~~~~~~Lp~~~~~~~w~-~l~~t~~~~~~~~~~~-~~~~~~~~i~l~p~s~~vl~~ 781 (782)
+.++|++|.+.+++++.+|... .|. .|...+.......... .......+++|+|+|+.||+.
T Consensus 895 ~~~~~~d~~~~~ivVv~Na~~~~~~~~~~~~~---~~~~~l~~v~~~~~d~~~~~~~~~~~~~~~tvp~~t~aVfv~ 968 (970)
T PLN02877 895 PGLSQLDPIYSRIVVIFNARPTEVSFESPALK---GRTLELHPVQVMSADEVVKKSVYEASSGVFTVPPRTTAVFVE 968 (970)
T ss_pred ccccccccccCcEEEEEcCCCccEEEeccccc---ccceeecccccccccceeccceeeccCCeEEecCceEEEEEe
Confidence 4699999999999999999732 332 2221111111111111 111234689999999999974
No 6
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=3.1e-91 Score=820.68 Aligned_cols=664 Identities=22% Similarity=0.367 Sum_probs=486.5
Q ss_pred cccccccCCCCCCcc-ccccccccccCCccccccccccchhhccccccccccCCcccCCCCCCCCccEEeCCcEEEEEEc
Q 003977 49 LRLSKKASSGNTPRH-FNKTSSSVKHTTPSAYNQPTQERVLEEESPRVSETTLPLKTSQGQAFPIGVSEVENGINFAIFS 127 (782)
Q Consensus 49 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGa~~~~~g~~F~vwa 127 (782)
-+++|..+..+|... ...+...++.++..+.+..+.+.++..|..|++++.+.++.+.|...+|||++.++|++|+|||
T Consensus 64 ~~~phl~~~~a~~~~~~~~~~~~~l~~ql~~~~~~~~g~~~~at~vq~~~~lD~~y~y~~~~~~LGa~~~~~gv~FrVWA 143 (898)
T TIGR02103 64 MKFPHLASYKAFKLPADDANLRDLLKGQLVVVAYDANGILISATGVQTAGVLDALYAYAGPALSLGATLTDSGVTFRLWA 143 (898)
T ss_pred hhCcccccCcceecCcchhHHHHHhhccEEEEEECCCCCEeeecccccchhhhHHhhcCCCCCCCCcEEeCCcEEEEEEC
Confidence 368888899999877 4456778899999999999999999999999999999999888876779999999999999999
Q ss_pred CCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCC-CCCCEEEEEEeCCCCCCceEEEEEecCCCCCCCccccCceeeeC
Q 003977 128 QHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVN-KTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLID 206 (782)
Q Consensus 128 P~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~vW~~~v~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~D 206 (782)
|+|++|+|++|.+. +. ...+++|.+ . ..| +|++++++ .++|.+|+|+|+... +..|. .+..+++|
T Consensus 144 PtA~~V~L~Ly~~~-----~~--~~~~~~M~~--~~~~G-VWsv~v~g-~~~G~~Y~Y~V~v~~-p~~G~--v~~~~v~D 209 (898)
T TIGR02103 144 PTAQQVKLHIYSAS-----KK--VETTLPMTR--DSTSG-VWSAEGGS-SWKGAYYRYEVTVYH-PSTGK--VETYLVTD 209 (898)
T ss_pred CCCCEEEEEEEcCC-----CC--ccceEeCcc--CCCCC-EEEEEECc-CCCCCEeEEEEEEec-CCCCe--ECCeEEeC
Confidence 99999999999753 21 234677853 3 355 99999998 468999999998422 11122 13467899
Q ss_pred ccccccccccccCccccccccccccccCCCCCCCCCCCC--CCCCCCCCCeEEEEEecccccCCCCCCCCCCCCCCHHHH
Q 003977 207 PYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNY--KLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGL 284 (782)
Q Consensus 207 PyA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~p~~~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl 284 (782)
|||+++..+..++ .+....+....+.+|..+. .++..+++++||||+|||+|+..+++ ++...+|+|.++
T Consensus 210 PYA~als~n~~~S-------~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s-~~~~~rGtYla~ 281 (898)
T TIGR02103 210 PYSVSLSANSEYS-------QVVDLNDPALKPEGWDALAMPKPQLASFADMVLYELHIRDFSANDES-VPAELRGKYLAF 281 (898)
T ss_pred cCcceEcCCCCCe-------EEeCCccccCCCcchhhcccccCCcCCCcccEEEEEeccccccCCCC-CCcCcCceeeeh
Confidence 9999997554332 2222212233577897643 22234789999999999999987665 445678999999
Q ss_pred Hhh-------chHHHHcCCcEEEECCccccchhhhhhcC--------------CC-------------------------
Q 003977 285 IQK-------IPHLLELGINAVELLPVFEFDEMEFQRRR--------------NP------------------------- 318 (782)
Q Consensus 285 ~~~-------LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~--------------~~------------------------- 318 (782)
+|+ |+||++||||||+|||||++.++++.... .|
T Consensus 282 tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (898)
T TIGR02103 282 TAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDN 361 (898)
T ss_pred hccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhccccccccccccccccccccccccccccc
Confidence 986 55556779999999999999764432100 00
Q ss_pred ----------CCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCcc-
Q 003977 319 ----------RDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYT- 387 (782)
Q Consensus 319 ----------~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~- 387 (782)
.+...+||||+|.+||+|+++|++.|. +..||.|||+||++||++||+||||||||||+..+ +..
T Consensus 362 ~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~-g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g---~~~~ 437 (898)
T TIGR02103 362 PEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPE-GPARIKEFREMVQALNKTGLNVVMDVVYNHTNASG---PNDR 437 (898)
T ss_pred hhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCC-CchHHHHHHHHHHHHHHCCCEEEEEeecccccccC---ccCc
Confidence 001236899999999999999999885 66899999999999999999999999999999743 322
Q ss_pred ccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHH
Q 003977 388 TSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLI 467 (782)
Q Consensus 388 ~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l 467 (782)
..++...+.+||+.+.+|.+.++++| ++++++||+||++|+|+++||++||||||||||+|++++.++ +
T Consensus 438 s~ld~~~P~YY~r~~~~G~~~n~~~~-~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~~~f----------~ 506 (898)
T TIGR02103 438 SVLDKIVPGYYHRLNEDGGVENSTCC-SNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHHPKAQ----------M 506 (898)
T ss_pred ccccccCcHhhEeeCCCCCeecCCCC-cCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhCCHHH----------H
Confidence 13455555566666767888888777 578999999999999999999999999999999999997763 4
Q ss_pred HHHHh--ccccCCceEEecccCCCCccc-----cCCCCC--cccchhhchhHHHHHHHH--HhC------CCCch-----
Q 003977 468 RAIAK--DAILSRCKIIAEPWDCRGLYL-----VGKFPN--WDRWAEWNGKYRDDLRKF--IKG------DPGMK----- 525 (782)
Q Consensus 468 ~~i~~--~~~~~~~~ligE~w~~~~~~~-----~g~~~~--~~~~~~~n~~f~~~i~~~--~~g------~~~~~----- 525 (782)
+++.+ +++.|+++++||.|+.+.... .+...+ ..+++.||+.+|+.|+.- +.. ..|+.
T Consensus 507 ~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~ 586 (898)
T TIGR02103 507 LAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQGFGSGLAV 586 (898)
T ss_pred HHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccchhhHhcCCCccccccccccCcceecCccc
Confidence 44433 346899999999998764221 111111 124677777777776631 111 01110
Q ss_pred --------------------hhHHHHhhcCccc-----------------cc----cCCCCCcceEEEeeccCCCCchhh
Q 003977 526 --------------------GILATRISGSSDL-----------------YR----VNKRKPYHSINFIIAHDGFTLYDL 564 (782)
Q Consensus 526 --------------------~~~~~~l~~~~~~-----------------~~----~~~~~p~~~vnfi~~HD~~tl~d~ 564 (782)
..+...+.|+..- |. .....|.++|||+++|||.||+|.
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~ 666 (898)
T TIGR02103 587 QPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTETINYVSKHDNQTLWDA 666 (898)
T ss_pred CCcccccccchhhhhhhhhHHHHHHhhcCccccccccccccccccccccccCcCccccccCHHHheeeeeccCCccHHHH
Confidence 0122233443211 11 112477899999999999999999
Q ss_pred hhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCCCCCCC
Q 003977 565 VSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYG 644 (782)
Q Consensus 565 ~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~n~y~ 644 (782)
+.+....+. . ...+.|+.+++++++|++||||+|++|+|++++|.+++|+|+
T Consensus 667 l~~~~~~~~------------------------~----~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~nSY~ 718 (898)
T TIGR02103 667 ISYKAAAET------------------------P----SAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDRDSYD 718 (898)
T ss_pred HHhhCCCCC------------------------C----HHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCCCCCc
Confidence 976432110 0 123456678899999999999999999999999999999999
Q ss_pred CCCCCCccCCCccccc---------------------------------cchHHHHHHHHHHHHhcCCCCCCCCccccC-
Q 003977 645 HDTAINNFQWGQLETK---------------------------------KNSHYRFFSEVIKFRQSRRVFGREDFLNIN- 690 (782)
Q Consensus 645 ~~~~~~~~~W~~~~~~---------------------------------~~~l~~~~~~Li~lRk~~paL~~g~~~~~~- 690 (782)
+.+.+|.++|+..... -...++||++||+||+++|+||.++...+.
T Consensus 719 sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~~ 798 (898)
T TIGR02103 719 SGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVMK 798 (898)
T ss_pred CchhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHHh
Confidence 9999999999876421 146899999999999999999999876443
Q ss_pred cceeeccccCCCCCcEEEEEEEcCC----------CCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEecCCCCCCCCCCCC
Q 003977 691 DVTWHEDNWDNYDSKFLAFTLHDNN----------GADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPE 760 (782)
Q Consensus 691 ~~~~~~~~~~~~~~~vlaf~R~~~~----------~~~~lVv~N~~~~~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~~~~ 760 (782)
.+.|+... .....++|+|...+.. -+.++||+|.+.+.+++ +|.. .+..|.+...... ........
T Consensus 799 ~v~F~~~g-~~~~~g~i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~~~~~~-~~~~-~~~~~~l~~~~~~-~~d~~v~~ 874 (898)
T TIGR02103 799 RVDFRNTG-PDQIPGLIVMSIDDGGIQAGASLDPRYDGIVVIFNARPEEVTL-SPDF-AGTGLELHAVQQA-SGDESVAK 874 (898)
T ss_pred heEEeccC-CcCCCCEEEEEEcCCccccccccccccCeEEEEEcCCCccEEE-eccc-CCCcEEEEecccc-cCcccccc
Confidence 46776431 1234799999997641 14699999999999998 7764 3456886543221 11111111
Q ss_pred C-CCCCCceEEEcCcEEEEEEe
Q 003977 761 G-AAGTGSTYNLSPYSSILLEA 781 (782)
Q Consensus 761 ~-~~~~~~~i~l~p~s~~vl~~ 781 (782)
. ......+++|+|+|++||+.
T Consensus 875 ~~~~~~~~~~~vp~~s~~V~~~ 896 (898)
T TIGR02103 875 SVYSAANGTFTVPAWTTAVFVL 896 (898)
T ss_pred ceeeccCCEEEEcCcEEEEEEe
Confidence 1 11235689999999999974
No 7
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1.4e-90 Score=808.92 Aligned_cols=561 Identities=28% Similarity=0.474 Sum_probs=435.9
Q ss_pred ccCCCCCCCCccEEeCCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceE
Q 003977 103 KTSQGQAFPIGVSEVENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLY 182 (782)
Q Consensus 103 ~~~~~~~~~lGa~~~~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y 182 (782)
..+.| +|||++.++||+|+||||+|++|+|+++.+.. ...+...++|.+ ..+++|+++|+++ .+|..|
T Consensus 6 ~~~~~---~lG~~~~~~~~~F~vwaP~a~~V~l~~~~~~~-----~~~~~~~~~m~~---~~~gvw~~~i~~~-~~g~~Y 73 (605)
T TIGR02104 6 FYYDG---ELGAVYTPEKTVFRVWAPTATEVELLLYKSGE-----DGEPYKVVKMKR---GENGVWSAVLEGD-LHGYFY 73 (605)
T ss_pred cCCCC---CCccEEECCeeEEEEECCCCCEEEEEEEcCCC-----CCccceEEeccc---CCCCEEEEEECCC-CCCCEE
Confidence 34555 79999999999999999999999999986421 111334678854 3345999999985 589999
Q ss_pred EEEEecCCCCCCCccccCceeeeCccccccccccccCccccccccccccccC-CCCCCCCCCCCCCCCCCCCCeEEEEEe
Q 003977 183 GYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEF-ESLPFDWGDNYKLPNIPEKDLVIYEMN 261 (782)
Q Consensus 183 ~y~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~p~~~~~~~vIYei~ 261 (782)
+|+|++... ..+++||||+++...... +.+ ++. ...+++|..+..++..+++++||||||
T Consensus 74 ~y~v~~~~~---------~~~~~DPya~~~~~~~~~-------s~v---~d~~~~~~~~w~~~~~~~~~~~~~~vIYElh 134 (605)
T TIGR02104 74 TYQVCINGK---------WRETVDPYAKAVTVNGKR-------GAV---IDLERTNPEGWEKDHRPRLENPEDAIIYELH 134 (605)
T ss_pred EEEEEcCCC---------eEEEcCCCcceeccCCCc-------EEE---EcccccCccCcccccCCCCCChhHcEEEEEe
Confidence 999986431 247899999998654321 111 111 124678887654456678999999999
Q ss_pred cccccCCCCCCCCCCCCCCHHHHHhh-----------chHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCC
Q 003977 262 VRAFTGDESSGLDPEIRGSYLGLIQK-----------IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST 330 (782)
Q Consensus 262 v~~Ft~~~~~g~~~~~~G~~~gl~~~-----------LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~ 330 (782)
|++|+.++++++.. +|+|+|++++ |||||+||||+||||||+++.+..... + ....+|||++
T Consensus 135 v~~ft~~~~~~~~~--~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~---~--~~~~~wGY~~ 207 (605)
T TIGR02104 135 IRDFSIHENSGVKN--KGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEED---P--NNAYNWGYDP 207 (605)
T ss_pred cchhccCCCCCcCC--CCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCccccccccccc---C--CCCCCCCCCC
Confidence 99999988877643 6999998876 999999999999999999985432110 1 1135699999
Q ss_pred CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCc
Q 003977 331 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNY 410 (782)
Q Consensus 331 ~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~ 410 (782)
.+||+|+++||++|..|..+++|||+||++||++||+||||||+|||+... +. .|++..+.+||..++.+.+.++
T Consensus 208 ~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~--~~---~f~~~~~~~~~~~~~~g~~~~~ 282 (605)
T TIGR02104 208 LNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSRE--ES---PFEKTVPGYYYRYNEDGTLSNG 282 (605)
T ss_pred ccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCC--CC---cccCCCCCeeEEECCCCCccCC
Confidence 999999999999888888889999999999999999999999999998532 11 3555555566666788888899
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHh--ccccCCceEEecccCC
Q 003977 411 AGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK--DAILSRCKIIAEPWDC 488 (782)
Q Consensus 411 ~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~--~~~~~~~~ligE~w~~ 488 (782)
++|++++|+++|+||++|+++++||++||||||||||+|..++.+ +++++.. ++..|+++||||+|+.
T Consensus 283 ~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~----------~~~~~~~~~~~~~p~~~ligE~w~~ 352 (605)
T TIGR02104 283 TGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIE----------TMNEIRKALNKIDPNILLYGEGWDL 352 (605)
T ss_pred CcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHH----------HHHHHHHHHHhhCCCeEEEEccCCC
Confidence 999999999999999999999999999999999999999888544 4555544 4578999999999987
Q ss_pred CCcccc------CCCCCcccchhhchhHHHHHH---------HHHhCCCCchhhHHHHhhcCccccc--cCCCCCcceEE
Q 003977 489 RGLYLV------GKFPNWDRWAEWNGKYRDDLR---------KFIKGDPGMKGILATRISGSSDLYR--VNKRKPYHSIN 551 (782)
Q Consensus 489 ~~~~~~------g~~~~~~~~~~~n~~f~~~i~---------~~~~g~~~~~~~~~~~l~~~~~~~~--~~~~~p~~~vn 551 (782)
+..... +....+.+++.||+.|++.++ .|+.|..+....++..+.++...+. .....|..+||
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vn 432 (605)
T TIGR02104 353 GTPLPPEQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVKPSALDPSQSIN 432 (605)
T ss_pred CCCcchhhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccccccCChhheEE
Confidence 632211 111122356899999999998 4555555556677777777654441 23457789999
Q ss_pred EeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEecccc
Q 003977 552 FIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDE 631 (782)
Q Consensus 552 fi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE 631 (782)
|++|||++|+.|++.+..+.+ . ...+.+++|++++++||+|||||||||||
T Consensus 433 yl~~HD~~~l~d~l~~~~~~~-------------------------~----~~~~~~r~rla~alllts~GiP~iy~GdE 483 (605)
T TIGR02104 433 YVECHDNHTLWDKLSLANPDE-------------------------T----EEQLKKRQKLATAILLLSQGIPFLHAGQE 483 (605)
T ss_pred EEEecCCCCHHHHHHhhCCCC-------------------------C----HHHHHHHHHHHHHHHHHcCCCceeecchh
Confidence 999999999999987643210 0 12356778999999999999999999999
Q ss_pred ccCccCCCCCCCCCCCCCCccCCCccccccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEE
Q 003977 632 YGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTL 711 (782)
Q Consensus 632 ~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R 711 (782)
+|+++.+++|+|++++++++|+|+..+. ..++++++|+||+|||++|+|+.+++.. +.|+...+...++++++|.|
T Consensus 484 ~g~s~~g~~n~y~~~d~~~~ldW~~~~~-~~~~~~~~~~Li~lRk~~pal~~~~~~~---i~~~~~~~~~~~~~vla~~r 559 (605)
T TIGR02104 484 FMRTKQGDENSYNSPDSINQLDWDRKAT-FKDDVNYIKGLIALRKAHPAFRLSSAED---IRKHLEFLPAEPSGVIAYRL 559 (605)
T ss_pred hhccCCCCCCCccCCCcccccCcccccc-chHHHHHHHHHHHHHhhCccccCCChhh---hcceeEEccCCCCcEEEEEE
Confidence 9999999999999999999999997553 3489999999999999999999988643 23332212223568999999
Q ss_pred EcCCC----CeEEEEEeCCCCcEEEEcCCCCCCCCeEEEecCCCC
Q 003977 712 HDNNG----ADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLE 752 (782)
Q Consensus 712 ~~~~~----~~~lVv~N~~~~~~~~~Lp~~~~~~~w~~l~~t~~~ 752 (782)
....+ +.++|++|++.+++++.||. .+.|+.++++...
T Consensus 560 ~~~~~~~~~~~llVv~N~s~~~~~v~lp~---~~~w~~~~~~~~~ 601 (605)
T TIGR02104 560 KDHANGDPWKDIIVIHNANPEPVDIQLPS---DGTWNVVVDNKNA 601 (605)
T ss_pred eCCcCCCCcCeEEEEEeCCCCCeEEECCC---CCCEEEEECCCcC
Confidence 86422 47999999999999999985 3689999998753
No 8
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=1.3e-89 Score=820.83 Aligned_cols=616 Identities=25% Similarity=0.386 Sum_probs=442.8
Q ss_pred cCCcccCCCCCCCCccEEeCCc-EEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCC--
Q 003977 99 TLPLKTSQGQAFPIGVSEVENG-INFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDL-- 175 (782)
Q Consensus 99 ~~~~~~~~~~~~~lGa~~~~~g-~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~-- 175 (782)
.+..+.+.| +|||++.++| ++|+||||+|++|+|+||... ++ .....+++|.+ ...| ||+++|+++
T Consensus 309 ~d~~y~y~g---~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~----~~-~~~~~~~~m~~--~~~G-vW~v~v~~~~~ 377 (1111)
T TIGR02102 309 KDEMYAYDG---KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKD----DQ-DKVVGTVELKK--GDRG-VWEVQLTKENT 377 (1111)
T ss_pred hhhhhccCC---CCCCEEecCCCEEEEEECCCCCEEEEEEEeCC----CC-CCceeeEeccc--CCCC-EEEEEECCccc
Confidence 344444444 6999998776 899999999999999999753 12 12234678853 3344 999999952
Q ss_pred ---CCCCceEEEEEecCCCCCCCccccCceeeeCccccccccccc-cCccc--cccccccccccCCCCCCCCCCCCCCCC
Q 003977 176 ---PRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRH-FGDAS--AKLSKFLGTYEFESLPFDWGDNYKLPN 249 (782)
Q Consensus 176 ---~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~w~~~~~~p~ 249 (782)
+++|++|+|+|++.. +..+++||||+++..... ..... ...+.+..........++|.+ .++.
T Consensus 378 G~~d~~G~~Y~Y~V~~~~---------~~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~--~~~~ 446 (1111)
T TIGR02102 378 GIDSLTGYYYHYEITRGG---------DKVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAK--IENF 446 (1111)
T ss_pred CcccCCCceEEEEEECCC---------ceEEEeChhheEEeccCcccccccCCCCceEEEcCcccCcccccccc--cccc
Confidence 357999999998632 346889999999864221 10000 001111110001122356653 3344
Q ss_pred CCCCCeEEEEEecccccCCCCCCCCC-CCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhh---cCCC--CCCCC
Q 003977 250 IPEKDLVIYEMNVRAFTGDESSGLDP-EIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQR---RRNP--RDHMV 323 (782)
Q Consensus 250 ~~~~~~vIYei~v~~Ft~~~~~g~~~-~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~---~~~~--~~~~~ 323 (782)
.+++++||||+|||+|+.+.+++.+. ..+|+|+||+++|||||+|||||||||||+++...++.. ...+ .....
T Consensus 447 ~~~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ 526 (1111)
T TIGR02102 447 KKREDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTN 526 (1111)
T ss_pred CCccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccc
Confidence 56899999999999999765544432 246999999999999999999999999999864322111 0000 00013
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCC
Q 003977 324 NTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDG 403 (782)
Q Consensus 324 ~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~ 403 (782)
++|||+|.+||+|+++||++|.+|..|++|||+||++||++||+||||||||||+. .+ .|+++++.+|++.+.
T Consensus 527 ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~---~~----~f~~~~p~Yy~~~~~ 599 (1111)
T TIGR02102 527 YNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAK---VY----IFEDLEPNYYHFMDA 599 (1111)
T ss_pred cccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccc---cc----cccccCCCceEeeCC
Confidence 56999999999999999999889999999999999999999999999999999986 22 355666666666666
Q ss_pred CCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHh--ccccCCceE
Q 003977 404 TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK--DAILSRCKI 481 (782)
Q Consensus 404 ~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~--~~~~~~~~l 481 (782)
+|...+. .|+++++++|++||++|+|+++||++||||||||||+|+.+..+ +++.+.. +++.|+++|
T Consensus 600 ~G~~~~~-~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~----------~~~~~~~~l~~~dP~~~l 668 (1111)
T TIGR02102 600 DGTPRTS-FGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAA----------SIEIAYKEAKAINPNIIM 668 (1111)
T ss_pred CCCcccc-cCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHH----------HHHHHHHHHHHhCcCEEE
Confidence 6665443 34789999999999999999999999999999999999877544 2333222 246789999
Q ss_pred EecccCCC---CccccCCCC-CcccchhhchhHHHHHHHHHhCC-------------CCchhhHHHHhhcCccccccCCC
Q 003977 482 IAEPWDCR---GLYLVGKFP-NWDRWAEWNGKYRDDLRKFIKGD-------------PGMKGILATRISGSSDLYRVNKR 544 (782)
Q Consensus 482 igE~w~~~---~~~~~g~~~-~~~~~~~~n~~f~~~i~~~~~g~-------------~~~~~~~~~~l~~~~~~~~~~~~ 544 (782)
|||+|+.. ..+..+.++ .+..+...+..|++.+|++++|. .+....+...+.++...|. ..
T Consensus 669 iGE~W~~~~g~~~~~~~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~~--~~ 746 (1111)
T TIGR02102 669 IGEGWRTYAGDEGDPVQAADQDWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNFE--AD 746 (1111)
T ss_pred EEecccccCCCCcccccccchhhHhcCCcccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccccc--cC
Confidence 99999862 122222222 12111112245666666666643 2333456666776655442 35
Q ss_pred CCcceEEEeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCee
Q 003977 545 KPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTP 624 (782)
Q Consensus 545 ~p~~~vnfi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP 624 (782)
.|.++||||+|||++||+|++++..+++.++++. +. ...++.|++++++||+||||
T Consensus 747 ~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~--------------------~~----~~~~r~rla~~llllSQGiP 802 (1111)
T TIGR02102 747 SPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAEN--------------------QE----EIHRRIRLGNLMVLTSQGTA 802 (1111)
T ss_pred CcccEEEEEecCCCCchHhhhhhccccCcccccc--------------------hH----HHHHHHHHHHHHHHHhCcHh
Confidence 7889999999999999999999998887765531 01 12456678888999999999
Q ss_pred eEeccccccCccCCCCC----------------------------------CCCCCCCCCccCCCcccccc-----chHH
Q 003977 625 MMLMGDEYGHTRYGNNN----------------------------------SYGHDTAINNFQWGQLETKK-----NSHY 665 (782)
Q Consensus 625 ~iy~GdE~g~~~~g~~n----------------------------------~y~~~~~~~~~~W~~~~~~~-----~~l~ 665 (782)
|||+||||++++.|++| +|++++.+|+++|++..... ..++
T Consensus 803 fi~aGqEf~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~ 882 (1111)
T TIGR02102 803 FIHSGQEYGRTKQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTR 882 (1111)
T ss_pred hhhcchhhhcccCCCcccccccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHH
Confidence 99999999999999844 55557899999999875431 4899
Q ss_pred HHHHHHHHHHhcCCCCCCCCcccc-Ccceeecc----ccCCCCCcEEEEEEEcCCCCeEEEEEeCCCCcEEEEcCCC-CC
Q 003977 666 RFFSEVIKFRQSRRVFGREDFLNI-NDVTWHED----NWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPP-PP 739 (782)
Q Consensus 666 ~~~~~Li~lRk~~paL~~g~~~~~-~~~~~~~~----~~~~~~~~vlaf~R~~~~~~~~lVv~N~~~~~~~~~Lp~~-~~ 739 (782)
+|+|+||+|||+||+|+.+++..+ ..+.|+.. .| ...+.+++|...+..++.++|++|.+.+++++.||.. +.
T Consensus 883 ~y~~~LI~lRk~~~~fr~~~~~~i~~~v~~~~~~g~~~~-~~~~~~ia~~~~~~~~~~~~V~~Na~~~~~~~~lp~~~~~ 961 (1111)
T TIGR02102 883 DYTAGLIELRRSTDAFRLGSKALVDRKVTLITIPGQNEI-EEEDLVVAYQIVATNGDIYAVFVNADDKARTLTLGEDYAH 961 (1111)
T ss_pred HHHHHHHHHHhcCccccccchhhhcCcEEEECCCCCccc-ccCCcEEEEEEecCCCCeEEEEECCCCCCEEEECCCCccc
Confidence 999999999999999999987544 35778743 24 2347899999876545689999999999999999972 22
Q ss_pred CCCeEEEecCCCCCCCCCC-CCCCCCCCceEEEcCcEEEEEEe
Q 003977 740 KRQWFRVVDTNLESPDDIV-PEGAAGTGSTYNLSPYSSILLEA 781 (782)
Q Consensus 740 ~~~w~~l~~t~~~~~~~~~-~~~~~~~~~~i~l~p~s~~vl~~ 781 (782)
...|.++++........+. ..+.......++|+|+|++||..
T Consensus 962 ~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~s~~V~~~ 1004 (1111)
T TIGR02102 962 LTVGEVVVDAEQAGVTGIAEPKGVELTAEGLKLDPLTAAVVRV 1004 (1111)
T ss_pred ccceEEEEcccccCcccccccccccccCCeEEEcCcEEEEEEe
Confidence 3479999988654433322 22233345689999999999975
No 9
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-80 Score=686.36 Aligned_cols=625 Identities=33% Similarity=0.536 Sum_probs=505.8
Q ss_pred CCcccCCCCCCCCccEEeCCc-EEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeC-CCC
Q 003977 100 LPLKTSQGQAFPIGVSEVENG-INFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIED-LPR 177 (782)
Q Consensus 100 ~~~~~~~~~~~~lGa~~~~~g-~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~-~~~ 177 (782)
..+..+...+.+||+|..+++ +.|..|||.|+.|+|++++|+ |+.. ...+.+ ++..| +|++.+|. .+.
T Consensus 93 ~~l~~~~~~y~~~g~h~~~d~~v~~~ewaP~a~~~s~~gd~n~-----W~~~---~~~~~~-k~~~g-~w~i~l~~~~~~ 162 (757)
T KOG0470|consen 93 GGLSAFSRGYEPLGTHRTPDGRVDFTEWAPLAEAVSLIGDFNN-----WNPS---SNELKP-KDDLG-VWEIDLPPKVNG 162 (757)
T ss_pred CChhhhhccccccceeccCCCceeeeeecccccccccccccCC-----CCCc---ccccCc-ccccc-eeEEecCcccCC
Confidence 455555666779999998877 999999999999999999883 5533 334432 46678 99999983 122
Q ss_pred CCceEEEEEecCCCCCCCccccCceeeeCcccccccccccc---CccccccccccccccCCCCCCCCCCCCCCCCCCCCC
Q 003977 178 SEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHF---GDASAKLSKFLGTYEFESLPFDWGDNYKLPNIPEKD 254 (782)
Q Consensus 178 ~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~w~~~~~~p~~~~~~ 254 (782)
.+..+.+.+.. ....+||+..+.....| ++..+...++.+.+..+.++++|..+..+|+.|.++
T Consensus 163 s~~v~H~s~~~-------------~~~~~p~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~s 229 (757)
T KOG0470|consen 163 SGAVPHGSVSK-------------IHLSTPYGETCKRIPAWATYVDQEGEGPQYYGIYWDPSPEFDWGFKHSRPKIPESS 229 (757)
T ss_pred CccccccceeE-------------EEeecCCcceeeccChHhhcccCCCcccceeeccCCCCCcccccccCCCCCCChhh
Confidence 33344333321 23344444443333322 223333445556666667789999888888888789
Q ss_pred eEEEEEecccccCCCCCCCCCCCCCCHHHHHhh-chHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCC
Q 003977 255 LVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINF 333 (782)
Q Consensus 255 ~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~-LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy 333 (782)
++|||+|||+|+.++++..+ .+| |+++++| ||+||+||+|||+||||+|++ +++.+|||.|++|
T Consensus 230 L~IYE~HVrgfS~~E~~v~~--~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~------------~~~~s~GY~~~nF 294 (757)
T KOG0470|consen 230 LRIYELHVRGFSSHESKVNT--RGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFG------------HYYASWGYQVTNF 294 (757)
T ss_pred eEEEEEeeccccCCCCcccc--ccc-hhhhhhhhhhHHHHhCccceEEeehhhhh------------hhhhccCcceeEe
Confidence 99999999999998877654 345 9999999 999999999999999999993 3467999999999
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCC
Q 003977 334 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGC 413 (782)
Q Consensus 334 ~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~ 413 (782)
|+|.++|||... |.+ |.|||+||++||..||.||||||+||++. +...+.. .|+|+++..||+..+ ...+++.|
T Consensus 295 FapssrYgt~~s-~~r-i~efK~lVd~aHs~GI~VlLDVV~sHaa~-n~~d~l~-~fdGid~~~Yf~~~~--r~~h~~~~ 368 (757)
T KOG0470|consen 295 FAPSSRYGTPES-PCR-INEFKELVDKAHSLGIEVLLDVVHSHAAK-NSKDGLN-MFDGIDNSVYFHSGP--RGYHNSWC 368 (757)
T ss_pred ecccccccCCCc-ccc-hHHHHHHHHHHhhCCcEEehhhhhhhccc-CcCCcch-hccCcCCceEEEeCC--cccccccc
Confidence 999999999744 555 99999999999999999999999999998 3334443 699999999999887 55677889
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEcccccccc-----------------CCCCCCCCChHHHH-HHHhccc
Q 003977 414 GNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR-----------------GTDGSPLNAPPLIR-AIAKDAI 475 (782)
Q Consensus 414 ~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~-----------------~~~g~~~~~~~~l~-~i~~~~~ 475 (782)
++.+|+++|+|+++|+++++||+.||+|||||||.++.|.+ ...|.+.+.++++. .++.|.+
T Consensus 369 ~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~ 448 (757)
T KOG0470|consen 369 SRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDALVYLMLANDPL 448 (757)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCcccccHHHHHHhhcchh
Confidence 99999999999999999999999999999999998887766 33455677888898 7777888
Q ss_pred cCCce-EEecccCCCCccccCCCCCcccchhhchhHHHHHHHHHhCCCCchh-hHHHHhhcCccccccCCCCCcceEEEe
Q 003977 476 LSRCK-IIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKG-ILATRISGSSDLYRVNKRKPYHSINFI 553 (782)
Q Consensus 476 ~~~~~-ligE~w~~~~~~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~p~~~vnfi 553 (782)
+..+. +|++.|+.++++..|.+|.|.+|..||..|+.+++.+.++...+.. .+++.++++...+..+.+.|..++||+
T Consensus 449 l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN~R~~e~~v~y~ 528 (757)
T KOG0470|consen 449 LGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTNRRYPEKSVNYA 528 (757)
T ss_pred hhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeeccccccceeeee
Confidence 88888 9999999999999999999999999999999999999998877665 788999999888888889999999999
Q ss_pred eccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEecccccc
Q 003977 554 IAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYG 633 (782)
Q Consensus 554 ~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g 633 (782)
++||+.++.|+++++.+ +.+++.+|+|+.+|.+....+.+.+.++++.-+..+++++|+||+|||+|||
T Consensus 529 ~~HDq~~v~d~~T~af~-----------~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfG 597 (757)
T KOG0470|consen 529 ESHDQALVGDLVTIAFK-----------WLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFG 597 (757)
T ss_pred eccCCccccceeeecch-----------hhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccC
Confidence 99999999998877654 3567899999999999999999988888888888889999999999999999
Q ss_pred CccCCCCCCCCCCCCCCccCCCccccccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeecc-----ccC--CCCCcE
Q 003977 634 HTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHED-----NWD--NYDSKF 706 (782)
Q Consensus 634 ~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~-----~~~--~~~~~v 706 (782)
.++.++.+.|+.+...+..+|...+.....++++.++|+.+|+++-.|-.........+.|+.. .|. ...+.+
T Consensus 598 h~e~~d~~~~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~~~i~fer~~~~ 677 (757)
T KOG0470|consen 598 HPEWLDFPRYGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEADEVIVFERGPLL 677 (757)
T ss_pred CccccCCCcccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhhheeeeccCCeE
Confidence 9999999999999998888996656566689999999999999998886666555455666621 121 122556
Q ss_pred EEEEEEcCC-CCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCceEEEcCcEEEEE
Q 003977 707 LAFTLHDNN-GADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILL 779 (782)
Q Consensus 707 laf~R~~~~-~~~~lVv~N~~~~~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~~vl 779 (782)
++|..++.. +..+.|.+|.......+-+|..|.++.|..|.|+....+.++..++.......|...++++++.
T Consensus 678 ~vfn~h~~~s~~d~~vg~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~g~~~~l~VY~~~~~a~vl~ 751 (757)
T KOG0470|consen 678 FVFNFHDSNSYIDYRVGFNAPGKYTIVLNSDRPKGGGWNRLDDTALFFPYDFRSEGRPVSLQVYIPSRTATVLA 751 (757)
T ss_pred EEEEecCCCCCceeEEEecCCCceEEEECCCCCCCCCccccccccccCccccccCCeeeeEEEEeccCcceEee
Confidence 666665543 3689999999999899999998889999999999998888887777766666677777775443
No 10
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.7e-74 Score=665.49 Aligned_cols=557 Identities=23% Similarity=0.396 Sum_probs=397.0
Q ss_pred CCCCccEEe----CCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEE
Q 003977 109 AFPIGVSEV----ENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGY 184 (782)
Q Consensus 109 ~~~lGa~~~----~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y 184 (782)
+.-||||.. .+||+|+||||+|++|+|+++++. |+. ..++|.. . .+++|+++||++. .|..|+|
T Consensus 124 y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~-----Wdg---~~~pM~~--~-~~GVWelfipg~~-~G~~YKY 191 (730)
T PRK12568 124 RRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNG-----WDV---RRHPMRQ--R-IGGFWELFLPRVE-AGARYKY 191 (730)
T ss_pred HHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCC-----CCc---cceeccc--C-CCCEEEEEECCCC-CCCEEEE
Confidence 456999994 469999999999999999998873 543 2567743 3 4449999999965 7999999
Q ss_pred EEecCCCCCCCccccCceeeeCccccccccccccCccccccccccccccCCCCCCCCCCCCC----CCCCCCCCeEEEEE
Q 003977 185 RVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYK----LPNIPEKDLVIYEM 260 (782)
Q Consensus 185 ~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~----~p~~~~~~~vIYei 260 (782)
+|.+.. |. ...++||||+.++.++.. ++.+ .+..+|+|+++.+ .+....++++||||
T Consensus 192 eI~~~~----G~----~~~k~DPYA~~~e~~p~~------asvV-----~~~~~~~W~d~~W~~~r~~~~~~~~~~IYEv 252 (730)
T PRK12568 192 AITAAD----GR----VLLKADPVARQTELPPAT------ASVV-----PSAAAFAWTDAAWMARRDPAAVPAPLSIYEV 252 (730)
T ss_pred EEEcCC----Ce----EeecCCCcceEeecCCCC------CeEE-----cCCCCCCCCChhhhhcccccCCCCCcEEEEE
Confidence 998643 21 135799999998755422 2222 2234577876421 23346789999999
Q ss_pred ecccccCCCCCCCCCCCCCCHHHHHhh-chHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCC
Q 003977 261 NVRAFTGDESSGLDPEIRGSYLGLIQK-IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 339 (782)
Q Consensus 261 ~v~~Ft~~~~~g~~~~~~G~~~gl~~~-LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~ 339 (782)
|+++|+.+++++ .++|++++++ |||||+||||+||||||+++ |. .++|||++.+||+|+++
T Consensus 253 Hvgsf~~~~~~~-----~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~----------~~---~~~wGY~~~~~~a~~~~ 314 (730)
T PRK12568 253 HAASWRRDGHNQ-----PLDWPTLAEQLIPYVQQLGFTHIELLPITEH----------PF---GGSWGYQPLGLYAPTAR 314 (730)
T ss_pred EhHHhcCCCCCC-----CCCHHHHHHHHHHHHHHcCCCEEEECccccC----------CC---CCCCCCCCCcCCccCcc
Confidence 999999764332 3899999998 59999999999999999998 31 36899999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCC-CCCccCcCCCCCCCC
Q 003977 340 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDG-TGQLLNYAGCGNTLN 418 (782)
Q Consensus 340 yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~-~g~~~~~~~~~~~ln 418 (782)
||+. +|||+||++||++||+||||+|+||++.. .+.+ ..|++. ..|...++ .+...+|.. -.+|
T Consensus 315 ~G~~--------~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d--~~~l-~~fdg~--~~Ye~~d~~~g~~~~W~~--~~~N 379 (730)
T PRK12568 315 HGSP--------DGFAQFVDACHRAGIGVILDWVSAHFPDD--AHGL-AQFDGA--ALYEHADPREGMHRDWNT--LIYN 379 (730)
T ss_pred cCCH--------HHHHHHHHHHHHCCCEEEEEeccccCCcc--cccc-ccCCCc--cccccCCCcCCccCCCCC--eecc
Confidence 9997 99999999999999999999999999973 2322 245442 23333333 233333322 2589
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccEEEEccc-cccccCC---CCCC----------CCChHHHHHHHh--ccccCCceEE
Q 003977 419 CNHPVVMELILDSLRHWVVEYHVDGFRFDLA-SVLCRGT---DGSP----------LNAPPLIRAIAK--DAILSRCKII 482 (782)
Q Consensus 419 ~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a-~~l~~~~---~g~~----------~~~~~~l~~i~~--~~~~~~~~li 482 (782)
+.+|+||++|+++++||+++|||||||+|++ .+++.+. .|.| .++..++++++. ....|++++|
T Consensus 380 ~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~I 459 (730)
T PRK12568 380 YGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTI 459 (730)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999999999999999999999999999965 5555442 1222 234568888876 4567999999
Q ss_pred ecccCCCC-c---cccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccCCCCCcceEEEeeccCC
Q 003977 483 AEPWDCRG-L---YLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDG 558 (782)
Q Consensus 483 gE~w~~~~-~---~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~ 558 (782)
||.+..-. . ...|+ ......||+.|++++.+|++.++..+......|..+.. |. ....+.+..|||+
T Consensus 460 AEest~~p~vt~p~~~gG---lGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~~-y~-----~~e~fvlp~SHDE 530 (730)
T PRK12568 460 AEESTAWPGVTAPISDGG---LGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGLV-YA-----FSERFVLPLSHDE 530 (730)
T ss_pred EEcCCCCccccccccCCC---CCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhhh-hh-----hhccEeccCCCcc
Confidence 99654321 0 11111 11238999999999999999988776555544543321 11 0123346689998
Q ss_pred CCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCC
Q 003977 559 FTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYG 638 (782)
Q Consensus 559 ~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g 638 (782)
.-. .|...... .+|+. ..+...+|++++++|+.||.||||||+|||+.++.
T Consensus 531 vvh-------gk~sl~~k----------------mpGd~------~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew 581 (730)
T PRK12568 531 VVH-------GTGGLLGQ----------------MPGDD------WRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADW 581 (730)
T ss_pred ccc-------Cchhhhhc----------------CCCCH------HHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccc
Confidence 421 11111111 12221 12345678899999999999999999999998754
Q ss_pred CCCCCCCCCCCCccCCCcccc-ccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEEcCC--
Q 003977 639 NNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN-- 715 (782)
Q Consensus 639 ~~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~-- 715 (782)
+ .+ ..++|..++. .+..+.+++|+|++||+++|+|...++... .++|+.. .+.+++|++|.|+...
T Consensus 582 ~-----~~---~~ldW~ll~~~~h~~~~~~~~dLn~ly~~~paL~~~d~~~~-gf~wi~~--~d~~~sv~af~R~~~~~~ 650 (730)
T PRK12568 582 N-----HD---QSLDWHLLDGARHRGMQQLVGDLNAALRRTPALYRGTHRAD-GFDWSVA--DDARNSVLAFIRHDPDGG 650 (730)
T ss_pred c-----CC---CCccccccCChhHHHHHHHHHHHHHHHHhChhhhcccCCCC-CeEEEeC--CCCCCcEEEEEEecCCCC
Confidence 4 22 4579998663 345899999999999999999998877543 6788854 2567889999998753
Q ss_pred CCeEEEEEeCCCCc---EEEEcCCCCCCCCeEEEecCCCCCCC--CC------CCCCCC----CCCceEEEcCcEEEEEE
Q 003977 716 GADIYLAFNAHDFF---VKVSLPPPPPKRQWFRVVDTNLESPD--DI------VPEGAA----GTGSTYNLSPYSSILLE 780 (782)
Q Consensus 716 ~~~~lVv~N~~~~~---~~~~Lp~~~~~~~w~~l~~t~~~~~~--~~------~~~~~~----~~~~~i~l~p~s~~vl~ 780 (782)
++.++||+|++..+ ..+.+|. .+.|++++||+...-. .. ..+... ..+..|+|||.+++||+
T Consensus 651 ~~~v~vV~Nft~~~~~~Y~ig~p~---~G~~~eilNsd~~~ygG~~~~n~~~~~~~~~~~~g~~~s~~i~lppl~~~~~~ 727 (730)
T PRK12568 651 GVPLLAVSNLTPQPHHDYRVGVPR---AGGWREILNTDSAHYGGSNLGNSGRLATEPTGMHGHAQSLRLTLPPLATIYLQ 727 (730)
T ss_pred CCeEEEEECCCCCCccCeEECCCC---CCeEEEEEcCchhhhCCCCcCCCCceeecccccCCCccEEEEEeCCCEEEEEE
Confidence 35699999999764 4455665 6899999999854311 00 011101 12347999999999998
Q ss_pred e
Q 003977 781 A 781 (782)
Q Consensus 781 ~ 781 (782)
.
T Consensus 728 ~ 728 (730)
T PRK12568 728 A 728 (730)
T ss_pred E
Confidence 5
No 11
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3e-74 Score=666.70 Aligned_cols=559 Identities=21% Similarity=0.361 Sum_probs=383.9
Q ss_pred CCCccEEeCC----cEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEE
Q 003977 110 FPIGVSEVEN----GINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYR 185 (782)
Q Consensus 110 ~~lGa~~~~~----g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~ 185 (782)
..||||.... |++|+||||+|++|+|+++++. |+. ..++|.+ ...| +|+++||++ .+|..|+|+
T Consensus 25 ~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~-----w~~---~~~pM~~--~~~G-vW~~~vpg~-~~g~~Yky~ 92 (639)
T PRK14706 25 HLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFND-----WNG---FDHPMQR--LDFG-FWGAFVPGA-RPGQRYKFR 92 (639)
T ss_pred HhcCccCccCCCcccEEEEEECCCCCEEEEEEecCC-----ccc---ccccccc--cCCC-EEEEEECCC-CCCCEEEEE
Confidence 4799998653 8999999999999999998873 543 2456643 2345 999999985 479999999
Q ss_pred EecCCCCCCCccccCceeeeCccccccccccccCccccccccccccccCCCCCCCCCCCCCCC---CCCCCCeEEEEEec
Q 003977 186 VDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLP---NIPEKDLVIYEMNV 262 (782)
Q Consensus 186 i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~p---~~~~~~~vIYei~v 262 (782)
|++.. |.. ..+.||||+.++.++.. .+.+ ....|+|.++.++. ....++++||||||
T Consensus 93 I~~~~----g~~----~~~~DPYa~~~~~~~~~------~svv------~~~~~~w~d~~w~~~~~~~~~~~~~IYE~Hv 152 (639)
T PRK14706 93 VTGAA----GQT----VDKMDPYGSFFEVRPNT------ASII------WEDRFEWTDTRWMSSRTAGFDQPISIYEVHV 152 (639)
T ss_pred EECCC----CCE----EeccCcceEEEecCCCC------ceEE------CCCCCCCCCcccccccCCccCCCcEEEEEeh
Confidence 98743 222 34699999998654321 1211 12358898654321 11235699999999
Q ss_pred ccccCCCCCCCCCCCCCCHHHHHhhc-hHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCC
Q 003977 263 RAFTGDESSGLDPEIRGSYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYA 341 (782)
Q Consensus 263 ~~Ft~~~~~g~~~~~~G~~~gl~~~L-dyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yG 341 (782)
++|+..+.. ..|+|++++++| +|||+||||||+||||+++ |. .++|||++.+||+|+++||
T Consensus 153 g~f~~~~~g-----~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~----------~~---~~~wGY~~~~~~~~~~~~g 214 (639)
T PRK14706 153 GSWARRDDG-----WFLNYRELAHRLGEYVTYMGYTHVELLGVMEH----------PF---DGSWGYQVTGYYAPTSRLG 214 (639)
T ss_pred hhcccCCCC-----CccCHHHHHHHHHHHHHHcCCCEEEccchhcC----------CC---CCCCCcCcccccccccccC
Confidence 999865321 138999999997 9999999999999999997 31 4689999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCC-CCccCcCCCCCCCCCC
Q 003977 342 AGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGT-GQLLNYAGCGNTLNCN 420 (782)
Q Consensus 342 t~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~-g~~~~~~~~~~~ln~~ 420 (782)
|. +|||+||++||++||+||||+|+||++.+ +..+..+++. +.|+..++. +...+|.. ..+|+.
T Consensus 215 ~~--------~~~~~lv~~~H~~gi~VilD~v~nH~~~~---~~~l~~~dg~--~~y~~~~~~~g~~~~w~~--~~~~~~ 279 (639)
T PRK14706 215 TP--------EDFKYLVNHLHGLGIGVILDWVPGHFPTD---ESGLAHFDGG--PLYEYADPRKGYHYDWNT--YIFDYG 279 (639)
T ss_pred CH--------HHHHHHHHHHHHCCCEEEEEecccccCcc---hhhhhccCCC--cceeccCCcCCcCCCCCC--cccCCC
Confidence 97 99999999999999999999999999873 2233344432 334333332 33333322 248999
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEEccccc-cccCCCC-----------CCCCChHHHHHHHh--ccccCCceEEeccc
Q 003977 421 HPVVMELILDSLRHWVVEYHVDGFRFDLASV-LCRGTDG-----------SPLNAPPLIRAIAK--DAILSRCKIIAEPW 486 (782)
Q Consensus 421 ~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~-l~~~~~g-----------~~~~~~~~l~~i~~--~~~~~~~~ligE~w 486 (782)
+|+||++|+++++||++||||||||||++.. ++.+... ...++..++++++. ....|++++|||.|
T Consensus 280 ~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~ 359 (639)
T PRK14706 280 RNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEES 359 (639)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 9999999999999999999999999997554 4444321 12335678888876 34578999999988
Q ss_pred CCCCccccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccCCCCCcceEEEeeccCCCCchhhhh
Q 003977 487 DCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVS 566 (782)
Q Consensus 487 ~~~~~~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d~~~ 566 (782)
..-..............+.||+.|++.+.+++..++.........+..+ .+|. ......|++|||+.+......
T Consensus 360 ~~~~~v~~~~~~G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~~-~~y~-----~~e~~il~~SHDev~~~k~sl 433 (639)
T PRK14706 360 TSFPGVTVPTPYGLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTFF-NVYR-----TSENYVLAISHDEVVHLKKSM 433 (639)
T ss_pred CCCcCcccccCCCCccccEeccHHHHHHHHHhccCchhhhhchhccchh-hhhh-----ccccEecCCCCccccCCccch
Confidence 6421110000001122389999999999998876654432211111111 1111 011223679999865321100
Q ss_pred hccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCCCCCCCCC
Q 003977 567 YNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHD 646 (782)
Q Consensus 567 ~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~n~y~~~ 646 (782)
.. .. .|. ...+..++|++++++||+||+||||||+|+|+.+. ++
T Consensus 434 ~~----k~-------------------~g~------~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~e-----w~-- 477 (639)
T PRK14706 434 VM----KM-------------------PGD------WYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTE-----WN-- 477 (639)
T ss_pred Hh----Hc-------------------CCC------HHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCC-----CC--
Confidence 00 00 011 01124568888999999999999999999997543 22
Q ss_pred CCCCccCCCcccc-ccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEEcCC-CCeEEEEEe
Q 003977 647 TAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN-GADIYLAFN 724 (782)
Q Consensus 647 ~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~-~~~~lVv~N 724 (782)
...+|+|...+. ....+.+|+|+||+||+++|+|+.+++... .+.|+.. .+.+++|+||.|...+ ++.++||+|
T Consensus 478 -~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~gd~~~~-~f~wi~~--~d~~~~VlaF~R~~~~~~~~vlvV~N 553 (639)
T PRK14706 478 -HDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRGDKREE-GLYWVSA--DDTDNSVYAYVRRDSESGAWSLAVAN 553 (639)
T ss_pred -cccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhCCCCCC-CeEEEEe--ecCCCCEEEEEEecCCCCeeEEEEEe
Confidence 346789987652 234799999999999999999998886532 4566532 2456789999998763 245999999
Q ss_pred CCCC---cEEEEcCCCCCCCCeEEEecCCCCCCCCC-------CCCCC----CCCCceEEEcCcEEEEEEeC
Q 003977 725 AHDF---FVKVSLPPPPPKRQWFRVVDTNLESPDDI-------VPEGA----AGTGSTYNLSPYSSILLEAK 782 (782)
Q Consensus 725 ~~~~---~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~-------~~~~~----~~~~~~i~l~p~s~~vl~~k 782 (782)
++.. ...+.+|. .+.|++++||+...-... ..... ...+..|+|||++++||+.+
T Consensus 554 fs~~~~~~y~ig~p~---~g~~~~i~nsd~~~~gG~g~~n~~~~~~~~~~~g~~~si~i~lp~~~~~~~~~~ 622 (639)
T PRK14706 554 LTPVYREQYRIGVPQ---GGEYRVLLSTDDGEYGGFGTQQPDLMASQEGWHGQPHSLSLNLPPSSVLILEFV 622 (639)
T ss_pred CCCCCcCCeEECCCC---CCeEEEEEcCCccccCCCCCCCCceeccccccCCCccEEEEEeCCcEEEEEEEC
Confidence 9974 45566664 689999999985431110 00000 01234689999999999853
No 12
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.1e-73 Score=666.09 Aligned_cols=559 Identities=23% Similarity=0.363 Sum_probs=379.7
Q ss_pred CCCCccEEeCC----cEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEE
Q 003977 109 AFPIGVSEVEN----GINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGY 184 (782)
Q Consensus 109 ~~~lGa~~~~~----g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y 184 (782)
..+||||+... ||+||||||+|++|+|++.++ +|+. ..++|.+ ...| +|++++|++ ..|..|+|
T Consensus 24 ~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn-----~w~~---~~~~m~~--~~~G-vw~~~i~~~-~~g~~Y~y 91 (633)
T PRK12313 24 YEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFN-----DWRG---NAHPLVR--RESG-VWEGFIPGA-KEGQLYKY 91 (633)
T ss_pred hhcCCcEEeccCCcccEEEEEECCCCCEEEEEEecC-----CCCc---ccccccc--cCCC-EEEEEeCCC-CCCCEEEE
Confidence 45799999876 999999999999999998776 3433 2466743 3445 999999985 47999999
Q ss_pred EEecCCCCCCCccccCceeeeCccccccccccccCccccccccccccccCCCCCCCCCCCCC-----CCCCCCCCeEEEE
Q 003977 185 RVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYK-----LPNIPEKDLVIYE 259 (782)
Q Consensus 185 ~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-----~p~~~~~~~vIYe 259 (782)
+|.... |. ...+.||||+.+...... .+ +..+...|.|.++.+ ++....++++|||
T Consensus 92 ~v~~~~----g~----~~~~~DPya~~~~~~~~~------~s-----~v~d~~~~~w~~~~~~~~~~~~~~~~~~~~iYe 152 (633)
T PRK12313 92 HISRQD----GY----QVEKIDPFAFYFEARPGT------AS-----IVWDLPEYKWKDGLWLARRKRWNALDRPISIYE 152 (633)
T ss_pred EEECCC----Ce----EEecCCCceEEEecCCCC------ce-----EECCCcccCCCChhhhhccccCCCCCCCceEEE
Confidence 997532 21 135799999998654321 12 223445688887532 1122347899999
Q ss_pred EecccccCCCCCCCCCCCCCCHHHHHhhc-hHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCC
Q 003977 260 MNVRAFTGDESSGLDPEIRGSYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338 (782)
Q Consensus 260 i~v~~Ft~~~~~g~~~~~~G~~~gl~~~L-dyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~ 338 (782)
|||++|+.++..+ .|+|++++++| ||||+||||+||||||+++ |. ..+|||++.+||+|++
T Consensus 153 ~hv~~f~~~~~~~-----~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~----------~~---~~~~GY~~~~y~~i~~ 214 (633)
T PRK12313 153 VHLGSWKRNEDGR-----PLSYRELADELIPYVKEMGYTHVEFMPLMEH----------PL---DGSWGYQLTGYFAPTS 214 (633)
T ss_pred EehhccccCCCCC-----ccCHHHHHHHHHHHHHHcCCCEEEeCchhcC----------CC---CCCCCCCCcCcCcCCC
Confidence 9999999875433 49999999995 9999999999999999998 31 3689999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCC
Q 003977 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLN 418 (782)
Q Consensus 339 ~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln 418 (782)
+|||. +|||+||++||++||+||||+|+||++.. +.....|++. +.|+..++.......++ ..+||
T Consensus 215 ~~Gt~--------~d~k~lv~~~H~~Gi~VilD~V~nH~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~w~-~~~~n 280 (633)
T PRK12313 215 RYGTP--------EDFMYLVDALHQNGIGVILDWVPGHFPKD---DDGLAYFDGT--PLYEYQDPRRAENPDWG-ALNFD 280 (633)
T ss_pred CCCCH--------HHHHHHHHHHHHCCCEEEEEECCCCCCCC---cccccccCCC--cceeecCCCCCcCCCCC-CcccC
Confidence 99997 99999999999999999999999999873 2222234332 23333333222221122 36899
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccEEEEcccc-ccccCC--CCC----------CCCChHHHHHHHh--ccccCCceEEe
Q 003977 419 CNHPVVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGT--DGS----------PLNAPPLIRAIAK--DAILSRCKIIA 483 (782)
Q Consensus 419 ~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~-~l~~~~--~g~----------~~~~~~~l~~i~~--~~~~~~~~lig 483 (782)
++||+||++|+++++||+++|||||||||++. ++..+. .+. ..+...+++++++ ....|++++||
T Consensus 281 ~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~lia 360 (633)
T PRK12313 281 LGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIA 360 (633)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 99999999999999999999999999999775 443321 011 1123567888775 35679999999
Q ss_pred cccCCCCccccCCCC-CcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccCCCCCcceEEEeeccCCC---
Q 003977 484 EPWDCRGLYLVGKFP-NWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGF--- 559 (782)
Q Consensus 484 E~w~~~~~~~~g~~~-~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~--- 559 (782)
|.|..........+. .....+.||..|++.++.++...+.........+.... .+. . ....+++.+||+.
T Consensus 361 E~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~---~e~~~l~~sHD~~~~g 434 (633)
T PRK12313 361 EESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLTFSF-MYA--F---SENFVLPFSHDEVVHG 434 (633)
T ss_pred ECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccchHHH-hhh--h---hcccccCCCCcccccC
Confidence 987432111100000 01123789999999999888755432211100010000 000 0 0122466789984
Q ss_pred --CchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccC
Q 003977 560 --TLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRY 637 (782)
Q Consensus 560 --tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~ 637 (782)
|+.+.+ .|. ......++|++++++||+||+||||||+|+|+.+.
T Consensus 435 ~~~~~~~~----------------------------~g~------~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~ 480 (633)
T PRK12313 435 KKSLMHKM----------------------------PGD------RWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLE 480 (633)
T ss_pred CccHHHhc----------------------------CCC------HHHHHHHHHHHHHHHHhCCCCcEeecccccccCcc
Confidence 221111 010 00123467889999999999999999999999764
Q ss_pred CCCCCCCCCCCCCccCCCcccc-ccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEEcC-C
Q 003977 638 GNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDN-N 715 (782)
Q Consensus 638 g~~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~-~ 715 (782)
.. ...+|+|+..+. ....+++|+|+||+||+++|+|+.+++.. ..+.|... .+.++++++|.|... +
T Consensus 481 ~~--------~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL~~~d~~~-~~~~~l~~--~~~~~~vlaf~R~~~~~ 549 (633)
T PRK12313 481 WK--------HDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWELDFSP-DGFEWIDA--DDADQSVLSFIRKGKNK 549 (633)
T ss_pred CC--------ccCCCCccccCChhHHHHHHHHHHHHHHHHhChHhhcccCCC-CCcEEEEC--cCCCCCEEEEEEeCCCC
Confidence 32 236799997543 34589999999999999999999876532 23555532 133568999999872 2
Q ss_pred CCeEEEEEeCCCCcEE-EEcCCCCCCCCeEEEecCCCCCCCCC---CCCCC---------CCCCceEEEcCcEEEEEEeC
Q 003977 716 GADIYLAFNAHDFFVK-VSLPPPPPKRQWFRVVDTNLESPDDI---VPEGA---------AGTGSTYNLSPYSSILLEAK 782 (782)
Q Consensus 716 ~~~~lVv~N~~~~~~~-~~Lp~~~~~~~w~~l~~t~~~~~~~~---~~~~~---------~~~~~~i~l~p~s~~vl~~k 782 (782)
++.++||+|++..+.. +.|+.+ .++.|+++++|+...-... ..... ......|.|||+|++||+.+
T Consensus 550 ~~~llvv~N~s~~~~~~y~i~~p-~~g~~~~ilnsd~~~ygG~~~~~~~~~~~~~~~~~g~~~~~~i~ip~~s~~v~~~~ 628 (633)
T PRK12313 550 GDFLVVVFNFTPVEREDYRIGVP-VAGIYEEILNTDSEEFGGSGKGNNGTVKAQEGPWHGRPQSLTLTLPPLGALVLKPK 628 (633)
T ss_pred CceEEEEEeCCCCcccceeECCC-CCCeEEEEEcCCchhcCCCCcCCCCceeecccccCCCCCEEEEEeCCCEEEEEEEc
Confidence 6789999999976433 333322 2579999999875431100 00000 01123689999999999864
No 13
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=4.3e-73 Score=661.46 Aligned_cols=552 Identities=23% Similarity=0.359 Sum_probs=372.1
Q ss_pred CCCccEEeC----CcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEE
Q 003977 110 FPIGVSEVE----NGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYR 185 (782)
Q Consensus 110 ~~lGa~~~~----~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~ 185 (782)
..||||+.+ +|++||||||+|++|+|+++++. |+. .+.+|.+ ....| +|++.|+++ .+|..|+|+
T Consensus 15 ~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~-----w~~---~~~~m~~-~~~~G-vw~~~i~~~-~~g~~Y~y~ 83 (613)
T TIGR01515 15 ELLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNY-----WDG---REHPMRR-RNDNG-IWELFIPGI-GEGELYKYE 83 (613)
T ss_pred HhcCceEeccCCcCcEEEEEECCCCCEEEEEEecCC-----CCC---ceecceE-ecCCC-EEEEEeCCC-CCCCEEEEE
Confidence 469999986 79999999999999999998763 432 2346642 11245 999999985 479999999
Q ss_pred EecCCCCCCCccccCceeeeCccccccccccccCccccccccccccccCCCCCCCCCCCC----CCCCCCC-CCeEEEEE
Q 003977 186 VDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNY----KLPNIPE-KDLVIYEM 260 (782)
Q Consensus 186 i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~----~~p~~~~-~~~vIYei 260 (782)
|+... |. ..++.||||+.++.+... .+. ..+...|.|.+.. .++..++ +++||||+
T Consensus 84 v~~~~----g~----~~~~~DPYA~~~~~~~~~------~s~-----v~d~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~ 144 (613)
T TIGR01515 84 IVTNN----GE----IRLKADPYAFYAEVRPNT------ASL-----VYDLEGYSWQDQKWQEKRKAKTPYEKPVSIYEL 144 (613)
T ss_pred EECCC----Cc----EEEeCCCCEeeeccCCCC------cEE-----EECCccCccCchhhhhcccccCcccCCceEEEE
Confidence 98532 11 246899999988653211 121 2233345555421 2223333 47899999
Q ss_pred ecccccCCCCCCCCCCCCCCHHHHHhhc-hHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCC
Q 003977 261 NVRAFTGDESSGLDPEIRGSYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 339 (782)
Q Consensus 261 ~v~~Ft~~~~~g~~~~~~G~~~gl~~~L-dyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~ 339 (782)
||++|+.. |+|++|+++| ||||+||||+||||||+++ |. .++|||++.+||+|+++
T Consensus 145 hv~~~~~~----------g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~----------~~---~~~wGY~~~~y~~~~~~ 201 (613)
T TIGR01515 145 HLGSWRHG----------LSYRELADQLIPYVKELGFTHIELLPVAEH----------PF---DGSWGYQVTGYYAPTSR 201 (613)
T ss_pred ehhhccCC----------CCHHHHHHHHHHHHHHcCCCEEEECCcccC----------CC---CCCCCCCcccCcccccc
Confidence 99999752 9999999996 9999999999999999998 21 36899999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCC
Q 003977 340 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNC 419 (782)
Q Consensus 340 yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~ 419 (782)
|||. +|||+||++||++||+||||+|+||++.. +..+..|++. +.|+..++.......++ .++||+
T Consensus 202 ~Gt~--------~dlk~lV~~~H~~Gi~VilD~V~NH~~~~---~~~~~~~~~~--~~y~~~~~~~~~~~~w~-~~~~~~ 267 (613)
T TIGR01515 202 FGTP--------DDFMYFVDACHQAGIGVILDWVPGHFPKD---DHGLAEFDGT--PLYEHKDPRDGEHWDWG-TLIFDY 267 (613)
T ss_pred cCCH--------HHHHHHHHHHHHCCCEEEEEecccCcCCc---cchhhccCCC--cceeccCCccCcCCCCC-CceecC
Confidence 9997 99999999999999999999999999963 2233344332 33443333221112222 468999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEcccccc-ccCCC---C----------CCCCChHHHHHHHh--ccccCCceEEe
Q 003977 420 NHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGTD---G----------SPLNAPPLIRAIAK--DAILSRCKIIA 483 (782)
Q Consensus 420 ~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l-~~~~~---g----------~~~~~~~~l~~i~~--~~~~~~~~lig 483 (782)
++|+||++|+++++||++||||||||||++..+ +.+.. + ...+...+++++++ +...|++++||
T Consensus 268 ~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 268 GRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 999999999999999999999999999987543 22110 1 11223568888876 45679999999
Q ss_pred cccCCCCcc----ccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccCCCCCcceEEEeeccCCC
Q 003977 484 EPWDCRGLY----LVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGF 559 (782)
Q Consensus 484 E~w~~~~~~----~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~ 559 (782)
|.+...... ..|+ ....+.||+.|++.++.++..+.. ...+..........+. . .....++.+||+.
T Consensus 348 E~~~~~~~~~~~~~~gg---~gfd~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~---~e~~~~~~sHD~~ 418 (613)
T TIGR01515 348 EESTEWPGVTRPTDEGG---LGFHYKWNMGWMHDTLDYMSTDPV-ERQYHHQLITFSMLYA--F---SENFVLPLSHDEV 418 (613)
T ss_pred EeCCCCccccccccCCc---CCcCeeeCchHHHHHHHHHhhChh-hHhhccccccHHHHHH--h---hhccccCCCCCCc
Confidence 976432111 1111 112388999999999988865432 1222100000000010 0 0122367889984
Q ss_pred CchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCC
Q 003977 560 TLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGN 639 (782)
Q Consensus 560 tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~ 639 (782)
........ +.+ .|+ . .....++|++++++||+||+||||||+|+|+.++..
T Consensus 419 ~~g~~~i~----~~~-------------------~g~----~--~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~ 469 (613)
T TIGR01515 419 VHGKKSLL----NKM-------------------PGD----Y--WQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWN 469 (613)
T ss_pred ccCcccHH----HhC-------------------CCc----h--HHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCC
Confidence 21100000 000 011 0 011346788999999999999999999999976532
Q ss_pred CCCCCCCCCCCccCCCcccc-ccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEEcCC-CC
Q 003977 640 NNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN-GA 717 (782)
Q Consensus 640 ~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~-~~ 717 (782)
....|+|+..+. ....+++|+|+||+||+++|+|+.+++... .+.|... .+.+.++++|.|...+ ++
T Consensus 470 --------~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~~-~~~~~~~--~~~~~~vlaf~R~~~~~~~ 538 (613)
T TIGR01515 470 --------DTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDFDPQ-GFEWIDV--DDDEQSVFSFIRRAKKHGE 538 (613)
T ss_pred --------CCccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCCCCC-ceEEEEc--ccCCCCEEEEEEecCCCCC
Confidence 135789986442 345899999999999999999998877542 3555532 1345689999998752 46
Q ss_pred eEEEEEeCCCCcEE---EEcCCCCCCCCeEEEecCCCCC---CCCCC-----CCCC----CCCCceEEEcCcEEEEEE
Q 003977 718 DIYLAFNAHDFFVK---VSLPPPPPKRQWFRVVDTNLES---PDDIV-----PEGA----AGTGSTYNLSPYSSILLE 780 (782)
Q Consensus 718 ~~lVv~N~~~~~~~---~~Lp~~~~~~~w~~l~~t~~~~---~~~~~-----~~~~----~~~~~~i~l~p~s~~vl~ 780 (782)
.++||+|++..+.. +.+|. ++.|+++++|+... ...+. .... ...+..|.|||++++||+
T Consensus 539 ~~~vv~N~~~~~~~~Y~i~~p~---~g~~~~il~Sd~~~~gG~g~~~~~~~~~~~~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 539 ALVIICNFTPVVRHQYRVGVPQ---PGQYREVLNSDSETYGGSGQGNKGPLSAEEGALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred eEEEEEeCCCCCccceEeCCCC---CCeEEEEEeCChhhcCCCCcCCCCceeccccccCCCCCEEEEEeCCcEEEEeC
Confidence 79999999987544 55554 47999999987543 11000 0000 012346899999999985
No 14
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=2.2e-73 Score=653.45 Aligned_cols=473 Identities=26% Similarity=0.432 Sum_probs=340.8
Q ss_pred EEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEecCCCCCCCccccC
Q 003977 121 INFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDS 200 (782)
Q Consensus 121 ~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~~~~~~~~~~~~~~ 200 (782)
|+|+||||+|++|+|+++. .+++|.+ ...| +|+++|+++ ..|+.|+|+|++.
T Consensus 1 v~FrlwAP~A~~V~L~l~~-------------~~~~m~k--~~~G-vW~~~v~~~-~~G~~Y~y~v~g~----------- 52 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLNG-------------ALHAMQR--LGDG-WFEITVPPV-GPGDRYGYVLDDG----------- 52 (542)
T ss_pred CEEEEECCCCCEEEEEeCC-------------CEEeCeE--CCCC-EEEEEECCC-CCCCEEEEEEeee-----------
Confidence 5899999999999999831 1467743 3445 999999985 4799999999751
Q ss_pred ceeeeCccccccccccccCccccccccccccccCCCCCCCCCCCCCCCCCCCCCeEEEEEecccccCCCCCCCCCCCCCC
Q 003977 201 SIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGS 280 (782)
Q Consensus 201 ~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~p~~~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~ 280 (782)
..++||||+.+..... ..+. ..+...|+|+++.+ +..+++++|||||||++|+. .||
T Consensus 53 -~~v~DPya~~~~~~~~------~~S~-----V~d~~~~~w~~~~~-~~~~~~~~viYE~hv~~f~~----------~G~ 109 (542)
T TIGR02402 53 -TPVPDPASRRQPDGVH------GPSQ-----VVDPDRYAWQDTGW-RGRPLEEAVIYELHVGTFTP----------EGT 109 (542)
T ss_pred -EEecCccccccccCCC------CCeE-----EecCcccCCCCccc-cCCCccccEEEEEEhhhcCC----------CCC
Confidence 3689999998732110 0111 22334689987544 44568999999999999975 299
Q ss_pred HHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 003977 281 YLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 360 (782)
Q Consensus 281 ~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~ 360 (782)
|+||+++|||||+||||+||||||+++ +. ..+|||++.+||+|+++|||. +|||+||++
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~----------~~---~~~~GY~~~~~~~~~~~~G~~--------~e~k~lV~~ 168 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQF----------PG---TRGWGYDGVLPYAPHNAYGGP--------DDLKALVDA 168 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccC----------CC---CCCCCCCccCccccccccCCH--------HHHHHHHHH
Confidence 999999999999999999999999998 21 368999999999999999997 999999999
Q ss_pred HhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCH---HHHHHHHHHHHHHHH
Q 003977 361 LHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHP---VVMELILDSLRHWVV 437 (782)
Q Consensus 361 ~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p---~v~~~i~d~l~~W~~ 437 (782)
||++||+||||+|+||++. ++.++..+ . + ||..+ ..++||+++|+++| +||++|+++++||++
T Consensus 169 aH~~Gi~VilD~V~NH~~~---~~~~~~~~---~-~-y~~~~------~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~ 234 (542)
T TIGR02402 169 AHGLGLGVILDVVYNHFGP---EGNYLPRY---A-P-YFTDR------YSTPWGAAINFDGPGSDEVRRYILDNALYWLR 234 (542)
T ss_pred HHHCCCEEEEEEccCCCCC---cccccccc---C-c-cccCC------CCCCCCCccccCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 33343222 1 2 55422 23567899999999 999999999999999
Q ss_pred hcCccEEEEccccccccCCCCCCCCChHHHHHHHh--ccccCC---ceEEecccCCCCcccc-CCCCCcccchhhchhHH
Q 003977 438 EYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK--DAILSR---CKIIAEPWDCRGLYLV-GKFPNWDRWAEWNGKYR 511 (782)
Q Consensus 438 e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~--~~~~~~---~~ligE~w~~~~~~~~-g~~~~~~~~~~~n~~f~ 511 (782)
||||||||||++..+.... ...+++++.+ +.+.|+ ++||||.|........ ........++.||+.|+
T Consensus 235 e~~iDGfR~D~~~~~~~~~------~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 308 (542)
T TIGR02402 235 EYHFDGLRLDAVHAIADTS------AKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDFH 308 (542)
T ss_pred HhCCcEEEEeCHHHhcccc------HHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccceEEEECchHH
Confidence 9999999999998886431 2345666554 235566 9999998844322111 00011223589999999
Q ss_pred HHHHHHHhCCC-Cc-------hhhHHHHhhcC----cc--ccc-------cCCCCCcceEEEeeccCC---CCchhhhhh
Q 003977 512 DDLRKFIKGDP-GM-------KGILATRISGS----SD--LYR-------VNKRKPYHSINFIIAHDG---FTLYDLVSY 567 (782)
Q Consensus 512 ~~i~~~~~g~~-~~-------~~~~~~~l~~~----~~--~~~-------~~~~~p~~~vnfi~~HD~---~tl~d~~~~ 567 (782)
+.++.++.|.. +. ...+...+... .. .+. .....+.+.+||++|||+ .++.+.+..
T Consensus 309 ~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~gn~~~~~Rl~~ 388 (542)
T TIGR02402 309 HALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQIGNRALGERLSQ 388 (542)
T ss_pred HHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCCCCCCHHHEEEEccCcccccccchhhhhhh
Confidence 99999988753 22 12233333211 00 000 001135688999999995 333232211
Q ss_pred ccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCCC-------
Q 003977 568 NYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN------- 640 (782)
Q Consensus 568 ~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~------- 640 (782)
.+..++++++++++||+|||||||||||+|+++...-
T Consensus 389 ------------------------------------~~~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~ 432 (542)
T TIGR02402 389 ------------------------------------LLSPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDP 432 (542)
T ss_pred ------------------------------------cCCHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCH
Confidence 0113567899999999999999999999999985210
Q ss_pred -------------------CCCCCC-------CCCCccCCCcccc-ccchHHHHHHHHHHHHhcCCCCCCCCccccCcce
Q 003977 641 -------------------NSYGHD-------TAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVT 693 (782)
Q Consensus 641 -------------------n~y~~~-------~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~ 693 (782)
+.+..+ -.+++++|+..+. ...++++|||+||+|||++++|+.++.... .
T Consensus 433 ~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~---~ 509 (542)
T TIGR02402 433 ELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARAL---E 509 (542)
T ss_pred HHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccc---e
Confidence 000011 1368899988652 456899999999999999999998875433 1
Q ss_pred eeccccCCCCCcEEEEEEEcCCCCeEEEEEeCCCCcEE
Q 003977 694 WHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVK 731 (782)
Q Consensus 694 ~~~~~~~~~~~~vlaf~R~~~~~~~~lVv~N~~~~~~~ 731 (782)
... ..++.+++|.. + ++.++|++|+++++++
T Consensus 510 ~~~----~~~~~~~~~~~--~-~~~~~v~~N~~~~~~~ 540 (542)
T TIGR02402 510 VVV----DEDPGWVAVRF--G-RGELVLAANLSTSPVA 540 (542)
T ss_pred eee----cCCCCEEEEEE--C-CCeEEEEEeCCCCCcC
Confidence 111 23567888873 3 5689999999987654
No 15
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2e-72 Score=667.41 Aligned_cols=558 Identities=22% Similarity=0.381 Sum_probs=381.2
Q ss_pred CCCCccEEeC----CcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCC-CCCCEEEEEEeCCCCCCceEE
Q 003977 109 AFPIGVSEVE----NGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVN-KTGDIWHICIEDLPRSEVLYG 183 (782)
Q Consensus 109 ~~~lGa~~~~----~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~vW~~~v~~~~~~g~~Y~ 183 (782)
...||||+.. +||+||||||+|++|+|++++++ |+.. ..+|.+ . ..| +|+++||++. .|..|+
T Consensus 117 ~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gdfn~-----w~~~---~~~m~~--~~~~G-vw~~~i~~~~-~g~~Y~ 184 (726)
T PRK05402 117 YETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGDFNG-----WDGR---RHPMRL--RGESG-VWELFIPGLG-EGELYK 184 (726)
T ss_pred hhccccEEeccCCCCcEEEEEECCCCCEEEEEEEcCC-----CCCc---cccceE--cCCCC-EEEEEeCCCC-CCCEEE
Confidence 4579999975 79999999999999999998763 4332 346642 3 345 9999999864 799999
Q ss_pred EEEecCCCCCCCccccCceeeeCccccccccccccCccccccccccccccCCCCCCCCCCCCCCC-----CCCCCCeEEE
Q 003977 184 YRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLP-----NIPEKDLVIY 258 (782)
Q Consensus 184 y~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~p-----~~~~~~~vIY 258 (782)
|+|+..+ |. ...+.||||++++.++.. .+ +..+...|.|+++.+.. ....++++||
T Consensus 185 y~v~~~~----g~----~~~~~DPYa~~~~~~~~~------~s-----~v~d~~~~~w~~~~~~~~~~~~~~~~~~~~iY 245 (726)
T PRK05402 185 FEILTAD----GE----LLLKADPYAFAAEVRPAT------AS-----IVADLSQYQWNDAAWMEKRAKRNPLDAPISIY 245 (726)
T ss_pred EEEeCCC----Cc----EeecCCCceEEEecCCCC------cE-----EEeCCccCCCCCcchhhcccccCcccCCcEEE
Confidence 9998532 21 124699999999765422 12 22344678898754321 1245789999
Q ss_pred EEecccccCCCCCCCCCCCCCCHHHHHhhc-hHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCC
Q 003977 259 EMNVRAFTGDESSGLDPEIRGSYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM 337 (782)
Q Consensus 259 ei~v~~Ft~~~~~g~~~~~~G~~~gl~~~L-dyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d 337 (782)
||||++|+.+.. ....|+|++|+++| ||||+||||+||||||+++ |. ..+|||++.+||+|+
T Consensus 246 e~hv~~f~~~~~----~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~----------~~---~~~~GY~~~~y~ai~ 308 (726)
T PRK05402 246 EVHLGSWRRHED----GGRFLSYRELADQLIPYVKEMGFTHVELLPIAEH----------PF---DGSWGYQPTGYYAPT 308 (726)
T ss_pred EEehhhhccCCC----CCcccCHHHHHHHHHHHHHHcCCCEEEECCcccC----------CC---CCCCCCCcccCCCcC
Confidence 999999997621 12349999999996 9999999999999999998 31 368999999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCC-CCCccCcCCCCCC
Q 003977 338 SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDG-TGQLLNYAGCGNT 416 (782)
Q Consensus 338 ~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~-~g~~~~~~~~~~~ 416 (782)
++|||. +|||+||++||++||+||||+|+||++.. +..+..|++. +.|+..++ .+...+|.. ..
T Consensus 309 ~~~Gt~--------~dfk~lV~~~H~~Gi~VilD~V~NH~~~~---~~~~~~~~~~--~~y~~~~~~~~~~~~w~~--~~ 373 (726)
T PRK05402 309 SRFGTP--------DDFRYFVDACHQAGIGVILDWVPAHFPKD---AHGLARFDGT--ALYEHADPREGEHPDWGT--LI 373 (726)
T ss_pred cccCCH--------HHHHHHHHHHHHCCCEEEEEECCCCCCCC---ccchhccCCC--cceeccCCcCCccCCCCC--cc
Confidence 999997 99999999999999999999999999862 2233344432 33333332 233344433 37
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCccEEEEcccc-ccccCCC---CCC----------CCChHHHHHHHh--ccccCCce
Q 003977 417 LNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTD---GSP----------LNAPPLIRAIAK--DAILSRCK 480 (782)
Q Consensus 417 ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~-~l~~~~~---g~~----------~~~~~~l~~i~~--~~~~~~~~ 480 (782)
+|+++|+||++|+++++||+++|||||||||++. +++.+.. |.| .+...+++++++ +...|+++
T Consensus 374 ~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~ 453 (726)
T PRK05402 374 FNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGAL 453 (726)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 8999999999999999999999999999999764 4433211 111 113467887766 35679999
Q ss_pred EEecccCCCCc----cccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccCCCCCcceEEEeecc
Q 003977 481 IIAEPWDCRGL----YLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAH 556 (782)
Q Consensus 481 ligE~w~~~~~----~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~H 556 (782)
+|||.+..... ...+++ .....||..|++.+.+++..+..........+..+ .++. . ....+++.||
T Consensus 454 liaE~~~~~~~~~~~~~~~G~---gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~--~---~e~~~l~~sH 524 (726)
T PRK05402 454 TIAEESTAWPGVTRPTEEGGL---GFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFS-LLYA--Y---SENFVLPLSH 524 (726)
T ss_pred EEEECCCCCcCccccccCCCC---CCCceecCCcchHHHHHHhhCcccccccccchhHH-HhHh--h---hccccCCCCC
Confidence 99996532111 011111 12378898888888888765432211100001000 0000 0 0123567889
Q ss_pred CCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCcc
Q 003977 557 DGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTR 636 (782)
Q Consensus 557 D~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~ 636 (782)
|+......... +.. .|. ......++|++++++||+||+||||||||+|+.+
T Consensus 525 D~~~~g~~~l~----~~~-------------------~g~------~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~ 575 (726)
T PRK05402 525 DEVVHGKGSLL----GKM-------------------PGD------DWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGR 575 (726)
T ss_pred ceeeeCcccHH----hhC-------------------CCC------HHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCC
Confidence 98532110000 000 011 0112456788899999999999999999999987
Q ss_pred CCCCCCCCCCCCCCccCCCcccc-ccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEEcCC
Q 003977 637 YGNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN 715 (782)
Q Consensus 637 ~g~~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~ 715 (782)
... ...+|+|+..+. ....+++|+|+||+||+++|+|+.+++... .+.|... .+.+++|++|.|..+.
T Consensus 576 ~~~--------~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~-~~~~~~~--~~~~~~vlaf~R~~~~ 644 (726)
T PRK05402 576 EWN--------HDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDPE-GFEWIDA--DDAENSVLSFLRRGKD 644 (726)
T ss_pred CCC--------ccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCcC-CeeEEec--ccCCCCEEEEEEecCC
Confidence 532 357899987542 345899999999999999999998877542 4555532 1345789999998653
Q ss_pred -CCeEEEEEeCCCCc---EEEEcCCCCCCCCeEEEecCCCCCCCCC--CCCC-C---------CCCCceEEEcCcEEEEE
Q 003977 716 -GADIYLAFNAHDFF---VKVSLPPPPPKRQWFRVVDTNLESPDDI--VPEG-A---------AGTGSTYNLSPYSSILL 779 (782)
Q Consensus 716 -~~~~lVv~N~~~~~---~~~~Lp~~~~~~~w~~l~~t~~~~~~~~--~~~~-~---------~~~~~~i~l~p~s~~vl 779 (782)
++.++||+|++..+ ..+.+|. .+.|+++++++...-... .... . ...+..|.|||+|++||
T Consensus 645 ~~~~vlvv~N~~~~~~~~y~i~~p~---~g~~~~ilnsd~~~~gg~~~~~~~~~~~~~~~~~g~~~~~~i~lp~~~~~v~ 721 (726)
T PRK05402 645 DGEPLLVVCNFTPVPRHDYRLGVPQ---AGRWREVLNTDAEHYGGSNVGNGGGVHAEEVPWHGRPHSLSLTLPPLATLIL 721 (726)
T ss_pred CCCeEEEEEeCCCCcccceEECCCC---CCeEEEEEcCcchhhCCCCCCCCCceeccccccCCCCCEEEEEeCCCEEEEE
Confidence 47899999999764 3455553 579999999985431110 0000 0 01234789999999999
Q ss_pred Ee
Q 003977 780 EA 781 (782)
Q Consensus 780 ~~ 781 (782)
+.
T Consensus 722 ~~ 723 (726)
T PRK05402 722 KP 723 (726)
T ss_pred EE
Confidence 85
No 16
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1e-71 Score=670.37 Aligned_cols=555 Identities=21% Similarity=0.324 Sum_probs=385.1
Q ss_pred CCCCccEEe--------CCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCc
Q 003977 109 AFPIGVSEV--------ENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEV 180 (782)
Q Consensus 109 ~~~lGa~~~--------~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~ 180 (782)
+.-||||+. .+||+|+||||+|++|+|++++|. |++. ..+|.+ ....| +|+++||++. .|.
T Consensus 620 y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~-----w~~~---~~~m~~-~~~~G-vW~~fipg~~-~G~ 688 (1224)
T PRK14705 620 WDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNG-----WDGR---EHSMRS-LGSSG-VWELFIPGVV-AGA 688 (1224)
T ss_pred HHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecC-----CCCC---cccceE-CCCCC-EEEEEECCCC-CCC
Confidence 345999983 348999999999999999999873 5543 345632 12345 9999999965 799
Q ss_pred eEEEEEecCCCCCCCccccCceeeeCccccccccccccCccccccccccccccCCCCCCCCCCCCCC----CCCC-CCCe
Q 003977 181 LYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKL----PNIP-EKDL 255 (782)
Q Consensus 181 ~Y~y~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~----p~~~-~~~~ 255 (782)
.|+|+|.+.. |.. ..+.||||+.++.++.. .|.+ .+. .|.|+++.+. +..+ .+++
T Consensus 689 ~Yky~i~~~~----g~~----~~k~DPyA~~~e~~p~~------aS~V-----~d~-~~~w~d~~W~~~r~~~~~~~~p~ 748 (1224)
T PRK14705 689 CYKFEILTKA----GQW----VEKADPLAFGTEVPPLT------ASRV-----VEA-SYAFKDAEWMSARAERDPHNSPM 748 (1224)
T ss_pred EEEEEEEcCC----CcE----EecCCccccccccCCCC------CeEE-----eCC-CCCcCChhhhhccccCCCCcCCc
Confidence 9999998743 221 34689999988654321 2222 222 3777764221 1122 4789
Q ss_pred EEEEEecccccCCCCCCCCCCCCCCHHHHHhh-chHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCC
Q 003977 256 VIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFF 334 (782)
Q Consensus 256 vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~-LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~ 334 (782)
+|||+||++|+.. |+|++++++ |||||+|||||||||||+|+ |. .++|||++.+||
T Consensus 749 ~IYEvHvgsf~~~----------~~~~~l~~~lldYlk~LGvt~IeLmPv~e~----------p~---~~swGY~~~~y~ 805 (1224)
T PRK14705 749 SVYEVHLGSWRLG----------LGYRELAKELVDYVKWLGFTHVEFMPVAEH----------PF---GGSWGYQVTSYF 805 (1224)
T ss_pred EEEEEEecccccC----------CchHHHHHHHHHHHHHhCCCEEEECccccC----------CC---CCCCCCCccccC
Confidence 9999999999762 899999998 69999999999999999998 32 478999999999
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCC-CCccCcCCC
Q 003977 335 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGT-GQLLNYAGC 413 (782)
Q Consensus 335 a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~-g~~~~~~~~ 413 (782)
+|+++|||. +|||+||++||++||+||||+|+||++.. ...+..|++. +.|+..++. +....|.
T Consensus 806 ap~~ryGt~--------~dfk~lVd~~H~~GI~VILD~V~nH~~~d---~~~l~~fdg~--~~y~~~d~~~g~~~~Wg-- 870 (1224)
T PRK14705 806 APTSRFGHP--------DEFRFLVDSLHQAGIGVLLDWVPAHFPKD---SWALAQFDGQ--PLYEHADPALGEHPDWG-- 870 (1224)
T ss_pred CcCcccCCH--------HHHHHHHHHHHHCCCEEEEEeccccCCcc---hhhhhhcCCC--cccccCCcccCCCCCCC--
Confidence 999999997 99999999999999999999999999862 2223345443 344444433 3333332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccc-cccccCCC---CCC----------CCChHHHHHHHh--ccccC
Q 003977 414 GNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLA-SVLCRGTD---GSP----------LNAPPLIRAIAK--DAILS 477 (782)
Q Consensus 414 ~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a-~~l~~~~~---g~~----------~~~~~~l~~i~~--~~~~~ 477 (782)
...+|+++++||++|+++++||+++|||||||||++ ++++.++. |.| .++..+++++++ ....|
T Consensus 871 ~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p 950 (1224)
T PRK14705 871 TLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHP 950 (1224)
T ss_pred CceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCC
Confidence 246899999999999999999999999999999975 55554432 222 345678888876 34579
Q ss_pred CceEEecccCCCCccc----cCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccCCCCCcceEEEe
Q 003977 478 RCKIIAEPWDCRGLYL----VGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFI 553 (782)
Q Consensus 478 ~~~ligE~w~~~~~~~----~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi 553 (782)
++++|||.+..-.... .|+ ......||+.|++++.+|+..++.........+..+. .|. ....+.+.
T Consensus 951 ~~~~IAEest~~p~vt~p~~~GG---lGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~-~ya-----~~e~fvl~ 1021 (1224)
T PRK14705 951 GAVMIAEESTAFPGVTAPTSHGG---LGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSL-VYA-----FTENFLLP 1021 (1224)
T ss_pred CeEEEEEcCCCCcCccccccCCC---ccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHH-HHH-----hhcCEecc
Confidence 9999999765421111 111 1123899999999999999887654332111221111 110 01223345
Q ss_pred eccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEecccccc
Q 003977 554 IAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYG 633 (782)
Q Consensus 554 ~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g 633 (782)
.+||+..-. |....+. ..|+. ..+...+|++++++|++||+||||||+|||
T Consensus 1022 ~SHDevvhg-------k~sl~~k----------------m~Gd~------~~k~a~lR~~~a~~~~~PGk~LlFMG~Efg 1072 (1224)
T PRK14705 1022 ISHDEVVHG-------KGSMLRK----------------MPGDR------WQQLANLRAFLAYQWAHPGKQLIFMGTEFG 1072 (1224)
T ss_pred ccccccccc-------chhHHHh----------------CCCcH------HHHHHHHHHHHHHHHhcCCcCEEECccccC
Confidence 689974211 0000000 01111 112345788899999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCccCCCcccc-ccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEE
Q 003977 634 HTRYGNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLH 712 (782)
Q Consensus 634 ~~~~g~~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~ 712 (782)
+..+.+ ....++|...+. .+..+..|+|+|++||+++|+|+..+.... .+.|+.. .+.+++|++|.|+
T Consensus 1073 q~~ew~--------~~~~LdW~ll~~~~h~~~~~~~rdLn~ly~~~paL~~~d~~~~-gf~wi~~--~d~~~~vlaf~R~ 1141 (1224)
T PRK14705 1073 QEAEWS--------EQHGLDWFLADIPAHRGIQLLTKDLNELYTSTPALYQRDNEPG-GFQWING--GDADRNVLSFIRW 1141 (1224)
T ss_pred CCCCcc--------ccccCCCcccCChhhHHHHHHHHHHHHHHhcChhhhccCCCCC-ceEEeec--CCCCCcEEEEEEe
Confidence 987643 224589998663 345799999999999999999998876543 6778743 2557789999998
Q ss_pred cCCCCeEEEEEeCCCCcEE-EEcCCCCCCCCeEEEecCCCCCC--CCCCC------CCCC----CCCceEEEcCcEEEEE
Q 003977 713 DNNGADIYLAFNAHDFFVK-VSLPPPPPKRQWFRVVDTNLESP--DDIVP------EGAA----GTGSTYNLSPYSSILL 779 (782)
Q Consensus 713 ~~~~~~~lVv~N~~~~~~~-~~Lp~~~~~~~w~~l~~t~~~~~--~~~~~------~~~~----~~~~~i~l~p~s~~vl 779 (782)
.+.++.++||+|++..+.. +.|.. |..+.|++++||+...- +.... +... ..+..|+|||++++||
T Consensus 1142 ~~~~~~vlvv~Nftp~~~~~y~igv-p~~G~y~eilnsd~~~ygGsg~~n~~~~~~~~~~~~g~~~s~~i~lPpl~~~~~ 1220 (1224)
T PRK14705 1142 DGDGNPLVCAINFSGGPHKGYTLGV-PAAGAWTEVLNTDHETYGGSGVLNPGSLKATTEGQDGQPATLTVTLPPLGASFF 1220 (1224)
T ss_pred CCCCCEEEEEEcCCCCCccCceECC-CCCCeEEEEEeCchhhcCCCCcCCCCceeecccccCCCCceEEEEecCCEEEEE
Confidence 7545679999999987766 44422 22579999999985431 11101 0000 1234689999999999
Q ss_pred EeC
Q 003977 780 EAK 782 (782)
Q Consensus 780 ~~k 782 (782)
+.+
T Consensus 1221 ~~~ 1223 (1224)
T PRK14705 1221 APA 1223 (1224)
T ss_pred EEC
Confidence 853
No 17
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2.9e-68 Score=614.59 Aligned_cols=588 Identities=19% Similarity=0.267 Sum_probs=393.5
Q ss_pred ccccccccccCCcccCCCCCCCCccEEeCCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEE
Q 003977 90 EESPRVSETTLPLKTSQGQAFPIGVSEVENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWH 169 (782)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~lGa~~~~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~ 169 (782)
+...++.+...+++.++..+..||||+.++||+|+||||+|++|+|+++++ +|+.. ..+|.+ ...| +|+
T Consensus 85 ~~~~~i~~~~~~l~~f~~~y~~lGa~~~~~g~~FrvWAP~A~~V~LvGdFN-----~W~~~---~~~M~~--~~~G-vWe 153 (758)
T PLN02447 85 RRREEIEKNEGGLEAFSRGYEKFGFNRSEGGITYREWAPGAKAAALIGDFN-----NWNPN---AHWMTK--NEFG-VWE 153 (758)
T ss_pred HHHHHHhhcCCCHHHHHHHHHhceeEEecCCEEEEEECCCCCEEEEEEecC-----CCCCC---ccCcee--CCCC-EEE
Confidence 556667777788888888888999999999999999999999999999987 36433 356743 4566 999
Q ss_pred EEEeC------CCCCCceEEEEEecCCCCCCCccccCceeeeCccccccccccccCcccccccccccc-ccCC-CCCCCC
Q 003977 170 ICIED------LPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGT-YEFE-SLPFDW 241 (782)
Q Consensus 170 ~~v~~------~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~w 241 (782)
++||+ ++ +|..|+|+|+..+ |. ....+||||+.++.++.- ....+.+. .+.+ ..+|.|
T Consensus 154 ~~ip~~~g~~~~~-~G~~Yky~i~~~~----g~----~~~r~dpya~~~~~~p~~-----~~~~~~svv~dp~~~~~y~w 219 (758)
T PLN02447 154 IFLPDADGSPAIP-HGSRVKIRMETPD----GR----WVDRIPAWIKYAVQAPGE-----IGAPYNGVYWDPPEEEKYVF 219 (758)
T ss_pred EEECCccccccCC-CCCEEEEEEEeCC----Cc----EEeecCchHheeeccCCc-----cCCCCceEEeCCCCCCCCCC
Confidence 99998 53 7999999998753 11 235699999887654321 00011111 1221 135899
Q ss_pred CCCCCCCCCCCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHh-hchHHHHcCCcEEEECCccccchhhhhhcCCCCC
Q 003977 242 GDNYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQ-KIPHLLELGINAVELLPVFEFDEMEFQRRRNPRD 320 (782)
Q Consensus 242 ~~~~~~p~~~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~-~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~ 320 (782)
.++. |. ..++++|||+||+.|+.. . ..|+|+++++ +|||||+||||+||||||+++ +
T Consensus 220 ~~~~--~~-~~~~~~IYE~Hvg~~~~~--~-----~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~----------~-- 277 (758)
T PLN02447 220 KHPR--PP-RPAALRIYEAHVGMSSEE--P-----KVNSYREFADDVLPRIKALGYNAVQLMAIQEH----------A-- 277 (758)
T ss_pred CCCC--CC-CCCCCEEEEEeCCcccCC--C-----CCCCHHHHHHHHHHHHHHcCCCEEEECCcccc----------C--
Confidence 8652 33 346899999999988642 1 2499999876 599999999999999999998 2
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCccee
Q 003977 321 HMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYM 400 (782)
Q Consensus 321 ~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~ 400 (782)
...+|||++.+||+|+++|||. +|||+||++||++||+||||||+||++..... .+..|++.. ..||.
T Consensus 278 -~~~~wGY~~~~~fa~~~~~Gtp--------~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~--gl~~fDg~~-~~Yf~ 345 (758)
T PLN02447 278 -YYGSFGYHVTNFFAVSSRSGTP--------EDLKYLIDKAHSLGLRVLMDVVHSHASKNTLD--GLNGFDGTD-GSYFH 345 (758)
T ss_pred -CCCCCCcCcccCcccccccCCH--------HHHHHHHHHHHHCCCEEEEEeccccccccccc--cccccCCCC-ccccc
Confidence 1468999999999999999997 99999999999999999999999999963211 123455433 34555
Q ss_pred eCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEcccccc-cc------CCCC---------CCCCCh
Q 003977 401 VDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CR------GTDG---------SPLNAP 464 (782)
Q Consensus 401 ~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l-~~------~~~g---------~~~~~~ 464 (782)
.++.+.. ..++ ...+|+++++|+++|+++++||++||||||||||++..| +. ++.+ ...++.
T Consensus 346 ~~~~g~~-~~w~-~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~ 423 (758)
T PLN02447 346 SGPRGYH-WLWD-SRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAV 423 (758)
T ss_pred cCCCCCc-CcCC-CceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHH
Confidence 5443322 2222 236999999999999999999999999999999976655 32 1211 133455
Q ss_pred HHHHHHHh--ccccCCceEEecccCCCC-cc---ccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccc
Q 003977 465 PLIRAIAK--DAILSRCKIIAEPWDCRG-LY---LVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDL 538 (782)
Q Consensus 465 ~~l~~i~~--~~~~~~~~ligE~w~~~~-~~---~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~ 538 (782)
.+|+.++. ....|++++|||.+..-. +. ..|+ ......||+.+++...++++..+..... ...|..+. .
T Consensus 424 ~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~~~GG---lGFDykw~Mg~~~~~l~~l~~~~d~~~~-~~~l~~sl-~ 498 (758)
T PLN02447 424 VYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGG---VGFDYRLAMAIPDKWIELLKEKRDEDWS-MGDIVHTL-T 498 (758)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccCCCCc---CCcceEECCccchHHHHHHhhCCCcccC-HHHHHHHH-h
Confidence 67777766 456799999999764321 11 1111 1123899999999999999876522111 12222211 1
Q ss_pred cccCCCCCcceEEEeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 003977 539 YRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALM 618 (782)
Q Consensus 539 ~~~~~~~p~~~vnfi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll 618 (782)
+ .+.....|.|.+|||+....+....- ....++ .+ + ...+......+..-.....|++.+++|
T Consensus 499 ~---r~~~E~~I~y~eSHDevv~Gkksl~~---~l~d~~--------my-~--~m~~~~~~~~~~~R~~~lhkmirl~~~ 561 (758)
T PLN02447 499 N---RRYTEKCVAYAESHDQALVGDKTIAF---WLMDKE--------MY-D--GMSTLTPATPVVDRGIALHKMIRLITM 561 (758)
T ss_pred c---ccccCceEeccCCcCeeecCcchhHh---hhcchh--------hh-h--cCCCChhhhhhHHHHHHHHHHHHHHHH
Confidence 1 12235788899999986442221000 000000 00 0 001111111111001122345556899
Q ss_pred HcCCe-eeEeccccccCcc------CCCCCCCCCCCCCCccCCCcccc---ccchHHHHHHHHHHHHhcCCCCCCCCccc
Q 003977 619 VSQGT-PMMLMGDEYGHTR------YGNNNSYGHDTAINNFQWGQLET---KKNSHYRFFSEVIKFRQSRRVFGREDFLN 688 (782)
Q Consensus 619 ~~pGi-P~iy~GdE~g~~~------~g~~n~y~~~~~~~~~~W~~~~~---~~~~l~~~~~~Li~lRk~~paL~~g~~~~ 688 (782)
++||. +++|||+|||+.. .+++.+|. ..+++|+..+. ....+.+|+|.|++|++++|+|..+.
T Consensus 562 ~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~----~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~--- 634 (758)
T PLN02447 562 ALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYD----KCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEH--- 634 (758)
T ss_pred hCCCCcceeecccccCCchhccCcccccccCcc----cccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCC---
Confidence 99999 7999999999962 33333331 23479998653 25689999999999999999997542
Q ss_pred cCcceeeccccCCCCCcEEEEEEEcCCCCeEEEEEeCCCC----cEEEEcCCCCCCCCeEEEecCCCCCCCCC-------
Q 003977 689 INDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDF----FVKVSLPPPPPKRQWFRVVDTNLESPDDI------- 757 (782)
Q Consensus 689 ~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lVv~N~~~~----~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~------- 757 (782)
.|+.. .+.+++||+|.|. .++||+||+.. ...+.+|. .+.|++++||+...-...
T Consensus 635 ----~~i~~--~d~~~~Viaf~R~-----~ll~V~NF~p~~s~~~Y~igvp~---~G~y~~ilnSD~~~fGG~~~~~~~~ 700 (758)
T PLN02447 635 ----QYVSR--KDEGDKVIVFERG-----DLVFVFNFHPTNSYSDYRVGCDK---PGKYKIVLDSDAWEFGGFGRVDHDA 700 (758)
T ss_pred ----ceeee--ecCCCCEEEEEeC-----CeEEEEeCCCCCCCCCcEECCCC---CCeEEEEECCCchhcCCCCccCCCc
Confidence 23321 2567899999993 39999999963 34444443 689999999985431111
Q ss_pred --CCCCC----CCCCceEEEcCcEEEEEEe
Q 003977 758 --VPEGA----AGTGSTYNLSPYSSILLEA 781 (782)
Q Consensus 758 --~~~~~----~~~~~~i~l~p~s~~vl~~ 781 (782)
..... ...+..|.|||++++||+.
T Consensus 701 ~~~~~~~~~~~~~~s~~v~iP~~~~~vl~~ 730 (758)
T PLN02447 701 DHFTPEGNFDNRPHSFMVYAPSRTAVVYAP 730 (758)
T ss_pred cEEecccCcCCCCcEEEEEeCCceEEEEEE
Confidence 00000 1123468899999999985
No 18
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.3e-66 Score=579.68 Aligned_cols=559 Identities=24% Similarity=0.414 Sum_probs=382.5
Q ss_pred CCCCCccEEeC---CcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEE
Q 003977 108 QAFPIGVSEVE---NGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGY 184 (782)
Q Consensus 108 ~~~~lGa~~~~---~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y 184 (782)
-...+||++.. .||+|+||||+|++|+|++.+| +|++ .+++|... .++| +|+++||++. .|+.|+|
T Consensus 22 ~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn-----~w~~---~~~~~~~~-~~~G-~we~~vp~~~-~G~~Yky 90 (628)
T COG0296 22 LYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFN-----DWDG---RRMPMRDR-KESG-IWELFVPGAP-PGTRYKY 90 (628)
T ss_pred hHhhhCcccccCCCCceEEEEECCCCCeEEEEeecC-----Cccc---eecccccC-CCCc-eEEEeccCCC-CCCeEEE
Confidence 45678998854 3699999999999999999987 3543 34555322 2567 9999999875 7999999
Q ss_pred EEecCCCCCCCccccCceeeeCccccccccccccCccccccccccccccCCCCCCCCCCC---CCCCCCCCCCeEEEEEe
Q 003977 185 RVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDN---YKLPNIPEKDLVIYEMN 261 (782)
Q Consensus 185 ~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~---~~~p~~~~~~~vIYei~ 261 (782)
+|.++.. . ...+.||||+....... .+|.+ .+...|.|++. ...+...+++++|||+|
T Consensus 91 ~l~~~~g----~----~~~~~DP~a~~~~~~p~------~aS~v-----~~~~~y~W~d~~~~~~~~~~~~e~~vIYElH 151 (628)
T COG0296 91 ELIDPSG----Q----LRLKADPYARRQEVGPH------TASQV-----VDLPDYEWQDERWDRAWRGRFWEPIVIYELH 151 (628)
T ss_pred EEeCCCC----c----eeeccCchhhccCCCCC------Cccee-----cCCCCcccccccccccccCCCCCCceEEEEE
Confidence 9998652 1 25789999988754321 12332 23445888743 22344567899999999
Q ss_pred cccccCCCCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCC
Q 003977 262 VRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYA 341 (782)
Q Consensus 262 v~~Ft~~~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yG 341 (782)
|.+|+.+ ...|+++..+++|||||+||||||+||||.|+ | +..+|||+++.||||.++||
T Consensus 152 vGs~~~~-------~~~~~~e~a~~llpYl~elG~T~IELMPv~e~----------p---~~~sWGYq~~g~yAp~sryG 211 (628)
T COG0296 152 VGSFTPD-------RFLGYFELAIELLPYLKELGITHIELMPVAEH----------P---GDRSWGYQGTGYYAPTSRYG 211 (628)
T ss_pred eeeccCC-------CCcCHHHHHHHHhHHHHHhCCCEEEEcccccC----------C---CCCCCCCCcceeccccccCC
Confidence 9999871 22399999999999999999999999999999 4 25899999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceee-CCCCCccCcCCCCCCC-CC
Q 003977 342 AGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMV-DGTGQLLNYAGCGNTL-NC 419 (782)
Q Consensus 342 t~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~-d~~g~~~~~~~~~~~l-n~ 419 (782)
|. ++||+||++||++||.||||+|+||++. +..++..|++. .+|.. ++..... ..||..+ |+
T Consensus 212 tP--------edfk~fVD~aH~~GIgViLD~V~~HF~~---d~~~L~~fdg~---~~~e~~~~~~~~~--~~Wg~~i~~~ 275 (628)
T COG0296 212 TP--------EDFKALVDAAHQAGIGVILDWVPNHFPP---DGNYLARFDGT---FLYEHEDPRRGEH--TDWGTAIFNY 275 (628)
T ss_pred CH--------HHHHHHHHHHHHcCCEEEEEecCCcCCC---CcchhhhcCCc---cccccCCcccccC--CCcccchhcc
Confidence 98 9999999999999999999999999998 44455567654 23322 3321111 1234333 44
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEcccc-ccccCCC---C----------CCCCChHHHHHHHh--ccccCCceEEe
Q 003977 420 NHPVVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGTD---G----------SPLNAPPLIRAIAK--DAILSRCKIIA 483 (782)
Q Consensus 420 ~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~-~l~~~~~---g----------~~~~~~~~l~~i~~--~~~~~~~~lig 483 (782)
.+++||+||+++++||+++|||||||+||+. +++.+.. + ...++.++++..+. ....|+++.|+
T Consensus 276 gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~ia 355 (628)
T COG0296 276 GRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIA 355 (628)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeee
Confidence 5999999999999999999999999999655 5555421 1 12223344444443 34568889999
Q ss_pred cccCCCCccccC-CCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccCCCCCcceEEEeeccCCC--C
Q 003977 484 EPWDCRGLYLVG-KFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGF--T 560 (782)
Q Consensus 484 E~w~~~~~~~~g-~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~--t 560 (782)
|.|.+......- ..........||+.++.+...|+..++.....-...+..+. + ..+...+.|+.|||+. .
T Consensus 356 eestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~~-~-----y~~se~~~l~~sHDevvhG 429 (628)
T COG0296 356 EESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFGL-L-----YAFSENVVLPLSHDEVVHG 429 (628)
T ss_pred eeccCCCCceeeecccccchhhhhhhhhHhhHHHhcccCccccccccCCCcccc-c-----cccceeEeccccccceeec
Confidence 999764211100 00001123778888888877777666543332222222211 1 2345778899999985 2
Q ss_pred chhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCCC
Q 003977 561 LYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN 640 (782)
Q Consensus 561 l~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~ 640 (782)
-..+. +. .+|. .......+|.++++|+++||+|+||||+|+|+..+.+
T Consensus 430 k~sl~-----------~r--------------m~g~------~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~- 477 (628)
T COG0296 430 KRSLG-----------ER--------------MPGD------AWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWN- 477 (628)
T ss_pred ccchh-----------cc--------------CCcc------hhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCc-
Confidence 11111 00 0111 1234567888999999999999999999999988754
Q ss_pred CCCCCCCCCCccCCCcccc---c--cchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEE--c
Q 003977 641 NSYGHDTAINNFQWGQLET---K--KNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLH--D 713 (782)
Q Consensus 641 n~y~~~~~~~~~~W~~~~~---~--~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~--~ 713 (782)
....++|..+.. . .+.+..+.+.|.++-+..+.+...++... .+.|.... +..+++++|.|. .
T Consensus 478 -------~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~~~~~~~~-~~~W~~~~--~~~~~v~af~R~l~~ 547 (628)
T COG0296 478 -------FFSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLHEQDFQPE-GFEWIDAD--DAENSVLAFYRRLLA 547 (628)
T ss_pred -------ccCCCChhhhhhccccchHHHHHHHHHhhHHhhccCCccchhhhccc-CCceeecC--chhhhHHHHHHHHhh
Confidence 123457754442 2 45788888888888888999988877544 67887542 334589999995 2
Q ss_pred CCCCeEEEEEeCCCCc-EEEEcCCCCCCCCeEEEecCCCCCC---CC------CCCCCC----CCCCceEEEcCcEEEEE
Q 003977 714 NNGADIYLAFNAHDFF-VKVSLPPPPPKRQWFRVVDTNLESP---DD------IVPEGA----AGTGSTYNLSPYSSILL 779 (782)
Q Consensus 714 ~~~~~~lVv~N~~~~~-~~~~Lp~~~~~~~w~~l~~t~~~~~---~~------~~~~~~----~~~~~~i~l~p~s~~vl 779 (782)
...+.++|+.|++..+ ..+.++.+ ..++|+++++|+...- .. +..+.. ......+.|+|.+++||
T Consensus 548 ~~~~~lv~~~n~~~~~~~~y~~~~~-~~g~~~~~lntd~~~~ggs~~~~~~~~~~~~~~~~~~~~~~~~~~lpp~~~~~l 626 (628)
T COG0296 548 LRHEHLVVVNNFTPVPRVDYRVGVP-VAGRWREVLNTDLAEYGGSGAGNLGLPVSGEDILWHGREWSLSLTLPPLAALVL 626 (628)
T ss_pred cCCceEEEEeCCCCCcccccccCCc-ccccEEEeccchHHHhcCCccccccceecceeeeccCcceeeEEecCCceeeEe
Confidence 3245577888877643 44445443 4689999999853321 10 000100 11245789999999998
Q ss_pred Ee
Q 003977 780 EA 781 (782)
Q Consensus 780 ~~ 781 (782)
+.
T Consensus 627 ~~ 628 (628)
T COG0296 627 KL 628 (628)
T ss_pred eC
Confidence 63
No 19
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=2.9e-65 Score=594.06 Aligned_cols=501 Identities=18% Similarity=0.268 Sum_probs=349.5
Q ss_pred EeCCcEEEEEEcCCC---CeEEEEEEeCCCccccCCCCCceeeeCCCCCCC-CCCEEEEEEeCC-CCCCceEEEEEecCC
Q 003977 116 EVENGINFAIFSQHA---TAVTLCLSLPKREKLDWQDGGMIELPLDPRVNK-TGDIWHICIEDL-PRSEVLYGYRVDGPR 190 (782)
Q Consensus 116 ~~~~g~~F~vwaP~a---~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~vW~~~v~~~-~~~g~~Y~y~i~~~~ 190 (782)
..++.+.++|..+.. .+|.|.....+ ....++|.+.... .-++|++.++-. ...-..|.|+|....
T Consensus 16 ~~~~~~~~~lr~~~~~~~~~v~l~~~~~~---------~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~ 86 (598)
T PRK10785 16 QSKDQLLITLWLTGEDPPQRVMLRCEPDN---------EEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHD 86 (598)
T ss_pred cCCCEEEEEEEEcCCCceEEEEEEEEcCC---------CEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCC
Confidence 367789999998754 47777654322 1224556432222 125899999731 234577889986432
Q ss_pred CCCCCccccCceeeeCccccccccccccCccccccccccccccCCCCCCCCCCCCCCCCCCCCCeEEEEEecccccCCCC
Q 003977 191 DWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLPNIPEKDLVIYEMNVRAFTGDES 270 (782)
Q Consensus 191 ~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~p~~~~~~~vIYei~v~~Ft~~~~ 270 (782)
+. +..+- ..++. . .......|.+..... ++.|++++|||||+|++|.+++.
T Consensus 87 ----~~------~~~~~--------~g~~~--~--------~~~~~~~f~~~~~~~-~P~W~~~~v~YqIfpDRF~ng~~ 137 (598)
T PRK10785 87 ----RQ------RWFTP--------QGFSR--R--------PPARLEQFAVDVPDQ-GPQWVADQVFYQIFPDRFARSLP 137 (598)
T ss_pred ----EE------EEEcC--------Cceee--c--------cCCCccceEeeCCCC-CCchhhcCEEEEechhhhcCCCc
Confidence 11 11111 00000 0 000001123222222 33466999999999999998766
Q ss_pred CCCC------------------------------CCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCC
Q 003977 271 SGLD------------------------------PEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRD 320 (782)
Q Consensus 271 ~g~~------------------------------~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~ 320 (782)
++.. ...+|||+||++||||||+||||+|||+||+++ +
T Consensus 138 ~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s----------~-- 205 (598)
T PRK10785 138 REAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPIFTA----------P-- 205 (598)
T ss_pred ccCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHHHcCCCEEEeCCcccC----------C--
Confidence 3211 124799999999999999999999999999987 2
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccC--------
Q 003977 321 HMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRG-------- 392 (782)
Q Consensus 321 ~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~-------- 392 (782)
.+|||++.||++|||+|||. ++|++||++||++||+||||+|+|||+. +|+|+.....
T Consensus 206 ---s~hgYd~~Dy~~iDp~~Gt~--------~df~~Lv~~aH~rGikVilD~V~NH~~~---~~~~f~~~~~~~~ga~~~ 271 (598)
T PRK10785 206 ---SVHKYDTEDYRHVDPQLGGD--------AALLRLRHATQQRGMRLVLDGVFNHTGD---SHPWFDRHNRGTGGACHH 271 (598)
T ss_pred ---CCCCcCcccccccCcccCCH--------HHHHHHHHHHHHCCCEEEEEECCCcCCC---CCHHHHHhhccccccccC
Confidence 57999999999999999998 9999999999999999999999999997 6888754321
Q ss_pred CCC--CcceeeCCCCCccCcCCC--CCCCCCCCHHHHHHHHH----HHHHHHHh-cCccEEEEccccccccCCCCCCCCC
Q 003977 393 IDN--KVYYMVDGTGQLLNYAGC--GNTLNCNHPVVMELILD----SLRHWVVE-YHVDGFRFDLASVLCRGTDGSPLNA 463 (782)
Q Consensus 393 ~~~--~~yy~~d~~g~~~~~~~~--~~~ln~~~p~v~~~i~d----~l~~W~~e-~gVDGFR~D~a~~l~~~~~g~~~~~ 463 (782)
.+. ..||.+.+.+.+.+|.+. .|+||++||+|+++|++ ++++|+++ |||||||+|+|..+.... .....
T Consensus 272 ~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~--~~~~~ 349 (598)
T PRK10785 272 PDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGG--GARNN 349 (598)
T ss_pred CCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhcccc--Ccccc
Confidence 111 347777766666666654 58999999999999995 79999986 999999999999886531 12223
Q ss_pred hHHHHHHHh--ccccCCceEEecccCCCCccccCCCCCcccchhhch-hHHHHHHHHHhCCC-------CchhhHHHHhh
Q 003977 464 PPLIRAIAK--DAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNG-KYRDDLRKFIKGDP-------GMKGILATRIS 533 (782)
Q Consensus 464 ~~~l~~i~~--~~~~~~~~ligE~w~~~~~~~~g~~~~~~~~~~~n~-~f~~~i~~~~~g~~-------~~~~~~~~~l~ 533 (782)
..+++++.+ +...|++++|||.|.....++.+... .+.+|+ .|...++.++.+.. .....+...+.
T Consensus 350 ~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~~~----d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 425 (598)
T PRK10785 350 LQHVAGITQAAKEENPEAYVLGEHFGDARQWLQADVE----DAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMD 425 (598)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEeccCChhhhccCccc----cccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHH
Confidence 457777765 34678999999999765444444321 256775 57788888887532 11233333332
Q ss_pred cCccccccCCCCCcceEEEeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHH
Q 003977 534 GSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNF 613 (782)
Q Consensus 534 ~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a 613 (782)
.....+. .......+||++|||+.|+..++.. ..++++++
T Consensus 426 ~~~~~~~--~~~~~~~~n~l~nHD~~R~~~~~~~--------------------------------------~~~~~kla 465 (598)
T PRK10785 426 EYRAGLP--HQQQLRQFNQLDSHDTARFKTLLGG--------------------------------------DKARMPLA 465 (598)
T ss_pred HHHHhCC--HHHHHHhhhccCCCccchhhhhhCC--------------------------------------CHHHHHHH
Confidence 2111111 0011245799999999987554310 02457889
Q ss_pred HHHHHHcCCeeeEeccccccCccCCCCCCCCCCCCCCccCCCccccccchHHHHHHHHHHHHhcCCCCCCCCccccCcce
Q 003977 614 HLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVT 693 (782)
Q Consensus 614 ~~~ll~~pGiP~iy~GdE~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~ 693 (782)
++++||+||+||||||||+|+++.. .++.|.+|+|+... ...++++++|+||+|||++|+|+.|++..+
T Consensus 466 ~~ll~t~pGiP~IYYGdE~G~~g~~------dp~~R~~m~W~~~~-~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l---- 534 (598)
T PRK10785 466 LVWLFTWPGVPCIYYGDEVGLDGGN------DPFCRKPFPWDEAK-QDGALLALYQRMIALRKKSQALRRGGCQVL---- 534 (598)
T ss_pred HHHHHhCCCCcEEEeeeeccccCCC------CCCccCCcCCCccc-CchHHHHHHHHHHHHHhhCcccccCcEEEE----
Confidence 9999999999999999999997642 34567899998754 345899999999999999999999987543
Q ss_pred eeccccCCCCCcEEEEEEEcCCCCeEEEEEeCCCCcEEEEcCC--CCCCCCeEEE
Q 003977 694 WHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPP--PPPKRQWFRV 746 (782)
Q Consensus 694 ~~~~~~~~~~~~vlaf~R~~~~~~~~lVv~N~~~~~~~~~Lp~--~~~~~~w~~l 746 (782)
..++.+++|.|..+ ++.++|++|.+ ..+++.||. ...++.|..+
T Consensus 535 -------~~~~~v~af~R~~~-~~~vlVviN~s-~~~~v~lp~~~~~~~~~~~~~ 580 (598)
T PRK10785 535 -------YAEGNVVVFARVLQ-QQRVLVAINRG-EACEVVLPASPLLNVAQWQRK 580 (598)
T ss_pred -------EeCCCEEEEEEECC-CCEEEEEEECC-CCeEEecccccccCCcceeec
Confidence 23467999999887 78999999999 678888885 3334556543
No 20
>PLN02960 alpha-amylase
Probab=100.00 E-value=2.8e-63 Score=571.18 Aligned_cols=511 Identities=20% Similarity=0.268 Sum_probs=333.8
Q ss_pred EEEEEEeCCCCCCceEEEEEecCCCCCCCccccCceeeeCccccccccccccCccccccccccccccCC---CCCCCCCC
Q 003977 167 IWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFE---SLPFDWGD 243 (782)
Q Consensus 167 vW~~~v~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~w~~ 243 (782)
+|+.+||++ .+|.+|+|+|+..+. ....+||||+.+.....-+ ....++.+ ..+|+|.+
T Consensus 326 w~~~~ip~~-~hG~~Yky~v~~~~g---------~~~~vdpyA~~~qp~~~~~--------~~~~v~~d~~~~~~y~W~~ 387 (897)
T PLN02960 326 WLKKYIPAI-PHGSKYRVYFNTPDG---------PLERVPAWATYVLPDPDGK--------QWYAIHWEPPPEEAYKWKF 387 (897)
T ss_pred EEEEEccCC-CCCCEEEEEEEeCCC---------ceEECCCcceeEeecCCCc--------cceEEEeCCCCCCCCCCCC
Confidence 777888875 479999999986431 1246899999873211100 01112222 34699986
Q ss_pred CCCCCCCCCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHhh-chHHHHcCCcEEEECCccccchhhhhhcCCCCCCC
Q 003977 244 NYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHM 322 (782)
Q Consensus 244 ~~~~p~~~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~-LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~ 322 (782)
+ . |. +++++|||||||+.|+.. .+ .|+|++++++ |||||+||||+||||||+++ + .
T Consensus 388 ~-~-p~-~~~~~vIYElHvg~~~~e--~~-----~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~----------~---~ 444 (897)
T PLN02960 388 E-R-PK-VPKSLRIYECHVGISGSE--PK-----ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEH----------K---D 444 (897)
T ss_pred C-C-CC-CCCCcEEEEEecccccCC--CC-----CCCHHHHHHHHHHHHHHcCCCEEEECCcccC----------C---C
Confidence 5 2 33 457899999999988642 22 3999999977 99999999999999999998 2 1
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeC
Q 003977 323 VNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVD 402 (782)
Q Consensus 323 ~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d 402 (782)
..+|||++++||+|+++|||. +|||+||++||++||+||||+|+||++.+. .-.+..|++. +..||..+
T Consensus 445 ~~swGY~~~~yfa~~~~yGtp--------~dfk~LVd~aH~~GI~VILDvV~NH~~~d~--~~~L~~FDG~-~~~Yf~~~ 513 (897)
T PLN02960 445 YSSVGYKVTNFFAVSSRFGTP--------DDFKRLVDEAHGLGLLVFLDIVHSYAAADE--MVGLSLFDGS-NDCYFHSG 513 (897)
T ss_pred CCCCCCCcccCCCcccccCCH--------HHHHHHHHHHHHCCCEEEEEecccccCCcc--ccchhhcCCC-ccceeecC
Confidence 468999999999999999997 999999999999999999999999999732 1123356553 22344433
Q ss_pred CCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEcccc-ccccCC-----CC---------CCCCChHHH
Q 003977 403 GTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS-VLCRGT-----DG---------SPLNAPPLI 467 (782)
Q Consensus 403 ~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~-~l~~~~-----~g---------~~~~~~~~l 467 (782)
..+. ...+|+ ..||+.+++||++|+++++||++||||||||||++. +++.+. .| ...++..+|
T Consensus 514 ~~g~-~~~WG~-~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL 591 (897)
T PLN02960 514 KRGH-HKRWGT-RMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYL 591 (897)
T ss_pred CCCc-cCCCCC-cccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHH
Confidence 3332 233343 568999999999999999999999999999999764 444331 11 123455677
Q ss_pred HHHHh--ccccCCceEEecccCCCCccc----cCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCcccccc
Q 003977 468 RAIAK--DAILSRCKIIAEPWDCRGLYL----VGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRV 541 (782)
Q Consensus 468 ~~i~~--~~~~~~~~ligE~w~~~~~~~----~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~ 541 (782)
+.++. ....|++++|||....-.... .|+ ......||+.+++.+..+++.... .......+.++...
T Consensus 592 ~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GG---LGFDYkwnmG~~~d~l~~l~~~~~-r~~~~~~l~~s~~~--- 664 (897)
T PLN02960 592 ILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGG---LGFDYYVNLSPSEMWLSLLENVPD-QEWSMSKIVSTLVK--- 664 (897)
T ss_pred HHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCC---CCcccccCCCcHHHHHHHHHhCcC-CCCChhccEeeecc---
Confidence 77776 355799999999654321111 111 112278999999999988876542 11112234333221
Q ss_pred CCCCCcceEEEeeccCCC-----CchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 003977 542 NKRKPYHSINFIIAHDGF-----TLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLA 616 (782)
Q Consensus 542 ~~~~p~~~vnfi~~HD~~-----tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ 616 (782)
....+...++|++|||+. ++.+.+.... ..++- .......+......+..++++
T Consensus 665 ~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~----------------~~k~~-----~~~~~~lRa~al~~~~rllt~ 723 (897)
T PLN02960 665 NKENADKMLSYAENHNQSISGGKSFAEILLGKN----------------KESSP-----AVKELLLRGVSLHKMIRLITF 723 (897)
T ss_pred CcCCcceEEEEecCcCccccCcccHHHHCCCch----------------hhhhc-----ccChhhhhhhhHHHHHHHHHH
Confidence 124567889999999983 2222211000 00000 000000011111122233444
Q ss_pred HHHcCCeeeEeccccccCccCC------CCCCCCCCCCCCccCCCcccc-ccchHHHHHHHHHHHHhcCCCCCCCCcccc
Q 003977 617 LMVSQGTPMMLMGDEYGHTRYG------NNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNI 689 (782)
Q Consensus 617 ll~~pGiP~iy~GdE~g~~~~g------~~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~paL~~g~~~~~ 689 (782)
++ .||+||+|||+|||+.... ++.++ ....++|+..+. .+..+++|+|+|++||+++|+|+.+..
T Consensus 724 ~~-~Pg~pLlFMG~EFGh~e~~~~PdP~n~~tf----~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~--- 795 (897)
T PLN02960 724 TL-GGSAYLNFMGNEFGHPERVEFPRASNNFSF----SLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLP--- 795 (897)
T ss_pred Hh-CCCCCEeeCccccCChhhhhCcCCCCcccc----ccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcc---
Confidence 44 4999999999999985421 11111 235689998664 356899999999999999999976543
Q ss_pred CcceeeccccCCCCCcEEEEEEEcCCCCeEEEEEeCCCC----cEEEEcCCCCCCCCeEEEecCCCCC---CCCCCC---
Q 003977 690 NDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDF----FVKVSLPPPPPKRQWFRVVDTNLES---PDDIVP--- 759 (782)
Q Consensus 690 ~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lVv~N~~~~----~~~~~Lp~~~~~~~w~~l~~t~~~~---~~~~~~--- 759 (782)
|... .+.+++||+|.|. .++||+|++.. ...+.+| ..+.|++|++|+... ...+..
T Consensus 796 ----~i~~--~d~~~~Viaf~R~-----~llvV~NFsp~~~~~~Y~vgvP---~~G~y~eilNSD~~~yGG~g~~~~~~~ 861 (897)
T PLN02960 796 ----NIHH--VNDTSMVISFTRG-----PLLFAFNFHPTNSYEEYEVGVE---EAGEYELILNTDEVKYGGQGRLTEDQY 861 (897)
T ss_pred ----eeee--ecCCCCEEEEEeC-----CeEEEEeCCCCCcCcCceECCC---CCCcEEEEEeCchhhcCCCCccCCCcc
Confidence 2211 2456789999992 49999999964 2333344 357999999997543 111100
Q ss_pred ----CCC----CCCCceEEEcCcEEEEEEe
Q 003977 760 ----EGA----AGTGSTYNLSPYSSILLEA 781 (782)
Q Consensus 760 ----~~~----~~~~~~i~l~p~s~~vl~~ 781 (782)
... ...+..|.|+|++++||+.
T Consensus 862 ~~~t~~~~~~g~~~si~i~LPp~sa~v~k~ 891 (897)
T PLN02960 862 LQRTKSKRIDGLRNCLELTLPSRSAQVYKL 891 (897)
T ss_pred eeeccccccCCCCceEEEEeCCCEEEEEEE
Confidence 000 0123468999999999975
No 21
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=3.9e-61 Score=553.21 Aligned_cols=438 Identities=18% Similarity=0.263 Sum_probs=310.3
Q ss_pred CCCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCC
Q 003977 250 IPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYS 329 (782)
Q Consensus 250 ~~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~ 329 (782)
.||+++|||||+|++|++++.++. |||+||+++||||++||||+|||+||+++ | ...|||+
T Consensus 6 ~W~~~~v~Yqi~~~~f~d~~~~~~-----Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~----------~----~~~~gY~ 66 (551)
T PRK10933 6 HWWQNGVIYQIYPKSFQDTTGSGT-----GDLRGVTQRLDYLQKLGVDAIWLTPFYVS----------P----QVDNGYD 66 (551)
T ss_pred hhhhcCeEEEEEchHhhcCCCCCC-----cCHHHHHHhhHHHHhCCCCEEEECCCCCC----------C----CCCCCCC
Confidence 378999999999999998877665 99999999999999999999999999976 2 2468999
Q ss_pred CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCC--CcceeeCC----
Q 003977 330 TINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDN--KVYYMVDG---- 403 (782)
Q Consensus 330 ~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~--~~yy~~d~---- 403 (782)
+.||++|+++|||. ++|++||++||++||+||||+|+||++. +|+|+......+. ..||.+.+
T Consensus 67 ~~d~~~id~~~Gt~--------~d~~~lv~~~h~~gi~vilD~V~NH~s~---~~~wf~~~~~~~~~y~d~y~~~~~~~~ 135 (551)
T PRK10933 67 VANYTAIDPTYGTL--------DDFDELVAQAKSRGIRIILDMVFNHTST---QHAWFREALNKESPYRQFYIWRDGEPE 135 (551)
T ss_pred cccCCCcCcccCCH--------HHHHHHHHHHHHCCCEEEEEECCCCccC---chhHHHhhcCCCCCCcCceEecCCCCC
Confidence 99999999999998 9999999999999999999999999986 7888765432222 34665531
Q ss_pred ---CCCcc-------------------CcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCC--CCC
Q 003977 404 ---TGQLL-------------------NYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGT--DGS 459 (782)
Q Consensus 404 ---~g~~~-------------------~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~--~g~ 459 (782)
..... .|...+++||++||+|+++|++++++|+ ++||||||||+++++..+. ...
T Consensus 136 ~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~ 214 (551)
T PRK10933 136 TPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDD 214 (551)
T ss_pred CCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCC
Confidence 11000 0112368999999999999999999999 7999999999999997652 110
Q ss_pred C-----------CCChHHHHHHHhccc-cCCceEEecccCCCC----ccccCCCCCcccchhhchhHHHHHHHHHhCCCC
Q 003977 460 P-----------LNAPPLIRAIAKDAI-LSRCKIIAEPWDCRG----LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPG 523 (782)
Q Consensus 460 ~-----------~~~~~~l~~i~~~~~-~~~~~ligE~w~~~~----~~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~ 523 (782)
. .+...+++++.+... .++++++||.|.... .|....-.. ..+...|......++.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vgE~~~~~~~~~~~y~~~~~~~----~~~~fnf~~~~~~~~~~~~~ 290 (551)
T PRK10933 215 LDGDGRRFYTDGPRAHEFLQEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSE----LSMTFNFHHLKVDYPNGEKW 290 (551)
T ss_pred cccccccccCCChHHHHHHHHHHHHhhcccCcEEEEeecCCCHHHHHHhhcccCCe----eeeEecHHHhhhhhccCCcc
Confidence 0 112457777765422 235789999986421 111000000 11223344444455544321
Q ss_pred -----chhhHHHHhhcCccccccCCCCCcceEEEeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCC
Q 003977 524 -----MKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETD 598 (782)
Q Consensus 524 -----~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~ 598 (782)
....+...+.. +...........+|++|||..|+...+.. .
T Consensus 291 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~fl~NHD~~R~~sr~g~-----------------------------~- 336 (551)
T PRK10933 291 TLAKPDFVALKTLFRH----WQQGMHNVAWNALFWCNHDQPRIVSRFGD-----------------------------E- 336 (551)
T ss_pred cccccCHHHHHHHHHH----HHHhhcccCeeccccCCCCcccHHHHcCC-----------------------------c-
Confidence 11122222211 11111112355789999999887544310 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCC-------------------------------CCCCCCCC
Q 003977 599 DASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGN-------------------------------NNSYGHDT 647 (782)
Q Consensus 599 ~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~-------------------------------~n~y~~~~ 647 (782)
...+...++++++++||+||+|+||||||+||++..- -+.-.++.
T Consensus 337 ----~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~ 412 (551)
T PRK10933 337 ----GEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDN 412 (551)
T ss_pred ----hhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCC
Confidence 0123345678888999999999999999999987310 01124567
Q ss_pred CCCccCCCccc--------------------------cccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCC
Q 003977 648 AINNFQWGQLE--------------------------TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDN 701 (782)
Q Consensus 648 ~~~~~~W~~~~--------------------------~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~ 701 (782)
+|.||+|+... ..+.++++|||+||+|||++|+|+.|++... ..
T Consensus 413 ~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~----------~~ 482 (551)
T PRK10933 413 SRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDL----------LP 482 (551)
T ss_pred CccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEe----------cc
Confidence 89999998754 1335899999999999999999999987643 12
Q ss_pred CCCcEEEEEEEcCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCceEEEcCcEEEEEEe
Q 003977 702 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEA 781 (782)
Q Consensus 702 ~~~~vlaf~R~~~~~~~~lVv~N~~~~~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~~vl~~ 781 (782)
.++.|++|.|..+ ++.++||+|++.+++++.++.. .+.|+.++++.... . .....++|+|++++|+..
T Consensus 483 ~~~~v~af~R~~~-~~~~lvv~N~s~~~~~~~~~~~--~~~~~~~l~~~~~~----~-----~~~~~~~L~p~~~~~~~~ 550 (551)
T PRK10933 483 NHPSLWCYRREWQ-GQTLLVIANLSREPQPWQPGQM--RGNWQLLMHNYEEA----S-----PQPCAMTLRPFEAVWWLQ 550 (551)
T ss_pred CCCcEEEEEEEcC-CcEEEEEEECCCCCeeeecCcc--cCCceEEeecCccc----c-----CCCCcEEECCCeEEEEEe
Confidence 3457999999887 7899999999999999998832 35788888653111 0 011358999999999987
Q ss_pred C
Q 003977 782 K 782 (782)
Q Consensus 782 k 782 (782)
|
T Consensus 551 ~ 551 (551)
T PRK10933 551 K 551 (551)
T ss_pred C
Confidence 5
No 22
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=9.1e-61 Score=551.18 Aligned_cols=435 Identities=19% Similarity=0.269 Sum_probs=306.7
Q ss_pred CCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCC
Q 003977 251 PEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST 330 (782)
Q Consensus 251 ~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~ 330 (782)
||+++|||||+|++|++++.++. |||+||+++||||++||||+|||+||+++ + ...+||++
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~-----G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~----------~----~~~~gY~~ 61 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGT-----GDLRGIIEKLDYLKKLGVDYIWLNPFYVS----------P----QKDNGYDV 61 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCc-----cCHHHHHHhHHHHHHcCCCEEEECCcccC----------C----CCCCCCCc
Confidence 68999999999999998877665 99999999999999999999999999987 2 24579999
Q ss_pred CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCC--CcceeeCC-CCCc
Q 003977 331 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDN--KVYYMVDG-TGQL 407 (782)
Q Consensus 331 ~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~--~~yy~~d~-~g~~ 407 (782)
.||++|+|+|||. ++|++||++||++||+||||+|+|||+. +|+|+......+. ..||.+.+ .+..
T Consensus 62 ~d~~~id~~~Gt~--------~~~~~lv~~ah~~gi~vilD~v~NH~~~---~~~~f~~~~~~~~~y~~~y~~~~~~~~~ 130 (543)
T TIGR02403 62 SDYYAINPLFGTM--------ADFEELVSEAKKRNIKIMLDMVFNHTST---EHEWFKKALAGDSPYRDFYIWRDPKGKP 130 (543)
T ss_pred cccCccCcccCCH--------HHHHHHHHHHHHCCCEEEEEECcccccc---chHHHHHhhcCCCcccCceEecCCCCCC
Confidence 9999999999998 9999999999999999999999999986 7888764322222 35665531 1110
Q ss_pred ------------------------cCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCC---
Q 003977 408 ------------------------LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP--- 460 (782)
Q Consensus 408 ------------------------~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~--- 460 (782)
..|...+++||++||+|+++|+++++||+ ++||||||||++++|..+.....
T Consensus 131 ~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~ 209 (543)
T TIGR02403 131 PTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEI 209 (543)
T ss_pred CCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCC
Confidence 01122468999999999999999999999 58999999999999975421110
Q ss_pred ----------CCChHHHHHHHhcc-ccCCceEEecccCCCCc----cccCCCCCcccchhhchhHHHHHHHHHhCCC---
Q 003977 461 ----------LNAPPLIRAIAKDA-ILSRCKIIAEPWDCRGL----YLVGKFPNWDRWAEWNGKYRDDLRKFIKGDP--- 522 (782)
Q Consensus 461 ----------~~~~~~l~~i~~~~-~~~~~~ligE~w~~~~~----~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~--- 522 (782)
.....+++++.+.. ..+++++|||.|..... |....-... ...|| |......+..+..
T Consensus 210 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~lvgE~~~~~~~~~~~y~~~~~~~~--d~~~n--f~~~~~~~~~~~~~~~ 285 (543)
T TIGR02403 210 GDGRRFYTDGPRVHEYLQEMNQEVFGDNDSVTVGEMSSTTIENCIRYSNPENKEL--SMVFT--FHHLKVDYPNGEKWTL 285 (543)
T ss_pred CCCccccCCChHHHHHHHHHHHHhhccCCeEEEEEeCCCCHHHHHhhhCCCCCee--CeEEC--hhhhhchhcccccccc
Confidence 01235777775421 16789999999964311 111000001 13344 3333344443321
Q ss_pred --CchhhHHHHhhcCccccccCCCCCcceEEEeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChH
Q 003977 523 --GMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDA 600 (782)
Q Consensus 523 --~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~ 600 (782)
.....+...+......+ .......++|++|||+.|+...+...
T Consensus 286 ~~~~~~~l~~~~~~~~~~~---~~~~~~~~~fl~NHD~~R~~s~~g~~-------------------------------- 330 (543)
T TIGR02403 286 AKFDFAKLKEIFSTWQTGM---QAGGGWNALFWNNHDQPRAVSRFGDD-------------------------------- 330 (543)
T ss_pred CCCCHHHHHHHHHHHHHhc---cccCcceeeecCCCChhhHHHhcCCc--------------------------------
Confidence 11112222221111001 11223457899999998875544100
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCCC-------------------------------CCCCCCCCC
Q 003977 601 SIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN-------------------------------NSYGHDTAI 649 (782)
Q Consensus 601 ~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~-------------------------------n~y~~~~~~ 649 (782)
...+.+.++++++++||+||+||||||||+||++.... +...++++|
T Consensus 331 --~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~R 408 (543)
T TIGR02403 331 --GEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSR 408 (543)
T ss_pred --hhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCc
Confidence 00123456788889999999999999999999874210 112346789
Q ss_pred CccCCCccc--------------------------cccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCC
Q 003977 650 NNFQWGQLE--------------------------TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYD 703 (782)
Q Consensus 650 ~~~~W~~~~--------------------------~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~ 703 (782)
.||+|+... ..+.++++|||+||+|||++|+|+.|++.... ..+
T Consensus 409 tPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~~----------~~~ 478 (543)
T TIGR02403 409 TPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFLL----------PDD 478 (543)
T ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEee----------cCC
Confidence 999998642 12468999999999999999999999876431 223
Q ss_pred CcEEEEEEEcCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCceEEEcCcEEEEEE
Q 003977 704 SKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 780 (782)
Q Consensus 704 ~~vlaf~R~~~~~~~~lVv~N~~~~~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~~vl~ 780 (782)
+.|++|.|..+ ++.++||+|++.+++++.||... ..|..++.+..... ....++|+|++++|+.
T Consensus 479 ~~v~a~~R~~~-~~~~lVv~N~s~~~~~~~l~~~~--~~~~~~~~~~~~~~----------~~~~~~L~p~~~~i~~ 542 (543)
T TIGR02403 479 PSVWAYTRTYK-NQKLLVINNFYGEEKTIELPLDL--LSGKILLSNYEEAE----------KDAKLELKPYEAIVLL 542 (543)
T ss_pred CcEEEEEEEcC-CcEEEEEEECCCCCeEeeCCccC--cCceEEEecCCCcC----------CCCcEEECCceEEEEe
Confidence 47999999887 78999999999999999998643 45676766532110 1256899999999986
No 23
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=4.8e-60 Score=546.38 Aligned_cols=461 Identities=22% Similarity=0.342 Sum_probs=305.1
Q ss_pred CCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCC
Q 003977 251 PEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST 330 (782)
Q Consensus 251 ~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~ 330 (782)
||+++|||||+|++|++++.+|. |||+||+++||||++||||+|||+||+++ + ..+|||++
T Consensus 2 W~~~~viYqi~~~~f~d~~~~~~-----Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~----------~----~~~~gY~~ 62 (539)
T TIGR02456 2 WYKDAVFYEVHVRSFFDSNGDGI-----GDFPGLTSKLDYLKWLGVDALWLLPFFQS----------P----LRDDGYDV 62 (539)
T ss_pred ccccceEEEEehhHhhcCCCCCc-----cCHHHHHHhHHHHHHCCCCEEEECCCcCC----------C----CCCCCCCc
Confidence 68999999999999999876654 99999999999999999999999999987 2 24689999
Q ss_pred CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCC-CC--CcceeeCCCC-C
Q 003977 331 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGI-DN--KVYYMVDGTG-Q 406 (782)
Q Consensus 331 ~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~-~~--~~yy~~d~~g-~ 406 (782)
.||++|+|+|||. ++||+||++||++||+||||+|+||++. +|+|+...... ++ +.||.+.+.+ .
T Consensus 63 ~dy~~vd~~~Gt~--------~df~~Lv~~ah~~Gi~vilD~V~NH~s~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 131 (539)
T TIGR02456 63 SDYRAILPEFGTI--------DDFKDFVDEAHARGMRVIIDLVLNHTSD---QHPWFQEARSNPDGPYRDFYVWSDTDEK 131 (539)
T ss_pred ccccccChhhCCH--------HHHHHHHHHHHHCCCEEEEEeccCcCCC---CCHHHHHHhhCCCCCCCceEEecCCCcc
Confidence 9999999999998 9999999999999999999999999986 77887533211 11 3566552111 0
Q ss_pred c------------c--------------CcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCC
Q 003977 407 L------------L--------------NYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 460 (782)
Q Consensus 407 ~------------~--------------~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~ 460 (782)
+ . .+...+|+||++||+||++|++++++|+ ++||||||||+++++.+...+..
T Consensus 132 ~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~~~ 210 (539)
T TIGR02456 132 YKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGTSC 210 (539)
T ss_pred cccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCCcc
Confidence 0 0 1233478999999999999999999999 59999999999988865422111
Q ss_pred CC---ChHHHHHHHh--ccccCCceEEecccCCCC---ccccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHh
Q 003977 461 LN---APPLIRAIAK--DAILSRCKIIAEPWDCRG---LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRI 532 (782)
Q Consensus 461 ~~---~~~~l~~i~~--~~~~~~~~ligE~w~~~~---~~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l 532 (782)
.. ..++++++.+ +...|++++|||.|.... .|. +...+......+|+.+...+...+... ....+...+
T Consensus 211 ~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~~~~~~~~~y~-~~~~~~~~d~~f~f~l~~~~~~~l~~~--~~~~l~~~l 287 (539)
T TIGR02456 211 ENLPETHEFLKRLRKMVDREYPGRMLLAEANQWPEEVVAYF-GDEGDPECHMAFNFPVMPRIFMALRRE--DRSPIIDIL 287 (539)
T ss_pred CCCchHHHHHHHHHHHHHHhCCCeEEEEEeCCCHHHHHHhh-CCCCCCeeeeEEChhhhhhhhcccccC--CHHHHHHHH
Confidence 11 1346777655 235689999999753211 111 110000112456666554433222211 112222222
Q ss_pred hcCccccccCCCCCcceEEEeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHH-HHH--HHHH
Q 003977 533 SGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASI-KAL--RSRQ 609 (782)
Q Consensus 533 ~~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~-~~~--~~~~ 609 (782)
.... . ...+...++|++|||..++.-+......+..+. -+.+.+...+.+. ..++ ..+ ..++
T Consensus 288 ~~~~-~----~~~~~~~~~fl~nHD~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~R~~s~~~~~~~~ 352 (539)
T TIGR02456 288 KETP-D----IPDSCQWCIFLRNHDELTLEMVTDEERDFMYAA-----YAPDPRMRINLGI-----RRRLAPLLDNDRRR 352 (539)
T ss_pred HHhh-h----ccCCCceeeecCCCCccCccccChhhhhhhhhh-----ccCCcchhcccch-----hhhhhhcccccHHH
Confidence 2111 1 112345678999999976421111000000000 0000000000000 0000 000 1345
Q ss_pred HHHHHHHHHHcCCeeeEeccccccCccCCCCCCCCCCCCCCccCCCccc-------------------------------
Q 003977 610 MKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE------------------------------- 658 (782)
Q Consensus 610 ~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~n~y~~~~~~~~~~W~~~~------------------------------- 658 (782)
++++++++||+||+|+||||||+|+.+... ....+..|.+|+|+...
T Consensus 353 ~kla~~~l~tlpG~P~IYYG~EiGm~~~~~--~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~ 430 (539)
T TIGR02456 353 IELLTALLLSLPGSPILYYGDEIGMGDNIW--LGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEA 430 (539)
T ss_pred HHHHHHHHHhCCCceEEEechhhcCcCCCc--cCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHH
Confidence 789999999999999999999999975311 11234567889997631
Q ss_pred --cccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEEcCCCCeEEEEEeCCCCcEEEEcCC
Q 003977 659 --TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPP 736 (782)
Q Consensus 659 --~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lVv~N~~~~~~~~~Lp~ 736 (782)
..+.+++++||+||+|||+||+|+.|++.... ..++++++|.|..+ ++.++|++|++.++++++|+.
T Consensus 431 q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l~----------~~~~~v~~f~R~~~-~~~vlVv~N~s~~~~~v~l~~ 499 (539)
T TIGR02456 431 QLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFLP----------TGNRRVLAFLREYE-GERVLCVFNFSRNPQAVELDL 499 (539)
T ss_pred HhhCcccHHHHHHHHHHHHhcCcccccCceEEEe----------cCCCCEEEEEEEcC-CcEEEEEEeCCCCCEEeeccc
Confidence 12357999999999999999999999876431 22457999999888 789999999999999999876
Q ss_pred CC-CCCCeEEEecCCCCCCCCCCCCCCCCCCceEEEcCcEEEEEE
Q 003977 737 PP-PKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 780 (782)
Q Consensus 737 ~~-~~~~w~~l~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~~vl~ 780 (782)
.. .+..+.+++.+..... +...+..++|+|+++++|+
T Consensus 500 ~~~~~~~~~dl~~~~~~~~-------~~~~~~~~~l~p~~~~~~~ 537 (539)
T TIGR02456 500 SEFAGRVPVELIGGAPFPP-------VGGDGYLLTLGPHGFYWFR 537 (539)
T ss_pred cccccCcceecccCCcccc-------ccCCcceEEECCceEEEEE
Confidence 32 2335666664432110 1112347899999999996
No 24
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1.4e-55 Score=511.08 Aligned_cols=400 Identities=16% Similarity=0.213 Sum_probs=266.0
Q ss_pred CCCCCCCeEEEEEecccccCCCCCCCC-------------CCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhh-
Q 003977 248 PNIPEKDLVIYEMNVRAFTGDESSGLD-------------PEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQ- 313 (782)
Q Consensus 248 p~~~~~~~vIYei~v~~Ft~~~~~g~~-------------~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~- 313 (782)
.+.+|+++|||+|++++|.+++.++.. ..++|||+||+++||||++||||+|||+||++.......
T Consensus 183 ~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~ 262 (683)
T PRK09505 183 APFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGG 262 (683)
T ss_pred CChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCcccccccccccc
Confidence 345689999999999999987743211 134699999999999999999999999999987321110
Q ss_pred hcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCC--C-CCCccccc
Q 003977 314 RRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD--D-ANPYTTSF 390 (782)
Q Consensus 314 ~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~--~-~~~~~~~~ 390 (782)
+..+.. ..+.+|||++.||+.+|++|||. +|||+||++||++||+||||+|+||++... + .+.++...
T Consensus 263 g~~g~~-~~~~yhgY~~~D~~~id~~~Gt~--------~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~ 333 (683)
T PRK09505 263 GTKGDF-PHYAYHGYYTLDWTKLDANMGTE--------ADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGAL 333 (683)
T ss_pred ccccCC-CcCCCCCCCccccccCCCCCCCH--------HHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhh
Confidence 000000 01468999999999999999998 999999999999999999999999999521 1 11111110
Q ss_pred -------cCCCCCcceeeC-----------------CCCCccCcCC------------------------CCCCCCCC--
Q 003977 391 -------RGIDNKVYYMVD-----------------GTGQLLNYAG------------------------CGNTLNCN-- 420 (782)
Q Consensus 391 -------~~~~~~~yy~~d-----------------~~g~~~~~~~------------------------~~~~ln~~-- 420 (782)
....+..|+.|. ....+.+|++ ..|+||++
T Consensus 334 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~ 413 (683)
T PRK09505 334 YLSGDENKKTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTEST 413 (683)
T ss_pred hhhccccccccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCc
Confidence 000011221111 0011111111 13556655
Q ss_pred ---------------------CHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHH----HHHH---h
Q 003977 421 ---------------------HPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLI----RAIA---K 472 (782)
Q Consensus 421 ---------------------~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l----~~i~---~ 472 (782)
||+|+++|++++++|++++||||||+|+++++..+++ ....+.+ ++.. .
T Consensus 414 ~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW---~~~~~~~~~~l~~~k~~~~ 490 (683)
T PRK09505 414 QASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAW---QQLKQEASAALAEWKKANP 490 (683)
T ss_pred cccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHH---HHHHHHHHHHHHHHHHhcc
Confidence 5699999999999999999999999999999976542 1111111 1111 1
Q ss_pred cc--ccCCceEEecccCCCC---ccccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccCCCCCc
Q 003977 473 DA--ILSRCKIIAEPWDCRG---LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPY 547 (782)
Q Consensus 473 ~~--~~~~~~ligE~w~~~~---~~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~ 547 (782)
++ ..++++++||.|..+. .+....|+ +.+|+.|...+.+...........+ ..+.. .....
T Consensus 491 d~~~~~~~~~~vGEvw~~~~~~~~y~~~~fD-----sv~NF~~~~~~~~~~~~~~~l~~~~-~~~~~--------~~~~~ 556 (683)
T PRK09505 491 DKALDDAPFWMTGEAWGHGVMKSDYYRHGFD-----AMINFDYQEQAAKAVDCLAQMDPTY-QQMAE--------KLQDF 556 (683)
T ss_pred ccccccCCeEEEEEecCCchhhHHHHhhcCc-----cccCchHHHHHHHHHHHHHHHHHHH-HHHhh--------hcCcc
Confidence 11 1235899999996542 22222232 7788888776554432111111111 11110 01223
Q ss_pred ceEEEeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEe
Q 003977 548 HSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMML 627 (782)
Q Consensus 548 ~~vnfi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy 627 (782)
..++|++|||+.|+..... . ..+++++++++||+||+|+||
T Consensus 557 ~~l~FLdNHDt~Rf~s~~~-----------------------------~----------~~~~klAaall~tlpGiP~IY 597 (683)
T PRK09505 557 NVLSYLSSHDTRLFFEGGQ-----------------------------S----------YAKQRRAAELLLLAPGAVQIY 597 (683)
T ss_pred ceeecccCCChhhhhhhcC-----------------------------c----------hHHHHHHHHHHHhCCCCcEEE
Confidence 5689999999987643321 0 134678899999999999999
Q ss_pred ccccccCccCCCCCCCCCCCCCCccCCCccccccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEE
Q 003977 628 MGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFL 707 (782)
Q Consensus 628 ~GdE~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vl 707 (782)
||||+|+++....+ -...+.|.+|+|+.......+++++||+|++||++||+|+.|++..+ ..+.++
T Consensus 598 YGdEiGm~gg~~g~-DP~~~~R~~M~W~~~~~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l------------~~~~~~ 664 (683)
T PRK09505 598 YGDESARPFGPTGS-DPLQGTRSDMNWQEVSGKSAALLAHWQKLGQFRARHPAIGAGKQTTL------------SLKQYY 664 (683)
T ss_pred echhhCccCCCCCC-CCcccccccCCccccccchHHHHHHHHHHHHHHhhCHHhhCCceEEe------------ccCCEE
Confidence 99999997632100 01124788999986544556899999999999999999999987533 235799
Q ss_pred EEEEEcCCCCeEEEEEeCC
Q 003977 708 AFTLHDNNGADIYLAFNAH 726 (782)
Q Consensus 708 af~R~~~~~~~~lVv~N~~ 726 (782)
+|.|..+ ++.++||+|..
T Consensus 665 aF~R~~~-~d~vlVv~~~~ 682 (683)
T PRK09505 665 AFVREHG-DDKVMVVWAGQ 682 (683)
T ss_pred EEEEEeC-CCEEEEEEeCC
Confidence 9999887 78999999864
No 25
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=2.1e-49 Score=452.40 Aligned_cols=387 Identities=19% Similarity=0.243 Sum_probs=258.7
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCC---------CCCCCCCCCCCCCCc
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFF---------SPMSRYAAGGGGPLK 349 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~---------a~d~~yGt~~~~p~~ 349 (782)
-+|++|++|||||++||||+|||+||+++.+ ...+|||++.||| +|||+|||+
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~------------~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~------ 80 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTS------------GGYDVGYGVYDLFDLGEFDQKGTVRTKYGTK------ 80 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCC------------CCCCCCCCeecccccccccccCCcCcCcCCH------
Confidence 4577999999999999999999999999721 1257999999999 799999998
Q ss_pred hHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCcccc-----------------------c--cCCCC------Ccc
Q 003977 350 ASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS-----------------------F--RGIDN------KVY 398 (782)
Q Consensus 350 ~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~-----------------------~--~~~~~------~~y 398 (782)
+|||+||++||++||+||||+|+||++... .++|+.. | .+.+. ..|
T Consensus 81 --~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (479)
T PRK09441 81 --EELLNAIDALHENGIKVYADVVLNHKAGAD-EKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHW 157 (479)
T ss_pred --HHHHHHHHHHHHCCCEEEEEECcccccCCC-cceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCC
Confidence 999999999999999999999999998532 2334320 0 00000 012
Q ss_pred eeeCCC---------------CCccCcC------------CCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccc
Q 003977 399 YMVDGT---------------GQLLNYA------------GCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV 451 (782)
Q Consensus 399 y~~d~~---------------g~~~~~~------------~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~ 451 (782)
|...+. +...+|. ...++||++||+|+++|++++++|++++||||||+|++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~ 237 (479)
T PRK09441 158 YHFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKH 237 (479)
T ss_pred cCCCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcC
Confidence 221110 0011121 1157999999999999999999999889999999999999
Q ss_pred cccCCCCCCCCChHHHHHHHhccccCCceEEecccCCCCc----cccCCCCCcccchhhchhHHHHHHHHHhCCCCchhh
Q 003977 452 LCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGL----YLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGI 527 (782)
Q Consensus 452 l~~~~~g~~~~~~~~l~~i~~~~~~~~~~ligE~w~~~~~----~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~ 527 (782)
+..++ ...+.+++.+ ...|+++++||.|..... |..+. . ...+.++..+...++..+.+.. ...
T Consensus 238 v~~~f------~~~~~~~~~~-~~~~~~~~vGE~~~~~~~~~~~y~~~~-~--~~~~~~Df~~~~~l~~~~~~~~--~~~ 305 (479)
T PRK09441 238 IDAWF------IKEWIEHVRE-VAGKDLFIVGEYWSHDVDKLQDYLEQV-E--GKTDLFDVPLHYNFHEASKQGR--DYD 305 (479)
T ss_pred CCHHH------HHHHHHHHHH-hcCCCeEEEEeecCCChHHHHHHHHhc-C--CCceEecHHHHHHHHHHHhcCC--ccc
Confidence 97653 1122333321 223689999999976421 22110 0 0114566777777777665421 112
Q ss_pred HHHHhhcCccccccCCCCCcceEEEeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHH
Q 003977 528 LATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRS 607 (782)
Q Consensus 528 ~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~ 607 (782)
+...+... . ....+...+||++|||+.|+..+... ...
T Consensus 306 l~~~~~~~--~---~~~~~~~~~~FldNHD~~R~~~~~~~-------------------------------------~~~ 343 (479)
T PRK09441 306 MRNIFDGT--L---VEADPFHAVTFVDNHDTQPGQALESP-------------------------------------VEP 343 (479)
T ss_pred hHhhhCcc--h---hhcCcccceeeeccccCCCccccccc-------------------------------------ccc
Confidence 22222111 0 12345678999999999886332100 001
Q ss_pred HHHHHHHHHHHHcC-CeeeEeccccccCccCCCCCCCCCCCCCCccCCCccccccchHHHHHHHHHHHHhcCCCCCCCCc
Q 003977 608 RQMKNFHLALMVSQ-GTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDF 686 (782)
Q Consensus 608 ~~~r~a~~~ll~~p-GiP~iy~GdE~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~ 686 (782)
+..++|+++|||+| |+||||||+|+|+.+... ...+++++++||+|||+++ .|++
T Consensus 344 ~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~---------------------~~~l~~~i~~Li~lRk~~~---~G~~ 399 (479)
T PRK09441 344 WFKPLAYALILLREEGYPCVFYGDYYGASGYYI---------------------DMPFKEKLDKLLLARKNFA---YGEQ 399 (479)
T ss_pred cchHHHHHHHHhCCCCceeeEeccccCCCCCcc---------------------cchHHHHHHHHHHHHHHhC---CCCe
Confidence 12468899999999 999999999999865311 1368999999999999853 4554
Q ss_pred cccCcceeeccccCCCCCcEEEEEEEcCCC-CeEEEEEeCCC-CcEEEEcCCCCCCCCeEEEecCCCCCCCCCCCCCCCC
Q 003977 687 LNINDVTWHEDNWDNYDSKFLAFTLHDNNG-ADIYLAFNAHD-FFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAG 764 (782)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~-~~~lVv~N~~~-~~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~~~~~~~~ 764 (782)
... ..++++++|.|....+ +.++|++|.+. ...++.|+....++.|++++...... +... ..
T Consensus 400 ~~~-----------~~~~~~~~~~R~~~~~~~~vvvvinn~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~--~~ 463 (479)
T PRK09441 400 TDY-----------FDHPNCIGWTRSGDEENPGLAVVISNGDAGEKTMEVGENYAGKTWRDYTGNRQET---VTID--ED 463 (479)
T ss_pred eEe-----------ecCCCEEEEEEecCCCCccEEEEEECCCCCcEEEEeCccCCCCEeEhhhCCCCCe---EEEC--CC
Confidence 332 2456899999987632 46888887764 34457787655567788877543211 1100 11
Q ss_pred CCceEEEcCcEEEEEE
Q 003977 765 TGSTYNLSPYSSILLE 780 (782)
Q Consensus 765 ~~~~i~l~p~s~~vl~ 780 (782)
....++|+|.|+.|+.
T Consensus 464 G~~~~~l~~~s~~i~~ 479 (479)
T PRK09441 464 GWGTFPVNGGSVSVWV 479 (479)
T ss_pred CeEEEEECCceEEEeC
Confidence 2247899999999973
No 26
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=5.1e-44 Score=403.87 Aligned_cols=488 Identities=19% Similarity=0.242 Sum_probs=307.1
Q ss_pred CEEEEEEeCCCCCCceEEEEEecCCCCCCCccccCceeeeCccccccccccccCccccccccccccc-cCC-CCCCCCCC
Q 003977 166 DIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTY-EFE-SLPFDWGD 243 (782)
Q Consensus 166 ~vW~~~v~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~w~~ 243 (782)
++|...+|.++ ++..|+..+..+++ . .+ -+.++++.+..... ...+.+.+ +.. ...|.|..
T Consensus 330 ~w~~~~~~~i~-H~s~~k~~~~~~~g----~-~~----RiPaw~~~~~~~~~-------~~~~~~~~w~P~~~~~y~~k~ 392 (872)
T PLN03244 330 AWLKKYIPAIP-HGSKYRLYFNTPDG----P-LE----RIPAWATYVLPDDD-------GKQAFAIHWEPPPEAAHKWKN 392 (872)
T ss_pred ceeecccCCCC-CCCeEEEEEEcCCC----C-cc----cCCCCeeeEEecCC-------CCceeeeEeCCCcccCCccCC
Confidence 48889999876 89999999986542 1 11 14445544432110 00111111 111 23588875
Q ss_pred CCCCCCCCCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCC
Q 003977 244 NYKLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMV 323 (782)
Q Consensus 244 ~~~~p~~~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~ 323 (782)
. .|..+ ..+.|||.||+..+.. ..-|+|+.++++
T Consensus 393 ~--~p~~p-~~lrIYE~HvGms~~e-------~kv~ty~eF~~~------------------------------------ 426 (872)
T PLN03244 393 M--KPKVP-ESLRIYECHVGISGSE-------PKISSFEEFTEK------------------------------------ 426 (872)
T ss_pred C--CCCCC-CCceEEEEEeeecCCC-------CCcccHHHHhhc------------------------------------
Confidence 3 33333 5778999999987543 224999999986
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCC
Q 003977 324 NTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDG 403 (782)
Q Consensus 324 ~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~ 403 (782)
+++||+|+++|||. +|||+||++||++||+||||||+||++.+... .+..|++. +..||..++
T Consensus 427 ------vt~fFApssRYGTP--------eDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~--GL~~fDGt-~~~Yf~~~~ 489 (872)
T PLN03244 427 ------VTNFFAASSRYGTP--------DDFKRLVDEAHGLGLLVFLDIVHSYAAADEMV--GLSLFDGS-NDCYFHTGK 489 (872)
T ss_pred ------cCcccccCcccCCH--------HHHHHHHHHHHHCCCEEEEEecCccCCCcccc--chhhcCCC-ccceeccCC
Confidence 15789999999997 99999999999999999999999999974321 23356553 234665554
Q ss_pred CCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccc-cccccCCC-------C-------CCCCChHHHH
Q 003977 404 TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLA-SVLCRGTD-------G-------SPLNAPPLIR 468 (782)
Q Consensus 404 ~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a-~~l~~~~~-------g-------~~~~~~~~l~ 468 (782)
.|.. ..+|+ ..+|+.+++|+++|+++++||++||||||||||++ ++++.+.. + ...++..+|+
T Consensus 490 ~g~~-~~WGs-~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~ 567 (872)
T PLN03244 490 RGHH-KHWGT-RMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLI 567 (872)
T ss_pred CCcc-CCCCC-ceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHH
Confidence 4433 34455 67999999999999999999999999999999955 67764421 0 1234455666
Q ss_pred HHHh--ccccCCceEEecccCCC-Ccc---ccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccC
Q 003977 469 AIAK--DAILSRCKIIAEPWDCR-GLY---LVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVN 542 (782)
Q Consensus 469 ~i~~--~~~~~~~~ligE~w~~~-~~~---~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 542 (782)
.++. ....|++++|||....- ++. ..|+ ......||+.+++...++++..+..... ...|..+.. .+
T Consensus 568 laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GG---LGFDYKWnMgwmdd~lkylk~~pderw~-~~~ItfsL~---~n 640 (872)
T PLN03244 568 LANEILHALHPKIITIAEDATYYPGLCEPTSQGG---LGFDYYVNLSAPDMWLDFLDNIPDHEWS-MSKIVSTLI---AN 640 (872)
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCC---CCccceecCcchHHHHHHHHhCCCcccC-HHHHhhhhh---cc
Confidence 6665 35679999999965432 111 0111 1123889999999999999876544321 112221110 12
Q ss_pred CCCCcceEEEeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC
Q 003977 543 KRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQG 622 (782)
Q Consensus 543 ~~~p~~~vnfi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pG 622 (782)
.+.....++|.+|||..-..+...... ..+.. -.++. + ....+.+ +...-|++.+++++++|
T Consensus 641 rr~~ek~~aYsESHDqaLvGdKTlaf~----l~d~~--------~y~~~---~--~~~vv~R-g~aLhKMiRllt~~~~G 702 (872)
T PLN03244 641 KEYADKMLSYAENHNQSISGGRSFAEI----LFGAI--------DEDPL---G--GKELLDR-GCSLHKMIRLITFTIGG 702 (872)
T ss_pred cCCcceEEEEecccceeccccchHHhh----hcccc--------ccccc---c--cchhhhh-hhHHHHHHHHHHHHccC
Confidence 233457899999999832211100000 00000 00000 0 0011111 11123344456788999
Q ss_pred ee-eEeccccccCcc------CCCCCCCCCCCCCCccCCCcccc-ccchHHHHHHHHHHHHhcCCCCCCCCccccCccee
Q 003977 623 TP-MMLMGDEYGHTR------YGNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTW 694 (782)
Q Consensus 623 iP-~iy~GdE~g~~~------~g~~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~ 694 (782)
.| ++|||+|||+.. .||+.+|. ..+.+|+.++. ....+.+|+|.|++|++++++|..+.. |
T Consensus 703 ~kkLnFMGNEFGhpe~~dfPr~gN~~s~~----~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~-------w 771 (872)
T PLN03244 703 HAYLNFMGNEFGHPERIEFPMPSNNFSFS----LANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLP-------N 771 (872)
T ss_pred ccceeecccccCCchheeccccCCCcccc----ccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCc-------E
Confidence 88 799999999965 34444432 23579998663 345799999999999999999975432 3
Q ss_pred eccccCCCCCcEEEEEEEcCCCCeEEEEEeCCCC----cEEEEcCCCCCCCCeEEEecCCCCCCCC--------CCC--C
Q 003977 695 HEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDF----FVKVSLPPPPPKRQWFRVVDTNLESPDD--------IVP--E 760 (782)
Q Consensus 695 ~~~~~~~~~~~vlaf~R~~~~~~~~lVv~N~~~~----~~~~~Lp~~~~~~~w~~l~~t~~~~~~~--------~~~--~ 760 (782)
+. +.+.+++||||.|. .++||+|++.. ...+.+|. .+.|++++||+...-.. ... .
T Consensus 772 I~--~~d~e~kVIAF~R~-----~LLfVfNF~P~~sy~dYrIGVp~---~G~Y~eILNSD~~~FGG~g~~~~~~~~t~~~ 841 (872)
T PLN03244 772 IH--HVKDAAMVISFMRG-----PFLFIFNFHPSNSYEGYDVGVEE---AGEYQIILNSDETKYGGQGIIEEDHYLQRSI 841 (872)
T ss_pred Ee--eecCCCCEEEEEec-----CEEEEEeCCCCCCccCCEECCCC---CCeEEEEEeCChhhhCCCCccCCCceeeccc
Confidence 31 12567889999993 49999999964 34444443 67999999998553111 000 0
Q ss_pred C----CCCCCceEEEcCcEEEEEEe
Q 003977 761 G----AAGTGSTYNLSPYSSILLEA 781 (782)
Q Consensus 761 ~----~~~~~~~i~l~p~s~~vl~~ 781 (782)
. ....+..|.|||++++||+.
T Consensus 842 ~~~~~gr~~sl~l~LPprsavVlk~ 866 (872)
T PLN03244 842 NKRIDGLRNCLEVFLPSRTAQVYKL 866 (872)
T ss_pred ccccCCCCceEEEEeCCCEEEEEEE
Confidence 0 01123358899999999975
No 27
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=3.1e-44 Score=398.76 Aligned_cols=344 Identities=19% Similarity=0.264 Sum_probs=228.0
Q ss_pred CCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCC-CCCCCCCCCCCchHHHHHH
Q 003977 278 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM-SRYAAGGGGPLKASWEFKE 356 (782)
Q Consensus 278 ~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d-~~yGt~~~~p~~~~~elk~ 356 (782)
+|+|++|+++||||++||||+|||+|+++. ..++||++.|||.++ ++|||+ +|||+
T Consensus 40 gg~~~~i~~kldyL~~LGvtaIWL~P~~~s---------------~s~hGY~~~D~y~ld~~~fGt~--------~elk~ 96 (428)
T PLN00196 40 GGWYNFLMGKVDDIAAAGITHVWLPPPSHS---------------VSEQGYMPGRLYDLDASKYGNE--------AQLKS 96 (428)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCC---------------CCCCCCCccccCCCCcccCCCH--------HHHHH
Confidence 389999999999999999999999999986 356899999999999 699998 99999
Q ss_pred HHHHHhhCCcEEEEeeecccccCCCCC--CCccccccCCCC---Ccceee----C------CCCCccCc--CCCCCCCCC
Q 003977 357 MVKALHGAGIEVILDVVYNHTNEADDA--NPYTTSFRGIDN---KVYYMV----D------GTGQLLNY--AGCGNTLNC 419 (782)
Q Consensus 357 LV~~~H~~Gi~VIlDvV~NH~~~~~~~--~~~~~~~~~~~~---~~yy~~----d------~~g~~~~~--~~~~~~ln~ 419 (782)
||++||++||+||+|+|+||++....+ ..|. .|.+..+ ..|+.. + ..+.+..+ ....|+||+
T Consensus 97 Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~ 175 (428)
T PLN00196 97 LIEAFHGKGVQVIADIVINHRTAEHKDGRGIYC-LFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDH 175 (428)
T ss_pred HHHHHHHCCCEEEEEECccCcccccccCCCceE-ECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCC
Confidence 999999999999999999999963211 1221 2222111 222211 0 01111111 123589999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHhccccCCceEEecccCCCCccccCCCCC
Q 003977 420 NHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPN 499 (782)
Q Consensus 420 ~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~~~~~~~~~ligE~w~~~~~~~~g~~~~ 499 (782)
+||+|+++|++++++|++++||||||||+++++..+ +++++.+. ..| .++|||.|+.......+...
T Consensus 176 ~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~----------f~~~~v~~-~~p-~f~VGE~W~~~~~~~~~~~~- 242 (428)
T PLN00196 176 LNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAE----------VAKVYIDG-TEP-SFAVAEIWTSMAYGGDGKPE- 242 (428)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHH----------HHHHHHHc-cCC-cEEEEEEeccccccccCCcc-
Confidence 999999999999998888899999999999998644 66765543 344 78999999863211111100
Q ss_pred cccchhhchhHHHHHHHHHhCCCCch-----hhH------HHHhhcC-ccccc-------cCCCCCcceEEEeeccCCCC
Q 003977 500 WDRWAEWNGKYRDDLRKFIKGDPGMK-----GIL------ATRISGS-SDLYR-------VNKRKPYHSINFIIAHDGFT 560 (782)
Q Consensus 500 ~~~~~~~n~~f~~~i~~~~~g~~~~~-----~~~------~~~l~~~-~~~~~-------~~~~~p~~~vnfi~~HD~~t 560 (782)
.+ ...-++.+.+++....+.. -.| ...+.+. ..+.. .....|..+||||+|||+.|
T Consensus 243 ~~-----~~~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r 317 (428)
T PLN00196 243 YD-----QNAHRQELVNWVDRVGGAASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGS 317 (428)
T ss_pred cc-----chhhHHHHHHHHHhcCCccCcceeecccchHHHHHHhcCCchhhhhhcccCcchhhcChhhceeeccCCCCcc
Confidence 00 0112233334443211000 000 0001010 01100 01235678999999999987
Q ss_pred chhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCCC
Q 003977 561 LYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN 640 (782)
Q Consensus 561 l~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~ 640 (782)
+..+... ....++++.+++||+||+||||||+
T Consensus 318 ~~~~~~~--------------------------------------~~~~~~lAyA~iLT~pG~P~IyYg~---------- 349 (428)
T PLN00196 318 TQHMWPF--------------------------------------PSDKVMQGYAYILTHPGNPCIFYDH---------- 349 (428)
T ss_pred ccccCCC--------------------------------------ccchHHHHHHHHHcCCCcceEeeCC----------
Confidence 6332110 0123578899999999999999994
Q ss_pred CCCCCCCCCCccCCCccccccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEEcCCCCeEE
Q 003977 641 NSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIY 720 (782)
Q Consensus 641 n~y~~~~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~l 720 (782)
.++| .+.+.+++||++||+++++..|++... ..++.++++.| ++.++
T Consensus 350 ----------~~~~--------~~~~~i~~Li~~Rk~~~~~~~g~~~~~-----------~a~~d~yv~~~----~~~~~ 396 (428)
T PLN00196 350 ----------FFDW--------GLKEEIAALVSIRNRNGITPTSELRIM-----------EADADLYLAEI----DGKVI 396 (428)
T ss_pred ----------CcCc--------cHHHHHHHHHHHHHhCCCcCCccEEEE-----------EecCCEEEEEE----CCEEE
Confidence 1244 244689999999999999999987643 24567999999 46899
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCeEEEecCC
Q 003977 721 LAFNAHDFFVKVSLPPPPPKRQWFRVVDTN 750 (782)
Q Consensus 721 Vv~N~~~~~~~~~Lp~~~~~~~w~~l~~t~ 750 (782)
|.+|..-..-. -+|. .|+.++.+.
T Consensus 397 ~~i~~~~~~~~-~~~~-----~~~~~~~g~ 420 (428)
T PLN00196 397 VKIGSRYDVSH-LIPE-----GFQVVAHGN 420 (428)
T ss_pred EEECCCCCccc-cCcc-----cceEEEecC
Confidence 99998522111 1232 388777654
No 28
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=6.2e-45 Score=393.67 Aligned_cols=278 Identities=30% Similarity=0.465 Sum_probs=193.5
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
|||+||++||||||+||||+|||+||++. + ..+|||+|.||++|+|+|||. +|||+||
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~----------~----~~~~gY~~~d~~~vd~~~Gt~--------~d~~~Lv 58 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFES----------P----NGYHGYDPSDYYAVDPRFGTM--------EDFKELV 58 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EES----------S----SSTTTTSESEEEEESTTTBHH--------HHHHHHH
T ss_pred CCHHHHHHhhHHHHHcCCCceeccccccc----------c----cccccccceeeeccccccchh--------hhhhhhh
Confidence 89999999999999999999999999996 2 268999999999999999998 9999999
Q ss_pred HHHhhCCcEEEEeeecccccCCCCCCCcccccc---CCCCCcceeeCC-----CCCc------cC-----------cCCC
Q 003977 359 KALHGAGIEVILDVVYNHTNEADDANPYTTSFR---GIDNKVYYMVDG-----TGQL------LN-----------YAGC 413 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~---~~~~~~yy~~d~-----~g~~------~~-----------~~~~ 413 (782)
++||++||+||||+|+||++. .++|+.... +...+.||.+.+ ++.. .+ +...
T Consensus 59 ~~~h~~gi~VilD~V~NH~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (316)
T PF00128_consen 59 DAAHKRGIKVILDVVPNHTSD---DHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSD 135 (316)
T ss_dssp HHHHHTTCEEEEEEETSEEET---TSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTT
T ss_pred hccccccceEEEeeecccccc---ccccccccccccccccccceeecccccccccccccccccccccccccccccccccc
Confidence 999999999999999999997 666643211 111345555421 1111 11 2233
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHhc--cccCCceEEecccCCCCc
Q 003977 414 GNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD--AILSRCKIIAEPWDCRGL 491 (782)
Q Consensus 414 ~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~~--~~~~~~~ligE~w~~~~~ 491 (782)
.++||++||+||++|++++++|+ ++||||||||+++++..+ +++++... ...|+++++||.|.....
T Consensus 136 ~~dln~~n~~v~~~i~~~~~~w~-~~giDGfR~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~E~~~~~~~ 204 (316)
T PF00128_consen 136 LPDLNYENPEVREYIIDVLKFWI-EEGIDGFRLDAAKHIPKE----------FWKEFRDEVKEEKPDFFLIGEVWGGDNE 204 (316)
T ss_dssp SEEBETTSHHHHHHHHHHHHHHH-HTTESEEEETTGGGSSHH----------HHHHHHHHHHHHHTTSEEEEEESSSSHH
T ss_pred cchhhhhhhhhhhhhcccccchh-hceEeEEEEccccccchh----------hHHHHhhhhhhhccccceeeeeccCCcc
Confidence 57999999999999999999999 577999999999999654 55555542 233899999999976521
Q ss_pred ----cc-cCCCCCcccchhhchhHHHHHHH---HHhCCCCchhhHHHHhhcCccccccCCCCCcceEEEeeccCCCCchh
Q 003977 492 ----YL-VGKFPNWDRWAEWNGKYRDDLRK---FIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYD 563 (782)
Q Consensus 492 ----~~-~g~~~~~~~~~~~n~~f~~~i~~---~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d 563 (782)
+. .+... .. ..++......... ...........+...+...... ...+...++|++|||+.|+..
T Consensus 205 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~f~~nHD~~r~~~ 277 (316)
T PF00128_consen 205 DLRQYAYDGYFD-LD--SVFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSS----YPDPYRAVNFLENHDTPRFAS 277 (316)
T ss_dssp HHHHHHHHGTTS-HS--EEEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHH----STTGGGEEEESSHTTSSTHHH
T ss_pred ccchhhhccccc-cc--hhhcccccccccchhhhhccccchhhhhhhhhhhhhhh----hcccceeeecccccccccchh
Confidence 00 01110 00 0111222122222 2233333333333333221111 122568899999999988654
Q ss_pred hhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccC
Q 003977 564 LVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRY 637 (782)
Q Consensus 564 ~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~ 637 (782)
.+.. ...+++++++++||+||+||||||||+|+++.
T Consensus 278 ~~~~--------------------------------------~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~ 313 (316)
T PF00128_consen 278 RFGN--------------------------------------NRDRLKLALAFLLTSPGIPMIYYGDEIGMTGS 313 (316)
T ss_dssp HTTT--------------------------------------HHHHHHHHHHHHHHSSSEEEEETTGGGTBBTS
T ss_pred hhcc--------------------------------------cchHHHHHHHHHHcCCCccEEEeChhccCCCC
Confidence 4321 11267889999999999999999999999874
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=1.6e-42 Score=380.53 Aligned_cols=344 Identities=17% Similarity=0.259 Sum_probs=223.2
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
.-|++|+++||||++||||+|||+|++++ ..+|||+|.|||.++++|||. +||++||
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~---------------~~~~GY~~~d~y~~~~~~Gt~--------~el~~li 82 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQS---------------LAPEGYLPQNLYSLNSAYGSE--------HLLKSLL 82 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcC---------------CCCCCCCcccccccCcccCCH--------HHHHHHH
Confidence 36899999999999999999999999987 246899999999999999998 9999999
Q ss_pred HHHhhCCcEEEEeeecccccCCC-CCCCccccccCCCCCcceee----CCCCC--cc--CcCCCCCCCCCCCHHHHHHHH
Q 003977 359 KALHGAGIEVILDVVYNHTNEAD-DANPYTTSFRGIDNKVYYMV----DGTGQ--LL--NYAGCGNTLNCNHPVVMELIL 429 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV~NH~~~~~-~~~~~~~~~~~~~~~~yy~~----d~~g~--~~--~~~~~~~~ln~~~p~v~~~i~ 429 (782)
++||++||+||+|+|+||++... ....++..|.+.. ..|... +..+. .. ......+|||++||+||++|+
T Consensus 83 ~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~-~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~ 161 (401)
T PLN02361 83 RKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIP-LPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDII 161 (401)
T ss_pred HHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCCc-CCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHH
Confidence 99999999999999999985321 1112222333310 011100 00110 00 111236999999999999999
Q ss_pred HHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHhccccCCceEEecccCCCCccccCCCCCcccchhhchh
Q 003977 430 DSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGK 509 (782)
Q Consensus 430 d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~~~~~~~~~ligE~w~~~~~~~~g~~~~~~~~~~~n~~ 509 (782)
+++++|++++||||||+|++++++.+ +++++.+. ..| ++++||.|+.... . +. ++. ..-+...
T Consensus 162 ~~~~wl~~~~GiDGfRlDavk~~~~~----------f~~~~~~~-~~p-~f~VGE~w~~~~~-~-~~--d~~-~~y~~~~ 224 (401)
T PLN02361 162 GWLIWLRNDVGFQDFRFDFAKGYSAK----------FVKEYIEA-AKP-LFSVGEYWDSCNY-S-GP--DYR-LDYNQDS 224 (401)
T ss_pred HHHHHHHhcCCCCEEEEeccccCCHH----------HHHHHHHh-hCC-eEEEEEEecCCCc-C-Cc--ccc-cchhhhh
Confidence 99987776799999999999999644 67777653 334 7899999976211 0 00 000 0001122
Q ss_pred HHHHHHHHHhCCCCchh--------hHHHHhhcC-cccc-------ccCCCCCcceEEEeeccCCCCchhhhhhcccccc
Q 003977 510 YRDDLRKFIKGDPGMKG--------ILATRISGS-SDLY-------RVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNE 573 (782)
Q Consensus 510 f~~~i~~~~~g~~~~~~--------~~~~~l~~~-~~~~-------~~~~~~p~~~vnfi~~HD~~tl~d~~~~~~~~~~ 573 (782)
.++.+.+|+....+..+ .+...+.+. ..+. ......|..+|+||+|||+.+...+.
T Consensus 225 ~~~~l~~~~~~~~~~~~~fDF~l~~~l~~a~~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~-------- 296 (401)
T PLN02361 225 HRQRIVNWIDGTGGLSAAFDFTTKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHW-------- 296 (401)
T ss_pred HHHHHHHHHHhcCCcceeecHHHHHHHHHHHhhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhcc--------
Confidence 34455555553321111 111111100 0000 01123567899999999997642211
Q ss_pred ccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCCCCCCCCCCCCCccC
Q 003977 574 ANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQ 653 (782)
Q Consensus 574 ~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~n~y~~~~~~~~~~ 653 (782)
+ ....+.+++.+++||.||+||||||+= ++
T Consensus 297 ----------------~--------------~~~~~~~~AyA~iLT~pG~P~Vyyg~~--------------------~~ 326 (401)
T PLN02361 297 ----------------P--------------FPSDHIMEGYAYILTHPGIPTVFYDHF--------------------YD 326 (401)
T ss_pred ----------------C--------------CchHHHHHHHHHHHCCCCcCeEeeccc--------------------cC
Confidence 0 012345678999999999999999871 24
Q ss_pred CCccccccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEEcCCCCeEEEEEeCCCCcEEEE
Q 003977 654 WGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVS 733 (782)
Q Consensus 654 W~~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lVv~N~~~~~~~~~ 733 (782)
|+. ++.+++++||+|||++++++.+++... ..++.+++-.. +++++|=++... -
T Consensus 327 ~~~------~~~~~I~~Li~lRk~~~~~~~s~~~i~-----------~a~~~~y~a~i----~~~~~~k~g~~~-----~ 380 (401)
T PLN02361 327 WGG------SIHDQIVKLIDIRKRQDIHSRSSIRIL-----------EAQSNLYSAII----DEKLCMKIGDGS-----W 380 (401)
T ss_pred CCh------HHHHHHHHHHHHHHhCCCCCCCcEEEE-----------EecCCeEEEEE----CCeEEEEecCCC-----C
Confidence 542 688999999999999999999887543 33455666555 335555544431 1
Q ss_pred cCCCCCCCCeEEEecCC
Q 003977 734 LPPPPPKRQWFRVVDTN 750 (782)
Q Consensus 734 Lp~~~~~~~w~~l~~t~ 750 (782)
+|. +..|..++.+.
T Consensus 381 ~p~---~~~~~~~~~g~ 394 (401)
T PLN02361 381 CPS---GREWTLATSGH 394 (401)
T ss_pred CCC---CCCceEEEecC
Confidence 232 34588776553
No 30
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=2.3e-42 Score=382.71 Aligned_cols=399 Identities=13% Similarity=0.170 Sum_probs=264.6
Q ss_pred EecccccCCCCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCC
Q 003977 260 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 339 (782)
Q Consensus 260 i~v~~Ft~~~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~ 339 (782)
+.+.+|.++..+++ |++.+++++ ||++ ||++|||+|+|++ | .++||++.||+.|||+
T Consensus 3 v~lity~Ds~g~gl-----gdl~g~l~~--yL~~-~v~~i~LlPffps----------~-----sD~GYdv~DY~~VDP~ 59 (470)
T TIGR03852 3 AMLITYADSLGKNL-----KELNKVLEN--YFKD-AVGGVHLLPFFPS----------T-----GDRGFAPMDYTEVDPA 59 (470)
T ss_pred ceEEEecCCCCCCh-----hhHHHHHHH--HHHH-hCCEEEECCCCcC----------C-----CCCCcCchhhceeCcc
Confidence 45677888777776 999999998 9999 7999999999987 3 3679999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCC--CC--Cccee-----eCCC----CC
Q 003977 340 YAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGI--DN--KVYYM-----VDGT----GQ 406 (782)
Q Consensus 340 yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~--~~--~~yy~-----~d~~----g~ 406 (782)
|||. +||++|+++ |+||+|+|+||||. +|+||+.+... ++ ..||. |.+. ..
T Consensus 60 ~Gt~--------~Df~~L~~~-----~kvmlDlV~NHtS~---~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d 123 (470)
T TIGR03852 60 FGDW--------SDVEALSEK-----YYLMFDFMINHISR---QSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQED 123 (470)
T ss_pred cCCH--------HHHHHHHHh-----hhHHhhhccccccc---chHHHHHHHhcCCCCCccceEEecccccCCCCccccc
Confidence 9998 999999998 89999999999996 89999876422 22 45666 2110 00
Q ss_pred --------------------------ccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCC
Q 003977 407 --------------------------LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 460 (782)
Q Consensus 407 --------------------------~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~ 460 (782)
...|+..++|||+.||+|+++|.++++||+ +.||||||+|++.++++.. |+.
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~-Gt~ 201 (470)
T TIGR03852 124 VDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKL-GTN 201 (470)
T ss_pred cccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccC-CCC
Confidence 011334589999999999999999999999 7899999999999999875 544
Q ss_pred C-----CChHHHHHHHhccccCCceEEecccCCCC-ccccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhc
Q 003977 461 L-----NAPPLIRAIAKDAILSRCKIIAEPWDCRG-LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISG 534 (782)
Q Consensus 461 ~-----~~~~~l~~i~~~~~~~~~~ligE~w~~~~-~~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~ 534 (782)
+ +..++++.+.+-...+++.||+|.+..-. .+..|. -+.|++.|.-...-+..-..+....+..-+..
T Consensus 202 c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~~~~~~~~~~gd------e~~mvY~F~lppl~l~al~~~~~~~l~~wl~~ 275 (470)
T TIGR03852 202 DFFVEPEIWELLDEVRDILAPTGAEILPEIHEHYTIQFKIAE------HGYYVYDFALPMLVLYSLYSGKTNRLADWLRK 275 (470)
T ss_pred cccCChhHHHHHHHHHHHhccCCCEEEeHhhhhccccccccc------ceeEEccCccchhhHHHhhccCHHHHHHHHHh
Confidence 4 23356666665456689999999975321 111121 14555555444333322222223333333331
Q ss_pred CccccccCCCCCcceEEEeeccCCCCchhh---hhhccccc-----cccCCCCC----CCCCCCC---CcCCCCCCCCCh
Q 003977 535 SSDLYRVNKRKPYHSINFIIAHDGFTLYDL---VSYNYKHN-----EANGEGGN----DGCNDNF---SWNCGFEGETDD 599 (782)
Q Consensus 535 ~~~~~~~~~~~p~~~vnfi~~HD~~tl~d~---~~~~~~~~-----~~~g~~~~----~g~~~n~---sw~~g~~g~~~~ 599 (782)
.|...+||+.|||+.+|.|+ +....... ..+|..-+ .....+. --|| +.-
T Consensus 276 ----------~p~~~~nfL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~-----t~~ 340 (470)
T TIGR03852 276 ----------SPMKQFTTLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINC-----TYY 340 (470)
T ss_pred ----------CcccceEEeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeeh-----hhH
Confidence 12234799999999998553 21111100 01121111 0000011 1111 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCCC-CCCCCCCCCCccCCCccc---cccchHHHHHHHHHHHH
Q 003977 600 ASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN-NSYGHDTAINNFQWGQLE---TKKNSHYRFFSEVIKFR 675 (782)
Q Consensus 600 ~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~-n~y~~~~~~~~~~W~~~~---~~~~~l~~~~~~Li~lR 675 (782)
.++... .+++.++.+++|++||||.||||+|+|+...-.. ...+....+|+-.|+..+ +-....+.-+.+||++|
T Consensus 341 ~aL~~~-~~r~~~a~ai~~~lpGiP~iYy~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R 419 (470)
T TIGR03852 341 SALGDD-DQAYLLARAIQFFAPGIPQVYYVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFR 419 (470)
T ss_pred HHhCCC-HHHHHHHHHHHHcCCCCceEEechhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111111 3667889999999999999999999998642110 001123346666776543 11234666677799999
Q ss_pred hcCCCCCC-CCccccCcceeeccccCCCCCcEEEEEEEcCC-CCeEEEEEeCCCCcEEE
Q 003977 676 QSRRVFGR-EDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN-GADIYLAFNAHDFFVKV 732 (782)
Q Consensus 676 k~~paL~~-g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~-~~~~lVv~N~~~~~~~~ 732 (782)
+++|+|+. |++. . ...++.++++.|...+ ++.+++++|+++..+.+
T Consensus 420 ~~~~aF~~~g~~~-~----------~~~~~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~ 467 (470)
T TIGR03852 420 NTSKAFDLDGSID-I----------ETPSENQIEIVRTNKDGGNKAILTANLKTKTFTI 467 (470)
T ss_pred hhCcccCCCCceE-e----------cCCCCcEEEEEEEcCCCCceEEEEEecCCCcEec
Confidence 99999988 6654 2 1457889999997654 57999999999887543
No 31
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-40 Score=380.00 Aligned_cols=404 Identities=23% Similarity=0.330 Sum_probs=256.3
Q ss_pred eEEEEEecccccCCCCCCCCCCCC-CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCC
Q 003977 255 LVIYEMNVRAFTGDESSGLDPEIR-GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINF 333 (782)
Q Consensus 255 ~vIYei~v~~Ft~~~~~g~~~~~~-G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy 333 (782)
+|||++.+++|.+++.++.....+ |||+||+++||||++|||++|||+||++. + ..++||++.||
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s----------~----~~~~gY~~~Dy 66 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFES----------P----QADHGYDVSDY 66 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCC----------C----ccCCCccccch
Confidence 489999999999987722222222 99999999999999999999999999987 2 36789999999
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCC----CcceeeCCC-----
Q 003977 334 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDN----KVYYMVDGT----- 404 (782)
Q Consensus 334 ~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~----~~yy~~d~~----- 404 (782)
+.+++.|||. ++|++||+++|++||+||||+|+||++. +|+|+........ ..||.|.+.
T Consensus 67 ~~id~~~Gt~--------~d~~~li~~~H~~gi~vi~D~V~NH~s~---~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~ 135 (505)
T COG0366 67 TKVDPHFGTE--------EDFKELVEEAHKRGIKVILDLVFNHTSD---EHPWFKEARSSKPNPKRSDYYIWRDPDPDGT 135 (505)
T ss_pred hhcCcccCCH--------HHHHHHHHHHHHCCCEEEEEeccCcCCC---ccHHHHHHhcCCCCcccCCCceEccCcccCC
Confidence 9999999998 9999999999999999999999999997 7888865443332 266666310
Q ss_pred ----------CC---------c--cCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCC----C
Q 003977 405 ----------GQ---------L--LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDG----S 459 (782)
Q Consensus 405 ----------g~---------~--~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g----~ 459 (782)
+. + ..+...+++||+.||+|++.+.+.++||++ +||||||+|+++++.....- .
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~~~~~~~~ 214 (505)
T COG0366 136 PPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDFGLPPSEE 214 (505)
T ss_pred CCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhccccCCCCccc
Confidence 00 0 112223688999999999999999999995 99999999999999875320 0
Q ss_pred CCCChHHHHHHHhccccCCceEEecccCCCCccccCCCCCcccchhhchhHHHHHH-HHHhCC----------CCchhhH
Q 003977 460 PLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLR-KFIKGD----------PGMKGIL 528 (782)
Q Consensus 460 ~~~~~~~l~~i~~~~~~~~~~ligE~w~~~~~~~~g~~~~~~~~~~~n~~f~~~i~-~~~~g~----------~~~~~~~ 528 (782)
.....+.+.+.... ..+.++..++.+..........-.. ...+..+..... ..+... ......+
T Consensus 215 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (505)
T COG0366 215 NLTFLEEIHEYLRE-ENPDVLIYGEAITDVGEAPGAVKED----FADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEEL 289 (505)
T ss_pred ccccHHHHHHHHHH-HHHHHHhcCcceeeeeccccccchh----hhhccchhhhhHhhccccccccccccccCcccHHHH
Confidence 11122223222211 1112222223222111000000000 000001111111 111111 0111111
Q ss_pred HHHhhcCccccccCCCCCcceEEEeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHH
Q 003977 529 ATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSR 608 (782)
Q Consensus 529 ~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~ 608 (782)
...+........ ........|..|||..++....... . . .+..
T Consensus 290 ~~~~~~~~~~~~---~~~~~~~~~~~~hD~~r~~~~~~~~----------------------------~-~-----~~~~ 332 (505)
T COG0366 290 KEILADWPLAVN---LNDGWNNLFLSNHDQPRLLSRFGDD----------------------------V-G-----GRDA 332 (505)
T ss_pred HHHHHHHHhhhc---cccCchhhhhhhcCccceeeeccCC----------------------------c-c-----chHH
Confidence 111111100000 0112333478899987764433100 0 0 0235
Q ss_pred HHHHHHHHHHHcCCeeeEeccccccCccCCCCC-------------CCCCCCCCCccCCC--------------------
Q 003977 609 QMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNN-------------SYGHDTAINNFQWG-------------------- 655 (782)
Q Consensus 609 ~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~n-------------~y~~~~~~~~~~W~-------------------- 655 (782)
.++++.+++++.||+|+||||+|+|++.....+ ....+.++.+|+|+
T Consensus 333 ~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~ 412 (505)
T COG0366 333 SAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPN 412 (505)
T ss_pred HHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChh
Confidence 577788899999999999999999998765432 12345788999998
Q ss_pred -------ccc---cccchHHHHHHHHHHHHhcCC-CCCCCCccccCcceeeccccCCCCCcEEEEEEEcCCCCeEEEEEe
Q 003977 656 -------QLE---TKKNSHYRFFSEVIKFRQSRR-VFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFN 724 (782)
Q Consensus 656 -------~~~---~~~~~l~~~~~~Li~lRk~~p-aL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lVv~N 724 (782)
... ....+++.++++|+++|+.+. .+..+..... . ......+++|.|... ++.++|++|
T Consensus 413 ~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~----~-----~~~~~~~~~~~~~~~-~~~~~~~~n 482 (505)
T COG0366 413 DLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVL----L-----ADDDPSLLAFLRESG-GETLLVVNN 482 (505)
T ss_pred hhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCccccee----c-----CCCCceEEEEecccC-CceEEEEEc
Confidence 111 113478999999999999994 4454522211 0 134457999999877 678999999
Q ss_pred CCCCcEEEEcCC
Q 003977 725 AHDFFVKVSLPP 736 (782)
Q Consensus 725 ~~~~~~~~~Lp~ 736 (782)
++.....+.+|.
T Consensus 483 ~~~~~~~~~~p~ 494 (505)
T COG0366 483 LSEEEQEVELPG 494 (505)
T ss_pred CCCccccccCCc
Confidence 998766666664
No 32
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=2.5e-39 Score=360.75 Aligned_cols=389 Identities=15% Similarity=0.211 Sum_probs=250.8
Q ss_pred CCHHHHHhhch-HHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 003977 279 GSYLGLIQKIP-HLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEM 357 (782)
Q Consensus 279 G~~~gl~~~Ld-yLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~L 357 (782)
|+++||+++|| ||++| |++|||||+|+. .| ....||++.||+.|||+|||. +||++|
T Consensus 17 GdL~gl~~kLd~yL~~l-v~~vhllPff~p---------sp----~sD~GYdv~DY~~VDP~fGt~--------eDf~~L 74 (495)
T PRK13840 17 GGLKSLTALLDGRLDGL-FGGVHILPFFYP---------ID----GADAGFDPIDHTKVDPRLGDW--------DDVKAL 74 (495)
T ss_pred CCHhHHHHHHHHHHHHH-hCeEEECCCccC---------CC----CCCCCCCCcChhhcCcccCCH--------HHHHHH
Confidence 89999999999 59999 999999999953 02 245799999999999999998 999999
Q ss_pred HHHHhhCCcEEEEeeecccccCCCCCCCcccccc--CCCC--CcceeeCCC-------------------CC-c------
Q 003977 358 VKALHGAGIEVILDVVYNHTNEADDANPYTTSFR--GIDN--KVYYMVDGT-------------------GQ-L------ 407 (782)
Q Consensus 358 V~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~--~~~~--~~yy~~d~~-------------------g~-~------ 407 (782)
++ ||+||+|+|+|||+. +|+||+.+. +.++ ..||.+.++ +. +
T Consensus 75 ~~-----giklmlDlV~NHtS~---~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~ 146 (495)
T PRK13840 75 GK-----THDIMADLIVNHMSA---ESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLA 146 (495)
T ss_pred Hh-----CCeEEEEECCCcCCC---CcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEec
Confidence 95 999999999999996 899998763 2222 456665210 10 0
Q ss_pred --------cCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCC----ChHHHHHHHhccc
Q 003977 408 --------LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLN----APPLIRAIAKDAI 475 (782)
Q Consensus 408 --------~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~----~~~~l~~i~~~~~ 475 (782)
..|+..++|||++||+|+++|++++++|+ +.||||||+|++..+.++. |+.+. ...++++++.-..
T Consensus 147 ~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~-gt~c~~~pe~~~~l~~lr~~~~ 224 (495)
T PRK13840 147 DGKTRLVWTTFTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKA-GTSCFMIPETFEFIDRLAKEAR 224 (495)
T ss_pred CCCceEEeccCCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCC-CCCcCCChHHHHHHHHHHHHhh
Confidence 11334579999999999999999999999 7899999999999888764 44443 2345555554221
Q ss_pred cCCceEEecccCCCCcc-ccCCCCCcccchhhchhHHHHHHHHH-hCCCCchhhHHHHhhcCccccccCCCCCcceEEEe
Q 003977 476 LSRCKIIAEPWDCRGLY-LVGKFPNWDRWAEWNGKYRDDLRKFI-KGDPGMKGILATRISGSSDLYRVNKRKPYHSINFI 553 (782)
Q Consensus 476 ~~~~~ligE~w~~~~~~-~~g~~~~~~~~~~~n~~f~~~i~~~~-~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi 553 (782)
..+..+|+|.|...+.. ..+. .....+|+.+...+...+ .++.... ...+.. .|...+||+
T Consensus 225 ~~~~~ll~Ei~~y~~~~~~~~~----e~~~vYnF~Lp~ll~~aL~~~~~~~L---~~~l~~----------~p~~~~n~L 287 (495)
T PRK13840 225 ARGMEVLVEIHSYYKTQIEIAK----KVDRVYDFALPPLILHTLFTGDVEAL---AHWLEI----------RPRNAVTVL 287 (495)
T ss_pred hcCCEEEEeCccccCccccccc----cccEEecchhhHHHHHHHHhCCchHH---HHHHHh----------CCCccEEee
Confidence 23667899987643211 1111 112556666665555433 3442222 222221 134558999
Q ss_pred eccCCCCchhh----------hhhccccc-----cccC--CCCC-CCCC----CCCCcCCCCCCCCChHHHHHHHHHHHH
Q 003977 554 IAHDGFTLYDL----------VSYNYKHN-----EANG--EGGN-DGCN----DNFSWNCGFEGETDDASIKALRSRQMK 611 (782)
Q Consensus 554 ~~HD~~tl~d~----------~~~~~~~~-----~~~g--~~~~-~g~~----~n~sw~~g~~g~~~~~~~~~~~~~~~r 611 (782)
.|||+.++-|+ +....... ...| ...+ .|.. .-|--||+.+.. +.. ...++.
T Consensus 288 ~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~A-----l~~-~d~r~l 361 (495)
T PRK13840 288 DTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDA-----LGR-NDQDYL 361 (495)
T ss_pred ecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHH-----hcC-CcHHHH
Confidence 99999998332 21111110 0011 1000 1111 112223433210 000 013567
Q ss_pred HHHHHHHHcCCeeeEeccccccCccCCC---CCCCCCCCCCCccCCCcccc-ccchHHHHHHHHHHHHhcCCCCCCCCcc
Q 003977 612 NFHLALMVSQGTPMMLMGDEYGHTRYGN---NNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFL 687 (782)
Q Consensus 612 ~a~~~ll~~pGiP~iy~GdE~g~~~~g~---~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~~~Li~lRk~~paL~~g~~~ 687 (782)
++.+++|++||||.||||+|+|..+.-. ...-++.-.|..++|++.+. -...+++-+++||++|+++|+|+ |++.
T Consensus 362 la~ai~~~~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF~-~~~~ 440 (495)
T PRK13840 362 AARAIQFFAPGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAFD-GAFS 440 (495)
T ss_pred HHHHHHHcCCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-ceEE
Confidence 8889999999999999999999864210 01113344556677765543 23468999999999999999995 6553
Q ss_pred ccCcceeeccccCCCCCcEEEEEEEcCCCCeEEEEEeCCCCcEEEEcC
Q 003977 688 NINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLP 735 (782)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lVv~N~~~~~~~~~Lp 735 (782)
.. ..++..++..|..+ .....+.+|+......+...
T Consensus 441 ~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 476 (495)
T PRK13840 441 YA-----------ADGDTSLTLSWTAG-DSSASLTLDFAPKKGLITAL 476 (495)
T ss_pred Ee-----------cCCCCeEEEEEecC-CceEEEEEEcccceEEEEec
Confidence 21 23556677777665 56777788887665444433
No 33
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=372.09 Aligned_cols=449 Identities=21% Similarity=0.287 Sum_probs=280.0
Q ss_pred CCCCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCC
Q 003977 249 NIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGY 328 (782)
Q Consensus 249 ~~~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY 328 (782)
..+|+..++|||.+++|..++.+++ |+++||.+||||||+||+|+|||+||+++ + ..++||
T Consensus 12 ~~~W~~~~~YQI~~~sF~~s~~d~~-----G~~~GI~~kldyi~~lG~taiWisP~~~s----------~----~~~~GY 72 (545)
T KOG0471|consen 12 PDWWKTESIYQIYPDSFADSDGDGV-----GDLKGITSKLDYIKELGFTAIWLSPFTKS----------S----KPDFGY 72 (545)
T ss_pred chhhhcCceeEEeccccccccCCCc-----cccccchhhhhHHHhcCCceEEeCCCcCC----------C----HHHhcc
Confidence 4478999999999999999988887 99999999999999999999999999998 2 247899
Q ss_pred CCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCC--CcceeeCCCCC
Q 003977 329 STINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDN--KVYYMVDGTGQ 406 (782)
Q Consensus 329 ~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~--~~yy~~d~~g~ 406 (782)
++.||+.++|+|||. ++|++||+++|++||++|+|+|+||++. +++||..-...+. ..||.+++...
T Consensus 73 ~~~d~~~l~p~fGt~--------edf~~Li~~~h~~gi~ii~D~viNh~~~---~~~wf~~~~~~~~~y~d~~~~~~~~~ 141 (545)
T KOG0471|consen 73 DASDLEQLRPRFGTE--------EDFKELILAMHKLGIKIIADLVINHRSD---EVEWFKASPTSKTGYEDWYPWHDGSS 141 (545)
T ss_pred CccchhhhcccccHH--------HHHHHHHHHHhhcceEEEEeeccccCCc---cccccccCccccccceeeeeccCccc
Confidence 999999999999998 9999999999999999999999999995 7788753222222 23555543221
Q ss_pred c--------cC-----------------------cCCCCCCCCCCCHHHHHHHHHHHH-HHHHhcCccEEEEcccccccc
Q 003977 407 L--------LN-----------------------YAGCGNTLNCNHPVVMELILDSLR-HWVVEYHVDGFRFDLASVLCR 454 (782)
Q Consensus 407 ~--------~~-----------------------~~~~~~~ln~~~p~v~~~i~d~l~-~W~~e~gVDGFR~D~a~~l~~ 454 (782)
. .+ +..-+++||+++|+|++.|.++++ +|+ ++||||||+|+++++..
T Consensus 142 ~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~ 220 (545)
T KOG0471|consen 142 LDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAG 220 (545)
T ss_pred ccccCCCCccchHhhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccc
Confidence 1 11 111268999999999999999999 888 89999999999999976
Q ss_pred CCCCCCCCChHHHHHHHhccccCCceEEecccCCCCccccCCCCCcccchhhchhHHHHHHHHHhCCC-----CchhhHH
Q 003977 455 GTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDP-----GMKGILA 529 (782)
Q Consensus 455 ~~~g~~~~~~~~l~~i~~~~~~~~~~ligE~w~~~~~~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~-----~~~~~~~ 529 (782)
+. ...... ...+.-+||.|+....+... .........-+..+....+..+.... +......
T Consensus 221 ~~----------~~~~~~---~~p~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 286 (545)
T KOG0471|consen 221 EN----------FKNMWP---DEPVFDVGEKLQDDNYVAYQ-YNDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQ 286 (545)
T ss_pred cc----------cccccc---CCCcccceeEecCcchhhcc-cccccccchhhhhHHHHHHhhhhhhhhcccccchhhhh
Confidence 53 111111 11345567766654321110 00000001111112222222221110 0000000
Q ss_pred HHhhcCccccccCCCCCcceEEEeeccCCCCchh------hhh-------hccccccccCCCCCCCCCCCCCcCCCCCCC
Q 003977 530 TRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYD------LVS-------YNYKHNEANGEGGNDGCNDNFSWNCGFEGE 596 (782)
Q Consensus 530 ~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d------~~~-------~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~ 596 (782)
..... ......+|.+||+..+..+ .+. ......+.....+.+..+.-..|. .+.
T Consensus 287 ~~~~~----------~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~a~W~---~~~ 353 (545)
T KOG0471|consen 287 TEAYS----------SLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASIYKEVEVDWLSNHDTENRWAHWV---LGN 353 (545)
T ss_pred hhhhc----------cHHHHHhhhccCCCCccccccchhhhhhhhhccchHHHHHHHHHHHhcCCccCCceeee---ecC
Confidence 00000 0112344444444222100 000 000000000001111111112232 222
Q ss_pred CC-hHHHHHHHHHHHHHHHHHHHHcCCeeeEeccccccCccCCCCCCCCCC----CCCCccCCCccc-------------
Q 003977 597 TD-DASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHD----TAINNFQWGQLE------------- 658 (782)
Q Consensus 597 ~~-~~~~~~~~~~~~r~a~~~ll~~pGiP~iy~GdE~g~~~~g~~n~y~~~----~~~~~~~W~~~~------------- 658 (782)
.. .+...++.....++..++++++||+|++|+|+|+|+....-......+ ..+++|+|+...
T Consensus 354 ~~~~r~~sr~~~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~~~gfs~~~~~~~~ 433 (545)
T KOG0471|consen 354 HDQARLASRFGSDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRTPMQWDESTNAGFSEASKTWLP 433 (545)
T ss_pred ccchhhHHHhcchhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHhccCCccccccccccCCCCccCccee
Confidence 22 233344555557788899999999999999999999876111111111 127888887752
Q ss_pred --------------cccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEEcCCCCeEEEEEe
Q 003977 659 --------------TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFN 724 (782)
Q Consensus 659 --------------~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lVv~N 724 (782)
....+++..++++..+|+++..+..|..... .....+++|.|.......+++++|
T Consensus 434 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~-----------~~~~~if~~~r~~~~~~~~~~~~~ 502 (545)
T KOG0471|consen 434 VNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLF-----------AATPGLFSFSRNWDGNERFIAVLN 502 (545)
T ss_pred ccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeee-----------cCCCceEEEEeccCCCceEEEEEe
Confidence 2346889999999999999876666654322 456789999998875678888888
Q ss_pred CCCCcEEEEcCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCceEEEcCcEEEEEE
Q 003977 725 AHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 780 (782)
Q Consensus 725 ~~~~~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~~vl~ 780 (782)
+++.+....+-... +...+.++. .......+.|.|++++||+
T Consensus 503 ~~~~~~~~~~~~~~----~~~~~~~~~----------~~~~~~~~~l~p~e~~vl~ 544 (545)
T KOG0471|consen 503 FGDSPLSLNLTDLD----SVSLLSSNY----------SDVDLSRLKLEPHEGLVLR 544 (545)
T ss_pred cCCccccccccccc----ceeeeeccc----------cccccceeeecCCceEEEe
Confidence 88776655554432 222222211 1234567999999999996
No 34
>PLN02784 alpha-amylase
Probab=100.00 E-value=1.1e-37 Score=358.03 Aligned_cols=303 Identities=22% Similarity=0.304 Sum_probs=206.7
Q ss_pred CCCCeEEEEEeccccc-CCCCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCC
Q 003977 251 PEKDLVIYEMNVRAFT-GDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYS 329 (782)
Q Consensus 251 ~~~~~vIYei~v~~Ft-~~~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~ 329 (782)
+-.....|++.+..|. ++..++ .-|++|+++||||++||||+|||+|++++ ..+|||+
T Consensus 495 ~~~~~~~~eVmlQgF~Wds~~dg------~w~~~I~ekldyL~~LG~taIWLpP~~~s---------------~s~~GY~ 553 (894)
T PLN02784 495 CSGTGSGFEILCQGFNWESHKSG------RWYMELGEKAAELSSLGFTVVWLPPPTES---------------VSPEGYM 553 (894)
T ss_pred cccccCCceEEEEeEEcCcCCCC------chHHHHHHHHHHHHHhCCCEEEeCCCCCC---------------CCCCCcC
Confidence 3446778999999997 333221 34899999999999999999999999987 2468999
Q ss_pred CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCC--CCCCccccccCCCCCcceeeCC----
Q 003977 330 TINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD--DANPYTTSFRGIDNKVYYMVDG---- 403 (782)
Q Consensus 330 ~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~--~~~~~~~~~~~~~~~~yy~~d~---- 403 (782)
|.|||.++++|||. +||++||++||++||+||+|+|+||++... ..+.| ..|.+ ++.|++
T Consensus 554 p~D~y~lds~yGT~--------~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~-~~f~g-----~~dW~d~~i~ 619 (894)
T PLN02784 554 PKDLYNLNSRYGTI--------DELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVW-NIFGG-----RLNWDDRAVV 619 (894)
T ss_pred cccccccCcCcCCH--------HHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcc-cccCC-----eecCCCCccc
Confidence 99999999999998 999999999999999999999999997521 11111 11211 111110
Q ss_pred --C------CCc--cCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHhc
Q 003977 404 --T------GQL--LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD 473 (782)
Q Consensus 404 --~------g~~--~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~~ 473 (782)
+ |.. .......++||++||+||+.|.+++++|++++||||||||++++++. .++++..+.
T Consensus 620 ~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~----------~Fvkeyv~a 689 (894)
T PLN02784 620 ADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWG----------GYVKDYMEA 689 (894)
T ss_pred CCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCH----------HHHHHHHhc
Confidence 0 000 00112358999999999999999999999899999999999988743 366666653
Q ss_pred cccCCceEEecccCCCCccccCCCCCcccchhhchh---HHHHHHHHHhCCCCchhhHHH--------HhhcCccccc--
Q 003977 474 AILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGK---YRDDLRKFIKGDPGMKGILAT--------RISGSSDLYR-- 540 (782)
Q Consensus 474 ~~~~~~~ligE~w~~~~~~~~g~~~~~~~~~~~n~~---f~~~i~~~~~g~~~~~~~~~~--------~l~~~~~~~~-- 540 (782)
..| .++|||.|+... |.. +.+++. -++.+.+|+....+....|.. .+.+ .+.+.
T Consensus 690 -~kp-~F~VGEyWd~~~-~~~---------g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~-~e~wrL~ 756 (894)
T PLN02784 690 -SEP-YFAVGEYWDSLS-YTY---------GEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALER-CEYWRLS 756 (894)
T ss_pred -cCC-cEEEEEeccccc-ccc---------CccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhc-cchhhhh
Confidence 233 799999998632 111 122222 266777887654433222221 1111 01111
Q ss_pred --------cCCCCCcceEEEeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHH
Q 003977 541 --------VNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKN 612 (782)
Q Consensus 541 --------~~~~~p~~~vnfi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~ 612 (782)
.....|..+|+||+|||+.+... +|... ..+..+
T Consensus 757 d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~------------------------~w~~p--------------~~k~~~ 798 (894)
T PLN02784 757 DQKGKPPGVVGWWPSRAVTFIENHDTGSTQG------------------------HWRFP--------------EGKEMQ 798 (894)
T ss_pred hccCCCCCeeccccCceEEEecCCCCCCCcc------------------------cCCCC--------------ccchhh
Confidence 11235778999999999853200 12100 112345
Q ss_pred HHHHHHHcCCeeeEeccccccCccCCCCCCCCCCCCCCccCCCccccccchHHHHHHHHHHHHhcC
Q 003977 613 FHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSR 678 (782)
Q Consensus 613 a~~~ll~~pGiP~iy~GdE~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~ 678 (782)
++|++||.||+||||||+=++. +..-+++||.+||+.
T Consensus 799 AYAyILthpG~PcVFy~h~y~~-----------------------------~~~~I~~Li~iRk~~ 835 (894)
T PLN02784 799 GYAYILTHPGTPAVFYDHIFSH-----------------------------YHPEIASLISLRNRQ 835 (894)
T ss_pred HHHHHHcCCCcceEEehhhhhh-----------------------------hHHHHHHHHHHHHHc
Confidence 7899999999999999884421 123499999999986
No 35
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=1e-34 Score=323.65 Aligned_cols=483 Identities=17% Similarity=0.164 Sum_probs=290.5
Q ss_pred CCCCCCCCCCCC---CCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHH-h--hchHHHHcCCcEEEECCccccchhhh
Q 003977 239 FDWGDNYKLPNI---PEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLI-Q--KIPHLLELGINAVELLPVFEFDEMEF 312 (782)
Q Consensus 239 ~~w~~~~~~p~~---~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~-~--~LdyLk~LGvt~I~L~Pi~e~~~~~~ 312 (782)
-.|...+..|.. --.-.+.+.+++.++...++ ..+.+.. + ..+||++|||++|||+|++++....-
T Consensus 33 ~~W~~~~~~~~p~~~~~~a~~W~~~~P~s~i~~~~--------~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g 104 (688)
T TIGR02455 33 RLWQQPYAEAQPRDASAIASVWFTAYPAAIIAPEG--------CSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRG 104 (688)
T ss_pred hhhcCCCCCCChHHHHhhcCeeEEecchhhcCCCC--------CcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccc
Confidence 456654433332 13567888999999875432 3444433 3 37999999999999999999832211
Q ss_pred -hhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCcccccc
Q 003977 313 -QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFR 391 (782)
Q Consensus 313 -~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~ 391 (782)
... | ....|||+.| |.|+|.|||. +||++||++||++||+||+|+|+|||+. .|++...-.
T Consensus 105 ~~~t--P----~~D~gyDi~d-~~Idp~~GT~--------eDf~~L~~~Ah~~G~~vi~DlVpnHTs~---ghdF~lAr~ 166 (688)
T TIGR02455 105 REFT--P----SIDGNFDRIS-FDIDPLLGSE--------EELIQLSRMAAAHNAITIDDIIPAHTGK---GADFRLAEL 166 (688)
T ss_pred cCCC--C----CCCCCCCccc-CccCcccCCH--------HHHHHHHHHHHHCCCEEEEEeCCCCCCC---CcchHHHhh
Confidence 111 1 2356999999 5999999998 9999999999999999999999999996 666332222
Q ss_pred C-CCCCcce-----------eeC--CCC----------------------C------------ccCcC------------
Q 003977 392 G-IDNKVYY-----------MVD--GTG----------------------Q------------LLNYA------------ 411 (782)
Q Consensus 392 ~-~~~~~yy-----------~~d--~~g----------------------~------------~~~~~------------ 411 (782)
+ .+-+.|| .|. +.+ . .++|+
T Consensus 167 ~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~ 246 (688)
T TIGR02455 167 AHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKT 246 (688)
T ss_pred cCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccc
Confidence 2 1125567 331 111 0 01221
Q ss_pred ----------CCCCCCCCCCHH--HHHHHH-HHHHHHHHhcCccEEEEccccccccCCC--C-CCCCChHHHHHHHh--c
Q 003977 412 ----------GCGNTLNCNHPV--VMELIL-DSLRHWVVEYHVDGFRFDLASVLCRGTD--G-SPLNAPPLIRAIAK--D 473 (782)
Q Consensus 412 ----------~~~~~ln~~~p~--v~~~i~-d~l~~W~~e~gVDGFR~D~a~~l~~~~~--g-~~~~~~~~l~~i~~--~ 473 (782)
..+|+||+.||. ||+.|+ +++++|+ +.|+||||+|+++++..+.. + .+.+..++++++++ +
T Consensus 247 Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e~h~ll~~~r~~l~ 325 (688)
T TIGR02455 247 RRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSEGHPLSLTGNQLIA 325 (688)
T ss_pred hhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCccCHHHHHHHHHHH
Confidence 126999999999 999999 9999999 89999999999999976532 1 23345567666554 1
Q ss_pred --cccCCceEEecccCCC---CccccCCCCCcccchhhchhHHHHHH-HHHhCCCCchhhHHHHhhcCccccccCCCCCc
Q 003977 474 --AILSRCKIIAEPWDCR---GLYLVGKFPNWDRWAEWNGKYRDDLR-KFIKGDPGMKGILATRISGSSDLYRVNKRKPY 547 (782)
Q Consensus 474 --~~~~~~~ligE~w~~~---~~~~~g~~~~~~~~~~~n~~f~~~i~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~ 547 (782)
...++..+++|.-..- ..|+.++ .+ ..+++..+..+. ....|+... +...|..... ....+.
T Consensus 326 ~~~r~~Gg~ll~E~nl~~~d~~~~~g~~-~d----l~~dF~t~p~~~~AL~tgda~p---Lr~~L~~~~~----~gid~~ 393 (688)
T TIGR02455 326 GAIRKAGGFSFQELNLTIDDIAAMSHGG-AD----LSYDFITRPAYHHALLTGDTEF---LRLMLKEMHA----FGIDPA 393 (688)
T ss_pred HhhhcCCeeEeeeccCCHHHHHHHhCCC-cc----eeecccccHHHHHHHHcCCHHH---HHHHHHhhhc----CCCCch
Confidence 3457778888842211 0111111 11 122222222222 222333221 1112221111 112456
Q ss_pred ceEEEeeccCCCCchhhhhhcccccc----ccCCCC----------------CCCCCC--CC-Cc--------------C
Q 003977 548 HSINFIIAHDGFTLYDLVSYNYKHNE----ANGEGG----------------NDGCND--NF-SW--------------N 590 (782)
Q Consensus 548 ~~vnfi~~HD~~tl~d~~~~~~~~~~----~~g~~~----------------~~g~~~--n~-sw--------------~ 590 (782)
+.++|+.|||+.|+. ++.....|-. -.|+.- -.+... |. -| +
T Consensus 394 ~~~~~LrNHDELtle-lvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~ 472 (688)
T TIGR02455 394 SLIHALQNHDELTLE-LVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAA 472 (688)
T ss_pred hhhhhccCccccchh-hhhhcccccccccccccccCCccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhh
Confidence 789999999998884 3311111100 000000 001110 10 11 1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHH----cCCeeeEecc--------------ccccCccCC--CCCCCCCCC---
Q 003977 591 CGFEGETDDASIKALRSRQMKNFHLALMV----SQGTPMMLMG--------------DEYGHTRYG--NNNSYGHDT--- 647 (782)
Q Consensus 591 ~g~~g~~~~~~~~~~~~~~~r~a~~~ll~----~pGiP~iy~G--------------dE~g~~~~g--~~n~y~~~~--- 647 (782)
.|+ .+-..+..-..+++++++++|++ +||+|+|||| +|+|+...- .+..|..-+
T Consensus 473 ~GI---RrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~p 549 (688)
T TIGR02455 473 LGI---RDLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTRWIHRGGYDLADLAP 549 (688)
T ss_pred cCC---ccchhhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCccccccCCCcccCCCCc
Confidence 121 11111112235678889999998 9999999999 999986421 111111100
Q ss_pred ---------CCCccCCCccc---cccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEEcCC
Q 003977 648 ---------AINNFQWGQLE---TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN 715 (782)
Q Consensus 648 ---------~~~~~~W~~~~---~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~ 715 (782)
++.+.-+...+ ..+.++.+.+++|++.||.++++..+.+... ...+..|+++.+...+
T Consensus 550 ~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~----------~~~~~gvLa~v~~l~~ 619 (688)
T TIGR02455 550 EAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIP----------DVQAPGLLVMVHELPA 619 (688)
T ss_pred hhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeec----------CCCCCcEEEEEEEcCC
Confidence 11111222222 2456999999999999999999998877544 2567899999997552
Q ss_pred -CCeEEEEEeCCCCcEE--EEcCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCceEEEcCcEEEEEEe
Q 003977 716 -GADIYLAFNAHDFFVK--VSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEA 781 (782)
Q Consensus 716 -~~~~lVv~N~~~~~~~--~~Lp~~~~~~~w~~l~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~~vl~~ 781 (782)
+..++++.||+.+++. +.++... ++.+.++++....... .....-.|+|+||...+|..
T Consensus 620 ~~~~~L~v~Nfs~~~~~~~l~l~~~~-~~~~~dl~~~~~~~~~------~~~~~~~i~L~~y~~~wl~~ 681 (688)
T TIGR02455 620 GKGIQITALNFGADAIAEEICLPGFA-PGPVVDIIHESVEGDL------TDDCELMINLDPYEALALRI 681 (688)
T ss_pred CCceEEEeeccCCCCeeeEEeccccC-CCCceeccCCCccCCc------CCCceeEEEecCcceEEEEe
Confidence 3789999999986655 4456544 4577888876532211 01233579999999998864
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=2.4e-31 Score=309.47 Aligned_cols=177 Identities=21% Similarity=0.306 Sum_probs=132.8
Q ss_pred CCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 003977 278 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEM 357 (782)
Q Consensus 278 ~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~L 357 (782)
.+||.+++++||||++||||+|||+||+++. + ..+|||++.||+.|++.|||. ++|++|
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~---------~----gs~hGYdv~D~~~idp~lGt~--------edf~~L 70 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAV---------P----GSTHGYDVVDHSEINPELGGE--------EGLRRL 70 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCC---------C----CCCCCCCCCCCCCcCCCCCCH--------HHHHHH
Confidence 4999999999999999999999999999861 1 257999999999999999998 999999
Q ss_pred HHHHhhCCcEEEEeeecccccCCCCCCCccccc--cCCCC--CcceeeC--C----------------------------
Q 003977 358 VKALHGAGIEVILDVVYNHTNEADDANPYTTSF--RGIDN--KVYYMVD--G---------------------------- 403 (782)
Q Consensus 358 V~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~--~~~~~--~~yy~~d--~---------------------------- 403 (782)
|++||++||+||||+|+||++..+..++|+... .|... ..||..+ +
T Consensus 71 v~aah~~Gm~vIlDiVpNH~a~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~ 150 (825)
T TIGR02401 71 SEAARARGLGLIVDIVPNHMAVHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLR 150 (825)
T ss_pred HHHHHHCCCEEEEEecccccccccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeee
Confidence 999999999999999999999754446666421 11111 1222111 0
Q ss_pred -------------------CC-------------Cc-----------------------cCc---CCC--CCCCCCCCHH
Q 003977 404 -------------------TG-------------QL-----------------------LNY---AGC--GNTLNCNHPV 423 (782)
Q Consensus 404 -------------------~g-------------~~-----------------------~~~---~~~--~~~ln~~~p~ 423 (782)
.+ .. .|| ... -+.|+.++|+
T Consensus 151 ~d~~~~~~l~y~~~~~Pi~p~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~ 230 (825)
T TIGR02401 151 FDGDGTLALRYYDHRLPLAPGTLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPA 230 (825)
T ss_pred ecCCCceeEEecCccCCcCccchhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHH
Confidence 00 00 000 000 2567889999
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHhccccCCceEEec
Q 003977 424 VMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAE 484 (782)
Q Consensus 424 v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~~~~~~~~~ligE 484 (782)
|.+.....+..|+++.-|||+|+|.+.++... ..+++.+.+. ..++.+++.|
T Consensus 231 Vf~~~h~~i~~lv~~g~vdGlRIDh~dGL~dP--------~~Yl~rLr~~-~~~~~yivvE 282 (825)
T TIGR02401 231 VFDATHRLVLELVAEGLVDGLRIDHIDGLADP--------EGYLRRLREL-VGPARYLVVE 282 (825)
T ss_pred HHHHHHHHHHHHHHcCCCceEEeccccccCCh--------HHHHHHHHHh-cCCCceEEEE
Confidence 99999999999998877999999999988432 2367777543 3445778777
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.95 E-value=1.2e-26 Score=271.42 Aligned_cols=88 Identities=23% Similarity=0.406 Sum_probs=79.6
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
++|.+++++|+||++||||+|||+||++.. + ..+|||++.||+.|++.||+. ++|++||
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~---------~----gs~hGYdv~D~~~idp~lGt~--------e~f~~Lv 75 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILAAR---------P----GSTHGYDVVDHTRINPELGGE--------EGLRRLA 75 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCccCC---------C----CCCCCCCcCCCCCcCCCCCCH--------HHHHHHH
Confidence 899999999999999999999999999871 1 257999999999999999998 9999999
Q ss_pred HHHhhCCcEEEEeeecccccCCCCCCCcc
Q 003977 359 KALHGAGIEVILDVVYNHTNEADDANPYT 387 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~ 387 (782)
++||++||+||||+|+||++..+.+++|+
T Consensus 76 ~aah~~Gi~VIlDiV~NH~~~~~~~n~ww 104 (879)
T PRK14511 76 AALRAHGMGLILDIVPNHMAVGGPDNPWW 104 (879)
T ss_pred HHHHHCCCEEEEEeccccccCcCccCHHH
Confidence 99999999999999999999754345554
No 38
>smart00642 Aamy Alpha-amylase domain.
Probab=99.89 E-value=2.3e-23 Score=203.72 Aligned_cols=97 Identities=35% Similarity=0.566 Sum_probs=88.0
Q ss_pred EEecccccCCCCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCC
Q 003977 259 EMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338 (782)
Q Consensus 259 ei~v~~Ft~~~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~ 338 (782)
||.+++|.+++.++. |||++++++|+||++||||+|||+|++++... ...+|||++.||+++++
T Consensus 1 qi~~~~F~~~~~~~~-----G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~-----------~~~~~gY~~~d~~~i~~ 64 (166)
T smart00642 1 QIYPDRFADGNGDGG-----GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQG-----------YPSYHGYDISDYKQIDP 64 (166)
T ss_pred CeeeccccCCCCCCC-----cCHHHHHHHHHHHHHCCCCEEEECcceeCCCC-----------CCCCCCcCccccCCCCc
Confidence 578999999887775 99999999999999999999999999998211 12689999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccC
Q 003977 339 RYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 379 (782)
Q Consensus 339 ~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~ 379 (782)
+|||. +||++||++||++||+||||+|+||++.
T Consensus 65 ~~Gt~--------~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 65 RFGTM--------EDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred ccCCH--------HHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 99998 9999999999999999999999999983
No 39
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.85 E-value=1.6e-18 Score=190.42 Aligned_cols=288 Identities=21% Similarity=0.338 Sum_probs=174.6
Q ss_pred CCCCccEEeCCc-EEEEEEcCCCC-------eEEEEEEeCCCccccCCCCCceeeeCCC---CCCCCCCEEEEEEeCCC-
Q 003977 109 AFPIGVSEVENG-INFAIFSQHAT-------AVTLCLSLPKREKLDWQDGGMIELPLDP---RVNKTGDIWHICIEDLP- 176 (782)
Q Consensus 109 ~~~lGa~~~~~g-~~F~vwaP~a~-------~v~L~l~~~~~~~~~~~~~~~~~~~l~~---~~~~~G~vW~~~v~~~~- 176 (782)
+.-||||+..+| |.|..|.|.-. .|.|.++.+-+ ..|... +.+.+.+++ ...+.|.+-+..|.|+.
T Consensus 25 a~rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~-~ID~~~-~~q~v~f~R~~~~L~~qgey~WgVv~Glra 102 (811)
T PF14872_consen 25 ATRLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLE-PIDPRA-PEQTVRFRRDRLPLERQGEYHWGVVAGLRA 102 (811)
T ss_pred HHHhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCC-CCCCcC-CCceeEEEEEEEeeccccceeeehhhccCC
Confidence 346999998877 89999999866 89999998743 112211 111222111 01346654445565643
Q ss_pred ----CCCceEEEEEecCCCCCCCccccCceeeeCccccccccccccCccc----c---ccccccccccCCCCCCCCCCCC
Q 003977 177 ----RSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLVEGRRHFGDAS----A---KLSKFLGTYEFESLPFDWGDNY 245 (782)
Q Consensus 177 ----~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~w~~~~ 245 (782)
-.|.+|..+-.... .+-.++.||.|.++-- ..|+... . ......+.+...... + +..
T Consensus 103 Gtr~q~GsfYwLry~d~~--------~~~~~I~DpLaySlPy-GvfaPAElYDl~~lq~~RaD~~Yf~~~~a~-~--~~~ 170 (811)
T PF14872_consen 103 GTRDQAGSFYWLRYRDQD--------GEVQIIRDPLAYSLPY-GVFAPAELYDLERLQRRRADLDYFEATGAA-D--PSD 170 (811)
T ss_pred CCcccccceEEEEEccCC--------CCeEEecccccccCcc-cccChHHhhchHhHhhhhhhHHHHHhhccc-c--CCC
Confidence 24788887754322 1235889999988721 1121100 0 000000000000000 0 011
Q ss_pred CCCCCCCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHhhchHHHH---------------cCCcEEEECCccccchh
Q 003977 246 KLPNIPEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLE---------------LGINAVELLPVFEFDEM 310 (782)
Q Consensus 246 ~~p~~~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~LdyLk~---------------LGvt~I~L~Pi~e~~~~ 310 (782)
.++.. .-...|-||||.+-+.. |++.||++....|.+ .|+++|+||||=..-+-
T Consensus 171 ~~~rv-~~P~nILQiHv~TAsp~----------GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtiey 239 (811)
T PF14872_consen 171 GIPRV-PAPRNILQIHVGTASPE----------GTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEY 239 (811)
T ss_pred CCccc-CCCceeEEEecCCCCCC----------cchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCccee
Confidence 12332 24689999999987653 999999986555543 79999999998543210
Q ss_pred hh-----------------------------------hhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCC----chH
Q 003977 311 EF-----------------------------------QRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPL----KAS 351 (782)
Q Consensus 311 ~~-----------------------------------~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~----~~~ 351 (782)
.. .++|+ ..|||||+.= +|+...+|. .|.
T Consensus 240 r~e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~~~v~v~L~kPd-----tqNWGYDv~I-------~GsaAtNPalL~TlRP 307 (811)
T PF14872_consen 240 RAENEPGHEFFSIRPEDEDELDPETEGVHEDGDVTVTLRKPD-----TQNWGYDVVI-------LGSAATNPALLETLRP 307 (811)
T ss_pred ccccCCCCceeeecccccccccccccccccCceEEEEecCCC-----ccccCcceee-------eccCCCCHHHHhcCCc
Confidence 00 01222 5799999753 343333333 467
Q ss_pred HHHHHHHHHHhh---CCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHH
Q 003977 352 WEFKEMVKALHG---AGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI 428 (782)
Q Consensus 352 ~elk~LV~~~H~---~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i 428 (782)
+||-.||.+||. ..|.||+|+||.|....+ -..+ +..|+ ..+ | -.|-+||+.+|.||..+
T Consensus 308 DElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~--~~LL-------n~~fl-kGP-----n--MYGQdlnhq~P~VRAIL 370 (811)
T PF14872_consen 308 DELVDFIATLHNFPTGPIQVIYDLVYGHADNQA--LDLL-------NRRFL-KGP-----N--MYGQDLNHQNPVVRAIL 370 (811)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEeeecccccchh--hHhh-------hhhhc-cCC-----c--cccccccccChHHHHHH
Confidence 999999999998 779999999999976421 1111 11111 111 1 11678999999999999
Q ss_pred HHHHHHHHHhcCccEEEEccccc
Q 003977 429 LDSLRHWVVEYHVDGFRFDLASV 451 (782)
Q Consensus 429 ~d~l~~W~~e~gVDGFR~D~a~~ 451 (782)
++.-+.=+ ++|+||+|+|-+.-
T Consensus 371 LEmQRRK~-n~GaDGIRVDGgQD 392 (811)
T PF14872_consen 371 LEMQRRKI-NTGADGIRVDGGQD 392 (811)
T ss_pred HHHHHhhc-ccCCceeEeccccc
Confidence 99999988 89999999996543
No 40
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=2.5e-19 Score=183.53 Aligned_cols=384 Identities=21% Similarity=0.307 Sum_probs=229.8
Q ss_pred CHHHHHhhc-hHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcC--CCCCCCCCCCCCCCCCCCCCCCchHHHHHH
Q 003977 280 SYLGLIQKI-PHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTW--GYSTINFFSPMSRYAAGGGGPLKASWEFKE 356 (782)
Q Consensus 280 ~~~gl~~~L-dyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~w--GY~~~dy~a~d~~yGt~~~~p~~~~~elk~ 356 (782)
++..|+..- ..|.--|+-.|++.|+.|..-.. +| ...| .|+|+.| .++.+-|.+ +||+.
T Consensus 38 KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~-----~~----~rPWWeRYQPvSY-KL~tRSGNE--------~eF~d 99 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGGVQVSPPNENVAIH-----NP----FRPWWERYQPVSY-KLCTRSGNE--------DEFRD 99 (504)
T ss_pred ehHHHHHHHHhhcCcCCcceeeecCcchhhhhc-----CC----CCCceeecccceE-EeeccCCCH--------HHHHH
Confidence 566666654 45677899999999999973211 11 1223 7999995 888999998 99999
Q ss_pred HHHHHhhCCcEEEEeeecccccCCC-----------CCCCccccccCCCCCcceeeC--C------CCCccCcCC-----
Q 003977 357 MVKALHGAGIEVILDVVYNHTNEAD-----------DANPYTTSFRGIDNKVYYMVD--G------TGQLLNYAG----- 412 (782)
Q Consensus 357 LV~~~H~~Gi~VIlDvV~NH~~~~~-----------~~~~~~~~~~~~~~~~yy~~d--~------~g~~~~~~~----- 412 (782)
||+.|.+-|+|+++|+|+||++... ...|-..+|+|. .|-.+| + .....++..
T Consensus 100 MV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGV---PYs~~DFn~~kc~~~~~~i~~~Nda~~V~ 176 (504)
T KOG2212|consen 100 MVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGV---PYSGWDFNDGKCKTGSGDIENYNDATQVR 176 (504)
T ss_pred HHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCC---CcccccCCCcccCCCccccccccchhhhh
Confidence 9999999999999999999998421 112222244443 122222 1 111222211
Q ss_pred -C----CCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHhc--cccCCceEEecc
Q 003977 413 -C----GNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD--AILSRCKIIAEP 485 (782)
Q Consensus 413 -~----~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~~--~~~~~~~ligE~ 485 (782)
| ..|||..+.-||..|++.|.+.+ +.||-|||.|++++++... ......-++.++.| +...+-+++-|.
T Consensus 177 ~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~D---i~~I~~~l~nLnsD~f~s~srpfi~qEV 252 (504)
T KOG2212|consen 177 DCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGD---IKAILDKLHNLNSDWFPSGSKPFIYQEV 252 (504)
T ss_pred cceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHH---HHHHHHHHhhcccccccCCCCceehhhh
Confidence 2 25899999999999999999999 8999999999999996542 00000112222223 223456778887
Q ss_pred cCCCCc-cccCCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCccccccCCCCCcceEEEeeccCCCCchhh
Q 003977 486 WDCRGL-YLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDL 564 (782)
Q Consensus 486 w~~~~~-~~~g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d~ 564 (782)
.+.|+- ...+++....... ++.|.+.|-..+++...+ +. |..-..-|. +....++++||+|||+.|=..
T Consensus 253 ID~GgE~v~~~dY~g~G~~T--eF~f~~~ig~~~r~~~~~-ky----L~nwG~~wG--f~~s~~~L~FvDNHDNQR~~g- 322 (504)
T KOG2212|consen 253 IDLGGEPIKSSDYFGNGRVT--EFKFGAKLGTVIRKWNKM-KY----LKNWGEGWG--FMPSDRALVFVDNHDNQRGHG- 322 (504)
T ss_pred hhcCCceeecccccCCceee--eeechHHHHHHHhcchhH-HH----HHhcCCccC--cCCCcceEEEeccCcccccCC-
Confidence 777632 1112222111122 344667777777765432 11 111111111 122348999999999964211
Q ss_pred hhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcC-CeeeEeccccccCccCCCCC--
Q 003977 565 VSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQ-GTPMMLMGDEYGHTRYGNNN-- 641 (782)
Q Consensus 565 ~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~~~~~~~~~r~a~~~ll~~p-GiP~iy~GdE~g~~~~g~~n-- 641 (782)
.++ ..-+.+ ...++.++|.++|+..| |+|-+..---|-.+..+..+
T Consensus 323 ------------agg----a~VltY---------------K~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~ 371 (504)
T KOG2212|consen 323 ------------AGG----ASVLTY---------------KDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNN 371 (504)
T ss_pred ------------CCc----ceEEEe---------------cchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCC
Confidence 000 000110 12467899999999999 99988765444433332211
Q ss_pred C-------CCCCCCCCccCCCccccccchHHHHHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEEcC
Q 003977 642 S-------YGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDN 714 (782)
Q Consensus 642 ~-------y~~~~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~ 714 (782)
. ++.|..-+ =-|=. ..-+.-++.|.+||..- +...+. .|.+..++.|+|.|
T Consensus 372 ~~~i~SP~Fn~D~tC~-~GWvC-----EHRWrqI~~Mv~FrnAV---~~t~~~----------~w~d~g~nqIaF~R--- 429 (504)
T KOG2212|consen 372 NGVIKSPTFNPDTTCG-NGWVC-----EHRWRQIRNMVNFRNAV---DGTPFT----------NWYDNGSNQIAFGR--- 429 (504)
T ss_pred CcceecceeCCCCccc-Cceee-----echHHHHHHHHhhhhhc---CCcccc----------ceeeCCCcEEEEec---
Confidence 1 11111000 02222 12356689999999753 222221 12355688999999
Q ss_pred CCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEecCCCC
Q 003977 715 NGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLE 752 (782)
Q Consensus 715 ~~~~~lVv~N~~~~~~~~~Lp~~~~~~~w~~l~~t~~~ 752 (782)
+.+-++++|..+...+..|.+..+.++++++++++..
T Consensus 430 -g~kGF~A~Nn~~~d~s~~l~T~LPAGtYCDviSG~~~ 466 (504)
T KOG2212|consen 430 -GNRGFIAFNNDDWDFSLTLQTGLPAGTYCDVISGDKI 466 (504)
T ss_pred -CCccEEEEeCcchhHHHHHhcCCCCCceeeeeccccc
Confidence 5667899999877766666655556899999987654
No 41
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.75 E-value=7.2e-18 Score=156.30 Aligned_cols=102 Identities=52% Similarity=0.900 Sum_probs=84.6
Q ss_pred ccEEeCCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEecCCCC
Q 003977 113 GVSEVENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDGPRDW 192 (782)
Q Consensus 113 Ga~~~~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~~~~~~ 192 (782)
||++.++|++|+||||+|++|+|+||.+.. ...+..+++|++..+++|++|+++|+++ ..|.+|+|+|+++..+
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~lf~~~~-----~~~~~~~~~m~~~~~~~~gvW~~~v~~~-~~g~~Y~y~v~g~~~p 74 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLLFDPGD-----GDEPALEIELDPSVNRTGDVWHVFVEGL-KPGQLYGYRVDGPFEP 74 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEEEeCCC-----CCCceEEEeCcCcccccCCEEEEEECCC-CCCCEEEEEECCCCCC
Confidence 899999999999999999999999986421 1223456788654445677999999985 5799999999987777
Q ss_pred CCCccccCceeeeCccccccccccccCc
Q 003977 193 HQGHRFDSSIVLIDPYAKLVEGRRHFGD 220 (782)
Q Consensus 193 ~~~~~~~~~~~~~DPyA~~~~~~~~~~~ 220 (782)
..|++++++.+++||||++|.++..|+.
T Consensus 75 ~~g~~~~~~~~~~DPYA~a~~~~~~~~~ 102 (119)
T cd02852 75 EQGHRFDPSKVLLDPYAKAVSGDEYFGR 102 (119)
T ss_pred CcccccCCCcEEECCCcCeEcCccccCc
Confidence 8899999999999999999998877753
No 42
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.72 E-value=4.2e-17 Score=147.06 Aligned_cols=97 Identities=35% Similarity=0.702 Sum_probs=80.0
Q ss_pred CCccEEeCCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEecCC
Q 003977 111 PIGVSEVENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDGPR 190 (782)
Q Consensus 111 ~lGa~~~~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~~~~ 190 (782)
||||++.++|++|+||||+|++|+|++|.+.. . ..+++|.+ ..|++|++.|+++ ..|.+|+|+|+++.
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~------~--~~~~~m~~---~~~GvW~~~v~~~-~~g~~Y~y~i~g~~ 68 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCLFDEDG------S--ETRLPLTE---EYGGVWHGFLPGI-KAGQRYGFRVHGPY 68 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEEEeCCC------C--EEEEEccc---ccCCEEEEEECCC-CCCCEEEEEECCcc
Confidence 69999999999999999999999999986421 1 34678843 3455999999985 48999999999966
Q ss_pred CCCCCccccCceeeeCccccccccccccC
Q 003977 191 DWHQGHRFDSSIVLIDPYAKLVEGRRHFG 219 (782)
Q Consensus 191 ~~~~~~~~~~~~~~~DPyA~~~~~~~~~~ 219 (782)
.+..++++++..+++||||++++++..|+
T Consensus 69 ~p~~~~~~~~~~~~~DPYA~~~~~~~~~~ 97 (103)
T cd02856 69 DPERGLRFNPAKLLLDPYARALDGPLAYH 97 (103)
T ss_pred CcccCcccCCCeEEecCCcceEcCCccCC
Confidence 67778888888999999999998766553
No 43
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.65 E-value=2.3e-16 Score=195.88 Aligned_cols=100 Identities=23% Similarity=0.365 Sum_probs=86.6
Q ss_pred CeEEEEEecccccCCCCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCC
Q 003977 254 DLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINF 333 (782)
Q Consensus 254 ~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy 333 (782)
...+|-++... .++|.+++++||||++||||+|||+||++.. + ..+|||++.||
T Consensus 743 P~atyrlq~~~-------------~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~---------~----gs~hGYdv~D~ 796 (1693)
T PRK14507 743 PRATYRLQFHK-------------DFTFADAEAILPYLAALGISHVYASPILKAR---------P----GSTHGYDIVDH 796 (1693)
T ss_pred cceeEEEEeCC-------------CCCHHHHHHHhHHHHHcCCCEEEECCCcCCC---------C----CCCCCCCCCCC
Confidence 35577776643 2999999999999999999999999999861 1 25789999999
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCcc
Q 003977 334 FSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYT 387 (782)
Q Consensus 334 ~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~ 387 (782)
+.|+|.||+. ++|++||++||++||+||||+|+||++..+.+++|+
T Consensus 797 ~~idp~lG~~--------edf~~Lv~~ah~~Gi~vilDiV~NH~~~~~~~n~w~ 842 (1693)
T PRK14507 797 SQINPEIGGE--------EGFERFCAALKAHGLGQLLDIVPNHMGVGGADNPWW 842 (1693)
T ss_pred CccCcccCCH--------HHHHHHHHHHHHCCCEEEEEecccccCCCccCCHHH
Confidence 9999999998 999999999999999999999999999654456555
No 44
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.59 E-value=4.9e-15 Score=132.87 Aligned_cols=90 Identities=19% Similarity=0.322 Sum_probs=70.1
Q ss_pred CccEEeCCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEecCCC
Q 003977 112 IGVSEVENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDGPRD 191 (782)
Q Consensus 112 lGa~~~~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~~~~~ 191 (782)
|||++.++|++|+||||+|++|+|+||.+.. ...+..+++|++ +.+++|+++|++. .+|.+|+|+|++..
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l~~~~~-----~~~~~~~~~m~~---~~~gvw~~~v~~~-~~g~~Y~y~i~~~~- 70 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLLYDKDD-----QDKVLETVQMKR---GENGVWSVTLDGD-LEGYYYLYEVKVYK- 70 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEEEcCCC-----CCCcceeEeeec---CCCCEEEEEeCCc-cCCcEEEEEEEEec-
Confidence 7999999999999999999999999986421 012234678853 4555999999984 68999999998752
Q ss_pred CCCCccccCceeeeCcccccccccccc
Q 003977 192 WHQGHRFDSSIVLIDPYAKLVEGRRHF 218 (782)
Q Consensus 192 ~~~~~~~~~~~~~~DPyA~~~~~~~~~ 218 (782)
....+++||||+++.++...
T Consensus 71 -------~~~~~~~DPyA~~~~~~~~~ 90 (100)
T cd02860 71 -------GETNEVVDPYAKALSANGER 90 (100)
T ss_pred -------eEEEEEcCcccEeEeeCCCc
Confidence 23457899999999876544
No 45
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1e-13 Score=155.74 Aligned_cols=88 Identities=25% Similarity=0.380 Sum_probs=80.3
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
=+|....+.||||++|||.|+|+.|||.. .| .+.||||++|+..|+|.+|+. +.|.+||
T Consensus 16 FtF~~A~~~l~yl~~LGIShLY~SPIftA-------~p------GStHGYDVvD~t~InPeLGG~--------egl~rLv 74 (889)
T COG3280 16 FTFADARALLDYLADLGISHLYLSPIFTA-------RP------GSTHGYDVVDPTEINPELGGE--------EGLERLV 74 (889)
T ss_pred CCHHHHHHhhHHHHhcCchheeccchhhc-------CC------CCCCCccCCCccccChhhcCh--------HHHHHHH
Confidence 48999999999999999999999999987 22 268999999999999999998 9999999
Q ss_pred HHHhhCCcEEEEeeecccccCCCCCCCcc
Q 003977 359 KALHGAGIEVILDVVYNHTNEADDANPYT 387 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~ 387 (782)
.++|++||++|+|+|+||++..+..+||+
T Consensus 75 aalk~~GlGlI~DIVPNHMav~g~~N~ww 103 (889)
T COG3280 75 AALKSRGLGLIVDIVPNHMAVGGHENPWW 103 (889)
T ss_pred HHHHhcCCceEEEecccchhcccccChHH
Confidence 99999999999999999999876566665
No 46
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.47 E-value=1.2e-13 Score=120.10 Aligned_cols=81 Identities=31% Similarity=0.689 Sum_probs=59.8
Q ss_pred CCccEEeCC--cEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeC-CCCCC-ceEEEEE
Q 003977 111 PIGVSEVEN--GINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIED-LPRSE-VLYGYRV 186 (782)
Q Consensus 111 ~lGa~~~~~--g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~-~~~~g-~~Y~y~i 186 (782)
||||++.++ +++|+||||+|++|+|+++++. .+...+++|.+ ....| +|+++|++ ++ +| .+|+|+|
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~-------~~~~~~~~m~~-~~~~G-~w~~~~~~~~~-~g~~~Y~y~i 70 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNG-------SWPAEEYPMTR-KDDDG-VWEVTVPGDLP-PGGYYYKYRI 70 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTT-------SSEEEEEEEEE-ECTTT-EEEEEEEGCGT-TTT-EEEEEE
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeee-------cCCCceEEeee-cCCCC-EEEEEEcCCcC-CCCEEEEEEE
Confidence 799999875 9999999999999999999873 23456788852 13455 99999994 43 34 7999999
Q ss_pred ecCCCCCCCccccCceeeeCccc
Q 003977 187 DGPRDWHQGHRFDSSIVLIDPYA 209 (782)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~DPyA 209 (782)
++.. | ....++||||
T Consensus 71 ~~~~----g----~~~~~~DPYA 85 (85)
T PF02922_consen 71 DGDD----G----ETPEVVDPYA 85 (85)
T ss_dssp EETT----T----EEEEET-TT-
T ss_pred EeCC----C----cEEEEeCCCC
Confidence 9864 1 3457899997
No 47
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.38 E-value=5.6e-13 Score=161.13 Aligned_cols=89 Identities=20% Similarity=0.333 Sum_probs=77.0
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
|+|.++.++|+||++||+|.|||+||++.+ ..++.|++.||+.+||.||... ...++|++||
T Consensus 129 G~~~~w~~~L~~ik~lGyN~IhftPI~~~G--------------~SnS~Ysi~Dyl~idP~~~~~~----~~~~d~~~lV 190 (1464)
T TIGR01531 129 GPLSEWEPRLRVAKEKGYNMIHFTPLQELG--------------GSNSCYSLYDQLQLNQHFKSQK----DGKNDVQALV 190 (1464)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccCC--------------CCCCCccccchhhcChhhcccC----CcHHHHHHHH
Confidence 999999999999999999999999999762 2456899999999999996310 0128999999
Q ss_pred HHHhhC-CcEEEEeeecccccCCCCCCCccc
Q 003977 359 KALHGA-GIEVILDVVYNHTNEADDANPYTT 388 (782)
Q Consensus 359 ~~~H~~-Gi~VIlDvV~NH~~~~~~~~~~~~ 388 (782)
+++|++ ||+||+|+|+|||+. +++|+.
T Consensus 191 ~~~h~~~Gm~~ilDvV~NHTa~---ds~Wl~ 218 (1464)
T TIGR01531 191 EKLHRDWNVLSITDIVFNHTAN---NSPWLL 218 (1464)
T ss_pred HHHHHhcCCEEEEEeeeccccc---CCHHHH
Confidence 999997 999999999999997 677764
No 48
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.28 E-value=1e-11 Score=107.87 Aligned_cols=71 Identities=24% Similarity=0.431 Sum_probs=56.4
Q ss_pred ccEEeC-CcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEecCCC
Q 003977 113 GVSEVE-NGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDGPRD 191 (782)
Q Consensus 113 Ga~~~~-~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~~~~~ 191 (782)
||++.+ ++++|+||||+|++|+|+++.. ..++|.+ ...| +|+++++++ .|.+|+|+|+..
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~~------------~~~~m~~--~~~G-~W~~~v~~~--~g~~Y~y~v~~~-- 61 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDDG------------EEIPMQR--DGDG-WFEAEVPGA--AGTRYRYRLDDG-- 61 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecCC------------CcccCcc--CCCc-EEEEEeCCC--CCCeEEEEECCC--
Confidence 788887 8999999999999999998731 1356642 3345 999999985 799999999731
Q ss_pred CCCCccccCceeeeCcccccc
Q 003977 192 WHQGHRFDSSIVLIDPYAKLV 212 (782)
Q Consensus 192 ~~~~~~~~~~~~~~DPyA~~~ 212 (782)
..+.||||+.+
T Consensus 62 ----------~~~~DP~a~~~ 72 (85)
T cd02853 62 ----------TPVPDPASRFQ 72 (85)
T ss_pred ----------cCCCCCccccC
Confidence 25799999986
No 49
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.24 E-value=2.1e-11 Score=108.46 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=60.2
Q ss_pred eCCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCC------CCCceEEEEEecCC
Q 003977 117 VENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLP------RSEVLYGYRVDGPR 190 (782)
Q Consensus 117 ~~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~------~~g~~Y~y~i~~~~ 190 (782)
.++|++|+||||+|++|+|++.++ +|+.. .++|.+ ...| +|+++||++. .+|..|+|+|...+
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn-----~W~~~---~~~m~k--~~~G-~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~ 71 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFN-----NWDRN---AHPLKK--DEFG-VWEITIPPNEDGSPAIPHGSKIKVRMVTPS 71 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCC-----CCCCc---CcccEE--CCCC-EEEEEECCcccccccCCCCCEEEEEEEeCC
Confidence 467999999999999999998776 35432 356643 3567 9999999731 37999999998632
Q ss_pred CCCCCccccCceeeeCccccccccc
Q 003977 191 DWHQGHRFDSSIVLIDPYAKLVEGR 215 (782)
Q Consensus 191 ~~~~~~~~~~~~~~~DPyA~~~~~~ 215 (782)
|. ....+||||+.++.+
T Consensus 72 ----G~----~~~~~DPyA~~~~~~ 88 (99)
T cd02854 72 ----GE----WIDRIPAWIKYVTQD 88 (99)
T ss_pred ----CC----EEEEcCcceeEEEeC
Confidence 21 235799999998754
No 50
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.00 E-value=2.2e-09 Score=97.25 Aligned_cols=86 Identities=29% Similarity=0.588 Sum_probs=61.9
Q ss_pred CCccEEeC----CcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEE
Q 003977 111 PIGVSEVE----NGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRV 186 (782)
Q Consensus 111 ~lGa~~~~----~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i 186 (782)
.||+|+.+ ++++|+||+|.|++|+|++.++. |... .++|.+ .+..| +|++.+++. ..+..|+|+|
T Consensus 9 ~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~-----~~~~---~~~m~~-~~~~G-~w~~~v~~~-~~~~~Y~~~v 77 (106)
T cd02855 9 KLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNG-----WDGR---RHPMRR-RGDSG-VWELFIPGL-GEGELYKYEI 77 (106)
T ss_pred hcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCC-----CCCc---ceecEE-CCCCC-EEEEEECCC-CCCCEEEEEE
Confidence 59999988 89999999999999999986542 3221 345632 12255 999999874 3577899999
Q ss_pred ecCCCCCCCccccCceeeeCccccccccc
Q 003977 187 DGPRDWHQGHRFDSSIVLIDPYAKLVEGR 215 (782)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~DPyA~~~~~~ 215 (782)
.... |. ...+.||||+.+...
T Consensus 78 ~~~~----g~----~~~~~DPYa~~~~~~ 98 (106)
T cd02855 78 LGAD----GH----LPLKADPYAFYSELR 98 (106)
T ss_pred ECCC----CC----EEEeeCCCceeeEeC
Confidence 8632 11 135789999987543
No 51
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.83 E-value=1.1e-08 Score=88.59 Aligned_cols=68 Identities=24% Similarity=0.462 Sum_probs=49.0
Q ss_pred CCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCC-ceEEEEEecCCCCCCCc
Q 003977 118 ENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSE-VLYGYRVDGPRDWHQGH 196 (782)
Q Consensus 118 ~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g-~~Y~y~i~~~~~~~~~~ 196 (782)
++.++|+||||.|++|+|+++++. + ..++|.+ ...| +|+++++.+. .+ +.|.|++++
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~-----~-----~~~~m~~--~~~G-~W~~~v~~l~-~g~Y~Y~~~vdg-------- 62 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGG-----A-----GSHPMTK--DEAG-VWSVTTGPLA-PGIYTYSFLVDG-------- 62 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCC-----C-----ccEeCeE--CCCe-EEEEEECCCC-CcEEEEEEEECC--------
Confidence 467999999999999999998752 1 2456743 4567 9999997543 34 456666654
Q ss_pred cccCceeeeCcccccc
Q 003977 197 RFDSSIVLIDPYAKLV 212 (782)
Q Consensus 197 ~~~~~~~~~DPyA~~~ 212 (782)
..+.||+++..
T Consensus 63 -----~~~~DP~s~~~ 73 (85)
T cd02858 63 -----VRVIDPSNPTT 73 (85)
T ss_pred -----eEecCCCCCce
Confidence 25689998654
No 52
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.83 E-value=1e-08 Score=89.78 Aligned_cols=89 Identities=22% Similarity=0.339 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCCCCCCCccccCcceeeccccCCCCCcEEEEEEEcCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEE
Q 003977 667 FFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRV 746 (782)
Q Consensus 667 ~~~~Li~lRk~~paL~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lVv~N~~~~~~~~~Lp~~~~~~~w~~l 746 (782)
|||+||+|||+||+|+.+++... .+. ...++.++++.|..+ ++.++|++|++++++++. + ...|+.+
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~---~~~----~~~~~~l~~~~r~~~-~~~l~v~~Nls~~~~~~~-~----~~~~~~l 67 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFL---EVE----RDAPDALLAFRRTGG-GERLLVAFNLSDEPVTVP-E----GPWGEVL 67 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEE---EEE----EEEETTEEEEEEEET-TEEEEEEEE-SSS-EEEE-T----SCCEEEE
T ss_pred CHHHHHHHHhhCccccCCCcccE---EEE----ecCCCEEEEEEEEcC-CceEEEEEecCCCcEEcc-C----CCCCeEE
Confidence 79999999999999999977543 111 023567788888656 689999999999999888 2 3466777
Q ss_pred ecCCCCCCCCCCCCCCCCCCceEEEcCcEEEEE
Q 003977 747 VDTNLESPDDIVPEGAAGTGSTYNLSPYSSILL 779 (782)
Q Consensus 747 ~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~~vl 779 (782)
+.+.... .+..+.|+|+|++|+
T Consensus 68 ~~s~~~~-----------~~~~~~L~p~~~~v~ 89 (89)
T PF11941_consen 68 FSSEPAR-----------AGGAGTLPPWSVVVL 89 (89)
T ss_dssp EECSCSS-----------E--EEEE-TTEEEEE
T ss_pred EcCCCcc-----------cccCceECCCEEEEC
Confidence 7665322 112799999999986
No 53
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.62 E-value=1.3e-07 Score=103.92 Aligned_cols=108 Identities=22% Similarity=0.303 Sum_probs=87.1
Q ss_pred CCCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCC
Q 003977 251 PEKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYST 330 (782)
Q Consensus 251 ~~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~ 330 (782)
|....+|.-+..... |+|....++|..++++|+|.|++.|+.+.++ .+=-|.+
T Consensus 4 pld~i~iQTvlsk~~-------------G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~--------------S~S~YSI 56 (423)
T PF14701_consen 4 PLDSISIQTVLSKWM-------------GPFSDWEKHLKVISEKGYNMIHFTPLQERGE--------------SNSPYSI 56 (423)
T ss_pred CCcceEEEEEhhhhc-------------CCHhHHHHHHHHHHHcCCcEEEecccccCCC--------------CCCCccc
Confidence 344556655555543 9999999999999999999999999999732 1226999
Q ss_pred CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHh-hCCcEEEEeeecccccCCCCCCCccccc
Q 003977 331 INFFSPMSRYAAGGGGPLKASWEFKEMVKALH-GAGIEVILDVVYNHTNEADDANPYTTSF 390 (782)
Q Consensus 331 ~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H-~~Gi~VIlDvV~NH~~~~~~~~~~~~~~ 390 (782)
.|...+++.+... +.....+++++||++++ +.||.+|.|||+|||+. +++|+...
T Consensus 57 ~Dql~~~~~~~~~--~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~NHtA~---nS~Wl~eH 112 (423)
T PF14701_consen 57 YDQLKFDPDFFPP--GKESTFEDVKEFVKEAEKKYGLLSMTDVVLNHTAN---NSPWLREH 112 (423)
T ss_pred cchhhcChhhcCC--CccccHHHHHHHHHHHHHHcCceEEEEEeeccCcC---CChHHHhC
Confidence 9999999999876 33345689999999995 79999999999999997 77887543
No 54
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.57 E-value=9.6e-08 Score=114.87 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=62.4
Q ss_pred CCCccEEeCCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEecC
Q 003977 110 FPIGVSEVENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDGP 189 (782)
Q Consensus 110 ~~lGa~~~~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~~~ 189 (782)
.-||||....|+.|+||||+|++|+|++.++. ....+|.. ....| +|+++|| +. .+..|+|+|..
T Consensus 19 ~~lGah~~~~g~~f~vwaP~A~~V~vvgdfn~----------~~~~~m~~-~~~~G-~w~~~ip-~~-~g~~YKy~i~~- 83 (726)
T PRK05402 19 SVLGPHPTGAGLVVRALLPGAEEVWVILPGGG----------RKLAELER-LHPRG-LFAGVLP-RK-GPFDYRLRVTW- 83 (726)
T ss_pred HhcCCCCCCCcEEEEEECCCCeEEEEEeecCC----------CccccceE-cCCCc-eEEEEec-CC-CCCCeEEEEEe-
Confidence 36999998889999999999999999998872 12345542 23466 9999999 65 79999999985
Q ss_pred CCCCCCccccCceeeeCcccccc
Q 003977 190 RDWHQGHRFDSSIVLIDPYAKLV 212 (782)
Q Consensus 190 ~~~~~~~~~~~~~~~~DPyA~~~ 212 (782)
. |. .....||||+..
T Consensus 84 ~----g~----~~~k~DPyaf~~ 98 (726)
T PRK05402 84 G----GG----EQLIDDPYRFGP 98 (726)
T ss_pred C----Cc----eeEeccccccCC
Confidence 3 22 246899999853
No 55
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.55 E-value=5.2e-07 Score=84.64 Aligned_cols=125 Identities=21% Similarity=0.302 Sum_probs=83.0
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
+-+++||++|+|+|.+.---. +.|-|-|+.-...+|.+. . +-|+++|++||++|
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h-----------------~g~ayYPt~~~~~hp~L~-~--------Dllge~v~a~h~~G 57 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCH-----------------GGYAYYPTKVGPRHPGLK-R--------DLLGEQVEACHERG 57 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccc-----------------cEEEEccCCCCcCCCCCC-c--------CHHHHHHHHHHHCC
Confidence 347899999999999753110 123344555556667776 4 78999999999999
Q ss_pred cEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCcc---CcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 003977 366 IEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVD 442 (782)
Q Consensus 366 i~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~---~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVD 442 (782)
|+|+.=+-++ ... . .. ..+|+|...+++|... .+...+....+-|...+++++..++--++.|.+|
T Consensus 58 irv~ay~~~~-~d~----~-~~-----~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~~D 126 (132)
T PF14871_consen 58 IRVPAYFDFS-WDE----D-AA-----ERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYDVD 126 (132)
T ss_pred CEEEEEEeee-cCh----H-HH-----HhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCCCC
Confidence 9999655554 211 0 00 1347888888777621 1111121112223356699999999999899999
Q ss_pred EEEEc
Q 003977 443 GFRFD 447 (782)
Q Consensus 443 GFR~D 447 (782)
||=||
T Consensus 127 GiF~D 131 (132)
T PF14871_consen 127 GIFFD 131 (132)
T ss_pred EEEec
Confidence 99988
No 56
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.52 E-value=5.5e-07 Score=97.37 Aligned_cols=142 Identities=21% Similarity=0.223 Sum_probs=83.2
Q ss_pred CHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 003977 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 359 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~ 359 (782)
+-..+.+.|+.|+++|+|+|.+-=....+.. +.+ -+.|...+.........+ -+-|+.||+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~------------Y~S-~~~p~s~~~~g~~~~~pg------~DpL~~~I~ 77 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDAL------------YPS-DIEPWSGYLTGKQGKDPG------FDPLEFMIE 77 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEE------------ecc-cccccccccCCCCCCCCC------ccHHHHHHH
Confidence 5567888899999999999997543221100 000 111111111111111111 267999999
Q ss_pred HHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCc---CCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003977 360 ALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNY---AGCGNTLNCNHPVVMELILDSLRHWV 436 (782)
Q Consensus 360 ~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~---~~~~~~ln~~~p~v~~~i~d~l~~W~ 436 (782)
+||++||+|..=+.+...... ...... .++.++..+..+..... .+..--||-.+|+||++|++.++-.+
T Consensus 78 eaHkrGlevHAW~~~~~~~~~--~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv 150 (311)
T PF02638_consen 78 EAHKRGLEVHAWFRVGFNAPD--VSHILK-----KHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIV 150 (311)
T ss_pred HHHHcCCEEEEEEEeecCCCc--hhhhhh-----cCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHH
Confidence 999999999988755443221 111110 11222222212211111 11123488999999999999999999
Q ss_pred HhcCccEEEEc
Q 003977 437 VEYHVDGFRFD 447 (782)
Q Consensus 437 ~e~gVDGFR~D 447 (782)
+.|.|||+.||
T Consensus 151 ~~YdvDGIhlD 161 (311)
T PF02638_consen 151 KNYDVDGIHLD 161 (311)
T ss_pred hcCCCCeEEec
Confidence 99999999999
No 57
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=98.36 E-value=9.1e-07 Score=85.26 Aligned_cols=114 Identities=18% Similarity=0.286 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCcccc-CcceeeccccCCCCCcEEEEEEEcCC---------CCeEEEEEeCCCCcEEE
Q 003977 663 SHYRFFSEVIKFRQSRRVFGREDFLNI-NDVTWHEDNWDNYDSKFLAFTLHDNN---------GADIYLAFNAHDFFVKV 732 (782)
Q Consensus 663 ~l~~~~~~Li~lRk~~paL~~g~~~~~-~~~~~~~~~~~~~~~~vlaf~R~~~~---------~~~~lVv~N~~~~~~~~ 732 (782)
...++|++|++||+++|.|+.++-..+ ..+.|++..- +...++|++...++. -+.++||||.+.+++++
T Consensus 42 ~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~-~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~~~t~ 120 (168)
T PF11852_consen 42 AASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGP-DQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPEEQTF 120 (168)
T ss_dssp HHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-ST-T--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS-EEE
T ss_pred HHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCC-CCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCCeEEE
Confidence 568999999999999999999986544 3578886542 456899999998742 14699999999999999
Q ss_pred EcCCCCCCCCeEEEecCCCCCCCCCCCCC-CCCCCceEEEcCcEEEEEEe
Q 003977 733 SLPPPPPKRQWFRVVDTNLESPDDIVPEG-AAGTGSTYNLSPYSSILLEA 781 (782)
Q Consensus 733 ~Lp~~~~~~~w~~l~~t~~~~~~~~~~~~-~~~~~~~i~l~p~s~~vl~~ 781 (782)
.+|... + |. |..-.....+...... .....++++|||+++.||+.
T Consensus 121 ~~~~~~--g-~~-Lhpvq~~~~D~~v~~a~~~~~~G~~tVPa~T~aVFv~ 166 (168)
T PF11852_consen 121 TVPGLA--G-FQ-LHPVQAESSDPVVKQASFDAANGTFTVPARTVAVFVQ 166 (168)
T ss_dssp ETGGGS--S--E-E-HHHHTGSGTTGGGTEEETTTTEEEE-TTEEEEEEE
T ss_pred EcCCcC--c-eE-echHHhcccchhhhceeEecCCCeEEECCceEEEEEe
Confidence 999642 2 44 4433322222222211 11235789999999999974
No 58
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.23 E-value=5.6e-06 Score=70.81 Aligned_cols=59 Identities=24% Similarity=0.460 Sum_probs=45.6
Q ss_pred CcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCC-CCceEEEEEecCC
Q 003977 119 NGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPR-SEVLYGYRVDGPR 190 (782)
Q Consensus 119 ~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~-~g~~Y~y~i~~~~ 190 (782)
++++|+||||.|++|+|++++++ + ...++|.+ ...| +|++.|+. .. .++.|+|++++..
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~-----~----~~~~~~~~--~~~g-~w~~~v~~-~~~~~~~Y~~~v~~~~ 63 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNG-----D----TQLIPMTK--VEDG-YWEVELPL-PSPGKYQYKYVLDGGK 63 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECC-----C----CCcccCEE--CCCc-eEEEEEcC-CCCCCeEEEEEEeCCC
Confidence 68999999999999999999863 1 12456643 3345 99999997 44 6899999999764
No 59
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.22 E-value=4.1e-06 Score=72.10 Aligned_cols=67 Identities=30% Similarity=0.588 Sum_probs=49.0
Q ss_pred cEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEecCCCCCCCcccc
Q 003977 120 GINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFD 199 (782)
Q Consensus 120 g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~~~~~~~~~~~~~ 199 (782)
.++|++|||.|++|+|++.++ +|+ .++|.+ ...| +|+++++ ++...+.|+|.|++..
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn-----~W~-----~~~m~~--~~~G-~w~~~~~-l~~G~y~Ykf~vdg~~--------- 59 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFN-----NWN-----AIPMER--EGDG-LWVVTVE-LRPGRYEYKFVVDGEW--------- 59 (82)
T ss_pred cEEEEEECCCCCEEEEEeECC-----CCC-----cccCEE--CCCC-cEEEEEe-CCCCcEEEEEEECCEE---------
Confidence 589999999999999999887 354 345642 3456 9999997 5533348999997521
Q ss_pred CceeeeCcccccc
Q 003977 200 SSIVLIDPYAKLV 212 (782)
Q Consensus 200 ~~~~~~DPyA~~~ 212 (782)
.+.||.+...
T Consensus 60 ---~~~DP~~~~~ 69 (82)
T cd02861 60 ---VIVDPNAAAY 69 (82)
T ss_pred ---eeCCCCCCce
Confidence 3589988764
No 60
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=97.98 E-value=7.4e-06 Score=72.57 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=53.5
Q ss_pred CCCCcEEEEEEEcCCCCeEEEEEeCCCC--cEEEEcCCCCCCCCeEEEecCCCCCCCCC--CCC-CC---CCCCceEEEc
Q 003977 701 NYDSKFLAFTLHDNNGADIYLAFNAHDF--FVKVSLPPPPPKRQWFRVVDTNLESPDDI--VPE-GA---AGTGSTYNLS 772 (782)
Q Consensus 701 ~~~~~vlaf~R~~~~~~~~lVv~N~~~~--~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~--~~~-~~---~~~~~~i~l~ 772 (782)
+.+++|+||.|.+.+++.++||+|+++. ...+.++.+. ++.|+++++++...-... ... .+ ......++||
T Consensus 6 d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~-~g~y~~vlnsd~~~~~g~~~~~~~~v~~~~~g~~~~~lp 84 (95)
T PF02806_consen 6 DNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPE-AGRYKEVLNSDDEEYGGSGKGNSGEVTVDSNGRITVTLP 84 (95)
T ss_dssp EESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSS-SEEEEETTTTTCEEEEESSCSETSEEEEETTSEEEEEES
T ss_pred cCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCC-cceeeEEeCCCccEECCcccccCceEEEeeCCEEEEEEC
Confidence 4678999999976422389999999987 4455554432 689999999975431110 000 00 0122479999
Q ss_pred CcEEEEEEeC
Q 003977 773 PYSSILLEAK 782 (782)
Q Consensus 773 p~s~~vl~~k 782 (782)
|+|++||+.|
T Consensus 85 ~~s~~vl~~~ 94 (95)
T PF02806_consen 85 PYSALVLKLK 94 (95)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEc
Confidence 9999999854
No 61
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=7.4e-05 Score=82.35 Aligned_cols=143 Identities=19% Similarity=0.049 Sum_probs=82.1
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
.+=..+.+.|+.|+.||||+|+..=....+....+ ...| -.++.|. .+.+++ +. +-|..+|
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS-~~~p------~s~~~~~-~~~~~~-----g~------DpLa~~I 121 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPS-AVLP------WSDGLPG-VLGVDP-----GY------DPLAFVI 121 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccc-cccc------cccCcCc-ccCCCC-----CC------ChHHHHH
Confidence 45567888899999999999995432221110000 0000 0011100 011121 11 6699999
Q ss_pred HHHhhCCcEEEEeeecccccCCC----CCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHH
Q 003977 359 KALHGAGIEVILDVVYNHTNEAD----DANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRH 434 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV~NH~~~~~----~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~ 434 (782)
++||++||+|+-=+-+--++... ..++....- +.....|+... |.. ...-||-.+|+||++|.+.+.-
T Consensus 122 ~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~-~~~~~~~~~~~--~~~-----~~~~ldPg~Pevq~~i~~lv~e 193 (418)
T COG1649 122 AEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTT-KRPGWVYVRHQ--GWG-----KRVWLDPGIPEVQDFITSLVVE 193 (418)
T ss_pred HHHHhcCCeeeechhhcccCCCCChhHhhCCCCccc-CCCCeEEEecC--Cce-----eeeEeCCCChHHHHHHHHHHHH
Confidence 99999999998777655554321 011111000 00111222221 110 0123788899999999999999
Q ss_pred HHHhcCccEEEEcc
Q 003977 435 WVVEYHVDGFRFDL 448 (782)
Q Consensus 435 W~~e~gVDGFR~D~ 448 (782)
-++.|.|||+.||-
T Consensus 194 vV~~YdvDGIQfDd 207 (418)
T COG1649 194 VVRNYDVDGIQFDD 207 (418)
T ss_pred HHhCCCCCceecce
Confidence 99999999999994
No 62
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.61 E-value=0.0022 Score=73.42 Aligned_cols=279 Identities=18% Similarity=0.178 Sum_probs=139.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHH---------hcCccEEEEccccccccCCCCCCCCChHHHHHHH---hccc------
Q 003977 414 GNTLNCNHPVVMELILDSLRHWVV---------EYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIA---KDAI------ 475 (782)
Q Consensus 414 ~~~ln~~~p~v~~~i~d~l~~W~~---------e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~---~~~~------ 475 (782)
.+|+|-.||.|+.+-+.++-|.+. +..+||||+||+..+.-+ +|+... ++..
T Consensus 143 aNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdAD----------lLqia~dyfkaaYgv~~~~ 212 (809)
T PF02324_consen 143 ANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDAD----------LLQIAGDYFKAAYGVDKND 212 (809)
T ss_dssp SEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-TH----------HHHHHHHHHHHHH-TTTBH
T ss_pred eccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHH----------HHHHHHHHHHHHhCCCcCh
Confidence 478899999999999999999986 788999999999998655 222211 1111
Q ss_pred --cCCceEEecccCCCCc-ccc--CCCCCcccchhhchhHHHHHHHHHhCCCCchhhHHHHhhcCcccccc--CCCCCcc
Q 003977 476 --LSRCKIIAEPWDCRGL-YLV--GKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRV--NKRKPYH 548 (782)
Q Consensus 476 --~~~~~ligE~w~~~~~-~~~--g~~~~~~~~~~~n~~f~~~i~~~~~g~~~~~~~~~~~l~~~~~~~~~--~~~~p~~ 548 (782)
.-.-+-|-|.|..... |.. |... -.|+..++-.+...+......++.+...+..+.--... .......
T Consensus 213 a~An~HlSilE~ws~nd~~y~~~~g~~q-----L~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~en~a~p 287 (809)
T PF02324_consen 213 ANANKHLSILEAWSSNDPDYVKDTGNPQ-----LTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDSTENEAQP 287 (809)
T ss_dssp HHHCTC--EESSSTTTHHHHHHHTTSSS-----BEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--SSESS-
T ss_pred hhHhhhheeeeccccCChHHHhcCCCce-----eeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCcCCcccC
Confidence 1133568899987632 221 1111 34566777777777666555555444444433211110 1122345
Q ss_pred eEEEeeccCCCCchhhhhhccccccccCCCCCCCCCCCCCcCCCCCCCCChHHH---HHHHH-----------HHHHHHH
Q 003977 549 SINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASI---KALRS-----------RQMKNFH 614 (782)
Q Consensus 549 ~vnfi~~HD~~tl~d~~~~~~~~~~~~g~~~~~g~~~n~sw~~g~~g~~~~~~~---~~~~~-----------~~~r~a~ 614 (782)
.-.||.+||.. ..+++...-+..... ..+|.. .+.+..- +.+-. --+-.+.
T Consensus 288 NYsFvrAHDse-vQ~vI~~II~~~i~~---~~dg~t-----------~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaY 352 (809)
T PF02324_consen 288 NYSFVRAHDSE-VQTVIAQIIKDKINP---NSDGLT-----------FTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAY 352 (809)
T ss_dssp EEEES-BSSTT-THHHHHHHHHHHT-T---TTCTTC-------------HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHH
T ss_pred ceeeeecccHH-HHHHHHHHHHhhcCC---cccCcc-----------CCHHHHHHHHHHHHHHHHHhhhhhhccccHHHH
Confidence 67899999975 223222211111100 001100 0111111 11111 1144567
Q ss_pred HHHHHcC-CeeeEeccccccCccCCCCCCCCCCCCCCccCCCccccccchHHHHHHHHHHHHhcCCCCCCCCccccCcce
Q 003977 615 LALMVSQ-GTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVT 693 (782)
Q Consensus 615 ~~ll~~p-GiP~iy~GdE~g~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~~~Li~lRk~~paL~~g~~~~~~~~~ 693 (782)
++||+-. -||-+||||-+-..++ | |. .+..-++-+-.|++-|.++-+= | .. . .+.
T Consensus 353 AllLtNKDTVPRVYYGDLYtDdGQ-----Y--------Ma------~KSpYyDaI~tLLKaRikYvaG--G-Qt-M-~~~ 408 (809)
T PF02324_consen 353 ALLLTNKDTVPRVYYGDLYTDDGQ-----Y--------MA------TKSPYYDAITTLLKARIKYVAG--G-QT-M-AVT 408 (809)
T ss_dssp HHHHH-SSSEEEEEHHHHBESSSS-----T--------TT------SB-TTHHHHHHHHHHHHHH--S----EE-E-EE-
T ss_pred HHHHhCCCCCceEEecccccccch-----h--------hh------hcCchHHHHHHHHHHHHHhhcC--C-ce-e-eee
Confidence 7777754 8999999998765442 2 11 2345688899999999987332 2 11 0 111
Q ss_pred eeccccCCCCCcEEEEEEEcCC-------------CC-eEEEEEeCC------CCcEEEEcCCCCCCCCeEEEecCC
Q 003977 694 WHEDNWDNYDSKFLAFTLHDNN-------------GA-DIYLAFNAH------DFFVKVSLPPPPPKRQWFRVVDTN 750 (782)
Q Consensus 694 ~~~~~~~~~~~~vlaf~R~~~~-------------~~-~~lVv~N~~------~~~~~~~Lp~~~~~~~w~~l~~t~ 750 (782)
+. ......||.=.|.+++ .+ -.+||-|.. .+.+.+.+.....+..++.|+.+-
T Consensus 409 ~~----~~~~~~vLtSVRyGkgam~a~d~G~~~tRt~Gi~vii~Nnp~l~l~~~d~v~lnMGaAHkNQ~YR~llltT 481 (809)
T PF02324_consen 409 YL----NGDNSGVLTSVRYGKGAMTATDTGTAETRTSGIGVIISNNPNLKLNSNDTVVLNMGAAHKNQAYRPLLLTT 481 (809)
T ss_dssp -E----EETTTSEEEEEE-BTTBSSTT----CCCCT--EEEEEES-TT-B--TT-EEEEE--GGGTT-EEEEEEEEE
T ss_pred cc----cCCCCceEEEEecCCCcCcccccCCccceeceeEEEEcCCcccccCCCCeEEEecchhhccccchhhhhcc
Confidence 11 0124579988887663 12 344444443 245666666666677888777553
No 63
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.59 E-value=7.3e-05 Score=84.95 Aligned_cols=109 Identities=22% Similarity=0.281 Sum_probs=64.3
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCC
Q 003977 252 EKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTI 331 (782)
Q Consensus 252 ~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~ 331 (782)
....||||=+- -|.+-+.. ...-+..-|++..+-+|++|||..||.|-+-+..+. +.-...-.-||+-.
T Consensus 562 LDSqvIYEgFS-NFQ~~~t~----~~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~------tFLDSiiqNGYAFt 630 (809)
T PF02324_consen 562 LDSQVIYEGFS-NFQDFPTT----PSEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDG------TFLDSIIQNGYAFT 630 (809)
T ss_dssp HHT-EEEE----TTB---SS----GGGSHHHHHHHTHHHHHHTTEEEEE----S-B--SS------SSHHHHTT-SSSBS
T ss_pred hhcchhhcccc-ccccCCCC----hHHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCC------cchhhHhhcCcccc
Confidence 45689998642 23222111 112677889999999999999999999988763211 00000112488877
Q ss_pred CCC----CCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccC
Q 003977 332 NFF----SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 379 (782)
Q Consensus 332 dy~----a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~ 379 (782)
|-| .-..+|||. +||+.-|+++|+.||+||.|+|++.+..
T Consensus 631 DRYDLg~s~ptKYGs~--------~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 631 DRYDLGMSKPTKYGSV--------EDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp -TT-SSSSS-BTTB-H--------HHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred chhhhcCCCCCCCCCH--------HHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 776 345789997 9999999999999999999999998764
No 64
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.52 E-value=0.00062 Score=74.79 Aligned_cols=95 Identities=21% Similarity=0.266 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhCCcEEEEeeecccccCCCCCCCcc---ccccCCCCCcceeeCCCCCcc----CcCCCCCCCCCCCHHHH
Q 003977 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYT---TSFRGIDNKVYYMVDGTGQLL----NYAGCGNTLNCNHPVVM 425 (782)
Q Consensus 353 elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~---~~~~~~~~~~yy~~d~~g~~~----~~~~~~~~ln~~~p~v~ 425 (782)
+.++||+++|++|++|++=+.+- +... .++.. ..+.......|+..+..|... .+.|.+.-+|+.||+++
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P~-i~~~--~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~ 162 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIPI-IKLR--PHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAA 162 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecCc-cccc--cccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHH
Confidence 58999999999999999855542 2110 11100 011111123566666555421 23333446899999999
Q ss_pred HHHHHHHHHHHHhcCccEEEEcccc
Q 003977 426 ELILDSLRHWVVEYHVDGFRFDLAS 450 (782)
Q Consensus 426 ~~i~d~l~~W~~e~gVDGFR~D~a~ 450 (782)
+...+.++.+++++|||||-+|...
T Consensus 163 ~Ww~~~~~~~~~~~Gidg~w~D~~E 187 (340)
T cd06597 163 QWWMEKRRYLVDELGIDGFKTDGGE 187 (340)
T ss_pred HHHHHHHHHHHHhcCCcEEEecCCC
Confidence 9999999999988999999999654
No 65
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.48 E-value=0.00069 Score=73.31 Aligned_cols=132 Identities=22% Similarity=0.385 Sum_probs=85.7
Q ss_pred CCHHHHHhhchHHHHcCC--cEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCC-CCCCCCCCCCchHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFK 355 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~-~yGt~~~~p~~~~~elk 355 (782)
-+-..|.+.++.++++|| ..|+|=--+. ..+| + |..|+ +| -+.+
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~-----------------~~~g----~-f~~d~~~F-----------Pdp~ 73 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWE-----------------TCYG----D-FDFDPTKF-----------PDPK 73 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCcc-----------------ccCC----c-cccChhhC-----------CCHH
Confidence 456778888999999996 4555432111 0111 2 22222 44 2489
Q ss_pred HHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCc--c--CcCCCCCCCCCCCHHHHHHHHHH
Q 003977 356 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL--L--NYAGCGNTLNCNHPVVMELILDS 431 (782)
Q Consensus 356 ~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~--~--~~~~~~~~ln~~~p~v~~~i~d~ 431 (782)
+||+++|++|+++++=+-+ +++. +++.+ +......|+..+++|.. . -+.+...-+|+.||++++++.+.
T Consensus 74 ~mi~~l~~~G~k~~l~i~P-~i~~---~s~~~---~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 146 (303)
T cd06592 74 GMIDQLHDLGFRVTLWVHP-FINT---DSENF---REAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSR 146 (303)
T ss_pred HHHHHHHHCCCeEEEEECC-eeCC---CCHHH---HhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHH
Confidence 9999999999999998877 3443 22222 22222445666554411 1 12233446899999999999999
Q ss_pred HHHHHHhcCccEEEEcccc
Q 003977 432 LRHWVVEYHVDGFRFDLAS 450 (782)
Q Consensus 432 l~~W~~e~gVDGFR~D~a~ 450 (782)
++..+.++|||||-+|...
T Consensus 147 ~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 147 LKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred HHHHHHHhCCcEEEeCCCC
Confidence 9999989999999999643
No 66
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.29 E-value=0.0014 Score=71.24 Aligned_cols=137 Identities=15% Similarity=0.184 Sum_probs=87.9
Q ss_pred CCHHHHHhhchHHHHcCC--cEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCC-CCCCCCCCCCCchHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPM-SRYAAGGGGPLKASWEFK 355 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d-~~yGt~~~~p~~~~~elk 355 (782)
.+=..+.+.++.+++.|| ++|+|=.=+.. +|.-.+ |..+ .+|- +.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~-------------------~~~~~~-f~~d~~~FP-----------d~~ 69 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMK-------------------EFQWCD-FEFDPDRFP-----------DPE 69 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccccc-------------------CCccee-eEECcccCC-----------CHH
Confidence 456678888999999995 55665432211 111112 2333 3442 478
Q ss_pred HHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccC---cCCCCCCCCCCCHHHHHHHHHHH
Q 003977 356 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN---YAGCGNTLNCNHPVVMELILDSL 432 (782)
Q Consensus 356 ~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~---~~~~~~~ln~~~p~v~~~i~d~l 432 (782)
+||+++|++|++|++-+.+ ++.. +++.+.. .....|+..+.++.... +.+.+--+|+.||++++++.+.+
T Consensus 70 ~~i~~l~~~G~~~~~~~~P-~i~~---~~~~~~e---~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 142 (308)
T cd06593 70 GMLSRLKEKGFKVCLWINP-YIAQ---KSPLFKE---AAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKL 142 (308)
T ss_pred HHHHHHHHCCCeEEEEecC-CCCC---CchhHHH---HHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHH
Confidence 9999999999999999875 4543 2232221 12234555554433221 22223458999999999999999
Q ss_pred HHHHHhcCccEEEEcccccccc
Q 003977 433 RHWVVEYHVDGFRFDLASVLCR 454 (782)
Q Consensus 433 ~~W~~e~gVDGFR~D~a~~l~~ 454 (782)
+.++ ++|||||-+|....++.
T Consensus 143 ~~~~-~~Gid~~~~D~~e~~p~ 163 (308)
T cd06593 143 KPLL-DMGVDCFKTDFGERIPT 163 (308)
T ss_pred HHHH-HhCCcEEecCCCCCCCc
Confidence 9988 68999999997665543
No 67
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=97.11 E-value=0.00031 Score=59.37 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=44.5
Q ss_pred CCCcEEEEEEEcCCCCeEEEEEeCCCCcEEEEcCCC----CCCCCeEEEecCCCCCCCCCCCCCCCCCCceEEEcCcEEE
Q 003977 702 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPP----PPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSI 777 (782)
Q Consensus 702 ~~~~vlaf~R~~~~~~~~lVv~N~~~~~~~~~Lp~~----~~~~~w~~l~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~~ 777 (782)
+.++|++|.|..+ +++++|++|..++++++.+... .......+++.+. .......++|+|++++
T Consensus 7 P~~gvYvYfR~~~-~~tVmVilN~n~~~~~ldl~ry~E~l~~~~~~~diltg~-----------~i~l~~~l~l~~~~~~ 74 (78)
T PF10438_consen 7 PQDGVYVYFRYYD-GKTVMVILNKNDKEQTLDLKRYAEVLGGFTSAKDILTGK-----------TIDLSKNLTLPPKSVL 74 (78)
T ss_dssp -BTTEEEEEEEES-SEEEEEEEE-SSS-EEEEGGGGHHHHTT--EEEETTT-------------EEE-SSEEEE-TTEEE
T ss_pred ccCCEEEEEEEcC-CCEEEEEEcCCCCCeEEcHHHHHHhhCCCcceEECCCCC-----------EEecCCcEEECCCceE
Confidence 4689999999988 8999999999999999998631 1122344444332 1223468999999999
Q ss_pred EEE
Q 003977 778 LLE 780 (782)
Q Consensus 778 vl~ 780 (782)
||+
T Consensus 75 ILe 77 (78)
T PF10438_consen 75 ILE 77 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 68
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.91 E-value=0.0044 Score=67.54 Aligned_cols=90 Identities=13% Similarity=0.223 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCc----cCcCCCCCCCCCCCHHHHHHH
Q 003977 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL----LNYAGCGNTLNCNHPVVMELI 428 (782)
Q Consensus 353 elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~----~~~~~~~~~ln~~~p~v~~~i 428 (782)
+.++||+++|++|++|++-+.+- +.. +++.+ +......|+..+.++.. .-+.+.+.-+|+.||+++++.
T Consensus 74 dp~~mi~~L~~~g~k~~~~i~P~-i~~---~~~~y---~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww 146 (317)
T cd06599 74 DPAAFVAKFHERGIRLAPNIKPG-LLQ---DHPRY---KELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWW 146 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-ccC---CCHHH---HHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHH
Confidence 57899999999999999866543 332 22322 22222456655543321 112233345899999999999
Q ss_pred HHHHHHHHHhcCccEEEEccc
Q 003977 429 LDSLRHWVVEYHVDGFRFDLA 449 (782)
Q Consensus 429 ~d~l~~W~~e~gVDGFR~D~a 449 (782)
.+.++.-+.+.|||||=+|..
T Consensus 147 ~~~~~~~~~~~Gvdg~w~D~~ 167 (317)
T cd06599 147 KEGVKEALLDLGIDSTWNDNN 167 (317)
T ss_pred HHHHHHHHhcCCCcEEEecCC
Confidence 999966666899999999954
No 69
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.00082 Score=78.23 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=67.3
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
|.+.....+|.-.|+.|+|-|++.|+.|-+. .+--|...|-..+++.+..... .-..+|.++||
T Consensus 139 Gpl~eWeprL~va~e~gYNmIHfTPlqelG~--------------S~S~YSl~dql~~~~~~~~~~~--k~s~eDV~~lV 202 (1521)
T KOG3625|consen 139 GPLDEWEPRLRVAKESGYNMIHFTPLQELGL--------------SRSCYSLADQLELNPDFSRPNR--KYSFEDVGQLV 202 (1521)
T ss_pred CChhhhhHHHHHHHHcCCceEeeeeHHHhcc--------------CCCccchHhhhhcChhhhccCC--CCCHHHHHHHH
Confidence 8888899999999999999999999998721 1114565555555555442100 00129999999
Q ss_pred HHHhh-CCcEEEEeeecccccCCCCCCCccc
Q 003977 359 KALHG-AGIEVILDVVYNHTNEADDANPYTT 388 (782)
Q Consensus 359 ~~~H~-~Gi~VIlDvV~NH~~~~~~~~~~~~ 388 (782)
+.||+ -||--|-|||+|||+. .++|+.
T Consensus 203 ~~l~rewnvlsi~DvV~NHtAn---ns~Wll 230 (1521)
T KOG3625|consen 203 EKLKREWNVLSITDVVYNHTAN---NSKWLL 230 (1521)
T ss_pred HHHHhhcCeeeeehhhhhcccc---CCchhH
Confidence 99997 7999999999999997 555653
No 70
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.80 E-value=0.0068 Score=66.66 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=61.4
Q ss_pred HHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCcc---CcCCCCCCCCCCCHHHHHHHHHH
Q 003977 355 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELILDS 431 (782)
Q Consensus 355 k~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~---~~~~~~~~ln~~~p~v~~~i~d~ 431 (782)
++||+++|++|++|++=+.+. +...... .....++......|+..+.+|... .+.|.+.-+|+.||++++...+.
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~-v~~~~~~-~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 146 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPA-ISANEPT-GSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDE 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCc-cccCcCC-CCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHH
Confidence 999999999999999976533 3321000 001112111123456665444321 12333445799999999999999
Q ss_pred HHHHHHhcCccEEEEcccc
Q 003977 432 LRHWVVEYHVDGFRFDLAS 450 (782)
Q Consensus 432 l~~W~~e~gVDGFR~D~a~ 450 (782)
++..+.++|||||=+|...
T Consensus 147 ~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 147 IKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred HHHHHhcCCCcEEEecCCC
Confidence 9999978999999999643
No 71
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.76 E-value=0.0076 Score=65.67 Aligned_cols=134 Identities=17% Similarity=0.207 Sum_probs=82.2
Q ss_pred CCHHHHHhhchHHHHcCC--cEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCC-CCCCCCCCCCchHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFK 355 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~-~yGt~~~~p~~~~~elk 355 (782)
.+-..+.+.++.+++.+| +.|+|=.=+. . +|. + |..|+ +| -+.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~-----------------~--~~~--~-f~~d~~~F-----------Pdp~ 67 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFLDIHYM-----------------D--SYR--L-FTWDPYRF-----------PEPK 67 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEEChhhh-----------------C--CCC--c-eeechhcC-----------CCHH
Confidence 456677778888888887 6666632110 0 121 1 12222 33 3478
Q ss_pred HHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCc---cCcCCCCCCCCCCCHHHHHHHHHHH
Q 003977 356 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL---LNYAGCGNTLNCNHPVVMELILDSL 432 (782)
Q Consensus 356 ~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~---~~~~~~~~~ln~~~p~v~~~i~d~l 432 (782)
+||+++|++|++|++=+.+- +.... ..+ .+.......|+..+.+|.. .-+.|...-+|+.||++++...+.+
T Consensus 68 ~~i~~l~~~g~k~~~~~~P~-i~~~~-~~~---~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~ 142 (317)
T cd06600 68 KLIDELHKRNVKLVTIVDPG-IRVDQ-NYS---PFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLF 142 (317)
T ss_pred HHHHHHHHCCCEEEEEeecc-ccCCC-CCh---HHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHH
Confidence 99999999999999966443 32211 111 1111112345555544431 1122323458999999999999999
Q ss_pred HHHHHhcCccEEEEcccc
Q 003977 433 RHWVVEYHVDGFRFDLAS 450 (782)
Q Consensus 433 ~~W~~e~gVDGFR~D~a~ 450 (782)
+..+.++|||||=+|...
T Consensus 143 ~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 143 SEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHhhcCCCceEEeeCCC
Confidence 998888999999999543
No 72
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=96.76 E-value=0.0032 Score=68.50 Aligned_cols=142 Identities=13% Similarity=0.199 Sum_probs=87.4
Q ss_pred CCHHHHHhhchHHHHcCC--cEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCC-CCCCCCCCCCchHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFK 355 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~-~yGt~~~~p~~~~~elk 355 (782)
++-..+.+.++.+++.|| .+|+|- .... . ....+||....-|..|+ +| -+.+
T Consensus 20 ~s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~-~------------~~~~~g~~~~~~f~~d~~~F-----------Pdp~ 74 (317)
T cd06594 20 GGTDKVLEALEKARAAGVKVAGLWLQ-DWTG-R------------RETSFGDRLWWNWEWDPERY-----------PGLD 74 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEc-cccC-c------------ccccccceeeeeeEEChhhC-----------CCHH
Confidence 366778888999999887 678774 2210 0 01122331110022222 33 3478
Q ss_pred HHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCcc---CcCCCCCCCCCCCHHHHHHHHHHH
Q 003977 356 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELILDSL 432 (782)
Q Consensus 356 ~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~---~~~~~~~~ln~~~p~v~~~i~d~l 432 (782)
+||+++|++|++|++-+. .++..+ ...+ ++......|+..+++|... .+.+.+.-+|+.||++++...+-+
T Consensus 75 ~mi~~Lh~~G~~~~~~i~-P~v~~~--~~~~---y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 148 (317)
T cd06594 75 ELIEELKARGIRVLTYIN-PYLADD--GPLY---YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVI 148 (317)
T ss_pred HHHHHHHHCCCEEEEEec-CceecC--Cchh---HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHH
Confidence 999999999999999554 444331 1111 1222224566665554321 122334568999999999999999
Q ss_pred HHHHHhcCccEEEEccccc
Q 003977 433 RHWVVEYHVDGFRFDLASV 451 (782)
Q Consensus 433 ~~W~~e~gVDGFR~D~a~~ 451 (782)
+..+.++|||||=+|....
T Consensus 149 ~~~~~~~Gvdg~w~D~~E~ 167 (317)
T cd06594 149 KEMLLDLGLSGWMADFGEY 167 (317)
T ss_pred HHHhhhcCCcEEEecCCCC
Confidence 9886689999999996543
No 73
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=96.67 E-value=0.017 Score=64.40 Aligned_cols=141 Identities=12% Similarity=0.173 Sum_probs=81.1
Q ss_pred CHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 003977 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 359 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~ 359 (782)
+-..|.+.++.++++|++.+.|= ......+.+. ....| |+..-..+|- ..|+.|++
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviD------DGW~~~r~~d----~~~~G----dW~~~~~kFP----------~Gl~~l~~ 111 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVID------DGWFGGRDDD----NAGLG----DWEPDPKKFP----------NGLKPLAD 111 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-------SSSBCTESTT----TSTTS----BECBBTTTST----------THHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCEEEEEc------CccccccCCC----cccCC----ceeEChhhhC----------CcHHHHHH
Confidence 34566667888899999876642 2111100000 01112 2221123442 67999999
Q ss_pred HHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 003977 360 ALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 439 (782)
Q Consensus 360 ~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~ 439 (782)
.+|++||+.=|=+-+--++.+ +..+. .+++|....+..... ....+--||+.+|+|+++|.+.+...++++
T Consensus 112 ~i~~~Gmk~GlW~ePe~v~~~---S~l~~-----~hPdw~l~~~~~~~~-~~r~~~vLD~~~pev~~~l~~~i~~ll~~~ 182 (394)
T PF02065_consen 112 YIHSLGMKFGLWFEPEMVSPD---SDLYR-----EHPDWVLRDPGRPPT-LGRNQYVLDLSNPEVRDYLFEVIDRLLREW 182 (394)
T ss_dssp HHHHTT-EEEEEEETTEEESS---SCHCC-----SSBGGBTCCTTSE-E-CBTTBEEB-TTSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCeEEEEeccccccch---hHHHH-----hCccceeecCCCCCc-CcccceEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999887776652 22221 124444332221111 111122489999999999999999999999
Q ss_pred CccEEEEccccccc
Q 003977 440 HVDGFRFDLASVLC 453 (782)
Q Consensus 440 gVDGFR~D~a~~l~ 453 (782)
|||.|.+|....+.
T Consensus 183 gidYiK~D~n~~~~ 196 (394)
T PF02065_consen 183 GIDYIKWDFNRDIT 196 (394)
T ss_dssp T-SEEEEE-TS-TT
T ss_pred CCCEEEeccccCCC
Confidence 99999999765553
No 74
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.66 E-value=0.014 Score=67.53 Aligned_cols=170 Identities=15% Similarity=0.246 Sum_probs=85.5
Q ss_pred CHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCC-----CCCCCCCCCCchHHHH
Q 003977 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-----RYAAGGGGPLKASWEF 354 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~-----~yGt~~~~p~~~~~el 354 (782)
+.....+.|+.|++.-||.|++= .|-|.-...+..+. .|-.. .+..-..+-+
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFY----------------------DW~~rH~~Pl~~~~~~~~~~w~D~-~~r~i~~~~V 172 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFY----------------------DWMYRHHKPLPGTNGQPDQTWTDW-ANRQISTSTV 172 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEET----------------------S--SBTTB-S-SSS-EEE-TT-TT-T--EEEHHHH
T ss_pred CchhHHHHHHHHHhhCcCeEEEE----------------------eeccccCCcCCCCCCchhhhhhhh-cCCEehHHHH
Confidence 56677788999999999999953 33333333333222 33221 1111224789
Q ss_pred HHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceee-CCCCC---ccCcCC-C---CCCCCCCCHHHHH
Q 003977 355 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMV-DGTGQ---LLNYAG-C---GNTLNCNHPVVME 426 (782)
Q Consensus 355 k~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~-d~~g~---~~~~~~-~---~~~ln~~~p~v~~ 426 (782)
|.+|++||+.||++|.=.-..-...+ +. -.|. .+.|+.. ++.+. ...+.. + .--+|..|+.=|+
T Consensus 173 k~yI~~ah~~Gmkam~Ynmiyaa~~~-----~~--~~gv-~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~ 244 (559)
T PF13199_consen 173 KDYINAAHKYGMKAMAYNMIYAANNN-----YE--EDGV-SPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQN 244 (559)
T ss_dssp HHHHHHHHHTT-EEEEEEESSEEETT---------S--S-S-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHH
T ss_pred HHHHHHHHHcCcceehhHhhhccccC-----cc--cccC-CchhhhhhccCCCccceeecCcccccceEEecCCCHHHHH
Confidence 99999999999999864332222211 00 0112 2334433 22221 111111 1 1135788999999
Q ss_pred HHHHHHHHHHHhcCccEEEEccccccccC--CCCCCC-CC----hHHHHHHHhccccCCceEE
Q 003977 427 LILDSLRHWVVEYHVDGFRFDLASVLCRG--TDGSPL-NA----PPLIRAIAKDAILSRCKII 482 (782)
Q Consensus 427 ~i~d~l~~W~~e~gVDGFR~D~a~~l~~~--~~g~~~-~~----~~~l~~i~~~~~~~~~~li 482 (782)
+|++-+...++++|+|||.+|..+..... ..|... .. ..||+++.+ ..|+..|+
T Consensus 245 yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~--~~~~k~lv 305 (559)
T PF13199_consen 245 YIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKE--ALPDKYLV 305 (559)
T ss_dssp HHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHH--HSTTSEEE
T ss_pred HHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHH--hCCCCcee
Confidence 99999999999999999999977744322 233333 21 246666654 23444443
No 75
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=96.51 E-value=0.02 Score=73.65 Aligned_cols=119 Identities=15% Similarity=0.199 Sum_probs=78.2
Q ss_pred HHHcCCeeeEeccccccCccCCCCCCCCCCCCCCccCCCcccc-------------------------ccchH-HHHHHH
Q 003977 617 LMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLET-------------------------KKNSH-YRFFSE 670 (782)
Q Consensus 617 ll~~pGiP~iy~GdE~g~~~~g~~n~y~~~~~~~~~~W~~~~~-------------------------~~~~l-~~~~~~ 670 (782)
-+|+||||=||+|.|+=.- +.-.+|.|.|+|+..... ....+ +-.+.+
T Consensus 1503 klt~PGVPD~YQG~E~wd~------SLVDPDNRRPVDf~~r~~~L~~l~~~~~~~~~~~~~~~l~~~~~dG~iKl~l~~~ 1576 (1693)
T PRK14507 1503 KLTLPGVPDTYQGTEFWDF------SLVDPDNRRPVDYAARARALEALGAMHAEGGHAACPDALLGSWQDGRIKLAVLWR 1576 (1693)
T ss_pred HHcCCCCCcccCCcccccc------cCcCCCCCCCCCHHHHHHHHHhhhhcccccccccchhhhhccCCCchHHHHHHHH
Confidence 4899999999999996532 123456666777652110 00112 355799
Q ss_pred HHHHHhcCCCC-CCCCccccCcceeeccccCCCCCcEEEEEEEcCCCCeEEEEEeC-----------------CCCcEEE
Q 003977 671 VIKFRQSRRVF-GREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNA-----------------HDFFVKV 732 (782)
Q Consensus 671 Li~lRk~~paL-~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lVv~N~-----------------~~~~~~~ 732 (782)
++++|++||.| ..|+|.++ .++- ...++++||.|..+ +..++||+=- .+....+
T Consensus 1577 ~L~lRr~~p~lF~~G~Y~PL-~~~G------~~~~hv~AFaR~~~-~~~~vvvvpR~~~~l~~~~~~~~~~~~~W~dT~~ 1648 (1693)
T PRK14507 1577 LLADRRARPALFRDGDYRPL-KAEG------ARAEHVVAFARRRG-GDDLVVAVPRLVARLAGEDGELPWSAEAWAGTVV 1648 (1693)
T ss_pred HHHHHHhChhhhccCCeeEE-eccC------CccccEEEEEecCC-CcEEEEEEecchhhhhcccccCCcccCCCCCCEE
Confidence 99999999965 67888765 1211 34678999999776 5666665421 2445678
Q ss_pred EcCCCCCCCCeEEEecCC
Q 003977 733 SLPPPPPKRQWFRVVDTN 750 (782)
Q Consensus 733 ~Lp~~~~~~~w~~l~~t~ 750 (782)
.||.. ..+.|+.++.+.
T Consensus 1649 ~LP~~-~~~~w~d~ltg~ 1665 (1693)
T PRK14507 1649 PLVLP-AGSRWVDVLTGR 1665 (1693)
T ss_pred eCCCc-cCccceEeccCc
Confidence 88853 345899999764
No 76
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.47 E-value=0.0063 Score=66.37 Aligned_cols=91 Identities=20% Similarity=0.330 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCc--cCcCCCCCCCCCCCHHHHHHHHH
Q 003977 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL--LNYAGCGNTLNCNHPVVMELILD 430 (782)
Q Consensus 353 elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~--~~~~~~~~~ln~~~p~v~~~i~d 430 (782)
+.++||+++|++|++||+-+. -++.. .++.+ +......|+..+..+.. ..+.+...-+|+.||++++...+
T Consensus 67 dp~~mi~~L~~~G~kv~~~i~-P~v~~---~~~~y---~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~ 139 (319)
T cd06591 67 DPKAMVRELHEMNAELMISIW-PTFGP---ETENY---KEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWK 139 (319)
T ss_pred CHHHHHHHHHHCCCEEEEEec-CCcCC---CChhH---HHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHH
Confidence 468999999999999999554 33433 22222 22223456666544332 12233345689999999999888
Q ss_pred HHHHHHHhcCccEEEEcccc
Q 003977 431 SLRHWVVEYHVDGFRFDLAS 450 (782)
Q Consensus 431 ~l~~W~~e~gVDGFR~D~a~ 450 (782)
.++.-+.++|||||=+|...
T Consensus 140 ~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 140 QLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred HHHHHhhcCCCcEEEecCCC
Confidence 77665558999999999654
No 77
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=96.45 E-value=0.013 Score=64.47 Aligned_cols=132 Identities=21% Similarity=0.253 Sum_probs=82.1
Q ss_pred CHHHHHhhchHHHHcCC--cEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCC-CCCCCCCCCCchHHHHHH
Q 003977 280 SYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFKE 356 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~-~yGt~~~~p~~~~~elk~ 356 (782)
+-..+.+.++.+++.|| ++|+|=+-+.. +|.. |..++ +| -+.++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-------------------~~~~---f~~d~~~f-----------Pdp~~ 68 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD-------------------GYRV---FTWDKERF-----------PDPKE 68 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC-------------------CCCc---eeeccccC-----------CCHHH
Confidence 55677788899999988 66776432211 1111 22222 33 24689
Q ss_pred HHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCc---cCcCCCCCCCCCCCHHHHHHHHHHHH
Q 003977 357 MVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL---LNYAGCGNTLNCNHPVVMELILDSLR 433 (782)
Q Consensus 357 LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~---~~~~~~~~~ln~~~p~v~~~i~d~l~ 433 (782)
||+++|++|++|++=+.+ |+.... ..+ .++......|+..+.+|.. ..+.|...-+|+.||+++++..+.++
T Consensus 69 m~~~l~~~g~~~~~~~~P-~v~~~~-~~~---~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 143 (339)
T cd06604 69 LIKELHEQGFKVVTIIDP-GVKVDP-GYD---VYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYK 143 (339)
T ss_pred HHHHHHHCCCEEEEEEeC-ceeCCC-CCh---HHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHH
Confidence 999999999999977654 222110 111 1221122345555544432 12223234579999999999999999
Q ss_pred HHHHhcCccEEEEcccc
Q 003977 434 HWVVEYHVDGFRFDLAS 450 (782)
Q Consensus 434 ~W~~e~gVDGFR~D~a~ 450 (782)
..+ +.|||||=+|...
T Consensus 144 ~~~-~~Gvdg~w~D~~E 159 (339)
T cd06604 144 KFV-DLGVDGIWNDMNE 159 (339)
T ss_pred HHh-hCCCceEeecCCC
Confidence 887 7999999999653
No 78
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=96.26 E-value=0.0098 Score=67.99 Aligned_cols=97 Identities=23% Similarity=0.374 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCc---cCcCCCCCCCCCCCHHHHHHH
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL---LNYAGCGNTLNCNHPVVMELI 428 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~---~~~~~~~~~ln~~~p~v~~~i 428 (782)
.++++|++.+|++|++|++-+.+. +.. .++-...++......|+..+++|.. ..+.+.+.-+|+.||+++++.
T Consensus 83 Pd~~~~~~~l~~~G~~~~~~~~P~-v~~---~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~ 158 (441)
T PF01055_consen 83 PDPKQMIDELHDQGIKVVLWVHPF-VSN---DSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWW 158 (441)
T ss_dssp TTHHHHHHHHHHTT-EEEEEEESE-EET---TTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHH
T ss_pred cchHHHHHhHhhCCcEEEEEeecc-cCC---CCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHH
Confidence 468999999999999999998873 332 1110111222222345555554421 112222346899999999999
Q ss_pred HHHHHHHHHhcCccEEEEcccccc
Q 003977 429 LDSLRHWVVEYHVDGFRFDLASVL 452 (782)
Q Consensus 429 ~d~l~~W~~e~gVDGFR~D~a~~l 452 (782)
.+.++..++.+|||||-+|.....
T Consensus 159 ~~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 159 KEQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHHHHTTST-SEEEEESTTTB
T ss_pred HHHHHHHHhccCCceEEeecCCcc
Confidence 999999997789999999964433
No 79
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=96.23 E-value=0.011 Score=47.21 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=30.2
Q ss_pred EEEEEcCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCceEEEcCcEEEEEE
Q 003977 708 AFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 780 (782)
Q Consensus 708 af~R~~~~~~~~lVv~N~~~~~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~~vl~ 780 (782)
+-.|.++ +..+++++|+++++++++||. .+.++++..... ..++|+|+.+.||+
T Consensus 4 v~~R~~~-~~~y~F~~N~s~~~~~v~l~~-----~~~dll~g~~~~-------------~~~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 4 VTVREND-GGRYLFLLNFSDEPQTVTLPE-----SYTDLLTGETVS-------------GGLTLPPYGVRVLK 57 (58)
T ss_dssp EEE-----ETTEEEEEE-SSS-EE----T-----T-EEEES--------------------SEE-TTEEEEEE
T ss_pred EEEEEcC-CCEEEEEEECCCCCEEEEcCC-----CceecccCccee-------------eEEEECCCEEEEEE
Confidence 3456444 678999999999999999974 678888765322 23899999999996
No 80
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=96.17 E-value=0.18 Score=58.16 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecc
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYN 375 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~N 375 (782)
++++++.+.||++||++|.|+.+-
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpig 221 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIY 221 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecc
Confidence 678889999999999999999763
No 81
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.17 E-value=0.048 Score=58.76 Aligned_cols=138 Identities=17% Similarity=0.128 Sum_probs=83.9
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
|+=..+-+.|+.|++-|+|+|-+-==-+ .+.-.|....-.+ ...|.. ...+.++++|+
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVIDvKdd----------------~G~i~y~s~~~~~--~~~ga~----~~~i~D~~~l~ 67 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVIDVKDD----------------DGNITYDSQVPLA--REIGAV----KPYIKDLKALV 67 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEEecC----------------CceEEecCCCchh--hhcccc----cccccCHHHHH
Confidence 4445566678999999999997531100 1222343322111 222322 11147899999
Q ss_pred HHHhhCCcEEEEeeec-ccccCCCCCCCccccccCCCCCcceeeCCCCCc-cCcCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003977 359 KALHGAGIEVILDVVY-NHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL-LNYAGCGNTLNCNHPVVMELILDSLRHWV 436 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV~-NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~-~~~~~~~~~ln~~~p~v~~~i~d~l~~W~ 436 (782)
++||++||.+|.=+|. .-. .+. ..++.|.....+|.. .+..+ ..=+|--+++|++|+++.++...
T Consensus 68 ~~l~e~gIY~IARIv~FkD~--------~la----~~~pe~av~~~~G~~w~d~~~-~~WvnP~~~evw~Y~i~IA~Eaa 134 (316)
T PF13200_consen 68 KKLKEHGIYPIARIVVFKDP--------VLA----EAHPEWAVKTKDGSVWRDNEG-EAWVNPYSKEVWDYNIDIAKEAA 134 (316)
T ss_pred HHHHHCCCEEEEEEEEecCh--------HHh----hhChhhEEECCCCCcccCCCC-CccCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999873 211 110 112444443333321 11111 12267778999999999999998
Q ss_pred HhcCccEEEEcccccc
Q 003977 437 VEYHVDGFRFDLASVL 452 (782)
Q Consensus 437 ~e~gVDGFR~D~a~~l 452 (782)
..|+|.+-||-+..=
T Consensus 135 -~~GFdEIqfDYIRFP 149 (316)
T PF13200_consen 135 -KLGFDEIQFDYIRFP 149 (316)
T ss_pred -HcCCCEEEeeeeecC
Confidence 789999999965443
No 82
>PLN02635 disproportionating enzyme
Probab=96.12 E-value=0.034 Score=64.28 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhCCcEEEEeeec
Q 003977 352 WEFKEMVKALHGAGIEVILDVVY 374 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~ 374 (782)
++++++-+.||++||++|-|+.+
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi 246 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPI 246 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeec
Confidence 57788999999999999999984
No 83
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.05 E-value=0.54 Score=57.03 Aligned_cols=92 Identities=21% Similarity=0.289 Sum_probs=63.8
Q ss_pred HHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCC---CCCCCCCCCHHHHHHHH
Q 003977 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAG---CGNTLNCNHPVVMELIL 429 (782)
Q Consensus 353 elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~---~~~~ln~~~p~v~~~i~ 429 (782)
+.|+||+.+|++||++|+=+.+.-.. +++.+ +......|+..+++|....+.. .+.-+||.||++|+...
T Consensus 322 ~pk~mi~~l~~~Gikl~~~i~P~i~~----d~~~~---~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~ 394 (772)
T COG1501 322 DPKQMIAELHEKGIKLIVIINPYIKQ----DSPLF---KEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWA 394 (772)
T ss_pred CHHHHHHHHHhcCceEEEEecccccc----CCchH---HHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHH
Confidence 46799999999999999887664433 23333 2222345777776665544332 23567999999999999
Q ss_pred HH-HHHHHHhcCccEEEEcccccc
Q 003977 430 DS-LRHWVVEYHVDGFRFDLASVL 452 (782)
Q Consensus 430 d~-l~~W~~e~gVDGFR~D~a~~l 452 (782)
+. ...++ ++|||||=.|.....
T Consensus 395 ~~~~~~l~-d~Gv~g~W~D~nEp~ 417 (772)
T COG1501 395 SDKKKNLL-DLGVDGFWNDMNEPE 417 (772)
T ss_pred HHHHhHHH-hcCccEEEccCCCCc
Confidence 54 45566 899999999965444
No 84
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=95.57 E-value=0.059 Score=45.92 Aligned_cols=54 Identities=24% Similarity=0.513 Sum_probs=39.3
Q ss_pred cEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEec
Q 003977 120 GINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDG 188 (782)
Q Consensus 120 g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~~ 188 (782)
-++|+..+ .|++|.|++.++ +|+. .++|.+ ...| |.+.++ ++...+.|+|.|++
T Consensus 3 ~v~f~~~~-~a~~V~v~G~F~-----~W~~----~~pm~~--~~~~--~~~~~~-L~~g~y~YkF~Vdg 56 (79)
T cd02859 3 PTTFVWPG-GGKEVYVTGSFD-----NWKK----KIPLEK--SGKG--FSATLR-LPPGKYQYKFIVDG 56 (79)
T ss_pred EEEEEEcC-CCcEEEEEEEcC-----CCCc----cccceE--CCCC--cEEEEE-cCCCCEEEEEEECC
Confidence 47898777 899999999887 3543 367743 2333 999986 66556789999976
No 85
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=95.51 E-value=0.11 Score=61.62 Aligned_cols=139 Identities=15% Similarity=0.047 Sum_probs=78.2
Q ss_pred CHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 003977 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 359 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~ 359 (782)
+-+.|...|+.||++|+|+|+|--+.+-+.+ |....-|| |+ ++-+.-.+-. +.+.-.+
T Consensus 332 q~~~L~~lLdrlk~~G~ntV~lqafadp~gd----------------~~~~s~yf-P~-~~lp~r~d~f---~~~aw~l- 389 (671)
T PRK14582 332 QDRNIDVLIQRVKDMQISTVYLQAFADPDGD----------------GLVKELYF-PN-RLLPMRADLF---NRVAWQL- 389 (671)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCCCCC----------------cccccccc-Cc-cccccccCCc---CHHHHHH-
Confidence 4577888899999999999999876553110 22222222 12 2222111111 2233333
Q ss_pred HHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 003977 360 ALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 439 (782)
Q Consensus 360 ~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~ 439 (782)
+|++|++|..=+-+=-++-.. ..+....++ .. .+...--..+...|+-.+|+||+.|.++..-.++.+
T Consensus 390 -~~r~~v~v~AWmp~~~~~~~~-~~~~~~~~~---------~~-~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~~ 457 (671)
T PRK14582 390 -RTRAGVNVYAWMPVLSFDLDP-TLPRVKRLD---------TG-EGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGHA 457 (671)
T ss_pred -HHhhCCEEEEeccceeeccCC-Ccchhhhcc---------cc-CCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 999999998766433222100 111110010 00 000000001133488889999999999999999989
Q ss_pred CccEEEEcccccc
Q 003977 440 HVDGFRFDLASVL 452 (782)
Q Consensus 440 gVDGFR~D~a~~l 452 (782)
.|||+-||--..+
T Consensus 458 ~~dGilf~Dd~~l 470 (671)
T PRK14582 458 AFDGILFHDDAVL 470 (671)
T ss_pred CCceEEecccccc
Confidence 9999999954444
No 86
>smart00632 Aamy_C Aamy_C domain.
Probab=95.46 E-value=0.05 Score=46.58 Aligned_cols=70 Identities=16% Similarity=0.272 Sum_probs=45.2
Q ss_pred CCCcEEEEEEEcCCCCeEEEEEeCCCCcEEEEcCCCCCCCCeEEEecCCCCCCCCCCCCCCC-CCCceEEEcCcEEEEE
Q 003977 702 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAA-GTGSTYNLSPYSSILL 779 (782)
Q Consensus 702 ~~~~vlaf~R~~~~~~~~lVv~N~~~~~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~~~~~~~-~~~~~i~l~p~s~~vl 779 (782)
.++.+|+|.| ++..+|++|.+...++..+....+.+.|++++...... ..+. +. .....++|+|.+++++
T Consensus 6 ~~~~~laF~R----g~~g~VaiN~~~~~~~~~~~t~lp~G~Y~d~l~g~~~g-~~v~---V~~~G~~~~~l~~~~~v~i 76 (81)
T smart00632 6 NGDNQIAFER----GSKGFVAINRSDSDLTITLQTSLPAGTYCDVISGLCTG-KSVT---VGSNGIATFTLPAGGAVAI 76 (81)
T ss_pred CCCeEEEEEC----CCeEEEEEECCCCceEEEEeecCCCcceEEEecCcccC-CEEE---ECCCCEEEEEECCCCeEEE
Confidence 3455999999 57799999998887777765534457799888741110 0010 11 1234799999995444
No 87
>PRK10658 putative alpha-glucosidase; Provisional
Probab=95.20 E-value=0.04 Score=65.78 Aligned_cols=93 Identities=16% Similarity=0.263 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCcc---CcCCCCCCCCCCCHHHHHHHH
Q 003977 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELIL 429 (782)
Q Consensus 353 elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~---~~~~~~~~ln~~~p~v~~~i~ 429 (782)
+.++||+++|++|++|++-+.+ ++.. +++.+ +......|+..+++|... .|.+...-+|+.||++++...
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~---~s~~f---~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~ 398 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQ---KSPLF---KEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYA 398 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCC---CchHH---HHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHH
Confidence 4688999999999999987655 2332 22222 212224566666655432 233333468999999999999
Q ss_pred HHHHHHHHhcCccEEEEccccccc
Q 003977 430 DSLRHWVVEYHVDGFRFDLASVLC 453 (782)
Q Consensus 430 d~l~~W~~e~gVDGFR~D~a~~l~ 453 (782)
+-++.++ +.|||||-.|....++
T Consensus 399 ~~~~~l~-d~Gvdgfw~D~gE~~p 421 (665)
T PRK10658 399 DKLKGLL-DMGVDCFKTDFGERIP 421 (665)
T ss_pred HHHHHHH-hcCCcEEEecCCceee
Confidence 9999987 7999999999654443
No 88
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=94.86 E-value=0.039 Score=64.14 Aligned_cols=96 Identities=10% Similarity=0.130 Sum_probs=61.5
Q ss_pred HHHHcCCeeeEeccccccCccCCCCCCCCCCCCCCccCCCccc---------------cccch-HHHHHHHHHHHHhcCC
Q 003977 616 ALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE---------------TKKNS-HYRFFSEVIKFRQSRR 679 (782)
Q Consensus 616 ~ll~~pGiP~iy~GdE~g~~~~g~~n~y~~~~~~~~~~W~~~~---------------~~~~~-l~~~~~~Li~lRk~~p 679 (782)
+-+|.||||=||+|.|.-..- --.+|.|.+.|+.... ..... =...+.+++++|+++|
T Consensus 714 lkltaPGVPD~YQGtE~wd~S------LVDPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~~~~ 787 (889)
T COG3280 714 LKLTAPGVPDIYQGTELWDFS------LVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRREHP 787 (889)
T ss_pred HHHcCCCCCccccchhhhhcc------ccCCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHHhch
Confidence 348999999999999965332 1223444454443221 11001 1235689999999998
Q ss_pred C-CCCCCccccCcceeeccccCCCCCcEEEEEEEcCCCCeEEEEEeC
Q 003977 680 V-FGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNA 725 (782)
Q Consensus 680 a-L~~g~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~lVv~N~ 725 (782)
. |..|++.++. +. -...+.++||.|... ++.++++.+.
T Consensus 788 elF~~GdY~Pl~-~~------G~~a~hviAFaR~~~-~~~~i~v~Pr 826 (889)
T COG3280 788 ELFAGGDYLPLF-AA------GPAADHVIAFARGKD-DQFAITVAPR 826 (889)
T ss_pred HhhcCCCeeeec-cc------CchhHHHHHHhhccC-CceeEEeehH
Confidence 7 7888887662 00 134578999999776 6677777764
No 89
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.79 E-value=0.08 Score=57.71 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcc-eeeCCCCCc---cCcCCCCCCCCCCCHHHHHHH
Q 003977 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY-YMVDGTGQL---LNYAGCGNTLNCNHPVVMELI 428 (782)
Q Consensus 353 elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~y-y~~d~~g~~---~~~~~~~~~ln~~~p~v~~~i 428 (782)
+.++||+++|++|++|++=+.+- +.. +++.+.. .....| +.....+.. .-+.+.+--+|+.||++++..
T Consensus 71 dp~~mi~~L~~~G~k~~~~v~P~-v~~---~~~~y~e---~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~ 143 (317)
T cd06598 71 DPAGMIADLAKKGVKTIVITEPF-VLK---NSKNWGE---AVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWF 143 (317)
T ss_pred CHHHHHHHHHHcCCcEEEEEcCc-ccC---CchhHHH---HHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHH
Confidence 46889999999999999987532 222 2232211 112234 333222221 112223346789999999999
Q ss_pred HHHHHHHHHhcCccEEEEccc
Q 003977 429 LDSLRHWVVEYHVDGFRFDLA 449 (782)
Q Consensus 429 ~d~l~~W~~e~gVDGFR~D~a 449 (782)
.+.++..+ +.|||||=+|..
T Consensus 144 ~~~~~~~~-~~Gvdg~w~D~~ 163 (317)
T cd06598 144 HDNYKKLI-DQGVTGWWGDLG 163 (317)
T ss_pred HHHHHHhh-hCCccEEEecCC
Confidence 99998875 899999999954
No 90
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=94.74 E-value=0.13 Score=56.72 Aligned_cols=133 Identities=13% Similarity=0.060 Sum_probs=82.6
Q ss_pred CCHHHHHhhchHHHHcCC--cEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCC-CCCCCCCCCCchHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFK 355 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~-~yGt~~~~p~~~~~elk 355 (782)
.+-..+.+.++.+++.|| +.|+|=.=+. -+|. .|..|+ +| -+.+
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-------------------~~~~---~f~~d~~~F-----------Pdp~ 67 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-------------------DGKR---YFTWDKKKF-----------PDPE 67 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEChHHh-------------------CCCC---ceEeCcccC-----------CCHH
Confidence 456677788888888887 5566542110 0221 133333 33 3578
Q ss_pred HHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCc---cCcCCCCCCCCCCCHHHHHHHHHHH
Q 003977 356 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL---LNYAGCGNTLNCNHPVVMELILDSL 432 (782)
Q Consensus 356 ~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~---~~~~~~~~~ln~~~p~v~~~i~d~l 432 (782)
+||+++|++|++|++-+.+--... ...+. ++......|+..+..|.. ..+.|...-+|+.||++++...+-+
T Consensus 68 ~mi~~L~~~G~k~~~~~~P~v~~~--~~~~~---y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 142 (339)
T cd06603 68 KMQEKLASKGRKLVTIVDPHIKRD--DGYYV---YKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLF 142 (339)
T ss_pred HHHHHHHHCCCEEEEEecCceecC--CCCHH---HHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHH
Confidence 999999999999999876433211 01121 211222345555544422 1233334568999999999999999
Q ss_pred HHHHH--hcCccEEEEccc
Q 003977 433 RHWVV--EYHVDGFRFDLA 449 (782)
Q Consensus 433 ~~W~~--e~gVDGFR~D~a 449 (782)
+..+. ..|||||=+|..
T Consensus 143 ~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 143 SYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred HHHhhcccCCCceEEeccC
Confidence 98875 469999999954
No 91
>PRK10426 alpha-glucosidase; Provisional
Probab=94.71 E-value=0.065 Score=63.78 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccC---cCCCCCCCCCCCHHHHHHH
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN---YAGCGNTLNCNHPVVMELI 428 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~---~~~~~~~ln~~~p~v~~~i 428 (782)
-+.++||+++|++|++|++=+.+-- .. +++.+ +......|+..+.+|.... +.+.+.-+|+.||++++..
T Consensus 269 Pdp~~mi~~L~~~G~k~v~~i~P~v-~~---~~~~y---~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww 341 (635)
T PRK10426 269 PQLDSRIKQLNEEGIQFLGYINPYL-AS---DGDLC---EEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWF 341 (635)
T ss_pred CCHHHHHHHHHHCCCEEEEEEcCcc-CC---CCHHH---HHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHH
Confidence 3589999999999999998875432 21 12222 2222245666665543211 1122235899999999999
Q ss_pred HHHHHHHHHhcCccEEEEcccccccc
Q 003977 429 LDSLRHWVVEYHVDGFRFDLASVLCR 454 (782)
Q Consensus 429 ~d~l~~W~~e~gVDGFR~D~a~~l~~ 454 (782)
.+.++..+.++|||||=.|....++.
T Consensus 342 ~~~~~~~~~~~Gvdg~w~D~~E~~p~ 367 (635)
T PRK10426 342 KEVIKKNMIGLGCSGWMADFGEYLPT 367 (635)
T ss_pred HHHHHHHHhhcCCCEEeeeCCCCCCC
Confidence 99987777789999999997655443
No 92
>PLN02950 4-alpha-glucanotransferase
Probab=94.36 E-value=0.67 Score=57.25 Aligned_cols=173 Identities=20% Similarity=0.280 Sum_probs=96.0
Q ss_pred cEEEEEEcCC---CCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCC--CCceEEEEEecCC---C
Q 003977 120 GINFAIFSQH---ATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPR--SEVLYGYRVDGPR---D 191 (782)
Q Consensus 120 g~~F~vwaP~---a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~--~g~~Y~y~i~~~~---~ 191 (782)
.|+|+|-+|. -++|.|++.-+. .++|+.. ..++|.. .....|++.+.- +. ....|+|.+.... .
T Consensus 154 ~V~F~v~~~~~~~Gq~v~VvGs~~e--LGnW~~~--~a~~Ls~---~~~p~W~~~v~l-p~~~~~~EYKyv~~~~~g~v~ 225 (909)
T PLN02950 154 VVRFKIACPRLEEGTSVYVTGSIAQ--LGNWQVD--DGLKLNY---TGDSIWEADCLV-PKSDFPIKYKYALQTAEGLVS 225 (909)
T ss_pred eEEEEEecCccCCCCeEEEEechhh--cCCCCcc--ccccccc---CCCCcEEEEEEe-cCCCceEEEEEEEEcCCCceE
Confidence 4899999985 567777776554 4568744 3456642 234489998862 21 2468999886432 1
Q ss_pred CCCCccccCceeeeCccccccccccccCccccccccccccccCCCCCCCCCCCCCCCCCCCCC-eEEEEEecccccCCCC
Q 003977 192 WHQGHRFDSSIVLIDPYAKLVEGRRHFGDASAKLSKFLGTYEFESLPFDWGDNYKLPNIPEKD-LVIYEMNVRAFTGDES 270 (782)
Q Consensus 192 ~~~~~~~~~~~~~~DPyA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~p~~~~~~-~vIYei~v~~Ft~~~~ 270 (782)
|..| +++.+.-|=.... ...+ +...... .. ...|+. .|+ +|+-+.....+
T Consensus 226 WE~g----~NR~~~~p~~~~~------------~~~~---~~~~~~~------~~--~~~~R~~Gi~--~~l~SLrS~~s 276 (909)
T PLN02950 226 LELG----VNRELSLDSSSGK------------PPSY---IVASDGA------FR--EMPWRGAGVA--VPVFSIRSEED 276 (909)
T ss_pred EeeC----CCceeecCcccCC------------ceEE---Eeccccc------cc--CCCccceEEE--EecccCCCCCC
Confidence 2111 1122222210000 0000 0000000 11 111222 332 34444433334
Q ss_pred CCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCC
Q 003977 271 SGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAG 343 (782)
Q Consensus 271 ~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~ 343 (782)
-|+ |||.++.+-+|.+++.|...|+|+|+.+..... + ...+-.|.+.+-|+.+|-|=+.
T Consensus 277 ~GI-----GDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~------~---~~~SsPYs~~S~falNPlyI~l 335 (909)
T PLN02950 277 VGV-----GEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHG------M---WWDSYPYSSLSVFALHPLYLRV 335 (909)
T ss_pred CCe-----eCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCC------C---CCCCCCcCcccccccChhhcCH
Confidence 466 999999999999999999999999998752100 0 0011268899999999888764
No 93
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=94.18 E-value=0.16 Score=60.68 Aligned_cols=181 Identities=18% Similarity=0.190 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhhCCc--EEEEeeecccccCCCCCCCccc------cccCCCCCcceeeCCCCCccCcCCCCCCCCCCC-
Q 003977 351 SWEFKEMVKALHGAGI--EVILDVVYNHTNEADDANPYTT------SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNH- 421 (782)
Q Consensus 351 ~~elk~LV~~~H~~Gi--~VIlDvV~NH~~~~~~~~~~~~------~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~- 421 (782)
-++++++-+.|+++|| ++|-|+.+-=...+ ..-|.. ...-..+|++|.. .|+ +|. .|.+|+..
T Consensus 354 ~~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~ds--aDvWa~~~~F~l~~~~GaPPD~fs~--~GQ--~WG--~P~y~w~~l 425 (695)
T PRK11052 354 DSQFAACWQLSQQLGMPIGLYRDLAVGVAEGG--AETWCDRELYCLKASVGAPPDILGP--LGQ--NWG--LPPMDPHVL 425 (695)
T ss_pred HHHHHHHHHHHHHCCCceeEEEeeeceECCCc--HHHhCCHHHhcCCCcCCCCCCcCCc--ccc--cCC--CcCcCHHHH
Confidence 3567888889999999 67999975322111 111211 0111223555432 222 111 12333211
Q ss_pred -HHHHHHHHHHHHHHHHhcCccEEEEccccccccC---------CCCCCC--CChHHHHHHHhccccCCceEEecccCCC
Q 003977 422 -PVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG---------TDGSPL--NAPPLIRAIAKDAILSRCKIIAEPWDCR 489 (782)
Q Consensus 422 -p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~---------~~g~~~--~~~~~l~~i~~~~~~~~~~ligE~w~~~ 489 (782)
..=-+..++-++.-++ +.|++|+|.+-.+.+- ..|.+. ...+++..++-.+...++.+|||.-
T Consensus 426 ~~~gy~ww~~rlr~~~~--~~g~lRIDH~~Gl~rlW~IP~g~~a~~G~yv~~P~~~ll~~lales~~~~~~vIgEDL--- 500 (695)
T PRK11052 426 QARAYQPFIDLLRANMQ--HCGALRIDHVMSLLRLWWIPYGETADQGAYVHYPVDDLLAILALESQRHRCMVIGEDL--- 500 (695)
T ss_pred HhcCcHHHHHHHHHHHH--hCCEEEecchhhhheeeecCCCCCCCCCeeEeCCHHHHHHHHHHHHhcCCCCEEEeeC---
Confidence 0011234444555553 7899999965544221 113333 2235666665555667899999953
Q ss_pred CccccCCCCCcccchhhchhHHHHHHHHHhC--CCCch-hhHHHHhhcCccccccCCCCCcceEEEeeccCCCCchhhh
Q 003977 490 GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKG--DPGMK-GILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLV 565 (782)
Q Consensus 490 ~~~~~g~~~~~~~~~~~n~~f~~~i~~~~~g--~~~~~-~~~~~~l~~~~~~~~~~~~~p~~~vnfi~~HD~~tl~d~~ 565 (782)
|..+ ..++..+.. -.++. -.|.. .+. ..+.....-+..++.++.+||+.|+....
T Consensus 501 -----G~Vp-------------~~Vr~~l~~~gi~g~~Vl~Fe~--~~~-~~~~~P~~y~~~sva~t~THD~pTl~Gww 558 (695)
T PRK11052 501 -----GTVP-------------VEIVGKLRDSGVYSYKVLYFEN--DEE-GGFRAPAAYPEQSMATLTTHDLPTLRGYW 558 (695)
T ss_pred -----CCCC-------------HHHHHHHHHcCCCCcEEEEecc--cCC-CCCCCcccCcCCeEEECCCCCChhHHHHH
Confidence 2222 222222221 11211 01111 111 11112223356889999999999987654
No 94
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=93.75 E-value=0.36 Score=55.88 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecc
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYN 375 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~N 375 (782)
++++++-+.|+.+||++|-|+.+-
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~ 235 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVF 235 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcce
Confidence 567788888999999999999763
No 95
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=93.16 E-value=0.26 Score=51.82 Aligned_cols=62 Identities=23% Similarity=0.346 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHH
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 431 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~ 431 (782)
+++++.|+.+|++|+||++=+-.+|.+.. + ....+++-++.+.++
T Consensus 51 ~~~~~~i~~l~~kG~KVl~sigg~~~~~~---------~--------------------------~~~~~~~~~~~fa~~ 95 (255)
T cd06542 51 TNKETYIRPLQAKGTKVLLSILGNHLGAG---------F--------------------------ANNLSDAAAKAYAKA 95 (255)
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCCC---------c--------------------------cccCCHHHHHHHHHH
Confidence 78999999999999999999876664320 0 011235667777888
Q ss_pred HHHHHHhcCccEEEEcc
Q 003977 432 LRHWVVEYHVDGFRFDL 448 (782)
Q Consensus 432 l~~W~~e~gVDGFR~D~ 448 (782)
+.-+++.||+||+-+|-
T Consensus 96 l~~~v~~yglDGiDiD~ 112 (255)
T cd06542 96 IVDTVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHHHHhCCCceEEee
Confidence 88888899999999994
No 96
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=92.97 E-value=0.56 Score=51.39 Aligned_cols=73 Identities=15% Similarity=0.320 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhCCcEEEEee-ecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHH
Q 003977 352 WEFKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 430 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDv-V~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d 430 (782)
+|+|++|+-|.++||.||-.+ ++.|+.. |...++... .... ........||..+|++.+++.+
T Consensus 82 ~di~eiv~yA~~rgI~vIPEID~PGH~~a------~~~~~pel~------~~~~----~~~~~~~~l~~~~~~t~~f~~~ 145 (326)
T cd06564 82 EEFKELIAYAKDRGVNIIPEIDSPGHSLA------FTKAMPELG------LKNP----FSKYDKDTLDISNPEAVKFVKA 145 (326)
T ss_pred HHHHHHHHHHHHcCCeEeccCCCcHHHHH------HHHhhHHhc------CCCc----ccCCCcccccCCCHHHHHHHHH
Confidence 999999999999999999888 4889764 221111100 0000 1112245789999999999999
Q ss_pred HHHHHHHhcC
Q 003977 431 SLRHWVVEYH 440 (782)
Q Consensus 431 ~l~~W~~e~g 440 (782)
.+...++-|.
T Consensus 146 l~~E~~~~f~ 155 (326)
T cd06564 146 LFDEYLDGFN 155 (326)
T ss_pred HHHHHHHhcC
Confidence 9999996665
No 97
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=92.88 E-value=0.17 Score=54.48 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHH
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 431 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~ 431 (782)
-+.++||+++|++|++||+-+.+...... ..+.+..+. .+.... ...+...-+|+.||+.++...+.
T Consensus 74 Pdp~~mi~~Lh~~G~k~v~~v~P~~~~~~--~~~~y~~~~---------~~~~~~--~~~~~~~~~D~tnp~a~~~w~~~ 140 (292)
T cd06595 74 PDPEKLLQDLHDRGLKVTLNLHPADGIRA--HEDQYPEMA---------KALGVD--PATEGPILFDLTNPKFMDAYFDN 140 (292)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCCcccCC--CcHHHHHHH---------HhcCCC--cccCCeEEecCCCHHHHHHHHHH
Confidence 35799999999999999998876531110 001011110 000000 00111125789999999877777
Q ss_pred HHHHHHhcCccEEEEcc
Q 003977 432 LRHWVVEYHVDGFRFDL 448 (782)
Q Consensus 432 l~~W~~e~gVDGFR~D~ 448 (782)
+..-+.++|||||=.|.
T Consensus 141 ~~~~~~~~Gidg~W~D~ 157 (292)
T cd06595 141 VHRPLEKQGVDFWWLDW 157 (292)
T ss_pred HHHHHHhcCCcEEEecC
Confidence 66666689999999994
No 98
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=92.31 E-value=0.35 Score=59.52 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=79.2
Q ss_pred CHHHHHhhchHHHHcCC--cEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCC-CCCCCCCCCCchHHHHHH
Q 003977 280 SYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFKE 356 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~-~yGt~~~~p~~~~~elk~ 356 (782)
+-..+.+-++.+++.|| ++|||=-=+ .. ||.. |..|+ +| -+.++
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDidY-----------------m~--g~~~---FTwD~~rF-----------PdP~~ 245 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDIDY-----------------MD--GFRC---FTFDKERF-----------PDPKG 245 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEehhh-----------------hc--CCCc---eeECcccC-----------CCHHH
Confidence 45667777888888887 567653100 01 2222 33333 44 24689
Q ss_pred HHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCcc---CcCCCCCCCCCCCHHHHHHHHHHHH
Q 003977 357 MVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELILDSLR 433 (782)
Q Consensus 357 LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~---~~~~~~~~ln~~~p~v~~~i~d~l~ 433 (782)
||+++|++|++||+=+.+ ++.. +..+. .++......+|..+.+|... .|.|...-.||.||++|++..+.++
T Consensus 246 mv~~Lh~~G~kvv~iidP-gI~~---d~gY~-~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k 320 (978)
T PLN02763 246 LADDLHSIGFKAIWMLDP-GIKA---EEGYF-VYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVK 320 (978)
T ss_pred HHHHHHHCCCEEEEEEcC-CCcc---CCCCH-HHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHH
Confidence 999999999999765433 2221 11121 22211123455555544321 1222223468999999999999999
Q ss_pred HHHHhcCccEEEEccc
Q 003977 434 HWVVEYHVDGFRFDLA 449 (782)
Q Consensus 434 ~W~~e~gVDGFR~D~a 449 (782)
.++ +.|||||=+|.-
T Consensus 321 ~l~-d~GVDG~W~Dmn 335 (978)
T PLN02763 321 DFV-SNGVDGIWNDMN 335 (978)
T ss_pred HHh-cCCCcEEEccCC
Confidence 888 689999999963
No 99
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=92.12 E-value=0.23 Score=57.51 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecc
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYN 375 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~N 375 (782)
++++++.+.|+++||++|.|+.+-
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpig 215 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIG 215 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEeccce
Confidence 678888899999999999999753
No 100
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=91.87 E-value=5.2 Score=51.44 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=27.7
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCcccc
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEF 307 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~ 307 (782)
|||..+.+-++.+++.|.+.|+|+|++..
T Consensus 743 GDf~dl~~~vd~~a~~G~~~~qilPl~~~ 771 (1221)
T PRK14510 743 GDFEELYALVDFLAEGGQSLWGVNPLHPL 771 (1221)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 99999999999999999999999999885
No 101
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=91.74 E-value=0.17 Score=55.84 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=39.9
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
.++....+-|.-.+++|++.|+.. ++- | +. ++..-.++|++|+
T Consensus 11 ~~~~~~~~yi~~a~~~Gf~~iFTS-L~i-----------p------------------e~-------~~~~~~~~~~~l~ 53 (357)
T PF05913_consen 11 SSFEENKAYIEKAAKYGFKRIFTS-LHI-----------P------------------ED-------DPEDYLERLKELL 53 (357)
T ss_dssp S-HHHHHHHHHHHHCTTEEEEEEE-E---------------------------------------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEECC-CCc-----------C------------------CC-------CHHHHHHHHHHHH
Confidence 356667777777788999999864 111 1 00 0112248999999
Q ss_pred HHHhhCCcEEEEeeeccc
Q 003977 359 KALHGAGIEVILDVVYNH 376 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV~NH 376 (782)
+.||+.||+||+||-+.-
T Consensus 54 ~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 54 KLAKELGMEVIADISPKV 71 (357)
T ss_dssp HHHHHCT-EEEEEE-CCH
T ss_pred HHHHHCCCEEEEECCHHH
Confidence 999999999999996544
No 102
>PLN03244 alpha-amylase; Provisional
Probab=90.88 E-value=0.15 Score=60.58 Aligned_cols=74 Identities=14% Similarity=0.240 Sum_probs=53.8
Q ss_pred cccccccCCcccCCCCCCCCccEEeC-CcEEEEEEcCCCCeEEEEEEeCCCccccCCCC--CceeeeCCCCCCCCCCEEE
Q 003977 93 PRVSETTLPLKTSQGQAFPIGVSEVE-NGINFAIFSQHATAVTLCLSLPKREKLDWQDG--GMIELPLDPRVNKTGDIWH 169 (782)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~lGa~~~~-~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~--~~~~~~l~~~~~~~G~vW~ 169 (782)
..+.+-.-.++.++-..+.||.|... .++.|+.|||.|.-++|++++|+ |+.. ..++--|. .++.| +|+
T Consensus 104 ~~~~~~~~~~~~~~~~~e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~-----w~~~~~~~r~~~~~--~~~~g-~~~ 175 (872)
T PLN03244 104 DEIFKRHFDFQDFASGFEILGMHRHMEHRVDFMDWAPGARYCAIIGDFNG-----WSPTENAAREGHFG--HDDYG-YWF 175 (872)
T ss_pred HHHHHhhccHHHhhhhhhhhccccCcccCceeEeecCCcceeeeeccccC-----CCcccccccccccc--ccccc-eEE
Confidence 33434344566666777889999977 59999999999999999999984 6543 22222342 35677 999
Q ss_pred EEEeC
Q 003977 170 ICIED 174 (782)
Q Consensus 170 ~~v~~ 174 (782)
|.+++
T Consensus 176 ~~~~~ 180 (872)
T PLN03244 176 IILED 180 (872)
T ss_pred EEech
Confidence 99986
No 103
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=90.76 E-value=0.81 Score=44.90 Aligned_cols=71 Identities=8% Similarity=0.108 Sum_probs=46.9
Q ss_pred HHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 003977 281 YLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 360 (782)
Q Consensus 281 ~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~ 360 (782)
-....+.+.+++++||++|.|.=. . ....-+-|..++ .+.+-.. ..+-+..++++
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq~~--~---------------~~~~~~yps~~~--~~~~~~~------~~d~l~~~L~~ 73 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQWT--G---------------YGGFAFYPSKLS--PGGFYMP------PVDLLEMILDA 73 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEe--e---------------cCCcccCCcccc--CccccCC------cccHHHHHHHH
Confidence 345567899999999999998721 1 111122334431 1222221 12779999999
Q ss_pred HhhCCcEEEEeeeccc
Q 003977 361 LHGAGIEVILDVVYNH 376 (782)
Q Consensus 361 ~H~~Gi~VIlDvV~NH 376 (782)
|.+.||+|++-+-++.
T Consensus 74 A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 74 ADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHcCCEEEEeCCCCc
Confidence 9999999999987765
No 104
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=89.83 E-value=0.34 Score=51.27 Aligned_cols=63 Identities=27% Similarity=0.293 Sum_probs=41.4
Q ss_pred HHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHh
Q 003977 283 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 362 (782)
Q Consensus 283 gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H 362 (782)
-..+.++.|+++|+|+|=|.-..+. +. .+++.+-. .....+.|+++|++|+
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~--------------------~~-----~~~~~~~~----~~~~~~~ld~~v~~a~ 72 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEA--------------------YQ-----EPNPGYNY----DETYLARLDRIVDAAQ 72 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTS--------------------TS-----TTSTTTSB----THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHH--------------------hc-----CCCCCccc----cHHHHHHHHHHHHHHH
Confidence 3445699999999999998654322 11 11111100 0134588999999999
Q ss_pred hCCcEEEEeeec
Q 003977 363 GAGIEVILDVVY 374 (782)
Q Consensus 363 ~~Gi~VIlDvV~ 374 (782)
++||+||+|+--
T Consensus 73 ~~gi~vild~h~ 84 (281)
T PF00150_consen 73 AYGIYVILDLHN 84 (281)
T ss_dssp HTT-EEEEEEEE
T ss_pred hCCCeEEEEecc
Confidence 999999999854
No 105
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=89.56 E-value=0.68 Score=51.37 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=42.7
Q ss_pred HHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHH
Q 003977 355 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRH 434 (782)
Q Consensus 355 k~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~ 434 (782)
++||..||++|++|++..-+. + -...+|..|+.+++++.-
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~--------------~--------------------------~~l~~~~~R~~fi~siv~ 106 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVP--------------L--------------------------EQISNPTYRTQWIQQKVE 106 (358)
T ss_pred HHHHHHHHHcCCEEEEECccC--------------H--------------------------HHcCCHHHHHHHHHHHHH
Confidence 478899999999999741000 0 013468899999999999
Q ss_pred HHHhcCccEEEEccc
Q 003977 435 WVVEYHVDGFRFDLA 449 (782)
Q Consensus 435 W~~e~gVDGFR~D~a 449 (782)
+++++|.||+-+|--
T Consensus 107 ~~~~~gfDGIdIDwE 121 (358)
T cd02875 107 LAKSQFMDGINIDIE 121 (358)
T ss_pred HHHHhCCCeEEEccc
Confidence 999999999999943
No 106
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=89.39 E-value=3.9 Score=47.08 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhCCcEEEEeeeccc
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYNH 376 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~NH 376 (782)
+++.++=.-|+++||.+|.|+.+.=
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~v 234 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGV 234 (520)
T ss_pred HHHHHHHHHHHhcCceEeeccccee
Confidence 4556666677889999999997654
No 107
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=89.33 E-value=1.8 Score=48.35 Aligned_cols=123 Identities=18% Similarity=0.188 Sum_probs=69.3
Q ss_pred HHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 003977 282 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 361 (782)
Q Consensus 282 ~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~ 361 (782)
..+.+.|.-+|++|||+|-|..+.-. .. .|.+ + ..|| +.|.++|+.|
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~-~l----EP~e-----G-----~ydF------------------~~lD~~l~~a 56 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWS-WL----EPEE-----G-----QYDF------------------SWLDRVLDLA 56 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHH-HH-----SBT-----T-----B---------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechh-hc----cCCC-----C-----eeec------------------HHHHHHHHHH
Confidence 34556789999999999998776322 00 1212 0 0133 7799999999
Q ss_pred hhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-
Q 003977 362 HGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYH- 440 (782)
Q Consensus 362 H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~g- 440 (782)
+++||+|||-+. .++. ..|+.. ..+.--..+.+|....+ +.....+..+|.+|+++...++..++.|+
T Consensus 57 ~~~Gi~viL~~~-~~~~-----P~Wl~~----~~Pe~~~~~~~g~~~~~-g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~ 125 (374)
T PF02449_consen 57 AKHGIKVILGTP-TAAP-----PAWLYD----KYPEILPVDADGRRRGF-GSRQHYCPNSPAYREYARRFIRALAERYGD 125 (374)
T ss_dssp HCTT-EEEEEEC-TTTS------HHHHC----CSGCCC-B-TTTSBEEC-CCSTT-HCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCeEEEEec-cccc-----ccchhh----hcccccccCCCCCcCcc-CCccccchhHHHHHHHHHHHHHHHHhhccc
Confidence 999999999775 2222 123311 01111122333333222 22234567889999998888776666554
Q ss_pred ---ccEEEEcc
Q 003977 441 ---VDGFRFDL 448 (782)
Q Consensus 441 ---VDGFR~D~ 448 (782)
|-|+-+|.
T Consensus 126 ~p~vi~~~i~N 136 (374)
T PF02449_consen 126 HPAVIGWQIDN 136 (374)
T ss_dssp TTTEEEEEECC
T ss_pred cceEEEEEecc
Confidence 77888874
No 108
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=89.13 E-value=1.3 Score=48.15 Aligned_cols=60 Identities=30% Similarity=0.498 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHH
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 431 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~ 431 (782)
.++++-|++||++|++|++-+ +. ... .....++.-++.+.++
T Consensus 60 ~~~~~~i~~~q~~G~KVllSi-----GG--~~~-------------------------------~~~~~~~~~~~~fa~s 101 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISI-----GG--ANG-------------------------------HVDLNHTAQEDNFVDS 101 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEE-----eC--CCC-------------------------------ccccCCHHHHHHHHHH
Confidence 789999999999999999875 11 000 0012356778889999
Q ss_pred HHHHHHhcCccEEEEccc
Q 003977 432 LRHWVVEYHVDGFRFDLA 449 (782)
Q Consensus 432 l~~W~~e~gVDGFR~D~a 449 (782)
+..++++||+||+=||.-
T Consensus 102 l~~~~~~~g~DGiDiD~E 119 (312)
T cd02871 102 IVAIIKEYGFDGLDIDLE 119 (312)
T ss_pred HHHHHHHhCCCeEEEecc
Confidence 999999999999999954
No 109
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=88.71 E-value=2.6 Score=45.61 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=71.9
Q ss_pred CHHHHHhhchHHHHcCCcEEEECCc--cccchhhhhhcCCCCCCCCCcCCCCCCCCCCC-CCCCCCCCCCCCchHHHHHH
Q 003977 280 SYLGLIQKIPHLLELGINAVELLPV--FEFDEMEFQRRRNPRDHMVNTWGYSTINFFSP-MSRYAAGGGGPLKASWEFKE 356 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGvt~I~L~Pi--~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~-d~~yGt~~~~p~~~~~elk~ 356 (782)
+...|.+.|+.++.+|+|.++|-=- |++ + |+- .... ...| |. +|+++
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~----------~--------~~p---~~~~~~~~y-T~--------~ei~e 64 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPY----------E--------GEP---EVGRMRGAY-TK--------EEIRE 64 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceec----------C--------CCc---ccccCCCCc-CH--------HHHHH
Confidence 4566777899999999999987321 111 0 110 0000 1223 33 99999
Q ss_pred HHHHHhhCCcEEEEee-ecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003977 357 MVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHW 435 (782)
Q Consensus 357 LV~~~H~~Gi~VIlDv-V~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W 435 (782)
+++-|.++||+||-.+ ++.|+.. +. .. +.|-...+. ......||-.+|++.++|.+.+...
T Consensus 65 i~~yA~~~gI~vIPeid~pGH~~~------~l-~~-----~~~~~l~~~------~~~~~~l~~~~~~t~~fi~~li~ev 126 (301)
T cd06565 65 IDDYAAELGIEVIPLIQTLGHLEF------IL-KH-----PEFRHLREV------DDPPQTLCPGEPKTYDFIEEMIRQV 126 (301)
T ss_pred HHHHHHHcCCEEEecCCCHHHHHH------HH-hC-----ccccccccc------CCCCCccCCCChhHHHHHHHHHHHH
Confidence 9999999999999777 3888764 11 11 111111111 0113468999999999999999999
Q ss_pred HHhcC
Q 003977 436 VVEYH 440 (782)
Q Consensus 436 ~~e~g 440 (782)
+.-|.
T Consensus 127 ~~~f~ 131 (301)
T cd06565 127 LELHP 131 (301)
T ss_pred HHhCC
Confidence 96544
No 110
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=88.66 E-value=15 Score=47.19 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChH-HHHHHHhccccCCceEEecccCC
Q 003977 420 NHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP-LIRAIAKDAILSRCKIIAEPWDC 488 (782)
Q Consensus 420 ~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~-~l~~i~~~~~~~~~~ligE~w~~ 488 (782)
.+|.++++|.+..+.-.+ -++|||+|.++--+.. ..+ ++.+. ..+.|+++++||-+..
T Consensus 487 DsP~LW~~M~~Y~~~~Ak--iF~G~RiDNCHSTPlh-------VaeylLd~A--R~vnPnLyV~AELFTG 545 (1464)
T TIGR01531 487 DSPYLWQHMKEYTEMTAR--IFDGVRIDNCHSTPIH-------VAEYLLDAA--RKYNPNLYVVAELFTG 545 (1464)
T ss_pred CCHHHHHHHHHHHHHHHH--hhcceeeecccCCcHH-------HHHHHHHHH--hhcCCCeEEEeeecCC
Confidence 469999999999998886 6899999976554322 222 33333 2589999999997644
No 111
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=87.98 E-value=1.3 Score=48.62 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHH
Q 003977 353 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSL 432 (782)
Q Consensus 353 elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l 432 (782)
+.++||+++|++|++||+-+.+-= .. +. . +.+.+.-.|+.||++|++-.+.+
T Consensus 65 dp~~mv~~L~~~G~klv~~i~P~i-~~------------g~---~------------~~~~~~~pDftnp~ar~wW~~~~ 116 (332)
T cd06601 65 NPKEMFDNLHNKGLKCSTNITPVI-SY------------GG---G------------LGSPGLYPDLGRPDVREWWGNQY 116 (332)
T ss_pred CHHHHHHHHHHCCCeEEEEecCce-ec------------Cc---c------------CCCCceeeCCCCHHHHHHHHHHH
Confidence 368899999999999988775321 10 00 0 00112235788999999998888
Q ss_pred HHHHHhcCccEEEEccc
Q 003977 433 RHWVVEYHVDGFRFDLA 449 (782)
Q Consensus 433 ~~W~~e~gVDGFR~D~a 449 (782)
+.+. +.|||||=+|..
T Consensus 117 ~~l~-~~Gv~~~W~Dmn 132 (332)
T cd06601 117 KYLF-DIGLEFVWQDMT 132 (332)
T ss_pred HHHH-hCCCceeecCCC
Confidence 8887 689999999953
No 112
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=87.82 E-value=0.59 Score=49.95 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhCCcEEEEeeeccc
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYNH 376 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~NH 376 (782)
.-|++|++.||+.||+||+||-+.-
T Consensus 49 ~~~~ell~~Anklg~~vivDvnPsi 73 (360)
T COG3589 49 HRFKELLKEANKLGLRVIVDVNPSI 73 (360)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 6699999999999999999997654
No 113
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=87.68 E-value=3 Score=49.90 Aligned_cols=133 Identities=19% Similarity=0.257 Sum_probs=76.8
Q ss_pred CCHHHHHhhchHHHHcCCc--EEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGIN--AVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKE 356 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt--~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~ 356 (782)
+++..+.+..+..+++||. ++| .|.+.. . + -.||..=...|+ .++.
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~------~DiDyM----------d---~--ykDFTvd~~~fp-----------~~~~ 355 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIV------IDIDYM----------D---G--YKDFTVDKVWFP-----------DLKD 355 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceee------eehhhh----------h---c--ccceeeccccCc-----------chHH
Confidence 6778888888889999884 333 111100 0 1 133322222232 2899
Q ss_pred HHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCc---cC-cCCCCCCCCCCCHHHHHHHHHHH
Q 003977 357 MVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL---LN-YAGCGNTLNCNHPVVMELILDSL 432 (782)
Q Consensus 357 LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~---~~-~~~~~~~ln~~~p~v~~~i~d~l 432 (782)
+|+.+|++|+++|+=+-++-... . . +..++.......+..+..|.. .+ +.+...-+|+.||.+.....+.+
T Consensus 356 fv~~Lh~~G~kyvliidP~is~~---~-~-y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~ 430 (805)
T KOG1065|consen 356 FVDDLHARGFKYVLIIDPFISTN---S-S-YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDEL 430 (805)
T ss_pred HHHHHHhCCCeEEEEeCCccccC---c-c-chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHH
Confidence 99999999999986554322111 1 1 111222211223333322222 11 11112236889999999999999
Q ss_pred HHHHHhcCccEEEEcc
Q 003977 433 RHWVVEYHVDGFRFDL 448 (782)
Q Consensus 433 ~~W~~e~gVDGFR~D~ 448 (782)
+..-+++++|||=+|+
T Consensus 431 ~~fh~~vp~dg~wiDm 446 (805)
T KOG1065|consen 431 KRFHDEVPFDGFWIDM 446 (805)
T ss_pred HhhcccCCccceEEEC
Confidence 8888899999999996
No 114
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=87.51 E-value=1.5 Score=46.02 Aligned_cols=62 Identities=23% Similarity=0.470 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHH
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 431 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~ 431 (782)
.++..++++||++|++|++=|- ++... . + .. -..++..|+.++++
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sig-g~~~~-----~-~--------------------------~~--~~~~~~~r~~fi~~ 90 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLA-GGSPP-----E-F--------------------------TA--ALNDPAKRKALVDK 90 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEc-CCCCC-----c-c--------------------------hh--hhcCHHHHHHHHHH
Confidence 6788999999999999998542 22110 0 0 00 23568899999999
Q ss_pred HHHHHHhcCccEEEEcc
Q 003977 432 LRHWVVEYHVDGFRFDL 448 (782)
Q Consensus 432 l~~W~~e~gVDGFR~D~ 448 (782)
+.-++++||+||+-+|.
T Consensus 91 lv~~~~~~~~DGIdiDw 107 (253)
T cd06545 91 IINYVVSYNLDGIDVDL 107 (253)
T ss_pred HHHHHHHhCCCceeEEe
Confidence 99999999999999995
No 115
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=87.46 E-value=2.2 Score=45.17 Aligned_cols=94 Identities=20% Similarity=0.284 Sum_probs=61.9
Q ss_pred CCHHHHHhhchHHHHcCC--cEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCC-CCCCCCCCCCchHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGI--NAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS-RYAAGGGGPLKASWEFK 355 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGv--t~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~-~yGt~~~~p~~~~~elk 355 (782)
.+-..+.+.++.+++.|| ++|+|-.-+... .+.++ +..++ +| -+.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~--------------~~~f~------~~~d~~~F-----------pdp~ 69 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG--------------YGDFT------FDWDAGKF-----------PNPK 69 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccC--------------Cceee------eecChhhC-----------CCHH
Confidence 567778888999988776 577765433220 11111 12222 33 3478
Q ss_pred HHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003977 356 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHW 435 (782)
Q Consensus 356 ~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W 435 (782)
+||+.+|++|++|++-+.+ .|++...+.++..
T Consensus 70 ~~i~~l~~~g~~~~~~~~P------------------------------------------------~v~~w~~~~~~~~ 101 (265)
T cd06589 70 SMIDELHDNGVKLVLWIDP------------------------------------------------YIREWWAEVVKKL 101 (265)
T ss_pred HHHHHHHHCCCEEEEEeCh------------------------------------------------hHHHHHHHHHHHh
Confidence 9999999999999986632 1255666666665
Q ss_pred HHhcCccEEEEccccc
Q 003977 436 VVEYHVDGFRFDLASV 451 (782)
Q Consensus 436 ~~e~gVDGFR~D~a~~ 451 (782)
+.++|||||=+|....
T Consensus 102 ~~~~Gvdg~w~D~~E~ 117 (265)
T cd06589 102 LVSLGVDGFWTDMGEP 117 (265)
T ss_pred hccCCCCEEeccCCCC
Confidence 5589999999996543
No 116
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=87.21 E-value=3.7 Score=45.55 Aligned_cols=79 Identities=20% Similarity=0.147 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhCCcEEEEee-ecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHH
Q 003977 352 WEFKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 430 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDv-V~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d 430 (782)
+|++++|+-|.++||+||-.+ ++.|+...-...|.+.. ......+ ........+.||..+|++.+++.+
T Consensus 86 ~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~---~~~~~~~-------~~~~~~~~~~L~~~~~~t~~f~~~ 155 (357)
T cd06563 86 EEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGC---TGGPGSV-------VSVQGVVSNVLCPGKPETYTFLED 155 (357)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccC---CCCCCcc-------ccccCcCCCccCCCChhHHHHHHH
Confidence 999999999999999999888 48998642111111100 0000000 000111235689999999999999
Q ss_pred HHHHHHHhcC
Q 003977 431 SLRHWVVEYH 440 (782)
Q Consensus 431 ~l~~W~~e~g 440 (782)
.+.-.++-|.
T Consensus 156 ll~E~~~lF~ 165 (357)
T cd06563 156 VLDEVAELFP 165 (357)
T ss_pred HHHHHHHhCC
Confidence 9999986554
No 117
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=87.14 E-value=3.7 Score=45.00 Aligned_cols=124 Identities=20% Similarity=0.237 Sum_probs=73.3
Q ss_pred CHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCC-------------CCCCCCCCCCCC
Q 003977 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFF-------------SPMSRYAAGGGG 346 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~-------------a~d~~yGt~~~~ 346 (782)
+...|.+.||.+...++|.++|--.=+ ..|.+....|= .....| |.
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~-----------------~~~rle~~~~P~lt~~ga~~~~~~~~~~~Y-T~--- 74 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDD-----------------QGWRIEIKSWPKLTEIGGSTEVGGGPGGYY-TQ--- 74 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecC-----------------CcceeeecCcccccccccccccCCCCCCcC-CH---
Confidence 566777778999999999998843210 11111111110 111122 33
Q ss_pred CCchHHHHHHHHHHHhhCCcEEEEeee-cccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHH
Q 003977 347 PLKASWEFKEMVKALHGAGIEVILDVV-YNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 425 (782)
Q Consensus 347 p~~~~~elk~LV~~~H~~Gi~VIlDvV-~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~ 425 (782)
+|+++||+-|.++||.||-.+- +.|+.......|-+.. .+. ....| .........||..+|++.
T Consensus 75 -----~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~-~~~-~~~~~--------~~~~~~~~~l~~~~~~t~ 139 (329)
T cd06568 75 -----EDYKDIVAYAAERHITVVPEIDMPGHTNAALAAYPELNC-DGK-AKPLY--------TGIEVGFSSLDVDKPTTY 139 (329)
T ss_pred -----HHHHHHHHHHHHcCCEEEEecCCcHHHHHHHHhChhhcc-CCC-CCccc--------cccCCCCcccCCCCHHHH
Confidence 9999999999999999998884 8887641111111100 000 00000 011111257899999999
Q ss_pred HHHHHHHHHHHHhc
Q 003977 426 ELILDSLRHWVVEY 439 (782)
Q Consensus 426 ~~i~d~l~~W~~e~ 439 (782)
+++.+.+...++-|
T Consensus 140 ~fl~~v~~E~~~~f 153 (329)
T cd06568 140 EFVDDVFRELAALT 153 (329)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988544
No 118
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=87.13 E-value=3.5 Score=44.66 Aligned_cols=122 Identities=20% Similarity=0.268 Sum_probs=74.0
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCC------------CCCCCCCCCCCCCC
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTIN------------FFSPMSRYAAGGGG 346 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~d------------y~a~d~~yGt~~~~ 346 (782)
=+...|.+-||.+..+++|.++|-=. +. ..|.+.... .+.....| |.
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~-D~----------------~~~~le~~~~p~l~~~g~~~~~~~~~~~y-T~--- 71 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLT-DD----------------QAWRIESKKFPELAEKGGQINPRSPGGFY-TY--- 71 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeee-cC----------------CCceEeeCccchhhhhcccccCCCCCCeE-CH---
Confidence 35667777799999999999886421 00 011111111 11222222 32
Q ss_pred CCchHHHHHHHHHHHhhCCcEEEEee-ecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHH
Q 003977 347 PLKASWEFKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVM 425 (782)
Q Consensus 347 p~~~~~elk~LV~~~H~~Gi~VIlDv-V~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~ 425 (782)
+|+++||+-|.++||+||-.+ ++.|+.. +...+.......+ .+ ..+......||..+|++.
T Consensus 72 -----~di~elv~yA~~rgI~viPEiD~PGH~~a------~~~~~p~l~~~~~-----~~--~~~~~~~~~l~~~~~~t~ 133 (303)
T cd02742 72 -----AQLKDIIEYAAARGIEVIPEIDMPGHSTA------FVKSFPKLLTECY-----AG--LKLRDVFDPLDPTLPKGY 133 (303)
T ss_pred -----HHHHHHHHHHHHcCCEEEEeccchHHHHH------HHHhCHHhccCcc-----cc--CCCCCCCCccCCCCccHH
Confidence 999999999999999999998 4899864 2211111100000 00 011111346899999999
Q ss_pred HHHHHHHHHHHHhc
Q 003977 426 ELILDSLRHWVVEY 439 (782)
Q Consensus 426 ~~i~d~l~~W~~e~ 439 (782)
+++.+.+..++.-|
T Consensus 134 ~fl~~l~~e~~~lf 147 (303)
T cd02742 134 DFLDDLFGEIAELF 147 (303)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999644
No 119
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=86.44 E-value=3.7 Score=45.41 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=74.5
Q ss_pred CHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCC--------CCCCCCCCCCCCCCCchH
Q 003977 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINF--------FSPMSRYAAGGGGPLKAS 351 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy--------~a~d~~yGt~~~~p~~~~ 351 (782)
+...|.+.||.+..+++|.++|== .|+ ..|.+....| +.+...| |.
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hl---tDd--------------~~~rle~~~~P~Lt~~ga~~~~~~Y-T~-------- 69 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHI---TDS--------------QSFPLESPSYPELSKKGAYSPSEVY-TP-------- 69 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeE---EcC--------------CCceEeeCCCchhhhccCcCCCceE-CH--------
Confidence 456677778999999999988631 000 1112211111 1122223 44
Q ss_pred HHHHHHHHHHhhCCcEEEEee-ecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHH
Q 003977 352 WEFKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 430 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDv-V~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d 430 (782)
+|+++||+-|.++||.||-.+ ++.|+.......|.+ ......+ +. .+ ....+...||..+|++.+++.+
T Consensus 70 ~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p~l----~~~~~~~--~~---~~-~~~~~~~~L~~~~~~t~~fl~~ 139 (348)
T cd06562 70 EDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYPEL----LTGCYAV--WR---KY-CPEPPCGQLNPTNPKTYDFLKT 139 (348)
T ss_pred HHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhChhh----hCCCCcc--cc---cc-ccCCCCccccCCChhHHHHHHH
Confidence 999999999999999999998 489986521111111 0000000 00 00 0011234689999999999999
Q ss_pred HHHHHHHhcC
Q 003977 431 SLRHWVVEYH 440 (782)
Q Consensus 431 ~l~~W~~e~g 440 (782)
.+...++-|.
T Consensus 140 vl~E~~~lF~ 149 (348)
T cd06562 140 LFKEVSELFP 149 (348)
T ss_pred HHHHHHHhcC
Confidence 9999997555
No 120
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=86.01 E-value=0.96 Score=49.89 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=73.2
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCC-----------CCCCCCCCCCC
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSP-----------MSRYAAGGGGP 347 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~-----------d~~yGt~~~~p 347 (782)
=+...|.+-|+.+..+++|+++|=---. ..|.+....|=.+ +..| |.
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~-----------------~~~~~~~~~~p~l~~~ga~~~~~~~~~y-T~---- 72 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDD-----------------QGFRLESKSYPELTEKGAYRPSDAGGYY-TK---- 72 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESS-----------------TCB-BEBSTSTHHHHTTTESTTCTESEB-EH----
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecC-----------------CCCccccCCCccccccCccccccccccC-CH----
Confidence 3567777889999999999998743111 0111111111000 1122 33
Q ss_pred CchHHHHHHHHHHHhhCCcEEEEee-ecccccCCCCCCCccccccCCC------CCcceeeCCCCCccCcCCCCCCCCCC
Q 003977 348 LKASWEFKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRGID------NKVYYMVDGTGQLLNYAGCGNTLNCN 420 (782)
Q Consensus 348 ~~~~~elk~LV~~~H~~Gi~VIlDv-V~NH~~~~~~~~~~~~~~~~~~------~~~yy~~d~~g~~~~~~~~~~~ln~~ 420 (782)
+|+++||+-|+++||+||-.+ ++.|+.. +........ +..++.... .......||..
T Consensus 73 ----~di~~lv~yA~~~gI~VIPeid~PGH~~~------~l~~~p~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~ 136 (351)
T PF00728_consen 73 ----EDIRELVAYAKERGIEVIPEIDTPGHAEA------WLKAYPELGCSAWPEDKSWPNSTC------WYPDNGVLDPS 136 (351)
T ss_dssp ----HHHHHHHHHHHHTT-EEEEEEEESSS-HH------HHHHHHHHCCCHTTCSSSCEEEET------TSEEEEEE-TT
T ss_pred ----HHHHHHHHHHHHcCCceeeeccCchHHHH------HHHhCchhhccccccccccccccc------cCCCcccCCCC
Confidence 999999999999999999998 4899875 221111000 011111100 00011368899
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEE
Q 003977 421 HPVVMELILDSLRHWVVEYHVDGFRF 446 (782)
Q Consensus 421 ~p~v~~~i~d~l~~W~~e~gVDGFR~ 446 (782)
+|++.+++.+.+...+.-+.-.-|.+
T Consensus 137 ~~~t~~~~~~l~~e~~~~f~~~~iHi 162 (351)
T PF00728_consen 137 NPETYEFLKDLLDEVADLFPSKYIHI 162 (351)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSSEEEE
T ss_pred cHHHHHHHHHHHHHHHhhCCCCeEEe
Confidence 99999999999999997666444443
No 121
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=85.67 E-value=3.3 Score=37.53 Aligned_cols=67 Identities=18% Similarity=0.332 Sum_probs=41.6
Q ss_pred CCccEEeCCcEEEEEEcCC--CCeEEEEEEeCCCccccCCCCCceeeeCCCCCCC-CCCEEEEEEeCCCCCCceEEEEEe
Q 003977 111 PIGVSEVENGINFAIFSQH--ATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNK-TGDIWHICIEDLPRSEVLYGYRVD 187 (782)
Q Consensus 111 ~lGa~~~~~g~~F~vwaP~--a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~G~vW~~~v~~~~~~g~~Y~y~i~ 187 (782)
|+|| +.++++|+++. .++|.|++..+. ++ .....++|...... ..++|++.|+- ...-..|.|+|.
T Consensus 12 p~ga----~~v~irlr~~~~~v~~v~l~~~~~~-----~~-~~~~~~~M~~~~~~~~~~~~~~~i~~-~~~~~~Y~F~l~ 80 (116)
T cd02857 12 PYGA----DTLHIRLRTKKGDVAKVYLRYGDPY-----DK-GEEEEVPMRKDGSDELFDYWEATLPP-PTGRLRYYFELV 80 (116)
T ss_pred EcCC----CEEEEEEEecCCCccEEEEEEECCC-----CC-CCceEEEEEEeeeCCceeEEEEEEec-CCcEEEEEEEEE
Confidence 7887 78999999886 467777776442 00 11235566432222 12589999973 334567888885
Q ss_pred c
Q 003977 188 G 188 (782)
Q Consensus 188 ~ 188 (782)
.
T Consensus 81 ~ 81 (116)
T cd02857 81 D 81 (116)
T ss_pred c
Confidence 4
No 122
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=85.50 E-value=5.4 Score=43.63 Aligned_cols=56 Identities=29% Similarity=0.422 Sum_probs=37.4
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
+-++.||+.|+|+|=|=--.+ | |+ .-+.+. +...+|.++++++|
T Consensus 28 d~~~ilk~~G~N~vRlRvwv~-----------P---------~~--------~g~~~~--------~~~~~~akrak~~G 71 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVWVN-----------P---------YD--------GGYNDL--------EDVIALAKRAKAAG 71 (332)
T ss_dssp -HHHHHHHTT--EEEEEE-SS---------------------TT--------TTTTSH--------HHHHHHHHHHHHTT
T ss_pred CHHHHHHhcCCCeEEEEeccC-----------C---------cc--------cccCCH--------HHHHHHHHHHHHCC
Confidence 458999999999998764322 2 11 222332 89999999999999
Q ss_pred cEEEEeeecccc
Q 003977 366 IEVILDVVYNHT 377 (782)
Q Consensus 366 i~VIlDvV~NH~ 377 (782)
|+|+||+=|..+
T Consensus 72 m~vlldfHYSD~ 83 (332)
T PF07745_consen 72 MKVLLDFHYSDF 83 (332)
T ss_dssp -EEEEEE-SSSS
T ss_pred CeEEEeecccCC
Confidence 999999977654
No 123
>PRK12568 glycogen branching enzyme; Provisional
Probab=84.16 E-value=2.7 Score=50.58 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=49.8
Q ss_pred CCccEEeCCc-EEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEecC
Q 003977 111 PIGVSEVENG-INFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDGP 189 (782)
Q Consensus 111 ~lGa~~~~~g-~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~~~ 189 (782)
-||+|..++| +.+|+|-|.|.+|+|+.- .+ .. ..+|.+ ....| +|.+.+|. . ..|++++.-.
T Consensus 29 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-~~--------~~--~~~~~~-~~~~g-~f~~~~~~-~---~~y~~~~~~~ 91 (730)
T PRK12568 29 VLGPHPQADGRRQVRVLAPGAEAMGLIDG-RG--------KL--LARMQA-SPIDG-VFEGILPA-D---GPYRLRIVWP 91 (730)
T ss_pred hcCCcCCCCCcEEEEEECCCCcEEEEEec-CC--------cc--ccccEe-cCCCC-eEEEecCC-C---CCEEEEEEeC
Confidence 3999988888 699999999999999632 11 00 113432 23456 99998884 2 2388888632
Q ss_pred CCCCCCccccCceeeeCccccc
Q 003977 190 RDWHQGHRFDSSIVLIDPYAKL 211 (782)
Q Consensus 190 ~~~~~~~~~~~~~~~~DPyA~~ 211 (782)
. + ...+.|||+..
T Consensus 92 ~----~-----~~~~~dpy~~~ 104 (730)
T PRK12568 92 D----V-----VQEIEDPYAFA 104 (730)
T ss_pred C----c-----eEEeecccccc
Confidence 1 1 23678999965
No 124
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=82.29 E-value=12 Score=40.77 Aligned_cols=123 Identities=9% Similarity=0.132 Sum_probs=72.9
Q ss_pred CHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCC------CCCCCCCCCCCCchHHH
Q 003977 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSP------MSRYAAGGGGPLKASWE 353 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~------d~~yGt~~~~p~~~~~e 353 (782)
+...|.+.||.+..+++|.++|-=. +. ..|.+....|=.+ ...| |. +|
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hlt-Dd----------------~~~rle~~~~P~lt~~g~~~~~y-T~--------~d 69 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHLT-DD----------------QGFRIESKKYPKLQQKASDGLYY-TQ--------EQ 69 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEEe-cC----------------CCceeecCCCccccccCCCCCcc-CH--------HH
Confidence 4566777789999999998776310 00 1122222221110 1122 33 99
Q ss_pred HHHHHHHHhhCCcEEEEee-ecccccCCCCCCCccccccCCCCCcceeeCCCCCcc-CcCCCCCCCCCCCHHHHHHHHHH
Q 003977 354 FKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL-NYAGCGNTLNCNHPVVMELILDS 431 (782)
Q Consensus 354 lk~LV~~~H~~Gi~VIlDv-V~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~-~~~~~~~~ln~~~p~v~~~i~d~ 431 (782)
+++||+-|.++||+||-.+ ++.|+.. |...++..... ....... .+....+.||..+|++.+++.+.
T Consensus 70 i~elv~yA~~rgI~vIPEId~PGH~~a------~~~~ypel~~~-----~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l 138 (311)
T cd06570 70 IREVVAYARDRGIRVVPEIDVPGHASA------IAVAYPELASG-----PGPYVIERGWGVFEPLLDPTNEETYTFLDNL 138 (311)
T ss_pred HHHHHHHHHHcCCEEEEeecCccchHH------HHHhCHHhccC-----CCccccccccccCCCccCCCChhHHHHHHHH
Confidence 9999999999999999888 4899764 22222111000 0000000 11111246899999999999999
Q ss_pred HHHHHHhc
Q 003977 432 LRHWVVEY 439 (782)
Q Consensus 432 l~~W~~e~ 439 (782)
+.-++.-|
T Consensus 139 ~~E~~~lF 146 (311)
T cd06570 139 FGEMAELF 146 (311)
T ss_pred HHHHHHhC
Confidence 99998655
No 125
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=79.17 E-value=2.6 Score=48.89 Aligned_cols=64 Identities=27% Similarity=0.289 Sum_probs=36.2
Q ss_pred cccccCCCCCCCCCCCCCCH-HHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCC
Q 003977 262 VRAFTGDESSGLDPEIRGSY-LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRY 340 (782)
Q Consensus 262 v~~Ft~~~~~g~~~~~~G~~-~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~y 340 (782)
+-+.....+.|+ ||| ..+.+-++.+++.|+..++|+|++... + ..++.|.+.+=|+.+|-|
T Consensus 3 l~SLrs~~~~GI-----GDfg~dl~~~~d~~~~~G~~i~qllpl~pt~---------~----~~~sPY~p~S~~alNPly 64 (496)
T PF02446_consen 3 LYSLRSPRSWGI-----GDFGDDLYQFIDWAAEAGQSIWQLLPLNPTG---------P----GNSSPYSPSSRFALNPLY 64 (496)
T ss_dssp GGGS-SSS--SS-------SSHHHHHHHHHHHHCT--EEE----S-B----------T----TCTTTTSBS-SSS--GGG
T ss_pred CCcCCCCCCCce-----ecHHHHHHHHHHHHHHcCCCeeccccccCCC---------C----CCCCCCCCCCCCcCChHH
Confidence 333333344466 999 999999999999999999999999862 1 245589999999999888
Q ss_pred CCC
Q 003977 341 AAG 343 (782)
Q Consensus 341 Gt~ 343 (782)
=+.
T Consensus 65 I~l 67 (496)
T PF02446_consen 65 IDL 67 (496)
T ss_dssp S-S
T ss_pred cCH
Confidence 654
No 126
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=79.06 E-value=4.4 Score=41.92 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=39.8
Q ss_pred CCCCHHHHHh---h----chHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCc
Q 003977 277 IRGSYLGLIQ---K----IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLK 349 (782)
Q Consensus 277 ~~G~~~gl~~---~----LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~ 349 (782)
.+|||..+.- + +.++|+||+++|+++= |.-...
T Consensus 59 ~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~-----------------------G~~~i~----------------- 98 (237)
T TIGR03849 59 PGGTLFEIAHSKGKFDEYLNECDELGFEAVEISD-----------------------GSMEIS----------------- 98 (237)
T ss_pred CCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcC-----------------------CccCCC-----------------
Confidence 3477755432 2 5599999999999873 211111
Q ss_pred hHHHHHHHHHHHhhCCcEEEEee
Q 003977 350 ASWEFKEMVKALHGAGIEVILDV 372 (782)
Q Consensus 350 ~~~elk~LV~~~H~~Gi~VIlDv 372 (782)
.++..++|+.+|++|++|+-.+
T Consensus 99 -~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 99 -LEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred -HHHHHHHHHHHHhCCCeEeccc
Confidence 1889999999999999998664
No 127
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=77.94 E-value=25 Score=37.37 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=67.2
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH-HHHhhC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV-KALHGA 364 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV-~~~H~~ 364 (782)
.-|+.|+++|+|+|+|-++.+.+.+ |=...- |=|+.++-- +.+=|-+.+ +...+.
T Consensus 21 ~l~~ri~~~~~~tV~Lqaf~d~~gd----------------g~~~~~-YFpnr~lpv-------raDlf~rvawql~tr~ 76 (294)
T PF14883_consen 21 KLIQRIKDMGINTVYLQAFADPDGD----------------GNADAV-YFPNRHLPV-------RADLFNRVAWQLRTRA 76 (294)
T ss_pred HHHHHHHHcCCCEEEEEeeeCCCCC----------------CceeeE-EcCCCCCch-------HHHHHHHHHHHHhhhh
Confidence 3478899999999999998764210 111111 112222221 224456666 444589
Q ss_pred CcEEEEeeecccccCCCCCCCccc-cccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccE
Q 003977 365 GIEVILDVVYNHTNEADDANPYTT-SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDG 443 (782)
Q Consensus 365 Gi~VIlDvV~NH~~~~~~~~~~~~-~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDG 443 (782)
|++|+.-+..=-..-. +...+-. .....++..| ..|.--+|++|+.|.+...-....-.|||
T Consensus 77 ~v~VyAWMPvlaf~lp-~~~~~~~~~~~~~~~~~y----------------~RLSPf~p~~r~~I~~IYeDLA~y~~fdG 139 (294)
T PF14883_consen 77 GVKVYAWMPVLAFDLP-KVKRADEVRTDRPDPDGY----------------RRLSPFDPEARQIIKEIYEDLARYSKFDG 139 (294)
T ss_pred CCEEEEeeehhhccCC-CcchhhhccccCCCCCCc----------------eecCCCCHHHHHHHHHHHHHHHhhCCCCe
Confidence 9999877753111000 0000000 0000011112 23444579999999999999996569999
Q ss_pred EEEc
Q 003977 444 FRFD 447 (782)
Q Consensus 444 FR~D 447 (782)
+=|-
T Consensus 140 ILFh 143 (294)
T PF14883_consen 140 ILFH 143 (294)
T ss_pred EEEc
Confidence 9993
No 128
>TIGR03356 BGL beta-galactosidase.
Probab=74.80 E-value=14 Score=42.08 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=63.7
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCC-CCCCCCCCCchHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR-YAAGGGGPLKASWEFKEM 357 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~-yGt~~~~p~~~~~elk~L 357 (782)
.-|.-..+-|+-||+||+|++=+.=-+.. +.|. -|.. -...++-++++
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsr----------------------------i~p~g~~~~---n~~~~~~y~~~ 99 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPR----------------------------IFPEGTGPV---NPKGLDFYDRL 99 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhh----------------------------cccCCCCCc---CHHHHHHHHHH
Confidence 45777888999999999999986432221 1111 0100 01235779999
Q ss_pred HHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 003977 358 VKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVV 437 (782)
Q Consensus 358 V~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~ 437 (782)
|++|.++||++|+++. |.. .|. +.. +. . -+.++++.+.+.+.++.-++
T Consensus 100 i~~l~~~gi~pivtL~--Hfd-----~P~-----------~l~-~~-------g------Gw~~~~~~~~f~~ya~~~~~ 147 (427)
T TIGR03356 100 VDELLEAGIEPFVTLY--HWD-----LPQ-----------ALE-DR-------G------GWLNRDTAEWFAEYAAVVAE 147 (427)
T ss_pred HHHHHHcCCeeEEeec--cCC-----ccH-----------HHH-hc-------C------CCCChHHHHHHHHHHHHHHH
Confidence 9999999999999985 532 121 110 00 0 13557777888888887777
Q ss_pred hcC
Q 003977 438 EYH 440 (782)
Q Consensus 438 e~g 440 (782)
+||
T Consensus 148 ~~~ 150 (427)
T TIGR03356 148 RLG 150 (427)
T ss_pred HhC
Confidence 776
No 129
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=74.45 E-value=9.8 Score=41.28 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccccccC-CCCC--CC---CChHHHHHHHh--ccccCCceEE
Q 003977 416 TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG-TDGS--PL---NAPPLIRAIAK--DAILSRCKII 482 (782)
Q Consensus 416 ~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~-~~g~--~~---~~~~~l~~i~~--~~~~~~~~li 482 (782)
.+++.+|+.+++|.+-+...+ +.|+|||-+|.+.....- ..+. .. ....++++|.. ++..|++.||
T Consensus 137 ~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 137 DVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred eEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 478889999999999887766 789999999976655321 1011 11 11235666643 3456777777
No 130
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=73.72 E-value=8.4 Score=42.55 Aligned_cols=120 Identities=19% Similarity=0.094 Sum_probs=63.3
Q ss_pred hchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCc
Q 003977 287 KIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGI 366 (782)
Q Consensus 287 ~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi 366 (782)
-++-+|++|+..|-|+--+.- +..-|.=...+|...+..++. +=+++|+++|+++||
T Consensus 96 W~~~ak~aGakY~VlTakHHD--------------GF~LW~S~~t~~~v~~~~~kr---------Div~El~~A~rk~Gl 152 (346)
T PF01120_consen 96 WAKLAKDAGAKYVVLTAKHHD--------------GFCLWPSKYTDYNVVNSGPKR---------DIVGELADACRKYGL 152 (346)
T ss_dssp HHHHHHHTT-SEEEEEEE-TT----------------BSS--TT-SSBGGGGGGTS----------HHHHHHHHHHHTT-
T ss_pred HHHHHHHcCCCEEEeehhhcC--------------ccccCCCCCCcccccCCCCCC---------CHHHHHHHHHHHcCC
Confidence 467889999999997764432 012233334455555533332 789999999999999
Q ss_pred EEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCccEEE
Q 003977 367 EVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCN-HPVVMELILDSLRHWVVEYHVDGFR 445 (782)
Q Consensus 367 ~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~-~p~v~~~i~d~l~~W~~e~gVDGFR 445 (782)
++.+ |=|... -.++.. ..+..+ +..+ .....-. ...+.+++..-++-.+..|.+|.+=
T Consensus 153 k~G~---Y~S~~d--w~~~~~------------~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lW 211 (346)
T PF01120_consen 153 KFGL---YYSPWD--WHHPDY------------PPDEEG---DENG-PADGPGNWQRYYNEYWLAQLRELLTRYKPDILW 211 (346)
T ss_dssp EEEE---EEESSS--CCCTTT------------TSSCHC---HHCC---HCCHHHHHHHHHHHHHHHHHHHHCSTESEEE
T ss_pred eEEE---EecchH--hcCccc------------CCCccC---Cccc-ccccchhhHhHhhhhhHHHHHHHHhCCCcceEE
Confidence 9998 222211 011111 000000 0000 0000000 1124557788899999999999999
Q ss_pred Ecccc
Q 003977 446 FDLAS 450 (782)
Q Consensus 446 ~D~a~ 450 (782)
||...
T Consensus 212 fDg~~ 216 (346)
T PF01120_consen 212 FDGGW 216 (346)
T ss_dssp EESTT
T ss_pred ecCCC
Confidence 99653
No 131
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=72.63 E-value=4.1 Score=43.72 Aligned_cols=51 Identities=35% Similarity=0.372 Sum_probs=30.9
Q ss_pred HHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 003977 284 LIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 363 (782)
Q Consensus 284 l~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~ 363 (782)
....|++||+||+|+|-+--|-.. .|+ +++..+ +.+
T Consensus 55 C~rDi~~l~~LgiNtIRVY~vdp~-----------------------~nH------------------d~CM~~---~~~ 90 (314)
T PF03198_consen 55 CKRDIPLLKELGINTIRVYSVDPS-----------------------KNH------------------DECMSA---FAD 90 (314)
T ss_dssp HHHHHHHHHHHT-SEEEES---TT-----------------------S--------------------HHHHHH---HHH
T ss_pred HHHhHHHHHHcCCCEEEEEEeCCC-----------------------CCH------------------HHHHHH---HHh
Confidence 334599999999999986544322 111 666554 566
Q ss_pred CCcEEEEeeeccccc
Q 003977 364 AGIEVILDVVYNHTN 378 (782)
Q Consensus 364 ~Gi~VIlDvV~NH~~ 378 (782)
.||.||+|+---+.+
T Consensus 91 aGIYvi~Dl~~p~~s 105 (314)
T PF03198_consen 91 AGIYVILDLNTPNGS 105 (314)
T ss_dssp TT-EEEEES-BTTBS
T ss_pred CCCEEEEecCCCCcc
Confidence 999999999755443
No 132
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=72.04 E-value=3.9 Score=44.63 Aligned_cols=60 Identities=15% Similarity=0.296 Sum_probs=36.8
Q ss_pred HHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 003977 284 LIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 363 (782)
Q Consensus 284 l~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~ 363 (782)
..+.|..+|++|+|+|..-=.....| +.+ + ..|| ... .+|.+|++.|++
T Consensus 26 W~~~l~k~ka~G~n~v~~yv~W~~he------~~~-----g-----~~df-------~g~--------~dl~~f~~~a~~ 74 (319)
T PF01301_consen 26 WRDRLQKMKAAGLNTVSTYVPWNLHE------PEE-----G-----QFDF-------TGN--------RDLDRFLDLAQE 74 (319)
T ss_dssp HHHHHHHHHHTT-SEEEEE--HHHHS------SBT-----T-----B----------SGG--------G-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCcceEEEeccccccC------CCC-----C-----cccc-------cch--------hhHHHHHHHHHH
Confidence 34678889999999999754444422 111 0 1222 112 789999999999
Q ss_pred CCcEEEEeeec
Q 003977 364 AGIEVILDVVY 374 (782)
Q Consensus 364 ~Gi~VIlDvV~ 374 (782)
+||.|||-.=+
T Consensus 75 ~gl~vilrpGp 85 (319)
T PF01301_consen 75 NGLYVILRPGP 85 (319)
T ss_dssp TT-EEEEEEES
T ss_pred cCcEEEecccc
Confidence 99999998643
No 133
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=71.37 E-value=6.2 Score=41.05 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=38.4
Q ss_pred CCCHHHHHh-------hchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCch
Q 003977 278 RGSYLGLIQ-------KIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKA 350 (782)
Q Consensus 278 ~G~~~gl~~-------~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~ 350 (782)
+||+..++- -|+++|+||+++|+++= |.-...
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSd-----------------------Gti~l~------------------ 111 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEISD-----------------------GTIDLP------------------ 111 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE-------------------------SSS---------------------
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecC-----------------------CceeCC------------------
Confidence 477766543 37889999999999863 222221
Q ss_pred HHHHHHHHHHHhhCCcEEEEeee
Q 003977 351 SWEFKEMVKALHGAGIEVILDVV 373 (782)
Q Consensus 351 ~~elk~LV~~~H~~Gi~VIlDvV 373 (782)
.++..++|+.+.++|++|+-.|=
T Consensus 112 ~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 112 EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHHHHHCCCEEeeccc
Confidence 18899999999999999998773
No 134
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=70.67 E-value=15 Score=44.04 Aligned_cols=61 Identities=8% Similarity=0.054 Sum_probs=40.3
Q ss_pred EEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCC------CCCceEEEEEec
Q 003977 122 NFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLP------RSEVLYGYRVDG 188 (782)
Q Consensus 122 ~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~------~~g~~Y~y~i~~ 188 (782)
.|++|+|.|+.+++.+|.... .++...-..+. +.+-..| +|...+.|.. ..++.|.|.+..
T Consensus 70 iw~~~~p~~~~g~~y~yr~~g---~~~~~~g~~f~--~~k~l~d-pya~~l~g~~~~~~~~~~~y~~~~~~~~ 136 (697)
T COG1523 70 IWHLWLPGAKPGQVYGYRVHG---PYDPEEGHRFD--PNKLLLD-PYAKALDGDLKWGTPALFGYYYGYQITN 136 (697)
T ss_pred EEEEEcCCCceeeEEEEecCC---CcCCccCeeec--ccccccc-ceeEEeccccccCccccccccccccccc
Confidence 899999999999999998642 24333333443 3344556 9999998722 223555666654
No 135
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=69.44 E-value=8.3 Score=41.83 Aligned_cols=66 Identities=18% Similarity=0.278 Sum_probs=45.0
Q ss_pred HHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHH
Q 003977 354 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLR 433 (782)
Q Consensus 354 lk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~ 433 (782)
..++++.+|++|++|++=|- +.... + + . .. .+ .--..++..|+.+++++.
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~~----~--~---~----~~-----------~~-----~~~l~~~~~r~~fi~~iv 96 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTNG----N--F---D----SE-----------LA-----HAVLSNPEARQRLINNIL 96 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCCC----C--C---C----HH-----------HH-----HHHhcCHHHHHHHHHHHH
Confidence 35799999999999997653 22110 0 0 0 00 00 011346888999999999
Q ss_pred HHHHhcCccEEEEccc
Q 003977 434 HWVVEYHVDGFRFDLA 449 (782)
Q Consensus 434 ~W~~e~gVDGFR~D~a 449 (782)
.+++++|+||+-+|--
T Consensus 97 ~~l~~~~~DGidiDwE 112 (313)
T cd02874 97 ALAKKYGYDGVNIDFE 112 (313)
T ss_pred HHHHHhCCCcEEEecc
Confidence 9999999999999953
No 136
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=68.45 E-value=7.4 Score=46.92 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=49.2
Q ss_pred EecccccCCCCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCC
Q 003977 260 MNVRAFTGDESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSR 339 (782)
Q Consensus 260 i~v~~Ft~~~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~ 339 (782)
+|+-+.....+-|+ |||..+.+-+|.+++.|...|+|+|+.+.... ++. ..+-.|.+.+=|+.+|-
T Consensus 66 l~l~SLrS~~s~GI-----GDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~------~~~---~dSSPYsp~S~fAlNPl 131 (745)
T PLN03236 66 LPVFSLRSAESVGA-----GDFGDLEALVDFAAEAGMSVVQLLPVNDTCVH------GTF---WDSYPYSSLSVHALHPL 131 (745)
T ss_pred eccccCCCCCCCCc-----ccHHHHHHHHHHHHHcCCCEEEECCCCcCCCC------CCC---CCCCCcCcccccccChH
Confidence 34444433444566 99999888899999999999999999876210 000 01126888998888888
Q ss_pred CCCC
Q 003977 340 YAAG 343 (782)
Q Consensus 340 yGt~ 343 (782)
|=+.
T Consensus 132 yIdl 135 (745)
T PLN03236 132 YLKL 135 (745)
T ss_pred HcCH
Confidence 8664
No 137
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=65.78 E-value=23 Score=35.56 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhC--CcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHH
Q 003977 352 WEFKEMVKALHGA--GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL 429 (782)
Q Consensus 352 ~elk~LV~~~H~~--Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~ 429 (782)
+.....++++|++ |++|++=+--.. .. . . . --..++..|+.++
T Consensus 49 ~~~~~~i~~l~~~~~g~kv~~sigg~~-~~----~-------------~----------------~-~~~~~~~~~~~f~ 93 (210)
T cd00598 49 EPLKGALEELASKKPGLKVLISIGGWT-DS----S-------------P----------------F-TLASDPASRAAFA 93 (210)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEcCCC-CC----C-------------C----------------c-hhhcCHHHHHHHH
Confidence 5566777788887 999998772111 00 0 0 0 0124577888899
Q ss_pred HHHHHHHHhcCccEEEEccc
Q 003977 430 DSLRHWVVEYHVDGFRFDLA 449 (782)
Q Consensus 430 d~l~~W~~e~gVDGFR~D~a 449 (782)
+++..+++++++||+-+|.-
T Consensus 94 ~~~~~~v~~~~~DGidiD~E 113 (210)
T cd00598 94 NSLVSFLKTYGFDGVDIDWE 113 (210)
T ss_pred HHHHHHHHHcCCCceEEeee
Confidence 99999999999999999954
No 138
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=65.05 E-value=53 Score=36.84 Aligned_cols=114 Identities=21% Similarity=0.189 Sum_probs=68.7
Q ss_pred hchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCc
Q 003977 287 KIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGI 366 (782)
Q Consensus 287 ~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi 366 (782)
-++-+|+.|+..|-|+--+.- +..-|.=...+|.+++..+.. +=+++|+++|+++||
T Consensus 86 Wa~~~k~AGakY~vlTaKHHD--------------GF~lw~S~~t~~n~~~~~pkr---------Div~el~~A~rk~Gl 142 (384)
T smart00812 86 WADLFKKAGAKYVVLTAKHHD--------------GFCLWDSKYSNWNAVDTGPKR---------DLVGELADAVRKRGL 142 (384)
T ss_pred HHHHHHHcCCCeEEeeeeecC--------------CccccCCCCCCCcccCCCCCc---------chHHHHHHHHHHcCC
Confidence 477889999999987654321 012233334466666554422 779999999999999
Q ss_pred EEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHH---HHHHHHHHHhcCccE
Q 003977 367 EVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI---LDSLRHWVVEYHVDG 443 (782)
Q Consensus 367 ~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i---~d~l~~W~~e~gVDG 443 (782)
++-+ | |... .|. ++.|-... . ........+...+|+ ..-++-.+..||-|.
T Consensus 143 k~G~---Y-~S~~-----DW~-------~p~y~~~~------~----~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~ 196 (384)
T smart00812 143 KFGL---Y-HSLF-----DWF-------NPLYAGPT------S----SDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDL 196 (384)
T ss_pred eEEE---E-cCHH-----HhC-------CCcccccc------c----cccccccchhHHHHHHHHHHHHHHHHhcCCCce
Confidence 9988 2 2111 011 11221000 0 000112335566777 777888888999999
Q ss_pred EEEccc
Q 003977 444 FRFDLA 449 (782)
Q Consensus 444 FR~D~a 449 (782)
+=||..
T Consensus 197 lWfD~~ 202 (384)
T smart00812 197 LWFDGG 202 (384)
T ss_pred EEEeCC
Confidence 999954
No 139
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=64.95 E-value=11 Score=43.86 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=41.3
Q ss_pred CCHH-HHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCC
Q 003977 279 GSYL-GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAA 342 (782)
Q Consensus 279 G~~~-gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt 342 (782)
|||. ++.+-++.+++.|++.|+|+|+..... ..+ .|.+.+=|+.+|-|=+
T Consensus 23 GDfg~dl~~~id~~~~~G~~~~qilPl~~~~~-------------~~S-PY~~~S~~alnplyI~ 73 (497)
T PRK14508 23 GDFGKGAYEFIDFLAEAGQSYWQILPLGPTGY-------------GDS-PYQSFSAFAGNPLLID 73 (497)
T ss_pred cchHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-------------CCC-CcCcccccccChhhcC
Confidence 9995 999999999999999999999998621 122 6888888888877765
No 140
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=64.62 E-value=30 Score=39.62 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhCCcEEEEee-ecccccCCCCC----CCccccccCCC--CCcceeeCCC--CCccCcCC-CCCCCCCC
Q 003977 351 SWEFKEMVKALHGAGIEVILDV-VYNHTNEADDA----NPYTTSFRGID--NKVYYMVDGT--GQLLNYAG-CGNTLNCN 420 (782)
Q Consensus 351 ~~elk~LV~~~H~~Gi~VIlDv-V~NH~~~~~~~----~~~~~~~~~~~--~~~yy~~d~~--g~~~~~~~-~~~~ln~~ 420 (782)
.+|+++||+-|+++||+||-.+ ++.|+...-.. .|-+.. .+.. ...|...++. ..+....+ ..+.||-.
T Consensus 96 ~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~-~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~ 174 (445)
T cd06569 96 RADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMA-AGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPC 174 (445)
T ss_pred HHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhc-cCCccccccccccCcccccccccccccccccccCC
Confidence 3999999999999999999888 48897641100 000000 0000 0011111111 11111111 12468999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 003977 421 HPVVMELILDSLRHWVV 437 (782)
Q Consensus 421 ~p~v~~~i~d~l~~W~~ 437 (782)
+|.+.+++.+.+...+.
T Consensus 175 ~~~ty~fl~~vl~Ev~~ 191 (445)
T cd06569 175 MPSTYRFVDKVIDEIAR 191 (445)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999999884
No 141
>PRK14705 glycogen branching enzyme; Provisional
Probab=63.53 E-value=19 Score=46.09 Aligned_cols=77 Identities=21% Similarity=0.365 Sum_probs=49.5
Q ss_pred CCccEEeCCcE-EEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCC-CCCCceEEEEEec
Q 003977 111 PIGVSEVENGI-NFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDL-PRSEVLYGYRVDG 188 (782)
Q Consensus 111 ~lGa~~~~~g~-~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~-~~~g~~Y~y~i~~ 188 (782)
-||.|..++|+ .+|+|-|.|.+|+|+.- .. ..+|.. ...| +|...+|.. ......|++++.-
T Consensus 522 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-~~------------~~~~~~--~~~g-~~~~~~~~~~~~~~~~y~~~~~~ 585 (1224)
T PRK14705 522 VLGAHLDDHGHVTVRTVKHLAKAVSVVTA-AG------------RVPMTH--EAHG-VWAAVLEPLQAGHVPDYRLEVTY 585 (1224)
T ss_pred hcCCcCCCCceEEEEEECCCCeEEEEEeC-CC------------ceeeee--CCCC-EEEEeccccccCCCCCeEEEEEe
Confidence 39999888885 79999999999999632 11 123432 3456 999999841 0111248888863
Q ss_pred CCCCCCCccccCceeeeCccccc
Q 003977 189 PRDWHQGHRFDSSIVLIDPYAKL 211 (782)
Q Consensus 189 ~~~~~~~~~~~~~~~~~DPyA~~ 211 (782)
.. + ....+.|||+..
T Consensus 586 ~~----~----~~~~~~d~y~~~ 600 (1224)
T PRK14705 586 DG----A----EPVTIDDPYHYL 600 (1224)
T ss_pred CC----c----cceEeccccccC
Confidence 21 1 113568999864
No 142
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=62.79 E-value=16 Score=39.18 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=40.2
Q ss_pred CHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCC---CC--CCCCCCCCCCCCCCCCCCchHHHH
Q 003977 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGY---ST--INFFSPMSRYAAGGGGPLKASWEF 354 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY---~~--~dy~a~d~~yGt~~~~p~~~~~el 354 (782)
+...+..-|+.+|+-|+|.|+++=+.+.+..... +. ....++ ++ .||..+++.| -+-+
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~---n~----~~~~~~~~~~~~~~d~~~~N~~Y----------F~~~ 90 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP---NR----YGFAPFPDEDPGQFDFTRPNPAY----------FDHL 90 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B-------T----TS-BS-SSTT------TT----H----------HHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCccccccc---cc----CCCcCCCCCCccccCCCCCCHHH----------HHHH
Confidence 3444555589999999999998776665322110 10 111121 11 4677777776 3789
Q ss_pred HHHHHHHhhCCcEEEEeeeccc
Q 003977 355 KEMVKALHGAGIEVILDVVYNH 376 (782)
Q Consensus 355 k~LV~~~H~~Gi~VIlDvV~NH 376 (782)
.++|+.|.++||.+ ++|+=|
T Consensus 91 d~~i~~a~~~Gi~~--~lv~~w 110 (289)
T PF13204_consen 91 DRRIEKANELGIEA--ALVPFW 110 (289)
T ss_dssp HHHHHHHHHTT-EE--EEESS-
T ss_pred HHHHHHHHHCCCeE--EEEEEE
Confidence 99999999999998 466655
No 143
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=61.23 E-value=68 Score=34.57 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=36.9
Q ss_pred CeEEEEEecccccCCCC--CCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccc
Q 003977 254 DLVIYEMNVRAFTGDES--SGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFE 306 (782)
Q Consensus 254 ~~vIYei~v~~Ft~~~~--~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e 306 (782)
.--||=|+|..=.+.+. ...+.-.+-....+.+.+..+.++|+++|.|-|+..
T Consensus 24 ~dlI~PlFv~e~~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~ 78 (320)
T cd04823 24 DDLILPLFVHEGENQREPIPSMPGVFRLSIDELLKEAEEAVDLGIPAVALFPVTP 78 (320)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 45678887755322211 223333445788999999999999999999999954
No 144
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=61.11 E-value=71 Score=34.00 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=40.6
Q ss_pred CCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCC-CCCCCCCCCCCCCCCCCCCchHHHHHH
Q 003977 278 RGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYS-TINFFSPMSRYAAGGGGPLKASWEFKE 356 (782)
Q Consensus 278 ~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~-~~dy~a~d~~yGt~~~~p~~~~~elk~ 356 (782)
+-++....+-+|+-+++|+..|.+ +. . ...|++. ..|+..+.+ . .++++
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv----D~--G------------W~~~~~~~~~d~~~~~~---~---------~dl~e 77 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV----DA--G------------WYGWEKDDDFDFTKPIP---D---------FDLPE 77 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE----BT--T------------CCGS--TTT--TT-B-T---T-----------HHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe----cc--c------------cccccccccccccccCC---c---------cCHHH
Confidence 468899999999999999999998 21 1 1112222 233333322 1 78999
Q ss_pred HHHHHhhCCcEEEEee
Q 003977 357 MVKALHGAGIEVILDV 372 (782)
Q Consensus 357 LV~~~H~~Gi~VIlDv 372 (782)
||+-++++|++|+|=+
T Consensus 78 lv~Ya~~KgVgi~lw~ 93 (273)
T PF10566_consen 78 LVDYAKEKGVGIWLWY 93 (273)
T ss_dssp HHHHHHHTT-EEEEEE
T ss_pred HHHHHHHcCCCEEEEE
Confidence 9999999999998755
No 145
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=60.93 E-value=76 Score=34.16 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=58.5
Q ss_pred CeEEEEEecccccCCC--CCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCC
Q 003977 254 DLVIYEMNVRAFTGDE--SSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTI 331 (782)
Q Consensus 254 ~~vIYei~v~~Ft~~~--~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~ 331 (782)
+--||=|+|..=.+.+ -...+.-.+=....+.+.+..+.++||++|-|-|+-+....+
T Consensus 21 ~dlI~PlFV~eg~~~~~~I~smPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd-------------------- 80 (320)
T cd04824 21 SNLIYPIFITDNPDAKQPIDSLPGINRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKD-------------------- 80 (320)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCC--------------------
Confidence 4567878775422211 122233345678899999999999999999999995331110
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccC
Q 003977 332 NFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 379 (782)
Q Consensus 332 dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~ 379 (782)
+..|+...+|...+..--+.|++.. -.|-||-||.+..-..
T Consensus 81 ------~~~gs~a~~~~g~v~~air~iK~~~-pdl~vi~Dvclc~YT~ 121 (320)
T cd04824 81 ------DRSGSAADDEDGPVIQAIKLIREEF-PELLIACDVCLCEYTS 121 (320)
T ss_pred ------cCccccccCCCChHHHHHHHHHHhC-CCcEEEEeeeccCCCC
Confidence 1113332233222333333444443 4899999999887543
No 146
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=60.31 E-value=24 Score=37.73 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhCCcEEEEee
Q 003977 352 WEFKEMVKALHGAGIEVILDV 372 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDv 372 (782)
.+|.+-|+.|+++|++|+|=+
T Consensus 59 ~~~~~dI~~cq~~G~KVlLSI 79 (280)
T cd02877 59 PQLGADIKHCQSKGKKVLLSI 79 (280)
T ss_pred hhHHHHHHHHHHCCCEEEEEc
Confidence 689999999999999999954
No 147
>PLN03059 beta-galactosidase; Provisional
Probab=59.72 E-value=14 Score=45.14 Aligned_cols=57 Identities=16% Similarity=0.349 Sum_probs=39.5
Q ss_pred HhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhC
Q 003977 285 IQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGA 364 (782)
Q Consensus 285 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~ 364 (782)
.++|.-+|.+|+|+|..==.+...| |.+ +. .| |.+. .||.+||+.|++.
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn~HE------p~~-----G~-----~d-------F~G~--------~DL~~Fl~la~e~ 110 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWNGHE------PSP-----GN-----YY-------FEDR--------YDLVKFIKVVQAA 110 (840)
T ss_pred HHHHHHHHHcCCCeEEEEecccccC------CCC-----Ce-----ee-------ccch--------HHHHHHHHHHHHc
Confidence 3568889999999999654443322 111 00 12 2233 8999999999999
Q ss_pred CcEEEEee
Q 003977 365 GIEVILDV 372 (782)
Q Consensus 365 Gi~VIlDv 372 (782)
||.|||=.
T Consensus 111 GLyvilRp 118 (840)
T PLN03059 111 GLYVHLRI 118 (840)
T ss_pred CCEEEecC
Confidence 99999864
No 148
>PTZ00445 p36-lilke protein; Provisional
Probab=59.66 E-value=16 Score=37.05 Aligned_cols=69 Identities=23% Similarity=0.287 Sum_probs=40.0
Q ss_pred HHHHHhh-chHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 003977 281 YLGLIQK-IPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 359 (782)
Q Consensus 281 ~~gl~~~-LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~ 359 (782)
....+++ .+.|+++||.+|-+ ++|..-... | +=||.-.+ +-+..+++.. ..+|+++++
T Consensus 27 ~~~~~~~~v~~L~~~GIk~Va~----D~DnTlI~~------H---sgG~~~~~--~~~~~~~~~~------tpefk~~~~ 85 (219)
T PTZ00445 27 PHESADKFVDLLNECGIKVIAS----DFDLTMITK------H---SGGYIDPD--NDDIRVLTSV------TPDFKILGK 85 (219)
T ss_pred HHHHHHHHHHHHHHcCCeEEEe----cchhhhhhh------h---cccccCCC--cchhhhhccC------CHHHHHHHH
Confidence 3444444 58899999999963 332211100 0 01343322 2223343321 178999999
Q ss_pred HHhhCCcEEEE
Q 003977 360 ALHGAGIEVIL 370 (782)
Q Consensus 360 ~~H~~Gi~VIl 370 (782)
++.+.||+|++
T Consensus 86 ~l~~~~I~v~V 96 (219)
T PTZ00445 86 RLKNSNIKISV 96 (219)
T ss_pred HHHHCCCeEEE
Confidence 99999999974
No 149
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=57.35 E-value=53 Score=29.04 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=35.2
Q ss_pred EEEEEEcCCC--CeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEe
Q 003977 121 INFAIFSQHA--TAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVD 187 (782)
Q Consensus 121 ~~F~vwaP~a--~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~ 187 (782)
++|++-..+. +++.|++..+. .++|+.. ..++|......++..|++.|.-.......|+|.|.
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~--LG~W~~~--~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v~ 66 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPL--LGSWNVK--KGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYVV 66 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHH--cCCcChH--hcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEEE
Confidence 5677665554 45556554432 4567643 35566431122334899888632224578999984
No 150
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=56.99 E-value=26 Score=39.11 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=43.7
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
++|+.|+++|||.|.|- |..+++... -.+. +-.+. ++..+.++.+++.|
T Consensus 109 e~l~~l~~~G~~rvslG-vQS~~~~~L---------------------~~l~-R~~s~--------~~~~~a~~~l~~~g 157 (375)
T PRK05628 109 EFFAALRAAGFTRVSLG-MQSAAPHVL---------------------AVLD-RTHTP--------GRAVAAAREARAAG 157 (375)
T ss_pred HHHHHHHHcCCCEEEEe-cccCCHHHH---------------------HHcC-CCCCH--------HHHHHHHHHHHHcC
Confidence 57999999999999874 444322111 0111 11232 88999999999999
Q ss_pred cE-EEEeeeccccc
Q 003977 366 IE-VILDVVYNHTN 378 (782)
Q Consensus 366 i~-VIlDvV~NH~~ 378 (782)
+. |.+|++++.-+
T Consensus 158 ~~~v~~dli~GlPg 171 (375)
T PRK05628 158 FEHVNLDLIYGTPG 171 (375)
T ss_pred CCcEEEEEeccCCC
Confidence 99 99999998744
No 151
>PRK15452 putative protease; Provisional
Probab=55.71 E-value=74 Score=36.41 Aligned_cols=19 Identities=11% Similarity=0.122 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhCCcEEEE
Q 003977 352 WEFKEMVKALHGAGIEVIL 370 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIl 370 (782)
++|++.|+.||++|++|++
T Consensus 46 edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 46 ENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 8999999999999999977
No 152
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=55.68 E-value=51 Score=38.55 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=42.9
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
++|+.|+++|+|.|+|-. ..+++... -.++... + .++..+-++.+++.|
T Consensus 207 e~L~~L~~~G~~rVslGV-QS~~d~VL---------------------~~inRgh-t--------~~~v~~Ai~~lr~~G 255 (522)
T TIGR01211 207 EHIDRMLKLGATRVELGV-QTIYNDIL---------------------ERTKRGH-T--------VRDVVEATRLLRDAG 255 (522)
T ss_pred HHHHHHHHcCCCEEEEEC-ccCCHHHH---------------------HHhCCCC-C--------HHHHHHHHHHHHHcC
Confidence 579999999999999864 33221111 1122211 2 288999999999999
Q ss_pred cEEEEeeecccc
Q 003977 366 IEVILDVVYNHT 377 (782)
Q Consensus 366 i~VIlDvV~NH~ 377 (782)
++|.+|+.++--
T Consensus 256 ~~v~~~LM~GLP 267 (522)
T TIGR01211 256 LKVVYHIMPGLP 267 (522)
T ss_pred CeEEEEeecCCC
Confidence 999999998763
No 153
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=55.36 E-value=39 Score=37.51 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=43.1
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
++|..|+++|||.|.|-. ..+++ .-+-.+ .+-.+. ++..+.|+.+++.|
T Consensus 101 e~l~~l~~~Gv~risiGv-qS~~~---------------------~~l~~l-gR~~~~--------~~~~~ai~~l~~~G 149 (360)
T TIGR00539 101 EWCKGLKGAGINRLSLGV-QSFRD---------------------DKLLFL-GRQHSA--------KNIAPAIETALKSG 149 (360)
T ss_pred HHHHHHHHcCCCEEEEec-ccCCh---------------------HHHHHh-CCCCCH--------HHHHHHHHHHHHcC
Confidence 579999999999998753 32211 111122 233343 88999999999999
Q ss_pred cE-EEEeeeccccc
Q 003977 366 IE-VILDVVYNHTN 378 (782)
Q Consensus 366 i~-VIlDvV~NH~~ 378 (782)
+. |-+|+.++..+
T Consensus 150 ~~~v~~dli~GlPg 163 (360)
T TIGR00539 150 IENISLDLMYGLPL 163 (360)
T ss_pred CCeEEEeccCCCCC
Confidence 96 77999987644
No 154
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=55.29 E-value=41 Score=35.46 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEccccccccCCCCCCCCChHHHHHHHh
Q 003977 420 NHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 472 (782)
Q Consensus 420 ~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~g~~~~~~~~l~~i~~ 472 (782)
.+++-|+.+++++.-++++|++||+-||--.-.. ......++++++.
T Consensus 92 ~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~------~~~~~~ll~~Lr~ 138 (256)
T cd06546 92 DDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMS------LDGIIRLIDRLRS 138 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCC------HhHHHHHHHHHHH
Confidence 3456677778888888999999999999432211 1123456777765
No 155
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=54.94 E-value=92 Score=33.68 Aligned_cols=51 Identities=27% Similarity=0.285 Sum_probs=35.4
Q ss_pred CeEEEEEecccccCCCC--CCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCc
Q 003977 254 DLVIYEMNVRAFTGDES--SGLDPEIRGSYLGLIQKIPHLLELGINAVELLPV 304 (782)
Q Consensus 254 ~~vIYei~v~~Ft~~~~--~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi 304 (782)
+--||=|+|..=.+.+. ...+.-.+-....+.+.+..+.++||++|-|-|+
T Consensus 29 ~dlI~PiFV~eg~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~av~LFgv 81 (323)
T PRK09283 29 NDLIYPLFVVEGENEREEIPSMPGVYRLSIDLLVKEAEEAVELGIPAVALFGV 81 (323)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCc
Confidence 45677777765222111 2223334457888999999999999999999999
No 156
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=54.86 E-value=52 Score=37.98 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=45.2
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
..|....+-++-+++||+|+.-+.--+.. .-| +..-+. + -...++=.++||
T Consensus 68 D~Yhry~eDi~l~~~lG~~~yR~si~WsR--------------------i~P------~g~~~~-~--n~~~~~~Y~~~i 118 (474)
T PRK09852 68 DFYHRYKEDIALMAEMGFKVFRTSIAWSR--------------------LFP------QGDELT-P--NQQGIAFYRSVF 118 (474)
T ss_pred chhhhhHHHHHHHHHcCCCeEEeeceeee--------------------eee------CCCCCC-C--CHHHHHHHHHHH
Confidence 45788888899999999999886543322 001 000000 0 123457789999
Q ss_pred HHHhhCCcEEEEeee
Q 003977 359 KALHGAGIEVILDVV 373 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV 373 (782)
++|+++||++|+.+.
T Consensus 119 ~~l~~~gi~p~VtL~ 133 (474)
T PRK09852 119 EECKKYGIEPLVTLC 133 (474)
T ss_pred HHHHHcCCEEEEEee
Confidence 999999999998874
No 157
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=54.30 E-value=10 Score=41.74 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=40.9
Q ss_pred HHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003977 356 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHW 435 (782)
Q Consensus 356 ~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W 435 (782)
..|++||++|++|+-=+.+...+. ..+...+ =..++..+..+++-|...
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~----~~~~~~l---------------------------L~~~~~~~~~~a~kLv~l 98 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQ----VEWLEDF---------------------------LKKDEDGSFPVADKLVEV 98 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCc----hHHHHHH---------------------------hccCcccchHHHHHHHHH
Confidence 468899999999998665443210 0111110 001133455666777777
Q ss_pred HHhcCccEEEEcccccc
Q 003977 436 VVEYHVDGFRFDLASVL 452 (782)
Q Consensus 436 ~~e~gVDGFR~D~a~~l 452 (782)
++.||+||+=+|.-..+
T Consensus 99 ak~yGfDGw~iN~E~~~ 115 (339)
T cd06547 99 AKYYGFDGWLINIETEL 115 (339)
T ss_pred HHHhCCCceEeeeeccC
Confidence 88999999999954443
No 158
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=54.21 E-value=1e+02 Score=33.34 Aligned_cols=53 Identities=25% Similarity=0.219 Sum_probs=36.5
Q ss_pred CeEEEEEecccccCCC--CCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccc
Q 003977 254 DLVIYEMNVRAFTGDE--SSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFE 306 (782)
Q Consensus 254 ~~vIYei~v~~Ft~~~--~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e 306 (782)
+--||=|+|..=.+.. -...+.-.+=....+.+.+..+.++||++|-|-|+.+
T Consensus 31 ~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~ 85 (322)
T PRK13384 31 SDLIYPIFIEEHITDAVPISTLPGISRLPESALADEIERLYALGIRYVMPFGISH 85 (322)
T ss_pred HHceeeEEEecCCCCceecCCCCCcceECHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4567888886422111 1222333455778899999999999999999999943
No 159
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=53.43 E-value=33 Score=31.48 Aligned_cols=67 Identities=9% Similarity=0.132 Sum_probs=40.2
Q ss_pred eCCcEEEEEEcC--CCCeEEEEEEeCCCccccC-CCCCceeeeCCCCCCC-CCCEEEEEEeCCCCCCceEEEEEec
Q 003977 117 VENGINFAIFSQ--HATAVTLCLSLPKREKLDW-QDGGMIELPLDPRVNK-TGDIWHICIEDLPRSEVLYGYRVDG 188 (782)
Q Consensus 117 ~~~g~~F~vwaP--~a~~v~L~l~~~~~~~~~~-~~~~~~~~~l~~~~~~-~G~vW~~~v~~~~~~g~~Y~y~i~~ 188 (782)
.++.+++||++. .+++|.|+-..+.. + ..+.....+|...... .=|+|+++|+- +.....|.|+|.+
T Consensus 19 ~~~~l~IRLRt~k~Dv~~V~l~~~d~~~----~~~~~~~~~~~M~k~~~~~~fDyye~~l~~-~~~r~~Y~F~l~~ 89 (120)
T PF02903_consen 19 DGDTLHIRLRTAKNDVEKVFLVYGDPYE----EEGKWTYKSVEMEKIASDELFDYYEATLKL-PEKRLRYYFELED 89 (120)
T ss_dssp CTTEEEEEEEEETTT-SEEEEEEEETTS----ETTCECEEEEEEEEEEEESSEEEEEEEEE--TTSEEEEEEEEEE
T ss_pred CCCEEEEEEEecCCCCCEEEEEECCCcc----ccccceEEEEEeEEEEeCCCeEEEEEEEEC-CCCeEEEEEEEEe
Confidence 567788888886 56778776544321 1 1123345566432211 22699999984 4456889999986
No 160
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=52.66 E-value=44 Score=36.07 Aligned_cols=137 Identities=19% Similarity=0.184 Sum_probs=73.6
Q ss_pred CeEEEEEecccccCCCC--CCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCC
Q 003977 254 DLVIYEMNVRAFTGDES--SGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTI 331 (782)
Q Consensus 254 ~~vIYei~v~~Ft~~~~--~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~ 331 (782)
+--||=|+|..=.+... +..+.-.+-+...+.+.+..+.++||++|.|-|+.+....+
T Consensus 27 ~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd-------------------- 86 (324)
T PF00490_consen 27 SDLIYPLFVVEGENEKEPISSMPGVYRYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKD-------------------- 86 (324)
T ss_dssp GGEEEEEEEESSSSSEEEETTSTTEEEEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-B--------------------
T ss_pred HHeEEEEEEecCCCcceeccCCCCeeeeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCC--------------------
Confidence 56788888865332111 22332334567889999999999999999999995431111
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcC
Q 003977 332 NFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYA 411 (782)
Q Consensus 332 dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~ 411 (782)
..|+...+|...+..--+.|++.. -.|-||.||.+..-...+.++ +-. +.+|
T Consensus 87 -------~~gs~a~~~~g~v~~air~iK~~~-pdl~vi~Dvclc~YT~hGHcG--------il~------~~~g------ 138 (324)
T PF00490_consen 87 -------EEGSEAYNPDGLVQRAIRAIKKAF-PDLLVITDVCLCEYTSHGHCG--------ILD------DEDG------ 138 (324)
T ss_dssp -------SS-GGGGSTTSHHHHHHHHHHHHS-TTSEEEEEE-STTTBTSSSSS--------EB-------CTTS------
T ss_pred -------cchhcccCCCChHHHHHHHHHHhC-CCcEEEEecccccccCCCceE--------EEE------CCCC------
Confidence 112221222222344444444444 579999999987754322111 100 1111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEE
Q 003977 412 GCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 445 (782)
Q Consensus 412 ~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR 445 (782)
.-.|.+..+.+.+...-.. +-|.|-.-
T Consensus 139 ------~idND~Tl~~Lak~Al~~A-~AGADiVA 165 (324)
T PF00490_consen 139 ------EIDNDETLERLAKQALSHA-EAGADIVA 165 (324)
T ss_dssp ------SBEHHHHHHHHHHHHHHHH-HHT-SEEE
T ss_pred ------eEecHHHHHHHHHHHHHHH-HhCCCeec
Confidence 1234667777777777777 56887654
No 161
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=52.62 E-value=69 Score=36.72 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=44.3
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
++|..|+++|||.|.| .|..+++...+. + .+--+. ++..+.|+.+++.|
T Consensus 164 e~l~~l~~aGvnRiSi-GVQSf~d~vLk~---------------------l-gR~~~~--------~~~~~~i~~l~~~g 212 (449)
T PRK09058 164 EKADAALDAGANRFSI-GVQSFNTQVRRR---------------------A-GRKDDR--------EEVLARLEELVARD 212 (449)
T ss_pred HHHHHHHHcCCCEEEe-cCCcCCHHHHHH---------------------h-CCCCCH--------HHHHHHHHHHHhCC
Confidence 6899999999999975 566554322211 0 011122 88999999999999
Q ss_pred -cEEEEeeeccccc
Q 003977 366 -IEVILDVVYNHTN 378 (782)
Q Consensus 366 -i~VIlDvV~NH~~ 378 (782)
+.|.+|++|+.-+
T Consensus 213 ~~~v~~DlI~GlPg 226 (449)
T PRK09058 213 RAAVVCDLIFGLPG 226 (449)
T ss_pred CCcEEEEEEeeCCC
Confidence 8899999998744
No 162
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=52.24 E-value=1.1e+02 Score=31.84 Aligned_cols=85 Identities=9% Similarity=0.084 Sum_probs=41.6
Q ss_pred HHHhhchHHHHcCCcEEEECCccccchhhhhh---cCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 003977 283 GLIQKIPHLLELGINAVELLPVFEFDEMEFQR---RRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 359 (782)
Q Consensus 283 gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~---~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~ 359 (782)
.+.+.++-++++|++.|+|.-.++..-.+... ..+-. ....+..+.++......+...+.......+.++++|+
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLE---QVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIA 91 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCe---EEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHH
Confidence 35667888899999999996433321111110 00000 0000001111111111111111111123578899999
Q ss_pred HHhhCCcEEEE
Q 003977 360 ALHGAGIEVIL 370 (782)
Q Consensus 360 ~~H~~Gi~VIl 370 (782)
.|++.|.++|.
T Consensus 92 ~a~~lg~~~i~ 102 (254)
T TIGR03234 92 YARALGCPQVN 102 (254)
T ss_pred HHHHhCCCEEE
Confidence 99999999874
No 163
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=50.84 E-value=30 Score=41.90 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCC
Q 003977 269 ESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAG 343 (782)
Q Consensus 269 ~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~ 343 (782)
.+-|+ |||..+.+-++.+++.|.+.++|+|++..... +| ..+=.|.|.+=|+.+|-|=..
T Consensus 157 ~~~GI-----GDfgdl~~l~d~~a~~G~~~~qlnPlha~~p~------~p----~~~SPYsp~Sr~alNPlyI~~ 216 (695)
T PRK11052 157 HNWGI-----GDFGDLKQMLEDVAKRGGDFIGLNPIHALYPA------NP----ESASPYSPSSRRWLNVIYIDV 216 (695)
T ss_pred CCCCe-----ecHHHHHHHHHHHHHcCCCEEEECCCCcCCCC------CC----CCCCCcccccccccChHHcCH
Confidence 34566 99999999999999999999999999964110 01 122268999989999888764
No 164
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=50.45 E-value=55 Score=33.48 Aligned_cols=66 Identities=23% Similarity=0.358 Sum_probs=40.5
Q ss_pred HHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHh
Q 003977 283 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 362 (782)
Q Consensus 283 gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H 362 (782)
.+.+-.+.|+++|+..|+|+|.+..+......- ..-|.-.+.-. ...++++++.+.+.
T Consensus 146 ~i~~ia~~l~~l~~~~~~llpyh~~g~~Ky~~l---------g~~y~~~~~~~-------------~~~~~l~~~~~~~~ 203 (213)
T PRK10076 146 NMQQALDVLIPLGIKQIHLLPFHQYGEPKYRLL---------GKTWSMKEVPA-------------PSSADVATMREMAE 203 (213)
T ss_pred HHHHHHHHHHHcCCceEEEecCCccchhHHHHc---------CCcCccCCCCC-------------cCHHHHHHHHHHHH
Confidence 344445677888999999999988633211100 00122112111 11388999999999
Q ss_pred hCCcEEEE
Q 003977 363 GAGIEVIL 370 (782)
Q Consensus 363 ~~Gi~VIl 370 (782)
++|+.|++
T Consensus 204 ~~gl~~~i 211 (213)
T PRK10076 204 RAGFQVTV 211 (213)
T ss_pred HcCCeEEe
Confidence 99999974
No 165
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=50.44 E-value=1.3e+02 Score=32.36 Aligned_cols=54 Identities=28% Similarity=0.239 Sum_probs=37.0
Q ss_pred CeEEEEEecccccCC--CCCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCcccc
Q 003977 254 DLVIYEMNVRAFTGD--ESSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFEF 307 (782)
Q Consensus 254 ~~vIYei~v~~Ft~~--~~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~ 307 (782)
+--||=|+|..=.+. +-+..+.-.+-....+.+.+..+.+|||.+|-|-||-+.
T Consensus 31 ~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LFgvp~~ 86 (330)
T COG0113 31 NDLIYPIFVVEGENIKEEIPSMPGVYRYSLDRLVEEAEELVDLGIPAVILFGVPDD 86 (330)
T ss_pred HHeeEeEEEecCCCCccccCCCCCceeccHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 556788887653221 111222233456788888899999999999999999854
No 166
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=50.19 E-value=1.4e+02 Score=32.21 Aligned_cols=53 Identities=30% Similarity=0.313 Sum_probs=36.3
Q ss_pred CeEEEEEecccccCCC--CCCCCCCCCCCHHHHHhhchHHHHcCCcEEEECCccc
Q 003977 254 DLVIYEMNVRAFTGDE--SSGLDPEIRGSYLGLIQKIPHLLELGINAVELLPVFE 306 (782)
Q Consensus 254 ~~vIYei~v~~Ft~~~--~~g~~~~~~G~~~gl~~~LdyLk~LGvt~I~L~Pi~e 306 (782)
+--||=|+|..=.+.+ -...+.-.+-+...+.+.+..+.++||++|-|-|+-+
T Consensus 21 ~dLI~PlFV~eg~~~~~~I~sMPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~ 75 (314)
T cd00384 21 DDLIYPLFVVEGIDEKEEISSMPGVYRLSVDSLVEEAEELADLGIRAVILFGIPE 75 (314)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4567777775422211 1223333455788999999999999999999999943
No 167
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=48.27 E-value=28 Score=39.41 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=37.5
Q ss_pred HhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhC
Q 003977 285 IQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGA 364 (782)
Q Consensus 285 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~ 364 (782)
.+-+.++|+.|+|+|-|.=.+.. + .+.+- ++|.+=.. ....=+.+.|+.|.+.
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~------------------~--~~~~~--~~p~~~~~-----~~~~~ld~~I~~a~~~ 128 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWA------------------L--QATDG--DNPYLIGL-----TQLKILDEAINWAKKL 128 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhh------------------h--hccCC--CCCCeecc-----hHHHHHHHHHHHHHhc
Confidence 45689999999999996322121 0 00000 23333211 0112467779999999
Q ss_pred CcEEEEee
Q 003977 365 GIEVILDV 372 (782)
Q Consensus 365 Gi~VIlDv 372 (782)
||+|++|+
T Consensus 129 gi~V~iD~ 136 (407)
T COG2730 129 GIYVLIDL 136 (407)
T ss_pred CeeEEEEe
Confidence 99999997
No 168
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=48.04 E-value=42 Score=35.71 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecc
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYN 375 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~N 375 (782)
+-.-++-+.|.+.||+|++|+-|.
T Consensus 104 ~k~ieiakRAk~~GmKVl~dFHYS 127 (403)
T COG3867 104 KKAIEIAKRAKNLGMKVLLDFHYS 127 (403)
T ss_pred HHHHHHHHHHHhcCcEEEeeccch
Confidence 344456678889999999999654
No 169
>PRK01060 endonuclease IV; Provisional
Probab=47.83 E-value=1.1e+02 Score=32.39 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=35.5
Q ss_pred HHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHh
Q 003977 283 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 362 (782)
Q Consensus 283 gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H 362 (782)
++.+.|+.++++|+++|+|.+--.. .+.. +.+ +. +++++|-+.+.
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~-------------------~~~~-------~~~-~~--------~~~~~lk~~~~ 57 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQ-------------------QWKR-------KPL-EE--------LNIEAFKAACE 57 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCC-------------------CCcC-------CCC-CH--------HHHHHHHHHHH
Confidence 3677899999999999999752111 1111 111 33 77888888999
Q ss_pred hCCcEE
Q 003977 363 GAGIEV 368 (782)
Q Consensus 363 ~~Gi~V 368 (782)
+.||++
T Consensus 58 ~~gl~~ 63 (281)
T PRK01060 58 KYGISP 63 (281)
T ss_pred HcCCCC
Confidence 999985
No 170
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=47.57 E-value=52 Score=36.34 Aligned_cols=62 Identities=19% Similarity=0.338 Sum_probs=43.1
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
++|..|+++|||.|.| .|..+++... -.+ .+-.+. ++..+.|+.+++.|
T Consensus 99 e~l~~l~~~GvnRiSi-GvQS~~~~~L---------------------~~l-gR~~~~--------~~~~~ai~~lr~~g 147 (350)
T PRK08446 99 AWLKGMKNLGVNRISF-GVQSFNEDKL---------------------KFL-GRIHSQ--------KQIIKAIENAKKAG 147 (350)
T ss_pred HHHHHHHHcCCCEEEE-ecccCCHHHH---------------------HHc-CCCCCH--------HHHHHHHHHHHHcC
Confidence 6899999999999985 4554422111 111 122233 88999999999999
Q ss_pred cE-EEEeeeccccc
Q 003977 366 IE-VILDVVYNHTN 378 (782)
Q Consensus 366 i~-VIlDvV~NH~~ 378 (782)
+. |-+|+.++..+
T Consensus 148 ~~~v~iDli~GlPg 161 (350)
T PRK08446 148 FENISIDLIYDTPL 161 (350)
T ss_pred CCEEEEEeecCCCC
Confidence 96 66999987644
No 171
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=47.49 E-value=17 Score=28.86 Aligned_cols=56 Identities=9% Similarity=0.094 Sum_probs=33.9
Q ss_pred EEEEEeCCCCcEEEEcCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCceEEEcCcEEEEE
Q 003977 719 IYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILL 779 (782)
Q Consensus 719 ~lVv~N~~~~~~~~~Lp~~~~~~~w~~l~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~~vl 779 (782)
++|++|.+...+++.+...-++..|.++........ .+.. ..-..+.++|.|..|.
T Consensus 1 L~v~iN~~~~~k~~~Vgt~~ag~~~~D~tGn~~~~v-tid~----dG~~~f~v~~~s~SVW 56 (57)
T PF09154_consen 1 LAVYINGSAGWKRMWVGTNWAGKTFYDYTGNSSETV-TIDE----DGWGEFPVPPGSVSVW 56 (57)
T ss_dssp EEEEEE-SSSEEEEEEEGGGTTEEEEETTSSSSSEE-EE-T----TSEEEEEE-TTEEEEE
T ss_pred CEEEEeCCCCeEEEEEccccCCCEEEEccCCCCCeE-EECC----CeEEEEEECCCEEEEe
Confidence 456669999999999887666667776654432110 0111 1224799999998875
No 172
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=47.17 E-value=69 Score=28.24 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=38.7
Q ss_pred EEEEEEcCC---CCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCC--CceEEEEEecC
Q 003977 121 INFAIFSQH---ATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRS--EVLYGYRVDGP 189 (782)
Q Consensus 121 ~~F~vwaP~---a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~--g~~Y~y~i~~~ 189 (782)
|+|+|-.|. -+.|.|++..+. .++|+.. ..++|.. ..+..|++.++- +.. ...|+|.+...
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~--LG~W~~~--~a~~l~~---~~~~~W~~~v~~-p~~~~~ieYKyvi~~~ 67 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPE--LGNWDPQ--KALKLSD---VGFPIWEADIDI-SKDSFPFEYKYIIANK 67 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHH--hCCCCcc--ccccCCC---CCCCcEEEEEEe-CCCCccEEEEEEEEeC
Confidence 789999985 346777765443 3467643 3556743 345699988862 322 46799988653
No 173
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=46.65 E-value=84 Score=36.36 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=44.1
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
.-|....|-|..+|+||+|+-=+.=-+.. |-|. |+...--...++=.++||
T Consensus 66 D~Yhry~EDI~Lm~elG~~~yRfSIsWsR----------------------------I~P~-G~~~~~N~~gl~~Y~~li 116 (477)
T PRK15014 66 DFYGHYKEDIKLFAEMGFKCFRTSIAWTR----------------------------IFPK-GDEAQPNEEGLKFYDDMF 116 (477)
T ss_pred CcccccHHHHHHHHHcCCCEEEeccccee----------------------------eccC-CCCCCCCHHHHHHHHHHH
Confidence 45667778899999999999776432221 1111 110000113457789999
Q ss_pred HHHhhCCcEEEEeee
Q 003977 359 KALHGAGIEVILDVV 373 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV 373 (782)
++|.++||+.|+.+.
T Consensus 117 d~l~~~GI~P~vTL~ 131 (477)
T PRK15014 117 DELLKYNIEPVITLS 131 (477)
T ss_pred HHHHHcCCEEEEEee
Confidence 999999999999884
No 174
>PLN02635 disproportionating enzyme
Probab=46.09 E-value=86 Score=36.76 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=45.3
Q ss_pred EecccccCCCCCCCCCCCCCCHHHHH-hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCC
Q 003977 260 MNVRAFTGDESSGLDPEIRGSYLGLI-QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMS 338 (782)
Q Consensus 260 i~v~~Ft~~~~~g~~~~~~G~~~gl~-~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~ 338 (782)
+|+-++-. +-|+ |||...+ +-++.+++.|.+.++|+|++...... + ..+=.|.+.+=|+.+|
T Consensus 34 l~l~SLps--~~GI-----GDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~------~----~~~SPYs~~S~fa~NP 96 (538)
T PLN02635 34 LHPTSLPG--PYGI-----GDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKG------G----EDGSPYSGQDANCGNT 96 (538)
T ss_pred EccccCCC--CCCC-----cchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC------C----CCCCCcccccccccCh
Confidence 55555542 2455 9998866 67999999999999999997752100 0 1222688888777777
Q ss_pred CCCC
Q 003977 339 RYAA 342 (782)
Q Consensus 339 ~yGt 342 (782)
-|=+
T Consensus 97 lyI~ 100 (538)
T PLN02635 97 LLIS 100 (538)
T ss_pred hhcC
Confidence 6654
No 175
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.97 E-value=66 Score=34.96 Aligned_cols=148 Identities=12% Similarity=0.003 Sum_probs=0.0
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCC----chHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcce
Q 003977 324 NTWGYSTINFFSPMSRYAAGGGGPL----KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 399 (782)
Q Consensus 324 ~~wGY~~~dy~a~d~~yGt~~~~p~----~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy 399 (782)
+.+|.-++....+++.....+..+. ..++.||++++++|+.|-++++-+ +|.+......... ..-+
T Consensus 45 gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~~~~~~~--------~~~~ 114 (327)
T cd02803 45 GGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQL--AHAGRQAQPNLTG--------GPPP 114 (327)
T ss_pred cCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHh--hCCCcCCCCcCCC--------CCcc
Q ss_pred eeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccc-------------cccccCCCCCCCCChHH
Q 003977 400 MVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLA-------------SVLCRGTDGSPLNAPPL 466 (782)
Q Consensus 400 ~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a-------------~~l~~~~~g~~~~~~~~ 466 (782)
..........+..+-.--.-+=.++.+.+.++++... +.|+||+-+.++ ..-..++.|...+...+
T Consensus 115 ~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~-~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~ 193 (327)
T cd02803 115 APSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAK-EAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARF 193 (327)
T ss_pred CCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHH
Q ss_pred HHHHHh---ccccCCceEE
Q 003977 467 IRAIAK---DAILSRCKII 482 (782)
Q Consensus 467 l~~i~~---~~~~~~~~li 482 (782)
+.++.+ +...+++.+.
T Consensus 194 ~~eii~avr~~~g~d~~i~ 212 (327)
T cd02803 194 LLEIVAAVREAVGPDFPVG 212 (327)
T ss_pred HHHHHHHHHHHcCCCceEE
No 176
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=45.91 E-value=40 Score=30.80 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=16.0
Q ss_pred HHHhhchHHHHcCCcEEEECC
Q 003977 283 GLIQKIPHLLELGINAVELLP 303 (782)
Q Consensus 283 gl~~~LdyLk~LGvt~I~L~P 303 (782)
.+.+-++.+.++|+.+|||.|
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-T
T ss_pred HHHHHHHHHHHcCCCEEEEEc
Confidence 345678999999999999987
No 177
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=44.12 E-value=63 Score=37.49 Aligned_cols=62 Identities=13% Similarity=0.247 Sum_probs=43.5
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
++|..|+++||+.|.|.| ..+++. -.-.+ .+-.|. +++.+.++.|++.|
T Consensus 270 e~L~~Lk~~Gv~RISIGv-QS~~d~---------------------vLk~i-gR~ht~--------e~v~~ai~~ar~~G 318 (488)
T PRK08207 270 EKLEVLKKYGVDRISINP-QTMNDE---------------------TLKAI-GRHHTV--------EDIIEKFHLAREMG 318 (488)
T ss_pred HHHHHHHhcCCCeEEEcC-CcCCHH---------------------HHHHh-CCCCCH--------HHHHHHHHHHHhCC
Confidence 679999999999999766 222111 11112 222343 89999999999999
Q ss_pred c-EEEEeeeccccc
Q 003977 366 I-EVILDVVYNHTN 378 (782)
Q Consensus 366 i-~VIlDvV~NH~~ 378 (782)
+ .|-+|+.++..+
T Consensus 319 f~~In~DLI~GLPg 332 (488)
T PRK08207 319 FDNINMDLIIGLPG 332 (488)
T ss_pred CCeEEEEEEeCCCC
Confidence 9 788999987643
No 178
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=43.99 E-value=75 Score=33.94 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=40.9
Q ss_pred HhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhC
Q 003977 285 IQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGA 364 (782)
Q Consensus 285 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~ 364 (782)
.+.+..||++|++.|.+. +|. +.+ -|-.+.+. .+ .++..+.++.+|+.
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E~-~~~--------------------~~~~i~~~-~s--------~~~~~~ai~~l~~~ 170 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LDT-SQE--------------------FYSNIIST-HT--------YDDRVDTLENAKKA 170 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--ccC-CHH--------------------HHhhccCC-CC--------HHHHHHHHHHHHHc
Confidence 356889999999999886 232 110 01112221 12 28888999999999
Q ss_pred CcEEEEeeeccc
Q 003977 365 GIEVILDVVYNH 376 (782)
Q Consensus 365 Gi~VIlDvV~NH 376 (782)
||+|...+++.+
T Consensus 171 Gi~v~~~~i~Gl 182 (296)
T TIGR00433 171 GLKVCSGGIFGL 182 (296)
T ss_pred CCEEEEeEEEeC
Confidence 999998888765
No 179
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=42.72 E-value=1.1e+02 Score=32.55 Aligned_cols=139 Identities=13% Similarity=0.046 Sum_probs=75.3
Q ss_pred HHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 003977 282 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 361 (782)
Q Consensus 282 ~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~ 361 (782)
+.+.+.+.-||+-|+|++-+==-=+ .+.--|...|- +....++- ....|.+.+|++|
T Consensus 77 k~~de~fk~ikdn~~Na~ViD~Kdd----------------~G~lty~s~d~--~~~~~~sv-----~~f~Di~~~iKka 133 (400)
T COG1306 77 KRLDELFKLIKDNNINAFVIDVKDD----------------YGELTYPSSDE--INKYTKSV-----NKFKDIEPVIKKA 133 (400)
T ss_pred hHHHHHHHHHHhCCCCEEEEEecCC----------------CccEeccccch--hhhhhhcc-----ccccccHHHHHHH
Confidence 4556678899999999986421111 12333444432 12222221 1247899999999
Q ss_pred hhCCcEEEEeeec-ccccCCCCCCCccccccCCCCCcceeeCCCCCccC-----cCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003977 362 HGAGIEVILDVVY-NHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN-----YAGCGNTLNCNHPVVMELILDSLRHW 435 (782)
Q Consensus 362 H~~Gi~VIlDvV~-NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~-----~~~~~~~ln~~~p~v~~~i~d~l~~W 435 (782)
+++||.+|.-+|. --+-- + .+.+.+...|-.-.+.-.+.| .+...-=.+--++.+++|=+.+++--
T Consensus 134 Ke~giY~IARiVvFKD~~l-------~-~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa 205 (400)
T COG1306 134 KENGIYAIARIVVFKDTIL-------A-KENPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEA 205 (400)
T ss_pred HhcCeEEEEEEEEeeeeeE-------E-eecCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHH
Confidence 9999999998874 22110 0 000000000000000000111 00000012334688999999999998
Q ss_pred HHhcCccEEEEcccccc
Q 003977 436 VVEYHVDGFRFDLASVL 452 (782)
Q Consensus 436 ~~e~gVDGFR~D~a~~l 452 (782)
+ ++|+|-+.||-+..-
T Consensus 206 ~-~fGfdEiQFDYIRFP 221 (400)
T COG1306 206 A-KFGFDEIQFDYIRFP 221 (400)
T ss_pred H-HcCccceeeeEEEcc
Confidence 8 899999999965543
No 180
>PLN02950 4-alpha-glucanotransferase
Probab=42.21 E-value=41 Score=42.01 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecc
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYN 375 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~N 375 (782)
.+++++.+.|+++||++|-|+.+.
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 568889999999999999999864
No 181
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=41.45 E-value=61 Score=36.92 Aligned_cols=62 Identities=18% Similarity=0.361 Sum_probs=41.9
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
++|..|+++||+.|.|- |..+++... ..+.... +. ++..+.|+.+++.|
T Consensus 142 e~l~~l~~~G~~rvslG-vQS~~~~~L---------------------~~l~R~~-~~--------~~~~~ai~~l~~~g 190 (430)
T PRK08208 142 EKLALLAARGVNRLSIG-VQSFHDSEL---------------------HALHRPQ-KR--------ADVHQALEWIRAAG 190 (430)
T ss_pred HHHHHHHHcCCCEEEEe-cccCCHHHH---------------------HHhCCCC-CH--------HHHHHHHHHHHHcC
Confidence 57999999999999864 333322111 0111111 22 88999999999999
Q ss_pred cEEE-Eeeeccccc
Q 003977 366 IEVI-LDVVYNHTN 378 (782)
Q Consensus 366 i~VI-lDvV~NH~~ 378 (782)
+.+| +|+.++.-+
T Consensus 191 ~~~i~~dlI~GlP~ 204 (430)
T PRK08208 191 FPILNIDLIYGIPG 204 (430)
T ss_pred CCeEEEEeecCCCC
Confidence 9865 999887644
No 182
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=41.31 E-value=46 Score=39.24 Aligned_cols=62 Identities=21% Similarity=0.402 Sum_probs=42.1
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
+.|..+|++|+|+|+--=.+...+ |.|. .| .|..+ -||.+||+.+|+.|
T Consensus 53 ~~i~k~k~~Gln~IqtYVfWn~He------p~~g-------~y----------~FsG~--------~DlvkFikl~~~~G 101 (649)
T KOG0496|consen 53 DLIKKAKAGGLNVIQTYVFWNLHE------PSPG-------KY----------DFSGR--------YDLVKFIKLIHKAG 101 (649)
T ss_pred HHHHHHHhcCCceeeeeeeccccc------CCCC-------cc----------cccch--------hHHHHHHHHHHHCC
Confidence 467889999999999644333211 1110 12 23444 89999999999999
Q ss_pred cEEEEeeeccccc
Q 003977 366 IEVILDVVYNHTN 378 (782)
Q Consensus 366 i~VIlDvV~NH~~ 378 (782)
+-|||=+=+=-++
T Consensus 102 Lyv~LRiGPyIca 114 (649)
T KOG0496|consen 102 LYVILRIGPYICA 114 (649)
T ss_pred eEEEecCCCeEEe
Confidence 9999987544444
No 183
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=41.19 E-value=49 Score=34.63 Aligned_cols=84 Identities=11% Similarity=0.126 Sum_probs=42.1
Q ss_pred HHhhchHHHHcCCcEEEECCccccchhhhhh---cCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 003977 284 LIQKIPHLLELGINAVELLPVFEFDEMEFQR---RRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKA 360 (782)
Q Consensus 284 l~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~---~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~ 360 (782)
+.+.|+.++++|++.|+|...+..+-..... ..+-. ...+.+...++..-.......+.......+.+++.|+.
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 93 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLE---HTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRY 93 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCc---EEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHH
Confidence 5667999999999999997643322111110 00000 00111111111100000000111122335779999999
Q ss_pred HhhCCcEEEE
Q 003977 361 LHGAGIEVIL 370 (782)
Q Consensus 361 ~H~~Gi~VIl 370 (782)
|++.|.++|.
T Consensus 94 a~~lga~~i~ 103 (258)
T PRK09997 94 ARALGNKKIN 103 (258)
T ss_pred HHHhCCCEEE
Confidence 9999999874
No 184
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=41.17 E-value=2e+02 Score=30.16 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=36.3
Q ss_pred HHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHh
Q 003977 283 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 362 (782)
Q Consensus 283 gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H 362 (782)
.+.+.++.++++|+++|+|.+.... . ...+.++ +. ++++++.+.+.
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~----------~--------~~~~~~~--------~~--------~~~~~l~~~l~ 62 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESD----------E--------RLARLDW--------SK--------EERLSLVKAIY 62 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcc----------c--------ccccccC--------CH--------HHHHHHHHHHH
Confidence 4567799999999999999642100 0 0111111 22 67889999999
Q ss_pred hCCcEEEE
Q 003977 363 GAGIEVIL 370 (782)
Q Consensus 363 ~~Gi~VIl 370 (782)
+.||+|..
T Consensus 63 ~~Gl~i~~ 70 (284)
T PRK13210 63 ETGVRIPS 70 (284)
T ss_pred HcCCCceE
Confidence 99999874
No 185
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=40.20 E-value=2.1e+02 Score=30.17 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=19.1
Q ss_pred HHHHhhchHHHHcCCcEEEECC
Q 003977 282 LGLIQKIPHLLELGINAVELLP 303 (782)
Q Consensus 282 ~gl~~~LdyLk~LGvt~I~L~P 303 (782)
..+.+.++.++++|++.|+|..
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~ 31 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFL 31 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEc
Confidence 4567789999999999999875
No 186
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=39.95 E-value=2e+02 Score=30.05 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=35.1
Q ss_pred HHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 003977 284 LIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 363 (782)
Q Consensus 284 l~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~ 363 (782)
+.+.++++.++|++.|+|...... .|... + -+. +++++|-+.+.+
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~-------------------~~~~~-------~-~~~--------~~~~~l~~~~~~ 56 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPR-------------------SWKGV-------R-LSE--------ETAEKFKEALKE 56 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCC-------------------CCCCC-------C-CCH--------HHHHHHHHHHHH
Confidence 557899999999999999653321 11111 1 122 677777788888
Q ss_pred CCcEEEE
Q 003977 364 AGIEVIL 370 (782)
Q Consensus 364 ~Gi~VIl 370 (782)
.||+|.+
T Consensus 57 ~gl~ls~ 63 (273)
T smart00518 57 NNIDVSV 63 (273)
T ss_pred cCCCEEE
Confidence 9998654
No 187
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=39.50 E-value=2.8e+02 Score=28.99 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=35.2
Q ss_pred HHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHh
Q 003977 283 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH 362 (782)
Q Consensus 283 gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H 362 (782)
.+.+.|+.++++|+++|+|.+-.. ..| . +.+ +. .++++|-+++.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~------------------------~~~-~--~~~-~~--------~~~~~l~~~~~ 57 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRP------------------------HAF-A--PDL-KA--------GGIKQIKALAQ 57 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCc------------------------ccc-c--ccc-Cc--------hHHHHHHHHHH
Confidence 367789999999999999853110 111 1 111 22 67888888999
Q ss_pred hCCcEEE
Q 003977 363 GAGIEVI 369 (782)
Q Consensus 363 ~~Gi~VI 369 (782)
+.||+|.
T Consensus 58 ~~gl~v~ 64 (275)
T PRK09856 58 TYQMPII 64 (275)
T ss_pred HcCCeEE
Confidence 9999984
No 188
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=39.20 E-value=1.8e+02 Score=32.54 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhhCCcEEEEeeecccc-cC
Q 003977 350 ASWEFKEMVKALHGAGIEVILDVVYNHT-NE 379 (782)
Q Consensus 350 ~~~elk~LV~~~H~~Gi~VIlDvV~NH~-~~ 379 (782)
.++.||+|++++|+.|-++++-+ +|. +.
T Consensus 81 ~i~~~k~l~davh~~G~~i~~QL--~H~~Gr 109 (382)
T cd02931 81 FIRTAKEMTERVHAYGTKIFLQL--TAGFGR 109 (382)
T ss_pred HhHHHHHHHHHHHHcCCEEEEEc--cCcCCC
Confidence 35789999999999999999877 575 54
No 189
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=38.67 E-value=1.4e+02 Score=32.96 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=43.5
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
++|+-|+++|+|.|.| +|..+++...+ .+ .+-.+. ++..+.|+.+++.|
T Consensus 104 e~l~~lk~~G~nrisi-GvQS~~d~vL~---------------------~l-~R~~~~--------~~~~~ai~~lr~~G 152 (353)
T PRK05904 104 SQINLLKKNKVNRISL-GVQSMNNNILK---------------------QL-NRTHTI--------QDSKEAINLLHKNG 152 (353)
T ss_pred HHHHHHHHcCCCEEEE-ecccCCHHHHH---------------------Hc-CCCCCH--------HHHHHHHHHHHHcC
Confidence 6799999999999875 45444221111 11 111232 89999999999999
Q ss_pred cE-EEEeeeccccc
Q 003977 366 IE-VILDVVYNHTN 378 (782)
Q Consensus 366 i~-VIlDvV~NH~~ 378 (782)
+. |-+|+.++.-+
T Consensus 153 ~~~v~~dlI~GlPg 166 (353)
T PRK05904 153 IYNISCDFLYCLPI 166 (353)
T ss_pred CCcEEEEEeecCCC
Confidence 97 88999988744
No 190
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=38.59 E-value=1e+02 Score=34.29 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=42.5
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
++|..|+++|||.|.|- |..+++... -.+.... +. ++..+-|+.+++.|
T Consensus 104 ~~l~~l~~~G~nrislG-vQS~~~~~L---------------------~~l~R~~-~~--------~~~~~ai~~~~~~g 152 (370)
T PRK06294 104 SYIRALALTGINRISIG-VQTFDDPLL---------------------KLLGRTH-SS--------SKAIDAVQECSEHG 152 (370)
T ss_pred HHHHHHHHCCCCEEEEc-cccCCHHHH---------------------HHcCCCC-CH--------HHHHHHHHHHHHcC
Confidence 57999999999999764 444422111 1111111 22 78889999999999
Q ss_pred cE-EEEeeeccccc
Q 003977 366 IE-VILDVVYNHTN 378 (782)
Q Consensus 366 i~-VIlDvV~NH~~ 378 (782)
+. |-+|+.++.-+
T Consensus 153 ~~~v~~Dli~GlPg 166 (370)
T PRK06294 153 FSNLSIDLIYGLPT 166 (370)
T ss_pred CCeEEEEeecCCCC
Confidence 96 88999987643
No 191
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=37.87 E-value=2.8e+02 Score=30.29 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceee------------CCCCCccCcCCCCCC
Q 003977 349 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMV------------DGTGQLLNYAGCGNT 416 (782)
Q Consensus 349 ~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~------------d~~g~~~~~~~~~~~ 416 (782)
..++.||+|++++|+.|-++++-+ +|.+. ...... .........+.....
T Consensus 74 ~~~~~~~~l~~~vh~~G~~~~~QL--~H~G~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~ 135 (336)
T cd02932 74 EQIEALKRIVDFIHSQGAKIGIQL--AHAGR----------------KASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFD 135 (336)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEc--cCCCc----------------CCCCCCCccccccccccccCCCceeCCCCCcCC
Q ss_pred CCCCC---------HHHHHHHHHHHHHHHHhcCccEEEEcc-------------ccccccCCCCCCCCChHHHHHHHh--
Q 003977 417 LNCNH---------PVVMELILDSLRHWVVEYHVDGFRFDL-------------ASVLCRGTDGSPLNAPPLIRAIAK-- 472 (782)
Q Consensus 417 ln~~~---------p~v~~~i~d~l~~W~~e~gVDGFR~D~-------------a~~l~~~~~g~~~~~~~~l~~i~~-- 472 (782)
..+.. ..+.+.+.++++... +.|+||+-+-+ ...-..++.|...+...++.++.+
T Consensus 136 ~~~~~p~~mt~~eI~~ii~~~~~aA~~a~-~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aI 214 (336)
T cd02932 136 EGWPTPRELTREEIAEVVDAFVAAARRAV-EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAV 214 (336)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHH
Q ss_pred -ccccCCceEE
Q 003977 473 -DAILSRCKII 482 (782)
Q Consensus 473 -~~~~~~~~li 482 (782)
+.+.+++.+.
T Consensus 215 R~~vG~d~~v~ 225 (336)
T cd02932 215 RAVWPEDKPLF 225 (336)
T ss_pred HHHcCCCceEE
No 192
>PLN02808 alpha-galactosidase
Probab=37.79 E-value=1.4e+02 Score=33.43 Aligned_cols=71 Identities=4% Similarity=-0.114 Sum_probs=44.3
Q ss_pred CCcEEEEEEEcCCCCeEEEEEeCCCCcEEEEcCC----CCCC--CCeEEEecCCCCCCCCCCCCCCCCCCceEEEcCcEE
Q 003977 703 DSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPP----PPPK--RQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSS 776 (782)
Q Consensus 703 ~~~vlaf~R~~~~~~~~lVv~N~~~~~~~~~Lp~----~~~~--~~w~~l~~t~~~~~~~~~~~~~~~~~~~i~l~p~s~ 776 (782)
+..+-++.+.-.++...++++|.++.++++.++. .... -+.++|....... ......+++|+|+++
T Consensus 307 ~~~~~vW~k~L~~g~~aVal~N~~~~~~~~~~~~~~lgl~~~~~~~vrDlWs~~~~g--------~~~~~~~~~v~pHg~ 378 (386)
T PLN02808 307 DGDLEVWAGPLSKKRVAVVLWNRGSSRATITARWSDIGLNSSAVVNARDLWAHSTQS--------SVKGQLSALVESHAC 378 (386)
T ss_pred cCCeEEEEEECCCCCEEEEEEECCCCCEEEEEEHHHhCCCCCCceEEEECCCCCccC--------cccceEEEEECCceE
Confidence 3467777776664678899999998887777552 1111 1344555322111 111234689999999
Q ss_pred EEEEe
Q 003977 777 ILLEA 781 (782)
Q Consensus 777 ~vl~~ 781 (782)
++|+.
T Consensus 379 ~~~rl 383 (386)
T PLN02808 379 KMYVL 383 (386)
T ss_pred EEEEE
Confidence 99975
No 193
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=37.76 E-value=1.4e+02 Score=34.35 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=66.0
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
.-|....|-|.-+|+||+++--+.=-... --|. |... + -...++=.++||
T Consensus 50 d~yhry~eDi~L~~~lG~~~yRfSIsWsR--------I~P~-------g~~~-----~----------N~~gl~~Y~~li 99 (467)
T TIGR01233 50 DFYHKYPVDLELAEEYGVNGIRISIAWSR--------IFPT-------GYGE-----V----------NEKGVEFYHKLF 99 (467)
T ss_pred chhhhHHHHHHHHHHcCCCEEEEecchhh--------ccCC-------CCCC-----c----------CHHHHHHHHHHH
Confidence 56788888999999999999876532221 0010 1100 1 113457789999
Q ss_pred HHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 003977 359 KALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVE 438 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e 438 (782)
++|.++||+.|+-+ .|.. .|. +.. + ..| +.|+++.+++.+-++.-+++
T Consensus 100 d~l~~~GI~P~VTL--~H~d-----lP~-----------~L~-~-------~GG------W~n~~~v~~F~~YA~~~f~~ 147 (467)
T TIGR01233 100 AECHKRHVEPFVTL--HHFD-----TPE-----------ALH-S-------NGD------FLNRENIEHFIDYAAFCFEE 147 (467)
T ss_pred HHHHHcCCEEEEec--cCCC-----CcH-----------HHH-H-------cCC------CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999766 4642 121 111 0 011 46788999999998888888
Q ss_pred cCcc
Q 003977 439 YHVD 442 (782)
Q Consensus 439 ~gVD 442 (782)
|| |
T Consensus 148 fg-d 150 (467)
T TIGR01233 148 FP-E 150 (467)
T ss_pred hC-C
Confidence 87 5
No 194
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=37.64 E-value=86 Score=27.12 Aligned_cols=61 Identities=15% Similarity=0.317 Sum_probs=35.2
Q ss_pred EEEEEEcCC--CCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEec
Q 003977 121 INFAIFSQH--ATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDG 188 (782)
Q Consensus 121 ~~F~vwaP~--a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~~ 188 (782)
++|+|-+.. .++|.|++..+. .++|+.. ..++|.. ..++.|++.+.-.......|+|.+..
T Consensus 3 v~F~v~~~t~~ge~l~v~G~~~~--lG~W~~~--~a~~l~~---~~~~~W~~~v~l~~~~~~eYKy~~~~ 65 (95)
T cd05808 3 VTFNVTATTVWGQNVYVVGNVPE--LGNWSPA--NAVALSA---ATYPVWSGTVDLPAGTAIEYKYIKKD 65 (95)
T ss_pred EEEEEEEECCCCCEEEEEeCcHH--hCCCChh--hCccCCC---CCCCCEEEEEEeCCCCeEEEEEEEEC
Confidence 567776543 466777775442 3467643 2456643 34459988775211235778887653
No 195
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.58 E-value=2.1e+02 Score=31.29 Aligned_cols=116 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCC--CCCCCCCHHHHHHH
Q 003977 351 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCG--NTLNCNHPVVMELI 428 (782)
Q Consensus 351 ~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~--~~ln~~~p~v~~~i 428 (782)
++.||+|++++|+.|-++++-+ +|.+... ..-+...+.+......... .....-+++..+.|
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~~--------------~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI 144 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL--NHPGRQS--------------PAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEI 144 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCcCC--------------CccCCCCCcCCCCCcCcccccccCCCCCcCCHHHH
Q ss_pred HHHHHHHHH------hcCccEEEEcccc-------------ccccCCCCCCCCChHHHHHHHh---ccccCCceEE
Q 003977 429 LDSLRHWVV------EYHVDGFRFDLAS-------------VLCRGTDGSPLNAPPLIRAIAK---DAILSRCKII 482 (782)
Q Consensus 429 ~d~l~~W~~------e~gVDGFR~D~a~-------------~l~~~~~g~~~~~~~~l~~i~~---~~~~~~~~li 482 (782)
.+.+..+.+ +.|+||+-+-+++ .-..++.|...+...++.++.+ +.+.+++.+.
T Consensus 145 ~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~ 220 (338)
T cd04733 145 EDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVG 220 (338)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEE
No 196
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=36.97 E-value=1.8e+02 Score=33.69 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=44.8
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
.-|....|-|+.+|+||+|+-=+.=-... |-|. |+.+.--...++=..+||
T Consensus 70 d~Yhry~eDi~Lm~~lG~~aYRfSIsWsR----------------------------I~P~-G~~~~~N~~gl~~Y~~lI 120 (478)
T PRK09593 70 DMYHHYKEDIALFAEMGFKTYRMSIAWTR----------------------------IFPK-GDELEPNEAGLQFYEDIF 120 (478)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEecchhh----------------------------cccC-CCCCCCCHHHHHHHHHHH
Confidence 56888889999999999999876543321 1111 110000113457789999
Q ss_pred HHHhhCCcEEEEeee
Q 003977 359 KALHGAGIEVILDVV 373 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV 373 (782)
++|+++||+.|+-+.
T Consensus 121 d~L~~~GI~P~VTL~ 135 (478)
T PRK09593 121 KECHKYGIEPLVTIT 135 (478)
T ss_pred HHHHHcCCEEEEEec
Confidence 999999999998774
No 197
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=36.68 E-value=1e+02 Score=33.23 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHH
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 431 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~ 431 (782)
..++.-|++|+++|++||+=+ + +-.+. + +- ....-++.+.++
T Consensus 54 ~~~~~~i~~lk~~G~kViiS~-----G--G~~g~------------~------------------~~-~~~~~~~~~~~a 95 (294)
T cd06543 54 GWIKSDIAALRAAGGDVIVSF-----G--GASGT------------P------------------LA-TSCTSADQLAAA 95 (294)
T ss_pred hhHHHHHHHHHHcCCeEEEEe-----c--CCCCC------------c------------------cc-cCcccHHHHHHH
Confidence 678889999999999998833 1 10000 0 00 022346667777
Q ss_pred HHHHHHhcCccEEEEccccc
Q 003977 432 LRHWVVEYHVDGFRFDLASV 451 (782)
Q Consensus 432 l~~W~~e~gVDGFR~D~a~~ 451 (782)
+.-.++.||+||+-||.-..
T Consensus 96 ~~~~i~~y~~dgiDfDiE~~ 115 (294)
T cd06543 96 YQKVIDAYGLTHLDFDIEGG 115 (294)
T ss_pred HHHHHHHhCCCeEEEeccCC
Confidence 77788899999999995443
No 198
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=36.23 E-value=1.9e+02 Score=32.00 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhCCcEEEEee
Q 003977 352 WEFKEMVKALHGAGIEVILDV 372 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDv 372 (782)
++|++.|+-||++|.++++=+
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~ 69 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAV 69 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 889999999999999997644
No 199
>PRK05660 HemN family oxidoreductase; Provisional
Probab=36.18 E-value=92 Score=34.83 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=42.3
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
++|..|+++|||.|.|-. ..+++ .-+-.+. +-.+. ++..+-|+.+++.|
T Consensus 108 e~l~~Lk~~Gv~risiGv-qS~~~---------------------~~L~~l~-r~~~~--------~~~~~ai~~~~~~G 156 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV-QSFSE---------------------EKLKRLG-RIHGP--------DEAKRAAKLAQGLG 156 (378)
T ss_pred HHHHHHHHcCCCEEEecc-CcCCH---------------------HHHHHhC-CCCCH--------HHHHHHHHHHHHcC
Confidence 689999999999999754 22211 1111121 22233 88888999999999
Q ss_pred cEE-EEeeeccccc
Q 003977 366 IEV-ILDVVYNHTN 378 (782)
Q Consensus 366 i~V-IlDvV~NH~~ 378 (782)
+.. -+|+.++..+
T Consensus 157 ~~~v~~dli~Glpg 170 (378)
T PRK05660 157 LRSFNLDLMHGLPD 170 (378)
T ss_pred CCeEEEEeecCCCC
Confidence 975 4999987644
No 200
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=36.17 E-value=1e+02 Score=27.20 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=35.3
Q ss_pred EEEEEEcCCC--CeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEec
Q 003977 121 INFAIFSQHA--TAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDG 188 (782)
Q Consensus 121 ~~F~vwaP~a--~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~~ 188 (782)
++|++-++.. +.|.|++..+. .+.|+.. ..++|.. .++++|++.+.-.......|+|.+..
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~--LG~W~~~--~a~~m~~---~~~~~W~~~v~lp~~~~veYKY~i~~ 64 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQ--LGNWNPS--KAKRMQW---NEGDLWTVDVGIPESVYIEYKYFVSN 64 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHH--HCCCCcc--ccCcccC---CCCCCEEEEEEECCCCcEEEEEEEEe
Confidence 5677766654 45666665432 3457643 3456632 34569988775211245789998853
No 201
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=35.92 E-value=2.6e+02 Score=31.16 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhhCCcEEEEeeecccccC
Q 003977 350 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 379 (782)
Q Consensus 350 ~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~ 379 (782)
.++.||+|++++|++|-++++-+. |.+.
T Consensus 81 ~i~~~~~l~~~vh~~G~~i~~QL~--H~G~ 108 (370)
T cd02929 81 DIRNLAAMTDAVHKHGALAGIELW--HGGA 108 (370)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecc--cCCC
Confidence 468999999999999999999875 8775
No 202
>PRK07094 biotin synthase; Provisional
Probab=35.28 E-value=79 Score=34.33 Aligned_cols=62 Identities=15% Similarity=-0.007 Sum_probs=42.3
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
+.+..|++.|++.|.+.. |.. ++.-|-.+.+. .+. ++..+.++.+|+.|
T Consensus 130 e~l~~Lk~aG~~~v~~gl--Es~--------------------~~~~~~~i~~~-~s~--------~~~~~~i~~l~~~G 178 (323)
T PRK07094 130 EEYKAWKEAGADRYLLRH--ETA--------------------DKELYAKLHPG-MSF--------ENRIACLKDLKELG 178 (323)
T ss_pred HHHHHHHHcCCCEEEecc--ccC--------------------CHHHHHHhCCC-CCH--------HHHHHHHHHHHHcC
Confidence 568899999999988432 221 11111222232 232 88999999999999
Q ss_pred cEEEEeeeccccc
Q 003977 366 IEVILDVVYNHTN 378 (782)
Q Consensus 366 i~VIlDvV~NH~~ 378 (782)
|.|-.++++.+-+
T Consensus 179 i~v~~~~iiGlpg 191 (323)
T PRK07094 179 YEVGSGFMVGLPG 191 (323)
T ss_pred CeecceEEEECCC
Confidence 9999999988744
No 203
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=35.25 E-value=1e+02 Score=32.64 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHH
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 431 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~ 431 (782)
.++.+-|..|+++||+|.--+.++--+ +.++.|++.
T Consensus 168 ~~y~dav~r~rkrgIkvc~HiI~GLPg--------------------------------------------E~~~~mleT 203 (312)
T COG1242 168 ACYVDAVKRLRKRGIKVCTHLINGLPG--------------------------------------------ETRDEMLET 203 (312)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeeCCCC--------------------------------------------CCHHHHHHH
Confidence 789999999999999998666544322 246788889
Q ss_pred HHHHHHhcCccEEEEcccccc
Q 003977 432 LRHWVVEYHVDGFRFDLASVL 452 (782)
Q Consensus 432 l~~W~~e~gVDGFR~D~a~~l 452 (782)
++.-. +.+|||+-+-....+
T Consensus 204 ak~v~-~~~v~GIKlH~Lhvv 223 (312)
T COG1242 204 AKIVA-ELGVDGIKLHPLHVV 223 (312)
T ss_pred HHHHH-hcCCceEEEEEEEEe
Confidence 99666 899999999866555
No 204
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=35.20 E-value=1e+02 Score=35.41 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=42.7
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
+.|..|+++|++.|.|- +..+++... -.+. +..+. ++..+.|+.+++.|
T Consensus 152 e~l~~l~~aG~~risiG-vqS~~~~~L---------------------~~l~-r~~~~--------~~~~~ai~~l~~~G 200 (453)
T PRK09249 152 EMLDALRELGFNRLSLG-VQDFDPEVQ---------------------KAVN-RIQPF--------EFTFALVEAARELG 200 (453)
T ss_pred HHHHHHHHcCCCEEEEC-CCCCCHHHH---------------------HHhC-CCCCH--------HHHHHHHHHHHHcC
Confidence 57999999999999874 333221111 1111 11233 88999999999999
Q ss_pred c-EEEEeeeccccc
Q 003977 366 I-EVILDVVYNHTN 378 (782)
Q Consensus 366 i-~VIlDvV~NH~~ 378 (782)
+ .|-+|+.++..+
T Consensus 201 ~~~v~~dli~GlPg 214 (453)
T PRK09249 201 FTSINIDLIYGLPK 214 (453)
T ss_pred CCcEEEEEEccCCC
Confidence 9 899999987744
No 205
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=35.10 E-value=93 Score=27.11 Aligned_cols=65 Identities=23% Similarity=0.431 Sum_probs=34.6
Q ss_pred cEEEEEEcCCC--CeEEEEEEeCCCccccCCCCCceeeeCCCCCC-CCCCEEEEEEeCCCC-CCceEEEEEecC
Q 003977 120 GINFAIFSQHA--TAVTLCLSLPKREKLDWQDGGMIELPLDPRVN-KTGDIWHICIEDLPR-SEVLYGYRVDGP 189 (782)
Q Consensus 120 g~~F~vwaP~a--~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~-~~G~vW~~~v~~~~~-~g~~Y~y~i~~~ 189 (782)
.|+|+|-+... ++|.|++..+ ..+.|+.. ..++|..... ....+|++.|. ++. ....|+|.+...
T Consensus 3 ~V~F~v~~~~~~ge~v~i~Gs~~--~LG~W~~~--~a~~l~~~~~~~~~~~W~~~v~-lp~~~~~eYKy~i~~~ 71 (96)
T PF00686_consen 3 SVTFRVNYQTQPGESVYIVGSCP--ELGNWDPK--KAVPLQWNEGTENYPIWSATVD-LPAGTPFEYKYVIKDA 71 (96)
T ss_dssp EEEEEESE---TTEEEEEEESSG--GGTTTSGG--GSBESEBESSSSTTTSEEEEEE-EETTSEEEEEEEEEET
T ss_pred EEEEEEEeECCCCCEEEEEECcH--HhCCCChH--hccccccccCCCCCCeEEEEEE-CcCCCEEEEEEEEEeC
Confidence 36788844333 3555655543 34567743 3456643111 12249999885 332 245788888654
No 206
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=34.74 E-value=1.4e+02 Score=34.21 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhCCcEEEEeee-cccccC
Q 003977 352 WEFKEMVKALHGAGIEVILDVV-YNHTNE 379 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV-~NH~~~ 379 (782)
+|.+++|+=|.-+||||+-.+- +.|+++
T Consensus 250 eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 250 EDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred HHHHHHHHHHHhccceeeecccCCccccc
Confidence 8999999999999999999984 899986
No 207
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=34.56 E-value=67 Score=32.28 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=27.7
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
..+..|+++|++.|=++|+--- ...+||+.+.++|-++|
T Consensus 139 tAiaml~dmG~~SiKffPm~Gl-----------------------------------------~~leE~~avAkA~a~~g 177 (218)
T PF07071_consen 139 TAIAMLKDMGGSSIKFFPMGGL-----------------------------------------KHLEELKAVAKACARNG 177 (218)
T ss_dssp HHHHHHHHTT--EEEE---TTT-----------------------------------------TTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCCeeeEeecCCc-----------------------------------------ccHHHHHHHHHHHHHcC
Confidence 3589999999999999996311 12388999999998888
Q ss_pred cEE
Q 003977 366 IEV 368 (782)
Q Consensus 366 i~V 368 (782)
|.+
T Consensus 178 ~~l 180 (218)
T PF07071_consen 178 FTL 180 (218)
T ss_dssp -EE
T ss_pred cee
Confidence 876
No 208
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=34.51 E-value=1.4e+02 Score=32.74 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHhhCCcEEEEeeecccccC
Q 003977 349 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 379 (782)
Q Consensus 349 ~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~ 379 (782)
.-++.||+|++++|+.|-++++-+ +|.+.
T Consensus 77 ~~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~ 105 (341)
T PF00724_consen 77 EQIPGLKKLADAVHAHGAKIIAQL--WHAGR 105 (341)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEE--E--GG
T ss_pred hHHHHHHHHHHHHHhcCccceeec--ccccc
Confidence 457899999999999999999987 67665
No 209
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=34.19 E-value=1.7e+02 Score=33.77 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=44.9
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
.-|.-..|-|.-+|+||+|+-=+.=-... --|. |... ++ ...++=.++||
T Consensus 51 d~Y~ry~eDi~L~~~lG~~~yRfSIsWsR--------I~P~-------G~g~-----vN----------~~gl~~Y~~li 100 (469)
T PRK13511 51 DFYHRYPEDLKLAEEFGVNGIRISIAWSR--------IFPD-------GYGE-----VN----------PKGVEYYHRLF 100 (469)
T ss_pred chhhhhHHHHHHHHHhCCCEEEeeccHhh--------cCcC-------CCCC-----cC----------HHHHHHHHHHH
Confidence 56788888999999999999876543322 0010 1100 11 13467799999
Q ss_pred HHHhhCCcEEEEeee
Q 003977 359 KALHGAGIEVILDVV 373 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV 373 (782)
++|.++||+.|+-+.
T Consensus 101 d~l~~~GI~P~VTL~ 115 (469)
T PRK13511 101 AECHKRHVEPFVTLH 115 (469)
T ss_pred HHHHHcCCEEEEEec
Confidence 999999999998874
No 210
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=33.66 E-value=1.2e+02 Score=27.48 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.2
Q ss_pred HHHHHhhchHHHHcCCcEEEECCcccc
Q 003977 281 YLGLIQKIPHLLELGINAVELLPVFEF 307 (782)
Q Consensus 281 ~~gl~~~LdyLk~LGvt~I~L~Pi~e~ 307 (782)
=..+..++..|++-|+++|+|..-...
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~ 77 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVK 77 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEec
Confidence 567788889999999999999998765
No 211
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=33.59 E-value=5.7e+02 Score=28.66 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=62.0
Q ss_pred CCCeEEEEEecccccCCCCCCCCCCCCCCHHHHHhh-----------chHHHHcCCcEEEECCccccchhhhhhcCCCCC
Q 003977 252 EKDLVIYEMNVRAFTGDESSGLDPEIRGSYLGLIQK-----------IPHLLELGINAVELLPVFEFDEMEFQRRRNPRD 320 (782)
Q Consensus 252 ~~~~vIYei~v~~Ft~~~~~g~~~~~~G~~~gl~~~-----------LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~ 320 (782)
.+...+|+-|+..|.+.+- |++...+++ ..-+|+.|...|. |+.++.+.-
T Consensus 21 ~e~~~~~~fh~nT~~dq~~--------f~~~~f~~~Ftae~wDP~eWar~fK~aGAKyvi--lvakHHDGF--------- 81 (430)
T COG3669 21 QEGSPFYHFHPNTYGDQEW--------FGGQEFPPRFTAENWDPREWARLFKEAGAKYVI--LVAKHHDGF--------- 81 (430)
T ss_pred ccCCceEEeccccccCccc--------ccccccccccCcccCCHHHHHHHHHHcCCcEEE--EeeeecCCe---------
Confidence 4678899999999876432 555555543 5678999998655 666662110
Q ss_pred CCCCcCCCCCCCCCC-CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCCCCCCCccc
Q 003977 321 HMVNTWGYSTINFFS-PMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT 388 (782)
Q Consensus 321 ~~~~~wGY~~~dy~a-~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~ 388 (782)
--| +++|.. ..++.|.+ -+=++++-+++.+.||+. -|++|-+ .|+|+.
T Consensus 82 ---aLw---~t~ys~wnsvk~GpK-------rDlvgela~Avr~qGL~F---Gvy~s~a----~h~W~~ 130 (430)
T COG3669 82 ---ALW---PTDYSVWNSVKRGPK-------RDLVGELAKAVREQGLRF---GVYLSGA----WHPWDF 130 (430)
T ss_pred ---eec---ccccccccccccCCc-------ccHHHHHHHHHHHcCCee---eEeeccC----cccccc
Confidence 011 223332 22445544 166788888889999876 4678866 577774
No 212
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=33.56 E-value=1.1e+02 Score=35.20 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=42.9
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
+.|..|+++|||.|.|-. ..+++. -.-.+.. -.+. ++..+.|+.+++.|
T Consensus 153 e~l~~L~~~G~~rvsiGv-QS~~~~---------------------vl~~l~R-~~~~--------~~~~~ai~~lr~~G 201 (453)
T PRK13347 153 EMLQALAALGFNRASFGV-QDFDPQ---------------------VQKAINR-IQPE--------EMVARAVELLRAAG 201 (453)
T ss_pred HHHHHHHHcCCCEEEECC-CCCCHH---------------------HHHHhCC-CCCH--------HHHHHHHHHHHhcC
Confidence 579999999999998754 322111 1111212 2233 88999999999999
Q ss_pred cE-EEEeeeccccc
Q 003977 366 IE-VILDVVYNHTN 378 (782)
Q Consensus 366 i~-VIlDvV~NH~~ 378 (782)
+. |-+|+.++..+
T Consensus 202 ~~~v~~dli~GlPg 215 (453)
T PRK13347 202 FESINFDLIYGLPH 215 (453)
T ss_pred CCcEEEeEEEeCCC
Confidence 97 88999987644
No 213
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=33.53 E-value=1.7e+02 Score=33.80 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=45.4
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
.-|....|-|.-+|+||+|+-=+.=-+.. |-|. |+.+.--...++=.++||
T Consensus 64 D~Yhry~eDi~Lm~~lG~~~yRfSIsWsR----------------------------I~P~-G~~~~~N~~gl~~Y~~li 114 (476)
T PRK09589 64 DFYHRYKEDIALFAEMGFKCFRTSIAWTR----------------------------IFPQ-GDELEPNEEGLQFYDDLF 114 (476)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEeccchhh----------------------------cCcC-CCCCCCCHHHHHHHHHHH
Confidence 46788888999999999999776532221 1111 110000113457789999
Q ss_pred HHHhhCCcEEEEeeecccc
Q 003977 359 KALHGAGIEVILDVVYNHT 377 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV~NH~ 377 (782)
++|.++||+.|+-+ .|.
T Consensus 115 d~L~~~GI~P~VTL--~H~ 131 (476)
T PRK09589 115 DECLKQGIEPVVTL--SHF 131 (476)
T ss_pred HHHHHcCCEEEEEe--cCC
Confidence 99999999999876 464
No 214
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=33.48 E-value=80 Score=38.41 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecc
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYN 375 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~N 375 (782)
.+++++-+.|+++||.+|-|+.+-
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg 297 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG 297 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 678888899999999999999764
No 215
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=33.39 E-value=94 Score=36.04 Aligned_cols=136 Identities=13% Similarity=0.163 Sum_probs=79.2
Q ss_pred CHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 003977 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 359 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~ 359 (782)
|-..|++.++..|+.||--..| |+....++.+ --=+..|++....+|++ .+..||+
T Consensus 307 t~e~ile~vk~akk~gvE~Fvl------DDGwfg~rnd--------d~~slGDWlv~seKfPs----------giE~li~ 362 (687)
T COG3345 307 TEEEILENVKEAKKFGVELFVL------DDGWFGGRND--------DLKSLGDWLVNSEKFPS----------GIEELIE 362 (687)
T ss_pred CHHHHHHHHHHHhhcCeEEEEE------ccccccccCc--------chhhhhceecchhhccc----------cHHHHHH
Confidence 5567888899999999644333 2222211111 01234577888888875 3888999
Q ss_pred HHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 003977 360 ALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 439 (782)
Q Consensus 360 ~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~ 439 (782)
+.|++|+.-=+=+-+--++.+ +..|. .+|+|... .+|.......-+--|+..+|.|..++.+-+-..+..-
T Consensus 363 ~I~e~Gl~fGIWlePemvs~d---Sdlfr-----qHPDWvvk-~~G~p~~~~Rnqyvl~~s~p~vv~~l~~~l~qll~~~ 433 (687)
T COG3345 363 AIAENGLIFGIWLEPEMVSED---SDLFR-----QHPDWVVK-VNGYPLMAGRNQYVLWLSNPIVVLDLSEDLVQLLLFH 433 (687)
T ss_pred HHHHcCCccceeecchhcccc---hHHHh-----hCCCeEEe-cCCccccccccchhhhccChHHHHHhhhHHHHHHHhh
Confidence 999999988777766555542 22221 23566655 3333322222233466777888777776654444344
Q ss_pred CccEEEEcc
Q 003977 440 HVDGFRFDL 448 (782)
Q Consensus 440 gVDGFR~D~ 448 (782)
-||=+|-|.
T Consensus 434 ~v~ylkwdm 442 (687)
T COG3345 434 LVSYLKWDM 442 (687)
T ss_pred hHHHHHHHh
Confidence 555555553
No 216
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=33.04 E-value=2.9e+02 Score=30.75 Aligned_cols=28 Identities=25% Similarity=0.346 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHhhCCcEEEEeeecccccC
Q 003977 350 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 379 (782)
Q Consensus 350 ~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~ 379 (782)
.++.||+|++++|+.|=++++-+ +|.+.
T Consensus 76 ~i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr 103 (361)
T cd04747 76 ALAGWKKVVDEVHAAGGKIAPQL--WHVGA 103 (361)
T ss_pred HHHHHHHHHHHHHhcCCEEEEec--cCCCC
Confidence 46899999999999999999887 67665
No 217
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=31.45 E-value=1.1e+02 Score=34.04 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=41.7
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
+.|..|+++|+|.|.|-. ..++... +-.+. +-.+. ++..+.|+.+++.|
T Consensus 101 e~l~~l~~~G~~rvsiGv-qS~~~~~---------------------l~~l~-r~~~~--------~~~~~~i~~l~~~g 149 (377)
T PRK08599 101 EKLQVLKDSGVNRISLGV-QTFNDEL---------------------LKKIG-RTHNE--------EDVYEAIANAKKAG 149 (377)
T ss_pred HHHHHHHHcCCCEEEEec-ccCCHHH---------------------HHHcC-CCCCH--------HHHHHHHHHHHHcC
Confidence 578999999999988643 3321111 11111 22232 89999999999999
Q ss_pred cE-EEEeeeccccc
Q 003977 366 IE-VILDVVYNHTN 378 (782)
Q Consensus 366 i~-VIlDvV~NH~~ 378 (782)
+. |-+|+.++.-+
T Consensus 150 ~~~v~~dli~GlPg 163 (377)
T PRK08599 150 FDNISIDLIYALPG 163 (377)
T ss_pred CCcEEEeeecCCCC
Confidence 98 66899887644
No 218
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=31.24 E-value=5.2e+02 Score=26.93 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=54.9
Q ss_pred CHHHHHhhchHHHHcCCcEEEECCccccchhhhhh---cCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHH
Q 003977 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQR---RRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKE 356 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~---~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~ 356 (782)
.-.+++.-+..|.++.=-.++++|+..-|....-. +.+| +|--...=|.++++...-....|....+.+++
T Consensus 54 g~~~al~fi~~L~~~~~~n~~I~P~vNPDGYe~~~~L~r~nP------~~~hHaaR~~A~g~D~~fr~~~~~~Es~~~~~ 127 (240)
T cd06232 54 GVVGALRAAEALAARPGAHFALIPLENPDGYALHERLRAEHP------RHMHHAARYTALGDDLEYREFPPFGEREARHQ 127 (240)
T ss_pred hHHHHHHHHHHHhccCCceEEEEEeeCCcHHHhhchhhccCc------ccccchhhhcccCCCcccccCCcchHHHHHHH
Confidence 34444555555655666678888987543222111 1222 12111112334333333222234433455666
Q ss_pred HHHHHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeC-CCCCc
Q 003977 357 MVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVD-GTGQL 407 (782)
Q Consensus 357 LV~~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d-~~g~~ 407 (782)
+++.. |..|.+|+ |-.. ++.|...+.+.++..|-.|. |+|-+
T Consensus 128 ~~~~~---~~~~hiDl---Heyp---~~E~~~~la~~~~~~~~~~~iP~Gf~ 170 (240)
T cd06232 128 ALAKS---GAQLHVNL---HGYP---AHEWTRPLSGYVPRGFESWTLPKGFF 170 (240)
T ss_pred HHHhh---CCcEEEEC---CCCC---cccccccccccCCCCCcCCccCCceE
Confidence 66655 78888886 5443 44666666655554444333 44444
No 219
>PRK09989 hypothetical protein; Provisional
Probab=30.30 E-value=88 Score=32.68 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=42.2
Q ss_pred HHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCC----CC-CCCCC--CCCCCCCchHHHHH
Q 003977 283 GLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFF----SP-MSRYA--AGGGGPLKASWEFK 355 (782)
Q Consensus 283 gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~----a~-d~~yG--t~~~~p~~~~~elk 355 (782)
.+.+.|+.++++|+++|+|.-....+..+....- ...|-.+..+- .+ .+.++ ..+......+++++
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l-------~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQL-------EQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADID 88 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHH-------HHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHH
Confidence 3567899999999999999554333211111000 00111111100 00 01111 11111223467799
Q ss_pred HHHHHHhhCCcEEE
Q 003977 356 EMVKALHGAGIEVI 369 (782)
Q Consensus 356 ~LV~~~H~~Gi~VI 369 (782)
+.|+.|++.|.++|
T Consensus 89 ~~i~~A~~lg~~~v 102 (258)
T PRK09989 89 LALEYALALNCEQV 102 (258)
T ss_pred HHHHHHHHhCcCEE
Confidence 99999999999877
No 220
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=30.00 E-value=1.8e+02 Score=24.92 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=35.1
Q ss_pred EEEEEEcC--CCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCC---CCceEEEEEec
Q 003977 121 INFAIFSQ--HATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPR---SEVLYGYRVDG 188 (782)
Q Consensus 121 ~~F~vwaP--~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~---~g~~Y~y~i~~ 188 (782)
+.|+|-+. --+.+.|++..+. .+.|+.. ..++|.. ...++.|++.++- +. ....|+|.+..
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~--LG~W~~~--~a~~m~~--~~~~~~W~~~v~~-~~~~~~~~~yKy~~~~ 67 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPE--LGNWDPA--KALRLNT--SNSYPLWTGEIPL-PAPEGQVIEYKYVIVD 67 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHH--hCCcChh--cCccccC--CCCCCcEEEEEEe-cCCCCCeEEEEEEEEC
Confidence 56666653 3356677665543 3467643 3456643 2225699988862 22 24678888854
No 221
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=29.88 E-value=1.3e+02 Score=34.65 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=41.8
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
+.|..|+++|++.|.|-. ..+++... -.+. +-.+. ++..+.|+.+++.|
T Consensus 152 e~l~~lk~~G~~risiGv-qS~~~~~l---------------------~~l~-r~~~~--------~~~~~ai~~l~~~G 200 (455)
T TIGR00538 152 DVIDALRDEGFNRLSFGV-QDFNKEVQ---------------------QAVN-RIQPE--------EMIFELMNHAREAG 200 (455)
T ss_pred HHHHHHHHcCCCEEEEcC-CCCCHHHH---------------------HHhC-CCCCH--------HHHHHHHHHHHhcC
Confidence 579999999999998753 22211110 0111 11233 88899999999999
Q ss_pred cE-EEEeeeccccc
Q 003977 366 IE-VILDVVYNHTN 378 (782)
Q Consensus 366 i~-VIlDvV~NH~~ 378 (782)
+. |-+|+.++..+
T Consensus 201 ~~~v~~dli~GlPg 214 (455)
T TIGR00538 201 FTSINIDLIYGLPK 214 (455)
T ss_pred CCcEEEeEEeeCCC
Confidence 96 77999887644
No 222
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=29.41 E-value=1.2e+02 Score=26.47 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=26.1
Q ss_pred CCcEEEEEEEcCCCCeEEEEE-eCCC---CcEEEEcCC--CCCCCCeEEEecCC
Q 003977 703 DSKFLAFTLHDNNGADIYLAF-NAHD---FFVKVSLPP--PPPKRQWFRVVDTN 750 (782)
Q Consensus 703 ~~~vlaf~R~~~~~~~~lVv~-N~~~---~~~~~~Lp~--~~~~~~w~~l~~t~ 750 (782)
++..+||+|-.. +..+++|+ |.+. ...++.++. ..++..+.+|+...
T Consensus 5 d~~~~a~rKG~~-g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~ 57 (91)
T PF09260_consen 5 DDSTIAFRKGPD-GSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCT 57 (91)
T ss_dssp ETTEEEEEESST-TT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTE
T ss_pred CCcEEEEEeCCC-CCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCC
Confidence 468999998554 44555555 5443 367788872 23456777777654
No 223
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=28.90 E-value=1.5e+02 Score=27.15 Aligned_cols=64 Identities=25% Similarity=0.463 Sum_probs=37.3
Q ss_pred cEEEEEEcC---CCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEec
Q 003977 120 GINFAIFSQ---HATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVDG 188 (782)
Q Consensus 120 g~~F~vwaP---~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~~ 188 (782)
-++|+|-+| ..+.|.|++..+. .++|+.. ..++|... +..++.|++.+.-.......|+|.+..
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~--LG~W~~~--~a~~l~~~-~~~~~~W~~~v~lp~~~~veYkY~~~~ 68 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPV--LGNWQPE--KAVPLEKE-DDDCNLWKASIELPRGVDFQYRYFVAV 68 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHH--hCCCCHH--hCeeCccC-CCcCCccEEEEEECCCCeEEEEEEEEE
Confidence 378999886 3345666665432 3467633 34567431 124458988775211235788888853
No 224
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=28.83 E-value=1.5e+02 Score=32.13 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=54.7
Q ss_pred CHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 003977 280 SYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVK 359 (782)
Q Consensus 280 ~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~ 359 (782)
++..=.+.+..+++.|.|+=.--|=-+ .|.-..+..+- |....++|++||+
T Consensus 13 s~e~R~~l~~f~~~~kmN~YiYAPKdD--------------------pyhr~~Wre~Y---------p~~el~~l~~L~~ 63 (306)
T PF07555_consen 13 SHEDRLDLIRFLGRYKMNTYIYAPKDD--------------------PYHRSKWREPY---------PEEELAELKELAD 63 (306)
T ss_dssp -HHHHHHHHHHHHHTT--EEEE--TT---------------------TTTTTTTTS------------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCceEEECCCCC--------------------hHHHhhhcccC---------CHHHHHHHHHHHH
Confidence 445555668888999999876665211 12222222221 2345689999999
Q ss_pred HHhhCCcEEEEeeecccccCCCCCCCccccccCCCCCcceeeCCCCCccCcCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 003977 360 ALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 439 (782)
Q Consensus 360 ~~H~~Gi~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~yy~~d~~g~~~~~~~~~~~ln~~~p~v~~~i~d~l~~W~~e~ 439 (782)
+|++.|++++.=+-+- .++.+..++..+.|+.=+.... +.
T Consensus 64 ~a~~~~V~Fv~aisPg---------------------------------------~~~~~s~~~d~~~L~~K~~ql~-~l 103 (306)
T PF07555_consen 64 AAKANGVDFVYAISPG---------------------------------------LDICYSSEEDFEALKAKFDQLY-DL 103 (306)
T ss_dssp HHHHTT-EEEEEEBGT---------------------------------------TT--TSHHHHHHHHHHHHHHHH-CT
T ss_pred HHHHcCCEEEEEECcc---------------------------------------cccccCcHHHHHHHHHHHHHHH-hc
Confidence 9999999887655322 2233344566666776666666 89
Q ss_pred CccEEEE
Q 003977 440 HVDGFRF 446 (782)
Q Consensus 440 gVDGFR~ 446 (782)
||.-|-+
T Consensus 104 Gvr~Fai 110 (306)
T PF07555_consen 104 GVRSFAI 110 (306)
T ss_dssp T--EEEE
T ss_pred CCCEEEE
Confidence 9998876
No 225
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=28.47 E-value=46 Score=35.75 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhCCcEEEEeee
Q 003977 351 SWEFKEMVKALHGAGIEVILDVV 373 (782)
Q Consensus 351 ~~elk~LV~~~H~~Gi~VIlDvV 373 (782)
.+|++++.+-||++||.|.||-.
T Consensus 144 ~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 144 LEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEET
T ss_pred HHHHHHHHHHHHhCceEEEEehh
Confidence 39999999999999999999974
No 226
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=28.28 E-value=65 Score=35.06 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 003977 420 NHPVVMELILDSLRHWVVEYHVDGFRFDL 448 (782)
Q Consensus 420 ~~p~v~~~i~d~l~~W~~e~gVDGFR~D~ 448 (782)
.++..|+.+++++..|++++|+||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 46788999999999999999999999994
No 227
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=28.23 E-value=1.4e+02 Score=33.76 Aligned_cols=62 Identities=24% Similarity=0.260 Sum_probs=43.1
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
++|..|+++|||.|.|- |..+++... -.+... -+. ++..+-++.+++.|
T Consensus 116 e~l~~l~~~GvnrislG-vQS~~d~~L---------------------~~l~R~-~~~--------~~~~~ai~~l~~~G 164 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLG-VQAFQDELL---------------------ALCGRS-HRV--------KDIFAAVDLIHQAG 164 (400)
T ss_pred HHHHHHHHCCCCEEEEE-cccCCHHHH---------------------HHhCCC-CCH--------HHHHHHHHHHHHcC
Confidence 57999999999999974 343322111 111111 232 88999999999999
Q ss_pred cE-EEEeeeccccc
Q 003977 366 IE-VILDVVYNHTN 378 (782)
Q Consensus 366 i~-VIlDvV~NH~~ 378 (782)
+. |-+|+.++.-+
T Consensus 165 ~~~v~~dlI~GlPg 178 (400)
T PRK07379 165 IENFSLDLISGLPH 178 (400)
T ss_pred CCeEEEEeecCCCC
Confidence 98 77999987644
No 228
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=28.12 E-value=1.5e+02 Score=33.17 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=42.9
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
++|..|+++|||.|.|- |..+++.... .+. +--+. ++..+.|+.+++.+
T Consensus 105 e~L~~l~~~GvnrislG-vQS~~d~vL~---------------------~l~-R~~~~--------~~~~~ai~~~~~~~ 153 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLG-VQALNDADLR---------------------FLG-RLHSV--------AEALAAIDLAREIF 153 (380)
T ss_pred HHHHHHHHcCCCEEEEe-cccCCHHHHH---------------------HcC-CCCCH--------HHHHHHHHHHHHhC
Confidence 67999999999999974 4443221111 111 11122 88889999999999
Q ss_pred cEEEEeeeccccc
Q 003977 366 IEVILDVVYNHTN 378 (782)
Q Consensus 366 i~VIlDvV~NH~~ 378 (782)
+.|-+|+.++--+
T Consensus 154 ~~v~~dli~GlPg 166 (380)
T PRK09057 154 PRVSFDLIYARPG 166 (380)
T ss_pred ccEEEEeecCCCC
Confidence 9999999987643
No 229
>PRK05967 cystathionine beta-lyase; Provisional
Probab=28.00 E-value=59 Score=36.64 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=25.5
Q ss_pred CCchHHHHHHHHHHHhhCCcEEEEeeeccc
Q 003977 347 PLKASWEFKEMVKALHGAGIEVILDVVYNH 376 (782)
Q Consensus 347 p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH 376 (782)
|.-.+.+++++++.||++|+-||+|-++..
T Consensus 161 P~l~v~dl~~I~~la~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 161 NTFEMQDIPAIAEAAHRHGAIVMMDNTWAT 190 (395)
T ss_pred CCCcHHHHHHHHHHHHHhCCEEEEECCccC
Confidence 333459999999999999999999999853
No 230
>PRK09028 cystathionine beta-lyase; Provisional
Probab=27.89 E-value=60 Score=36.54 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=25.2
Q ss_pred CCCchHHHHHHHHHHHhhCCcEEEEeeecc
Q 003977 346 GPLKASWEFKEMVKALHGAGIEVILDVVYN 375 (782)
Q Consensus 346 ~p~~~~~elk~LV~~~H~~Gi~VIlDvV~N 375 (782)
+|.-.+.+++++++.||++|+-||+|-++.
T Consensus 157 NPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 157 SITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 333345999999999999999999998874
No 231
>PLN02849 beta-glucosidase
Probab=27.81 E-value=2.1e+02 Score=33.46 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=44.1
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
.-|.-..|-|.-+|+||+++--+.=-+.. |-|. |+..- -...++=.++||
T Consensus 76 D~YhrY~eDI~Lm~~lG~~aYRfSIsWsR----------------------------I~P~-G~g~v-N~~gl~fY~~li 125 (503)
T PLN02849 76 DGYHKYKEDVKLMVETGLDAFRFSISWSR----------------------------LIPN-GRGSV-NPKGLQFYKNFI 125 (503)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEEeccHHh----------------------------cCcC-CCCCC-CHHHHHHHHHHH
Confidence 46888888999999999999776532221 1111 11000 113456789999
Q ss_pred HHHhhCCcEEEEeee
Q 003977 359 KALHGAGIEVILDVV 373 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV 373 (782)
++|+++||+-|+-+.
T Consensus 126 d~l~~~GI~P~VTL~ 140 (503)
T PLN02849 126 QELVKHGIEPHVTLF 140 (503)
T ss_pred HHHHHcCCeEEEeec
Confidence 999999999998764
No 232
>PLN02803 beta-amylase
Probab=27.78 E-value=4e+02 Score=31.05 Aligned_cols=86 Identities=13% Similarity=0.234 Sum_probs=55.4
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCCCCH---HHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCC
Q 003977 253 KDLVIYEMNVRAFTGDESSGLDPEIRGSY---LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYS 329 (782)
Q Consensus 253 ~~~vIYei~v~~Ft~~~~~g~~~~~~G~~---~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~ 329 (782)
.-.-+|=|.+-+.-..+ |++ ++|...|..||.+||..|.+==-+-..|. .+|. .++|
T Consensus 84 ~~vpvyVMlPLd~V~~~---------~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~-----~~p~---~YdW--- 143 (548)
T PLN02803 84 SGVPVFVMLPLDTVTMG---------GNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEK-----DGPM---KYNW--- 143 (548)
T ss_pred CceeEEEEeecceeccC---------CcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeecc-----CCCC---cCCc---
Confidence 34667777666654321 455 78889999999999999975321111110 0110 1222
Q ss_pred CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEeeecccccCC
Q 003977 330 TINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 380 (782)
Q Consensus 330 ~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~NH~~~~ 380 (782)
...++|++-+.+.||+|..=+-|.-++.+
T Consensus 144 ----------------------sgY~~l~~mvr~~GLKlq~vmSFHqCGGN 172 (548)
T PLN02803 144 ----------------------EGYAELVQMVQKHGLKLQVVMSFHQCGGN 172 (548)
T ss_pred ----------------------HHHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 56777888888899999988888777754
No 233
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=27.66 E-value=52 Score=36.33 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhCCcEEEEeeecccccCC
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYNHTNEA 380 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~NH~~~~ 380 (782)
+-|+++...||+.||-||.|=||.|+.-+
T Consensus 219 ~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 219 DHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred HHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 88999999999999999999999998753
No 234
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=27.63 E-value=52 Score=34.02 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=40.9
Q ss_pred HhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhC
Q 003977 285 IQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGA 364 (782)
Q Consensus 285 ~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~ 364 (782)
...+....++|.+.|-++.-+.... + ..|. ...+++++++++||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~--------~-----~~~~---------------------~~~~~i~~v~~~~~~~ 124 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALG--------S-----GNED---------------------EVIEEIAAVVEECHKY 124 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHH--------T-----THHH---------------------HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCceeeeeccccccc--------c-----ccHH---------------------HHHHHHHHHHHHHhcC
Confidence 4567888999999999887663310 0 0010 1248999999999999
Q ss_pred CcEEEEeeeccc
Q 003977 365 GIEVILDVVYNH 376 (782)
Q Consensus 365 Gi~VIlDvV~NH 376 (782)
||+||+...+..
T Consensus 125 gl~vIlE~~l~~ 136 (236)
T PF01791_consen 125 GLKVILEPYLRG 136 (236)
T ss_dssp EEEEEEEECECH
T ss_pred CcEEEEEEecCc
Confidence 999999966654
No 235
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=26.96 E-value=1.4e+02 Score=34.48 Aligned_cols=25 Identities=16% Similarity=0.140 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhCCcEEEEeeeccc
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYNH 376 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~NH 376 (782)
++..+.++.||+.||.|..++++..
T Consensus 323 ~~~~~~i~~~~~~Gi~v~~~~IiGl 347 (472)
T TIGR03471 323 EIARRFTRDCHKLGIKVHGTFILGL 347 (472)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEeC
Confidence 8899999999999999999999865
No 236
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=26.82 E-value=3e+02 Score=30.90 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=43.4
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
++|..|+++|||.|.|- |..+++.... .+ .+.-+. ++..+.|+.+++.+
T Consensus 112 e~l~~l~~~GvnRiSiG-vQS~~d~~L~---------------------~l-gR~h~~--------~~~~~ai~~~~~~~ 160 (390)
T PRK06582 112 EKFKAFKLAGINRVSIG-VQSLKEDDLK---------------------KL-GRTHDC--------MQAIKTIEAANTIF 160 (390)
T ss_pred HHHHHHHHCCCCEEEEE-CCcCCHHHHH---------------------Hc-CCCCCH--------HHHHHHHHHHHHhC
Confidence 68999999999999875 3333221111 11 122232 88888899999999
Q ss_pred cEEEEeeeccccc
Q 003977 366 IEVILDVVYNHTN 378 (782)
Q Consensus 366 i~VIlDvV~NH~~ 378 (782)
+.|-+|+.++.-+
T Consensus 161 ~~v~~DlI~GlPg 173 (390)
T PRK06582 161 PRVSFDLIYARSG 173 (390)
T ss_pred CcEEEEeecCCCC
Confidence 9999999998754
No 237
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=26.64 E-value=45 Score=35.53 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhCCcEEEEeee
Q 003977 352 WEFKEMVKALHGAGIEVILDVV 373 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV 373 (782)
+-+++||++|++- |.|+||+.
T Consensus 137 E~vR~~I~~A~kV-IAIVMD~F 157 (284)
T PF07894_consen 137 EVVRRMIQQAQKV-IAIVMDVF 157 (284)
T ss_pred HHHHHHHHHhcce-eEEEeecc
Confidence 7799999999998 99999984
No 238
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=25.45 E-value=1.9e+02 Score=32.18 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=42.0
Q ss_pred hhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCC
Q 003977 286 QKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG 365 (782)
Q Consensus 286 ~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~~G 365 (782)
+.|..|+++|+|.|.|-. ..+++... -.+ .+-.+. ++..+-|+.+++.|
T Consensus 100 e~l~~l~~~G~~rvsiGv-qS~~d~~L---------------------~~l-~R~~~~--------~~~~~ai~~l~~~g 148 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGL-QAWQNSLL---------------------KYL-GRIHTF--------EEFLENYKLARKLG 148 (374)
T ss_pred HHHHHHHHcCCCEEEEEC-ccCCHHHH---------------------HHc-CCCCCH--------HHHHHHHHHHHHcC
Confidence 579999999999988643 33321111 011 122233 88999999999999
Q ss_pred cE-EEEeeeccccc
Q 003977 366 IE-VILDVVYNHTN 378 (782)
Q Consensus 366 i~-VIlDvV~NH~~ 378 (782)
+. |-+|+.++..+
T Consensus 149 ~~~v~~dli~GlPg 162 (374)
T PRK05799 149 FNNINVDLMFGLPN 162 (374)
T ss_pred CCcEEEEeecCCCC
Confidence 97 77999887644
No 239
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=25.39 E-value=77 Score=34.50 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 003977 420 NHPVVMELILDSLRHWVVEYHVDGFRFDL 448 (782)
Q Consensus 420 ~~p~v~~~i~d~l~~W~~e~gVDGFR~D~ 448 (782)
.++..|+.+++++.-|++++|.||+-+|-
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDw 115 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDW 115 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECC
Confidence 45788999999999999999999999994
No 240
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=25.38 E-value=73 Score=34.57 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 003977 420 NHPVVMELILDSLRHWVVEYHVDGFRFDL 448 (782)
Q Consensus 420 ~~p~v~~~i~d~l~~W~~e~gVDGFR~D~ 448 (782)
.++..|+.+++++..+++++|+||+-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 46889999999999999999999999983
No 241
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=25.14 E-value=85 Score=34.13 Aligned_cols=60 Identities=17% Similarity=0.088 Sum_probs=41.5
Q ss_pred hhchHHHHcCCc-EEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCC-CCCCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 003977 286 QKIPHLLELGIN-AVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINF-FSPMSRYAAGGGGPLKASWEFKEMVKALHG 363 (782)
Q Consensus 286 ~~LdyLk~LGvt-~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy-~a~d~~yGt~~~~p~~~~~elk~LV~~~H~ 363 (782)
++|..|+++|++ .|.|-+ |+.+.. -. ..++..+ +. +++.+.++.+|+
T Consensus 118 e~L~~l~~aG~~~~v~iG~--ES~~d~--------------------~L~~~inKg~-t~--------~~~~~ai~~~~~ 166 (313)
T TIGR01210 118 EKLEELRKIGVNVEVAVGL--ETANDR--------------------IREKSINKGS-TF--------EDFIRAAELARK 166 (313)
T ss_pred HHHHHHHHcCCCEEEEEec--CcCCHH--------------------HHHHhhCCCC-CH--------HHHHHHHHHHHH
Confidence 678889999998 587654 221111 11 1222333 32 899999999999
Q ss_pred CCcEEEEeeeccc
Q 003977 364 AGIEVILDVVYNH 376 (782)
Q Consensus 364 ~Gi~VIlDvV~NH 376 (782)
.||.|.+++.++.
T Consensus 167 ~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 167 YGAGVKAYLLFKP 179 (313)
T ss_pred cCCcEEEEEEecC
Confidence 9999999999874
No 242
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=24.90 E-value=73 Score=34.32 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEc
Q 003977 420 NHPVVMELILDSLRHWVVEYHVDGFRFD 447 (782)
Q Consensus 420 ~~p~v~~~i~d~l~~W~~e~gVDGFR~D 447 (782)
.++..|+.+++++.-++++||+||+-+|
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiD 115 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLD 115 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeec
Confidence 5688899999999999999999999999
No 243
>PLN02814 beta-glucosidase
Probab=24.48 E-value=2.7e+02 Score=32.52 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=44.1
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
.-|.-..|-|+-+|+||+|+-=+.=-... --|. |-. .+ -...++=.++||
T Consensus 74 D~Yhry~EDI~L~k~lG~~ayRfSIsWsR--------I~P~-------G~g-----~~----------N~~Gl~fY~~lI 123 (504)
T PLN02814 74 DGYHKYKEDVKLMAEMGLESFRFSISWSR--------LIPN-------GRG-----LI----------NPKGLLFYKNLI 123 (504)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEEeccHhh--------cCcC-------CCC-----CC----------CHHHHHHHHHHH
Confidence 45788888999999999999776533221 0010 100 01 113457789999
Q ss_pred HHHhhCCcEEEEeee
Q 003977 359 KALHGAGIEVILDVV 373 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV 373 (782)
++|.++||+.|+-+.
T Consensus 124 d~l~~~GI~P~VTL~ 138 (504)
T PLN02814 124 KELRSHGIEPHVTLY 138 (504)
T ss_pred HHHHHcCCceEEEec
Confidence 999999999998763
No 244
>PLN02998 beta-glucosidase
Probab=23.78 E-value=2.3e+02 Score=32.98 Aligned_cols=65 Identities=12% Similarity=0.201 Sum_probs=44.0
Q ss_pred CCHHHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 003977 279 GSYLGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMV 358 (782)
Q Consensus 279 G~~~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV 358 (782)
.-|.-..|-|+.+|+||+|+-=+.=-+.. |-|. |+..- -...++=.++||
T Consensus 79 D~Yhry~EDi~lmk~lG~~~YRfSIsWsR----------------------------I~P~-G~g~v-N~~gl~~Y~~li 128 (497)
T PLN02998 79 DQYHKYKEDVKLMADMGLEAYRFSISWSR----------------------------LLPS-GRGPI-NPKGLQYYNNLI 128 (497)
T ss_pred cHHHhhHHHHHHHHHcCCCeEEeeccHHh----------------------------cCcC-CCCCc-CHHHHHHHHHHH
Confidence 46788888999999999999765432211 1111 11000 113467789999
Q ss_pred HHHhhCCcEEEEeee
Q 003977 359 KALHGAGIEVILDVV 373 (782)
Q Consensus 359 ~~~H~~Gi~VIlDvV 373 (782)
++|.++||+.|+-+.
T Consensus 129 d~L~~~GIeP~VTL~ 143 (497)
T PLN02998 129 DELITHGIQPHVTLH 143 (497)
T ss_pred HHHHHcCCceEEEec
Confidence 999999999998763
No 245
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=23.76 E-value=2.2e+02 Score=30.78 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhCCcEEEEeeeccc
Q 003977 352 WEFKEMVKALHGAGIEVILDVVYNH 376 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlDvV~NH 376 (782)
+++.+.|+.++++||.|..|+.++-
T Consensus 163 ~~~~~ai~~l~~~gi~v~~~lI~Gl 187 (302)
T TIGR01212 163 ACYVDAVKRARKRGIKVCSHVILGL 187 (302)
T ss_pred HHHHHHHHHHHHcCCEEEEeEEECC
Confidence 8999999999999999999998865
No 246
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=23.67 E-value=76 Score=29.26 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHhhCCcEEEEee
Q 003977 350 ASWEFKEMVKALHGAGIEVILDV 372 (782)
Q Consensus 350 ~~~elk~LV~~~H~~Gi~VIlDv 372 (782)
.+.|++.+-+.+.++||+|++|=
T Consensus 20 s~~d~k~~kk~m~~~gIkV~Idk 42 (132)
T PF15640_consen 20 SVKDIKNFKKEMGKRGIKVKIDK 42 (132)
T ss_pred eHHHHHHHHHHHHhCCcEEEECC
Confidence 35999999999999999999983
No 247
>PRK05939 hypothetical protein; Provisional
Probab=23.64 E-value=78 Score=35.65 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=23.7
Q ss_pred CCchHHHHHHHHHHHhhCCcEEEEeeec
Q 003977 347 PLKASWEFKEMVKALHGAGIEVILDVVY 374 (782)
Q Consensus 347 p~~~~~elk~LV~~~H~~Gi~VIlDvV~ 374 (782)
|...+.+++++++.||++|+.||+|-++
T Consensus 143 ptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 143 PGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 3334589999999999999999999865
No 248
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=23.44 E-value=81 Score=33.96 Aligned_cols=31 Identities=13% Similarity=0.330 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccEEEEccc
Q 003977 419 CNHPVVMELILDSLRHWVVEYHVDGFRFDLA 449 (782)
Q Consensus 419 ~~~p~v~~~i~d~l~~W~~e~gVDGFR~D~a 449 (782)
..++..|+.+++++..+++++|+||+-||--
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E 113 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFE 113 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecC
Confidence 3568899999999999999999999999954
No 249
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=22.65 E-value=64 Score=36.24 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=26.9
Q ss_pred CCCCCchHHHHHHHHHHHhhCCcEEEEeeec
Q 003977 344 GGGPLKASWEFKEMVKALHGAGIEVILDVVY 374 (782)
Q Consensus 344 ~~~p~~~~~elk~LV~~~H~~Gi~VIlDvV~ 374 (782)
|.+|.-++.|++++.+.||+.|+.||+|=.+
T Consensus 158 PsNP~l~v~DI~~i~~~A~~~g~~vvVDNTf 188 (396)
T COG0626 158 PSNPLLEVPDIPAIARLAKAYGALVVVDNTF 188 (396)
T ss_pred CCCcccccccHHHHHHHHHhcCCEEEEECCc
Confidence 6677788899999999999999999999544
No 250
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=22.52 E-value=83 Score=34.76 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 003977 420 NHPVVMELILDSLRHWVVEYHVDGFRFDL 448 (782)
Q Consensus 420 ~~p~v~~~i~d~l~~W~~e~gVDGFR~D~ 448 (782)
.++..|+.+++++..|++++++||+-+|-
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDw 120 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDW 120 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeee
Confidence 45788999999999999999999999993
No 251
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=22.50 E-value=87 Score=33.97 Aligned_cols=30 Identities=17% Similarity=0.426 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEEcccc
Q 003977 421 HPVVMELILDSLRHWVVEYHVDGFRFDLAS 450 (782)
Q Consensus 421 ~p~v~~~i~d~l~~W~~e~gVDGFR~D~a~ 450 (782)
++.-|+.+++.+.-|+++||+||+-||.-.
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~ 125 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEY 125 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESS
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeee
Confidence 467889999999999999999999999543
No 252
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.43 E-value=1.1e+02 Score=32.22 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=36.8
Q ss_pred HHHHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 003977 282 LGLIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL 361 (782)
Q Consensus 282 ~gl~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~ 361 (782)
..+.+.|+.++++|+++|+|.+ -+.. . +..+.++ +. +++++|.+.+
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~-~~~~----------------~-~~~~~~~--------~~--------~~~~~~~~~l 61 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSV-DETD----------------D-RLSRLDW--------SR--------EQRLALVNAI 61 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEec-CCcc----------------c-hhhccCC--------CH--------HHHHHHHHHH
Confidence 3467789999999999999953 1110 0 1111111 22 7889999999
Q ss_pred hhCCcEEE
Q 003977 362 HGAGIEVI 369 (782)
Q Consensus 362 H~~Gi~VI 369 (782)
.++||+|.
T Consensus 62 ~~~gl~i~ 69 (279)
T TIGR00542 62 IETGVRIP 69 (279)
T ss_pred HHcCCCce
Confidence 99999985
No 253
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.00 E-value=6.8e+02 Score=26.19 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=35.1
Q ss_pred HHhhchHHHHcCCcEEEECCccccchhhhhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 003977 284 LIQKIPHLLELGINAVELLPVFEFDEMEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG 363 (782)
Q Consensus 284 l~~~LdyLk~LGvt~I~L~Pi~e~~~~~~~~~~~~~~~~~~~wGY~~~dy~a~d~~yGt~~~~p~~~~~elk~LV~~~H~ 363 (782)
+.+.++-++++|+++|+|.+- +. +.+ ... ..+ +. ++++++.+.+.+
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~-~~------------------~~~-----~~~-~~~-~~--------~~~~~l~~~l~~ 68 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVD-ES------------------DER-----LAR-LDW-SR--------EQRLALVNALVE 68 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecC-cc------------------ccc-----hhc-cCC-CH--------HHHHHHHHHHHH
Confidence 556789999999999999531 11 000 000 011 22 778889999999
Q ss_pred CCcEEEE
Q 003977 364 AGIEVIL 370 (782)
Q Consensus 364 ~Gi~VIl 370 (782)
.||.|..
T Consensus 69 ~gl~i~~ 75 (283)
T PRK13209 69 TGFRVNS 75 (283)
T ss_pred cCCceeE
Confidence 9999863
No 254
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=21.57 E-value=93 Score=31.14 Aligned_cols=94 Identities=27% Similarity=0.543 Sum_probs=48.3
Q ss_pred cchhhccccccccccCCcccCCCCCCCCccEEeCCcEEEEEEcCCCCeEEEEEEeCCCccccCCCCCceeeeCCCCCCCC
Q 003977 85 ERVLEEESPRVSETTLPLKTSQGQAFPIGVSEVENGINFAIFSQHATAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKT 164 (782)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lGa~~~~~g~~F~vwaP~a~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 164 (782)
+.+++.-.+++.+...+.+...|...+.-|.+-.+|- .+-.+.|+.-..++ ..| .+++|.+. .
T Consensus 4 Rv~Ie~V~P~Vd~Grfp~KrvvGe~v~V~Adif~DGH-------D~l~A~l~~r~~~~--~~w-----~~vpM~~~---g 66 (187)
T PF11896_consen 4 RVVIENVRPEVDGGRFPAKRVVGEPVPVSADIFRDGH-------DALAAELLWRHPGE--REW-----QEVPMTPL---G 66 (187)
T ss_dssp SS-EEEEES-BGGGTB-EEEETT-EEEEEEEE--SSS-------S-EEEEEEEE-TTS---B---------B-EES---T
T ss_pred cEEEeecccccCCCCccceeecCCeEEEEEEEEecCC-------CcEEEEEEEECCCC--Ccc-----eeeccccC---C
Confidence 4456666888888888888888887766665533331 22234454433321 123 36677542 3
Q ss_pred CCEEEEEEeCCCCCCceEEEEEecCCCCCCCccccCceeeeCcccccc
Q 003977 165 GDIWHICIEDLPRSEVLYGYRVDGPRDWHQGHRFDSSIVLIDPYAKLV 212 (782)
Q Consensus 165 G~vW~~~v~~~~~~g~~Y~y~i~~~~~~~~~~~~~~~~~~~DPyA~~~ 212 (782)
.|.|+..++- . .--.|.|+|.. | .|||+.-.
T Consensus 67 nDrW~a~f~~-~-~~G~~~f~VeA---W------------~D~faTW~ 97 (187)
T PF11896_consen 67 NDRWEASFTP-D-RPGRYEFRVEA---W------------VDHFATWR 97 (187)
T ss_dssp S-EEEEEEE----SSEEEEEEEEE---E------------E-HHHHHH
T ss_pred CCEEEEEEEC-C-CceeEEEEEEE---E------------eccHHHHH
Confidence 3599998872 3 23479999985 4 79997554
No 255
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.53 E-value=1.3e+02 Score=30.81 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.1
Q ss_pred HhhchHHHHcCCcEEEECCcc
Q 003977 285 IQKIPHLLELGINAVELLPVF 305 (782)
Q Consensus 285 ~~~LdyLk~LGvt~I~L~Pi~ 305 (782)
...+..||++|.+.|=++|+-
T Consensus 138 etAiaml~dmG~~SiKffPM~ 158 (236)
T TIGR03581 138 ETAIAMLKDMGGSSVKFFPMG 158 (236)
T ss_pred HHHHHHHHHcCCCeeeEeecC
Confidence 345899999999999999974
No 256
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=21.46 E-value=3.3e+02 Score=24.08 Aligned_cols=65 Identities=12% Similarity=0.301 Sum_probs=35.5
Q ss_pred cEEEEEEcCCC--CeEEEEEEeCCCccccCCCCCceeeeCCCCC-CCCCCEEEEEEeCCCCCCceEEEEEec
Q 003977 120 GINFAIFSQHA--TAVTLCLSLPKREKLDWQDGGMIELPLDPRV-NKTGDIWHICIEDLPRSEVLYGYRVDG 188 (782)
Q Consensus 120 g~~F~vwaP~a--~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~G~vW~~~v~~~~~~g~~Y~y~i~~ 188 (782)
.++|++-++.. +.|.|++..+. .++|+.. ..++|.... ...+++|.+.+.-.......|+|.+..
T Consensus 8 ~V~F~i~~~t~~Ge~l~v~G~~~~--LG~W~~~--~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~~~ 75 (106)
T cd05811 8 AVTFNERVTTSYGENIKIVGSIPQ--LGNWDTS--SAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIRKE 75 (106)
T ss_pred EEEEEEeeEcCCCCeEEEEeCcHH--HCCCChh--hCcccccccCccCCCcEEEEEEeCCCCcEEEEEEEEc
Confidence 37787755543 45666655432 3467643 345563211 123468998876211235789998754
No 257
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.33 E-value=2.4e+02 Score=31.26 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=16.6
Q ss_pred HHHHHHHHhhCCcEEEEeee
Q 003977 354 FKEMVKALHGAGIEVILDVV 373 (782)
Q Consensus 354 lk~LV~~~H~~Gi~VIlDvV 373 (782)
...||++||++||+|+.=-|
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTv 299 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTL 299 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEe
Confidence 46899999999999976544
No 258
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=21.28 E-value=1.7e+02 Score=30.92 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=14.2
Q ss_pred HHHHHHHhhC-CcEEEE
Q 003977 355 KEMVKALHGA-GIEVIL 370 (782)
Q Consensus 355 k~LV~~~H~~-Gi~VIl 370 (782)
+++|++||++ ||+|..
T Consensus 219 ~~~V~~~h~~~gl~V~~ 235 (263)
T cd08580 219 PAAVDCFRRNSKVKIVL 235 (263)
T ss_pred HHHHHHHHhcCCcEEEE
Confidence 5789999999 999965
No 259
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=21.24 E-value=3.1e+02 Score=23.75 Aligned_cols=58 Identities=12% Similarity=0.242 Sum_probs=34.2
Q ss_pred EEEEEEcCCC---CeEEEEEEeCCCccccCCCCCceeeeCCCCCCCCCCEEEEEEeCCCCCCceEEEEEe
Q 003977 121 INFAIFSQHA---TAVTLCLSLPKREKLDWQDGGMIELPLDPRVNKTGDIWHICIEDLPRSEVLYGYRVD 187 (782)
Q Consensus 121 ~~F~vwaP~a---~~v~L~l~~~~~~~~~~~~~~~~~~~l~~~~~~~G~vW~~~v~~~~~~g~~Y~y~i~ 187 (782)
++|+|-+|+- +.+.|++..+. .++|+. .++|.. .++..|++.+.-.......|+|.+.
T Consensus 3 v~F~v~~~t~~~~e~l~v~G~~~~--LG~W~~----~~~l~~---~~~~~W~~~v~lp~~~~ieYky~~~ 63 (95)
T cd05813 3 VTFRVHYITHSDAQLVAVTGDHEE--LGSWHS----YIPLQY---VKDGFWSASVSLPVDTHVEWKFVLV 63 (95)
T ss_pred EEEEEEeeeCCCCeEEEEEcChHH--HCCCCc----cccCcC---CCCCCEEEEEEecCCCcEEEEEEEE
Confidence 7899988754 33456655443 346763 356642 2345898777521223578888774
No 260
>PRK15447 putative protease; Provisional
Probab=20.79 E-value=2e+02 Score=31.10 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhCCcEEEEe
Q 003977 352 WEFKEMVKALHGAGIEVILD 371 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIlD 371 (782)
+++++.|+.||++|.+|++=
T Consensus 48 ~~l~e~v~~~~~~gkkvyva 67 (301)
T PRK15447 48 GDWLELAERLAAAGKEVVLS 67 (301)
T ss_pred HHHHHHHHHHHHcCCEEEEE
Confidence 99999999999999999883
No 261
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=20.63 E-value=2.3e+02 Score=31.37 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhCCcEEEE
Q 003977 352 WEFKEMVKALHGAGIEVIL 370 (782)
Q Consensus 352 ~elk~LV~~~H~~Gi~VIl 370 (782)
+++++|.+.+.++||.|.+
T Consensus 306 e~v~~f~~~L~~~Gi~vti 324 (347)
T PRK14453 306 GQIKQFCSTLKSAGISVTV 324 (347)
T ss_pred HHHHHHHHHHHHCCCcEEE
Confidence 8899999999999999863
No 262
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=20.44 E-value=1.2e+02 Score=33.03 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=15.5
Q ss_pred HHHHHHhhCCcEEEEeeeccc
Q 003977 356 EMVKALHGAGIEVILDVVYNH 376 (782)
Q Consensus 356 ~LV~~~H~~Gi~VIlDvV~NH 376 (782)
..|++||++|++|+==+.+.+
T Consensus 46 ~widaAHrnGV~vLGTiife~ 66 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEW 66 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEE
T ss_pred hhHHHHHhcCceEEEEEEecC
Confidence 478999999999988777743
No 263
>PRK07050 cystathionine beta-lyase; Provisional
Probab=20.38 E-value=99 Score=34.76 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhCCcEEEEeeeccc
Q 003977 351 SWEFKEMVKALHGAGIEVILDVVYNH 376 (782)
Q Consensus 351 ~~elk~LV~~~H~~Gi~VIlDvV~NH 376 (782)
+.+++++++.||++|+.||+|-.+..
T Consensus 166 ~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 166 VPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred HhhHHHHHHHHHHcCCEEEEECCccc
Confidence 48999999999999999999999765
No 264
>PF09083 DUF1923: Domain of unknown function (DUF1923); InterPro: IPR015167 This domain is found in maltosyltransferases, adopting a secondary structure that consists of eight antiparallel beta-strands forming an open-sided 'jelly roll' Greek key beta-barrel. Their exact function is, as yet, unknown []. ; PDB: 1GJW_A 1GJU_A.
Probab=20.13 E-value=2.4e+02 Score=22.00 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCcEEEEEEEcCCCCeEEEEEeCCCCcEEEE
Q 003977 703 DSKFLAFTLHDNNGADIYLAFNAHDFFVKVS 733 (782)
Q Consensus 703 ~~~vlaf~R~~~~~~~~lVv~N~~~~~~~~~ 733 (782)
+..++-|+...+ ++.++++.|.+.++..++
T Consensus 8 ~~dlv~ysyek~-g~k~viaanvgke~ke~s 37 (64)
T PF09083_consen 8 NKDLVMYSYEKN-GQKIVIAANVGKEPKEIS 37 (64)
T ss_dssp BTTEEEEEEEET-TEEEEEEEE-SSS-EEEE
T ss_pred ccceEEEEeecC-CcEEEEEeccCCCccccc
Confidence 456777777666 789999999999987765
Done!