Query 003979
Match_columns 782
No_of_seqs 309 out of 2156
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 15:23:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 3E-128 6E-133 1146.0 78.8 743 10-773 24-796 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 5E-102 1E-106 906.7 52.7 728 9-774 3-767 (769)
3 PRK03562 glutathione-regulated 100.0 8.3E-45 1.8E-49 421.9 41.9 361 28-423 4-377 (621)
4 PRK03659 glutathione-regulated 100.0 3.8E-43 8.2E-48 407.6 48.1 360 30-423 6-374 (601)
5 COG0475 KefB Kef-type K+ trans 100.0 1.2E-43 2.6E-48 391.0 40.4 367 28-423 5-382 (397)
6 PRK10669 putative cation:proto 100.0 9.9E-44 2.1E-48 412.0 41.4 369 30-423 7-386 (558)
7 PRK05326 potassium/proton anti 100.0 9.1E-38 2E-42 361.8 34.7 371 26-423 3-385 (562)
8 TIGR00932 2a37 transporter, mo 100.0 6.1E-35 1.3E-39 309.1 32.1 271 39-338 2-273 (273)
9 COG4651 RosB Kef-type K+ trans 100.0 7.6E-34 1.7E-38 282.0 27.2 366 33-423 10-385 (408)
10 PF00999 Na_H_Exchanger: Sodiu 100.0 1.2E-37 2.7E-42 346.1 -6.2 362 36-422 3-375 (380)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 3.3E-26 7.2E-31 261.7 37.6 365 16-397 2-377 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 7.7E-26 1.7E-30 258.8 35.0 358 35-423 4-406 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 4.2E-23 9.2E-28 229.7 37.4 346 29-397 6-363 (429)
14 PRK11175 universal stress prot 99.9 6.6E-25 1.4E-29 236.6 20.7 286 433-771 4-300 (305)
15 COG3263 NhaP-type Na+/H+ and K 99.9 4.6E-23 9.9E-28 215.2 27.5 368 26-423 4-383 (574)
16 TIGR00840 b_cpa1 sodium/hydrog 99.9 6.4E-22 1.4E-26 226.2 32.8 368 39-423 19-414 (559)
17 KOG4505 Na+/H+ antiporter [Ino 99.8 7.9E-17 1.7E-21 163.1 21.8 338 35-392 20-372 (467)
18 KOG1965 Sodium/hydrogen exchan 99.7 3.6E-16 7.9E-21 171.8 19.9 374 30-423 36-452 (575)
19 PRK14853 nhaA pH-dependent sod 99.6 2.1E-13 4.6E-18 148.0 26.4 260 88-391 61-350 (423)
20 cd01988 Na_H_Antiporter_C The 99.5 1.1E-13 2.3E-18 129.5 13.3 131 434-590 1-131 (132)
21 cd01989 STK_N The N-terminal d 99.5 4.8E-13 1.1E-17 127.7 12.2 139 613-771 1-145 (146)
22 PRK15456 universal stress prot 99.4 6.3E-13 1.4E-17 126.3 12.3 137 611-770 2-142 (142)
23 PRK15005 universal stress prot 99.4 1E-12 2.2E-17 125.0 12.4 138 611-770 2-144 (144)
24 PRK09982 universal stress prot 99.4 9.1E-13 2E-17 125.2 10.3 135 611-770 3-138 (142)
25 PRK15118 universal stress glob 99.4 1.9E-12 4.1E-17 123.3 11.0 141 610-774 2-142 (144)
26 PRK15456 universal stress prot 99.4 2.5E-12 5.5E-17 122.1 10.3 134 433-590 3-141 (142)
27 cd01989 STK_N The N-terminal d 99.4 4.4E-12 9.5E-17 121.0 11.3 137 434-590 1-143 (146)
28 PRK15005 universal stress prot 99.3 5.7E-12 1.2E-16 119.9 10.9 135 434-590 4-143 (144)
29 TIGR00773 NhaA Na+/H+ antiport 99.3 4.1E-11 8.8E-16 127.9 18.4 259 88-391 51-331 (373)
30 cd01988 Na_H_Antiporter_C The 99.3 1.8E-11 4E-16 114.3 13.2 129 613-770 1-132 (132)
31 cd01987 USP_OKCHK USP domain i 99.3 6.7E-12 1.5E-16 116.2 10.0 121 613-769 1-123 (124)
32 PRK15118 universal stress glob 99.3 8.4E-12 1.8E-16 118.8 10.8 135 433-591 4-138 (144)
33 PRK10116 universal stress prot 99.3 9.2E-12 2E-16 118.2 10.6 137 610-770 2-138 (142)
34 PF00582 Usp: Universal stress 99.3 1.6E-11 3.4E-16 114.9 10.6 134 611-770 2-140 (140)
35 PRK09982 universal stress prot 99.3 1.2E-11 2.7E-16 117.4 9.6 132 434-590 5-137 (142)
36 cd01987 USP_OKCHK USP domain i 99.2 1.1E-10 2.3E-15 108.1 11.0 122 434-590 1-123 (124)
37 KOG1966 Sodium/hydrogen exchan 99.2 2.1E-11 4.5E-16 133.8 6.6 355 41-423 54-446 (670)
38 PRK10116 universal stress prot 99.2 1.7E-10 3.7E-15 109.5 12.0 135 433-591 4-138 (142)
39 PF00582 Usp: Universal stress 99.1 1.7E-10 3.6E-15 107.9 9.6 132 434-590 4-139 (140)
40 PRK11175 universal stress prot 99.1 1.3E-10 2.9E-15 125.2 10.2 143 610-772 2-147 (305)
41 cd00293 USP_Like Usp: Universa 98.9 9.9E-09 2.1E-13 94.7 11.3 128 613-769 1-130 (130)
42 PRK14856 nhaA pH-dependent sod 98.9 6.9E-08 1.5E-12 105.0 18.1 257 88-391 67-385 (438)
43 COG0589 UspA Universal stress 98.9 1.6E-08 3.4E-13 96.7 11.6 145 610-772 4-153 (154)
44 cd00293 USP_Like Usp: Universa 98.9 2.4E-08 5.1E-13 92.1 12.1 127 434-590 1-130 (130)
45 PRK09560 nhaA pH-dependent sod 98.8 2.4E-07 5.2E-12 99.4 17.6 258 88-391 58-340 (389)
46 PRK14854 nhaA pH-dependent sod 98.8 4.3E-07 9.3E-12 96.9 18.4 260 88-391 55-335 (383)
47 PRK09561 nhaA pH-dependent sod 98.7 8.3E-07 1.8E-11 95.1 20.3 257 89-391 59-338 (388)
48 PRK14855 nhaA pH-dependent sod 98.7 1E-06 2.2E-11 95.7 20.1 254 88-391 62-370 (423)
49 COG0589 UspA Universal stress 98.7 2E-07 4.4E-12 88.9 11.8 144 432-591 5-151 (154)
50 PRK12652 putative monovalent c 98.6 1.6E-07 3.4E-12 101.8 11.8 123 610-760 4-144 (357)
51 PF06965 Na_H_antiport_1: Na+/ 98.6 6.4E-08 1.4E-12 103.5 8.1 254 88-385 54-333 (378)
52 COG3004 NhaA Na+/H+ antiporter 98.5 1.3E-05 2.7E-10 82.6 18.7 245 98-391 71-341 (390)
53 PRK12652 putative monovalent c 98.0 4.9E-05 1.1E-09 82.6 13.2 130 433-587 6-146 (357)
54 TIGR00698 conserved hypothetic 97.8 0.03 6.5E-07 60.4 29.5 145 48-213 26-174 (335)
55 PRK10490 sensor protein KdpD; 97.4 0.00082 1.8E-08 82.9 12.5 126 610-771 249-374 (895)
56 PF03601 Cons_hypoth698: Conse 97.4 0.058 1.3E-06 57.7 23.9 144 49-212 22-167 (305)
57 PF05684 DUF819: Protein of un 97.4 0.2 4.4E-06 55.3 28.7 82 52-143 24-105 (378)
58 COG0786 GltS Na+/glutamate sym 97.4 0.044 9.6E-07 59.0 22.4 102 279-382 232-341 (404)
59 PRK12460 2-keto-3-deoxyglucona 97.3 0.014 2.9E-07 61.5 18.1 242 98-423 51-301 (312)
60 PF03616 Glt_symporter: Sodium 97.3 0.18 4E-06 55.5 27.6 95 289-389 246-346 (368)
61 TIGR00210 gltS sodium--glutama 97.0 0.23 5E-06 55.1 24.8 94 289-385 244-340 (398)
62 PF03390 2HCT: 2-hydroxycarbox 97.0 0.47 1E-05 52.2 25.9 249 107-393 109-378 (414)
63 PRK10490 sensor protein KdpD; 97.0 0.0054 1.2E-07 75.8 12.6 124 431-591 249-373 (895)
64 COG3493 CitS Na+/citrate sympo 96.6 0.14 3E-06 54.6 18.0 253 107-394 126-398 (438)
65 COG2205 KdpD Osmosensitive K+ 96.6 0.011 2.3E-07 69.0 10.4 128 610-771 247-374 (890)
66 COG2855 Predicted membrane pro 96.4 1.8 3.9E-05 46.2 24.8 147 47-213 31-177 (334)
67 PF03812 KdgT: 2-keto-3-deoxyg 96.1 0.24 5.3E-06 52.1 16.2 91 97-189 50-140 (314)
68 PF03956 DUF340: Membrane prot 96.0 0.066 1.4E-06 53.1 11.2 130 57-212 2-136 (191)
69 PRK03562 glutathione-regulated 96.0 0.19 4.2E-06 59.5 17.0 134 40-193 227-362 (621)
70 PRK03659 glutathione-regulated 95.9 0.23 4.9E-06 58.7 17.0 130 41-190 225-356 (601)
71 TIGR00832 acr3 arsenical-resis 95.8 3.7 8.1E-05 44.6 27.0 102 96-211 47-153 (328)
72 COG0385 Predicted Na+-dependen 95.5 2.6 5.7E-05 44.9 21.0 151 88-259 34-191 (319)
73 COG2205 KdpD Osmosensitive K+ 95.3 0.078 1.7E-06 62.1 9.7 126 432-593 248-374 (890)
74 PRK03818 putative transporter; 95.2 0.55 1.2E-05 54.7 16.6 133 29-181 6-143 (552)
75 PF06826 Asp-Al_Ex: Predicted 95.2 0.46 1E-05 46.2 13.4 126 36-180 4-136 (169)
76 cd01984 AANH_like Adenine nucl 95.0 0.065 1.4E-06 45.7 6.2 34 614-648 1-34 (86)
77 TIGR00783 ccs citrate carrier 95.0 2.3 5E-05 46.0 19.1 246 107-393 40-311 (347)
78 cd01984 AANH_like Adenine nucl 94.9 0.088 1.9E-06 44.9 6.7 49 532-588 35-84 (86)
79 PRK10669 putative cation:proto 94.8 0.79 1.7E-05 53.8 16.6 123 48-190 243-367 (558)
80 PF01758 SBF: Sodium Bile acid 94.5 1.6 3.5E-05 43.3 15.9 106 96-215 2-112 (187)
81 TIGR00932 2a37 transporter, mo 94.4 0.31 6.6E-06 51.6 11.1 109 278-390 4-114 (273)
82 PF05145 AmoA: Putative ammoni 94.3 9.5 0.00021 41.3 22.2 119 272-397 158-279 (318)
83 PF13593 DUF4137: SBF-like CPA 94.1 5.3 0.00012 43.1 19.7 154 91-259 30-188 (313)
84 PLN03159 cation/H(+) antiporte 93.9 1.3 2.8E-05 54.3 16.3 42 430-473 628-669 (832)
85 TIGR03802 Asp_Ala_antiprt aspa 93.4 0.68 1.5E-05 54.2 12.1 96 33-144 14-113 (562)
86 TIGR00793 kdgT 2-keto-3-deoxyg 93.3 2 4.2E-05 45.2 13.9 248 98-423 51-307 (314)
87 COG0475 KefB Kef-type K+ trans 93.2 3.2 6.8E-05 46.5 16.7 102 33-144 223-325 (397)
88 TIGR00844 c_cpa1 na(+)/h(+) an 93.1 0.71 1.5E-05 55.1 11.7 68 322-391 75-144 (810)
89 PRK05326 potassium/proton anti 93.0 0.79 1.7E-05 53.8 12.1 116 273-391 13-131 (562)
90 PRK04972 putative transporter; 92.9 0.73 1.6E-05 53.8 11.5 121 32-179 15-140 (558)
91 PF03601 Cons_hypoth698: Conse 92.9 1.2 2.6E-05 47.8 12.1 121 273-395 5-130 (305)
92 TIGR01625 YidE_YbjL_dupl AspT/ 92.7 0.69 1.5E-05 44.2 9.0 113 52-181 20-138 (154)
93 TIGR00698 conserved hypothetic 92.7 0.83 1.8E-05 49.5 10.6 105 29-143 216-331 (335)
94 TIGR00841 bass bile acid trans 92.6 16 0.00035 38.8 20.6 151 93-259 9-164 (286)
95 TIGR03082 Gneg_AbrB_dup membra 92.0 2.3 5E-05 40.8 11.8 97 36-146 2-100 (156)
96 COG2855 Predicted membrane pro 92.0 0.86 1.9E-05 48.6 9.4 106 285-393 32-137 (334)
97 COG0798 ACR3 Arsenite efflux p 91.9 20 0.00044 38.4 22.0 186 49-259 13-202 (342)
98 TIGR03802 Asp_Ala_antiprt aspa 90.8 2.3 4.9E-05 49.8 12.3 115 50-181 412-531 (562)
99 TIGR00831 a_cpa1 Na+/H+ antipo 90.6 1.1 2.4E-05 52.1 9.6 114 276-394 8-123 (525)
100 COG3180 AbrB Putative ammonia 90.5 29 0.00064 37.6 25.8 99 31-144 8-109 (352)
101 TIGR02432 lysidine_TilS_N tRNA 88.9 2.7 5.9E-05 41.6 9.7 37 613-649 1-37 (189)
102 PRK05274 2-keto-3-deoxyglucona 88.5 8.2 0.00018 41.7 13.5 47 99-145 54-100 (326)
103 TIGR03082 Gneg_AbrB_dup membra 88.0 6.6 0.00014 37.7 11.3 116 275-397 4-122 (156)
104 PRK12460 2-keto-3-deoxyglucona 87.8 4 8.6E-05 43.4 10.3 76 56-144 169-244 (312)
105 TIGR00946 2a69 he Auxin Efflux 86.9 13 0.00029 40.1 14.4 134 51-208 180-314 (321)
106 COG1346 LrgB Putative effector 86.8 23 0.00049 35.9 14.4 142 42-204 19-165 (230)
107 TIGR00210 gltS sodium--glutama 86.7 17 0.00037 40.6 15.0 167 32-210 222-393 (398)
108 PRK04972 putative transporter; 86.4 6.5 0.00014 46.0 12.2 131 33-180 385-525 (558)
109 COG2985 Predicted permease [Ge 85.1 6.5 0.00014 43.9 10.4 142 42-208 17-173 (544)
110 PRK03818 putative transporter; 84.2 23 0.0005 41.4 15.3 105 56-177 403-513 (552)
111 COG1646 Predicted phosphate-bi 83.9 53 0.0012 33.4 15.4 60 521-590 16-76 (240)
112 PF01171 ATP_bind_3: PP-loop f 83.3 9.8 0.00021 37.4 10.2 38 613-650 1-38 (182)
113 cd01992 PP-ATPase N-terminal d 82.7 8.1 0.00018 37.9 9.5 37 613-649 1-37 (185)
114 PRK04288 antiholin-like protei 82.3 43 0.00093 34.3 14.3 103 87-206 64-166 (232)
115 TIGR00808 malonate_madM malona 81.5 20 0.00043 35.4 10.9 107 33-146 17-133 (254)
116 PF05145 AmoA: Putative ammoni 80.9 18 0.00038 39.2 11.9 99 32-144 155-255 (318)
117 COG2431 Predicted membrane pro 78.8 40 0.00088 35.1 12.7 129 55-209 108-240 (297)
118 PRK03359 putative electron tra 78.7 7.7 0.00017 40.5 7.9 109 616-754 30-149 (256)
119 PRK09903 putative transporter 76.9 45 0.00098 35.9 13.7 109 51-181 171-280 (314)
120 PF00999 Na_H_Exchanger: Sodiu 76.9 0.58 1.3E-05 51.9 -1.0 110 276-389 6-121 (380)
121 COG0025 NhaP NhaP-type Na+/H+ 76.2 15 0.00033 41.5 10.0 71 323-395 64-136 (429)
122 PF03956 DUF340: Membrane prot 76.0 4.2 9.1E-05 40.4 4.9 39 351-389 58-96 (191)
123 COG2985 Predicted permease [Ge 74.6 13 0.00029 41.5 8.6 112 53-181 395-510 (544)
124 PF03977 OAD_beta: Na+-transpo 74.5 7.3 0.00016 41.5 6.3 98 322-423 68-172 (360)
125 COG3263 NhaP-type Na+/H+ and K 73.6 29 0.00062 38.6 10.6 71 318-389 60-130 (574)
126 PF03616 Glt_symporter: Sodium 73.6 34 0.00074 37.8 11.7 97 33-136 225-323 (368)
127 PF04172 LrgB: LrgB-like famil 73.4 53 0.0011 33.3 12.0 103 87-206 48-150 (215)
128 cd01993 Alpha_ANH_like_II This 71.3 34 0.00075 33.2 10.3 38 613-650 1-40 (185)
129 PF05982 DUF897: Domain of unk 70.2 20 0.00044 38.3 8.4 79 55-146 182-263 (327)
130 COG2086 FixA Electron transfer 69.7 16 0.00035 38.1 7.5 110 616-756 31-150 (260)
131 TIGR00659 conserved hypothetic 69.6 95 0.0021 31.7 12.8 103 87-206 58-160 (226)
132 COG0037 MesJ tRNA(Ile)-lysidin 66.4 36 0.00078 36.2 9.9 37 612-650 22-58 (298)
133 COG1883 OadB Na+-transporting 66.1 5.6 0.00012 41.2 3.2 97 322-423 83-187 (375)
134 PRK06801 hypothetical protein; 65.7 24 0.00052 37.5 8.1 112 517-642 16-131 (286)
135 PRK12342 hypothetical protein; 65.4 25 0.00054 36.6 8.0 34 616-650 29-62 (254)
136 COG3180 AbrB Putative ammonia 64.2 1.3E+02 0.0028 32.9 13.1 88 26-126 181-271 (352)
137 COG4651 RosB Kef-type K+ trans 62.9 2.1E+02 0.0046 30.4 14.4 61 48-119 243-303 (408)
138 TIGR03136 malonate_biotin Na+- 61.7 18 0.00039 39.1 6.1 102 319-423 101-209 (399)
139 PF01012 ETF: Electron transfe 60.8 31 0.00066 33.2 7.3 27 622-648 15-41 (164)
140 PRK15475 oxaloacetate decarbox 60.2 5.6 0.00012 42.7 2.1 116 320-439 131-270 (433)
141 TIGR01625 YidE_YbjL_dupl AspT/ 59.8 30 0.00065 33.1 6.8 87 292-378 23-115 (154)
142 PRK10711 hypothetical protein; 59.7 2E+02 0.0044 29.5 13.0 104 87-207 59-162 (231)
143 TIGR00783 ccs citrate carrier 59.2 85 0.0018 34.2 10.8 99 42-146 192-293 (347)
144 KOG1650 Predicted K+/H+-antipo 59.0 91 0.002 38.1 12.3 93 94-196 312-406 (769)
145 PRK15476 oxaloacetate decarbox 58.9 6.1 0.00013 42.5 2.1 116 320-439 131-270 (433)
146 PRK15477 oxaloacetate decarbox 58.9 6.1 0.00013 42.5 2.1 116 320-439 131-270 (433)
147 PF03977 OAD_beta: Na+-transpo 58.8 2.7E+02 0.0058 30.2 24.8 253 33-348 4-269 (360)
148 PRK09196 fructose-1,6-bisphosp 57.4 76 0.0016 34.6 10.1 113 517-643 16-140 (347)
149 KOG2310 DNA repair exonuclease 56.9 18 0.00039 41.0 5.3 81 534-619 41-124 (646)
150 PRK09197 fructose-bisphosphate 55.0 1.2E+02 0.0026 33.1 11.1 91 503-596 6-104 (350)
151 TIGR03136 malonate_biotin Na+- 54.8 3.2E+02 0.007 29.9 22.1 258 32-349 23-307 (399)
152 TIGR01109 Na_pump_decarbB sodi 54.7 3E+02 0.0066 29.6 18.8 85 37-128 6-96 (354)
153 PF03547 Mem_trans: Membrane t 53.8 30 0.00065 38.3 6.8 84 294-380 10-94 (385)
154 COG0786 GltS Na+/glutamate sym 51.8 1.9E+02 0.0041 32.0 11.9 109 31-146 224-335 (404)
155 PRK04125 murein hydrolase regu 51.7 1.7E+02 0.0036 27.6 10.1 104 28-140 7-113 (141)
156 TIGR01521 FruBisAldo_II_B fruc 50.6 1.1E+02 0.0024 33.4 10.0 112 517-642 14-137 (347)
157 PRK05835 fructose-bisphosphate 48.9 1.2E+02 0.0026 32.5 9.9 113 517-643 15-132 (307)
158 PF01884 PcrB: PcrB family; I 48.8 3.2E+02 0.0069 28.1 16.0 91 523-635 10-108 (230)
159 PRK13399 fructose-1,6-bisphosp 48.6 1.2E+02 0.0027 33.0 10.1 113 517-643 16-140 (347)
160 PRK10660 tilS tRNA(Ile)-lysidi 48.5 72 0.0016 36.2 8.7 40 611-650 15-55 (436)
161 PRK08185 hypothetical protein; 45.6 61 0.0013 34.4 7.0 111 517-642 11-125 (283)
162 COG0679 Predicted permeases [G 45.2 4.2E+02 0.0091 28.4 16.0 173 29-211 128-307 (311)
163 TIGR01109 Na_pump_decarbB sodi 44.2 1E+02 0.0022 33.1 8.1 101 319-423 59-172 (354)
164 TIGR02113 coaC_strep phosphopa 44.0 39 0.00084 33.2 5.0 117 612-770 1-119 (177)
165 COG2035 Predicted membrane pro 42.6 4.3E+02 0.0093 27.8 15.1 40 26-67 58-97 (276)
166 PRK12737 gatY tagatose-bisphos 42.6 94 0.002 33.0 7.9 113 517-643 16-132 (284)
167 TIGR01520 FruBisAldo_II_A fruc 41.2 1.3E+02 0.0028 32.9 8.8 91 503-596 12-111 (357)
168 PRK01821 hypothetical protein; 40.8 3.1E+02 0.0066 25.6 10.1 101 28-137 9-112 (133)
169 PRK01658 holin-like protein; V 39.6 3E+02 0.0065 25.2 10.2 104 28-140 4-110 (122)
170 PF03812 KdgT: 2-keto-3-deoxyg 39.4 1.1E+02 0.0024 32.6 7.7 73 57-142 175-247 (314)
171 COG1346 LrgB Putative effector 39.3 4.4E+02 0.0095 26.9 13.8 71 310-393 61-131 (230)
172 PRK12857 fructose-1,6-bisphosp 39.1 1.1E+02 0.0024 32.5 7.8 113 517-643 16-132 (284)
173 TIGR02039 CysD sulfate adenyly 37.0 80 0.0017 33.7 6.3 40 611-650 19-58 (294)
174 PRK05253 sulfate adenylyltrans 36.5 61 0.0013 34.8 5.4 40 611-650 27-66 (301)
175 PRK07998 gatY putative fructos 36.0 1.1E+02 0.0025 32.3 7.3 112 517-642 16-131 (283)
176 cd01986 Alpha_ANH_like Adenine 35.5 1.4E+02 0.0029 26.0 6.7 33 614-650 1-33 (103)
177 PRK06806 fructose-bisphosphate 35.5 1.5E+02 0.0033 31.4 8.2 112 517-642 16-131 (281)
178 TIGR00793 kdgT 2-keto-3-deoxyg 34.0 2.3E+02 0.0049 30.3 8.9 74 57-143 175-248 (314)
179 TIGR01858 tag_bisphos_ald clas 33.7 1.5E+02 0.0032 31.5 7.6 113 517-643 14-130 (282)
180 PRK12738 kbaY tagatose-bisphos 33.6 1.5E+02 0.0033 31.5 7.7 113 517-643 16-132 (286)
181 COG3969 Predicted phosphoadeno 33.3 50 0.0011 35.5 3.9 39 610-648 26-65 (407)
182 PRK12933 secD preprotein trans 33.0 8.9E+02 0.019 28.7 15.4 12 324-335 552-563 (604)
183 PF03547 Mem_trans: Membrane t 32.5 2.4E+02 0.0052 31.1 9.7 129 291-420 244-383 (385)
184 cd00946 FBP_aldolase_IIA Class 32.4 1.9E+02 0.0041 31.6 8.3 89 505-596 3-99 (345)
185 TIGR00930 2a30 K-Cl cotranspor 32.4 1.1E+03 0.024 29.7 47.4 128 433-591 576-708 (953)
186 PRK09903 putative transporter 32.2 2.2E+02 0.0048 30.5 9.1 91 292-385 11-102 (314)
187 COG3748 Predicted membrane pro 32.2 4.1E+02 0.0089 28.5 10.2 40 322-362 226-265 (407)
188 TIGR00840 b_cpa1 sodium/hydrog 31.6 2.8E+02 0.0061 32.6 10.3 73 33-109 239-311 (559)
189 PRK09796 PTS system cellobiose 31.5 8.5E+02 0.018 28.0 14.4 32 130-170 160-191 (472)
190 PRK05274 2-keto-3-deoxyglucona 31.0 4.7E+02 0.01 28.4 11.1 46 98-143 205-250 (326)
191 PRK09824 PTS system beta-gluco 30.7 6.9E+02 0.015 29.8 13.3 15 53-67 111-125 (627)
192 TIGR02185 Trep_Strep conserved 30.7 5.4E+02 0.012 25.4 15.2 25 351-375 161-185 (189)
193 PF03390 2HCT: 2-hydroxycarbox 29.9 8.4E+02 0.018 27.4 13.0 99 42-146 259-360 (414)
194 cd00947 TBP_aldolase_IIB Tagat 29.4 2E+02 0.0043 30.4 7.7 113 517-643 11-127 (276)
195 PRK10696 tRNA 2-thiocytidine b 29.3 3.3E+02 0.0071 28.3 9.5 39 611-649 29-69 (258)
196 PRK09195 gatY tagatose-bisphos 29.3 1.9E+02 0.0042 30.7 7.7 113 517-643 16-132 (284)
197 cd01995 ExsB ExsB is a transcr 28.1 2.5E+02 0.0054 26.9 7.8 33 613-649 1-33 (169)
198 PF09605 Trep_Strep: Hypotheti 27.8 6E+02 0.013 25.0 15.9 126 243-374 39-181 (186)
199 PF02601 Exonuc_VII_L: Exonucl 27.5 93 0.002 33.6 5.1 48 682-729 28-85 (319)
200 PRK07313 phosphopantothenoylcy 27.0 1E+02 0.0022 30.3 4.9 32 612-644 2-33 (182)
201 PRK04288 antiholin-like protei 26.9 7.1E+02 0.015 25.6 13.3 42 347-392 92-133 (232)
202 TIGR02069 cyanophycinase cyano 26.7 1.5E+02 0.0033 30.8 6.3 18 626-643 15-32 (250)
203 cd01985 ETF The electron trans 26.2 3.5E+02 0.0076 26.2 8.6 28 620-648 17-44 (181)
204 COG1570 XseA Exonuclease VII, 25.8 1.1E+02 0.0023 34.4 5.2 50 680-729 147-203 (440)
205 TIGR00167 cbbA ketose-bisphosp 25.5 2.9E+02 0.0062 29.4 8.2 113 517-643 16-135 (288)
206 PF03652 UPF0081: Uncharacteri 25.4 2E+02 0.0043 26.8 6.2 61 531-596 37-98 (135)
207 KOG2722 Predicted membrane pro 25.3 1.1E+02 0.0024 33.3 4.9 69 309-380 38-107 (408)
208 COG3371 Predicted membrane pro 25.3 4.6E+02 0.0099 25.7 8.6 61 50-122 73-133 (181)
209 PRK13523 NADPH dehydrogenase N 25.0 6E+02 0.013 27.7 10.8 128 561-734 186-314 (337)
210 KOG4050 Glutamate transporter 25.0 4.9E+02 0.011 24.9 8.4 12 309-320 155-166 (188)
211 PRK14853 nhaA pH-dependent sod 24.6 3.7E+02 0.008 30.3 9.1 25 315-339 60-84 (423)
212 TIGR00841 bass bile acid trans 24.0 1.1E+02 0.0023 32.6 4.7 92 292-387 142-233 (286)
213 PF02844 GARS_N: Phosphoribosy 23.9 70 0.0015 28.2 2.7 24 532-555 49-72 (100)
214 TIGR00342 thiazole biosynthesi 22.8 5.6E+02 0.012 28.3 10.2 37 610-650 171-207 (371)
215 COG3763 Uncharacterized protei 22.5 4.3E+02 0.0094 21.6 6.7 29 231-259 8-36 (71)
216 COG0385 Predicted Na+-dependen 22.4 1.7E+02 0.0037 31.5 5.7 84 293-384 170-258 (319)
217 TIGR00946 2a69 he Auxin Efflux 22.1 9.8E+02 0.021 25.5 23.9 128 290-421 181-316 (321)
218 TIGR01859 fruc_bis_ald_ fructo 22.1 3.2E+02 0.007 28.9 7.8 112 517-641 14-130 (282)
219 PF13593 DUF4137: SBF-like CPA 21.8 3.4E+02 0.0074 29.2 8.1 91 293-386 7-98 (313)
220 COG1380 Putative effector of m 21.5 6.5E+02 0.014 23.3 10.0 106 28-142 5-113 (128)
221 PRK13982 bifunctional SbtC-lik 21.5 1.2E+02 0.0025 34.8 4.6 123 610-777 69-194 (475)
222 PRK10481 hypothetical protein; 21.2 3.9E+02 0.0084 27.3 7.8 69 503-588 139-210 (224)
223 PF06826 Asp-Al_Ex: Predicted 21.1 5.4E+02 0.012 25.0 8.5 89 288-379 21-115 (169)
224 cd01713 PAPS_reductase This do 20.9 1.6E+02 0.0036 27.6 5.0 36 613-649 1-36 (173)
225 TIGR02057 PAPS_reductase phosp 20.8 5.5E+02 0.012 26.2 9.0 37 612-651 26-62 (226)
226 TIGR02359 thiW thiW protein. L 20.7 7.6E+02 0.017 23.8 12.6 16 55-70 34-49 (160)
227 PRK00286 xseA exodeoxyribonucl 20.4 1.4E+02 0.0031 33.8 5.0 49 681-729 148-202 (438)
228 PF11299 DUF3100: Protein of u 20.3 3.9E+02 0.0085 27.4 7.4 138 58-213 26-165 (241)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=2.8e-128 Score=1145.96 Aligned_cols=743 Identities=49% Similarity=0.841 Sum_probs=651.2
Q ss_pred ccCCCCcccCCCCCcccHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHH
Q 003979 10 KTSSDGVWQGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPI 89 (782)
Q Consensus 10 ~~~s~~~~~~~~~~~~~~~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~ 89 (782)
+.+|+|+|+|+||++|++|.+++|+++++++++++++++||+|||.++|||++|+++||+++|.++.+.+.+||.++.+.
T Consensus 24 ~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~ 103 (832)
T PLN03159 24 MITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMV 103 (832)
T ss_pred CccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999888889999888889
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhc
Q 003979 90 LESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSIT 169 (782)
Q Consensus 90 l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~T 169 (782)
+++++++|++++||++|+|+|++.+|+++|+++.+++.++++||++|+.++++++... ........++++|+++|.|
T Consensus 104 l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~---~~~~~~~~~l~~g~alS~T 180 (832)
T PLN03159 104 LETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVS---RNVHQGTFILFLGVALSVT 180 (832)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cccchhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998887764321 1122234578999999999
Q ss_pred cHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 003979 170 AFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVR 249 (782)
Q Consensus 170 s~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 249 (782)
|+||++++|+|+|+++++.||+++++++++|+++|++++++..+...+ ......+|.++..++|++++.+++|
T Consensus 181 s~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~-------~~~~~~l~~~l~~~~f~~~~~~v~r 253 (832)
T PLN03159 181 AFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAEND-------STSLASLWVLLSSVAFVLFCFYVVR 253 (832)
T ss_pred hHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887665431 1223355666777788888889999
Q ss_pred HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHH
Q 003979 250 PIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLY 329 (782)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plf 329 (782)
|++.|+.||+ +++++.++.++.++++++++++++++.+|+|+++|||++|+++|+ +++++++.+|++++++++|+|+|
T Consensus 254 ~~~~~~~r~~-~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlF 331 (832)
T PLN03159 254 PGIWWIIRRT-PEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLF 331 (832)
T ss_pred HHHHHHHHhC-cCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 888888899999999999999999999999999999999999997 78899999999999999999999
Q ss_pred HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec---------cCh
Q 003979 330 FASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV---------LND 400 (782)
Q Consensus 330 F~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl---------i~~ 400 (782)
|+++|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++|++||++++++ +++
T Consensus 332 Fv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~ 411 (832)
T PLN03159 332 FAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDD 411 (832)
T ss_pred HHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCc
Confidence 99999999998886544566666777888999999999999999999999999999999999999987 899
Q ss_pred hhHHHHHHHHHHHHHhhhhhhcc---cccc------------CCcccceEEEEecCCCChhHHHHHHHHhccCCCCCceE
Q 003979 401 EMFAILVLMALFTTFMTTPMRQL---PAAK------------DSKDEFRIQACVHGPENVPSLIKLTELIRTTEKSTLKL 465 (782)
Q Consensus 401 ~~~~~lv~~~~v~t~i~~pl~~~---~~~~------------~~~~e~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v 465 (782)
+.|++++++++++|.+++|++.+ |+|| ++++|+|||+|+|++++++.+++|++++++++++|.++
T Consensus 412 ~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~v 491 (832)
T PLN03159 412 ESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICI 491 (832)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceE
Confidence 99999999998899999999988 5444 57889999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHHHhhc-cceEEEEeEEecCCCchHHHHHHHHHhc
Q 003979 466 YVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAYKQL-RRVTIRHSTAISALSTMHEDIFHVAEAK 544 (782)
Q Consensus 466 ~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~v~v~~~~~v~~~~~~~~~I~~~a~~~ 544 (782)
|+|||+|+++|+++.++.|+.+++..+..++. ..++|++.++|+.|++. ++++++++++++|+++||+|||+.|+|+
T Consensus 492 y~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~--~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~ 569 (832)
T PLN03159 492 YVLHLVELTGRASAMLIVHNTRKSGRPALNRT--QAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDK 569 (832)
T ss_pred EEEEEEeecCCCccceeeeecccccccccccc--cccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhc
Confidence 99999999999999998887654433222211 24579999999999976 5899999999999999999999999999
Q ss_pred CccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCCCCCCCcccCccccccceEEEeccCCcch
Q 003979 545 RVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDD 624 (782)
Q Consensus 545 ~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~~~~~~~~~~~~~~~~~~Ilv~~~g~~~~ 624 (782)
++++||+|||++|+.||.+++. +..+|.+|++|+++|||+|+|+||||.. +..+....+ ..+||+++|.||+||
T Consensus 570 ~~slIilpfhk~~~~dg~~~~~--~~~~r~~n~~VL~~ApCsVgIlVDRg~~-~~~~~~~~~---~~~~v~~~F~GG~DD 643 (832)
T PLN03159 570 RVSLIIIPFHKQQTVDGGMEAT--NPAFRGVNQNVLANAPCSVGILVDRGLS-GATRLASNQ---VSHHVAVLFFGGPDD 643 (832)
T ss_pred CCCEEEECCCCccCCCCCcccc--CchHHHHHHHHHccCCCCEEEEEeCCCC-ccccccccc---cceeEEEEecCCcch
Confidence 9999999999999999999888 8899999999999999999999999865 332322233 467999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEEEeeecCccccccc-ccCCCCCCCcccCCCCcchhhhhHHHHHHHHHHh--cCCcEEEEE
Q 003979 625 RRALDLGGRMAENPGGNVTLVRFIGQASRAATSS-IAERPTSDISTENGNSFSRERELDEAAVDDFMRK--WGGSVEYEE 701 (782)
Q Consensus 625 ~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~~~e 701 (782)
||||+||+|||+|+++++|++|+++.+....... ...++............++|++.||++++||+.+ .++++.|.|
T Consensus 644 REALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E 723 (832)
T PLN03159 644 REALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTE 723 (832)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 9999999999999999999999997543221000 0000000000000001134788999999999998 467899999
Q ss_pred EEecChHHHHHHhhcccC-CcEEEEccCCC-CccccccccccCCCCcccccchhhhhcCCCCCcccEEEEeecc
Q 003979 702 KVMANVKDEVLKIGQIRD-YELVVVGKGRF-PSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVIQQHN 773 (782)
Q Consensus 702 ~~v~~g~~~~~~~~~~~~-~DLivvG~~g~-~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLvvqq~~ 773 (782)
+.|+|++|++..++++++ |||++|||+++ +|++++||++ |+||||||+|||+|||+||.+++||||||||.
T Consensus 724 ~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~-w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~ 796 (832)
T PLN03159 724 KVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTD-WSECPELGAIGDLLASSDFAATVSVLVVQQYV 796 (832)
T ss_pred EecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccc-cccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence 999999999999999997 99999999884 6999999999 99999999999999999999999999999997
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-102 Score=906.67 Aligned_cols=728 Identities=46% Similarity=0.772 Sum_probs=641.3
Q ss_pred cccCCCCcccCCCCCcccHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchH
Q 003979 9 IKTSSDGVWQGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTP 88 (782)
Q Consensus 9 ~~~~s~~~~~~~~~~~~~~~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~ 88 (782)
.+.++.|.|+|+||++|++|++++|+.+++++++++++++||+|||++++++++||++||+.+|.+..+.+.+||.++..
T Consensus 3 ~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~ 82 (769)
T KOG1650|consen 3 VKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMI 82 (769)
T ss_pred CccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc---hhHHHHHHHHH
Q 003979 89 ILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVG---YGQFIIFMGVS 165 (782)
Q Consensus 89 ~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~l~l~~~ 165 (782)
.+++++.+|+.+++|+.|+|+|.+.+|+++|++..+++.++++|+..|.++...+..... ...+. ...+-.++..+
T Consensus 83 ~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 161 (769)
T KOG1650|consen 83 VLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKA-DKEDGALFLPFEILFILSA 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhcccccc-ccccccccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887777642220 11111 00145778889
Q ss_pred HhhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 003979 166 LSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFML 245 (782)
Q Consensus 166 ~s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (782)
.|.||+|+++++|.|+|++++++||+++++++++|+++|.++.+...+.... ..++....|.+...+++.+++.
T Consensus 162 ~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~ 235 (769)
T KOG1650|consen 162 QSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSEL------KLSPLRSVWDLVLVIGFVLFLF 235 (769)
T ss_pred hhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccC------CCcchHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999999999999999999888888776642 2235556788888889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhh
Q 003979 246 IVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIG-IHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGL 324 (782)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g-~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~ 324 (782)
++++|.+.|+.||+ |++++.++.++..++..++.++.+++.++ +|+++|||+.|+++|+++|+++.+.+|++++..++
T Consensus 236 ~v~~p~~~wi~kr~-pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~ 314 (769)
T KOG1650|consen 236 FVVRPLMKWIIKRT-PEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGL 314 (769)
T ss_pred eehhhhHHHHhhcC-CCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHH
Confidence 99999999999998 99999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec-------
Q 003979 325 LLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV------- 397 (782)
Q Consensus 325 f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl------- 397 (782)
|+|+||+.+|+++|+..+.. |......+...+++|++++..+++++|+|+||++.+|.+|++||.++++.
T Consensus 315 llPl~~~~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~ 391 (769)
T KOG1650|consen 315 LLPLYFAISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDR 391 (769)
T ss_pred HHHHHHHhhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 99999999999999998875 77777788888999999999999999999999999999999999999987
Q ss_pred --cChhhHHHHHHHHHHHHHhhhhhhcc---cccc------------CCcccceEEEEecCCCChhHHHHHHHHhccCCC
Q 003979 398 --LNDEMFAILVLMALFTTFMTTPMRQL---PAAK------------DSKDEFRIQACVHGPENVPSLIKLTELIRTTEK 460 (782)
Q Consensus 398 --i~~~~~~~lv~~~~v~t~i~~pl~~~---~~~~------------~~~~e~rILvpv~~~~~~~~~i~l~~~~~~~~~ 460 (782)
++++.|++++++++++|.+++|++.. |+|+ ++++++|||.|+|++++++.++++++++.++++
T Consensus 392 ~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~ 471 (769)
T KOG1650|consen 392 KILSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLE 471 (769)
T ss_pred CCcccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCC
Confidence 89999999999999999999999998 5544 578999999999999999999999999998877
Q ss_pred CCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHHHhhc--cceEEEEeEEecCCCchHHHHH
Q 003979 461 STLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAYKQL--RRVTIRHSTAISALSTMHEDIF 538 (782)
Q Consensus 461 ~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~v~v~~~~~v~~~~~~~~~I~ 538 (782)
+|..++++|++|+.+|+.++++.|+.++++..... ...++++..+|+.|++. .++.++++++++|+.+||+|||
T Consensus 472 ~p~~v~~lhlveL~~~~~~~li~h~~~~~~~~~~~----s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic 547 (769)
T KOG1650|consen 472 SPLSVYALHLVELVGRATPLLISHKLRKNGRVESR----SSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDIC 547 (769)
T ss_pred CCcceeeeeeeecccccchhhhhhhhccccccccc----cccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhh
Confidence 79999999999999999999888887655322111 24567999999999984 6799999999999999999999
Q ss_pred HHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCCCCCCCc-ccCccccccceEEEe
Q 003979 539 HVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQT-VAEPAATVLKRVCII 617 (782)
Q Consensus 539 ~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~~~~~~~-~~~~~~~~~~~Ilv~ 617 (782)
..|.+++.++|++|+|++|+.++.+++. +..+|++|++|+++|||+|++++|||.. .... +... ...+|++.
T Consensus 548 ~la~~~~~~liilpfhk~~~~~~~~e~~--~~~~r~in~~vl~~aPCSVgIlvdRg~~--~~~~~~~~~---~~~~v~~l 620 (769)
T KOG1650|consen 548 TLALDKGVSLIILPFHKHWSDGGTLESD--DPAIRELNRNVLKNAPCSVGILVDRGLR--RSGVTQKRG---SSYKVVVL 620 (769)
T ss_pred HHHHhhCCcEEEeehhhhccCCCceecC--cHHHHHHHHHHHhcCCCeEEEEEecCcc--cccceeccc---ceeEEEEE
Confidence 9999999999999999999966688888 8899999999999999999999999721 1111 1122 46799999
Q ss_pred ccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH-HHh--cC
Q 003979 618 FFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF-MRK--WG 694 (782)
Q Consensus 618 ~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~~ 694 (782)
|.||+|||||+.++.||++++++++|++|+++.+...+.. ..+++ .+..+++-.+++ +.. .+
T Consensus 621 F~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~-----------~~~~~----~~~l~~~~~~~~~~~~~~~~ 685 (769)
T KOG1650|consen 621 FLGGKDDREALALAKRMAENPRVTLTVIRFFPDESKYNRK-----------VLVEV----GKMLDQEGLEDFVKSTRESN 685 (769)
T ss_pred ecCChhhHHHHHHHHHHhhCCceEEEEEEeeccchhhccc-----------ccchh----hhhhhhhHHHHHHHHhhhch
Confidence 9999999999999999999999999999999865432110 00111 444455555555 322 34
Q ss_pred CcEEEE-EEEecChHHHHHHhhcccC-CcEEEEccCC-CCccccccccccCCCCcccccchhhhhcCCCCCcccEEEEee
Q 003979 695 GSVEYE-EKVMANVKDEVLKIGQIRD-YELVVVGKGR-FPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVIQQ 771 (782)
Q Consensus 695 ~~v~~~-e~~v~~g~~~~~~~~~~~~-~DLivvG~~g-~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLvvqq 771 (782)
.++.|. |+.++++.|+...++++.+ |||++|||++ .+++.++|+++ |+||||||.|||.++|+||..+.||||+||
T Consensus 686 ~~i~~~~ek~v~~~~et~~~~~~~~~~ydL~ivGr~~~~~~~~t~gl~~-W~e~pELg~IGd~las~~~~~~~svlvvqq 764 (769)
T KOG1650|consen 686 LDIIYAEEKIVLNGAETTALLRSITEDYDLFIVGRSHGMLSEATGGLSE-WSECPELGVIGDLLASSDFSSKVSVLVVQQ 764 (769)
T ss_pred hhhhhhhHHHHhcchhHHHHHHHhccccceEEEecccccccchhcCchh-cccCccccccCccccccccCccceEEEEEe
Confidence 456677 6999999999999999988 9999999999 59999999999 999999999999999999999999999999
Q ss_pred ccc
Q 003979 772 HNV 774 (782)
Q Consensus 772 ~~~ 774 (782)
|+.
T Consensus 765 ~~~ 767 (769)
T KOG1650|consen 765 QLY 767 (769)
T ss_pred eec
Confidence 975
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=8.3e-45 Score=421.95 Aligned_cols=361 Identities=23% Similarity=0.327 Sum_probs=300.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 003979 28 PLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGL 107 (782)
Q Consensus 28 ~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gl 107 (782)
+.++.++.+++.++.++..++||+|+|+++|||++|+++||+++|.++ ..+.++.++++|++++||.+|+
T Consensus 4 ~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGL 73 (621)
T PRK03562 4 SHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGL 73 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999999999764 2356899999999999999999
Q ss_pred ccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCc
Q 003979 108 ELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQ 187 (782)
Q Consensus 108 e~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~ 187 (782)
|+|++.+|+.+|+++.++..++++++++++.++++++.++ ..++++|.+++.||++++.++|+|+|+++|+
T Consensus 74 El~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~---------~~al~ig~~la~SStaiv~~~L~e~~~l~t~ 144 (621)
T PRK03562 74 ELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLRW---------QVALLIGLGLALSSTAIAMQAMNERNLMVTQ 144 (621)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Confidence 9999999999999999999999999988887777765443 5678999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCC
Q 003979 188 VGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGV----AFVAFMLIVVRPIMDWVARQCSSDN 263 (782)
Q Consensus 188 ~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~ 263 (782)
.||.+++.++++|++++++++++..+.... ...+.....+..+..+ +++++..++.+|+++|+.|+.
T Consensus 145 ~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~---- 215 (621)
T PRK03562 145 MGRSAFAILLFQDIAAIPLVAMIPLLAASG-----ASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSG---- 215 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 999999999999999999998876654421 0101111111122222 222233445555665554433
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhccccccccc
Q 003979 264 VLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIR 343 (782)
Q Consensus 264 ~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~ 343 (782)
.+|.+...+++++++++++++.+|+|+++|||++|+++++ ++++++++++++++ .++|+|+||+++||++|+..+.
T Consensus 216 --~~e~~~~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~ 291 (621)
T PRK03562 216 --LREVFTAVALFLVFGFGLLMEEVGLSMALGAFLAGVLLAS-SEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLL 291 (621)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHH
Confidence 3777888888889999999999999999999999999997 78899999999999 7999999999999999998876
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec---------cChhhHHHHHHHHHHHH
Q 003979 344 GIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV---------LNDEMFAILVLMALFTT 414 (782)
Q Consensus 344 ~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl---------i~~~~~~~lv~~~~v~t 414 (782)
. .|+.++.++++.+++|++++++.++++|+++++++.+|++|+++|++++++ ++++.|+.+++++ +.|
T Consensus 292 ~--~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v-~lS 368 (621)
T PRK03562 292 E--NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAV-ALS 368 (621)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHH
Confidence 4 344455666678999999999999999999999999999999999999988 8999999997655 556
Q ss_pred Hhhhhhhcc
Q 003979 415 FMTTPMRQL 423 (782)
Q Consensus 415 ~i~~pl~~~ 423 (782)
++.+|++..
T Consensus 369 ~~~tP~l~~ 377 (621)
T PRK03562 369 MAATPLLLV 377 (621)
T ss_pred HHHHHHHHH
Confidence 677777654
No 4
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=3.8e-43 Score=407.64 Aligned_cols=360 Identities=23% Similarity=0.372 Sum_probs=295.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 003979 30 LIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLEL 109 (782)
Q Consensus 30 ~l~~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~ 109 (782)
++.++.+++.++.+...+++|+|+|+++|||++|+++||+++|.++ ..+.+..++++|++++||.+|+|+
T Consensus 6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLel 75 (601)
T PRK03659 6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLEL 75 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4668889999999999999999999999999999999999999764 235578999999999999999999
Q ss_pred CchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchH
Q 003979 110 DLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVG 189 (782)
Q Consensus 110 d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g 189 (782)
|++.+|+.+|+++.++..++++|+++++.+.++++.++ ..++++|++++.||++++.++|+|+|+++++.|
T Consensus 76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~~~---------~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G 146 (601)
T PRK03659 76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFSW---------QAAVVGGIGLAMSSTAMALQLMREKGMNRSESG 146 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH---------HHHHHHHHHHHHHHHHHHHHHHHHcccccCchH
Confidence 99999999999999999999999887776655554332 567889999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchH
Q 003979 190 QTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDV 269 (782)
Q Consensus 190 ~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~e~ 269 (782)
|++++..+++|+.++++++++..+..... .........+.++..++++++..++.+|+++|+.+. +.+|.
T Consensus 147 ~~~l~vll~~Di~~i~ll~l~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~e~ 216 (601)
T PRK03659 147 QLGFSVLLFQDLAVIPALALVPLLAGSAD----EHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS------GVREV 216 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCchH
Confidence 99999999999999999887766553210 000111111112222222223334455555554332 24788
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHH
Q 003979 270 YICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWG 349 (782)
Q Consensus 270 ~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~ 349 (782)
++..+++++++++++++.+|+|+++|||++|+++++ ++++++++++++++ .++|+|+||+++||++|+..+.+ .|.
T Consensus 217 ~~~~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~--~~~ 292 (601)
T PRK03659 217 FTAAALLLVLGSALFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYT--HLL 292 (601)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHH--hHH
Confidence 888888889999999999999999999999999998 78899999999999 79999999999999999988765 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec---------cChhhHHHHHHHHHHHHHhhhhh
Q 003979 350 LLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV---------LNDEMFAILVLMALFTTFMTTPM 420 (782)
Q Consensus 350 ~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl---------i~~~~~~~lv~~~~v~t~i~~pl 420 (782)
.++.++++.+++|++++++.++++|+++++++.+|++|+++|++++++ ++++.|+.++.+++ .|++.+|+
T Consensus 293 ~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~-ls~~~tP~ 371 (601)
T PRK03659 293 WVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVT-LSMMTTPL 371 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHH-HHHHHHHH
Confidence 566667778899999999999999999999999999999999999987 89999999965554 55677887
Q ss_pred hcc
Q 003979 421 RQL 423 (782)
Q Consensus 421 ~~~ 423 (782)
+.+
T Consensus 372 l~~ 374 (601)
T PRK03659 372 LMK 374 (601)
T ss_pred HHH
Confidence 776
No 5
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=391.01 Aligned_cols=367 Identities=32% Similarity=0.570 Sum_probs=305.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 003979 28 PLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGL 107 (782)
Q Consensus 28 ~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gl 107 (782)
...+.++.++++++.+.+.++||+|+|+++||+++|+++||.+++.. .+..+.++.++++|++++||.+|+
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~---------~~~~~~i~~laelGvi~LlF~~GL 75 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI---------IESSEIIELLAELGVVFLLFLIGL 75 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc---------CCchHHHHHHHHHhHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999544433 246788999999999999999999
Q ss_pred ccCchhHHhccch-hHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccC
Q 003979 108 ELDLSSIRQNGKS-AFKIALAGITLPFLFGAGVSLF-LQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLT 185 (782)
Q Consensus 108 e~d~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~ 185 (782)
|+|++++|+++|+ +...+..++..|+.++....+. ++.++ ..++++|.+++.||+++++++++|+|+++
T Consensus 76 E~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---------~~al~lg~~l~~sS~~i~~~iL~e~~~~~ 146 (397)
T COG0475 76 EFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSL---------IAALFLGAALALSSTAIVLKILMELGLLK 146 (397)
T ss_pred CcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccCh---------HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999 8888888888888888654443 44433 55899999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 003979 186 TQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVL 265 (782)
Q Consensus 186 s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (782)
++.|++++++++++|+.++++++++..+...+ ...............+|.++..+..+++.+++.|+. ++..
T Consensus 147 ~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g------~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~--~~~~ 218 (397)
T COG0475 147 TREGQLILGALVFDDIAAILLLAIVPALAGGG------SGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRV--AKTE 218 (397)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccCC------CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhcc
Confidence 99999999999999999999999998887642 122222344445555666666666677888888877 2334
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchH-HHHHHHHHHHHHhhhHHHHHHHhhcccccccccc
Q 003979 266 VDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFA-VRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRG 344 (782)
Q Consensus 266 ~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~-~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~ 344 (782)
.+|..+..++++++.+++++|.+|+|.++|||++|+++++ .+.+ ++++++++++.+++|+|+||+.+|+++|+..+..
T Consensus 219 ~~e~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~-~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~ 297 (397)
T COG0475 219 SSELFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSE-SEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE 297 (397)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcc-cccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc
Confidence 5888899999999999999999999999999999999998 5556 7999999999777999999999999999999886
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec--------cChhhHHHHHHHHHHHHHh
Q 003979 345 IEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV--------LNDEMFAILVLMALFTTFM 416 (782)
Q Consensus 345 ~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl--------i~~~~~~~lv~~~~v~t~i 416 (782)
.+..+..++.+..++|.+++++.++..|.++|+++..|+.+.++|++++++ ++++.+...+.+++++|.+
T Consensus 298 --~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~~~i~~~~~~~~v~~smi~t~i 375 (397)
T COG0475 298 --NLLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALGSAISEALLTAVVILSMITTPI 375 (397)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 455567788888999999999999999999999999999999999999987 4455666555555555544
Q ss_pred hhhhhcc
Q 003979 417 TTPMRQL 423 (782)
Q Consensus 417 ~~pl~~~ 423 (782)
.+++...
T Consensus 376 ~~~~~~~ 382 (397)
T COG0475 376 LPLLTPI 382 (397)
T ss_pred HHHHHHH
Confidence 4333333
No 6
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=9.9e-44 Score=411.99 Aligned_cols=369 Identities=22% Similarity=0.315 Sum_probs=302.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 003979 30 LIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLEL 109 (782)
Q Consensus 30 ~l~~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~ 109 (782)
++..+.++++++.+++.++||+|+|+++|||++|+++||+++|... ..+.++.++++|++++||.+|+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence 3457788899999999999999999999999999999999998753 236788999999999999999999
Q ss_pred CchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchH
Q 003979 110 DLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVG 189 (782)
Q Consensus 110 d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g 189 (782)
|++.+|+.++..+..++.++++|+++++.+++.++.++ ..++++|+++|.||++++.++++|+|+++++.|
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G 147 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGWSL---------MTGIVFGLCLSTASTVVLLRALEERQLIDSQRG 147 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHHHHHHHHHHHHhcCcccCcch
Confidence 99999999888887788888889888887776665433 567889999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccch
Q 003979 190 QTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSS-LISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDD 268 (782)
Q Consensus 190 ~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~e 268 (782)
|+++++++++|+++++++.+...+.........+.... ....+.++..++++++..++.|+..+|+.++. ++.+ .+|
T Consensus 148 ~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~e 225 (558)
T PRK10669 148 QIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARS-AATG-SRE 225 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhC-Cch
Confidence 99999999999999999887765543210000000001 11234455566677777888999999999988 5544 578
Q ss_pred HHHHHHHHHHHHHHHH-HHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhh
Q 003979 269 VYICLTLVGVMVSGFL-TDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEA 347 (782)
Q Consensus 269 ~~~~~~l~~~l~~~~i-~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~ 347 (782)
.+...++++++++++. ++.+|+|+++|||++|+++++ ++.++++.+...++ .++|+|+||+++|+++|+..+.+ .
T Consensus 226 ~~~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~--~ 301 (558)
T PRK10669 226 LFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ--Q 301 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH--H
Confidence 8887778888877764 699999999999999999997 67788888877777 78999999999999999987764 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec---------cChhhHHHHHHHHHHHHHhhh
Q 003979 348 WGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV---------LNDEMFAILVLMALFTTFMTT 418 (782)
Q Consensus 348 ~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl---------i~~~~~~~lv~~~~v~t~i~~ 418 (782)
+...+.++++.+++|++++++.++++|+++|+++.+|++|++||++++++ ++++.|++++++++++++++|
T Consensus 302 ~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P 381 (558)
T PRK10669 302 PLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNP 381 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34445566778999999999999999999999999999999999999988 999999998777766555444
Q ss_pred hhhcc
Q 003979 419 PMRQL 423 (782)
Q Consensus 419 pl~~~ 423 (782)
.+.++
T Consensus 382 ~l~~~ 386 (558)
T PRK10669 382 VLFTL 386 (558)
T ss_pred HHHHH
Confidence 44444
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=9.1e-38 Score=361.85 Aligned_cols=371 Identities=18% Similarity=0.197 Sum_probs=297.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHH
Q 003979 26 AFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLV 105 (782)
Q Consensus 26 ~~~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~ 105 (782)
++..++++++++++++.+++.+++|+++|.+++|+++|+++||+++|.++. +..+..+.++++|+++++|..
T Consensus 3 ~~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~--------~~~~~~~~i~~l~L~~iLF~~ 74 (562)
T PRK05326 3 TINSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF--------DNYPLAYLVGNLALAVILFDG 74 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc--------CcHHHHHHHHHHHHHHHHHcC
Confidence 345678899999999999999999999999999999999999999986531 245678999999999999999
Q ss_pred hhccCchhHHhccchhHHHHHHHHHHHHHHHHHH-HHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccc-
Q 003979 106 GLELDLSSIRQNGKSAFKIALAGITLPFLFGAGV-SLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKL- 183 (782)
Q Consensus 106 Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l- 183 (782)
|+|+|++.+|+++++++.+++.++++|++++..+ .++++.++ ..++++|+++++||++++.++++|.|+
T Consensus 75 Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~---------~~alllgai~s~Td~a~v~~iL~~~~l~ 145 (562)
T PRK05326 75 GLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGLDW---------LEGLLLGAIVGSTDAAAVFSLLRGKGLN 145 (562)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---------HHHHHHhhhhccCchHHHHHHHhccCCC
Confidence 9999999999999999999999999998875443 34444433 678999999999999999999999996
Q ss_pred cCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 003979 184 LTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDN 263 (782)
Q Consensus 184 ~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 263 (782)
++++.++++.+++.+||.++++++.+...+...+ ........++.++..+++.++.++++++.+.|+.||. +.
T Consensus 146 l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~-~~- 218 (562)
T PRK05326 146 LKERVASTLEIESGSNDPMAVFLTITLIELITGG-----ETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRI-AL- 218 (562)
T ss_pred cchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCC-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC-
Confidence 7999999999999999999999888777665532 1111122233444555666677778888899998887 32
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhccccccccc
Q 003979 264 VLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIR 343 (782)
Q Consensus 264 ~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~ 343 (782)
..++.+..++++++++++++++.+|.|+++|+|++|++++|.+...+...+++.....+++.|+||+++|+.+|++.+.
T Consensus 219 -~~~~~~~i~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~ 297 (562)
T PRK05326 219 -PAEGLYPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLL 297 (562)
T ss_pred -chhhHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 1245677888899999999999999999999999999999865444444555555557899999999999999998876
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec---------c-ChhhHHHHHHHHHHH
Q 003979 344 GIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV---------L-NDEMFAILVLMALFT 413 (782)
Q Consensus 344 ~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl---------i-~~~~~~~lv~~~~v~ 413 (782)
+ ..+..+++.+++.+++|+++++++++.+++++||+..+|| .++||++++++ . ++..|++..++++++
T Consensus 298 ~-~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S 375 (562)
T PRK05326 298 D-IALPALLLALFLILVARPLAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVS 375 (562)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHH
Confidence 4 2233333344566899999999999999999999999999 48999999887 2 245667766666666
Q ss_pred HHhhhhhhcc
Q 003979 414 TFMTTPMRQL 423 (782)
Q Consensus 414 t~i~~pl~~~ 423 (782)
+.+.++.+.+
T Consensus 376 ~~i~g~tl~~ 385 (562)
T PRK05326 376 LLLQGTTLPW 385 (562)
T ss_pred HHHHHhhHHH
Confidence 6666655555
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=6.1e-35 Score=309.05 Aligned_cols=271 Identities=27% Similarity=0.480 Sum_probs=229.6
Q ss_pred HHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhcc
Q 003979 39 LTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNG 118 (782)
Q Consensus 39 ~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~ 118 (782)
+++.+++.++||+|+|++++|+++|+++||+.+|.++ ..+.++.++++|+.+++|.+|+|+|++.+|+++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4677889999999999999999999999999988754 235799999999999999999999999999999
Q ss_pred chhHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHH
Q 003979 119 KSAFKIALAGITLP-FLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAA 197 (782)
Q Consensus 119 ~~~~~i~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~ 197 (782)
|+++.+++.++++| +.+++.+.++++.++ ..++++|++++.||++++.++++|+|+.+++.|++++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~ 142 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLLGLAL---------GAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILL 142 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHH
Confidence 99999999999999 667776666665433 56899999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHH
Q 003979 198 FNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVG 277 (782)
Q Consensus 198 i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~ 277 (782)
+||+++++++.+...+.... +.+.....+.+...+++.++.+++.++..+|+.|+. ++++. .|.+...++.+
T Consensus 143 ~~D~~~i~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~~ 214 (273)
T TIGR00932 143 FQDIAVVPLLALLPLLATSA------STEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLT-AELRP-SELFTAGSLLL 214 (273)
T ss_pred HHHHHHHHHHHHHHHHhcCC------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC-chHHHHHHHHH
Confidence 99999999998887665421 112222333344444555566677888899999888 54433 57778888889
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhcccc
Q 003979 278 VMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTD 338 (782)
Q Consensus 278 ~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id 338 (782)
++..+++++.+|.|+++|||++|+++++ .+.++++.++++++. ++|+|+||+++|+++|
T Consensus 215 ~~~~~~la~~~g~s~~lgaf~aGl~~~~-~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 215 MFGSAYFADLLGLSMALGAFLAGVVLSE-SEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHcC-CchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 9999999999999999999999999998 455788999999997 9999999999999987
No 9
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-34 Score=281.97 Aligned_cols=366 Identities=24% Similarity=0.345 Sum_probs=302.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCch
Q 003979 33 QTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLS 112 (782)
Q Consensus 33 ~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~ 112 (782)
.+..-+.++.+++.+..|+|+|+.+||+++|++.||..-|... +......++++|.+++||-+|++++.+
T Consensus 10 tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva----------d~~La~~LAelGViLLmFgvGLhfslk 79 (408)
T COG4651 10 TIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMFGVGLHFSLK 79 (408)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHHhcchheeHH
Confidence 4556677889999999999999999999999999997766542 345566899999999999999999999
Q ss_pred hHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHH
Q 003979 113 SIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTA 192 (782)
Q Consensus 113 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~ 192 (782)
++......++.-++.++.+....+....+.+++++ ...+.+|.++|..|+.+..|.++|.++++++.||++
T Consensus 80 dLLavk~iAipgAl~qia~at~lg~gL~~~lgws~---------~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iA 150 (408)
T COG4651 80 DLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSF---------GTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIA 150 (408)
T ss_pred HHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCc---------ccceeeeehhhhHHHHHHHHHHHHhccccccCceEE
Confidence 99887777777778887777777777777776554 235778999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHH
Q 003979 193 MAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSL-ISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDVYI 271 (782)
Q Consensus 193 l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~ 271 (782)
++--+++|+..++.+.+..+++.....++....+.. ...+...+...|..++.++.|++..|+..+....| ++|.+.
T Consensus 151 iGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tG--srElf~ 228 (408)
T COG4651 151 IGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATG--SRELFT 228 (408)
T ss_pred EeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--cHHHHH
Confidence 999999999999988888776653221111111111 22345567889999999999999999999883333 489999
Q ss_pred HHHHHHHHHHHH-HHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHH
Q 003979 272 CLTLVGVMVSGF-LTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGL 350 (782)
Q Consensus 272 ~~~l~~~l~~~~-i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~ 350 (782)
+.++..+++.++ .++.+|+|+.+|||++|+++++ ++..++..+..-++ .+.|.-+||+++||..|+..+.+ +.+ .
T Consensus 229 L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~e-selshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~-~pl-~ 304 (408)
T COG4651 229 LAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAE-SELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQ-QPL-A 304 (408)
T ss_pred HHHHHHHHHHhhccceeeccchhHHHHHHHHHhcc-hhhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhc-chH-H
Confidence 999999998887 5689999999999999999997 77888888877777 78899999999999999988775 234 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec--------cChhhHHHHHHHHHHHHHhhhhhhc
Q 003979 351 LVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV--------LNDEMFAILVLMALFTTFMTTPMRQ 422 (782)
Q Consensus 351 ~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl--------i~~~~~~~lv~~~~v~t~i~~pl~~ 422 (782)
++..+.+.+.+|-+..+...+.+|.|.|.++.++.++.+.||+++++ +-++.---++++.-+.+++..|+..
T Consensus 305 vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf 384 (408)
T COG4651 305 VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLF 384 (408)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHH
Confidence 45566777899999999999999999999999999999999999988 4446666667888888999999988
Q ss_pred c
Q 003979 423 L 423 (782)
Q Consensus 423 ~ 423 (782)
.
T Consensus 385 ~ 385 (408)
T COG4651 385 A 385 (408)
T ss_pred H
Confidence 7
No 10
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1.2e-37 Score=346.14 Aligned_cols=362 Identities=29% Similarity=0.511 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHH
Q 003979 36 LVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIR 115 (782)
Q Consensus 36 lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~ 115 (782)
++++.+.+.+.++||+++|.+++|+++|+++||.+++..++ + ....+.++++|+.+++|.+|+|+|.+.+|
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~--------~-~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP--------D-NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc--------h-hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34455666677899999999999999999999998885432 1 36688999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHH-HHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHH
Q 003979 116 QNGKSAFKIALAGITLPFLF-GAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMA 194 (782)
Q Consensus 116 ~~~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~l~ 194 (782)
+++++++.+++.++++++.+ ++.+++++. . .+++. ..++++|.+++.||++++.++++|.+..+++.++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~-~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~ 147 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLF-I----LGLSW-AEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLS 147 (380)
T ss_dssp ----------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhc-c----chhhh-HHHhhhHHhhhcccccchhhhhhhhhcccccccchhhh
Confidence 99999999999999999988 666654321 0 12222 56799999999999999999999988899999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHH
Q 003979 195 AAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLT 274 (782)
Q Consensus 195 ~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~ 274 (782)
++++||+++++++.+........ ...+.......++..+....+..++.+++.+|+.|+. ++.++.+...+
T Consensus 148 ~~~i~d~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 218 (380)
T PF00999_consen 148 ESVINDIIAIILLSILISLAQAS-----GQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA----SPSSEIFILLV 218 (380)
T ss_dssp TTTTTTTTTTTTT-------------------------------------------------------------------
T ss_pred hchhhccchhhhhhhhhhhhccc-----ccccccchhcchhhhhhhheeeecccchHHHHhhhhc----cccchhhHHHH
Confidence 99999999999988877766211 1111111111222222222233333333333333331 24467778889
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhccccccccc-chhhHHHHHH
Q 003979 275 LVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIR-GIEAWGLLVL 353 (782)
Q Consensus 275 l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~-~~~~~~~~~~ 353 (782)
++.++..++++|.+|.|+++|+|++|+++++ .+.++++.++++++.++++.|+||+++|+++|++.+. +...+...+.
T Consensus 219 l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~-~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~ 297 (380)
T PF00999_consen 219 LALILLLYGLAEILGLSGILGAFIAGLILSN-SPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLL 297 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhccccccccccccceeeeeehcccc-ccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHH
Confidence 9999999999999999999999999999995 7777889999999977999999999999999998884 2235666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec---------cChhhHHHHHHHHHHHHHhhhhhhc
Q 003979 354 VISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV---------LNDEMFAILVLMALFTTFMTTPMRQ 422 (782)
Q Consensus 354 ~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl---------i~~~~~~~lv~~~~v~t~i~~pl~~ 422 (782)
+++..+++|++++++.+++.|+++|++..+|+.+++||++++++ ++++.+++++.++++++.+.++.++
T Consensus 298 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~ 375 (380)
T PF00999_consen 298 LLIAILLGKFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILS 375 (380)
T ss_dssp -------------------------HHHHTTTTSS--HHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHhhhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHH
Confidence 77777899999999999999999999999999999999999987 6777788887777666655554443
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.96 E-value=3.3e-26 Score=261.71 Aligned_cols=365 Identities=14% Similarity=0.194 Sum_probs=254.7
Q ss_pred cccCCCCCcccHHHHHHHHHHHHHHHHHHHHhhh-ccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHH
Q 003979 16 VWQGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIK-PLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLA 94 (782)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~i~lil~~~~~~~~l~~-rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~ 94 (782)
.|..-++-+.++ .+..++..+++..++..+++ |+.+|..+.++++|+++||.+++..++... .......++ ++
T Consensus 2 ~w~~l~~~~~~l--~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~---g~~d~i~le-It 75 (810)
T TIGR00844 2 IWEQLEVTKAHV--AYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSW---GNTDSITLE-IS 75 (810)
T ss_pred Ccccccccchhh--HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhc---ccchHHHHH-HH
Confidence 355444444332 33344444444445555555 999999999999999999999887654210 001223344 99
Q ss_pred HHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHH
Q 003979 95 SVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVL 174 (782)
Q Consensus 95 ~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv 174 (782)
++++++.+|..|++++.+.+++.|+..+.++..++.+++++++++++++...+ + +..++++|+++++|+|...
T Consensus 76 eIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL------~-~~~ALLLGAILAPTDPVLA 148 (810)
T TIGR00844 76 RILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL------N-FPASLLMGACITATDPVLA 148 (810)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------C-HHHHHHHHhhhcCCcHHHH
Confidence 99999999999999999999999999999999999999988887776652211 1 2678999999999998777
Q ss_pred HHHHH---HccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003979 175 ARILA---DLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPI 251 (782)
Q Consensus 175 ~~il~---el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 251 (782)
..+++ ..+ ++.++..++.+++.+||.++++++.+.+.+...... + ...........++..+++.++++++++++
T Consensus 149 ssV~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~-g-~~~~~~w~l~~~L~~i~~GiliG~vvG~l 225 (810)
T TIGR00844 149 QSVVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGR-G-GEIVKDWICVTILWECIFGSILGCIIGYC 225 (810)
T ss_pred HHHHhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCc-c-ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776 234 678999999999999999999887766655432100 0 00100011222333334444444555555
Q ss_pred HHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHH-HHHHHHHHHHhhhHHHHH
Q 003979 252 MDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVR-LMKKIQDFVSGLLLPLYF 330 (782)
Q Consensus 252 ~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~-l~~~l~~~~~~~f~plfF 330 (782)
..|+.++....+....+.++.+.++++++++.+++.+|.++++++|++|+++.+...+..+ -...+......++..++|
T Consensus 226 ~~~Ll~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lF 305 (810)
T TIGR00844 226 GRKAIRFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYF 305 (810)
T ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHH
Confidence 5555544411111234556777788888888899999999999999999999975432222 123355555678899999
Q ss_pred HHhhcccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHhhcccceeec
Q 003979 331 ASSGLKTDVAKIRG----IEAWGLLVLVISMACAGKILGTFVMALLC--MIPVRESLALGVLMNTKGLVELIV 397 (782)
Q Consensus 331 ~~~G~~id~~~l~~----~~~~~~~~~~v~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~m~~kG~~~lvl 397 (782)
+++|+.+.+..+.. ...|..+++.+++.++.|+.++++.+.+. ..+|+|++++|| .++||..++++
T Consensus 306 VlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyy 377 (810)
T TIGR00844 306 VYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFA 377 (810)
T ss_pred HHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHH
Confidence 99999998776642 12466666667777889998888765443 478999999999 99999988876
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.95 E-value=7.7e-26 Score=258.76 Aligned_cols=358 Identities=17% Similarity=0.137 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhH
Q 003979 35 TLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSI 114 (782)
Q Consensus 35 ~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 114 (782)
..+++++.....+++|+++|.+++++++|+++||...+... +.+ -+.+..+++..++|..|+++|.+.+
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~-------~~~----~~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEV-------PLD----REIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCC-------CCC----HHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34455566677899999999999999999999986443211 111 1234558999999999999999999
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHH
Q 003979 115 RQNGKSAFKIALAGITLPFLFGAGVSLFL-QKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAM 193 (782)
Q Consensus 115 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~l 193 (782)
|++++.++.+++.+++++++++....+++ +.++ ..++++|+++|+|+++++.+++++.+ +++++.+++.
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~~l~~---------~~alllGails~TDpvav~~il~~~~-~p~rl~~il~ 142 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWILGIPL---------ALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLE 142 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH---------HHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHh
Confidence 99999999999999999988766555443 3222 67899999999999999999999988 6889999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHH
Q 003979 194 AAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDVYICL 273 (782)
Q Consensus 194 ~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~ 273 (782)
+++++||..+++++.+...+..+. +..+.....+.++..++..++.++++.++..|+.|+. .++ +.....+
T Consensus 143 gESllND~~alvlf~~~~~~~~~~-----~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~-~~~---~~~~~~l 213 (525)
T TIGR00831 143 GESLLNDGAALVVFAIAVAVALGK-----GVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAK-IDD---PLVEIAL 213 (525)
T ss_pred hhhhhcchHHHHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc---cHHHHHH
Confidence 999999999999999888766421 1122222233333333344455555566666666554 222 3345677
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCch------HHHHHHHHHHHHHhhhHHHHHHHhhccccccccc--c-
Q 003979 274 TLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEF------AVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIR--G- 344 (782)
Q Consensus 274 ~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~------~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~--~- 344 (782)
++++.+++++++|.+|.|+++++|++|+++++..+. .+...+.+......++.+++|+++|++++..... .
T Consensus 214 ~l~~~~~~y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~ 293 (525)
T TIGR00831 214 TILAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKE 293 (525)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 888899999999999999999999999999874332 1222334444557889999999999998742110 0
Q ss_pred hh-h-----HHH---HHHHHHHHHHHHHHHHHHHH--HH-----hCCChHHHHHHHHHHhhcccceeec---cC------
Q 003979 345 IE-A-----WGL---LVLVISMACAGKILGTFVMA--LL-----CMIPVRESLALGVLMNTKGLVELIV---LN------ 399 (782)
Q Consensus 345 ~~-~-----~~~---~~~~v~~~~~~K~i~~~l~~--~~-----~~~~~~~~~~lgl~m~~kG~~~lvl---i~------ 399 (782)
.. . +.. .+++.......|++.++... ++ .+++||++..++| .+.||.+++.+ +.
T Consensus 294 ~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g 372 (525)
T TIGR00831 294 ILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSG 372 (525)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCC
Confidence 00 0 100 11111222345554433321 11 2578999999999 88999988876 11
Q ss_pred ----------hhhHHHHHHHHHHHHHhhhhhhcc
Q 003979 400 ----------DEMFAILVLMALFTTFMTTPMRQL 423 (782)
Q Consensus 400 ----------~~~~~~lv~~~~v~t~i~~pl~~~ 423 (782)
.-.+.+++++.++.+...+|++++
T Consensus 373 ~~~p~r~~i~~~~~~vVl~TllvqG~tlp~l~r~ 406 (525)
T TIGR00831 373 MAFPARYELVFLAAGVILFSLLVQGISLPIFVKR 406 (525)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 112334445555556556667766
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.2e-23 Score=229.69 Aligned_cols=346 Identities=19% Similarity=0.201 Sum_probs=266.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003979 29 LLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLE 108 (782)
Q Consensus 29 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle 108 (782)
..++++.+++.++.+...+.+|++.|.+..+++.|++.||.+++...+- ....-+.+..+.+..++|..|+|
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~--------~~~~~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPD--------LELDPELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcccccc--------ccCChHHHHHHHHHHHHHHhHhc
Confidence 4567888888999999999999999999999999999999988876531 11223334499999999999999
Q ss_pred cCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCch
Q 003979 109 LDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQV 188 (782)
Q Consensus 109 ~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~ 188 (782)
+|.+.+|++++....+++.+++++.+....+.+++.. +++. ..++.+|+++|+|+|.++.+++++.+ .+.++
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~------~i~~-~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri 149 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP------GIPL-AAAFLLGAILSPTDPVAVSPIFKRVR-VPKRI 149 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC------ChhH-HHHHHHhHHhcCCCchhhHHHHhcCC-CCHHH
Confidence 9999999999999999999999988776666666622 2222 67899999999999999999999877 89999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccch
Q 003979 189 GQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDD 268 (782)
Q Consensus 189 g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~e 268 (782)
.+++.+++++||..+++++.+...+.... ...+.......++..++..+.++++.+.+..|+.++....+.....
T Consensus 150 ~~iL~gESl~ND~~giv~f~~~l~~~~~~-----~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~ 224 (429)
T COG0025 150 RTILEGESLLNDGVGIVLFKVALAALLGT-----GAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPL 224 (429)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcc-----CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchH
Confidence 99999999999999999999888877632 1111122233333334444444455555555555555111111244
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcC-----CCCchH-HHHHHHHHHHHHhhhHHHHHHHhhcccccccc
Q 003979 269 VYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIP-----KGGEFA-VRLMKKIQDFVSGLLLPLYFASSGLKTDVAKI 342 (782)
Q Consensus 269 ~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~-----~~~~~~-~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l 342 (782)
....+.+...+..+.++|.+|.|++++++++|+... +..+.. +...+.+......++.-+.|++.|++++...+
T Consensus 225 ~~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~ 304 (429)
T COG0025 225 LETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLL 304 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 557889999999999999999999999999998773 112212 33344455555788899999999999999877
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC------CChHHHHHHHHHHhhcccceeec
Q 003979 343 RGIEAWGLLVLVISMACAGKILGTFVMALLCM------IPVRESLALGVLMNTKGLVELIV 397 (782)
Q Consensus 343 ~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~------~~~~~~~~lgl~m~~kG~~~lvl 397 (782)
... .+..+++.++..+++|++++++..+..+ .+++++++++| -++||.+++.+
T Consensus 305 ~~~-~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~ 363 (429)
T COG0025 305 LAL-GLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLAL 363 (429)
T ss_pred HHh-hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHH
Confidence 652 3556677778889999999999998853 89999999999 89999998877
No 14
>PRK11175 universal stress protein UspE; Provisional
Probab=99.93 E-value=6.6e-25 Score=236.59 Aligned_cols=286 Identities=13% Similarity=0.097 Sum_probs=183.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEA 512 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 512 (782)
-|||+|+|+++....+++.+..++ ++.+.+++++|+++-.....+........... . ....++..+.+++
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~l~~ 73 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLA--QRNGGKITAFLPIYDFSYEMTTLLSPDEREAM----R----QGVISQRTAWIRE 73 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHH--HhcCCCEEEEEeccCchhhhhcccchhHHHHH----H----HHHHHHHHHHHHH
Confidence 379999999999999999988887 44567899999875322111100000000000 0 0001112222333
Q ss_pred Hhh---ccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEE
Q 003979 513 YKQ---LRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAV 589 (782)
Q Consensus 513 ~~~---~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i 589 (782)
..+ ..+++++..+... ++.+++|++.|+++++||||||+|++.+.. +..+|++.+++++++||||++
T Consensus 74 ~~~~~~~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~--------~~~~gs~~~~l~~~~~~pvlv 143 (305)
T PRK11175 74 QAKPYLDAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLE--------SVIFTPTDWHLLRKCPCPVLM 143 (305)
T ss_pred HHHHHhhcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHH--------hhccChhHHHHHhcCCCCEEE
Confidence 222 2456666655432 578999999999999999999999886544 448899999999999999999
Q ss_pred EecCCCCCCCCCcccCccccccceEEEeccCCcch-------HHHHHHHHHHhcCC-CeEEEEEEeeecCcccccccccC
Q 003979 590 LVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDD-------RRALDLGGRMAENP-GGNVTLVRFIGQASRAATSSIAE 661 (782)
Q Consensus 590 ~v~r~~~~~~~~~~~~~~~~~~~~Ilv~~~g~~~~-------~~al~~a~~la~~~-~~~l~vl~v~~~~~~~~~~~~~~ 661 (782)
+.++... ..++|++|+|+++.+ +.++++|.++|+.. ++++|++|+.+.........
T Consensus 144 v~~~~~~-------------~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~--- 207 (305)
T PRK11175 144 VKDQDWP-------------EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIE--- 207 (305)
T ss_pred ecccccC-------------CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhcccc---
Confidence 7432211 467999999998753 67999999999998 99999999986432110000
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHHHHHHhcCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCcccccccccc
Q 003979 662 RPTSDISTENGNSFSRERELDEAAVDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADH 741 (782)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~ 741 (782)
......+. ..+..++..++.++++..+.+-.........+++.+.+...++..++||||||+|| ++|+.+
T Consensus 208 ---~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~-----~~~~~~- 277 (305)
T PRK11175 208 ---LPEFDPSV-YNDAIRGQHLLAMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVG-----RTGLSA- 277 (305)
T ss_pred ---ccccchhh-HHHHHHHHHHHHHHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCc-----cCCCcc-
Confidence 00000000 00001122223444444332111111122234466666555555569999999999 999999
Q ss_pred CCCCcccccchhhhhcCCCCCcccEEEEee
Q 003979 742 QPENVGLGLIGNILASSDHGIFASVLVIQQ 771 (782)
Q Consensus 742 w~e~~~LG~vgd~l~s~d~~~~~sVLvvqq 771 (782)
..+|++++.++++ ++||||||+.
T Consensus 278 ----~llGS~a~~v~~~---~~~pVLvv~~ 300 (305)
T PRK11175 278 ----AFLGNTAEHVIDH---LNCDLLAIKP 300 (305)
T ss_pred ----eeecchHHHHHhc---CCCCEEEEcC
Confidence 5899999999999 9999999974
No 15
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.6e-23 Score=215.17 Aligned_cols=368 Identities=17% Similarity=0.198 Sum_probs=293.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHH
Q 003979 26 AFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLV 105 (782)
Q Consensus 26 ~~~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~ 105 (782)
++..+++.-.++++++.+.+.+..|+|.|..+-.+..|++.|-.++|.++. ++.+.-..++++++++++|..
T Consensus 4 t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f--------dNy~~Ay~vg~lALaiILfdg 75 (574)
T COG3263 4 TINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF--------DNYPFAYMVGNLALAIILFDG 75 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc--------CccHHHHHHHHHHHHHHhhcC
Confidence 444555555578888889999999999999999999999999999997752 356778899999999999999
Q ss_pred hhccCchhHHhccchhHHHHHHHHHHHHHHHHHHH-HHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHcccc
Q 003979 106 GLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVS-LFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLL 184 (782)
Q Consensus 106 Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~ 184 (782)
|+.++.+.+|...++++.++..|++++-.+..+++ |.++.++ ..++++|+++.+|+.+.+..+|.+.+ +
T Consensus 76 G~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~w---------le~~LiGAiVgSTDAAAVF~lL~~~n-l 145 (574)
T COG3263 76 GFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLDW---------LEGLLIGAIVGSTDAAAVFSLLGGKN-L 145 (574)
T ss_pred ccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHH---------HHHHHHHHhhccccHHHHHHHHccCC-h
Confidence 99999999999999999999999999776655555 4455544 67899999999999999999998888 7
Q ss_pred CCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 003979 185 TTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNV 264 (782)
Q Consensus 185 ~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 264 (782)
|.+.+.++..++--||-.++++..-.+.+...+ .++-+. ..+..++...++.++.++..+++..|+++|. .-+
T Consensus 146 ~erv~stLEiESGtNDPmAvfLTitlieli~~g----et~l~~-~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~-nLd- 218 (574)
T COG3263 146 NERVASTLEIESGSNDPMAVFLTITLIELIAGG----ETNLSW-GFLLGFLQQFGLGLLLGLGGGKLLLQLINRI-NLD- 218 (574)
T ss_pred hhhhhhhEEeecCCCCceeeehhHHHHHHHhcc----ccccCH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-ccc-
Confidence 999999999999999999988765555554432 011121 2223355667778888888899999999998 322
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCch-HHHHHHHHHHHHHhhhHHHHHHHhhccccccccc
Q 003979 265 LVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEF-AVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIR 343 (782)
Q Consensus 265 ~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~-~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~ 343 (782)
+..|-.+.++..++.+.+++.+|-|++++.+++|+.+.|.+-. ++.+.+..+.+ .|+.--+.|...|+.+.++.+.
T Consensus 219 --~GL~pil~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~ 295 (574)
T COG3263 219 --SGLYPILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLL 295 (574)
T ss_pred --cchhHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhh
Confidence 5667788899999999999999999999999999999984332 34555666776 7888888999999999999887
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec----------cChhhHHHHHHHHHHH
Q 003979 344 GIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV----------LNDEMFAILVLMALFT 413 (782)
Q Consensus 344 ~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl----------i~~~~~~~lv~~~~v~ 413 (782)
. ...+.+++.+...+++|.+++|+....++.++||+++++| .+-||.+++++ ..+-.|++.-+.++++
T Consensus 296 ~-iavPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvS 373 (574)
T COG3263 296 P-IAIPAILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVS 373 (574)
T ss_pred H-hhHHHHHHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHH
Confidence 6 4566667777888999999999999999999999999999 88999999887 2334455543444444
Q ss_pred HHhhhhhhcc
Q 003979 414 TFMTTPMRQL 423 (782)
Q Consensus 414 t~i~~pl~~~ 423 (782)
-.+.+-.+.|
T Consensus 374 lliQG~tl~~ 383 (574)
T COG3263 374 LLIQGSTLPW 383 (574)
T ss_pred HHHccCcchH
Confidence 4444444444
No 16
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.91 E-value=6.4e-22 Score=226.16 Aligned_cols=368 Identities=13% Similarity=0.141 Sum_probs=248.8
Q ss_pred HHHHHHHHhh-hcc-CCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHh
Q 003979 39 LTSHCLAVLI-KPL-RQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQ 116 (782)
Q Consensus 39 ~~~~~~~~l~-~rl-~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~ 116 (782)
.++.+...+. |+. ++|..+..++.|+++|+...+... .+... -.-+.+-.+.+..++|..|.++|.+.+++
T Consensus 19 ~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~------~~~~~-l~~~lf~~~~LPpIlFe~g~~l~~~~f~~ 91 (559)
T TIGR00840 19 SLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH------IDPPT-LDSSYFFLYLLPPIVLDAGYFMPQRNFFE 91 (559)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC------CccCC-cCHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3334443333 444 499999999999999985432210 00000 11245666788899999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHH
Q 003979 117 NGKSAFKIALAGITLPFLFGAGVSLFLQKAV-HGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAA 195 (782)
Q Consensus 117 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~l~~ 195 (782)
+.+.++.++..+++++.++.....+++.... .+..+.+. ..++++|+++|+|+|..+..++++.+ .+.++..++.++
T Consensus 92 n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~-~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gE 169 (559)
T TIGR00840 92 NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGL-LDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGE 169 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCH-HHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehh
Confidence 9999999999999998766554444332110 00112233 67899999999999999999999999 799999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHH
Q 003979 196 AAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTL 275 (782)
Q Consensus 196 a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l 275 (782)
+++||.++++++.++..+...+.. ..+..+.......+....+..++.+++.+.+..++.|+. ... +.....+++
T Consensus 170 SllNDavaIVLf~~~~~~~~~~~~-~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~-~~~---~~~e~~l~l 244 (559)
T TIGR00840 170 SLLNDAVTVVLYNTFIKFHKTADE-PVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFT-HHI---RQIEPLFVF 244 (559)
T ss_pred hhhhccHHHHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc---chhHHHHHH
Confidence 999999999999888876542100 000001111112111112224555566677777777777 322 234466788
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHhcCCC-----CchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHH
Q 003979 276 VGVMVSGFLTDLIGIHAIFGAFVFGLTIPKG-----GEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGL 350 (782)
Q Consensus 276 ~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~-----~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~ 350 (782)
+..+++++++|.+|.|++++++++|+++.+. ++..+.-.+.+......+...+.|+++|+.+-..... ..|..
T Consensus 245 ~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~--~~~~~ 322 (559)
T TIGR00840 245 LISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHE--WNWAF 322 (559)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh--HHHHH
Confidence 8888999999999999999999999999642 2222223334444457788899999999976322111 13444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHHhhcccceeec---cCh-----------hhHHHHHHHH
Q 003979 351 LVLVISMACAGKILGTFVMALL------CMIPVRESLALGVLMNTKGLVELIV---LND-----------EMFAILVLMA 410 (782)
Q Consensus 351 ~~~~v~~~~~~K~i~~~l~~~~------~~~~~~~~~~lgl~m~~kG~~~lvl---i~~-----------~~~~~lv~~~ 410 (782)
+++.+++.++.|+++++..++. .+++++|.+.++| .+.||.+++.+ ++. ..+.++++++
T Consensus 323 i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~Tv 401 (559)
T TIGR00840 323 VVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTV 401 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHH
Confidence 4455556678899988877654 3589999999999 88899998876 221 1223334455
Q ss_pred HHHHHhhhhhhcc
Q 003979 411 LFTTFMTTPMRQL 423 (782)
Q Consensus 411 ~v~t~i~~pl~~~ 423 (782)
++....++|++++
T Consensus 402 lvqG~T~~pl~~~ 414 (559)
T TIGR00840 402 IFQGGTIKPLVEV 414 (559)
T ss_pred HHHHhhHHHHHHH
Confidence 5666667888888
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.76 E-value=7.9e-17 Score=163.12 Aligned_cols=338 Identities=16% Similarity=0.229 Sum_probs=245.6
Q ss_pred HHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhH
Q 003979 35 TLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSI 114 (782)
Q Consensus 35 ~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 114 (782)
+.+.+++...-++-+++-+..-+.--++|+++||+.++..++.... +......-++.+-+-.=.|.++.|+....+
T Consensus 20 ~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wg----n~d~it~ei~RvvLcvqvfava~eLPr~Y~ 95 (467)
T KOG4505|consen 20 GFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWG----NKDYITYEISRVVLCVQVFAVAMELPRAYM 95 (467)
T ss_pred hHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcccc----CcchhhhhhhhhhHhHHHHHHHHhccHHHH
Confidence 4455566666667777888888888899999999999887663321 234567778999999999999999999999
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccc---cCCchHHH
Q 003979 115 RQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKL---LTTQVGQT 191 (782)
Q Consensus 115 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l---~~s~~g~l 191 (782)
.++++....+-+.-++.-+++.+++.|.+.. ..++ ..++.++...++|+|.....+..+-+. .+.++..+
T Consensus 96 l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p------~lnf-~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~l 168 (467)
T KOG4505|consen 96 LEHWRSIFVLLLPVMIIGWLVSFGFVYALIP------NLNF-LTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNL 168 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccH-HHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHH
Confidence 9999999888777677777777766666642 2233 567889999999997666666665433 56778889
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCC-CCCcccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCCcc
Q 003979 192 AMAAAAFNDVVAWILLALAVSLAGKGSG-AESHHQSSLISIWVLISGVAF----VAFMLIVVRPIMDWVARQCSSDNVLV 266 (782)
Q Consensus 192 ~l~~a~i~D~~~i~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~ 266 (782)
+.+++..||..++.++-+.+.+...... .++. .+ ....++.-..| +.+++++.|..+++..|+. -..
T Consensus 169 L~AESGcNDGMaipflflai~Ll~h~~~r~~~r---dw-v~~~iLyec~fg~llG~vIG~l~r~~lk~aekkr----lid 240 (467)
T KOG4505|consen 169 LAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGR---DW-VCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKR----LID 240 (467)
T ss_pred HHHhcCCCCCcchhHHHHHHHHHhcCchhccCC---ce-ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccc
Confidence 9999999999999998888777654321 1111 11 11122222333 3444445555555444433 344
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHH-HHHHHHHhhhHHHHHHHhhcccccccccch
Q 003979 267 DDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMK-KIQDFVSGLLLPLYFASSGLKTDVAKIRGI 345 (782)
Q Consensus 267 ~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~-~l~~~~~~~f~plfF~~~G~~id~~~l~~~ 345 (782)
.|+++.+-+.+.+.+..+.+.+|++.++-.|.||.+++.+.=+.++..+ ++..+...++.-.||++.|..++++.++.+
T Consensus 241 ~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s 320 (467)
T KOG4505|consen 241 RESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLS 320 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCc
Confidence 7888999999999999999999999999999999999976555544433 566676677888899999999999988754
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHhhccc
Q 003979 346 ----EAWGLLVLVISMACAGKILGTFVMALLC--MIPVRESLALGVLMNTKGL 392 (782)
Q Consensus 346 ----~~~~~~~~~v~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~m~~kG~ 392 (782)
..|..+++.+.+.+.-|+..+++.--+. -.+|||++++|. .+|.|.
T Consensus 321 ~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGV 372 (467)
T KOG4505|consen 321 VEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGV 372 (467)
T ss_pred ccCchHHHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccH
Confidence 3677777666666777777666654333 358999999999 888885
No 18
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.71 E-value=3.6e-16 Score=171.83 Aligned_cols=374 Identities=17% Similarity=0.165 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC---CChhHHHHHHHHhhCccccCC----chhhh-cccCCCCchHHHHHHHHHHHHHH
Q 003979 30 LIIQTTLVLLTSHCLAVLIKPLR---QPKVIAEILGGILLGPSALGR----NKEYL-HLVFPSWSTPILESLASVGLLFF 101 (782)
Q Consensus 30 ~l~~i~lil~~~~~~~~l~~rl~---~P~iv~~il~GillGp~~lg~----~~~~~-~~~fp~~~~~~l~~l~~lgl~~l 101 (782)
-++.++++++++.+.++++++-| +|.-+.-++.|+++|-..... .+.+. -..|.+ +.+-.+-+--+
T Consensus 36 al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPpi 109 (575)
T KOG1965|consen 36 ALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPPI 109 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhchh
Confidence 35556677778889999999988 999999999999998543211 11000 001111 12333334458
Q ss_pred HHHHhhccCchhHHhccchhHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHH
Q 003979 102 LFLVGLELDLSSIRQNGKSAFKIALAGITLP-FLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILAD 180 (782)
Q Consensus 102 lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~e 180 (782)
.|..|.+++-+.++++....+..+..|..+. +++|.++.++..... ..++++ ..++.+|+++|+|+|..+..+++|
T Consensus 110 if~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~--~~~~~f-~d~L~fGaliSATDPVtvLaIfne 186 (575)
T KOG1965|consen 110 IFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLL--IYDLSF-KDCLAFGALISATDPVTVLAIFNE 186 (575)
T ss_pred hhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccc--cccccH-HHHHHHhhHhcccCchHHHHHHHH
Confidence 8999999999999999999999999887775 445555544432111 224444 678999999999999999999999
Q ss_pred ccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003979 181 LKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLI---SIWVLISGVAFVAFMLIVVRPIMDWVAR 257 (782)
Q Consensus 181 l~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 257 (782)
++ ...++-.++.+++++||.++++++..+....... .+... .+..++........++...+-+...+.|
T Consensus 187 l~-vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~-------~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK 258 (575)
T KOG1965|consen 187 LG-VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGS-------LNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLK 258 (575)
T ss_pred hC-CCcceeeeeecchhccchhHHHHHHHHHHHccCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 7889999999999999999999999887765531 11111 2222222211111222222333333344
Q ss_pred HhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCC-----CchHHHHHHHHHHHHHhhhHHHHHHH
Q 003979 258 QCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKG-----GEFAVRLMKKIQDFVSGLLLPLYFAS 332 (782)
Q Consensus 258 ~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~-----~~~~~~l~~~l~~~~~~~f~plfF~~ 332 (782)
+. .-+ ........+++++....++++|.+|+++++..+++|+++++. ++..+.-.+++-.+...+.--+-|++
T Consensus 259 ~~-~l~-~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y 336 (575)
T KOG1965|consen 259 FL-YLR-RTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIY 336 (575)
T ss_pred HH-Hhc-CCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 111 124455788999999999999999999999999999999864 33344444555444467777888999
Q ss_pred hhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------ChHHHHHHHHHHhhcccceeec----
Q 003979 333 SGLK-TDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMI----------PVRESLALGVLMNTKGLVELIV---- 397 (782)
Q Consensus 333 ~G~~-id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~----------~~~~~~~lgl~m~~kG~~~lvl---- 397 (782)
+|+. ++....... ....+....+..+++|..-.+-.+.+.+. +.++...++|.=.-||.+++.+
T Consensus 337 ~Gl~~f~~~k~~~~-~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~ 415 (575)
T KOG1965|consen 337 LGLSAFDFQKHVYK-SLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGD 415 (575)
T ss_pred HhHHHhcccceeee-chHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhh
Confidence 9963 344333221 12234455566677887776666666543 3344455555444688888777
Q ss_pred -cC------hhhHH----HHHHHHHHHHHhhhhhhcc
Q 003979 398 -LN------DEMFA----ILVLMALFTTFMTTPMRQL 423 (782)
Q Consensus 398 -i~------~~~~~----~lv~~~~v~t~i~~pl~~~ 423 (782)
.+ +..++ +.++++++....+.|++++
T Consensus 416 ~~~~~~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~ 452 (575)
T KOG1965|consen 416 FTDSPHTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSY 452 (575)
T ss_pred ccccccccccEEEEeeeeeeeeeeeeeCCccHHHHHH
Confidence 11 11122 2234445555666788887
No 19
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.61 E-value=2.1e-13 Score=148.01 Aligned_cols=260 Identities=20% Similarity=0.287 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHH
Q 003979 88 PILESLASVGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIF 161 (782)
Q Consensus 88 ~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 161 (782)
...+-+-+.-+.++.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-+. +.... + ...--
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~----~n~~~----~----~~~~G 128 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVA----VNLAG----G----GALRG 128 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHH----HhCCc----h----hhhhh
Confidence 3445566666788999999999655442 122222 34567788888644332 21111 0 11223
Q ss_pred HHHHHhhccHHHHHHHHHHccc-cCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 003979 162 MGVSLSITAFPVLARILADLKL-LTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAF 240 (782)
Q Consensus 162 l~~~~s~Ts~~vv~~il~el~l-~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
+|+- ..|+.+....+|..+|. .++.++..+++.+++||+.++++++++.+ ++.+.. +.......+
T Consensus 129 W~Ip-~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt----------~~i~~~---~L~~a~~~~ 194 (423)
T PRK14853 129 WAIP-TATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYT----------SELNLE---ALLLALVPL 194 (423)
T ss_pred hhhh-hhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccC----------CCCCHH---HHHHHHHHH
Confidence 3333 34788888999999874 48899999999999999999999887651 122222 221111111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCC-----------ch
Q 003979 241 VAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGG-----------EF 309 (782)
Q Consensus 241 ~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~-----------~~ 309 (782)
+.. |+.+|. + +++.+.++++ .+.+.+..+..|+|+.+|+|++|+++|..+ +.
T Consensus 195 --~~l--------~~l~~~-~----V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p 257 (423)
T PRK14853 195 --ALF--------WLLVQK-R----VRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGL 257 (423)
T ss_pred --HHH--------HHHHHc-C----CchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCH
Confidence 111 222233 1 2334444444 336667899999999999999999998411 23
Q ss_pred HHHHHHHHHHHHHhhhHHHH-HHHhhccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCh
Q 003979 310 AVRLMKKIQDFVSGLLLPLY-FASSGLKTDV-AKIRGIEAWGLLVLVISMACAGKILGTFVMALLC----------MIPV 377 (782)
Q Consensus 310 ~~~l~~~l~~~~~~~f~plf-F~~~G~~id~-~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~----------~~~~ 377 (782)
.+++++++++++..+++|+| |+..|.++|. ..+.+...-.....+++..+++|.+|.+..++.. +++|
T Consensus 258 ~~rle~~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~ 337 (423)
T PRK14853 258 AEHLEHRLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTW 337 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCH
Confidence 57899999999999999999 9999999986 4342211112455667778899999877776654 4678
Q ss_pred HHHHHHHHHHhhcc
Q 003979 378 RESLALGVLMNTKG 391 (782)
Q Consensus 378 ~~~~~lgl~m~~kG 391 (782)
++-..+|+ ++..|
T Consensus 338 ~~l~gv~~-L~GIG 350 (423)
T PRK14853 338 IDVFGVAL-LAGIG 350 (423)
T ss_pred HHHHHHHH-HHHHH
Confidence 88777666 44444
No 20
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.53 E-value=1.1e-13 Score=129.47 Aligned_cols=131 Identities=20% Similarity=0.299 Sum_probs=99.0
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHHH
Q 003979 434 RIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAY 513 (782)
Q Consensus 434 rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 513 (782)
|||||++++++...+++.+..++. ..+.+++++|+++.+....... .. . . ....++..+.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~--~~~~~v~ll~v~~~~~~~~~~~--~~---~-----~----~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALAR--AQNGEIIPLNVIEVPNHSSPSQ--LE---V-----N----VQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhh--cCCCeEEEEEEEecCCCCCcch--hH---H-----H----HHHHHHHHHHHHHH
Confidence 699999999999999999999984 3678999999998765433210 00 0 0 02234444444444
Q ss_pred hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEE
Q 003979 514 KQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVL 590 (782)
Q Consensus 514 ~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~ 590 (782)
.+..+++++..+..+ +++.++|++.|++.++|+||||+|++++.. +..+||++++|++++||||+++
T Consensus 65 ~~~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~--------~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 65 AASLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLR--------DRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred hhhcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCcc--------ceecCchHHHHHhcCCCCEEEe
Confidence 444556777666554 578999999999999999999999988664 4588999999999999999986
No 21
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.46 E-value=4.8e-13 Score=127.66 Aligned_cols=139 Identities=12% Similarity=0.090 Sum_probs=95.7
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHHHHh
Q 003979 613 RVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDFMRK 692 (782)
Q Consensus 613 ~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 692 (782)
+||+|+||++.++.|+++|.++++..+++++++|++++........ ... ..... ..+..++..++.++++...
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~-----~~~-~~~~~-~~~~~~~~~~~~l~~~~~~ 73 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSS-----GKL-EVASA-YKQEEDKEAKELLLPYRCF 73 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCc-----cch-HHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999997543211000 000 00000 0011233444566655544
Q ss_pred -cCCcEEEEEEEec--ChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccc-cchhhhhcCCCCCc--ccE
Q 003979 693 -WGGSVEYEEKVMA--NVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLG-LIGNILASSDHGIF--ASV 766 (782)
Q Consensus 693 -~~~~v~~~e~~v~--~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG-~vgd~l~s~d~~~~--~sV 766 (782)
....+.+....+. ++.+.+...++..++||||||+|| ++|+.+ ..+| ++++.++++ ++ |||
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g-----~~~l~~-----~~~gssva~~Vi~~---a~~~c~V 140 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASS-----DNHFSM-----KFKKSDVASSVLKE---APDFCTV 140 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccC-----CCceee-----cccCCchhHHHHhc---CCCCceE
Confidence 2233444444433 566666666666669999999999 999998 4777 699999999 99 999
Q ss_pred EEEee
Q 003979 767 LVIQQ 771 (782)
Q Consensus 767 Lvvqq 771 (782)
|||+.
T Consensus 141 lvv~~ 145 (146)
T cd01989 141 YVVSK 145 (146)
T ss_pred EEEeC
Confidence 99985
No 22
>PRK15456 universal stress protein UspG; Provisional
Probab=99.45 E-value=6.3e-13 Score=126.32 Aligned_cols=137 Identities=14% Similarity=0.135 Sum_probs=91.5
Q ss_pred cceEEEeccCCc--chHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHH
Q 003979 611 LKRVCIIFFGGP--DDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDD 688 (782)
Q Consensus 611 ~~~Ilv~~~g~~--~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 688 (782)
++|||+|+||++ .++.|+++|.++|+.. ++++++|++++........ . .. ..+. ..+..++..++.+++
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~----~-~~--~~~~-~~~~~~~~~~~~l~~ 72 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHR----F-AA--DVRR-FEEHLQHEAEERLQT 72 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccc----c-cc--chhh-HHHHHHHHHHHHHHH
Confidence 579999999994 8999999999999874 6999999997542110000 0 00 0000 001133444556666
Q ss_pred HHHh-cCCcEEEEEEE-ecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccE
Q 003979 689 FMRK-WGGSVEYEEKV-MANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASV 766 (782)
Q Consensus 689 ~~~~-~~~~v~~~e~~-v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sV 766 (782)
+..+ ......+.... .+++.+.+...++..++||||||+|| + |+.+ ..+||+++.++++ ++|||
T Consensus 73 ~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g-----~-~~~~-----~llGS~a~~v~~~---a~~pV 138 (142)
T PRK15456 73 MVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRN-----P-SIST-----HLLGSNASSVIRH---ANLPV 138 (142)
T ss_pred HHHHhCCCCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCC-----C-Cccc-----eecCccHHHHHHc---CCCCE
Confidence 6544 22223333322 34466666666665569999999999 6 4777 4899999999999 99999
Q ss_pred EEEe
Q 003979 767 LVIQ 770 (782)
Q Consensus 767 Lvvq 770 (782)
|||+
T Consensus 139 LvV~ 142 (142)
T PRK15456 139 LVVR 142 (142)
T ss_pred EEeC
Confidence 9985
No 23
>PRK15005 universal stress protein F; Provisional
Probab=99.43 E-value=1e-12 Score=125.03 Aligned_cols=138 Identities=12% Similarity=0.140 Sum_probs=92.3
Q ss_pred cceEEEeccCCcc--hHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCC-cchhhhhHHHHHH
Q 003979 611 LKRVCIIFFGGPD--DRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNS-FSRERELDEAAVD 687 (782)
Q Consensus 611 ~~~Ilv~~~g~~~--~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 687 (782)
+++||+|+||+++ ++.|+++|.++|+..+++++++|++++........ .. ...... .+..++..++.++
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~l~ 73 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLG-----LA---YSAELPAMDDLKAEAKSQLE 73 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCccccccc-----cc---ccccchHHHHHHHHHHHHHH
Confidence 5789999999998 57999999999999999999999997532110000 00 000000 0112333344555
Q ss_pred HHHHh-cCCcEEEEEEE-ecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCccc
Q 003979 688 DFMRK-WGGSVEYEEKV-MANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFAS 765 (782)
Q Consensus 688 ~~~~~-~~~~v~~~e~~-v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~s 765 (782)
++..+ ....+.+.... .+++.+.+...++..++||||||+|+ .|+.+ ..+||+++.++++ ++||
T Consensus 74 ~~~~~~~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~------~~~~~-----~llGS~a~~vl~~---a~cp 139 (144)
T PRK15005 74 EIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASHR------PDITT-----YLLGSNAAAVVRH---AECS 139 (144)
T ss_pred HHHHHhCCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCCC------CCchh-----eeecchHHHHHHh---CCCC
Confidence 55544 22222223322 34466766666666669999999986 47888 4899999999999 9999
Q ss_pred EEEEe
Q 003979 766 VLVIQ 770 (782)
Q Consensus 766 VLvvq 770 (782)
||||+
T Consensus 140 VlvVr 144 (144)
T PRK15005 140 VLVVR 144 (144)
T ss_pred EEEeC
Confidence 99985
No 24
>PRK09982 universal stress protein UspD; Provisional
Probab=99.41 E-value=9.1e-13 Score=125.25 Aligned_cols=135 Identities=11% Similarity=0.143 Sum_probs=92.1
Q ss_pred cceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHHH
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDFM 690 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 690 (782)
+++||+|+||+++++.|+++|.++|+.+++++|++|++++....... . .....+. ..+..++..++.+++..
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~-----~--~~~~~~~-~~~~~~~~~~~~l~~~~ 74 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPG-----I--YFPATED-ILQLLKNKSDNKLYKLT 74 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchh-----h--hccchHH-HHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998753211000 0 0000000 00112233344555555
Q ss_pred HhcC-CcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEE
Q 003979 691 RKWG-GSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVI 769 (782)
Q Consensus 691 ~~~~-~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLvv 769 (782)
.... ..+. .....+++.+.+...++..++||||||+ | ++|+++ .+| +++.++++ ++||||||
T Consensus 75 ~~~~~~~~~-~~v~~G~p~~~I~~~A~~~~aDLIVmG~-~-----~~~~~~------~~~-va~~V~~~---s~~pVLvv 137 (142)
T PRK09982 75 KNIQWPKTK-LRIERGEMPETLLEIMQKEQCDLLVCGH-H-----HSFINR------LMP-AYRGMINK---MSADLLIV 137 (142)
T ss_pred HhcCCCcce-EEEEecCHHHHHHHHHHHcCCCEEEEeC-C-----hhHHHH------HHH-HHHHHHhc---CCCCEEEe
Confidence 4421 1222 2233456777777777777799999997 5 689999 346 99999999 99999999
Q ss_pred e
Q 003979 770 Q 770 (782)
Q Consensus 770 q 770 (782)
+
T Consensus 138 ~ 138 (142)
T PRK09982 138 P 138 (142)
T ss_pred c
Confidence 6
No 25
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.39 E-value=1.9e-12 Score=123.33 Aligned_cols=141 Identities=15% Similarity=0.113 Sum_probs=89.6
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
.++|||+|+||++.++.|+++|..+|+.++++++++|+.++........ . ...... ..++.++..++.++++
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~-----~--~~~~~~-~~~~~~~~~~~~l~~~ 73 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGL-----I--DVNLGD-MQKRISEETHHALTEL 73 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhh-----h--hcchHH-HHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999953321100000 0 000000 0011122222344444
Q ss_pred HHhcCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEE
Q 003979 690 MRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVI 769 (782)
Q Consensus 690 ~~~~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLvv 769 (782)
....+-.+.......+++.+.+...++..++||||||+|| + ++ + .+||+++.++++ ++||||||
T Consensus 74 ~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-----~-~~-~------~lgSva~~v~~~---a~~pVLvv 137 (144)
T PRK15118 74 STNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-----D-FW-S------KLMSSARQLINT---VHVDMLIV 137 (144)
T ss_pred HHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-----c-HH-H------HHHHHHHHHHhh---CCCCEEEe
Confidence 3322112222222345676766666666669999999998 3 33 3 268999999999 99999999
Q ss_pred eeccc
Q 003979 770 QQHNV 774 (782)
Q Consensus 770 qq~~~ 774 (782)
+....
T Consensus 138 ~~~~~ 142 (144)
T PRK15118 138 PLRDE 142 (144)
T ss_pred cCCcC
Confidence 96443
No 26
>PRK15456 universal stress protein UspG; Provisional
Probab=99.37 E-value=2.5e-12 Score=122.15 Aligned_cols=134 Identities=10% Similarity=0.085 Sum_probs=89.5
Q ss_pred ceEEEEecCCC--ChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHH
Q 003979 433 FRIQACVHGPE--NVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSF 510 (782)
Q Consensus 433 ~rILvpv~~~~--~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 510 (782)
.|||+|+|+++ ++..+++.+..++. .. .+++++|+++...... . .. ...+... .+ ....++..+.+
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~--~~-~~l~llhv~~~~~~~~-~--~~-~~~~~~~-~~----~~~~~~~~~~l 70 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQ--DD-GVIHLLHVLPGSASLS-L--HR-FAADVRR-FE----EHLQHEAEERL 70 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHh--cC-CeEEEEEEecCccccc-c--cc-cccchhh-HH----HHHHHHHHHHH
Confidence 37999999985 89999998888763 23 4899999987532111 0 00 0000000 00 01122333334
Q ss_pred HHHhhc---cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCce
Q 003979 511 EAYKQL---RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSV 587 (782)
Q Consensus 511 ~~~~~~---~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V 587 (782)
+++.+. .+.++++.+.. ++..++|++.|++.++||||||.|+++ .. +.++||++++|++++||||
T Consensus 71 ~~~~~~~~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~--------~~llGS~a~~v~~~a~~pV 138 (142)
T PRK15456 71 QTMVSHFTIDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNPS-IS--------THLLGSNASSVIRHANLPV 138 (142)
T ss_pred HHHHHHhCCCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCCC-cc--------ceecCccHHHHHHcCCCCE
Confidence 433322 34566666543 588999999999999999999999864 44 4488999999999999999
Q ss_pred EEE
Q 003979 588 AVL 590 (782)
Q Consensus 588 ~i~ 590 (782)
+|+
T Consensus 139 LvV 141 (142)
T PRK15456 139 LVV 141 (142)
T ss_pred EEe
Confidence 986
No 27
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.35 E-value=4.4e-12 Score=121.03 Aligned_cols=137 Identities=11% Similarity=0.107 Sum_probs=92.2
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHHH
Q 003979 434 RIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAY 513 (782)
Q Consensus 434 rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 513 (782)
+||+|+|+++++..+++.+..++. +...+++++|+++.+............... ... ...++..+.++++
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~--~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~l~~~ 70 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLA--TKGQTIVLVHVHPPITSIPSSSGKLEVASA---YKQ-----EEDKEAKELLLPY 70 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhcc--CCCCcEEEEEeccCcccCCCCccchHHHHH---HHH-----HHHHHHHHHHHHH
Confidence 599999999999999999887763 457799999998753221110000000000 000 1112333333433
Q ss_pred hh---ccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchH-HHHHHHhhcCC--Cce
Q 003979 514 KQ---LRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWR-EVNRTVLQNAP--CSV 587 (782)
Q Consensus 514 ~~---~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~-~v~~~Vl~~ap--c~V 587 (782)
.+ ..++.+++.+... +++++.|+++|++.++|+||||.|+++++. +.++| |+.++|++++| |||
T Consensus 71 ~~~~~~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~--------~~~~gssva~~Vi~~a~~~c~V 140 (146)
T cd01989 71 RCFCSRKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFS--------MKFKKSDVASSVLKEAPDFCTV 140 (146)
T ss_pred HHHHhhcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCcee--------ecccCCchhHHHHhcCCCCceE
Confidence 32 2456666655433 478999999999999999999999998765 34666 69999999999 999
Q ss_pred EEE
Q 003979 588 AVL 590 (782)
Q Consensus 588 ~i~ 590 (782)
+++
T Consensus 141 lvv 143 (146)
T cd01989 141 YVV 143 (146)
T ss_pred EEE
Confidence 996
No 28
>PRK15005 universal stress protein F; Provisional
Probab=99.34 E-value=5.7e-12 Score=119.90 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=87.7
Q ss_pred eEEEEecCCCC--hhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHH
Q 003979 434 RIQACVHGPEN--VPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFE 511 (782)
Q Consensus 434 rILvpv~~~~~--~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 511 (782)
|||+|+|++++ +..+++.+..++ ++.+.+++++|+++............ ....+..+ ...++..+.++
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la--~~~~~~l~ll~v~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~l~ 73 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEA--KIDDAEVHFLTVIPSLPYYASLGLAY---SAELPAMD-----DLKAEAKSQLE 73 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHH--hccCCeEEEEEEEccCcccccccccc---cccchHHH-----HHHHHHHHHHH
Confidence 69999999998 467887777666 34677899999997532111100000 00000000 11122233344
Q ss_pred HHhhc---cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceE
Q 003979 512 AYKQL---RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVA 588 (782)
Q Consensus 512 ~~~~~---~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~ 588 (782)
++.+. .+++++..+.. ++..+.|++.|++.++||||||.|+ .+.. +.++||+.++|++++||||+
T Consensus 74 ~~~~~~~~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~--------~~llGS~a~~vl~~a~cpVl 141 (144)
T PRK15005 74 EIIKKFKLPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHR-PDIT--------TYLLGSNAAAVVRHAECSVL 141 (144)
T ss_pred HHHHHhCCCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCC-CCch--------heeecchHHHHHHhCCCCEE
Confidence 33332 34455555543 5889999999999999999999984 3444 44899999999999999999
Q ss_pred EE
Q 003979 589 VL 590 (782)
Q Consensus 589 i~ 590 (782)
++
T Consensus 142 vV 143 (144)
T PRK15005 142 VV 143 (144)
T ss_pred Ee
Confidence 86
No 29
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.34 E-value=4.1e-11 Score=127.91 Aligned_cols=259 Identities=22% Similarity=0.281 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCchhHHHH
Q 003979 88 PILESLASVGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLFGAGVSLFLQKAVH-GENKVGYGQFII 160 (782)
Q Consensus 88 ~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l 160 (782)
...+-+.+.=+.++.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=. .+....+ ...+|.. +.+-
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~----~~n~~~~~~~~GW~I-P~AT 125 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYL----AFNANDPITREGWAI-PAAT 125 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHh----heecCCCcccCcccc-ccHH
Confidence 3445566666788999999999887764 233333 3345667777754322 2211111 0234433 1111
Q ss_pred HHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 003979 161 FMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAF 240 (782)
Q Consensus 161 ~l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
= ++|++-.-.+-..+ .+..+...+++-+++||+.++++.++..+ ++.+ ..+.......+
T Consensus 126 D-------iAFalgvlallG~~-vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----------~~i~---~~~L~~a~~~~ 184 (373)
T TIGR00773 126 D-------IAFALGVMALLGKR-VPLALKIFLLALAIIDDLGAIVIIALFYT----------NDLS---MAALLVAAVAI 184 (373)
T ss_pred H-------HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHhheeeecC----------CCCC---HHHHHHHHHHH
Confidence 1 22322222222223 67788999999999999999988776542 1122 22222222111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCch----HHHHHHH
Q 003979 241 VAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEF----AVRLMKK 316 (782)
Q Consensus 241 ~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~----~~~l~~~ 316 (782)
. + .++.+|. . .++...+..+.. +..+. ....|+|+.+|+|++|+++|+..+. .+++++.
T Consensus 185 ~-~---------l~~~~~~-~----v~~~~~y~~lgv-llW~~-~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~ 247 (373)
T TIGR00773 185 A-V---------LAVLNRC-G----VRRLGPYMLVGV-ILWFA-VLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHV 247 (373)
T ss_pred H-H---------HHHHHHc-C----CchhhHHHHHHH-HHHHH-HHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHH
Confidence 1 1 1223333 1 133333333333 33333 3799999999999999999974332 3567777
Q ss_pred HHHHHHhhhHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHH
Q 003979 317 IQDFVSGLLLPLY-FASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLC----------MIPVRESLALGV 385 (782)
Q Consensus 317 l~~~~~~~f~plf-F~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl 385 (782)
+++.+..+++|+| |+..|.++|...+.. ........+++..+++|.+|++..++.. +++|++-..+|+
T Consensus 248 L~p~v~~lilPlFAFanAGv~l~~~~~~~-~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~ 326 (373)
T TIGR00773 248 LHPWVAYLILPLFAFANAGVSLQGVSLNG-LTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV 326 (373)
T ss_pred HHHHHHHHHHHHHHHHhcCeeeecCcchh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 7777889999999 999999998755433 2223456777888999999999887765 467787776666
Q ss_pred HHhhcc
Q 003979 386 LMNTKG 391 (782)
Q Consensus 386 ~m~~kG 391 (782)
++..|
T Consensus 327 -L~GIG 331 (373)
T TIGR00773 327 -LCGIG 331 (373)
T ss_pred -HHHHH
Confidence 44444
No 30
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.32 E-value=1.8e-11 Score=114.27 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=90.3
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHHHHh
Q 003979 613 RVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDFMRK 692 (782)
Q Consensus 613 ~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 692 (782)
||++|+||+++++.++++|.++|+..+++++++|+.++...... .... ...+..++.++++...
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~-----------~~~~-----~~~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP-----------SQLE-----VNVQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc-----------chhH-----HHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999975432110 0000 1223333444444433
Q ss_pred ---cCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEE
Q 003979 693 ---WGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVI 769 (782)
Q Consensus 693 ---~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLvv 769 (782)
.+..+.+....-+++.+.+...++..++||||||+++ ++++.+ ..+|++.+.++++ ++||||+|
T Consensus 65 ~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~-----~~~~~~-----~~lGs~~~~v~~~---~~~pvlvv 131 (132)
T cd01988 65 AASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHG-----STSLRD-----RLFGGVIDQVLES---APCDVAVV 131 (132)
T ss_pred hhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCC-----CCCccc-----eecCchHHHHHhc---CCCCEEEe
Confidence 1222222222223455555555555559999999999 777777 5899999999999 99999998
Q ss_pred e
Q 003979 770 Q 770 (782)
Q Consensus 770 q 770 (782)
+
T Consensus 132 ~ 132 (132)
T cd01988 132 K 132 (132)
T ss_pred C
Confidence 5
No 31
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.32 E-value=6.7e-12 Score=116.18 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=90.0
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHHHHh
Q 003979 613 RVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDFMRK 692 (782)
Q Consensus 613 ~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 692 (782)
||++|+|+++.+++++++|.++|+..+++++++|+.++.... ..+..++.+++++..
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~-----------------------~~~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR-----------------------LSEAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc-----------------------CCHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999998754320 111123344444433
Q ss_pred -cCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCC-cccEEEE
Q 003979 693 -WGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGI-FASVLVI 769 (782)
Q Consensus 693 -~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~-~~sVLvv 769 (782)
..-.+.+....-.++.+.+....+..++|++|||+|+ ++++++ ..+|++++.++.+ + +|+|||+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~-----~~~~~~-----~~~Gs~~~~v~~~---a~~~~v~v~ 123 (124)
T cd01987 58 AEELGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKSR-----RSRWRE-----LFRGSLVDRLLRR---AGNIDVHIV 123 (124)
T ss_pred HHHcCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCC-----CchHHH-----HhcccHHHHHHHh---CCCCeEEEe
Confidence 1112333333334466666666666569999999999 899999 6999999999999 8 9999997
No 32
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.32 E-value=8.4e-12 Score=118.84 Aligned_cols=135 Identities=7% Similarity=0.034 Sum_probs=86.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEA 512 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 512 (782)
-|||+|+|++++...+++.+..++ +..+.+++++|+........... . ........ ....++..+.+++
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~----~-~~~~~~~~----~~~~~~~~~~l~~ 72 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMA--RPYNAKVSLIHVDVNYSDLYTGL----I-DVNLGDMQ----KRISEETHHALTE 72 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHH--HhhCCEEEEEEEccChhhhhhhh----h-hcchHHHH----HHHHHHHHHHHHH
Confidence 379999999999999998888777 33567899999942111110000 0 00000000 0112333344455
Q ss_pred HhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEe
Q 003979 513 YKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLV 591 (782)
Q Consensus 513 ~~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v 591 (782)
+.+..++.+..... ..++.++.|++.|++.++||||||.|++ .. + .+||++++|+++|||||+++.
T Consensus 73 ~~~~~~~~~~~~~~--~~G~p~~~I~~~a~~~~~DLIV~Gs~~~-~~---------~-~lgSva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 73 LSTNAGYPITETLS--GSGDLGQVLVDAIKKYDMDLVVCGHHQD-FW---------S-KLMSSARQLINTVHVDMLIVP 138 (144)
T ss_pred HHHhCCCCceEEEE--EecCHHHHHHHHHHHhCCCEEEEeCccc-HH---------H-HHHHHHHHHHhhCCCCEEEec
Confidence 44433444322222 2268899999999999999999999963 11 2 367999999999999999973
No 33
>PRK10116 universal stress protein UspC; Provisional
Probab=99.31 E-value=9.2e-12 Score=118.20 Aligned_cols=137 Identities=12% Similarity=0.177 Sum_probs=90.5
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
.++||++++|++++++.|+++|.++|+.+++++|+++++++...... . . ........+..++..++.++++
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~-~-------~-~~~~~~~~~~~~~~~~~~l~~~ 72 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQ-F-------A-APMLEDLRSVMQEETQSFLDKL 72 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchh-h-------h-HHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999864321000 0 0 0000000011222233445554
Q ss_pred HHhcCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEE
Q 003979 690 MRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVI 769 (782)
Q Consensus 690 ~~~~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLvv 769 (782)
..+.+-.........+++.+.+....+..++||||||+|+ ++++++ | +++++.++++ ++||||||
T Consensus 73 ~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~-----~~~~~~-~------~s~a~~v~~~---~~~pVLvv 137 (142)
T PRK10116 73 IQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHN-----HSFFSR-A------SCSAKRVIAS---SEVDVLLV 137 (142)
T ss_pred HHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCc-----chHHHH-H------HHHHHHHHhc---CCCCEEEE
Confidence 4332111221222234456666666655569999999999 889988 4 3789999999 99999999
Q ss_pred e
Q 003979 770 Q 770 (782)
Q Consensus 770 q 770 (782)
.
T Consensus 138 ~ 138 (142)
T PRK10116 138 P 138 (142)
T ss_pred e
Confidence 7
No 34
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.29 E-value=1.6e-11 Score=114.92 Aligned_cols=134 Identities=23% Similarity=0.338 Sum_probs=94.8
Q ss_pred cceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHH---
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVD--- 687 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--- 687 (782)
++||++|+|+++++++|+++|.++|+..+++++++|+.+......... .... .......+....
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~----------~~~~---~~~~~~~~~~~~~~~ 68 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSA----------AEDE---ESEEEAEEEEQARQA 68 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHH----------HHHH---HHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccccc----------cccc---ccccccchhhhhhhH
Confidence 579999999999999999999999999999999999998654321100 0000 000000000000
Q ss_pred --HHHHhcCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCccc
Q 003979 688 --DFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFAS 765 (782)
Q Consensus 688 --~~~~~~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~s 765 (782)
+................+++.+.+....+..++||||||+++ ++++++ ..+|++++.++++ ++||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~-----~~~~~~-----~~~gs~~~~l~~~---~~~p 135 (140)
T PF00582_consen 69 EAEEAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRG-----RSGLER-----LLFGSVAEKLLRH---APCP 135 (140)
T ss_dssp HHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSS-----TTSTTT-----SSSHHHHHHHHHH---TSSE
T ss_pred HHHHHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccC-----CCCccC-----CCcCCHHHHHHHc---CCCC
Confidence 011113445556666677777766666666669999999999 888888 4899999999999 9999
Q ss_pred EEEEe
Q 003979 766 VLVIQ 770 (782)
Q Consensus 766 VLvvq 770 (782)
||||+
T Consensus 136 Vlvv~ 140 (140)
T PF00582_consen 136 VLVVP 140 (140)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99985
No 35
>PRK09982 universal stress protein UspD; Provisional
Probab=99.28 E-value=1.2e-11 Score=117.43 Aligned_cols=132 Identities=8% Similarity=0.097 Sum_probs=85.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHHH
Q 003979 434 RIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAY 513 (782)
Q Consensus 434 rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 513 (782)
|||+|+|+++++..+++.+..++ ++.+.+++++|+++......... .....+. .. ....++..+.+++.
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA--~~~~a~l~llhV~~~~~~~~~~~--~~~~~~~---~~----~~~~~~~~~~l~~~ 73 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELA--RHNDAHLTLIHIDDGLSELYPGI--YFPATED---IL----QLLKNKSDNKLYKL 73 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHH--HHhCCeEEEEEEccCcchhchhh--hccchHH---HH----HHHHHHHHHHHHHH
Confidence 69999999999999999888877 44678999999986432111100 0000000 00 01112222334443
Q ss_pred hhc-cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEE
Q 003979 514 KQL-RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVL 590 (782)
Q Consensus 514 ~~~-~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~ 590 (782)
.+. ....++..+.. +++++.|++.|++.++||||||.| +++.. ..++ ++++|+++++|||+|+
T Consensus 74 ~~~~~~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~---------~~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 74 TKNIQWPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HSFIN---------RLMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred HHhcCCCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hhHHH---------HHHH-HHHHHHhcCCCCEEEe
Confidence 332 22234444433 589999999999999999999976 44322 2444 9999999999999997
No 36
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.20 E-value=1.1e-10 Score=108.14 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=88.7
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHHH
Q 003979 434 RIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAY 513 (782)
Q Consensus 434 rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 513 (782)
|||+|+++++....+++.+..++. +.+..++++|+.+-... .. . ...++..+.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~--~~~~~l~ll~v~~~~~~--~~--------------~-----~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLAD--RLKAPWYVVYVETPRLN--RL--------------S-----EAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHH--HhCCCEEEEEEecCccc--cC--------------C-----HHHHHHHHHHHHH
Confidence 699999999999999999988874 36778999999863211 00 0 1122333333333
Q ss_pred hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcC-CCceEEE
Q 003979 514 KQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNA-PCSVAVL 590 (782)
Q Consensus 514 ~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~a-pc~V~i~ 590 (782)
.+..++. ..+..+ ++..+.|++.+++.++|+||||+|+++... +..+||+.++|+++| ||||.|+
T Consensus 58 ~~~~~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~--------~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 58 AEELGAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWR--------ELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHcCCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHH--------HHhcccHHHHHHHhCCCCeEEEe
Confidence 3323333 223333 578999999999999999999999987665 558999999999999 9999985
No 37
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.19 E-value=2.1e-11 Score=133.82 Aligned_cols=355 Identities=14% Similarity=0.208 Sum_probs=226.1
Q ss_pred HHHHHHhhhccC--CChhHHHHHHHHhhCccccCC--chh-------hhcccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 003979 41 SHCLAVLIKPLR--QPKVIAEILGGILLGPSALGR--NKE-------YLHLVFPSWSTPILESLASVGLLFFLFLVGLEL 109 (782)
Q Consensus 41 ~~~~~~l~~rl~--~P~iv~~il~GillGp~~lg~--~~~-------~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~ 109 (782)
+.+.--+..+++ .|.=.-.|+.|+++|-...+. ..+ |+-++.|| ++|-+|.-|
T Consensus 54 aKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPP----------------IvlDAGYfM 117 (670)
T KOG1966|consen 54 AKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPP----------------IVLDAGYFM 117 (670)
T ss_pred HHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccccccccccchhhhhcCH----------------HHhcccccC
Confidence 333333344444 677777788888888544322 211 22223333 789999999
Q ss_pred CchhHHhccchhHHHHHHHHHHHHH-HHHHHHHH-HHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCc
Q 003979 110 DLSSIRQNGKSAFKIALAGITLPFL-FGAGVSLF-LQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQ 187 (782)
Q Consensus 110 d~~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~-l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~ 187 (782)
.-+.+..|...++..+..|.+.-.+ +|..++.. ....+ ....+. .-.++.|...|..+|..+..+.+|.. .|.-
T Consensus 118 p~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf--~~~~gl-ld~LlFgSLIsAVDPVAVLaVFEEih-VNe~ 193 (670)
T KOG1966|consen 118 PNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLF--GMSIGL-LDILLFGSLISAVDPVAVLAVFEEIH-VNEV 193 (670)
T ss_pred ccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCchH-HHHHHHHHHHHhcCchhhhhhhhhhc-cccE
Confidence 9999999999999999999887433 33322211 11112 111222 34578899999999999999999999 7888
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 003979 188 VGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVD 267 (782)
Q Consensus 188 ~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 267 (782)
+--++.+++++||.+.++++-+..++..-++..-.. .+.......+....+.+++++.+...+.....|.+ .+- +
T Consensus 194 LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~-~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft--~~v--r 268 (670)
T KOG1966|consen 194 LFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTT-IDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFT--KHV--R 268 (670)
T ss_pred EEeeeehhhhhcCceEEehHHHHHHHHHhcccceeE-eeeecceeEEEEEecCchhHHHHHHHHHHHHHHhh--cce--e
Confidence 889999999999999999999888876642110000 00011111111111222233333444444444544 222 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCC-----CchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccc
Q 003979 268 DVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKG-----GEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKI 342 (782)
Q Consensus 268 e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~-----~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l 342 (782)
-..-.+++.+...+|..+|.+++|++++-.++|+++..+ ......-.+..-...+..--++-|++.|.++=-.
T Consensus 269 viePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~-- 346 (670)
T KOG1966|consen 269 VLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS-- 346 (670)
T ss_pred eecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--
Confidence 223467888899999999999999999999999999743 2222222333333345566677888889887433
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHHhhcccceeec---cC-----------hhh
Q 003979 343 RGIEAWGLLVLVISMACAGKILGTFVMALLC------MIPVRESLALGVLMNTKGLVELIV---LN-----------DEM 402 (782)
Q Consensus 343 ~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~------~~~~~~~~~lgl~m~~kG~~~lvl---i~-----------~~~ 402 (782)
.+..+|..+++-++..++.|.+++...+++. +++..|.+.++. =+-||.+++.+ ++ ...
T Consensus 347 ~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsy-GGLRGAiaF~LV~lid~~~vp~K~~Fvttt 425 (670)
T KOG1966|consen 347 NHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSY-GGLRGAIAFGLVVLIDGAKVPAKNMFVTTT 425 (670)
T ss_pred cceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeec-CCcchhhheeEEEEeccccCCcccceEeee
Confidence 2212566667777777888999988888776 467778877776 45688887766 33 122
Q ss_pred HHHHHHHHHHHHHhhhhhhcc
Q 003979 403 FAILVLMALFTTFMTTPMRQL 423 (782)
Q Consensus 403 ~~~lv~~~~v~t~i~~pl~~~ 423 (782)
..++.+++.+..+..-|+++|
T Consensus 426 i~VIfFTVflQGiTIkplvk~ 446 (670)
T KOG1966|consen 426 IAVIFFTVFLQGITIKPLVKF 446 (670)
T ss_pred eEEEeeeeeecccchHHHHHH
Confidence 333445555666777899999
No 38
>PRK10116 universal stress protein UspC; Provisional
Probab=99.18 E-value=1.7e-10 Score=109.45 Aligned_cols=135 Identities=11% Similarity=0.106 Sum_probs=89.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEA 512 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 512 (782)
-|||+++|++++...++..+..++. +.+..++++|+++.+...... ......+ .. ....++..+.+++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~--~~~~~~~----~~----~~~~~~~~~~l~~ 71 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIAR--PVNGKISLITLASDPEMYNQF--AAPMLED----LR----SVMQEETQSFLDK 71 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHH--HhCCEEEEEEEccCcccchhh--hHHHHHH----HH----HHHHHHHHHHHHH
Confidence 4799999999999999988888873 356789999998653211111 0000000 00 0112233344454
Q ss_pred HhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEe
Q 003979 513 YKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLV 591 (782)
Q Consensus 513 ~~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v 591 (782)
+.+..++....... ..++..+.|++.|++.++||||||.|++++.. + +.++.++|++++||||+++.
T Consensus 72 ~~~~~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~--------~--~~s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 72 LIQDADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFS--------R--ASCSAKRVIASSEVDVLLVP 138 (142)
T ss_pred HHHhcCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHH--------H--HHHHHHHHHhcCCCCEEEEe
Confidence 44434443322222 34788999999999999999999999886544 2 23789999999999999974
No 39
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.14 E-value=1.7e-10 Score=107.92 Aligned_cols=132 Identities=16% Similarity=0.221 Sum_probs=90.2
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHH--
Q 003979 434 RIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFE-- 511 (782)
Q Consensus 434 rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-- 511 (782)
|||+|+|++++...+++.+..++. .....++++|+++................ ...+.......
T Consensus 4 ~Ilv~~d~~~~~~~al~~a~~la~--~~~~~i~~l~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 69 (140)
T PF00582_consen 4 RILVAIDGSEESRRALRFALELAK--RSGAEITLLHVIPPPPQYSFSAAEDEESE------------EEAEEEEQARQAE 69 (140)
T ss_dssp EEEEEESSSHHHHHHHHHHHHHHH--HHTCEEEEEEEEESCHCHHHHHHHHHHHH------------HHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHH--hhCCeEEEEEeeccccccccccccccccc------------cccchhhhhhhHH
Confidence 799999999999999998888773 36789999999987654443211111000 00011110000
Q ss_pred -HH-hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEE
Q 003979 512 -AY-KQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAV 589 (782)
Q Consensus 512 -~~-~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i 589 (782)
.. ............. . ++..++|++.+++.++|+||||.|++.+.. +..+|++.+++++++||||+|
T Consensus 70 ~~~~~~~~~~~~~~~~~-~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~--------~~~~gs~~~~l~~~~~~pVlv 138 (140)
T PF00582_consen 70 AEEAEAEGGIVIEVVIE-S--GDVADAIIEFAEEHNADLIVMGSRGRSGLE--------RLLFGSVAEKLLRHAPCPVLV 138 (140)
T ss_dssp HHHHHHHTTSEEEEEEE-E--SSHHHHHHHHHHHTTCSEEEEESSSTTSTT--------TSSSHHHHHHHHHHTSSEEEE
T ss_pred HHHHhhhccceeEEEEE-e--eccchhhhhccccccceeEEEeccCCCCcc--------CCCcCCHHHHHHHcCCCCEEE
Confidence 11 1112233333332 2 589999999999999999999999976666 458999999999999999998
Q ss_pred E
Q 003979 590 L 590 (782)
Q Consensus 590 ~ 590 (782)
+
T Consensus 139 v 139 (140)
T PF00582_consen 139 V 139 (140)
T ss_dssp E
T ss_pred e
Confidence 6
No 40
>PRK11175 universal stress protein UspE; Provisional
Probab=99.14 E-value=1.3e-10 Score=125.18 Aligned_cols=143 Identities=16% Similarity=0.108 Sum_probs=95.0
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
.++||++|+||+++++.|+++|.++|+..++++++++++++........ ........ ..+...+..++.+++.
T Consensus 2 ~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~l~~~ 74 (305)
T PRK11175 2 KYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMTTL------LSPDEREA-MRQGVISQRTAWIREQ 74 (305)
T ss_pred CcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhhcc------cchhHHHH-HHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999985422110000 00000000 0000011123344444
Q ss_pred HHh-cCCcEEEEEEEe--cChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccE
Q 003979 690 MRK-WGGSVEYEEKVM--ANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASV 766 (782)
Q Consensus 690 ~~~-~~~~v~~~e~~v--~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sV 766 (782)
... ....+....... +++.+.+...++..++||||||+|| .+++.+ ..+|++++.++++ ++|||
T Consensus 75 ~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~-----~~~~~~-----~~~gs~~~~l~~~---~~~pv 141 (305)
T PRK11175 75 AKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQ-----HDKLES-----VIFTPTDWHLLRK---CPCPV 141 (305)
T ss_pred HHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCC-----CcHHHh-----hccChhHHHHHhc---CCCCE
Confidence 433 222333333322 4466666666665669999999999 888888 5999999999999 99999
Q ss_pred EEEeec
Q 003979 767 LVIQQH 772 (782)
Q Consensus 767 Lvvqq~ 772 (782)
|+|+..
T Consensus 142 lvv~~~ 147 (305)
T PRK11175 142 LMVKDQ 147 (305)
T ss_pred EEeccc
Confidence 999975
No 41
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.91 E-value=9.9e-09 Score=94.68 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=89.5
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHHHHh
Q 003979 613 RVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDFMRK 692 (782)
Q Consensus 613 ~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 692 (782)
||++|+++++.++.++++|.++|+..+++++++++.++...... . ..+...+..++.++++...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~---------------~-~~~~~~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA---------------E-LAELLEEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch---------------h-HHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999875432100 0 0011334445666666654
Q ss_pred -cCCcEEEEEEE-ecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEE
Q 003979 693 -WGGSVEYEEKV-MANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVI 769 (782)
Q Consensus 693 -~~~~v~~~e~~-v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLvv 769 (782)
....+...... ..+..+.+....+..++|++|+|+++ +.++.+ ...|++++.+++. +++|||+|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~-----~~~~~~-----~~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 65 LAEAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRG-----RSGLRR-----LLLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred HhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCC-----CCccce-----eeeccHHHHHHhC---CCCCEEeC
Confidence 12223222222 23334555555555559999999998 766666 4889999999999 99999985
No 42
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.88 E-value=6.9e-08 Score=105.01 Aligned_cols=257 Identities=23% Similarity=0.301 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHH
Q 003979 88 PILESLASVGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIF 161 (782)
Q Consensus 88 ~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 161 (782)
...+-+.+.-+.++.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=+ .+....+...+|..
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~----~~n~~~~~~~GWgI------ 136 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYF----FLNADTPSQHGFGI------ 136 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHh----heecCCCccCcccc------
Confidence 4455566777888999999999877764 233333 3345667777754322 22111111223332
Q ss_pred HHHHHhhccHHHHHHHHHHcc-ccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 003979 162 MGVSLSITAFPVLARILADLK-LLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAF 240 (782)
Q Consensus 162 l~~~~s~Ts~~vv~~il~el~-l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
-++ |+.+-...++.=+| ..++.+...+++-+++||+.++++.+++.+ ++. ...+......++
T Consensus 137 ---PmA-TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----------~~i---~~~~L~~a~~~~ 199 (438)
T PRK14856 137 ---PMA-TDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----------TNL---KFAWLLGALGVV 199 (438)
T ss_pred ---ccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----------CCC---cHHHHHHHHHHH
Confidence 222 23222222222222 257788899999999999999998876542 112 223333332222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCch-----------
Q 003979 241 VAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEF----------- 309 (782)
Q Consensus 241 ~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~----------- 309 (782)
. +. ++.+|. . ++....++.+. +...+....-|+|+.++..++|+++|..++.
T Consensus 200 ~-~l---------~~ln~~-~----v~~~~~Y~~~G--~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~ 262 (438)
T PRK14856 200 L-VL---------AVLNRL-N----VRSLIPYLLLG--VLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELG 262 (438)
T ss_pred H-HH---------HHHHHc-C----CccccHHHHHH--HHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhh
Confidence 1 11 222333 1 12222333333 3344456778999999999999999853211
Q ss_pred ---------------------------------HHHHHHHHHHHHHhhhHHHH-HHHhhcccccccccchhhHHHHHHHH
Q 003979 310 ---------------------------------AVRLMKKIQDFVSGLLLPLY-FASSGLKTDVAKIRGIEAWGLLVLVI 355 (782)
Q Consensus 310 ---------------------------------~~~l~~~l~~~~~~~f~plf-F~~~G~~id~~~l~~~~~~~~~~~~v 355 (782)
.+++++.+.+.+..+.+|+| |.-.|..++...... .-.....++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~--~~pv~lGI~ 340 (438)
T PRK14856 263 KRYAETSSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE--VDKVLLGVI 340 (438)
T ss_pred hhhhccccccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc--cCcHHHHHH
Confidence 24566778888888999999 888999987542221 112344556
Q ss_pred HHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhcc
Q 003979 356 SMACAGKILGTFVMALLC----------MIPVRESLALGVLMNTKG 391 (782)
Q Consensus 356 ~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG 391 (782)
+..++||.+|.+..++.. +++|++-.-.|+ ++..|
T Consensus 341 ~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIG 385 (438)
T PRK14856 341 LGLCLGKPLGIFLITFISEKLKITARPKGISWWHILGAGL-LAGIG 385 (438)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHH
Confidence 677888988887776654 467787776666 44444
No 43
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.87 E-value=1.6e-08 Score=96.73 Aligned_cols=145 Identities=20% Similarity=0.217 Sum_probs=97.3
Q ss_pred ccceEEEecc-CCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHH
Q 003979 610 VLKRVCIIFF-GGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDD 688 (782)
Q Consensus 610 ~~~~Ilv~~~-g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 688 (782)
..++|++++| |++..+.|++.+..+++..+..++++++.+......... .... ...........++..++.+++
T Consensus 4 ~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (154)
T COG0589 4 MYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVS----VALA-DAPIPLSEEELEEEAEELLAE 78 (154)
T ss_pred ccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccc----cccc-cchhhhhHHHHHHHHHHHHHH
Confidence 4689999999 999999999999999999999999999887543211100 0000 000000001123334455555
Q ss_pred HHHh-cCCcEE--EEEEEecCh-HHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcc
Q 003979 689 FMRK-WGGSVE--YEEKVMANV-KDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFA 764 (782)
Q Consensus 689 ~~~~-~~~~v~--~~e~~v~~g-~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~ 764 (782)
.+.. ....+. ..+....++ .+.+...++..++||||||++| ++++++ ..||++++.++++ ++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g-----~~~l~~-----~llGsvs~~v~~~---~~~ 145 (154)
T COG0589 79 AKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRG-----RSGLSR-----LLLGSVAEKVLRH---APC 145 (154)
T ss_pred HHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCC-----Cccccc-----eeeehhHHHHHhc---CCC
Confidence 5543 111211 223333445 4666666666569999999999 888888 7999999999999 999
Q ss_pred cEEEEeec
Q 003979 765 SVLVIQQH 772 (782)
Q Consensus 765 sVLvvqq~ 772 (782)
|||+|+..
T Consensus 146 pVlvv~~~ 153 (154)
T COG0589 146 PVLVVRSE 153 (154)
T ss_pred CEEEEccC
Confidence 99999864
No 44
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.86 E-value=2.4e-08 Score=92.11 Aligned_cols=127 Identities=20% Similarity=0.262 Sum_probs=90.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHHH
Q 003979 434 RIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAY 513 (782)
Q Consensus 434 rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 513 (782)
+||+|+++++....+++.+..++.. .+..++++|+.+......... .. ....+..+.++++
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~--~~~~i~~l~v~~~~~~~~~~~-~~----------------~~~~~~~~~l~~~ 61 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR--LGAELVLLHVVDPPPSSAAEL-AE----------------LLEEEARALLEAL 61 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCCCCcchhH-HH----------------HHHHHHHHHHHHH
Confidence 6899999999999999999888743 578899999986544332100 00 0112222333333
Q ss_pred hh---ccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEE
Q 003979 514 KQ---LRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVL 590 (782)
Q Consensus 514 ~~---~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~ 590 (782)
.. ..+++++.....+ +..++|++.+++.++|++|||++++.... +..+++..++++++++|||+++
T Consensus 62 ~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~--------~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 62 REALAEAGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLR--------RLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HHHHhcCCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCccc--------eeeeccHHHHHHhCCCCCEEeC
Confidence 32 3456666665443 44899999999999999999998876544 3478889999999999999873
No 45
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.78 E-value=2.4e-07 Score=99.38 Aligned_cols=258 Identities=19% Similarity=0.245 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCchhHHHH
Q 003979 88 PILESLASVGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLFGAGVSLFLQKAVHG-ENKVGYGQFII 160 (782)
Q Consensus 88 ~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~l 160 (782)
...+-+.+.=+.++.|.+|+|+..+.+. ++.|++ +.-++.|+++|.++=+. +....+. ..+|..
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~----~n~g~~~~~~GWgI----- 128 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAA----FNYNNPETLRGWAI----- 128 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhe----eecCCCcccCcccc-----
Confidence 3445566666788999999999887764 233333 33456677777543222 2111100 123433
Q ss_pred HHHHHHhhccHHHHHHHHHHc-cccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHH
Q 003979 161 FMGVSLSITAFPVLARILADL-KLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVA 239 (782)
Q Consensus 161 ~l~~~~s~Ts~~vv~~il~el-~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (782)
-++ |+.+-...++.=+ +..+..+...+++-+++||+.++++.++..+ ++.+ ..+......+
T Consensus 129 ----PmA-TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----------~~i~---~~~L~~a~~~ 190 (389)
T PRK09560 129 ----PAA-TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT----------SDLS---LPALALAAIA 190 (389)
T ss_pred ----ccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----------CCCC---HHHHHHHHHH
Confidence 121 2222222222222 2267788899999999999999998876542 1122 2233232221
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCc------hHHHH
Q 003979 240 FVAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGE------FAVRL 313 (782)
Q Consensus 240 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~------~~~~l 313 (782)
+. +. ++.+|. . .+....+..+. +...+....-|+|+.++..++|+++|...+ -.+++
T Consensus 191 ~~-~l---------~~ln~~-~----v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rl 253 (389)
T PRK09560 191 IA-VL---------FLLNRL-G----VTKLTPYLIVG--AILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHL 253 (389)
T ss_pred HH-HH---------HHHHHc-C----CccchHHHHHH--HHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHH
Confidence 11 11 122333 1 12222333333 334455677899999999999999996321 13678
Q ss_pred HHHHHHHHHhhhHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHH
Q 003979 314 MKKIQDFVSGLLLPLY-FASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLC----------MIPVRESLA 382 (782)
Q Consensus 314 ~~~l~~~~~~~f~plf-F~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~----------~~~~~~~~~ 382 (782)
++++++.+..+.+|+| |...|..++-..+.. ..-.....+++..++||.+|.+..++.. +.+|++-..
T Consensus 254 eh~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~g 332 (389)
T PRK09560 254 EHALHPWVAFAILPLFAFANAGVSLAGISLSS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYG 332 (389)
T ss_pred HHHhhhhhhhhhHHHHHhhcCCeeecCCcHHh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 8999999888889999 788888884322221 1112344566677888988887776654 467777766
Q ss_pred HHHHHhhcc
Q 003979 383 LGVLMNTKG 391 (782)
Q Consensus 383 lgl~m~~kG 391 (782)
.|+ ++..|
T Consensus 333 v~~-L~GIG 340 (389)
T PRK09560 333 VSV-LCGIG 340 (389)
T ss_pred HHH-HHHHH
Confidence 666 43333
No 46
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.75 E-value=4.3e-07 Score=96.88 Aligned_cols=260 Identities=17% Similarity=0.237 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHH
Q 003979 88 PILESLASVGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIF 161 (782)
Q Consensus 88 ~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 161 (782)
...+-+.+.=+.++.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=..+.. ......+|.. +.+-=
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~----~~~~~~GW~I-P~ATD 129 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH----DIKVINGWAI-PSATD 129 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc----CCcccCcccc-ccHHH
Confidence 3345556666778999999999877763 233333 33456777777644332211 1100234433 11111
Q ss_pred HHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHH
Q 003979 162 MGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFV 241 (782)
Q Consensus 162 l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (782)
++|++-.-.+-..+ .+..+.-.+++-+++||+.++++.+++.+ ++.+ ..+.......+
T Consensus 130 -------IAFAlgvLallG~r-vP~~lrvFLlaLAIvDDlgAI~VIAlFYt----------~~i~---~~~L~~A~~~~- 187 (383)
T PRK14854 130 -------IAFTLGILALLGTR-VPAKLKLLVITIAIFDDIAAIAIIAIFYT----------KSLS---LLSLSLGTLFI- 187 (383)
T ss_pred -------HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeecC----------CCcc---HHHHHHHHHHH-
Confidence 22322222222223 67788889999999999999988776542 1122 22222221111
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCC----chHHHHHHHH
Q 003979 242 AFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGG----EFAVRLMKKI 317 (782)
Q Consensus 242 ~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~----~~~~~l~~~l 317 (782)
...++ +.|+. + .+....++.+. +...+....-|+|+.++..+.|+++|... .-.+++++++
T Consensus 188 -~~l~~-------~nr~~---~--v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L 252 (383)
T PRK14854 188 -LAMII-------CNRIF---K--INRSSVYVVLG--FFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSL 252 (383)
T ss_pred -HHHHH-------HHHhc---C--CceehHHHHHH--HHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHh
Confidence 11111 12221 0 12222333333 33445567789999999999999999631 1136788899
Q ss_pred HHHHHhhhHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHH
Q 003979 318 QDFVSGLLLPLY-FASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLC----------MIPVRESLALGVL 386 (782)
Q Consensus 318 ~~~~~~~f~plf-F~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~ 386 (782)
++.+..+.+|+| |+-.|..++-..+.. ..-.....+++..++||.+|.+..++.. +.+|++-...|+
T Consensus 253 ~p~v~~~IlPlFA~aNAGV~l~~~~~~~-~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~- 330 (383)
T PRK14854 253 HPWIIYFILPVFAFANAGISFSGISFSI-LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL- 330 (383)
T ss_pred hchHHHhhHHHHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-
Confidence 999999999999 788888884222211 1112344556677888988887776654 467888777776
Q ss_pred Hhhcc
Q 003979 387 MNTKG 391 (782)
Q Consensus 387 m~~kG 391 (782)
++..|
T Consensus 331 L~GIG 335 (383)
T PRK14854 331 LCGIG 335 (383)
T ss_pred HHHHH
Confidence 44444
No 47
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.74 E-value=8.3e-07 Score=95.06 Aligned_cols=257 Identities=23% Similarity=0.294 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCchhHHHHH
Q 003979 89 ILESLASVGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLFGAGVSLFLQKAVHG-ENKVGYGQFIIF 161 (782)
Q Consensus 89 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~l~ 161 (782)
..+-+.+.=+.++.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=+ .+....+. ..+|.. +
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~----~~n~~~~~~~~GWaI-P---- 129 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYL----LFNYADPVTREGWAI-P---- 129 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHh----heecCCCcccCcccc-c----
Confidence 445566666778999999999988774 233333 3345667777754322 22111110 224433 1
Q ss_pred HHHHHhhccHHHHHHHHHHc-cccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 003979 162 MGVSLSITAFPVLARILADL-KLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAF 240 (782)
Q Consensus 162 l~~~~s~Ts~~vv~~il~el-~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
++ |+.+-...++.=+ +..+..+...+++-+++||+.++++.+++.+ ++-+ ..+.......+
T Consensus 130 ----~A-TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----------~~i~---~~~L~~a~~~~ 191 (388)
T PRK09561 130 ----AA-TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT----------SDLS---MVSLGVAAVAI 191 (388)
T ss_pred ----cH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----------CCcc---HHHHHHHHHHH
Confidence 11 2222222222222 2267788899999999999999998876542 1122 22222222111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCc----hHHHHHHH
Q 003979 241 VAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGE----FAVRLMKK 316 (782)
Q Consensus 241 ~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~----~~~~l~~~ 316 (782)
... ++.+|. . .+....++.+.. ...+.....|+|+.++..+.|+++|...+ -.++++++
T Consensus 192 --~~l--------~~ln~~-~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~ 254 (388)
T PRK09561 192 --AVL--------AVLNLC-G----VRRTSVYILVGV--VLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHG 254 (388)
T ss_pred --HHH--------HHHHHc-C----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHH
Confidence 111 122333 1 122223333333 34445677899999999999999996322 14678899
Q ss_pred HHHHHHhhhHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHH
Q 003979 317 IQDFVSGLLLPLY-FASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLC----------MIPVRESLALGV 385 (782)
Q Consensus 317 l~~~~~~~f~plf-F~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl 385 (782)
+++.+..+.+|+| |+-.|..++-..+.. ..-.....+.+..++||.+|.+..++.. +.+|++-..+|+
T Consensus 255 L~p~v~~~IlPlFAfaNAGV~l~~~~~~~-~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~ 333 (388)
T PRK09561 255 LHPWVAFLILPLFAFANAGVSLQGVTLDG-LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV 333 (388)
T ss_pred hhhhhhheeHHHHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 9999999999999 788888883212211 1112344556677888988887776654 467887776666
Q ss_pred HHhhcc
Q 003979 386 LMNTKG 391 (782)
Q Consensus 386 ~m~~kG 391 (782)
++..|
T Consensus 334 -L~GIG 338 (388)
T PRK09561 334 -LCGIG 338 (388)
T ss_pred -HHHHH
Confidence 44444
No 48
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.71 E-value=1e-06 Score=95.68 Aligned_cols=254 Identities=20% Similarity=0.254 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHH
Q 003979 88 PILESLASVGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIF 161 (782)
Q Consensus 88 ~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 161 (782)
...+-+.+.-+.++.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=. .+....+...+|..
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~----~~n~~~~~~~GWgI------ 131 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYT----ALNAGGPGASGWGV------ 131 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHh----eeecCCCccCcccc------
Confidence 3445566666788999999999887764 233333 3345666777754322 22111111223332
Q ss_pred HHHHHhhccHHHHHHHHHHcc-ccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 003979 162 MGVSLSITAFPVLARILADLK-LLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAF 240 (782)
Q Consensus 162 l~~~~s~Ts~~vv~~il~el~-l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
-++ |+.+-...++.=+| ..+..+...+++-+++||+.++++.+++.+ ++.+ ..+..+...++
T Consensus 132 ---PmA-TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----------~~i~---~~~L~~a~~~~ 194 (423)
T PRK14855 132 ---PMA-TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT----------SGLN---LLALLLAALTW 194 (423)
T ss_pred ---ccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC----------CCCC---HHHHHHHHHHH
Confidence 222 33222233322232 256678889999999999999988776542 1122 22332222211
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCC-Cch----------
Q 003979 241 VAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKG-GEF---------- 309 (782)
Q Consensus 241 ~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~-~~~---------- 309 (782)
. +. ++.+|. . ++....++.+. +...+....-|+|+.++..+.|+++|.. .+.
T Consensus 195 ~-~l---------~~ln~~-~----v~~~~~Y~~~G--~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~ 257 (423)
T PRK14855 195 A-LA---------LLAGRL-G----VTSLKIYAVLG--ALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDA 257 (423)
T ss_pred H-HH---------HHHHHc-C----CccccHHHHHH--HHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHH
Confidence 1 11 122333 1 12222333333 2344556778999999999999999863 111
Q ss_pred --------------------------HHHHHHHHHHHHHhhhHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHH
Q 003979 310 --------------------------AVRLMKKIQDFVSGLLLPLY-FASSGLKTDVAKIRGIEAWGLLVLVISMACAGK 362 (782)
Q Consensus 310 --------------------------~~~l~~~l~~~~~~~f~plf-F~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K 362 (782)
.+++++.+++.+..+.+|+| |+-.|..++-.. ... ....+++..++||
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~p----v~lGI~~GLvvGK 332 (423)
T PRK14855 258 AAPGRPEVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LGT----VSLGVFLGLLLGK 332 (423)
T ss_pred hhcccchhhhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CCc----HHHHHHHHHHhcc
Confidence 24577788888888999999 788888884333 222 2344566677889
Q ss_pred HHHHHHHHHHh----------CCChHHHHHHHHHHhhcc
Q 003979 363 ILGTFVMALLC----------MIPVRESLALGVLMNTKG 391 (782)
Q Consensus 363 ~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG 391 (782)
.+|.+..++.. +++|++-...|+ ++..|
T Consensus 333 ~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIG 370 (423)
T PRK14855 333 PLGVVGGAWLAVRLGLASLPRRVNWLHMLGAGL-LAGIG 370 (423)
T ss_pred hHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHH
Confidence 88887776654 467888766666 44444
No 49
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.66 E-value=2e-07 Score=88.95 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=89.5
Q ss_pred cceEEEEec-CCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHH
Q 003979 432 EFRIQACVH-GPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSF 510 (782)
Q Consensus 432 e~rILvpv~-~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 510 (782)
..+|++++| +++....+...+...+.. ....++++++++.............. ......... .....++..+..
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~ 79 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKR--LGAPLILLVVIDPLEPTALVSVALAD--APIPLSEEE-LEEEAEELLAEA 79 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHh--cCCeEEEEEEeccccccccccccccc--chhhhhHHH-HHHHHHHHHHHH
Confidence 357999999 999999988888776633 45566677777654432221100000 000000000 001123333333
Q ss_pred HHHhhccceE-EEEeEEecCCCch-HHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceE
Q 003979 511 EAYKQLRRVT-IRHSTAISALSTM-HEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVA 588 (782)
Q Consensus 511 ~~~~~~~~v~-v~~~~~v~~~~~~-~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~ 588 (782)
++..+..++. +...... ++. .+.|++.|.+.++|+||||.+++++.+ +..+||+.++|++++||||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~---g~~~~~~i~~~a~~~~adliV~G~~g~~~l~--------~~llGsvs~~v~~~~~~pVl 148 (154)
T COG0589 80 KALAEAAGVPVVETEVVE---GSPSAEEILELAEEEDADLIVVGSRGRSGLS--------RLLLGSVAEKVLRHAPCPVL 148 (154)
T ss_pred HHHHHHcCCCeeEEEEec---CCCcHHHHHHHHHHhCCCEEEECCCCCcccc--------ceeeehhHHHHHhcCCCCEE
Confidence 3333333333 2344333 355 699999999999999999999888776 44899999999999999999
Q ss_pred EEe
Q 003979 589 VLV 591 (782)
Q Consensus 589 i~v 591 (782)
++.
T Consensus 149 vv~ 151 (154)
T COG0589 149 VVR 151 (154)
T ss_pred EEc
Confidence 973
No 50
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=98.65 E-value=1.6e-07 Score=101.78 Aligned_cols=123 Identities=14% Similarity=0.077 Sum_probs=80.2
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCC--CeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENP--GGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVD 687 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~--~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 687 (782)
.++|||+|+|||+.+++|+++|.++|+.. ++++|++||++...... ..+. ..+..++.++
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~-------------~~~~-----~~~~~eelle 65 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP-------------EGQD-----ELAAAEELLE 65 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc-------------chhH-----HHHHHHHHHH
Confidence 57899999999999999999999999884 69999999998533211 0000 1122333333
Q ss_pred HHHHh-------cCCcEEEEEEEe---------cChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccc
Q 003979 688 DFMRK-------WGGSVEYEEKVM---------ANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLI 751 (782)
Q Consensus 688 ~~~~~-------~~~~v~~~e~~v---------~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~v 751 (782)
+.++. ....+.+....+ +++.+++...++..++||||||..- .-|=+- |.|-++
T Consensus 66 ~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~-----~~~~~~-----~~~~~~ 135 (357)
T PRK12652 66 RVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY-----NPGGTA-----PMLQPL 135 (357)
T ss_pred HHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC-----CCCCCC-----cccchH
Confidence 33332 113454444443 4678888888887779999999986 333333 455555
Q ss_pred hhhhhcCCC
Q 003979 752 GNILASSDH 760 (782)
Q Consensus 752 gd~l~s~d~ 760 (782)
.-.|++.+.
T Consensus 136 ~~~~~~~~~ 144 (357)
T PRK12652 136 ERELARAGI 144 (357)
T ss_pred HHHHHhcCC
Confidence 555555543
No 51
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.64 E-value=6.4e-08 Score=103.51 Aligned_cols=254 Identities=20% Similarity=0.312 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHH
Q 003979 88 PILESLASVGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIF 161 (782)
Q Consensus 88 ~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 161 (782)
...+-+.+.=+.++.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=. .+.... + ...--
T Consensus 54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl----~~n~~~---~-----~~~~G 121 (378)
T PF06965_consen 54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYL----AFNAGG---P-----EAAHG 121 (378)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GG--SS---T-----THHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHh----eeecCC---C-----CcCce
Confidence 4455666777788999999999887763 333433 2334566666643211 121111 0 01122
Q ss_pred HHHHHhhccHHHHHHHHHHcc-ccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 003979 162 MGVSLSITAFPVLARILADLK-LLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAF 240 (782)
Q Consensus 162 l~~~~s~Ts~~vv~~il~el~-l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
+|+-+ .|+.+-...++.=+| ..+..+...+++-+++||+.++++.+++.+ ++ ....+......++
T Consensus 122 W~IP~-ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----------~~---i~~~~L~~a~~~~ 187 (378)
T PF06965_consen 122 WAIPM-ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----------DG---ISLLWLLLAAAAL 187 (378)
T ss_dssp TSSSS----HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS------------------HHHHHHHHHHH
T ss_pred EEecc-cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----------CC---CCHHHHHHHHHHH
Confidence 22222 233333333333332 256788899999999999999998886552 11 1222222222111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCch--------HHH
Q 003979 241 VAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEF--------AVR 312 (782)
Q Consensus 241 ~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~--------~~~ 312 (782)
.+. |..+|. .- +....+..+. +...+.....|+|+.++..+.|+++|..++. .++
T Consensus 188 -~~l---------~~l~r~-~v----~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~r 250 (378)
T PF06965_consen 188 -LLL---------FVLNRL-GV----RSLWPYLLLG--ILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLER 250 (378)
T ss_dssp -HHH---------HHHHHT-T-------THHHHHHH--HHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHH
T ss_pred -HHH---------HHHHHC-CC----ceehHHHHHH--HHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHH
Confidence 111 222333 11 2222333332 2344556778999999999999999975443 257
Q ss_pred HHHHHHHHHHhhhHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHH
Q 003979 313 LMKKIQDFVSGLLLPLY-FASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLC----------MIPVRESL 381 (782)
Q Consensus 313 l~~~l~~~~~~~f~plf-F~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~----------~~~~~~~~ 381 (782)
+++.+++.++.+.+|+| |+..|..++-..+... .-.....+++..+++|.+|.+..++.. +++|++-.
T Consensus 251 le~~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~ 329 (378)
T PF06965_consen 251 LEHALHPWVAFVILPLFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLY 329 (378)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGT
T ss_pred HHHHhhhhhhhhhHHhHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHH
Confidence 88899999888999999 8889998886554321 222334456667889999877776554 34566555
Q ss_pred HHHH
Q 003979 382 ALGV 385 (782)
Q Consensus 382 ~lgl 385 (782)
..|+
T Consensus 330 gv~~ 333 (378)
T PF06965_consen 330 GVGL 333 (378)
T ss_dssp THHH
T ss_pred HHHH
Confidence 5554
No 52
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.46 E-value=1.3e-05 Score=82.58 Aligned_cols=245 Identities=21% Similarity=0.296 Sum_probs=143.1
Q ss_pred HHHHHHHHhhccCchhHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCchhHHHHHHHHHHhhcc
Q 003979 98 LLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLFGAGVSLFLQKAVH-GENKVGYGQFIIFMGVSLSITA 170 (782)
Q Consensus 98 l~~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~l~~~~s~Ts 170 (782)
..++.+.+|+|+..+.+. ++++++ ..-++.|++.|.++ +.++...-| ...+|.. +. .|+
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~~p~~~~GWaI-P~---------ATD 136 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAGDPATLEGWAI-PM---------ATD 136 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecCChhhhcCcCc-cc---------HHH
Confidence 456778899999988875 344443 23344556666432 222221111 1223332 11 233
Q ss_pred HHHHHHHHHHc-cccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 003979 171 FPVLARILADL-KLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVR 249 (782)
Q Consensus 171 ~~vv~~il~el-~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 249 (782)
.+-...++.=+ +..++.+.-.+++-+++||+-++++.++... ++-+ ..+...+.+++ ....
T Consensus 137 iAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----------~~Ls---~~al~~a~~~i--~vL~--- 198 (390)
T COG3004 137 IAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----------TDLS---MAALGIAALAI--AVLA--- 198 (390)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----------CCcc---HHHHHHHHHHH--HHHH---
Confidence 22223333322 3368888899999999999999988776552 1122 22222221111 1111
Q ss_pred HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCC----chHHHHHHHHHHHHHhhh
Q 003979 250 PIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGG----EFAVRLMKKIQDFVSGLL 325 (782)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~----~~~~~l~~~l~~~~~~~f 325 (782)
.+ +|. . ++....+++...++..+ -..-|+|..++..+.|+.+|-.. .--+++++.+.+.+..+.
T Consensus 199 -~l----N~~-~----v~~l~~Y~~~gviLW~~--vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~I 266 (390)
T COG3004 199 -VL----NRL-G----VRRLSPYLLVGVILWIA--VLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFI 266 (390)
T ss_pred -HH----HHh-C----chhhhHHHHHHHHHHHH--HHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHH
Confidence 12 222 1 11112334444443333 35679999999999999999432 234678888999989999
Q ss_pred HHHH-HHHhhcccc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhcc
Q 003979 326 LPLY-FASSGLKTD---VAKIRGIEAWGLLVLVISMACAGKILGTFVMALLC----------MIPVRESLALGVLMNTKG 391 (782)
Q Consensus 326 ~plf-F~~~G~~id---~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~m~~kG 391 (782)
+|+| |.-.|.+++ .+.+.+ ...+.+++..+++|.+|.+..|+.. +.+|++-...++ ++..|
T Consensus 267 lPlFaFaNAGvsl~g~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~i-LcGIG 341 (390)
T COG3004 267 LPLFAFANAGVSLQGVSLSGLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSI-LCGIG 341 (390)
T ss_pred HHHHHHccCCccccccccccccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHH-HHhhh
Confidence 9999 888898887 555544 2344566777899999888877664 467777666666 44444
No 53
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=98.04 E-value=4.9e-05 Score=82.55 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=80.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEA 512 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 512 (782)
.|||+|+|+|+++.++++-+..++.....+.+++++||++........ ... ....+++.+..++
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~---~~~-------------~~~~eelle~~~~ 69 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEG---QDE-------------LAAAEELLERVEV 69 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccch---hHH-------------HHHHHHHHHHHHH
Confidence 479999999999999998888777331136899999999743211110 000 0112233333332
Q ss_pred Hhh------ccceEEEEeEEec-----CCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhh
Q 003979 513 YKQ------LRRVTIRHSTAIS-----ALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQ 581 (782)
Q Consensus 513 ~~~------~~~v~v~~~~~v~-----~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~ 581 (782)
..+ ..++++++.+... ..+++++.|+++|++.++||||||-.-+.+.. ..+++.+- .=+.
T Consensus 70 ~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~--------~~~~~~~~-~~~~ 140 (357)
T PRK12652 70 WATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGT--------APMLQPLE-RELA 140 (357)
T ss_pred HHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCC--------CcccchHH-HHHH
Confidence 221 1467777666542 12689999999999999999999975553322 33555553 3345
Q ss_pred cCCCce
Q 003979 582 NAPCSV 587 (782)
Q Consensus 582 ~apc~V 587 (782)
++-|.+
T Consensus 141 ~~~~~~ 146 (357)
T PRK12652 141 RAGITY 146 (357)
T ss_pred hcCCce
Confidence 555543
No 54
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.82 E-value=0.03 Score=60.43 Aligned_cols=145 Identities=17% Similarity=0.164 Sum_probs=83.2
Q ss_pred hhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHH
Q 003979 48 IKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALA 127 (782)
Q Consensus 48 ~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~ 127 (782)
+++.+++.++--|+.|+++|+......++ ..-| ...-.-+.+-++|++ +.|.++++.++.+.+.+.+.+...
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~-Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~ 97 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EKKR-GVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTL 97 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hccc-hHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHH
Confidence 45678999999999999999854211111 0001 011133456667776 579999999999999988877666
Q ss_pred HHHHHHHHHHHHH-HHHHhhhccCCCCchhHHHHHHHHHHhhc---cHHHHHHHHHHccccCCchHHHHHHHHHHHhHHH
Q 003979 128 GITLPFLFGAGVS-LFLQKAVHGENKVGYGQFIIFMGVSLSIT---AFPVLARILADLKLLTTQVGQTAMAAAAFNDVVA 203 (782)
Q Consensus 128 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~l~l~~~~s~T---s~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~ 203 (782)
.+...+.++..++ ..++.+. ..+++++.-.|+. +..-+.+.+ | .+.+.-..+++...+-+.++
T Consensus 98 ~v~~~~~~~~~~g~k~l~l~~---------~~~~Lia~GtsICGaSAi~A~a~~i---~-A~~~~~a~ava~V~lfgt~a 164 (335)
T TIGR00698 98 ILTSTFFLTVFLGSSRLKLDK---------QMSILLGAGSSICGAAAVAAIEPVI---K-AEKEKVSVAIAIVVIFGTTG 164 (335)
T ss_pred HHHHHHHHHHHHHHHHhCCCh---------hHHHHHHcchhHHHHHHHHHhcccc---C-CCccceeeeehHHHHHHHHH
Confidence 6666666555444 3444322 3345555544432 222223332 2 23333445555555666666
Q ss_pred HHHHHHHHHH
Q 003979 204 WILLALAVSL 213 (782)
Q Consensus 204 i~ll~~~~~~ 213 (782)
.+++-.+..+
T Consensus 165 m~l~P~l~~~ 174 (335)
T TIGR00698 165 IFLYPSIYHY 174 (335)
T ss_pred HHHHHHHHHH
Confidence 6666555443
No 55
>PRK10490 sensor protein KdpD; Provisional
Probab=97.44 E-value=0.00082 Score=82.92 Aligned_cols=126 Identities=10% Similarity=0.072 Sum_probs=90.2
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
..+||+|+++|+|.++..++.|.|||+..+++++++||.++..... ... +++...+.++ +
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~--------------~~~-----~~~~l~~~~~-l 308 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRL--------------PEK-----KRRAILSALR-L 308 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcC--------------CHH-----HHHHHHHHHH-H
Confidence 4578999999999999999999999999999999999986533210 000 2222333332 4
Q ss_pred HHhcCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEE
Q 003979 690 MRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVI 769 (782)
Q Consensus 690 ~~~~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLvv 769 (782)
.++.+.. +.+..-.+.++++..+++..+++.||||+++ ++ . | ..-|++.|.|++.- .+..|.||
T Consensus 309 A~~lGa~--~~~~~~~dva~~i~~~A~~~~vt~IViG~s~-----~~---~-~---~~~~s~~~~l~r~~--~~idi~iv 372 (895)
T PRK10490 309 AQELGAE--TATLSDPAEEKAVLRYAREHNLGKIIIGRRA-----SR---R-W---WRRESFADRLARLG--PDLDLVIV 372 (895)
T ss_pred HHHcCCE--EEEEeCCCHHHHHHHHHHHhCCCEEEECCCC-----CC---C-C---ccCCCHHHHHHHhC--CCCCEEEE
Confidence 4443333 3444456777888888887779999999998 54 3 5 23589999999983 45788888
Q ss_pred ee
Q 003979 770 QQ 771 (782)
Q Consensus 770 qq 771 (782)
-.
T Consensus 373 ~~ 374 (895)
T PRK10490 373 AL 374 (895)
T ss_pred eC
Confidence 53
No 56
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.38 E-value=0.058 Score=57.68 Aligned_cols=144 Identities=20% Similarity=0.231 Sum_probs=85.8
Q ss_pred hccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchH-HHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHH
Q 003979 49 KPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTP-ILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALA 127 (782)
Q Consensus 49 ~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~-~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~ 127 (782)
+..+++.++--|+.|+++|+...+..+.+. + ... .-+.+-++|++ +.|.++++.++.+.+.+.+.....
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~~-----~-Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~ 91 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPARFK-----P-GIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIII 91 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcHHHH-----h-HHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHH
Confidence 446788999999999999973344322211 1 112 23466677776 579999999999999988888877
Q ss_pred HHHHHHHHHHHHH-HHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHH
Q 003979 128 GITLPFLFGAGVS-LFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWIL 206 (782)
Q Consensus 128 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~l 206 (782)
.+...+.++..++ ..++.+. ..+.+++.-.|+....-+..+-.-.| .+.+.-..+++...+=..+++++
T Consensus 92 ~v~~~~~~~~~lg~r~~~l~~---------~~~~Lia~GtsICG~SAi~A~a~~i~-a~~~~~a~ava~V~lfg~vam~~ 161 (305)
T PF03601_consen 92 VVILTFLLTYWLGRRLFGLDR---------KLAILIAAGTSICGASAIAATAPVIK-AKEEDVAYAVATVFLFGTVAMFL 161 (305)
T ss_pred HHHHHHHHHHHHHHHHhCCCH---------HHHHHHHhhcccchHHHHHHHccccc-CCCCceeeeehHHHHHHHHHHHH
Confidence 7777777776666 5554432 34566666555433222222211122 22333344455555555666666
Q ss_pred HHHHHH
Q 003979 207 LALAVS 212 (782)
Q Consensus 207 l~~~~~ 212 (782)
+-.+..
T Consensus 162 ~P~l~~ 167 (305)
T PF03601_consen 162 YPLLGH 167 (305)
T ss_pred HHHHHH
Confidence 554443
No 57
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.36 E-value=0.2 Score=55.32 Aligned_cols=82 Identities=26% Similarity=0.290 Sum_probs=56.8
Q ss_pred CCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHH
Q 003979 52 RQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITL 131 (782)
Q Consensus 52 ~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~ 131 (782)
.+|.++-.++.|+++.. +|.++ ++...+..+.+.+..+-+-+++.=++.|+++++|.+++.+..=+.+ .+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~-~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG-AV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH-HH
Confidence 47888888899999986 34431 1234466788888888888888888999999999988877544433 33
Q ss_pred HHHHHHHHHHHH
Q 003979 132 PFLFGAGVSLFL 143 (782)
Q Consensus 132 ~~~~~~~~~~~l 143 (782)
...+|..+++++
T Consensus 94 g~viG~~va~~l 105 (378)
T PF05684_consen 94 GTVIGAVVAFLL 105 (378)
T ss_pred HHHHHHHHHHHH
Confidence 444455555444
No 58
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.35 E-value=0.044 Score=59.01 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=64.6
Q ss_pred HHHHHHHHHhc-----chhhHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHH
Q 003979 279 MVSGFLTDLIG-----IHAIFGAFVFGLTIPKGGE---FAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGL 350 (782)
Q Consensus 279 l~~~~i~~~~g-----~~~~lgaf~aGl~~~~~~~---~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~ 350 (782)
.+.+++.++++ +...+++++.|+++.+.-+ ..+-..+.++.+ .++-+-+|..+.=|++.+..+.+ ...++
T Consensus 232 ~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~i-g~vsL~lflamALmSlkLweL~~-l~lpl 309 (404)
T COG0786 232 AVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVI-GNVSLSLFLAMALMSLKLWELAD-LALPL 309 (404)
T ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHh-ccccH
Confidence 34445666665 5678999999999986321 112122334444 67778888888889999888865 23344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 003979 351 LVLVISMACAGKILGTFVMALLCMIPVRESLA 382 (782)
Q Consensus 351 ~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~ 382 (782)
.+.+.+-..+.-+...++..+..|.++..+..
T Consensus 310 ~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 310 LVILAVQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 44444444555566667777888887766554
No 59
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.34 E-value=0.014 Score=61.54 Aligned_cols=242 Identities=14% Similarity=0.105 Sum_probs=140.0
Q ss_pred HHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHH
Q 003979 98 LLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARI 177 (782)
Q Consensus 98 l~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~i 177 (782)
+..++|-.|-++|++...+..||...+.+.-+++.++++.+++.+++..- .. ..+.+.+-.+++.+.-..=..+
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g--~~----Gls~laiiaa~~~~Ng~ly~al 124 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEG--IF----GLSGLAIVAAMSNSNGGLYAAL 124 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccc--cc----chHHHHHHHHHhcCcHHHHHHH
Confidence 56688999999999999998888888888888899999988888886431 11 2334555566666666666777
Q ss_pred HHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003979 178 LADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVAR 257 (782)
Q Consensus 178 l~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 257 (782)
..|.| -++|.|-..+ ..++|. +. +..+++. ..++ .
T Consensus 125 ~~~yG-~~~d~gA~~~--~sl~~G-------------------------Pf------~tm~aLg----------a~gL-A 159 (312)
T PRK12460 125 MGEFG-DERDVGAISI--LSLNDG-------------------------PF------FTMLALG----------AAGL-A 159 (312)
T ss_pred HHHcC-CHhhhhHHhh--hhhccC-------------------------cH------HHHHHHH----------HHHH-h
Confidence 77777 3444442211 111111 11 1111110 0011 1
Q ss_pred HhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhccc
Q 003979 258 QCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKT 337 (782)
Q Consensus 258 ~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~i 337 (782)
+. | .. .+ -+.+=+++.|+++.|-. +++.+.+++- ..+.+|+|-+..|+++
T Consensus 160 ~i-p---------~~-~l---------------v~lilpILiGmilGNld---~~~~~~l~~G-i~f~I~f~~f~LG~~l 209 (312)
T PRK12460 160 NI-P---------IM-AL---------------VAALLPLVLGMILGNLD---PDMRKFLTKG-GPLLIPFFAFALGAGI 209 (312)
T ss_pred cC-C---------hH-HH---------------HHHHHHHHHHHHHhccc---hhhHHHHhcc-ceEeHHHHHHHhcCCe
Confidence 11 1 00 00 00233456666776622 2334444443 4568999999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH--HHHhhcccceeec-cCh------hhHHHHHH
Q 003979 338 DVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALG--VLMNTKGLVELIV-LND------EMFAILVL 408 (782)
Q Consensus 338 d~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lg--l~m~~kG~~~lvl-i~~------~~~~~lv~ 408 (782)
|++++.+. -+. .+++.+..++.-...++...+++|.+.+-++.+| .+-+--|- +.+. .++ +.-+..|.
T Consensus 210 nl~~I~~~-G~~-GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgp-AAVaAadP~~~~~~~~Ataqva 286 (312)
T PRK12460 210 NLSMLLQA-GLA-GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATP-LAIAAADPSLAPVAAAATAQVA 286 (312)
T ss_pred eHHHHHHh-ChH-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHH-HHHHHhchhHHHHHHHHHHHHH
Confidence 99998762 222 2223333344445556666688898888877777 32222221 2222 221 33445567
Q ss_pred HHHHHHHhhhhhhcc
Q 003979 409 MALFTTFMTTPMRQL 423 (782)
Q Consensus 409 ~~~v~t~i~~pl~~~ 423 (782)
++++.|.+..|++..
T Consensus 287 a~vivTail~P~~t~ 301 (312)
T PRK12460 287 ASVIVTAILTPLLTS 301 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777788888888775
No 60
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.31 E-value=0.18 Score=55.50 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=57.7
Q ss_pred cchhhHHHHHHHHhcCCC------CchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHH
Q 003979 289 GIHAIFGAFVFGLTIPKG------GEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGK 362 (782)
Q Consensus 289 g~~~~lgaf~aGl~~~~~------~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K 362 (782)
.+...+++++.|+++.+. ....++..+++ .++.+-+|.+..=+++++..+.+ ...++.+.+++..++.-
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~~-~a~Plliil~~q~i~~~ 320 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLAD-YALPLLIILAVQTILMV 320 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 346779999999998752 11233334444 45555566667777888888876 23344443444444445
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHhh
Q 003979 363 ILGTFVMALLCMIPVRESLALGVLMNT 389 (782)
Q Consensus 363 ~i~~~l~~~~~~~~~~~~~~lgl~m~~ 389 (782)
+...++..+..|.++ |+..++.+.+.
T Consensus 321 ~f~~fv~fr~~gkdy-daavm~~G~~G 346 (368)
T PF03616_consen 321 LFAYFVTFRVMGKDY-DAAVMSAGFCG 346 (368)
T ss_pred HHHHHHhhhhhCCCh-hHHHHhhhhhc
Confidence 556666778888886 66666554443
No 61
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.03 E-value=0.23 Score=55.13 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=54.8
Q ss_pred cchhhHHHHHHHHhcCCCCchH--HHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHH-HHHHHH
Q 003979 289 GIHAIFGAFVFGLTIPKGGEFA--VRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMAC-AGKILG 365 (782)
Q Consensus 289 g~~~~lgaf~aGl~~~~~~~~~--~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~-~~K~i~ 365 (782)
.+....+|++.|+++.+.-+.. .++.++.-+...++.+-+|.+..=|++++..+.+ .+.-.+++++.-+ ..=+..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~--~a~Plliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELAD--LAGPIALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999997532111 1122222222356667777788888999988876 3333333333333 333344
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q 003979 366 TFVMALLCMIPVRESLALGV 385 (782)
Q Consensus 366 ~~l~~~~~~~~~~~~~~lgl 385 (782)
.++..+..|.+ -|+-.++.
T Consensus 322 ~fv~fr~mg~~-ydaaV~~a 340 (398)
T TIGR00210 322 IFVTFRLMGKD-YDAAVLCA 340 (398)
T ss_pred HHHhHHhccch-HHHHHHhc
Confidence 55666767766 66666444
No 62
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.96 E-value=0.47 Score=52.23 Aligned_cols=249 Identities=16% Similarity=0.197 Sum_probs=144.0
Q ss_pred hccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHH-----hhccHHHHHHHHHHc
Q 003979 107 LELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSL-----SITAFPVLARILADL 181 (782)
Q Consensus 107 le~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~-----s~Ts~~vv~~il~el 181 (782)
+.||.+.+.|...|-+...+.+.+..++++.+.+.++++++ ....+.++.-. ..-+.|...-.=+-+
T Consensus 109 Lgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~--------~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~ 180 (414)
T PF03390_consen 109 LGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSF--------KDAIFYIVLPIMGGGMGAGAVPLSQIYAEAL 180 (414)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHhhhcCCCccccHhHHHHHHHHHh
Confidence 58999999999999998888898888888888888887654 12223333322 112333322222224
Q ss_pred cccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCC-CCCc------c---c----chHHHHHHHHHHHHHHHHHHHH
Q 003979 182 KLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSG-AESH------H---Q----SSLISIWVLISGVAFVAFMLIV 247 (782)
Q Consensus 182 ~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~-~~~~------~---~----~~~~~~~~~~~~~~~~~~~~~v 247 (782)
+.-.++.-..++.+.++.++++++.-.+.-.+...... ++.+ + . +....-..-.....+....+|.
T Consensus 181 g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~ 260 (414)
T PF03390_consen 181 GQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYI 260 (414)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 44456666778888899999999887766655332110 0000 0 0 0000001112222333444555
Q ss_pred HHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHH
Q 003979 248 VRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLP 327 (782)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~p 327 (782)
...+...+. .. . .+...++..+ +...+|+ +| +.-++-.++...+...-+.+
T Consensus 261 ~G~ll~~~i-~i-------h-~~a~mIi~~~-----i~K~~~l------------vP---~~~e~~a~~~~~f~~~~lt~ 311 (414)
T PF03390_consen 261 LGVLLSKLI-GI-------H-AYAWMIILVA-----IVKAFGL------------VP---ESLEEGAKQWYKFFSKNLTW 311 (414)
T ss_pred HHHHHHHhc-CC-------c-HHHHHHHHHH-----HHHHhCc------------CC---HHHHHHHHHHHHHHHHHHHH
Confidence 554444443 11 1 1222222222 2222221 23 33344455566665666777
Q ss_pred HHHHHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHhhcccc
Q 003979 328 LYFASSGLK-TDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRES-LALGVLMNTKGLV 393 (782)
Q Consensus 328 lfF~~~G~~-id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~-~~lgl~m~~kG~~ 393 (782)
-..+.+|+. +|+..+.+..++.. +++++..+++-.+++++.+++.|+-.-|+ +..|+.|+.+|..
T Consensus 312 ~lLvgiGv~~~~l~~l~~a~t~~~-vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGt 378 (414)
T PF03390_consen 312 PLLVGIGVAYTDLNDLIAAFTPQY-VVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGT 378 (414)
T ss_pred HHHHHHHhhhCcHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCC
Confidence 777889998 99988877555554 44555667778889999999999766665 6677788777754
No 63
>PRK10490 sensor protein KdpD; Provisional
Probab=96.96 E-value=0.0054 Score=75.78 Aligned_cols=124 Identities=7% Similarity=0.070 Sum_probs=85.9
Q ss_pred ccceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHH
Q 003979 431 DEFRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSF 510 (782)
Q Consensus 431 ~e~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 510 (782)
...|||||++.+++++.+++-+..++.. .....+++||-....+..+ + .+.+++.+.+
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~--~~a~~~~l~V~~~~~~~~~----~----------------~~~~~l~~~~ 306 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAAR--LGSVWHAVYVETPRLHRLP----E----------------KKRRAILSAL 306 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHh--cCCCEEEEEEecCCcCcCC----H----------------HHHHHHHHHH
Confidence 4468999999999999999999888843 6778999998632111100 0 1234455555
Q ss_pred HHHhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCC-CceEE
Q 003979 511 EAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAP-CSVAV 589 (782)
Q Consensus 511 ~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ap-c~V~i 589 (782)
+ ..++-+..+... ..+++++.|.++|++++++.||||-+++.++ ...||+.+++++.+| .+|.|
T Consensus 307 ~-lA~~lGa~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~----------~~~~s~~~~l~r~~~~idi~i 371 (895)
T PRK10490 307 R-LAQELGAETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW----------WRRESFADRLARLGPDLDLVI 371 (895)
T ss_pred H-HHHHcCCEEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC----------ccCCCHHHHHHHhCCCCCEEE
Confidence 4 333322333222 2368999999999999999999998766431 124588999999998 78888
Q ss_pred Ee
Q 003979 590 LV 591 (782)
Q Consensus 590 ~v 591 (782)
+-
T Consensus 372 v~ 373 (895)
T PRK10490 372 VA 373 (895)
T ss_pred Ee
Confidence 63
No 64
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.64 E-value=0.14 Score=54.64 Aligned_cols=253 Identities=17% Similarity=0.169 Sum_probs=121.0
Q ss_pred hccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCC
Q 003979 107 LELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTT 186 (782)
Q Consensus 107 le~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s 186 (782)
+.||.+.+-|...+-+...+.+++...+.|.+++..++.++. ... .....-.+|--...-+.|..--.=+-.+..+.
T Consensus 126 LgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~--d~~-m~~vlPIM~GG~GaGavPLS~iYs~itg~s~~ 202 (438)
T COG3493 126 LGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQ--DTM-MYVVLPIMGGGMGAGAVPLSEIYSSITGGSQE 202 (438)
T ss_pred hhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChH--Hee-eeEEeeeccCCCCCCcccHHHHHHHHcCCCHH
Confidence 478888888888877777777777777777777777765431 000 00000001101111111211111111233455
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccch-----------------HHHHHHHHHHHHHHHHHHHHHH
Q 003979 187 QVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSS-----------------LISIWVLISGVAFVAFMLIVVR 249 (782)
Q Consensus 187 ~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~v~~ 249 (782)
+.-..++.+..+..+++++.-++.--+... .++..+++.. ..-...+.. -.....+.|...
T Consensus 203 ~~~s~lipal~igNvfAIi~aall~~iG~K-~psltGnG~Lv~~~~~~~~~ee~~~~~k~d~~~~g~-G~llA~~lf~~g 280 (438)
T COG3493 203 EYFSQLIPALTIGNVFAIICAALLNKIGKK-KPSLTGNGELVRSKSKEATEEELEKEGKLDLKLMGA-GMLLACTLFMAG 280 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCccCCceEEeccccchhhhhhhhccCccHHHHHH-HHHHHHHHHHHH
Confidence 666678888888888888877655443222 1100000000 000111111 112223333333
Q ss_pred HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHH-HhhhHHH
Q 003979 250 PIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFV-SGLLLPL 328 (782)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~-~~~f~pl 328 (782)
.+...+.. . | ..+...+++. .+-.+.+ .+|+ .-++=..++..|. +.+.-|+
T Consensus 281 ~il~kf~~-~-P------~~va~MIil~-----a~lk~~n------------lvp~---~i~~GA~~l~~F~sk~~t~~L 332 (438)
T COG3493 281 GILGKFIG-L-P------GPVAFMIILV-----AILKAAN------------LVPK---EIEEGAKQLSQFFSKNLTWPL 332 (438)
T ss_pred HHHHHhhc-C-C------chHHHHHHHH-----HHHHHhC------------cCCH---HHHHHHHHHHHHHHHhhHHHH
Confidence 33332222 2 2 1111111111 1111111 1232 1122222333332 2334443
Q ss_pred HHHHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH-HHHHHhhcccce
Q 003979 329 YFASSGLK-TDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLA-LGVLMNTKGLVE 394 (782)
Q Consensus 329 fF~~~G~~-id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~-lgl~m~~kG~~~ 394 (782)
.+.+|.. +|+..+.+..+|..+ ++.+..+++-..+.++.+++.|+-+-|+.. -|+.|+.+|...
T Consensus 333 -m~giGv~ytdl~ev~~alt~~~v-ii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtG 398 (438)
T COG3493 333 -MAGIGVAYTDLNEVAAALTWQNV-IIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTG 398 (438)
T ss_pred -HHhhhhccccHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCC
Confidence 3566776 888887765556543 344455677788899999999987777655 559998888653
No 65
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=96.60 E-value=0.011 Score=68.97 Aligned_cols=128 Identities=13% Similarity=0.163 Sum_probs=86.0
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
...||+|.+++++.++.-++.|.|+|...+++.|++||..+...... +. +++..++.+ ++
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~--------------~~-----~~~~l~~~~-~L 306 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLS--------------EK-----EARRLHENL-RL 306 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccccc--------------HH-----HHHHHHHHH-HH
Confidence 35799999999999999999999999999999999999876543210 00 222221111 22
Q ss_pred HHhcCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEE
Q 003979 690 MRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVI 769 (782)
Q Consensus 690 ~~~~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLvv 769 (782)
.++.+.. .....-++.++++..+++..+.--||+|++. ++- |.+ ..-|++.|.|++.- .+..|-+|
T Consensus 307 ae~lGae--~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~-----~~r----w~~-~~~~~l~~~L~~~~--~~idv~ii 372 (890)
T COG2205 307 AEELGAE--IVTLYGGDVAKAIARYAREHNATKIVIGRSR-----RSR----WRR-LFKGSLADRLAREA--PGIDVHIV 372 (890)
T ss_pred HHHhCCe--EEEEeCCcHHHHHHHHHHHcCCeeEEeCCCc-----chH----HHH-HhcccHHHHHHhcC--CCceEEEe
Confidence 2222322 2333346667777888887779999999998 543 422 22399999999983 34455555
Q ss_pred ee
Q 003979 770 QQ 771 (782)
Q Consensus 770 qq 771 (782)
--
T Consensus 373 ~~ 374 (890)
T COG2205 373 AL 374 (890)
T ss_pred eC
Confidence 43
No 66
>COG2855 Predicted membrane protein [Function unknown]
Probab=96.38 E-value=1.8 Score=46.23 Aligned_cols=147 Identities=23% Similarity=0.240 Sum_probs=86.3
Q ss_pred hhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHH
Q 003979 47 LIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIAL 126 (782)
Q Consensus 47 l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~ 126 (782)
.....++|..+--|+.|+++|.. ...-+... + .-.-.-+.+-++|.+ +.|.+++++++...+.+.+.+-.
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l-~~~~~~~~----~-GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~ 100 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGIL-PQIPAQTS----A-GITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIA 100 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhcc-ccchhhhc----c-chhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHH
Confidence 34457899999999999999932 22111110 0 011223445556666 56999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHH
Q 003979 127 AGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWIL 206 (782)
Q Consensus 127 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~l 206 (782)
..+..++++++.++.+++.+. ..++++|.-.|+..-.-++.+=--.| .+++....+++.-.+=..++.++
T Consensus 101 ~~l~~t~~~~~~lg~~lgld~---------~~a~Lia~GssICGasAiaA~~pvik-a~~~eva~aIa~V~lfgtia~ll 170 (334)
T COG2855 101 ITLSSTFLFAYFLGKLLGLDK---------KLALLIAAGSSICGASAIAATAPVIK-AEEEEVAVAIAVVVLFGTLAMLL 170 (334)
T ss_pred HHHHHHHHHHHHHHHHhCCCH---------HHHHHHHccchhhHHHHHHHhCCcCC-CCccccceehhhHHHHHHHHHHH
Confidence 777778888887777665543 45677776665543322222211122 23333333444333444445555
Q ss_pred HHHHHHH
Q 003979 207 LALAVSL 213 (782)
Q Consensus 207 l~~~~~~ 213 (782)
+-.+..+
T Consensus 171 yP~l~~~ 177 (334)
T COG2855 171 YPLLYPL 177 (334)
T ss_pred HHHHHHH
Confidence 5544443
No 67
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=96.10 E-value=0.24 Score=52.06 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHH
Q 003979 97 GLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLAR 176 (782)
Q Consensus 97 gl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~ 176 (782)
-+..++|-.|-++|++...+..||...+-+.-+++.++++.++..+++..-- ..+.-...+.+.+-.+++.+....=..
T Consensus 50 iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi-~~g~f~GlS~LAiiaa~~~~NggLY~a 128 (314)
T PF03812_consen 50 IIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGI-QSGFFLGLSALAIIAAMTNSNGGLYLA 128 (314)
T ss_pred HHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCcccc-ccccccchHHHHHHHHHhcCCHHHHHH
Confidence 3567889999999999999999999999888899999999888888764310 001012234566666666677777777
Q ss_pred HHHHccccCCchH
Q 003979 177 ILADLKLLTTQVG 189 (782)
Q Consensus 177 il~el~l~~s~~g 189 (782)
+..|.| -++|.|
T Consensus 129 L~~~yG-d~~D~g 140 (314)
T PF03812_consen 129 LMGQYG-DEEDVG 140 (314)
T ss_pred HHHHhC-CHHHhH
Confidence 777777 333433
No 68
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=96.02 E-value=0.066 Score=53.10 Aligned_cols=130 Identities=25% Similarity=0.411 Sum_probs=89.4
Q ss_pred HHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCch-----hHHhccchhHHHHHHHHHH
Q 003979 57 IAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLS-----SIRQNGKSAFKIALAGITL 131 (782)
Q Consensus 57 v~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~-----~l~~~~~~~~~i~~~~~~~ 131 (782)
++.+++|+++|-..... ....+...+..+.+++|.+|+++--+ .+|+.+++++.+.+..++-
T Consensus 2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45577888888533211 12236688899999999999998644 5677888999999888888
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHH
Q 003979 132 PFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAV 211 (782)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~ 211 (782)
+++.+.+++.+++.+. ..++.++.-+.- ......++.|.+ +.+.|.++.-+=++-+++++++.-++.
T Consensus 69 Sllgg~l~~~ll~~~~---------~~~lav~sG~Gw--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~~ 135 (191)
T PF03956_consen 69 SLLGGLLASLLLGLSL---------KESLAVASGFGW--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLLA 135 (191)
T ss_pred HHHHHHHHHHHhcCCH---------HHHHHHHccCcH--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887775443 344554444322 222233445544 679999999888888888887766544
Q ss_pred H
Q 003979 212 S 212 (782)
Q Consensus 212 ~ 212 (782)
-
T Consensus 136 r 136 (191)
T PF03956_consen 136 R 136 (191)
T ss_pred H
Confidence 3
No 69
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.99 E-value=0.19 Score=59.50 Aligned_cols=134 Identities=16% Similarity=0.190 Sum_probs=78.7
Q ss_pred HHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccc
Q 003979 40 TSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGK 119 (782)
Q Consensus 40 ~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~ 119 (782)
+.....++.+.+|++..+|-.++|++++.+-.. + +-...++.+..+-+.+|+..+|+++|+..+..++.
T Consensus 227 lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~------~-----~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~ 295 (621)
T PRK03562 227 LVFGFGLLMEEVGLSMALGAFLAGVLLASSEYR------H-----ALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPL 295 (621)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHhcCCccH------H-----HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 344455677778888888888999888843111 1 12344566677777888888999999998876654
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhcc-HH-HHHHHHHHccccCCchHHHHH
Q 003979 120 SAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITA-FP-VLARILADLKLLTTQVGQTAM 193 (782)
Q Consensus 120 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts-~~-vv~~il~el~l~~s~~g~l~l 193 (782)
..+.+.+..++.=++.++..+.+++.+. ..++.+|..++.-+ +. ++..+-.+.|+++.+....++
T Consensus 296 ~il~~~~~~~~~K~~~~~~~~~~~g~~~---------~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv 362 (621)
T PRK03562 296 RILILLLGFLAIKIAMLWLLARPLGVPR---------KQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLT 362 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCH---------hHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4332322222222233333334443322 45677787776532 22 344555667776655554433
No 70
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.89 E-value=0.23 Score=58.74 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=76.9
Q ss_pred HHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccch
Q 003979 41 SHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKS 120 (782)
Q Consensus 41 ~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~ 120 (782)
.....++.+.+|+...+|-.++|++++.+- +.+ +-...++.+..+-+.+++..+|+++|+..+..++..
T Consensus 225 vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~------~~~-----~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~ 293 (601)
T PRK03659 225 VLGSALFMDALGLSMALGTFIAGVLLAESE------YRH-----ELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLW 293 (601)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHhcCCc------hHH-----HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHH
Confidence 344556778889999999999999998531 111 112346667778888888999999999998876554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhcc-HH-HHHHHHHHccccCCchHH
Q 003979 121 AFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITA-FP-VLARILADLKLLTTQVGQ 190 (782)
Q Consensus 121 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts-~~-vv~~il~el~l~~s~~g~ 190 (782)
.+.+.+..++.=++.+++.+.+.+.+. ..++.+|..++..+ +. ++...-.+.|+++.+...
T Consensus 294 il~~~~~~l~~K~~~~~~~~~~~g~~~---------~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~ 356 (601)
T PRK03659 294 VLISVVVLVAVKGLVLYLLARLYGLRS---------SERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMA 356 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHH
Confidence 333322222222333333333333222 45677777766543 22 334444556666554443
No 71
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.79 E-value=3.7 Score=44.60 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhccCchhHHhccchhHHH---HHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhHHHHHHHHHHhhccH
Q 003979 96 VGLLFFLFLVGLELDLSSIRQNGKSAFKI---ALAGITLPFLFGAGVSLFL-QKAVHGENKVGYGQFIIFMGVSLSITAF 171 (782)
Q Consensus 96 lgl~~llF~~Gle~d~~~l~~~~~~~~~i---~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~l~l~~~~s~Ts~ 171 (782)
++++++||-.|++++++++++..|+...+ -+.++++-=++++.++..+ ..+ . .+.+|..+-...|
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~----------p-~l~~GliLv~~~P 115 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDL----------F-EYIAGLILLGLAR 115 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC----------H-HHHHHHHHHHhcc
Confidence 46678999999999999998755554332 2344433223455555443 211 1 2444444433222
Q ss_pred H-HHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHH
Q 003979 172 P-VLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAV 211 (782)
Q Consensus 172 ~-vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~ 211 (782)
. +.+.++..+- +.+.. +.++...++-+++.++.-...
T Consensus 116 gg~~S~v~T~lA--kGnva-lsv~lt~~stLl~~~~~P~l~ 153 (328)
T TIGR00832 116 CIAMVFVWNQLA--KGDPE-YTLVLVAVNSLFQVFLYAPLA 153 (328)
T ss_pred hHHHHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 2 2333444433 44444 556666778777776664433
No 72
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=95.45 E-value=2.6 Score=44.94 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHHhccch---hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHH
Q 003979 88 PILESLASVGLLFFLFLVGLELDLSSIRQNGKS---AFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGV 164 (782)
Q Consensus 88 ~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~ 164 (782)
.++...-...+.++||..|+.+..+++++..++ .+.....++++-=+++++++..+..+ .-+..|.
T Consensus 34 ~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~-----------~~l~~Gl 102 (319)
T COG0385 34 GWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLP-----------PELAVGL 102 (319)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----------HHHHHhH
Confidence 344445588999999999999999999865544 34333444444334445444444311 1244455
Q ss_pred HHhhccHH----HHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 003979 165 SLSITAFP----VLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAF 240 (782)
Q Consensus 165 ~~s~Ts~~----vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
.+-.+.|. .+...+. +.+ --+.++.+.++.+++.++.-+...+..++ +.+.+.....+.++..+..
T Consensus 103 ~ll~~~Pggv~S~~~t~lA-----kGn-ValsV~~tsvStll~~f~tPllv~l~~~~----~v~~~~~~m~~~i~~~vll 172 (319)
T COG0385 103 LLLGCCPGGVASNAMTYLA-----KGN-VALSVCSTSVSTLLGPFLTPLLVGLLAGG----GVPVDVGGMFLSILLQVLL 172 (319)
T ss_pred HheeeCCCchhHHHHHHHh-----cCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHHHH
Confidence 44332222 3333322 222 23556667778888887766555554431 1222444555555655556
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003979 241 VAFMLIVVRPIMDWVARQC 259 (782)
Q Consensus 241 ~~~~~~v~~~~~~~~~~~~ 259 (782)
-.+.+.+.|+......++.
T Consensus 173 P~~LG~~~r~~~~~~~~~~ 191 (319)
T COG0385 173 PFVLGQLLRPLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666677787776666655
No 73
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=95.29 E-value=0.078 Score=62.12 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=83.4
Q ss_pred cceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHH
Q 003979 432 EFRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFE 511 (782)
Q Consensus 432 e~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 511 (782)
.-|||||++.+....+.++-+..++.. .....+++|+.....+..+. .+.+++...++
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~--~~a~~~av~v~~~~~~~~~~--------------------~~~~~l~~~~~ 305 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASR--LHAKWTAVYVETPELHRLSE--------------------KEARRLHENLR 305 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHH--hCCCeEEEEEeccccccccH--------------------HHHHHHHHHHH
Confidence 368999999999999999998888754 45567777875322211110 12344444444
Q ss_pred HHhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCC-ceEEE
Q 003979 512 AYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPC-SVAVL 590 (782)
Q Consensus 512 ~~~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc-~V~i~ 590 (782)
-.++.+. .+.+ ..+ +++.++|.++|++.++.-||+|-+.+..+. +..-+++.+++++++|- +|-+
T Consensus 306 Lae~lGa-e~~~--l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~--------~~~~~~l~~~L~~~~~~idv~i- 371 (890)
T COG2205 306 LAEELGA-EIVT--LYG--GDVAKAIARYAREHNATKIVIGRSRRSRWR--------RLFKGSLADRLAREAPGIDVHI- 371 (890)
T ss_pred HHHHhCC-eEEE--EeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHH--------HHhcccHHHHHHhcCCCceEEE-
Confidence 4444322 2222 223 699999999999999999999987775443 22447889999998875 4444
Q ss_pred ecC
Q 003979 591 VDR 593 (782)
Q Consensus 591 v~r 593 (782)
++.
T Consensus 372 i~~ 374 (890)
T COG2205 372 VAL 374 (890)
T ss_pred eeC
Confidence 444
No 74
>PRK03818 putative transporter; Validated
Probab=95.22 E-value=0.55 Score=54.73 Aligned_cols=133 Identities=18% Similarity=0.294 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 003979 29 LLIIQTTLVLLTSHCLAVL-IKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGL 107 (782)
Q Consensus 29 ~~l~~i~lil~~~~~~~~l-~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gl 107 (782)
.-++.+.+.+.++++++.+ ++.+++- +.|-+++|+++|-.. . . ++.-. ......++.++|+.+|+|.+|+
T Consensus 6 ~~~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~--~--~-~~~~~---~~~~~~~~~~~gl~lFv~~vGl 76 (552)
T PRK03818 6 LTVSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFV--S--Q-FGLTL---DSDMLHFIQEFGLILFVYTIGI 76 (552)
T ss_pred HHHHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccc--c--c-cCccc---ChHHHHHHHHHHHHHHHHHHhh
Confidence 3345555666666666652 2334444 488899999999521 1 0 01101 2345778999999999999999
Q ss_pred ccCchhHH---hccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHH-HhhccHHHHHHHHHHc
Q 003979 108 ELDLSSIR---QNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVS-LSITAFPVLARILADL 181 (782)
Q Consensus 108 e~d~~~l~---~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~-~s~Ts~~vv~~il~el 181 (782)
+--+..+. +.+.+...+++.-.+++.++++.+.++++.+. ....|+. -+.|++|.+....+..
T Consensus 77 ~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~G~~aGa~T~tp~l~aa~~~~ 143 (552)
T PRK03818 77 QVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPL-----------PVMLGIFSGAVTNTPALGAGQQIL 143 (552)
T ss_pred cccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----------HHHHHHhhccccccHHHHHHHHHH
Confidence 99987764 44555555666666666666666555554322 2334443 3568877776655433
No 75
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.19 E-value=0.46 Score=46.18 Aligned_cols=126 Identities=20% Similarity=0.260 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHh-h-hccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchh
Q 003979 36 LVLLTSHCLAVL-I-KPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSS 113 (782)
Q Consensus 36 lil~~~~~~~~l-~-~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~ 113 (782)
+.+.++.+++.+ . +++++-.-.|-+++|+++|-. +...+.. . .....+.+.++|+.++++.+|++--.+.
T Consensus 4 l~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~--~~~~~~~---~---~~~~~~~l~~~GL~lFl~~VGl~aG~~F 75 (169)
T PF06826_consen 4 LGIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGAL--GRTGPIF---L---PISAPSFLRQLGLALFLAAVGLSAGPGF 75 (169)
T ss_pred HHHHHHHHhcceeeccceeccccHHHHHHHHHHHHh--hhccCCC---C---CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 2 566777777999999999952 2221111 1 3355778999999999999999988765
Q ss_pred H---HhccchhHHHHHHHHHHHHHHHHHHHH-HHHhhhccCCCCchhHHHHHHHHH-HhhccHHHHHHHHHH
Q 003979 114 I---RQNGKSAFKIALAGITLPFLFGAGVSL-FLQKAVHGENKVGYGQFIIFMGVS-LSITAFPVLARILAD 180 (782)
Q Consensus 114 l---~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~l~l~~~-~s~Ts~~vv~~il~e 180 (782)
+ |+.+.+...+++.-.++|.+++...++ +++.+. ....|.. -+.|++|......+.
T Consensus 76 ~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~-----------~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 76 FSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLNP-----------GIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-----------HHHHHHHHccccCcHHHHHHHHh
Confidence 5 455666666666666677777776666 333221 2334443 356888877766544
No 76
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=94.99 E-value=0.065 Score=45.69 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=28.4
Q ss_pred EEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEee
Q 003979 614 VCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFI 648 (782)
Q Consensus 614 Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~ 648 (782)
|++|++||+|+..++.++++.+ ..+.+++.+++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence 5799999999999999999987 446777777764
No 77
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=94.98 E-value=2.3 Score=45.98 Aligned_cols=246 Identities=14% Similarity=0.149 Sum_probs=129.2
Q ss_pred hccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHH-----hhccHHHHHHHHHHc
Q 003979 107 LELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSL-----SITAFPVLARILADL 181 (782)
Q Consensus 107 le~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~-----s~Ts~~vv~~il~el 181 (782)
+.||.+.+.|...|-+...+.+.+..++.+.+.+.+++.++. ...+++..-. ..-+.|...-.=+-+
T Consensus 40 L~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~--------~~~~~i~lPIm~GG~GaGavPLS~~Y~~~~ 111 (347)
T TIGR00783 40 LGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFD--------HSLMYIVMPIMAGGVGAGIVPLSIIYSAIT 111 (347)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--------HhhheeeehhcCCCcccchhhHHHHHHHHh
Confidence 589999999999888888888888888888888888766541 1111111111 111222211111123
Q ss_pred cccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCC-CCCcc------cch---------HHHHHHHHHHHHHHHHHH
Q 003979 182 KLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSG-AESHH------QSS---------LISIWVLISGVAFVAFML 245 (782)
Q Consensus 182 ~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~-~~~~~------~~~---------~~~~~~~~~~~~~~~~~~ 245 (782)
+.-.++.-..++.+.++.++++++.-++.-.+...-.. .+.+. .+. ...-......-.+....+
T Consensus 112 g~~~~~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~~~~~~~~~~~~~~~~~~~~~~~~~g~Gl~~a~~~ 191 (347)
T TIGR00783 112 GRSSEEIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELVRSEKREDAEKAKEITEIKIDVKLMGSGVLFAVAL 191 (347)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEeecCCcchhhhccccccCCCCHHHHHHHHHHHHHH
Confidence 43445555667777778888888776655443221000 00000 000 000000000011111112
Q ss_pred HHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHH---HH
Q 003979 246 IVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDF---VS 322 (782)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~---~~ 322 (782)
|....+.. .. .++|+..-..++|.++..-.-..++.+++-+.+ ..
T Consensus 192 y~~g~l~~----~~----------------------------~~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~ 239 (347)
T TIGR00783 192 FMAGGLLK----SF----------------------------PGIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFIS 239 (347)
T ss_pred HHHHHHHH----hc----------------------------ccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 22211111 11 144555566666666554333344555554444 23
Q ss_pred hhhHHHHHHHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHhhcccc
Q 003979 323 GLLLPLYFASSGLK-TDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRES-LALGVLMNTKGLV 393 (782)
Q Consensus 323 ~~f~plfF~~~G~~-id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~-~~lgl~m~~kG~~ 393 (782)
.-+++..++.+|+. +|+..+.+..++.. +++++..+++=.+++++.+++.|+-+-|+ +..|+.|+.+|..
T Consensus 240 ~~lt~~ll~giGla~t~l~~L~~a~t~~~-vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGt 311 (347)
T TIGR00783 240 KNLTWPLMVGVGVSYIDLDDLVAALSWQF-VVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGT 311 (347)
T ss_pred HHHHHHHHHHcccccCCHHHHHHHhchhH-hhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCC
Confidence 33444445556766 78877766333443 44566667778889999999999766665 5567788877754
No 78
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=94.87 E-value=0.088 Score=44.85 Aligned_cols=49 Identities=12% Similarity=-0.000 Sum_probs=39.9
Q ss_pred chHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchH-HHHHHHhhcCCCceE
Q 003979 532 TMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWR-EVNRTVLQNAPCSVA 588 (782)
Q Consensus 532 ~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~-~v~~~Vl~~apc~V~ 588 (782)
.+.+.+.+.|++.++|.|++|.|.....+. ...+ ++..++.+.++|||.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~--------~~~~~~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGR--------RLGASANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhh--------ccCchhhhhhcccccCCcee
Confidence 678889999999999999999988765442 2444 677899999999985
No 79
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.77 E-value=0.79 Score=53.85 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=64.6
Q ss_pred hhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHH
Q 003979 48 IKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALA 127 (782)
Q Consensus 48 ~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~ 127 (782)
.+.+|+..++|-.++|++++.+-.+ +. ..+....+..+-+.+++...|+++|+..+.+++...+.+.+.
T Consensus 243 ~~~lGls~~lGAflaGl~l~~~~~~------~~-----~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~ 311 (558)
T PRK10669 243 VELFDVSFALGAFFAGMVLNESELS------HR-----AAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAI 311 (558)
T ss_pred HHHcCccHHHHHHHHHHHHhCChhH------HH-----HHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888742111 00 011122344555677788899999999887654222211111
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhcc-H-HHHHHHHHHccccCCchHH
Q 003979 128 GITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITA-F-PVLARILADLKLLTTQVGQ 190 (782)
Q Consensus 128 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts-~-~vv~~il~el~l~~s~~g~ 190 (782)
.++.=++.++..+.+.+.++ ..++.+|..++.-+ + -+++.+-.+.|+++.+...
T Consensus 312 ~~v~K~~~~~~~~~~~g~~~---------~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~ 367 (558)
T PRK10669 312 IVFGKSLAAFFLVRLFGHSR---------RTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQN 367 (558)
T ss_pred HHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHH
Confidence 11111122222222332222 45778888877532 2 2345555666766655443
No 80
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.55 E-value=1.6 Score=43.26 Aligned_cols=106 Identities=19% Similarity=0.287 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhccCchhHHhccchhHHHH---HHHHHHHHHHHHHHH-HHHHhhhccCCCCchhHHHHHHHHHHhhccH
Q 003979 96 VGLLFFLFLVGLELDLSSIRQNGKSAFKIA---LAGITLPFLFGAGVS-LFLQKAVHGENKVGYGQFIIFMGVSLSITAF 171 (782)
Q Consensus 96 lgl~~llF~~Gle~d~~~l~~~~~~~~~i~---~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~ 171 (782)
+.+.+.||..|++++++++++..|+...+. +.++++.=+++++++ .++..+. ....|..+...+|
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~-----------~~~~Gl~l~~~~P 70 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSP-----------ALALGLLLVAACP 70 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--H-----------HHHHHHHHHHHS-
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----------HHHHHHHHHhcCC
Confidence 457889999999999999998776654432 233433333444444 3332211 1233333222111
Q ss_pred -HHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 003979 172 -PVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAG 215 (782)
Q Consensus 172 -~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~ 215 (782)
+..+.....+. +.+.. +..+...++.+.+.++.-+...+..
T Consensus 71 ~~~~s~~~t~l~--~Gd~~-ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 71 GGPASNVFTYLA--GGDVA-LSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp B-THHHHHHHHT--T--HH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHh--CCCcc-cccceeeHHHHHHHHHHHHHHHHHh
Confidence 22344444433 33333 6666666777777776655555443
No 81
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=94.44 E-value=0.31 Score=51.56 Aligned_cols=109 Identities=13% Similarity=0.224 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHH-HHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHH
Q 003979 278 VMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAV-RLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVIS 356 (782)
Q Consensus 278 ~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~-~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~ 356 (782)
....+.+++.++++..++-.++|+++... -.+. +-.+.++.+ ..+-+.++....|+++|++.+.+ .+.....+..
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~-~lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~--~~~~~~~~~~ 79 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPS-GLGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWK--LRKAAFGVGV 79 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCcc-cccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHHH
Confidence 34556788899999999999999998632 1110 011234555 45666678899999999988865 2333333333
Q ss_pred HHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHhhc
Q 003979 357 MACAGK-ILGTFVMALLCMIPVRESLALGVLMNTK 390 (782)
Q Consensus 357 ~~~~~K-~i~~~l~~~~~~~~~~~~~~lgl~m~~k 390 (782)
..++.- ++.++..+++++.++.+++.+|..+++-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~T 114 (273)
T TIGR00932 80 LQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALS 114 (273)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 333333 3444556677899999999998877654
No 82
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=94.29 E-value=9.5 Score=41.27 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchh-hH
Q 003979 272 CLTLVGVMVSGFLTDLIGI--HAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIE-AW 348 (782)
Q Consensus 272 ~~~l~~~l~~~~i~~~~g~--~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~-~~ 348 (782)
.+.+..++..+++.+.+++ ..++|+++.+..+.......-.+.+.+... ..+ +.=..+|.+++...+.... .+
T Consensus 158 ~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~~-aqv---~iG~~iG~~f~~~~l~~~~~~~ 233 (318)
T PF05145_consen 158 ALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVNA-AQV---LIGASIGSRFTRETLRELRRLL 233 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH-HHH---HHHHHHHccccHHHHHHHHHHH
Confidence 3444445556666676666 366777776666543211111122222222 112 3347889999877765422 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec
Q 003979 349 GLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV 397 (782)
Q Consensus 349 ~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl 397 (782)
+..+...+..+..-.+..++.+++.++++.+.+.- +.|-|.-+..+
T Consensus 234 ~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La---~aPGGl~eM~l 279 (318)
T PF05145_consen 234 PPALLSTLLLLALCALFAWLLSRLTGIDFLTALLA---TAPGGLAEMAL 279 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---hCCccHHHHHH
Confidence 44445555556667788888899999998866533 45777766655
No 83
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=94.09 E-value=5.3 Score=43.09 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhhccCchhHHhccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHh
Q 003979 91 ESLASVGLLFFLFLVGLELDLSSIRQNGKSA---FKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLS 167 (782)
Q Consensus 91 ~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~---~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s 167 (782)
+.....++..++|..|++++.+++++..++. ...-...+++.=++++.+........ + ..+..|....
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~----~-----~~l~~Gl~~~ 100 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL----P-----PELALGLLIL 100 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC----C-----HHHHHHHHHH
Confidence 4677888999999999999999998754443 32322333332233444444442111 1 1233444332
Q ss_pred hccHHH-HHH-HHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHH
Q 003979 168 ITAFPV-LAR-ILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFML 245 (782)
Q Consensus 168 ~Ts~~v-v~~-il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (782)
..-|.. .+. .+... .+.+ -..++..+.++.++++++.-+...+..+++ +.+.+.......++..+..=.+.+
T Consensus 101 ~~lPtTv~S~v~~T~~--AgGN-~a~Al~~~~~snllgv~ltP~ll~l~l~~~---~~~~~~~~~~~~L~~~vllP~~~G 174 (313)
T PF13593_consen 101 ACLPTTVSSSVVLTRL--AGGN-VALALFNAVLSNLLGVFLTPLLLLLLLGGS---SVSIDYASVLIKLVLTVLLPLVLG 174 (313)
T ss_pred hhCCchhhHHHHHHHH--cCCC-HHHHHHHHHHHhhhhHhHHHHHHHHHhcCC---cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 222211 111 12222 2222 235666777888888887765555444211 011222222333333344444455
Q ss_pred HHHHHHHHHHHHHh
Q 003979 246 IVVRPIMDWVARQC 259 (782)
Q Consensus 246 ~v~~~~~~~~~~~~ 259 (782)
-+.|+...+..+|.
T Consensus 175 q~~r~~~~~~~~~~ 188 (313)
T PF13593_consen 175 QLLRRWVPKWVARH 188 (313)
T ss_pred HHHHHHHHHHHHHH
Confidence 55665555444444
No 84
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.91 E-value=1.3 Score=54.33 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=32.1
Q ss_pred cccceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeec
Q 003979 430 KDEFRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVEL 473 (782)
Q Consensus 430 ~~e~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel 473 (782)
+...||.++.-+-++-..++.++..++ ++....+.++|.+..
T Consensus 628 ~~~~~v~~~F~GG~DDREALa~a~rma--~~p~v~lTVirf~~~ 669 (832)
T PLN03159 628 QVSHHVAVLFFGGPDDREALAYAWRMS--EHPGITLTVMRFIPG 669 (832)
T ss_pred ccceeEEEEecCCcchHHHHHHHHHHh--cCCCeEEEEEEEEcc
Confidence 445689999977777788888888887 445778888899854
No 85
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.35 E-value=0.68 Score=54.15 Aligned_cols=96 Identities=11% Similarity=0.189 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHh-hhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCc
Q 003979 33 QTTLVLLTSHCLAVL-IKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDL 111 (782)
Q Consensus 33 ~i~lil~~~~~~~~l-~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~ 111 (782)
.+.+++.++++++.+ .+.+++-.+.|-+++|+++|..... . -..+.++|+++|+|.+|++.-+
T Consensus 14 ~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~---------i-------~~~v~~~gl~lFvy~vG~~~Gp 77 (562)
T TIGR03802 14 ALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ---------I-------DPGVKAVFFALFIFAIGYEVGP 77 (562)
T ss_pred HHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC---------C-------ChHHHHHHHHHHHHHhhhccCH
Confidence 344455555555543 4556777788999999999964321 1 1237789999999999999998
Q ss_pred hhHHhccchhHHHHHHHH---HHHHHHHHHHHHHHH
Q 003979 112 SSIRQNGKSAFKIALAGI---TLPFLFGAGVSLFLQ 144 (782)
Q Consensus 112 ~~l~~~~~~~~~i~~~~~---~~~~~~~~~~~~~l~ 144 (782)
..++.-.|+.+...+.++ ++.+++++.++++++
T Consensus 78 ~Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g 113 (562)
T TIGR03802 78 QFFASLKKDGLREIILALVFAVSGLITVYALAKIFG 113 (562)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 887655554444444333 333344444444443
No 86
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=93.31 E-value=2 Score=45.19 Aligned_cols=248 Identities=14% Similarity=0.130 Sum_probs=130.0
Q ss_pred HHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHH
Q 003979 98 LLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARI 177 (782)
Q Consensus 98 l~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~i 177 (782)
+..++|-.|-++|++...+..||...+.+.-+++.++++.+++.+++..-- ..+.-...+.+.+-.+++.+.-..=..+
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi-~~g~~~GlS~LAiiaA~~nsNggLY~aL 129 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGV-EVGFFAGLSTLALVAAMDMTNGGLYASI 129 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCc-cccceeccHHHHHHHHHhCCcHHHHHHH
Confidence 566889999999999998888888888788888888889888888863210 0011112334445555555555555666
Q ss_pred HHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003979 178 LADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVAR 257 (782)
Q Consensus 178 l~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 257 (782)
..|.| -++|.|-..+ ..++|. +. +..+++.
T Consensus 130 ~~qyG-d~~D~gA~~i--~sl~~G-------------------------Pf------~TMi~LG---------------- 159 (314)
T TIGR00793 130 MQQYG-TKEEAGAFVL--MSLESG-------------------------PL------MTMVILG---------------- 159 (314)
T ss_pred HHHcC-CHhhhhhhhh--hhhccC-------------------------cH------HHHHHHh----------------
Confidence 66666 3434442211 111211 11 0111000
Q ss_pred HhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhccc
Q 003979 258 QCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKT 337 (782)
Q Consensus 258 ~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~i 337 (782)
. .|. .+..... +=..+-+++.|+++.|- .+++.+-+.+- ...++|+|-+..|..+
T Consensus 160 -~--sGl--A~ip~~~----------------lv~~ilPlliG~ilGNL---D~~~r~fl~~~-~~~lIpFf~FaLGagi 214 (314)
T TIGR00793 160 -T--AGI--ASFEPHV----------------FVGAVLPFLVGFALGNL---DPELRDFFSKA-VQTLIPFFAFALGNTI 214 (314)
T ss_pred -h--ccC--CCCCHHH----------------HHHHHHHHHHHHHHhcC---CHHHHHHhccC-CCeeeehhhhhhcCCC
Confidence 0 000 0000000 01133467778888773 34455555554 5789999999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CChHHHHHHHHH-Hhhcccceeec-cCh------hhHHHHHH
Q 003979 338 DVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCM-IPVRESLALGVL-MNTKGLVELIV-LND------EMFAILVL 408 (782)
Q Consensus 338 d~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~-~~~~~~~~lgl~-m~~kG~~~lvl-i~~------~~~~~lv~ 408 (782)
|++.+.+...-++++.+. .++.--...++.-++.+ -+..-+...|-. =|.....+.+- .|+ +.-+..|.
T Consensus 215 nl~~i~~aGl~GIlLGl~--v~~vtG~~~~~~dr~~~g~~g~aG~A~sstAGnAvatPaavA~adPs~~~~a~~ATaqvA 292 (314)
T TIGR00793 215 DLGVIIQTGLLGILLGVS--VIILTGIPLILADKFIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPVAPAATALVA 292 (314)
T ss_pred CHHHHHHhCcchHHHHHH--HHHHHhHHHHHHHHHhcCCCCchhhHHHHHHHHhhhhHHHHHHhChhhhhhHHHHHHHHH
Confidence 998886532223222221 12222344555556553 222223333210 11111111222 333 23344567
Q ss_pred HHHHHHHhhhhhhcc
Q 003979 409 MALFTTFMTTPMRQL 423 (782)
Q Consensus 409 ~~~v~t~i~~pl~~~ 423 (782)
++++.|.+..|++..
T Consensus 293 aavivTaiL~Pilta 307 (314)
T TIGR00793 293 TSVIVTSLLVPIATV 307 (314)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777788888888775
No 87
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=93.21 E-value=3.2 Score=46.47 Aligned_cols=102 Identities=22% Similarity=0.211 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHH-HHHHHHHHHHhhccCc
Q 003979 33 QTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLAS-VGLLFFLFLVGLELDL 111 (782)
Q Consensus 33 ~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~-lgl~~llF~~Gle~d~ 111 (782)
.+..++.+.....++.+.+|++.++|-.++|+++..+--.. .+-.+.++.+++ +=+-++....|+++|+
T Consensus 223 ~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~----------~~l~~~i~~~~~~~fiplFFi~vG~~~dl 292 (397)
T COG0475 223 FILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRK----------HELEEKIEPFGDGLFIPLFFISVGMSLDL 292 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccch----------HHHHHHHHhHHhHHHHHHHHHHhhHHcCH
Confidence 44555566667788999999999999999999999653221 123466788888 8888899999999999
Q ss_pred hhHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003979 112 SSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQ 144 (782)
Q Consensus 112 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 144 (782)
+.+.+++..++.+....++.=++..+..+..++
T Consensus 293 ~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g 325 (397)
T COG0475 293 GVLLENLLLILLLVALAILGKILGAYLAARLLG 325 (397)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999988876444443333333333444444444
No 88
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.10 E-value=0.71 Score=55.08 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=48.2
Q ss_pred HhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-H-hCCChHHHHHHHHHHhhcc
Q 003979 322 SGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMAL-L-CMIPVRESLALGVLMNTKG 391 (782)
Q Consensus 322 ~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~-~-~~~~~~~~~~lgl~m~~kG 391 (782)
..+.+++-.+..|++++...+.. .|..+..+++.....-++.+.+.++ + .+++|..++.+|.+++|..
T Consensus 75 teIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTD 144 (810)
T TIGR00844 75 SRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATD 144 (810)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCc
Confidence 56777888889999999998875 5655554444444444444444444 3 4999999999999987743
No 89
>PRK05326 potassium/proton antiporter; Reviewed
Probab=93.00 E-value=0.79 Score=53.85 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCch--HHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHH
Q 003979 273 LTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEF--AVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGL 350 (782)
Q Consensus 273 ~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~--~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~ 350 (782)
+++.+..+++.++..+|++.+++-.++|+++...... ...-.+..+.+ ..+.+++.....|+++|+..+.. .+..
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~--~~~~ 89 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRP--ALGP 89 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHH--HHHH
Confidence 3344444555667777888888888888888642110 00111233444 67888889999999999998875 3433
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhCCChHHHHHHHHHHhhcc
Q 003979 351 LVLVISMACAG-KILGTFVMALLCMIPVRESLALGVLMNTKG 391 (782)
Q Consensus 351 ~~~~v~~~~~~-K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG 391 (782)
...+....++. =.+.++...++++++|.+++.+|..+++..
T Consensus 90 ~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td 131 (562)
T PRK05326 90 ALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTD 131 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCc
Confidence 33333333322 233345566778999999999998776643
No 90
>PRK04972 putative transporter; Provisional
Probab=92.94 E-value=0.73 Score=53.78 Aligned_cols=121 Identities=21% Similarity=0.364 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHh-hhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccC
Q 003979 32 IQTTLVLLTSHCLAVL-IKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELD 110 (782)
Q Consensus 32 ~~i~lil~~~~~~~~l-~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d 110 (782)
+.+.+.+.++++++.+ ++.+++-...|-+++|+++|-.... .| ..+.++|+.+|+|.+|++--
T Consensus 15 ~~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~---------~~-------~~~~~~gl~lF~~~vG~~~G 78 (558)
T PRK04972 15 LLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS---------IN-------TDALNLGFMLFIFCVGVEAG 78 (558)
T ss_pred HHHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC---------CC-------hHHHHHHHHHHHHHHhhhhh
Confidence 3455555555565554 4557777778999999999963321 11 12458999999999999999
Q ss_pred chhHH---hccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHH-HhhccHHHHHHHHH
Q 003979 111 LSSIR---QNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVS-LSITAFPVLARILA 179 (782)
Q Consensus 111 ~~~l~---~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~-~s~Ts~~vv~~il~ 179 (782)
+..+. +.+.+...+++.-.+++.++++.++++++.+. ....|+. -+.|++|.+.....
T Consensus 79 p~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 79 PNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDI-----------GLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----------HHHHHHhhccccCcHHHHHHHH
Confidence 77664 45555555666656666666666555554332 2333333 35677777766544
No 91
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=92.88 E-value=1.2 Score=47.76 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHH----HhcchhhHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhh
Q 003979 273 LTLVGVMVSGFLTD----LIGIHAIFGAFVFGLTIPK-GGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEA 347 (782)
Q Consensus 273 ~~l~~~l~~~~i~~----~~g~~~~lgaf~aGl~~~~-~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~ 347 (782)
+.+++.....++++ ..++++.+=|.+.|+++.| .....+...+-++.. ...++.+=-+..|.++++.++.+. .
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~-G 82 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL-G 82 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh-C
Confidence 44444555555555 4688899999999999997 444555555555544 567788888999999999988762 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccccee
Q 003979 348 WGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVEL 395 (782)
Q Consensus 348 ~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~l 395 (782)
+...+..++..+..=.++.++..+.+|++.+.+..++.+.+-=|.-++
T Consensus 83 ~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi 130 (305)
T PF03601_consen 83 WKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAI 130 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHH
Confidence 322333333333333444445559999999999999887765554433
No 92
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=92.72 E-value=0.69 Score=44.23 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=65.4
Q ss_pred CCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccch----hHHHHHH
Q 003979 52 RQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKS----AFKIALA 127 (782)
Q Consensus 52 ~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~----~~~i~~~ 127 (782)
++-..-|-+++|+++|- ++...+.... .| ......+.++|+.+|++.+|++--.+.+..-.+. .+.++..
T Consensus 20 ~LG~~~G~L~vgL~~G~--~~~~~p~~~~-~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~ 93 (154)
T TIGR01625 20 KLGNAGGVLFVGLLLGH--FGATGPLTWY-IP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGAL 93 (154)
T ss_pred EecccHHHHHHHHHHHh--ccccCCccee-cC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHH
Confidence 33347789999999995 3443332222 12 2457789999999999999999987766533332 2223333
Q ss_pred HHHHHHHHHHHHHH-HHHhhhccCCCCchhHHHHHHHHH-HhhccHHHHHHHHHHc
Q 003979 128 GITLPFLFGAGVSL-FLQKAVHGENKVGYGQFIIFMGVS-LSITAFPVLARILADL 181 (782)
Q Consensus 128 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~l~l~~~-~s~Ts~~vv~~il~el 181 (782)
-.++|.+++..+.. +++.+. ....|.. -+.|++|.+....+..
T Consensus 94 v~~~~~~~~~~~~~~~~~~~~-----------~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 94 ITVVPTLLVAVALIKLLRINY-----------ALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHHHHhCCCH-----------HHHHHHHhccccChHHHHHHHHHh
Confidence 33344444443332 233221 2444444 4668888877665543
No 93
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=92.67 E-value=0.83 Score=49.48 Aligned_cols=105 Identities=13% Similarity=0.192 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-----------cCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHH
Q 003979 29 LLIIQTTLVLLTSHCLAVLIKP-----------LRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVG 97 (782)
Q Consensus 29 ~~l~~i~lil~~~~~~~~l~~r-----------l~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lg 97 (782)
.-+.+..++..+..+++++.+| .++|.++-..++=.+++.. + .+|++....++.++++-
T Consensus 216 vKl~Rvl~L~pv~~~la~~~~~~~~~~~~~~~~~~~P~FvlgFl~~~~l~S~--~--------~lp~~~~~~l~~~~~~l 285 (335)
T TIGR00698 216 IKMLRVMMLAPFLLILSIIYSRSDGISENESSKITIPWFAVLFIGVAIFNSF--D--------LLPGEVVQALVPLDTFL 285 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCChHHHHHHHHHHHHHh--h--------hCcHHHHHHHHHHHHHH
Confidence 3455556665555566555532 3456654443333333321 2 24445567789999999
Q ss_pred HHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 003979 98 LLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFL 143 (782)
Q Consensus 98 l~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 143 (782)
+.+-|+-+|+++|++++|+.+.|.+..+....+.-.+.++.+.+++
T Consensus 286 l~~AmaaiGl~t~~~~l~~~G~kp~~~g~i~~~~l~~~~~~l~~~~ 331 (335)
T TIGR00698 286 LATAMAALGLTTNVSAVKKAGVKPLFASYAGYLWLVGGGFVLNYLI 331 (335)
T ss_pred HHHHHHHHhhcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877665555555444443
No 94
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=92.62 E-value=16 Score=38.84 Aligned_cols=151 Identities=12% Similarity=0.098 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhhccCchhHHhccch--hHHHHH-HHHH-HHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHH-h
Q 003979 93 LASVGLLFFLFLVGLELDLSSIRQNGKS--AFKIAL-AGIT-LPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSL-S 167 (782)
Q Consensus 93 l~~lgl~~llF~~Gle~d~~~l~~~~~~--~~~i~~-~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~-s 167 (782)
+.-..+.+.||..|+.++.+++++..++ ....++ ..++ .|.+. +.++.+++.+. ....|..+ +
T Consensus 9 ~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l~~-----------~~~~glvL~~ 76 (286)
T TIGR00841 9 ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKLPP-----------ELAVGVLIVG 76 (286)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCCCH-----------HHHHHHHhee
Confidence 3334488999999999999999886663 333333 3443 45443 44444443221 12233332 2
Q ss_pred hccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 003979 168 ITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIV 247 (782)
Q Consensus 168 ~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 247 (782)
.+..++.+.++.+.---|. .++.+...++-+.+++..-+...+......+.+-+.+....... +..+..-++.+.+
T Consensus 77 ~~P~~~~s~v~t~~~~gn~---~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~ 152 (286)
T TIGR00841 77 CCPGGTASNVFTYLLKGDM---ALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGML 152 (286)
T ss_pred eCCCchHHHHHHHHhCCCH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHH
Confidence 2222233344444432333 34444445555555555544433332110000001222222333 3333344445556
Q ss_pred HHHHHHHHHHHh
Q 003979 248 VRPIMDWVARQC 259 (782)
Q Consensus 248 ~~~~~~~~~~~~ 259 (782)
.|+...+..++.
T Consensus 153 ~r~~~p~~~~~~ 164 (286)
T TIGR00841 153 VKHKLPQIAKII 164 (286)
T ss_pred HHHHhHHHHHHH
Confidence 666555555554
No 95
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.02 E-value=2.3 Score=40.83 Aligned_cols=97 Identities=19% Similarity=0.224 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhhccCCC--hhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchh
Q 003979 36 LVLLTSHCLAVLIKPLRQP--KVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSS 113 (782)
Q Consensus 36 lil~~~~~~~~l~~rl~~P--~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~ 113 (782)
+.+.++.+.+++++++|+| .++|.++++.++.-. +..+ ...-+.+.+.+.+++--.+|.+++.+.
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~--~~~~-----------~~~P~~~~~~~qviiG~~iG~~f~~~~ 68 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLA--GGLE-----------ITLPPWLLALAQVVIGILIGSRFTREV 68 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhc--CCcc-----------CCCCHHHHHHHHHHHHHHHHccCCHHH
Confidence 3456778889999999988 667777777766622 2111 112345677788888889999999999
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003979 114 IRQNGKSAFKIALAGITLPFLFGAGVSLFLQKA 146 (782)
Q Consensus 114 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 146 (782)
+++..+... ..+...++....+.+.++++...
T Consensus 69 l~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~ 100 (156)
T TIGR03082 69 LAELKRLWP-AALLSTVLLLALSALLAWLLARL 100 (156)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 987776544 33444455555566666666443
No 96
>COG2855 Predicted membrane protein [Function unknown]
Probab=91.96 E-value=0.86 Score=48.64 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=76.8
Q ss_pred HHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHH
Q 003979 285 TDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKIL 364 (782)
Q Consensus 285 ~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i 364 (782)
.+..|++..+=|.+.|+++....+...+...-++.- ...++.+=-++.|+++++.++.+- .+. .+.+.+..+..-++
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~~-~v~~~~~~l~~t~~ 108 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GGS-GVLIIAITLSSTFL 108 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Ccc-HHHHHHHHHHHHHH
Confidence 344566688889999999986555555555555554 567777888999999999988762 222 33445555666777
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcccc
Q 003979 365 GTFVMALLCMIPVRESLALGVLMNTKGLV 393 (782)
Q Consensus 365 ~~~l~~~~~~~~~~~~~~lgl~m~~kG~~ 393 (782)
.++..++++|+|++.++.+|.+-+-=|.-
T Consensus 109 ~~~~lg~~lgld~~~a~Lia~GssICGas 137 (334)
T COG2855 109 FAYFLGKLLGLDKKLALLIAAGSSICGAS 137 (334)
T ss_pred HHHHHHHHhCCCHHHHHHHHccchhhHHH
Confidence 88888889999999999988866555543
No 97
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=91.95 E-value=20 Score=38.44 Aligned_cols=186 Identities=17% Similarity=0.200 Sum_probs=91.0
Q ss_pred hccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccchh--HHH-H
Q 003979 49 KPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSA--FKI-A 125 (782)
Q Consensus 49 ~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~--~~i-~ 125 (782)
+|+--+-+.-.+++|+.+|-..-+..+. .+ .-+....+.--.+|+.+.|+=.=+++|++++++..++. +.+ -
T Consensus 13 dk~l~~wv~l~i~~Gi~lG~~~p~~~~~-l~----~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL 87 (342)
T COG0798 13 DKYLTLWVFLAIAIGILLGVHFPGLAQL-LG----KLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSL 87 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhh-cc----cceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHH
Confidence 3333334566678888888554331110 00 00122344555678888888888999999998755443 222 2
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHH
Q 003979 126 LAGITL-PFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAW 204 (782)
Q Consensus 126 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i 204 (782)
...+++ |++. +.+++++..+. + ....|.++-.-+ |.++-++.=.++.+.+. ..++....+||++.+
T Consensus 88 ~~Nwii~P~lm-~~la~~fl~~~---------p-ey~~GlILlglA-pC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qi 154 (342)
T COG0798 88 FVNWIIGPLLM-FALAWFFLPDE---------P-EYRAGLILLGLA-PCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQI 154 (342)
T ss_pred HHHHHHHHHHH-HHHHHHHhCCC---------H-HHHHHHHHHHhh-hhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHH
Confidence 233333 4333 33333332221 1 122333332221 11222221123333333 345556678999999
Q ss_pred HHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003979 205 ILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQC 259 (782)
Q Consensus 205 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 259 (782)
++++....+.-+. .+..-..+.++..+...++.-++.+...+++..|.
T Consensus 155 v~y~~~~~~~l~v-------~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 155 VLYAPLGKFFLGV-------ISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred HHHHHHHHHHHhh-------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8886555433321 11112344455554444555555566666666665
No 98
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=90.77 E-value=2.3 Score=49.84 Aligned_cols=115 Identities=21% Similarity=0.342 Sum_probs=73.2
Q ss_pred ccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhH---HhccchhHHHHH
Q 003979 50 PLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSI---RQNGKSAFKIAL 126 (782)
Q Consensus 50 rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~i~~ 126 (782)
++.+-...|-+++|+++|- ++...+..+. .| .....++.++|+.+|++.+|++--.+.+ ++.+.+.+.++.
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~ 485 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFGN-IP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI 485 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCccee-cC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence 3445556788999999985 3333221111 22 2456679999999999999999887655 555556666666
Q ss_pred HHHHHHHHHHHHHHH-HHHhhhccCCCCchhHHHHHHHHH-HhhccHHHHHHHHHHc
Q 003979 127 AGITLPFLFGAGVSL-FLQKAVHGENKVGYGQFIIFMGVS-LSITAFPVLARILADL 181 (782)
Q Consensus 127 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~l~l~~~-~s~Ts~~vv~~il~el 181 (782)
.-.++|.++++.++. +++.+. ....|++ -+.|++|......+..
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 486 VVTILPLIITMLIGKYVLKYDP-----------ALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHhCCCH-----------HHHHHHhhccCCCcHHHHHHHHhc
Confidence 666667777766663 444322 2444544 4678888777664433
No 99
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=90.60 E-value=1.1 Score=52.05 Aligned_cols=114 Identities=18% Similarity=0.274 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchH-HHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHHHHHH
Q 003979 276 VGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFA-VRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLV 354 (782)
Q Consensus 276 ~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~-~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~ 354 (782)
+.+.....+++.++++..++-+++|+++...+... -.+.. +.+ ..+++|......|+++|+..+.. .+..+..+
T Consensus 8 ~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~~~-~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i~~l 82 (525)
T TIGR00831 8 MLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--EIV-LFLFLPPLLFEAAMNTDLRELRE--NFRPIALI 82 (525)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--HHH-HHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHH
Confidence 33344445666777777777777777765211100 00111 112 45788999999999999998875 44333333
Q ss_pred HHHHH-HHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccce
Q 003979 355 ISMAC-AGKILGTFVMALLCMIPVRESLALGVLMNTKGLVE 394 (782)
Q Consensus 355 v~~~~-~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~ 394 (782)
.+... +.-.+.++...+..++||..++.+|..+++..-+.
T Consensus 83 a~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpva 123 (525)
T TIGR00831 83 AFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVA 123 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHH
Confidence 33333 33333344444567999999999999988866543
No 100
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=90.47 E-value=29 Score=37.61 Aligned_cols=99 Identities=24% Similarity=0.345 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCh--hHH-HHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 003979 31 IIQTTLVLLTSHCLAVLIKPLRQPK--VIA-EILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGL 107 (782)
Q Consensus 31 l~~i~lil~~~~~~~~l~~rl~~P~--iv~-~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gl 107 (782)
..+..+.++++...++++..+++|. +.| -+++|++.+-.... ...-+.+...|.+.+=-.+|.
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~--------------l~~P~~l~~~~q~ilG~~ig~ 73 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT--------------LPLPRGLFKAGQVILGIMIGA 73 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc--------------ccCChHHHHHHHHHHHHHHhh
Confidence 5678888889999999999988764 566 66777777722111 111255667777777789999
Q ss_pred ccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003979 108 ELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQ 144 (782)
Q Consensus 108 e~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 144 (782)
.+..+.+....+ -+.+.....+++...+.+.++++.
T Consensus 74 ~~t~s~l~~l~~-~w~~~~~v~~~tl~~s~l~g~ll~ 109 (352)
T COG3180 74 SLTPSVLDTLKS-NWPIVLVVLLLTLLSSILLGWLLK 109 (352)
T ss_pred hcCHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 998887754332 222333334445555555555553
No 101
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=88.91 E-value=2.7 Score=41.56 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=33.2
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 003979 613 RVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIG 649 (782)
Q Consensus 613 ~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~ 649 (782)
||++++.||.|+.-++..+++.++..+.+++++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5899999999999999999999887788899999864
No 102
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=88.46 E-value=8.2 Score=41.75 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=38.0
Q ss_pred HHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 003979 99 LFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQK 145 (782)
Q Consensus 99 ~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 145 (782)
..++|-.|..+|++...+..|+...+.+.-+.+.++++.+...+++.
T Consensus 54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~ 100 (326)
T PRK05274 54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGE 100 (326)
T ss_pred HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchH
Confidence 47889999999999988888888888777777777777776666653
No 103
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=88.00 E-value=6.6 Score=37.67 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhcch--hhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchh-hHHHH
Q 003979 275 LVGVMVSGFLTDLIGIH--AIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIE-AWGLL 351 (782)
Q Consensus 275 l~~~l~~~~i~~~~g~~--~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~-~~~~~ 351 (782)
+......+++.+.+|+. .++|+++++.++.-.....-++.+.+.... .-+.=..+|.+++...+.+.. .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~~~----qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLALA----QVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHHHH----HHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 34455566677888885 888998888877632211112233333332 223447889999987776432 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec
Q 003979 352 VLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV 397 (782)
Q Consensus 352 ~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl 397 (782)
+..++..++.-++..++..+..++++.+++. + ..|-|.-+...
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~L-a--~~PGGl~~m~~ 122 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAFL-A--TSPGGASEMAA 122 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-H--hCCchHHHHHH
Confidence 5555566667778888899999999988863 3 35777666554
No 104
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=87.80 E-value=4 Score=43.39 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=54.7
Q ss_pred hHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHH
Q 003979 56 VIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLF 135 (782)
Q Consensus 56 iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~ 135 (782)
.+-.|+.|+++|+..- ..++ .++.=-.+++.+..|..|.++|++.+.+.+...+.+++..+.+++.+
T Consensus 169 lilpILiGmilGNld~-~~~~------------~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNLDP-DMRK------------FLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhccch-hhHH------------HHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 5566778888887211 1111 11111223888899999999999999999999999998888888887
Q ss_pred HHHHHHHHH
Q 003979 136 GAGVSLFLQ 144 (782)
Q Consensus 136 ~~~~~~~l~ 144 (782)
++.+..+++
T Consensus 236 ~~~i~rllg 244 (312)
T PRK12460 236 NIFADRLVG 244 (312)
T ss_pred HHHHHHHhC
Confidence 777776664
No 105
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=86.88 E-value=13 Score=40.12 Aligned_cols=134 Identities=18% Similarity=0.242 Sum_probs=79.8
Q ss_pred cCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHH
Q 003979 51 LRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGIT 130 (782)
Q Consensus 51 l~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~ 130 (782)
++.|.+++.+ .|+++...... +|.--.+.++.+++...-+-||..|+.++.+.+++..+........-.+
T Consensus 180 ~~nP~iia~i-~Gl~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli 249 (321)
T TIGR00946 180 IKFPPLWAPL-LSVILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL 249 (321)
T ss_pred HhCCChHHHH-HHHHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence 5778877665 45777643322 2333467899999999999999999999998888777777666666654
Q ss_pred H-HHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHH
Q 003979 131 L-PFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLA 208 (782)
Q Consensus 131 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~ 208 (782)
+ |.+. +++...++.+ ....-..+.++...+++...++.+.--.+. +.+-+...++-+++++.+.
T Consensus 250 l~P~i~-~~~~~~~~l~----------~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tlp 314 (321)
T TIGR00946 250 VQPAVM-AGISKLIGLR----------GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISLP 314 (321)
T ss_pred HHHHHH-HHHHHHhCCC----------hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 4 5444 4444444321 112334455555555666666655431332 3334444444444444433
No 106
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=86.84 E-value=23 Score=35.88 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=79.0
Q ss_pred HHHHHhhhccCC----ChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhc
Q 003979 42 HCLAVLIKPLRQ----PKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQN 117 (782)
Q Consensus 42 ~~~~~l~~rl~~----P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~ 117 (782)
.+.-++.||.+- |-+++.++...+|-.. |. +|.++. ++.++++.+ +|-...-|..-+--+++.+||+
T Consensus 19 ~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~~--~i--~Y~~Y~---~g~~~i~~l--LgPAtVAlAvPLYkq~~~ik~~ 89 (230)
T COG1346 19 FAAKRLYKRTKSPFLNPLLVATVLLIAFLLLF--GI--SYEDYM---KGGQWINFL--LGPATVALAVPLYKQRHLIKRH 89 (230)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHHHc--CC--CHHHHh---cccHHHHHH--HHHHHHHHhhHHHHHHHHHHHH
Confidence 344456666663 5555555444444321 21 122211 234556555 4445566667777889999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHH-hhccHHHHHHHHHHccccCCchHHHHHHHH
Q 003979 118 GKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSL-SITAFPVLARILADLKLLTTQVGQTAMAAA 196 (782)
Q Consensus 118 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~-s~Ts~~vv~~il~el~l~~s~~g~l~l~~a 196 (782)
|+..+.-...+.++.+..+..++.+++.+. .+.....- |.| .|+.+.+=+++|-.+.-..-.++-.+
T Consensus 90 w~~I~~g~~vGs~~ai~s~~llak~~g~~~-----------~~~~Sl~PkSvT-TpiAm~vs~~iGGip~ltav~Vi~tG 157 (230)
T COG1346 90 WKPILAGVLVGSVVAIISGVLLAKLFGLSP-----------ELILSLLPKSVT-TPIAMEVSESIGGIPALTAVFVILTG 157 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----------HHHHHhcccccc-cHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 999988878888888777777777776432 12222222 344 46677776666643333333333333
Q ss_pred HHHhHHHH
Q 003979 197 AFNDVVAW 204 (782)
Q Consensus 197 ~i~D~~~i 204 (782)
++.-+++-
T Consensus 158 i~Gavlg~ 165 (230)
T COG1346 158 ILGAVLGP 165 (230)
T ss_pred HHHHHHHH
Confidence 33333333
No 107
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=86.74 E-value=17 Score=40.57 Aligned_cols=167 Identities=15% Similarity=0.122 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHhhhc--cCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 003979 32 IQTTLVLLTSHCLAVLIKP--LRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLEL 109 (782)
Q Consensus 32 ~~i~lil~~~~~~~~l~~r--l~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~ 109 (782)
..+.+...+++.+...++. +.+|..++.+++|+++.+.. ..... .. -..+.++.++++.+-+++..+=..+
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~~~~-----~~-~~~~~i~~I~~~sLdlfl~~AlmsL 294 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SFKKF-----PW-VAERAVSVIGNVSLSLFLAIALMSL 294 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HHhCc-----cc-cchHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555566777776764 77999999999999998642 11110 00 1235899999999999999988999
Q ss_pred CchhHHhccchhHHHHHHHHHHHHHHHH-HHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHH-HHHH-HHccccCC
Q 003979 110 DLSSIRQNGKSAFKIALAGITLPFLFGA-GVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVL-ARIL-ADLKLLTT 186 (782)
Q Consensus 110 d~~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv-~~il-~el~l~~s 186 (782)
++..+....-+.+.+.+.+.++..+... +....++.+++ - .-..+-..|..+..|+.++. ++.+ ++.|-.+.
T Consensus 295 ~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~yd----a-aV~~ag~~G~~lGatptaianm~av~~~yg~s~~ 369 (398)
T TIGR00210 295 QLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYD----A-AVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQ 369 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHH----H-HHHhcccccccccchHHHHHHHHHHHhccCCCCc
Confidence 9999999999999998888887765443 33334443331 0 00111334444545444322 2222 33342222
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHH
Q 003979 187 QVGQTAMAAAAFNDVVAWILLALA 210 (782)
Q Consensus 187 ~~g~l~l~~a~i~D~~~i~ll~~~ 210 (782)
-.=-+=+-.+.+-|++..++....
T Consensus 370 af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 370 AFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred ceehhhhHHHHHHHHhhHHHHHHH
Confidence 222244556777888777665544
No 108
>PRK04972 putative transporter; Provisional
Probab=86.38 E-value=6.5 Score=46.00 Aligned_cols=131 Identities=16% Similarity=0.213 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHhhhc-----cCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 003979 33 QTTLVLLTSHCLAVLIKP-----LRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGL 107 (782)
Q Consensus 33 ~i~lil~~~~~~~~l~~r-----l~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gl 107 (782)
.+++-++++.+++.+-=+ +++-.--|.+++|+++|- ++...+..+. .| .....++.++|+.+|+..+|+
T Consensus 385 ~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vGl 458 (558)
T PRK04972 385 AFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPTFGY-IP---QGALNMVKEFGLMVFMAGVGL 458 (558)
T ss_pred HHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCCcee-eC---HHHHHHHHHHhHHHHHHHHHH
Confidence 444455555666654333 334445688999999994 4444443332 22 345778999999999999999
Q ss_pred ccCchhH---HhccchhHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhHHHHHHHH-HHhhccHHHHHHHHHH
Q 003979 108 ELDLSSI---RQNGKSAFKIALAGITLPFLFGAGVSLFL-QKAVHGENKVGYGQFIIFMGV-SLSITAFPVLARILAD 180 (782)
Q Consensus 108 e~d~~~l---~~~~~~~~~i~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~l~l~~-~~s~Ts~~vv~~il~e 180 (782)
.--.+.+ ++.+.+.+.++..-.++|.++++.+++++ +.++ ...+|. +-+.|++|......+.
T Consensus 459 ~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~-----------~~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 459 SAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNR-----------ALLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-----------HHHHHHHhCCCCCcHHHHHHHhh
Confidence 8776554 55566666666666777777777777443 3322 244454 4466888877665433
No 109
>COG2985 Predicted permease [General function prediction only]
Probab=85.14 E-value=6.5 Score=43.93 Aligned_cols=142 Identities=23% Similarity=0.290 Sum_probs=74.3
Q ss_pred HHHHHhhhccC-CC-----hhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhH-
Q 003979 42 HCLAVLIKPLR-QP-----KVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSI- 114 (782)
Q Consensus 42 ~~~~~l~~rl~-~P-----~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l- 114 (782)
..++..+.|+| .- -..+-++.|.+++...+.... +.+.+ ++|+++|.+.+|+|--+..+
T Consensus 17 l~lgl~~gkIr~fG~gigg~l~g~L~Vgl~l~~~~~~i~~------------~~l~f--~lGL~LFVy~iGl~aGP~FFs 82 (544)
T COG2985 17 LALGLGFGKIRGFGLGIGGVLFGVLFVGLFLGQYGFTINT------------DMLHF--ELGLILFVYTIGLEAGPGFFS 82 (544)
T ss_pred HHHHhhhceeEEeccccccchhhHhHHHHHhccccccccc------------chhhh--hhhhhHhhhhhhheecccHhH
Confidence 34445555555 22 234556666666655444332 22333 99999999999999987665
Q ss_pred --HhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHH-HhhccHHHHH---HHHHHccccCCch
Q 003979 115 --RQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVS-LSITAFPVLA---RILADLKLLTTQV 188 (782)
Q Consensus 115 --~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~-~s~Ts~~vv~---~il~el~l~~s~~ 188 (782)
|+.+++-..+++.- ++.+....++++..+ +++. .+..|.. -+.||+|... .++.|++.-..-.
T Consensus 83 s~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~----~~~~---~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~~~~~~ 151 (544)
T COG2985 83 SFRKSGLNLNAFALLI----VIAALLLAWVLHKLF----GIDL---GLIAGMFSGALTSTPGLGAAQDILRELGAPSQAL 151 (544)
T ss_pred HHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhc----CCCH---HHhhhhhcccccCCchhHHHHHHHHhhccchhhh
Confidence 66666666555432 334444445555443 3332 2223322 2446665544 4677776332222
Q ss_pred HHHH--HHHHHHHhHHHHHHHH
Q 003979 189 GQTA--MAAAAFNDVVAWILLA 208 (782)
Q Consensus 189 g~l~--l~~a~i~D~~~i~ll~ 208 (782)
-+.. .+.+-.--++++++.+
T Consensus 152 ~~~~~gYamaYp~Gil~ii~~~ 173 (544)
T COG2985 152 DQMGMGYALAYPIGILGIILGA 173 (544)
T ss_pred hhhhhhhhhhhhHHHHHHHHHH
Confidence 2333 3333344455555544
No 110
>PRK03818 putative transporter; Validated
Probab=84.15 E-value=23 Score=41.41 Aligned_cols=105 Identities=20% Similarity=0.291 Sum_probs=68.0
Q ss_pred hHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHh----ccchhHHHHHHHHHH
Q 003979 56 VIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQ----NGKSAFKIALAGITL 131 (782)
Q Consensus 56 iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~----~~~~~~~i~~~~~~~ 131 (782)
--|.+++|+++|- ++...+..+. .| ......+.++|+.+|+..+|++--.+.+.. .+.+.+.++..-.++
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLYWF-MP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCceee-cC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4678999999995 3443332222 22 245678999999999999999888766543 345555566666667
Q ss_pred HHHHHHHHHHH-HHhhhccCCCCchhHHHHHHHHH-HhhccHHHHHHH
Q 003979 132 PFLFGAGVSLF-LQKAVHGENKVGYGQFIIFMGVS-LSITAFPVLARI 177 (782)
Q Consensus 132 ~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~l~~~-~s~Ts~~vv~~i 177 (782)
|.++++.++.+ ++.+. ...+|.. -+.|++|.....
T Consensus 477 ~~~~~~~~~~~~~~~~~-----------~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 477 PLLIVGILARMLAKMNY-----------LTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHcCCH-----------HHHHHHHhccCCCcHHHHHH
Confidence 77777777543 44322 2444543 466888876654
No 111
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=83.88 E-value=53 Score=33.42 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=47.3
Q ss_pred EEEeEEecCCC-chHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEE
Q 003979 521 IRHSTAISALS-TMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVL 590 (782)
Q Consensus 521 v~~~~~v~~~~-~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~ 590 (782)
..+++.++|.+ ...++|.+.+.+.+.|.|++|- .+|.. ......+.+++-++...||.++
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGG-----S~gvt-----~~~~~~~v~~ik~~~~lPvilf 76 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGG-----SDGVT-----EENVDNVVEAIKERTDLPVILF 76 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEECC-----ccccc-----HHHHHHHHHHHHhhcCCCEEEe
Confidence 34577889988 8999999999999999999994 34331 1246677788877999999886
No 112
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=83.26 E-value=9.8 Score=37.41 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=32.7
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003979 613 RVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQ 650 (782)
Q Consensus 613 ~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~ 650 (782)
+|+|++.||.|+-..+..+.++.+..+.++++++|...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~ 38 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHG 38 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-S
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 68999999999999999999999999999999999754
No 113
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=82.71 E-value=8.1 Score=37.87 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=32.9
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 003979 613 RVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIG 649 (782)
Q Consensus 613 ~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~ 649 (782)
+|++.+.||.|+--++.++++...+.+.+++++++..
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~ 37 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDH 37 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 5889999999999999999999877788899999864
No 114
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=82.27 E-value=43 Score=34.27 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHH
Q 003979 87 TPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSL 166 (782)
Q Consensus 87 ~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~ 166 (782)
.++++.+ +|-+...|..-+--+++.+||+++..+.-...|.++.+..+..++.+++.+. .+..+..-
T Consensus 64 ~~~l~~l--LgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~-----------~~~~Sl~p 130 (232)
T PRK04288 64 GDIISFF--LEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDN-----------AVMASMLP 130 (232)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH-----------HHHHHHhh
Confidence 4455544 4444455555666789999999998887777888888777777777776432 23333333
Q ss_pred hhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHH
Q 003979 167 SITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWIL 206 (782)
Q Consensus 167 s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~l 206 (782)
-+...|+.+.+-++.|- .-.++....+++-+++.++
T Consensus 131 KSVTtPIAm~is~~iGG----~psLtA~~ViitGi~Gai~ 166 (232)
T PRK04288 131 QAATTAIALPVSAGIGG----IKEITSFAVIFNAVIIYAL 166 (232)
T ss_pred HhhhHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHHHH
Confidence 33345677777666662 2333334444444444443
No 115
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=81.48 E-value=20 Score=35.42 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhhhcc---CCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHH-------HHH
Q 003979 33 QTTLVLLTSHCLAVLIKPL---RQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLL-------FFL 102 (782)
Q Consensus 33 ~i~lil~~~~~~~~l~~rl---~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~-------~ll 102 (782)
.+.++=++.++.+++.||+ |++.----|+.|+++...+ |....- .+....+..++.+|++ |-.
T Consensus 17 aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~TgG------~kGlaDi~lfsGiglmGGaMlRDfAI 89 (254)
T TIGR00808 17 AFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTGG------EKGLADIAIFGGFGLMGGAMLRDLAI 89 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccCC------ccccchhhhhcchhhhhhHHHHHHHH
Confidence 3444444455555666665 5555555677888875322 111100 0112223333333332 223
Q ss_pred HHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003979 103 FLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKA 146 (782)
Q Consensus 103 F~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 146 (782)
-.-..|.|.+++||.+..-..--+.+.++||+.+..+.+.+++.
T Consensus 90 vaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 90 VATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred HHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45677999999999998887777789999999999999988764
No 116
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=80.88 E-value=18 Score=39.18 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCCC--hhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 003979 32 IQTTLVLLTSHCLAVLIKPLRQP--KVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLEL 109 (782)
Q Consensus 32 ~~i~lil~~~~~~~~l~~rl~~P--~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~ 109 (782)
.++.+++.++...+++++|+|+| .++|-++.+.++.-...... ..-+.+..++.+++=-.+|.++
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~-------------~~P~~l~~~aqv~iG~~iG~~f 221 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSF-------------SLPPWLVNAAQVLIGASIGSRF 221 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCC-------------CCCHHHHHHHHHHHHHHHHccc
Confidence 35667777888999999999986 45777777766664321110 1123355666667777999999
Q ss_pred CchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003979 110 DLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQ 144 (782)
Q Consensus 110 d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 144 (782)
+.+.+|+..|... .++...+.-+.++.++++.+.
T Consensus 222 ~~~~l~~~~~~~~-~~l~~~~~~l~~~~~~a~~l~ 255 (318)
T PF05145_consen 222 TRETLRELRRLLP-PALLSTLLLLALCALFAWLLS 255 (318)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999988765444 444444444455555555554
No 117
>COG2431 Predicted membrane protein [Function unknown]
Probab=78.77 E-value=40 Score=35.07 Aligned_cols=129 Identities=19% Similarity=0.285 Sum_probs=70.0
Q ss_pred hhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccC---chhHH-hccchhHHHHHHHHH
Q 003979 55 KVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELD---LSSIR-QNGKSAFKIALAGIT 130 (782)
Q Consensus 55 ~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d---~~~l~-~~~~~~~~i~~~~~~ 130 (782)
.+.+..+.|+++|-..-... ...+...+..+.+++|.+|.++. ...-+ .--|+.+.++...++
T Consensus 108 k~~~~vl~g~~~G~l~~~~~-------------~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFL-------------NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhcccc-------------cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHH
Confidence 56677888888884321111 11456788999999999999887 22111 122667777776666
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHH
Q 003979 131 LPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLAL 209 (782)
Q Consensus 131 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~ 209 (782)
-..+-|.+.+.+++.+. ..++.++.-+.= ......++.|- -+...|..+.=.-+.-+.+++.+.-+
T Consensus 175 ssliGG~iaa~~l~lpl---------~~~lAmasG~GW--YSlsG~ll~~a--~~pv~Gsiafl~nl~RE~lai~liP~ 240 (297)
T COG2431 175 SSLIGGLIAAFLLDLPL---------TTGLAMASGFGW--YSLSGILLTEA--YGPVLGSIAFLNNLLRELLAIVLIPL 240 (297)
T ss_pred HHHHHHHHHHHHHhccH---------HHHHHHHhccch--hhhhhHHHhcc--cCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665433 222333322211 11223333331 23556665554555555555555443
No 118
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=78.73 E-value=7.7 Score=40.47 Aligned_cols=109 Identities=11% Similarity=0.127 Sum_probs=63.3
Q ss_pred EeccCCcchHHHHHHHHHHhcCCC-eEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHHHHh-c
Q 003979 616 IIFFGGPDDRRALDLGGRMAENPG-GNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDFMRK-W 693 (782)
Q Consensus 616 v~~~g~~~~~~al~~a~~la~~~~-~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 693 (782)
+++.=.|.|+.|++.|.|+.++.+ .+++++.+-++... +++.+.+...+ .
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~----------------------------~~~~lr~aLAmGa 81 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT----------------------------NAKGRKDVLSRGP 81 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh----------------------------hHHHHHHHHHcCC
Confidence 355567999999999999998765 89999999764321 12334443334 2
Q ss_pred CCcEEEEEEEe--cChHHH---HHH-hhcccCCcEEEEccCC--CCcccccc-ccccCCCCcccccchhh
Q 003979 694 GGSVEYEEKVM--ANVKDE---VLK-IGQIRDYELVVVGKGR--FPSTIEAE-LADHQPENVGLGLIGNI 754 (782)
Q Consensus 694 ~~~v~~~e~~v--~~g~~~---~~~-~~~~~~~DLivvG~~g--~~~~~~~G-L~~~w~e~~~LG~vgd~ 754 (782)
++-+....... .+...+ +.. +++. +||||+.|++- .++.+.-. +.+ |-.+|.+..+.+.
T Consensus 82 D~avli~d~~~~g~D~~~tA~~La~ai~~~-~~DLVl~G~~s~D~~tgqvg~~lAe-~Lg~P~vt~v~~l 149 (256)
T PRK03359 82 DELIVVIDDQFEQALPQQTASALAAAAQKA-GFDLILCGDGSSDLYAQQVGLLVGE-ILNIPAINGVSKI 149 (256)
T ss_pred CEEEEEecCcccCcCHHHHHHHHHHHHHHh-CCCEEEEcCccccCCCCcHHHHHHH-HhCCCceeeEEEE
Confidence 22222222111 122222 222 3333 39999999986 23333222 344 5555888888875
No 119
>PRK09903 putative transporter YfdV; Provisional
Probab=76.92 E-value=45 Score=35.93 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=64.0
Q ss_pred cCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHH
Q 003979 51 LRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGIT 130 (782)
Q Consensus 51 l~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~ 130 (782)
++-|.+++.++ |+++.- +|.. .|.--.+.++.+++...-+-||..|..+....++.. ++.+...+.-.+
T Consensus 171 ~~nP~iia~~~-gl~~~l--~~i~-------lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAPVL-ATILVL--VGVK-------IPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHHHH-HHHHHH--cCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 45577777654 455542 2221 343456789999999999999999999877666543 344434444443
Q ss_pred -HHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHc
Q 003979 131 -LPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADL 181 (782)
Q Consensus 131 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el 181 (782)
.|++. .....+++.+ ....-...+++...+++...++.+.
T Consensus 240 ~~P~i~-~~~~~~~~l~----------~~~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 240 LMPLAL-LLVGMACHLN----------SEHLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHHH-HHHHHHcCCC----------cHHHHHHHHHHcccHHHHHHHHHHH
Confidence 46544 3223333221 1224455666666666777777654
No 120
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=76.91 E-value=0.58 Score=51.95 Aligned_cols=110 Identities=18% Similarity=0.350 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchH--HHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHHHHH
Q 003979 276 VGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFA--VRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVL 353 (782)
Q Consensus 276 ~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~--~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~ 353 (782)
+.++....+.+.++++..+|-.++|+++.... .+ ++..+..+.+ ..+.+++.....|.++|...+.. .+.....
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~--~~~~~~~ 81 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRR--NWRRALA 81 (380)
T ss_dssp -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHH-HHHHHHHHHHHHHHhhccccccc--ccccccc
Confidence 33444444688889999999999999987632 22 1112344555 67888888889999999998875 3444333
Q ss_pred HHHHHHHHHHHH-HHHHHH---HhCCChHHHHHHHHHHhh
Q 003979 354 VISMACAGKILG-TFVMAL---LCMIPVRESLALGVLMNT 389 (782)
Q Consensus 354 ~v~~~~~~K~i~-~~l~~~---~~~~~~~~~~~lgl~m~~ 389 (782)
..+..++.-++. ++.... ..++++.+++.+|..+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ 121 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSA 121 (380)
T ss_dssp --------------------------------TTHHHHTT
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhc
Confidence 334334444444 444443 478888998888886654
No 121
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=76.15 E-value=15 Score=41.50 Aligned_cols=71 Identities=21% Similarity=0.381 Sum_probs=50.2
Q ss_pred hhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHhhccccee
Q 003979 323 GLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLC--MIPVRESLALGVLMNTKGLVEL 395 (782)
Q Consensus 323 ~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~--~~~~~~~~~lgl~m~~kG~~~l 395 (782)
.+++|+-....|+++|...+.+ .|..+..+.....+...++......+. ++|+..++.+|..+++..-+.+
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~--~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v 136 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRR--VWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAV 136 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhh
Confidence 6778888888999999999876 454444444444444555544444444 8999999999999988765543
No 122
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=75.96 E-value=4.2 Score=40.39 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhh
Q 003979 351 LVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNT 389 (782)
Q Consensus 351 ~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~ 389 (782)
.+.+-+..+++-++++++.+++.+++++|++.++.+++=
T Consensus 58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~Gw 96 (191)
T PF03956_consen 58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGW 96 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcH
Confidence 455666678899999999999999999999998876543
No 123
>COG2985 Predicted permease [General function prediction only]
Probab=74.56 E-value=13 Score=41.54 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=70.3
Q ss_pred CChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhH---HhccchhHHHHHHHH
Q 003979 53 QPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSI---RQNGKSAFKIALAGI 129 (782)
Q Consensus 53 ~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~i~~~~~ 129 (782)
+-..-|.+++|++|| .+|.+-+..+.. |+ .....+.++|+++||--+|++---+.. -..+-..+..+..-.
T Consensus 395 LG~aGGpLivaLiLG--~ig~iGpl~w~m-P~---~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit 468 (544)
T COG2985 395 LGNAGGPLIVALILG--FIGAIGPLTWFM-PP---GALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVT 468 (544)
T ss_pred ecccccHHHHHHHHH--HhcccCceEEEc-Ch---hHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHH
Confidence 445567899999999 467776654443 32 457789999999888888876654433 334444455555566
Q ss_pred HHHHHHHHHHHHHHH-hhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHc
Q 003979 130 TLPFLFGAGVSLFLQ-KAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADL 181 (782)
Q Consensus 130 ~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el 181 (782)
++|.+.+++++.++. ..+ ..++=+++-+.|++|...- ..|.
T Consensus 469 ~vp~i~~~llg~~v~kmn~----------~~l~G~laGs~T~ppaLa~-and~ 510 (544)
T COG2985 469 LVPVIIVFLLGRYVLKMNW----------LLLCGALAGSMTDPPALAF-ANDA 510 (544)
T ss_pred HHHHHHHHHHHHHHHhccH----------HHHhhHHhcCCCChHHHHH-Hhhc
Confidence 677777777776653 222 1233344557799886544 3443
No 124
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=74.48 E-value=7.3 Score=41.47 Aligned_cols=98 Identities=24% Similarity=0.413 Sum_probs=64.7
Q ss_pred HhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec---c
Q 003979 322 SGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV---L 398 (782)
Q Consensus 322 ~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl---i 398 (782)
++++=|+-|..+|..+|++.+... .+. .++-..+=++ ...+++.+...|++.+|+..+|.+=+.-|-.++.+ +
T Consensus 68 ~~l~P~LIF~GIGAmtDFgpllan-P~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~L 143 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLAN-PKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKL 143 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHhC-HHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhh
Confidence 578889999999999999888752 222 1122222222 33467777888999999999999777777666666 6
Q ss_pred ChhhHHHHHHHH----HHHHHhhhhhhcc
Q 003979 399 NDEMFAILVLMA----LFTTFMTTPMRQL 423 (782)
Q Consensus 399 ~~~~~~~lv~~~----~v~t~i~~pl~~~ 423 (782)
.++.+..+.+++ -+.-.+.+|+++.
T Consensus 144 Ap~LlgpIaVaAYsYMaLvPiiqPpimkl 172 (360)
T PF03977_consen 144 APHLLGPIAVAAYSYMALVPIIQPPIMKL 172 (360)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 666555442221 2334556777776
No 125
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=73.59 E-value=29 Score=38.55 Aligned_cols=71 Identities=21% Similarity=0.197 Sum_probs=49.9
Q ss_pred HHHHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhh
Q 003979 318 QDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNT 389 (782)
Q Consensus 318 ~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~ 389 (782)
..+...+-+.+-..-.|++++++.+.. ..|+...+..+..++.-.+....+.+.++.+|-|++.+|...+.
T Consensus 60 Ay~vg~lALaiILfdgG~~T~lss~r~-a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgS 130 (574)
T COG3263 60 AYMVGNLALAIILFDGGFGTQLSSFRV-AAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGS 130 (574)
T ss_pred HHHHHHHHHHHHhhcCccCCcHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhcc
Confidence 333445555566667899999988765 24555455555556666677777888999999999999987644
No 126
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=73.56 E-value=34 Score=37.80 Aligned_cols=97 Identities=15% Similarity=0.250 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhhh--ccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccC
Q 003979 33 QTTLVLLTSHCLAVLIK--PLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELD 110 (782)
Q Consensus 33 ~i~lil~~~~~~~~l~~--rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d 110 (782)
.+.+.+.+++.+...++ .+.+|..++.+++|+++.... ..... .+ -+.+..+.++++.+-+++..+=..++
T Consensus 225 ~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~-~~~~~-~~-----id~~~i~~I~~~sL~~fl~~almsl~ 297 (368)
T PF03616_consen 225 LILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNIL-DKTGK-YK-----IDRKTIDRISGISLDLFLAMALMSLK 297 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHH-HHhCc-cc-----CCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444445555555555 367899999999999997532 11110 00 24577899999999999998888999
Q ss_pred chhHHhccchhHHHHHHHHHHHHHHH
Q 003979 111 LSSIRQNGKSAFKIALAGITLPFLFG 136 (782)
Q Consensus 111 ~~~l~~~~~~~~~i~~~~~~~~~~~~ 136 (782)
+..+.+..-+.+.+-+.+.++..+..
T Consensus 298 l~~l~~~a~Plliil~~q~i~~~~f~ 323 (368)
T PF03616_consen 298 LWVLADYALPLLIILAVQTILMVLFA 323 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777667766654443
No 127
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=73.39 E-value=53 Score=33.28 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHH
Q 003979 87 TPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSL 166 (782)
Q Consensus 87 ~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~ 166 (782)
.+++..+ +|-...-+-.-+-=+.+.+|++++..+.-...+.++.+..+..++.+++.+. .+..+.+-
T Consensus 48 g~~l~~l--LgPatVALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~-----------~~~~Sl~p 114 (215)
T PF04172_consen 48 GDILSFL--LGPATVALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSP-----------EIILSLAP 114 (215)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH-----------HHHHHHHH
Confidence 3444444 3333444444555678899999998887777777777777777777775432 24444444
Q ss_pred hhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHH
Q 003979 167 SITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWIL 206 (782)
Q Consensus 167 s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~l 206 (782)
-+...|+...+-+++|-. ..+.....+++-+++.++
T Consensus 115 kSVTtpiAi~is~~iGG~----~sLta~~VvitGi~Ga~~ 150 (215)
T PF04172_consen 115 KSVTTPIAIEISEQIGGI----PSLTAVFVVITGILGAVL 150 (215)
T ss_pred HHhhHHHHHHHHHHhCCh----HHHHHHHHHHHhhHHHHh
Confidence 344457777777777622 234444444455444443
No 128
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=71.35 E-value=34 Score=33.24 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=32.1
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCC--CeEEEEEEeeec
Q 003979 613 RVCIIFFGGPDDRRALDLGGRMAENP--GGNVTLVRFIGQ 650 (782)
Q Consensus 613 ~Ilv~~~g~~~~~~al~~a~~la~~~--~~~l~vl~v~~~ 650 (782)
||+|.+.||.|+--.+.++.+..++. +.+++.+++...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 58999999999999999999887665 678888888753
No 129
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=70.16 E-value=20 Score=38.34 Aligned_cols=79 Identities=24% Similarity=0.441 Sum_probs=44.2
Q ss_pred hhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHH
Q 003979 55 KVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFL 134 (782)
Q Consensus 55 ~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~ 134 (782)
.++|-++.|.+-||.+...+++++..+|. =-+.++|..+|++-- ++++..++..+.+...+++.|.+
T Consensus 182 LLlGgliIG~~~g~~g~~~i~pf~~~lF~------------G~L~lFLLeMGl~A~-~rL~~l~~~g~~li~Fgi~~Pli 248 (327)
T PF05982_consen 182 LLLGGLIIGFLAGPEGVESIKPFFVDLFK------------GVLCLFLLEMGLVAA-RRLRDLRKVGWFLIAFGILMPLI 248 (327)
T ss_pred HHHHHHHHhheeCccchhhccchhhccHH------------HHHHHHHHHhhHHHH-HhhHHHHhhhHHHHHHHHHHHHH
Confidence 34566667777777766666665443332 235667778887542 23333334444455556667765
Q ss_pred ---HHHHHHHHHHhh
Q 003979 135 ---FGAGVSLFLQKA 146 (782)
Q Consensus 135 ---~~~~~~~~l~~~ 146 (782)
++..++++++.+
T Consensus 249 ~a~ig~~lg~~~gls 263 (327)
T PF05982_consen 249 NALIGIGLGWLLGLS 263 (327)
T ss_pred HHHHHHHHHHHhCCC
Confidence 445555555544
No 130
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=69.68 E-value=16 Score=38.11 Aligned_cols=110 Identities=17% Similarity=0.146 Sum_probs=66.8
Q ss_pred EeccCCcchHHHHHHHHHHhc-CCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHHHHh-c
Q 003979 616 IIFFGGPDDRRALDLGGRMAE-NPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDFMRK-W 693 (782)
Q Consensus 616 v~~~g~~~~~~al~~a~~la~-~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 693 (782)
+|..=.|.|+-|++.|.|+.+ ..+.+++++++=++. +++.+.+...+ .
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~------------------------------a~~~lr~aLAmGa 80 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ------------------------------AEEALREALAMGA 80 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchh------------------------------hHHHHHHHHhcCC
Confidence 466667999999999999999 699999999997643 22333333333 2
Q ss_pred CCcEEEEEEEe--cChHHHHHHhhc---ccCCcEEEEccCC--CCcccccc-ccccCCCCcccccchhhhh
Q 003979 694 GGSVEYEEKVM--ANVKDEVLKIGQ---IRDYELVVVGKGR--FPSTIEAE-LADHQPENVGLGLIGNILA 756 (782)
Q Consensus 694 ~~~v~~~e~~v--~~g~~~~~~~~~---~~~~DLivvG~~g--~~~~~~~G-L~~~w~e~~~LG~vgd~l~ 756 (782)
++-+...+... .++..+-..+++ ..++|||+.|+.- .++.+.-. +.+ |-..|....+.+.-.
T Consensus 81 Draili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe-~Lg~P~~t~v~~i~~ 150 (260)
T COG2086 81 DRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAE-LLGWPQVTYVSKIEI 150 (260)
T ss_pred CeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHH-HhCCceeeeEEEEEE
Confidence 22222222111 223333333333 3449999999997 34433322 445 444488888777664
No 131
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=69.65 E-value=95 Score=31.69 Aligned_cols=103 Identities=12% Similarity=0.156 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHH
Q 003979 87 TPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSL 166 (782)
Q Consensus 87 ~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~ 166 (782)
.+++..+ +|-+..-|..-+--+.+.+|++++..+.-...+.++.+..+..++.+++.+. .+..+..-
T Consensus 58 ~~~l~~l--LgPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~-----------~i~~Sl~p 124 (226)
T TIGR00659 58 GGVINDL--LGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGP-----------EIIASLLP 124 (226)
T ss_pred hHHHHHh--hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH-----------HHHHHhhh
Confidence 3444443 4444444555556788999999988887777777777777777777765432 13333333
Q ss_pred hhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHH
Q 003979 167 SITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWIL 206 (782)
Q Consensus 167 s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~l 206 (782)
-+...|+.+.+-+++|- .-.++....+++-+++.++
T Consensus 125 kSvTtpiAm~vs~~iGG----~~sLta~~vvitGi~Ga~~ 160 (226)
T TIGR00659 125 KSVTTPIAMHVSEMIGG----IPAVTAVFVILTGLLGTVF 160 (226)
T ss_pred HHhhHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHH
Confidence 23335677777666662 2334444444555544444
No 132
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=66.38 E-value=36 Score=36.17 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=33.4
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003979 612 KRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQ 650 (782)
Q Consensus 612 ~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~ 650 (782)
++|+|++.||+|+--++..++++.++ .++.+++|...
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~ 58 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHG 58 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCC
Confidence 58999999999999999999999887 88999999764
No 133
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=66.12 E-value=5.6 Score=41.23 Aligned_cols=97 Identities=21% Similarity=0.314 Sum_probs=64.2
Q ss_pred HhhhHHHHHHHhhcccccccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec---
Q 003979 322 SGLLLPLYFASSGLKTDVAKIRGI-EAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV--- 397 (782)
Q Consensus 322 ~~~f~plfF~~~G~~id~~~l~~~-~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl--- 397 (782)
++++=++.|..+|..+|++.+... .+.. +-..+=++ +..+++.+...|+..+|+..+|++=+.-|-.++.+
T Consensus 83 ~~i~PllIFmGvGAmTDFgpllanPktll----LGaAAQ~G-IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~ 157 (375)
T COG1883 83 SGIFPLLIFMGVGAMTDFGPLLANPKTLL----LGAAAQFG-IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNK 157 (375)
T ss_pred cCcccHHHHhccchhcccchhhcCcHHHH----hhhHHHhc-hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEeccc
Confidence 578888899999999999888642 1221 11112222 23456677888999999999999878888888777
Q ss_pred cChhhHHHHHHHH----HHHHHhhhhhhcc
Q 003979 398 LNDEMFAILVLMA----LFTTFMTTPMRQL 423 (782)
Q Consensus 398 i~~~~~~~lv~~~----~v~t~i~~pl~~~ 423 (782)
+.++....+.++. .+.-++-+|+.+.
T Consensus 158 LAP~Ll~~iAvAAYSYMALVPiIQPpimka 187 (375)
T COG1883 158 LAPELLGAIAVAAYSYMALVPIIQPPIMKA 187 (375)
T ss_pred cCHHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence 6666666553321 2234556666665
No 134
>PRK06801 hypothetical protein; Provisional
Probab=65.68 E-value=24 Score=37.45 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=72.0
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFG 596 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~ 596 (782)
++..|-.+-..+ ..+...|++.|++.++..|+.-..+.....+ -..+....+...++++.||.+--|++..
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~-------~~~~~~~~~~~a~~~~vpV~lHlDH~~~ 86 (286)
T PRK06801 16 HGYALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEVHFKYIS-------LESLVEAVKFEAARHDIPVVLNLDHGLH 86 (286)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcchhhcCC-------HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 444555555444 5789999999999999999998766543222 1256777889999999999998888753
Q ss_pred CCCCCcccCccccccceEEEeccCCcch-HHHHHHHHHH---hcCCCeEE
Q 003979 597 FGSDQTVAEPAATVLKRVCIIFFGGPDD-RRALDLGGRM---AENPGGNV 642 (782)
Q Consensus 597 ~~~~~~~~~~~~~~~~~Ilv~~~g~~~~-~~al~~a~~l---a~~~~~~l 642 (782)
. +..... .+..+..|. +|||..+ +|-++..+++ |+..|+.+
T Consensus 87 ~--e~i~~A-i~~GftSVm--~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 87 F--EAVVRA-LRLGFSSVM--FDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred H--HHHHHH-HHhCCcEEE--EcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 1 000000 001234443 4887655 6777666555 66777643
No 135
>PRK12342 hypothetical protein; Provisional
Probab=65.42 E-value=25 Score=36.63 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=28.8
Q ss_pred EeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003979 616 IIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQ 650 (782)
Q Consensus 616 v~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~ 650 (782)
+++.=+|.|+.|++.|.|+. ..|.+++++.+-++
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~ 62 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLA-TDGDEIAALTVGGS 62 (254)
T ss_pred CCccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCC
Confidence 35556799999999999999 57999999999764
No 136
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=64.16 E-value=1.3e+02 Score=32.86 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=55.3
Q ss_pred cHHHHHHH-HHHHHHHHHHHHHhhhccCCChh--HHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHH
Q 003979 26 AFPLLIIQ-TTLVLLTSHCLAVLIKPLRQPKV--IAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFL 102 (782)
Q Consensus 26 ~~~~~l~~-i~lil~~~~~~~~l~~rl~~P~i--v~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~ll 102 (782)
+++..... +.+.+.++.+.+.+.|++|+|.. .+-++.|.++.-.+ +. ..+.-.-+..++..++.
T Consensus 181 ~~~~~~~~~~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~-~~------------~~~lP~wl~~va~~~iG 247 (352)
T COG3180 181 WLPPVDWLILLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGG-GI------------TIQLPAWLLAVAQALIG 247 (352)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhccc-ce------------eeeCCHHHHHHHHHHHH
Confidence 33333334 66777778888899999998853 34444444433211 11 11223345567788888
Q ss_pred HHHhhccCchhHHhccchhHHHHH
Q 003979 103 FLVGLELDLSSIRQNGKSAFKIAL 126 (782)
Q Consensus 103 F~~Gle~d~~~l~~~~~~~~~i~~ 126 (782)
-.+|.++|...+++..|....+.+
T Consensus 248 ~~IG~~f~~~~l~~~~r~~~~~~v 271 (352)
T COG3180 248 ALIGSRFDRSILREAKRLLPAILV 271 (352)
T ss_pred HHHcccccHHHHHHhHhhcchHHH
Confidence 999999999999887776654443
No 137
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=62.92 E-value=2.1e+02 Score=30.41 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=38.8
Q ss_pred hhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccc
Q 003979 48 IKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGK 119 (782)
Q Consensus 48 ~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~ 119 (782)
.+-++...-.|-.++|+++..+-+.. ...+..+ .+.+.-.+++...+|+-.|+..+-++..
T Consensus 243 ~~LfgvsfaLGAffaGMvL~eselsh--raa~~sl---------pLrdaFaVlFFvsVGmlf~P~~l~~~pl 303 (408)
T COG4651 243 AELFGVSFALGAFFAGMVLAESELSH--RAAEDSL---------PLRDAFAVLFFVSVGMLFDPMILIQQPL 303 (408)
T ss_pred ceeeccchhHHHHHHHHHhcchhhhH--HHHHhcc---------CHHHHHHHHHHHHhhhhcCcHHhhcchH
Confidence 34467777778888888887654332 1112222 2445556667778999999988876654
No 138
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=61.75 E-value=18 Score=39.12 Aligned_cols=102 Identities=23% Similarity=0.369 Sum_probs=65.2
Q ss_pred HHHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec-
Q 003979 319 DFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV- 397 (782)
Q Consensus 319 ~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl- 397 (782)
.+.++++=|+-|..+|..+|++.+... .+.. ++.-..+=++ ...+++.+..+|++.+|+-.+|++=+.-|-.++.+
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllan-P~~~-ll~gaaAQ~G-iF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s 177 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILAR-PWAS-ITVALFAEMG-TFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFAS 177 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhC-hHHH-HHHHHHHHhh-HHHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHH
Confidence 344678899999999999999888752 2211 1101222222 23455667778999999999999777777666665
Q ss_pred --cChhhHHHHHHHH----HHHHHhhhhhhcc
Q 003979 398 --LNDEMFAILVLMA----LFTTFMTTPMRQL 423 (782)
Q Consensus 398 --i~~~~~~~lv~~~----~v~t~i~~pl~~~ 423 (782)
+.++.+..+.+++ -+.-.+-+|+++.
T Consensus 178 ~kLAp~Llg~IaVAAYsYMaLVPiiqPpimkl 209 (399)
T TIGR03136 178 LILAKDLFVPISIIAYLYLSLTYAGYPYLIKL 209 (399)
T ss_pred HhhhhHhHHHHHHHHHHHHHHHhcccchHHHh
Confidence 5555555442221 2334566777777
No 139
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=60.80 E-value=31 Score=33.16 Aligned_cols=27 Identities=41% Similarity=0.487 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHHhcCCCeEEEEEEee
Q 003979 622 PDDRRALDLGGRMAENPGGNVTLVRFI 648 (782)
Q Consensus 622 ~~~~~al~~a~~la~~~~~~l~vl~v~ 648 (782)
+.+.|+++.|+++++..|.+++++-+-
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G 41 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLG 41 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 788999999999999999999999876
No 140
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=60.24 E-value=5.6 Score=42.73 Aligned_cols=116 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--HhCCChHHHHHHHHHHhhcccceeec
Q 003979 320 FVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMAL--LCMIPVRESLALGVLMNTKGLVELIV 397 (782)
Q Consensus 320 ~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~--~~~~~~~~~~~lgl~m~~kG~~~lvl 397 (782)
+.++++=|+-|..+|..+|++.+.......+.....=..++.-+++...... +.|++.+|+-.+|++=+.-|-.++.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv 210 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL 210 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Q ss_pred -----------cChhhHHHHHHHHHHHHHhhhhhhcc---cccc--------CCcccceEEEEe
Q 003979 398 -----------LNDEMFAILVLMALFTTFMTTPMRQL---PAAK--------DSKDEFRIQACV 439 (782)
Q Consensus 398 -----------i~~~~~~~lv~~~~v~t~i~~pl~~~---~~~~--------~~~~e~rILvpv 439 (782)
+.-..|+-+ -+.-++-+|+++. .++| +-.+..||+-|+
T Consensus 211 sskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPi 270 (433)
T PRK15475 211 SGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTETERKIRMVQLRTVSKREKILFPV 270 (433)
T ss_pred HhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHH
No 141
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=59.77 E-value=30 Score=33.09 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=53.0
Q ss_pred hhHHHHHHHHhcCCC---CchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccch--hh-HHHHHHHHHHHHHHHHHH
Q 003979 292 AIFGAFVFGLTIPKG---GEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGI--EA-WGLLVLVISMACAGKILG 365 (782)
Q Consensus 292 ~~lgaf~aGl~~~~~---~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~--~~-~~~~~~~v~~~~~~K~i~ 365 (782)
..-|+++.|+++.+. .|....+......+.+++.+-+|...+|++.-...+... .. +.......++.++.-.+.
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~ 102 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLV 102 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 355777888877643 233344445556666788888999999999975444321 12 222222233344444666
Q ss_pred HHHHHHHhCCChH
Q 003979 366 TFVMALLCMIPVR 378 (782)
Q Consensus 366 ~~l~~~~~~~~~~ 378 (782)
.++..+++|+++.
T Consensus 103 ~~~~~~~~~~~~~ 115 (154)
T TIGR01625 103 AVALIKLLRINYA 115 (154)
T ss_pred HHHHHHHhCCCHH
Confidence 7777788999864
No 142
>PRK10711 hypothetical protein; Provisional
Probab=59.70 E-value=2e+02 Score=29.46 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHH
Q 003979 87 TPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSL 166 (782)
Q Consensus 87 ~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~ 166 (782)
.+++..+ +|-+...|..-+--+.+.+|++++..+.-...|.++.+..+..++.+++.+. .+..+..-
T Consensus 59 ~~~l~~l--LgPAtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~-----------~~~~Sl~p 125 (231)
T PRK10711 59 SEVLNDL--LQPAVVALAFPLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATP-----------EIAASILP 125 (231)
T ss_pred cHHHHhh--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH-----------HHHHHHhh
Confidence 3445444 4444455555666788999999998887767777777777777777775432 13333333
Q ss_pred hhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHH
Q 003979 167 SITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILL 207 (782)
Q Consensus 167 s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll 207 (782)
-+...|+.+.+-++.|-. -.++....+++-+++.++-
T Consensus 126 kSVTtPIAm~is~~iGG~----~sLta~~ViitGi~Ga~~g 162 (231)
T PRK10711 126 KSVTTPIAMAVGGSIGGI----PAISAVCVIFVGILGAVFG 162 (231)
T ss_pred hhhhHHHHHHHHHHhCCc----HHHHHHHHHHHHHHHHHHH
Confidence 233356777776666622 2344444444544444443
No 143
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=59.16 E-value=85 Score=34.22 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=56.5
Q ss_pred HHHHHhhhcc-CCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhc-cCchhHHhccc
Q 003979 42 HCLAVLIKPL-RQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLE-LDLSSIRQNGK 119 (782)
Q Consensus 42 ~~~~~l~~rl-~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle-~d~~~l~~~~~ 119 (782)
+.++.+++.+ ++|..+-.|+.|+++.- +|..++-.. .....+-+++..--...+++-.|+. +|++++-+...
T Consensus 192 y~~g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~----~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t 265 (347)
T TIGR00783 192 FMAGGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIE----EGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALS 265 (347)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhc
Confidence 3444445544 68999999999999984 454432100 0011222234333444455557886 89999988773
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003979 120 -SAFKIALAGITLPFLFGAGVSLFLQKA 146 (782)
Q Consensus 120 -~~~~i~~~~~~~~~~~~~~~~~~l~~~ 146 (782)
+-+.+.+.+++--.+.++.++.++++.
T Consensus 266 ~~~vviiv~~Vlg~ii~s~lvGKllG~Y 293 (347)
T TIGR00783 266 WQFVVICLSVVVAMILGGAFLGKLMGMY 293 (347)
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 334444444444445556667777544
No 144
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=59.04 E-value=91 Score=38.10 Aligned_cols=93 Identities=18% Similarity=0.224 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccH--
Q 003979 94 ASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAF-- 171 (782)
Q Consensus 94 ~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~-- 171 (782)
.++-+-++....|++.|+..+.+ +.............-++.+.+.+.+...++ ..++.+|.+++.=+.
T Consensus 312 ~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~---------~~~l~l~~lm~~kgl~e 381 (769)
T KOG1650|consen 312 SGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPL---------RDSLALGLLMSTKGLVE 381 (769)
T ss_pred HHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCch---------hHHHHHHHHHHhhhHHH
Confidence 34566777788999999999988 222222222222233344444444433332 457888888876443
Q ss_pred HHHHHHHHHccccCCchHHHHHHHH
Q 003979 172 PVLARILADLKLLTTQVGQTAMAAA 196 (782)
Q Consensus 172 ~vv~~il~el~l~~s~~g~l~l~~a 196 (782)
-++...-.|.|..+++.-.+.+-.+
T Consensus 382 l~~~~~~~~~~~~~~~~f~~~vl~a 406 (769)
T KOG1650|consen 382 LIVLNTGLDRKILSDEGFTVMVLMA 406 (769)
T ss_pred HHHHHHHhhcCCcccchHHHHHHHH
Confidence 2334455666666655544433333
No 145
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=58.94 E-value=6.1 Score=42.49 Aligned_cols=116 Identities=15% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--HhCCChHHHHHHHHHHhhcccceeec
Q 003979 320 FVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMAL--LCMIPVRESLALGVLMNTKGLVELIV 397 (782)
Q Consensus 320 ~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~--~~~~~~~~~~~lgl~m~~kG~~~lvl 397 (782)
+.++++=|+-|..+|..+|++.+.......+.....=..++.-+++...... +.|++.+|+-.+|++=+.-|-.++.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv 210 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL 210 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Q ss_pred -----------cChhhHHHHHHHHHHHHHhhhhhhcc---cccc--------CCcccceEEEEe
Q 003979 398 -----------LNDEMFAILVLMALFTTFMTTPMRQL---PAAK--------DSKDEFRIQACV 439 (782)
Q Consensus 398 -----------i~~~~~~~lv~~~~v~t~i~~pl~~~---~~~~--------~~~~e~rILvpv 439 (782)
+.-..|+-+ -+.-++-+|+++. .++| +-.+..||+-|+
T Consensus 211 sskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPi 270 (433)
T PRK15476 211 SGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPV 270 (433)
T ss_pred HhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHH
No 146
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=58.92 E-value=6.1 Score=42.49 Aligned_cols=116 Identities=15% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--HhCCChHHHHHHHHHHhhcccceeec
Q 003979 320 FVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMAL--LCMIPVRESLALGVLMNTKGLVELIV 397 (782)
Q Consensus 320 ~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~--~~~~~~~~~~~lgl~m~~kG~~~lvl 397 (782)
+.++++=|+-|..+|..+|++.+.......+.....=..++.-+++...... +.|++.+|+-.+|++=+.-|-.++.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfv 210 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYL 210 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHh
Q ss_pred -----------cChhhHHHHHHHHHHHHHhhhhhhcc---cccc--------CCcccceEEEEe
Q 003979 398 -----------LNDEMFAILVLMALFTTFMTTPMRQL---PAAK--------DSKDEFRIQACV 439 (782)
Q Consensus 398 -----------i~~~~~~~lv~~~~v~t~i~~pl~~~---~~~~--------~~~~e~rILvpv 439 (782)
+.-..|+-+ -+.-++-+|+++. .++| +-.+..||+-|+
T Consensus 211 sskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPi 270 (433)
T PRK15477 211 SGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPV 270 (433)
T ss_pred HhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHH
No 147
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=58.83 E-value=2.7e+02 Score=30.16 Aligned_cols=253 Identities=17% Similarity=0.173 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccC-CchhhhcccCCCCchHHHHHHHHHH------HHHHHHHH
Q 003979 33 QTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALG-RNKEYLHLVFPSWSTPILESLASVG------LLFFLFLV 105 (782)
Q Consensus 33 ~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg-~~~~~~~~~fp~~~~~~l~~l~~lg------l~~llF~~ 105 (782)
++..+.+...+.+.-.||---|.+.-.|-.|+++.+.-+. ..+... .......+..+-+.| -.++++-+
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~~----~~~~~g~l~~~~~~gi~~~l~P~LIF~GI 79 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQPV----GGGEIGGLQPIYYFGISNGLFPPLIFMGI 79 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhccccc----ccCCCChHHHHHHHhhhcchhhHHHHHHH
Confidence 4555555666666777777789999999999999863321 111000 001112333333333 23466678
Q ss_pred hhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccC
Q 003979 106 GLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLT 185 (782)
Q Consensus 106 Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~ 185 (782)
|--+|++-+-.+.|..+.-+..++-+ ..++..+.+++++. ..+..+|++-..=.|..+.- ..++.+
T Consensus 80 GAmtDFgpllanP~~~llGaaAQ~Gi--f~t~~~A~~lGf~~---------~eAAsIgIIGgADGPtsIf~---s~~LAp 145 (360)
T PF03977_consen 80 GAMTDFGPLLANPKTLLLGAAAQFGI--FATFLGAILLGFTP---------KEAASIGIIGGADGPTSIFV---SSKLAP 145 (360)
T ss_pred hHHHhhHHHHhCHHHHHHHHHHHHhH--HHHHHHHHHhCCCH---------HHhhHhhhcccCCCcHHHHH---HHhhhH
Confidence 88999999999998855433333321 22233334445443 34555666554433322211 122222
Q ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh--
Q 003979 186 TQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVA----RQC-- 259 (782)
Q Consensus 186 s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~-- 259 (782)
.-+|.+++++ + .+....-.+-+|+++-+. |+.
T Consensus 146 ~LlgpIaVaA--------------------Y----------------------sYMaLvPiiqPpimklLttkkeR~I~M 183 (360)
T PF03977_consen 146 HLLGPIAVAA--------------------Y----------------------SYMALVPIIQPPIMKLLTTKKERKIRM 183 (360)
T ss_pred HHHHHHHHHH--------------------H----------------------HHHHHHhhhhhHHHHHhcCHHHHhccC
Confidence 2222211110 0 011122223344444332 221
Q ss_pred cCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhccccc
Q 003979 260 SSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDV 339 (782)
Q Consensus 260 ~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~ 339 (782)
.+.++.++..-+.+-+....+++.+. =.-.+++|.+++|-++.+ ....+++.+..+.-...+..-+.=..+|...+-
T Consensus 184 ~~~r~Vsk~ekiiFpivv~~~~~ll~--P~a~pLig~Lm~Gnl~rE-sgv~~rLs~taqn~l~nivTi~LGl~vGat~~a 260 (360)
T PF03977_consen 184 KQLRPVSKTEKIIFPIVVTILVGLLL--PSAAPLIGMLMFGNLLRE-SGVVERLSKTAQNELMNIVTIFLGLTVGATMTA 260 (360)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 01122223333444444444444331 134689999999999986 334444444433332333333334778888887
Q ss_pred ccccchhhH
Q 003979 340 AKIRGIEAW 348 (782)
Q Consensus 340 ~~l~~~~~~ 348 (782)
+.+.+..+.
T Consensus 261 ~~fL~~~tl 269 (360)
T PF03977_consen 261 ETFLNPQTL 269 (360)
T ss_pred HHhcCHHHH
Confidence 777664443
No 148
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=57.36 E-value=76 Score=34.62 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=70.7
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCC-CceEEEecCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAP-CSVAVLVDRGF 595 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ap-c~V~i~v~r~~ 595 (782)
++..|-.+-..+ ..+.+.|++.|++.++.+|+.-+.+.....+ ...+..+.+...++++ +||.+--|++.
T Consensus 16 ~~yAVgAfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~g-------~~~~~~~~~~~a~~~~~VPValHLDHg~ 86 (347)
T PRK09196 16 HGYGVPAFNVNN--LEQVQAIMEAADETDSPVILQASAGARKYAG-------EPFLRHLILAAVEEYPHIPVVMHQDHGN 86 (347)
T ss_pred cCceEEEeeeCC--HHHHHHHHHHHHHhCCCEEEECCccHhhhCC-------HHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 444555555544 5889999999999999999998766533222 1256777788888997 99999888875
Q ss_pred CCCCCCcccCccccccceEEEeccCCcc--------hHHHH---HHHHHHhcCCCeEEE
Q 003979 596 GFGSDQTVAEPAATVLKRVCIIFFGGPD--------DRRAL---DLGGRMAENPGGNVT 643 (782)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~Ilv~~~g~~~--------~~~al---~~a~~la~~~~~~l~ 643 (782)
.+ +..... -+..+.. |-+|||.. -+|-+ +...++|...|+.+.
T Consensus 87 ~~--e~i~~a-i~~GftS--VMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE 140 (347)
T PRK09196 87 SP--ATCQRA-IQLGFTS--VMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE 140 (347)
T ss_pred CH--HHHHHH-HHcCCCE--EEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 32 110000 0012333 45789853 34444 445556666676554
No 149
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=56.88 E-value=18 Score=40.96 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCccEEEec---ccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCCCCCCCcccCccccc
Q 003979 534 HEDIFHVAEAKRVAMIVLP---FHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQTVAEPAATV 610 (782)
Q Consensus 534 ~~~I~~~a~~~~~dlIv~g---~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~~~~~~~~~~~~~~~ 610 (782)
.++||++|+++++|+|++| ||....+...+ +..++.+=++-+-.-||..=++-|.+..|+......-+--..
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L-----~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~Dp 115 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKTL-----HRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDP 115 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHHH-----HHHHHHHHHHccCCCceeeEEecccceeccccccceecccCC
Confidence 7899999999999999999 67765443221 223444445667778999999888865443222221100002
Q ss_pred cceEEEecc
Q 003979 611 LKRVCIIFF 619 (782)
Q Consensus 611 ~~~Ilv~~~ 619 (782)
.-+|-+|++
T Consensus 116 NlNIsIPVF 124 (646)
T KOG2310|consen 116 NLNISIPVF 124 (646)
T ss_pred CcceeeeeE
Confidence 347877776
No 150
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=55.02 E-value=1.2e+02 Score=33.06 Aligned_cols=91 Identities=9% Similarity=0.021 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccC-CCc-chh------hhcccchHH
Q 003979 503 HDQIVTSFEAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRR-EGE-EEI------ARVCHGWRE 574 (782)
Q Consensus 503 ~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~-~~~-~~~------~~~~~~~~~ 574 (782)
.++..+.++...+ ++..|-.+-... ..+.+.|++.|++.++..|+.-+.+.... .|. ++. -+....+..
T Consensus 6 ~~~~k~~L~~A~~-~~yAV~AfNv~n--~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (350)
T PRK09197 6 GEDYQEMFDRAKE-NGFALPAVNVVG--TDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAK 82 (350)
T ss_pred HHHHHHHHHHHHH-CCceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHH
Confidence 3555555555444 344444555444 57899999999999999999887654322 110 000 000001556
Q ss_pred HHHHHhhcCCCceEEEecCCCC
Q 003979 575 VNRTVLQNAPCSVAVLVDRGFG 596 (782)
Q Consensus 575 v~~~Vl~~apc~V~i~v~r~~~ 596 (782)
..+...+++.+||.+--|++..
T Consensus 83 ~v~~~A~~~~VPValHLDHg~~ 104 (350)
T PRK09197 83 HVHEVAEHYGVPVILHTDHCAK 104 (350)
T ss_pred HHHHHHHHCCCCEEEECCCCCC
Confidence 7788899999999998888754
No 151
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=54.84 E-value=3.2e+02 Score=29.92 Aligned_cols=258 Identities=10% Similarity=0.062 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCch-hhhcc--cCC----C------CchHHHHHHHHHHH
Q 003979 32 IQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNK-EYLHL--VFP----S------WSTPILESLASVGL 98 (782)
Q Consensus 32 ~~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~-~~~~~--~fp----~------~~~~~l~~l~~lgl 98 (782)
-++..+++...+.+.-.+|--=|.+.-.|-.|+++.+.-+...+ ...+. +-| + .+...++.+-+.|+
T Consensus 23 ~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~gi 102 (399)
T TIGR03136 23 TRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNFTF 102 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHHHH
Confidence 35555555555556666666779999999999999864321000 00000 000 0 01134443434332
Q ss_pred ------HHHHHHHhhccCchhHHhccchhHHH-HHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccH
Q 003979 99 ------LFFLFLVGLELDLSSIRQNGKSAFKI-ALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAF 171 (782)
Q Consensus 99 ------~~llF~~Gle~d~~~l~~~~~~~~~i-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~ 171 (782)
.++.+-+|-=+|++-+-.+.|..+.. +..++-+ ..++..+..++++. ..+-.+|++-..=.|
T Consensus 103 ~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~Gi--F~t~~~A~~lGF~~---------~eAAsIgIIGgADGP 171 (399)
T TIGR03136 103 SNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGT--FATLVIGYYCGLTP---------GEAAAVGTIGGADGP 171 (399)
T ss_pred hcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhH--HHHHHHHHHcCCCH---------HHhhHHhhcccCCcc
Confidence 34556678889999999999888763 3333221 11222233444433 345556665544333
Q ss_pred HHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003979 172 PVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPI 251 (782)
Q Consensus 172 ~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 251 (782)
..+.- ..|+.+.-+|.+++++ + .+....-.+-+|+
T Consensus 172 TaIf~---s~kLAp~Llg~IaVAA--------------------Y----------------------sYMaLVPiiqPpi 206 (399)
T TIGR03136 172 MVLFA---SLILAKDLFVPISIIA--------------------Y----------------------LYLSLTYAGYPYL 206 (399)
T ss_pred HHHHH---HHhhhhHhHHHHHHHH--------------------H----------------------HHHHHHhcccchH
Confidence 22211 1232222222221110 0 0111222233455
Q ss_pred HHHHHHHh------c-CCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhh
Q 003979 252 MDWVARQC------S-SDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGL 324 (782)
Q Consensus 252 ~~~~~~~~------~-~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~ 324 (782)
++++..+. . +.++.++..-+.+-+..+.+++.+. =.-.+++|.+.+|-.+.+ ... +++.+..+.-....
T Consensus 207 mklLttkkER~I~M~~~~r~VSk~eKilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrE-sGv-~rLs~taqn~l~ni 282 (399)
T TIGR03136 207 IKLLVPKKYRGLEVEMEFPDVSQRAKFVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKE-AQI-EPYQNLLEKTLTYG 282 (399)
T ss_pred HHhhcCHHHHcccCccCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHH-hCc-HHHHHHHHHHHHHH
Confidence 55443221 0 1112222223445454544444431 134689999999999986 333 55555444333333
Q ss_pred hHHHHHHHhhcccccccccchhhHH
Q 003979 325 LLPLYFASSGLKTDVAKIRGIEAWG 349 (782)
Q Consensus 325 f~plfF~~~G~~id~~~l~~~~~~~ 349 (782)
..-+.=..+|.+.+-..+.+..+..
T Consensus 283 vTifLGl~vG~t~~A~~FL~~~tl~ 307 (399)
T TIGR03136 283 STLFLGLVLGVLCEASTLLDPRVSI 307 (399)
T ss_pred HHHHHHHHhhhhccHHhhCChHHHH
Confidence 3334447888888877777654443
No 152
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=54.74 E-value=3e+02 Score=29.61 Aligned_cols=85 Identities=21% Similarity=0.165 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHH------HHHHHHHHhhccC
Q 003979 37 VLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVG------LLFFLFLVGLELD 110 (782)
Q Consensus 37 il~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lg------l~~llF~~Gle~d 110 (782)
+++...+.+.-.+|---|.+.-.|-.|+++.+.=.+-. ..+.+ ...++.+-+.| -.++.+-+|.-+|
T Consensus 6 i~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~----g~~~~---gg~l~~~~~~gi~~~l~P~LIFlGIGAmtD 78 (354)
T TIGR01109 6 LLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGL----GLTAE---GGILALFYKVGIGSGIAPLLIFMGIGALTD 78 (354)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcccc----ccccC---CchHHHHHHHHHhcchHHHHHHHhccHHhh
Confidence 34444455555666667999999999999985311100 01111 12333333333 2345566788999
Q ss_pred chhHHhccchhHHHHHHH
Q 003979 111 LSSIRQNGKSAFKIALAG 128 (782)
Q Consensus 111 ~~~l~~~~~~~~~i~~~~ 128 (782)
++-+-.+.|..+.-+..+
T Consensus 79 FgpllanP~~~llGaaAQ 96 (354)
T TIGR01109 79 FGPLLANPRTLLLGAAAQ 96 (354)
T ss_pred hHHHHhChHHHHHHHHHH
Confidence 999999997444333333
No 153
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=53.75 E-value=30 Score=38.31 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHH-HhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003979 294 FGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFA-SSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALL 372 (782)
Q Consensus 294 lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~-~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~ 372 (782)
+...++|....+..-+.++-.+.+..++..+++|.+.+ .++-..+...+.+ ++.+.+..++..+.-++..++..++
T Consensus 10 ~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (385)
T PF03547_consen 10 FLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS---LWFIPVFAFIIFILGLLLGFLLSRL 86 (385)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555545566777888999999999998744 4444344443433 3333333333334445556666777
Q ss_pred hCCChHHH
Q 003979 373 CMIPVRES 380 (782)
Q Consensus 373 ~~~~~~~~ 380 (782)
++.+.+++
T Consensus 87 ~~~~~~~~ 94 (385)
T PF03547_consen 87 FRLPKEWR 94 (385)
T ss_pred cCCCcccc
Confidence 77776654
No 154
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=51.85 E-value=1.9e+02 Score=31.97 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHhhhc--cCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003979 31 IIQTTLVLLTSHCLAVLIKP--LRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLE 108 (782)
Q Consensus 31 l~~i~lil~~~~~~~~l~~r--l~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle 108 (782)
+..+++.+.+++....+++. +.+|..++.+++|+++.... +...+ +.-..+..+.++++++.+++=.+=+.
T Consensus 224 ~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~----~~~~~---~~v~~~~v~~ig~vsL~lflamALmS 296 (404)
T COG0786 224 LAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNIL----DLLKK---YRVFRRAVDVIGNVSLSLFLAMALMS 296 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHH----HHhcc---ccccHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444555566666666664 56999999999999998531 11111 11235678999999999998888788
Q ss_pred cCchhHHhccchhHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 003979 109 LDLSSIRQNGKSAFKIALAGITLPFLFG-AGVSLFLQKA 146 (782)
Q Consensus 109 ~d~~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~ 146 (782)
+.+-++-..+-..+.+-..+.++..+.. ++.+..++.+
T Consensus 297 lkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~ 335 (404)
T COG0786 297 LKLWELADLALPLLVILAVQTIVMALFAIFVTFRLMGKN 335 (404)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 8888888777777766666665543332 3333444433
No 155
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=51.74 E-value=1.7e+02 Score=27.57 Aligned_cols=104 Identities=16% Similarity=0.063 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCh---hHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHH
Q 003979 28 PLLIIQTTLVLLTSHCLAVLIKPLRQPK---VIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFL 104 (782)
Q Consensus 28 ~~~l~~i~lil~~~~~~~~l~~rl~~P~---iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~ 104 (782)
..++.|+++++.+..+...+.+-+++|- ++|.++-=+.|. ++...+ +.+ ....--.+.++++.|+=--
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~---~~~vk~--~~v----~~~a~~LL~~m~LfFVPag 77 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLC---TKVVKL--EQV----ESLGTALTNNIGFLFVPSG 77 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCCcCH--HHH----HHHHHHHHHHHHHHHhhhH
Confidence 3467788888888888878777777653 344433222221 222211 000 0011123455555555556
Q ss_pred HhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHH
Q 003979 105 VGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVS 140 (782)
Q Consensus 105 ~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 140 (782)
+|+=..++.+++++...+...+.+.++.++++..+.
T Consensus 78 VGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~ 113 (141)
T PRK04125 78 ISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFS 113 (141)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777776666555555555555444333
No 156
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=50.59 E-value=1.1e+02 Score=33.38 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=69.9
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCC-CceEEEecCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAP-CSVAVLVDRGF 595 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ap-c~V~i~v~r~~ 595 (782)
++..|-.+-..+ ..+...|++.|++.++.+|+.-+.+.....| ...+..+.+...++++ +||.+--|++.
T Consensus 14 ~~yAV~AfN~~n--~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g-------~~~~~~~~~~~ae~~~~VPValHLDHg~ 84 (347)
T TIGR01521 14 FGYGVPAFNVNN--MEQMRAIMEAADKTDSPVILQASRGARSYAG-------APFLRHLILAAIEEYPHIPVVMHQDHGN 84 (347)
T ss_pred cCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCC-------HHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 344555555544 5789999999999999999998876533222 1256677788888997 99999888875
Q ss_pred CCCCCCcccCccccccceEEEeccCCc--------chHHHHHH---HHHHhcCCCeEE
Q 003979 596 GFGSDQTVAEPAATVLKRVCIIFFGGP--------DDRRALDL---GGRMAENPGGNV 642 (782)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~Ilv~~~g~~--------~~~~al~~---a~~la~~~~~~l 642 (782)
.+ +..... -+..+.. |-+|||. +-+|-++. ..++|+..|+.+
T Consensus 85 ~~--e~i~~A-i~~GFtS--VMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsV 137 (347)
T TIGR01521 85 SP--ATCQRA-IQLGFTS--VMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASV 137 (347)
T ss_pred CH--HHHHHH-HHcCCCE--EeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 42 110000 0012333 4579986 33555544 444566666654
No 157
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=48.89 E-value=1.2e+02 Score=32.54 Aligned_cols=113 Identities=15% Similarity=0.182 Sum_probs=69.3
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCC-CceEEEecCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAP-CSVAVLVDRGF 595 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ap-c~V~i~v~r~~ 595 (782)
++..+-.+-..+ -.+..+|++.|++.++.+|+.-+.+.-...| ...+....+...++++ .||.+--|++.
T Consensus 15 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g-------~~~~~~~~~~~a~~~~~VPValHLDHg~ 85 (307)
T PRK05835 15 EGYGVGAFNFVN--FEMLNAIFEAGNEENSPLFIQASEGAIKYMG-------IDMAVGMVKIMCERYPHIPVALHLDHGT 85 (307)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCccHHhhCC-------hHHHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 444555555544 5789999999999999999998765432222 1245667778889998 99999888875
Q ss_pred CCCCCCcccCccccccceEEEeccCCcc-hHHHHHH---HHHHhcCCCeEEE
Q 003979 596 GFGSDQTVAEPAATVLKRVCIIFFGGPD-DRRALDL---GGRMAENPGGNVT 643 (782)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~Ilv~~~g~~~-~~~al~~---a~~la~~~~~~l~ 643 (782)
.+ +..... -+..+.. |-+|||.. -+|-++. +.++|+..|+.+.
T Consensus 86 ~~--e~i~~a-i~~GftS--VM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 132 (307)
T PRK05835 86 TF--ESCEKA-VKAGFTS--VMIDASHHAFEENLELTSKVVKMAHNAGVSVE 132 (307)
T ss_pred CH--HHHHHH-HHcCCCE--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 42 000000 0012333 45788863 3555544 4455666665543
No 158
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=48.81 E-value=3.2e+02 Score=28.06 Aligned_cols=91 Identities=13% Similarity=0.040 Sum_probs=54.9
Q ss_pred EeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCCCCCCCc
Q 003979 523 HSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQT 602 (782)
Q Consensus 523 ~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~~~~~~~ 602 (782)
..+.++|.+...++..+.+.+.++|.|++|-.. . +..+..+.+.+-+..+.||.++ .+. ..+.
T Consensus 10 h~~liDPdK~~~~~~~~~~~~~gtDai~VGGS~-~-----------~~~~d~vv~~ik~~~~lPvilf--Pg~---~~~v 72 (230)
T PF01884_consen 10 HATLIDPDKPNPEEALEAACESGTDAIIVGGSD-T-----------GVTLDNVVALIKRVTDLPVILF--PGS---PSQV 72 (230)
T ss_dssp EEEEE-TTSS-HHHHHHHHHCTT-SEEEEE-ST-H-----------CHHHHHHHHHHHHHSSS-EEEE--TST---CCG-
T ss_pred eEEEECCCCCCcHHHHHHHHhcCCCEEEECCCC-C-----------ccchHHHHHHHHhcCCCCEEEe--CCC---hhhc
Confidence 456788999999999999999999999999633 0 2234555666666689998776 321 2222
Q ss_pred ccCccccccceEEEeccCCcch--------HHHHHHHHHHh
Q 003979 603 VAEPAATVLKRVCIIFFGGPDD--------RRALDLGGRMA 635 (782)
Q Consensus 603 ~~~~~~~~~~~Ilv~~~g~~~~--------~~al~~a~~la 635 (782)
.+ ..+.+++|.--+..+ .++....+++.
T Consensus 73 s~-----~aDail~~svlNs~n~~~iig~~~~aa~~~~~~~ 108 (230)
T PF01884_consen 73 SP-----GADAILFPSVLNSRNPYWIIGAQVEAAPLIKKLG 108 (230)
T ss_dssp -T-----TSSEEEEEEETTBSSTTTTTHHHHHHHHHCHHHH
T ss_pred Cc-----CCCEEEEEEEecCCCcchHhhHHHHHHHHHHhhc
Confidence 22 356787776644333 35555555555
No 159
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=48.58 E-value=1.2e+02 Score=33.01 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=70.4
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCC-CceEEEecCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAP-CSVAVLVDRGF 595 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ap-c~V~i~v~r~~ 595 (782)
++..|-.+-..+ ..+...|++.|++.++.+|+.-+.+.....| -..+..+.+...++++ +||.+--|++.
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g-------~~~~~~~v~~~ae~~~~VPVaLHLDHg~ 86 (347)
T PRK13399 16 NGYGVPAFNVNN--MEQILAIMEAAEATDSPVILQASRGARKYAG-------DAMLRHMVLAAAEMYPDIPICLHQDHGN 86 (347)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCC-------HHHHHHHHHHHHHhcCCCcEEEECCCCC
Confidence 444555555544 5789999999999999999998876533222 1256777788888996 99999888875
Q ss_pred CCCCCCcccCccccccceEEEeccCCcc--------hHHHHHH---HHHHhcCCCeEEE
Q 003979 596 GFGSDQTVAEPAATVLKRVCIIFFGGPD--------DRRALDL---GGRMAENPGGNVT 643 (782)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~Ilv~~~g~~~--------~~~al~~---a~~la~~~~~~l~ 643 (782)
.+ +..... -+..+.. |-+|||.. -+|-++. ..++|+..|+.+.
T Consensus 87 ~~--e~i~~A-i~~GFtS--VMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 87 SP--ATCQSA-IRSGFTS--VMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred CH--HHHHHH-HhcCCCE--EEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 42 110000 0012333 45788855 3555544 4445666675554
No 160
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=48.55 E-value=72 Score=36.20 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=33.2
Q ss_pred cceEEEeccCCcchHHHHHHHHHHh-cCCCeEEEEEEeeec
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMA-ENPGGNVTLVRFIGQ 650 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la-~~~~~~l~vl~v~~~ 650 (782)
.++|++++.||.|+--.+....++. ...+.+++++||...
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhg 55 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHG 55 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCC
Confidence 4689999999999998888887776 445789999999753
No 161
>PRK08185 hypothetical protein; Provisional
Probab=45.63 E-value=61 Score=34.38 Aligned_cols=111 Identities=13% Similarity=0.167 Sum_probs=70.1
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFG 596 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~ 596 (782)
++..|-.+-..+ ..+...+++.|++.++..|+.-+.+.-...+ . .+....+...+++++||.+--|++..
T Consensus 11 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~~~----~----~~~~~~~~~a~~~~vPV~lHLDHg~~ 80 (283)
T PRK08185 11 HQFAVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPNELDFLG----D----NFFAYVRERAKRSPVPFVIHLDHGAT 80 (283)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcchhhhcc----H----HHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 344444454443 5789999999999999999998876533222 1 26667788889999999998888753
Q ss_pred CCCCCcccCccccccceEEEeccCCcch-HHHHHHHHHHh---cCCCeEE
Q 003979 597 FGSDQTVAEPAATVLKRVCIIFFGGPDD-RRALDLGGRMA---ENPGGNV 642 (782)
Q Consensus 597 ~~~~~~~~~~~~~~~~~Ilv~~~g~~~~-~~al~~a~~la---~~~~~~l 642 (782)
. +.....- +..+.. |-+|||.-+ +|-++.++++. +..|+.+
T Consensus 81 ~--e~i~~ai-~~Gf~S--VM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 81 I--EDVMRAI-RCGFTS--VMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred H--HHHHHHH-HcCCCE--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 1 1110000 002223 567887544 55555555554 6677666
No 162
>COG0679 Predicted permeases [General function prediction only]
Probab=45.24 E-value=4.2e+02 Score=28.44 Aligned_cols=173 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCh--hHHHHHHHHhhCccc----cCCchhhhcccCCCCchHHHHHHHHHHHHHHH
Q 003979 29 LLIIQTTLVLLTSHCLAVLIKPLRQPK--VIAEILGGILLGPSA----LGRNKEYLHLVFPSWSTPILESLASVGLLFFL 102 (782)
Q Consensus 29 ~~l~~i~lil~~~~~~~~l~~rl~~P~--iv~~il~GillGp~~----lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~ll 102 (782)
..++.....+.......+.+.+-+... -....+--++-.|.. +|..-...+.-+|+...+..+.+++...-..|
T Consensus 128 ~~i~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~l 207 (311)
T COG0679 128 AVIFLIIGLFLMFTLGVILLARSGGGTNKSLLSVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLAL 207 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHH
Q ss_pred HHHhhccCchhHHhccchhHHHHHH-HHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHc
Q 003979 103 FLVGLELDLSSIRQNGKSAFKIALA-GITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADL 181 (782)
Q Consensus 103 F~~Gle~d~~~l~~~~~~~~~i~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el 181 (782)
+..|+.++....++...+....+.. -.++.-+++..+...++.+ .........++...+++..-++.+.
T Consensus 208 i~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~----------~~~~~v~vl~~a~P~A~~~~v~a~~ 277 (311)
T COG0679 208 IALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVAKLLGLS----------GLALQVLVLLSAMPTAVNAYVLARQ 277 (311)
T ss_pred HHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHcCCC----------hHHHHHHHHHhhCcHHhHHHHHHHH
Q ss_pred cccCCchHHHHHHHHHHHhHHHHHHHHHHH
Q 003979 182 KLLTTQVGQTAMAAAAFNDVVAWILLALAV 211 (782)
Q Consensus 182 ~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~ 211 (782)
--.+.+...-....+.+--++.+.......
T Consensus 278 ~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 278 YGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHH
No 163
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=44.22 E-value=1e+02 Score=33.10 Aligned_cols=101 Identities=22% Similarity=0.307 Sum_probs=62.7
Q ss_pred HHHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC------ChHHHHHHHHHHhhccc
Q 003979 319 DFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMI------PVRESLALGVLMNTKGL 392 (782)
Q Consensus 319 ~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~------~~~~~~~lgl~m~~kG~ 392 (782)
.+.++++=|+-|..+|..+|++.+.... + ..++-..+=++ ...+++.+...|+ +.+|+-.+|++=+.-|-
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllanP-~--~~llGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLANP-R--TLLLGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhCh-H--HHHHHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 3446789999999999999998887521 2 11122222222 2235566666777 77999999887667776
Q ss_pred ceeec---cChhhHHHHHHHH----HHHHHhhhhhhcc
Q 003979 393 VELIV---LNDEMFAILVLMA----LFTTFMTTPMRQL 423 (782)
Q Consensus 393 ~~lvl---i~~~~~~~lv~~~----~v~t~i~~pl~~~ 423 (782)
.++.+ +.++.+..+.+++ -+.-.+.+|+++.
T Consensus 135 t~If~s~~lap~Llg~IaVAAYsYMaLvPiiqPpimkl 172 (354)
T TIGR01109 135 TAIYLSGKLAPELLAAIAVAAYSYMALVPIIQPPIMKA 172 (354)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHHHHHHHhcccchHHHh
Confidence 66665 5565555442221 2334556777776
No 164
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=43.99 E-value=39 Score=33.15 Aligned_cols=117 Identities=13% Similarity=0.079 Sum_probs=64.0
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHHHH
Q 003979 612 KRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDFMR 691 (782)
Q Consensus 612 ~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 691 (782)
+||++.+.|+..+-++.++..++.+. |.+++++ -.+.... . .+ .+.++++.
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~~-g~~V~vi---~T~~A~~----------------f-----i~---~~~l~~l~- 51 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTKL-GYDVTVL---MTQAATQ----------------F-----IT---PLTLQVLS- 51 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHHC-CCEEEEE---EChHHHh----------------h-----cc---HhhHHHHh-
Confidence 47999999999999999999988764 6665543 2211100 0 00 11123222
Q ss_pred hcCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCC--CccccccccccCCCCcccccchhhhhcCCCCCcccEEEE
Q 003979 692 KWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRF--PSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVI 769 (782)
Q Consensus 692 ~~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~--~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLvv 769 (782)
+...|.+..-+...+.+..+....++|++++.---. =+.+..|+.+ -.+..+.. +.. .+.||+++
T Consensus 52 ---~~~v~~~~~~~~~~~~~~hi~l~~~aD~~vVaPaSanTlakiA~GiaD-----nLlt~~a~--a~~---~~~pv~i~ 118 (177)
T TIGR02113 52 ---KNPVHLDVMDEHDPKVINHIELAKKADLFLVAPASANTIAHLAHGFAD-----NIVTSVAL--ALP---PETPKLIA 118 (177)
T ss_pred ---CCCeEeeccccccCCCcccceechhhCEEEEEeCCHHHHHHHHcCcCC-----cHHHHHHH--HcC---CCCCEEEE
Confidence 122233332211111222344444589998887652 3456677776 44444444 222 46799998
Q ss_pred e
Q 003979 770 Q 770 (782)
Q Consensus 770 q 770 (782)
-
T Consensus 119 P 119 (177)
T TIGR02113 119 P 119 (177)
T ss_pred e
Confidence 7
No 165
>COG2035 Predicted membrane protein [Function unknown]
Probab=42.61 E-value=4.3e+02 Score=27.79 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhC
Q 003979 26 AFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLG 67 (782)
Q Consensus 26 ~~~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillG 67 (782)
=.|+..-.+..++.+++++.++++. .|.++-..++|+++|
T Consensus 58 Li~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~ 97 (276)
T COG2035 58 LIPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILG 97 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHH
Confidence 3466666677777888888888887 667777778999998
No 166
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=42.55 E-value=94 Score=33.02 Aligned_cols=113 Identities=8% Similarity=0.053 Sum_probs=69.3
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFG 596 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~ 596 (782)
++..+-.+-..+ ..+...+++.|++.++..|+.-+.+.-...+ -..+....+...+++++||.+--|++..
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-------~~~~~~~~~~~a~~~~VPValHLDH~~~ 86 (284)
T PRK12737 16 EGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAG-------TDYIVAIAEVAARKYNIPLALHLDHHED 86 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCC-------HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 444555555544 5789999999999999999987655432222 1246677788999999999998888753
Q ss_pred CCCCCcccCccccccceEEEeccCCcch-HHHH---HHHHHHhcCCCeEEE
Q 003979 597 FGSDQTVAEPAATVLKRVCIIFFGGPDD-RRAL---DLGGRMAENPGGNVT 643 (782)
Q Consensus 597 ~~~~~~~~~~~~~~~~~Ilv~~~g~~~~-~~al---~~a~~la~~~~~~l~ 643 (782)
+ +..... -+..+.. |-+|||.-+ +|-+ +...++|+..|+.+.
T Consensus 87 ~--e~i~~a-i~~GftS--VMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12737 87 L--DDIKKK-VRAGIRS--VMIDGSHLSFEENIAIVKEVVEFCHRYDASVE 132 (284)
T ss_pred H--HHHHHH-HHcCCCe--EEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 1 110000 0012333 457887543 3444 444555666666544
No 167
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=41.22 E-value=1.3e+02 Score=32.90 Aligned_cols=91 Identities=12% Similarity=0.057 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccC-CCc-chh----hhc---ccchH
Q 003979 503 HDQIVTSFEAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRR-EGE-EEI----ARV---CHGWR 573 (782)
Q Consensus 503 ~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~-~~~-~~~----~~~---~~~~~ 573 (782)
.+++.+.++...+ ++..|-.+-..+ ..+...+++.|++.++..|+.-+.+.-.. .|. ++. .+. ...+.
T Consensus 12 ~~~~~~lL~~A~~-~~yAVgAfNv~n--~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 88 (357)
T TIGR01520 12 GDDVHKLFQYAKE-NNFAIPAINCTS--SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGA 88 (357)
T ss_pred HHHHHHHHHHHHH-CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHH
Confidence 5677777766544 344444554444 58899999999999999999987665322 110 000 000 00266
Q ss_pred HHHHHHhhcCCCceEEEecCCCC
Q 003979 574 EVNRTVLQNAPCSVAVLVDRGFG 596 (782)
Q Consensus 574 ~v~~~Vl~~apc~V~i~v~r~~~ 596 (782)
...+...+++++||.+--|++..
T Consensus 89 ~~v~~~Ae~a~VPValHLDHg~~ 111 (357)
T TIGR01520 89 HHVHSIAEHYGVPVVLHTDHCAK 111 (357)
T ss_pred HHHHHHHHHCCCCEEEECCCCCC
Confidence 67788999999999998888754
No 168
>PRK01821 hypothetical protein; Provisional
Probab=40.79 E-value=3.1e+02 Score=25.58 Aligned_cols=101 Identities=14% Similarity=0.034 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCh---hHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHH
Q 003979 28 PLLIIQTTLVLLTSHCLAVLIKPLRQPK---VIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFL 104 (782)
Q Consensus 28 ~~~l~~i~lil~~~~~~~~l~~rl~~P~---iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~ 104 (782)
..++.|+.+++.+..+...+.+-+++|- ++|.++-=+.+. ++...+ +.+ ....--.++++++.|+=--
T Consensus 9 ~~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~---~~~vk~--~~v----~~~a~~LL~~m~LfFVPa~ 79 (133)
T PRK01821 9 WQYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLA---LQILPA--KWV----KPGCSLLIRYMALLFVPIG 79 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCCcCH--HHH----HHHHHHHHHHHHHHHhhhH
Confidence 3457778888887777777777777653 344432211111 122211 000 0011123445555555555
Q ss_pred HhhccCchhHHhccchhHHHHHHHHHHHHHHHH
Q 003979 105 VGLELDLSSIRQNGKSAFKIALAGITLPFLFGA 137 (782)
Q Consensus 105 ~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~ 137 (782)
+|+=...+.+++++.+.+...+.+.++.++.+.
T Consensus 80 VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg 112 (133)
T PRK01821 80 VGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVG 112 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665555555555554443
No 169
>PRK01658 holin-like protein; Validated
Probab=39.56 E-value=3e+02 Score=25.17 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCh---hHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHH
Q 003979 28 PLLIIQTTLVLLTSHCLAVLIKPLRQPK---VIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFL 104 (782)
Q Consensus 28 ~~~l~~i~lil~~~~~~~~l~~rl~~P~---iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~ 104 (782)
..++.|+.+++.+..+...+.+-+++|- ++|.++-=+.+. .+.... +.+ ....--.++++++.|+=--
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L~---~~~ik~--~~v----~~~a~~Ll~~m~llFVPa~ 74 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLLS---FKILKL--KWI----ELGAETLLAELPLFFIPSA 74 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH---hCCcCH--HHH----HHHHHHHHHHHHHHHHHhh
Confidence 3467788888888777777777666653 344433222221 222211 000 0111223455555555556
Q ss_pred HhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHH
Q 003979 105 VGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVS 140 (782)
Q Consensus 105 ~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 140 (782)
+|+=-..+.+++++-+.+.....+.++.++++..+.
T Consensus 75 VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~ 110 (122)
T PRK01658 75 VGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLT 110 (122)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677666777777776666666666665555444333
No 170
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=39.39 E-value=1.1e+02 Score=32.64 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=47.3
Q ss_pred HHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHH
Q 003979 57 IAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFG 136 (782)
Q Consensus 57 v~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~ 136 (782)
+-.++.|+++|+. .+.+.+.+ ..-..+-+-|+-|..|-.+|+..+.+.+-.-+.+++..+++.....
T Consensus 175 llP~iiG~iLGNL----D~~~r~fl---------~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 175 LLPIIIGMILGNL----DPDFRKFL---------APGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHHHH---------hcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 4457899999962 22222222 2222234567889999999999999999888888776666555444
Q ss_pred HHHHHH
Q 003979 137 AGVSLF 142 (782)
Q Consensus 137 ~~~~~~ 142 (782)
+.+..+
T Consensus 242 ~~~dr~ 247 (314)
T PF03812_consen 242 YLADRL 247 (314)
T ss_pred HHHHHH
Confidence 444433
No 171
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=39.26 E-value=4.4e+02 Score=26.94 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhh
Q 003979 310 AVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNT 389 (782)
Q Consensus 310 ~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~ 389 (782)
++.+..-+++-+--+-.|+|= ++..+.. .|.-+..-+++..+.-++.+++.+++++.+.. +..+ +.|
T Consensus 61 ~~~i~~lLgPAtVAlAvPLYk-------q~~~ik~--~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~~S--l~P 127 (230)
T COG1346 61 GQWINFLLGPATVALAVPLYK-------QRHLIKR--HWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LILS--LLP 127 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHH--hcc
Confidence 344444455544455566551 2333433 56666666777777788888999999998743 3333 456
Q ss_pred cccc
Q 003979 390 KGLV 393 (782)
Q Consensus 390 kG~~ 393 (782)
|...
T Consensus 128 kSvT 131 (230)
T COG1346 128 KSVT 131 (230)
T ss_pred cccc
Confidence 6653
No 172
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=39.14 E-value=1.1e+02 Score=32.47 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=68.4
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFG 596 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~ 596 (782)
++..+-.+-..+ ..+...+++.|++.++..|+.-..+.-...| -..+........+++++||.+--|++..
T Consensus 16 ~~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g-------~~~~~~~~~~~A~~~~VPValHLDH~~~ 86 (284)
T PRK12857 16 GGYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAG-------IEYISAMVRTAAEKASVPVALHLDHGTD 86 (284)
T ss_pred cCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCC-------HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 333444454444 4789999999999999999998765432222 1146666778889999999998888753
Q ss_pred CCCCCcccCccccccceEEEeccCCcch-HHHHHH---HHHHhcCCCeEEE
Q 003979 597 FGSDQTVAEPAATVLKRVCIIFFGGPDD-RRALDL---GGRMAENPGGNVT 643 (782)
Q Consensus 597 ~~~~~~~~~~~~~~~~~Ilv~~~g~~~~-~~al~~---a~~la~~~~~~l~ 643 (782)
. +..... -+..+..| -+|||.-+ +|-++. ..++|+..|+.+.
T Consensus 87 ~--e~i~~a-i~~GftSV--M~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12857 87 F--EQVMKC-IRNGFTSV--MIDGSKLPLEENIALTKKVVEIAHAVGVSVE 132 (284)
T ss_pred H--HHHHHH-HHcCCCeE--EEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 1 010000 00123344 46887543 444444 4445566665543
No 173
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=37.03 E-value=80 Score=33.69 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=31.4
Q ss_pred cceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQ 650 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~ 650 (782)
+.+.++.+.||.|+--.+.++.+.....+.++.++++.+.
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG 58 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTG 58 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecC
Confidence 4456788999999999999998886554667888888654
No 174
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=36.47 E-value=61 Score=34.76 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=32.2
Q ss_pred cceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQ 650 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~ 650 (782)
+.++++.+.||.|+.-.+.+|.+.....+..+.++++.+.
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG 66 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTG 66 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCC
Confidence 4678999999999999999998876544567788888654
No 175
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=36.04 E-value=1.1e+02 Score=32.31 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=69.6
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFG 596 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~ 596 (782)
++..+-.+-..+ -.+...+++.|++.++.+|+..+.+.-...| -..+....+...+++.+||.+--|++..
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g-------~~~~~~~~~~~A~~~~vPV~lHLDH~~~ 86 (283)
T PRK07998 16 KHVLAGAFNTTN--LETTISILNAIERSGLPNFIQIAPTNAQLSG-------YDYIYEIVKRHADKMDVPVSLHLDHGKT 86 (283)
T ss_pred CCCEEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECcHhHHhhCC-------HHHHHHHHHHHHHHCCCCEEEECcCCCC
Confidence 334444444433 4788999999999999999998655422221 1256777788899999999998888743
Q ss_pred CCCCCcccCccccccceEEEeccCCcchH-HHH---HHHHHHhcCCCeEE
Q 003979 597 FGSDQTVAEPAATVLKRVCIIFFGGPDDR-RAL---DLGGRMAENPGGNV 642 (782)
Q Consensus 597 ~~~~~~~~~~~~~~~~~Ilv~~~g~~~~~-~al---~~a~~la~~~~~~l 642 (782)
+ +..... -+..+..|. +|||..+- |-+ +...++|+..|+.+
T Consensus 87 ~--e~i~~A-i~~GftSVM--~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 87 F--EDVKQA-VRAGFTSVM--IDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred H--HHHHHH-HHcCCCEEE--EeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 1 000000 011344554 48886553 444 44556667777654
No 176
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=35.54 E-value=1.4e+02 Score=26.05 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=26.1
Q ss_pred EEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003979 614 VCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQ 650 (782)
Q Consensus 614 Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~ 650 (782)
+++.+.||.|+--.+..+.+... ++..+++...
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~----~~~~~~~~~~ 33 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGY----QVIAVTVDHG 33 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCC----CEEEEEEcCC
Confidence 47899999999998888887632 6788888654
No 177
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=35.51 E-value=1.5e+02 Score=31.38 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=67.9
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFG 596 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~ 596 (782)
++..|-.+-..+ ..+.+.+++.|++.++..|+.-+.+.-...+ ...+........+++++||.+--|++..
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~-------~~~~~~~~~~~a~~~~vpv~lHlDH~~~ 86 (281)
T PRK06806 16 ENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSP-------LHLIGPLMVAAAKQAKVPVAVHFDHGMT 86 (281)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCC-------hHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 444555555544 5789999999999999999998765432211 1146667778899999999998888743
Q ss_pred CCCCCcccCccccccceEEEeccCCc-chHHHHHHHHHH---hcCCCeEE
Q 003979 597 FGSDQTVAEPAATVLKRVCIIFFGGP-DDRRALDLGGRM---AENPGGNV 642 (782)
Q Consensus 597 ~~~~~~~~~~~~~~~~~Ilv~~~g~~-~~~~al~~a~~l---a~~~~~~l 642 (782)
. +.....- +..+.. |-+|++. +.+|-++.++++ ++..|+.+
T Consensus 87 ~--e~i~~Al-~~G~ts--Vm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 87 F--EKIKEAL-EIGFTS--VMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred H--HHHHHHH-HcCCCE--EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 1 1100000 001212 3456653 445666555554 56666554
No 178
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=33.96 E-value=2.3e+02 Score=30.26 Aligned_cols=74 Identities=24% Similarity=0.306 Sum_probs=46.9
Q ss_pred HHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHH
Q 003979 57 IAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFG 136 (782)
Q Consensus 57 v~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~ 136 (782)
+-.++.|+++|+. .+.+.+ ++.+ -..+-.-|+-|..|-.+|++.+.+.+-.-+.+++...+++....
T Consensus 175 ilPlliG~ilGNL----D~~~r~-fl~~--------~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~ 241 (314)
T TIGR00793 175 VLPFLVGFALGNL----DPELRD-FFSK--------AVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPL 241 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHH-Hhcc--------CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 4457889999962 222222 2221 12233567889999999999999988887877776666555555
Q ss_pred HHHHHHH
Q 003979 137 AGVSLFL 143 (782)
Q Consensus 137 ~~~~~~l 143 (782)
+....++
T Consensus 242 ~~~dr~~ 248 (314)
T TIGR00793 242 ILADKFI 248 (314)
T ss_pred HHHHHHh
Confidence 4444444
No 179
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=33.69 E-value=1.5e+02 Score=31.54 Aligned_cols=113 Identities=8% Similarity=0.037 Sum_probs=69.2
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFG 596 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~ 596 (782)
++..|-.+-..+ ..+.+.|++.|++.++..|+.-+.+.-...+ ...+....+...+++.+||.+--|++..
T Consensus 14 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-------~~~~~~~~~~~a~~~~VPValHLDHg~~ 84 (282)
T TIGR01858 14 GGYAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHAG-------TEYIVALCSAASTTYNMPLALHLDHHES 84 (282)
T ss_pred cCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhCC-------HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 344444554444 5789999999999999999998765532221 1246677889999999999998888753
Q ss_pred CCCCCcccCccccccceEEEeccCCcch-HHHH---HHHHHHhcCCCeEEE
Q 003979 597 FGSDQTVAEPAATVLKRVCIIFFGGPDD-RRAL---DLGGRMAENPGGNVT 643 (782)
Q Consensus 597 ~~~~~~~~~~~~~~~~~Ilv~~~g~~~~-~~al---~~a~~la~~~~~~l~ 643 (782)
+ +..... -+..+..| -+|||.-+ +|-+ +.+.++|+..|+.+.
T Consensus 85 ~--e~i~~a-i~~GFtSV--M~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 130 (282)
T TIGR01858 85 L--DDIRQK-VHAGVRSA--MIDGSHFPFAQNVKLVKEVVDFCHRQDCSVE 130 (282)
T ss_pred H--HHHHHH-HHcCCCEE--eecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 2 110000 00123344 57887544 3444 444455666665443
No 180
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=33.65 E-value=1.5e+02 Score=31.48 Aligned_cols=113 Identities=9% Similarity=0.056 Sum_probs=68.0
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFG 596 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~ 596 (782)
++..+-.+-..+ ..+.+.+++.|++.++..|+.-..+.-...+ ...+........+++++||.+--|++..
T Consensus 16 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-------~~~~~~~~~~~a~~~~VPValHLDHg~~ 86 (286)
T PRK12738 16 NGYAVPAFNIHN--AETIQAILEVCSEMRSPVILAGTPGTFKHIA-------LEEIYALCSAYSTTYNMPLALHLDHHES 86 (286)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcCcchhhhCC-------HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 344444444444 5789999999999999999987654422111 1245677888899999999998888754
Q ss_pred CCCCCcccCccccccceEEEeccCCcch-HHHHHH---HHHHhcCCCeEEE
Q 003979 597 FGSDQTVAEPAATVLKRVCIIFFGGPDD-RRALDL---GGRMAENPGGNVT 643 (782)
Q Consensus 597 ~~~~~~~~~~~~~~~~~Ilv~~~g~~~~-~~al~~---a~~la~~~~~~l~ 643 (782)
+ +..... -+..+.. |-+|||..+ +|-++. ..++|+..|+.+.
T Consensus 87 ~--e~i~~a-i~~GFtS--VM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VE 132 (286)
T PRK12738 87 L--DDIRRK-VHAGVRS--AMIDGSHFPFAENVKLVKSVVDFCHSQDCSVE 132 (286)
T ss_pred H--HHHHHH-HHcCCCe--EeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 2 110000 0012333 357887544 444443 4445555565443
No 181
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=33.33 E-value=50 Score=35.48 Aligned_cols=39 Identities=28% Similarity=0.508 Sum_probs=34.7
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCe-EEEEEEee
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGG-NVTLVRFI 648 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~-~l~vl~v~ 648 (782)
.+.+|+|.|.||.|+---|.++.+.|++.+- +++|+++-
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD 65 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID 65 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc
Confidence 4679999999999999999999999988765 89998884
No 182
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=33.04 E-value=8.9e+02 Score=28.69 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=8.2
Q ss_pred hhHHHHHHHhhc
Q 003979 324 LLLPLYFASSGL 335 (782)
Q Consensus 324 ~f~plfF~~~G~ 335 (782)
.++|+||+..|.
T Consensus 552 a~lpL~~~Ggg~ 563 (604)
T PRK12933 552 TAVVLYSIGNGP 563 (604)
T ss_pred HHHHHHHHcccc
Confidence 477888776663
No 183
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=32.49 E-value=2.4e+02 Score=31.07 Aligned_cols=129 Identities=13% Similarity=0.148 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHhcCCCCc-----hHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 003979 291 HAIFGAFVFGLTIPKGGE-----FAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILG 365 (782)
Q Consensus 291 ~~~lgaf~aGl~~~~~~~-----~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~ 365 (782)
++.+=+.++|+++.-.++ +...+.+-++.+ .....|+-.+.+|+.+..........+......++..++.-.+.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 444445555555432111 124556666666 67889999999999887544332112333333466666666777
Q ss_pred HHHHHHHhCCChHHHHHHHH-HHhhcccceeec-----cChhhHHHHHHHHHHHHHhhhhh
Q 003979 366 TFVMALLCMIPVRESLALGV-LMNTKGLVELIV-----LNDEMFAILVLMALFTTFMTTPM 420 (782)
Q Consensus 366 ~~l~~~~~~~~~~~~~~lgl-~m~~kG~~~lvl-----i~~~~~~~lv~~~~v~t~i~~pl 420 (782)
++...+.++++......+-+ .-.|-+....++ .+++..+..++...+.++++.|+
T Consensus 323 ~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~ 383 (385)
T PF03547_consen 323 GIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPL 383 (385)
T ss_pred HHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777865443221111 112333222222 55555555544444444444444
No 184
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=32.40 E-value=1.9e+02 Score=31.63 Aligned_cols=89 Identities=12% Similarity=0.085 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccC-CCc-ch------hhhcccchHHHH
Q 003979 505 QIVTSFEAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRR-EGE-EE------IARVCHGWREVN 576 (782)
Q Consensus 505 ~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~-~~~-~~------~~~~~~~~~~v~ 576 (782)
+..+.|+...+ ++..+-.+-..+ ..+.+.|++.|++.++..|+.-+.+.... .+. ++ +-++...+....
T Consensus 3 ~~k~iL~~A~~-~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 79 (345)
T cd00946 3 DVLKLFDYAKE-NGFAIPAVNCTS--SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHV 79 (345)
T ss_pred HHHHHHHHHHH-CCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHH
Confidence 34444444333 334444444443 57899999999999999999987663221 111 00 000000466777
Q ss_pred HHHhhcCCCceEEEecCCCC
Q 003979 577 RTVLQNAPCSVAVLVDRGFG 596 (782)
Q Consensus 577 ~~Vl~~apc~V~i~v~r~~~ 596 (782)
+...+++++||.+--|++..
T Consensus 80 ~~~A~~~~VPValHLDHg~~ 99 (345)
T cd00946 80 RSMAEHYGVPVVLHTDHCAK 99 (345)
T ss_pred HHHHHHCCCCEEEECCCCCC
Confidence 88899999999998888744
No 185
>TIGR00930 2a30 K-Cl cotransporter.
Probab=32.37 E-value=1.1e+03 Score=29.69 Aligned_cols=128 Identities=11% Similarity=0.168 Sum_probs=73.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEA 512 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 512 (782)
-++|+.+.+++..+++++++..+. + ......+-|+++-+.+... + +.+...+..++
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l~--~-~~gl~i~~~v~~~~~~~~~----~-----------------~~~~~~~~~~~ 631 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQFT--K-GKGLMICGSVIQGPRLECV----K-----------------EAQAAEAKIQT 631 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHhc--c-CCcEEEEEEEecCchhhhH----H-----------------HHHHHHHHHHH
Confidence 469999999999999999999987 2 3335555688864321110 0 01112222233
Q ss_pred HhhccceEEEEeEEecCCCchHHHHHHHHHh-----cCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCce
Q 003979 513 YKQLRRVTIRHSTAISALSTMHEDIFHVAEA-----KRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSV 587 (782)
Q Consensus 513 ~~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~-----~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V 587 (782)
+-+..+++.=..+..+ .++.+++-.+.+. -+++.++|||...|..+...+. +..++.+ +.. ..+...|
T Consensus 632 ~~~~~~~~~f~~~~~~--~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~---~~y~~~i-~~a-~~~~~~v 704 (953)
T TIGR00930 632 WLEKNKVKAFYAVVVA--DDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPRAW---ETYIGII-HDA-FDAHLAV 704 (953)
T ss_pred HHHHhCCCeEEEEecC--CCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccchhH---HHHHHHH-HHH-HHcCCcE
Confidence 3222333332222333 5888888888876 5689999999988764432111 1223333 333 3566777
Q ss_pred EEEe
Q 003979 588 AVLV 591 (782)
Q Consensus 588 ~i~v 591 (782)
.|++
T Consensus 705 ~i~r 708 (953)
T TIGR00930 705 VVVR 708 (953)
T ss_pred EEEc
Confidence 7763
No 186
>PRK09903 putative transporter YfdV; Provisional
Probab=32.24 E-value=2.2e+02 Score=30.53 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=54.8
Q ss_pred hhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003979 292 AIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMAL 371 (782)
Q Consensus 292 ~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~ 371 (782)
+++.-...|..+.+.....++..+.++.++..+.+|...+..-.+.+.+.... .+... ....+.++.-++.+++.++
T Consensus 11 pif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~ 87 (314)
T PRK09903 11 PIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFA--DTRLT-LVSLVVIVGCFFFSWFGCY 87 (314)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHh--hhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 34455566777777677778888899999999999998777777776544332 22222 2222233333444555553
Q ss_pred -HhCCChHHHHHHHH
Q 003979 372 -LCMIPVRESLALGV 385 (782)
Q Consensus 372 -~~~~~~~~~~~lgl 385 (782)
+.+.+.+++...++
T Consensus 88 ~~~~~~~~~~~~~~~ 102 (314)
T PRK09903 88 KFFKRTHAEAAVCAL 102 (314)
T ss_pred HHhcCCcchhhHhhh
Confidence 55666555533333
No 187
>COG3748 Predicted membrane protein [Function unknown]
Probab=32.22 E-value=4.1e+02 Score=28.51 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=26.4
Q ss_pred HhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHH
Q 003979 322 SGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGK 362 (782)
Q Consensus 322 ~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K 362 (782)
+.+-+|+.|+++--+..+..- ...+|.+..++.+..+..|
T Consensus 226 nylTLPVlF~MlSNHyp~~~g-t~fnWii~alv~l~gV~IR 265 (407)
T COG3748 226 NYLTLPVLFTMLSNHYPLAFG-TQFNWIIAALVFLMGVLIR 265 (407)
T ss_pred ceehHHHHHHHHhccCccccc-CchhHHHHHHHHHHHHHHH
Confidence 578899999998877776443 3357876555555444443
No 188
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=31.61 E-value=2.8e+02 Score=32.61 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 003979 33 QTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLEL 109 (782)
Q Consensus 33 ~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~ 109 (782)
+..++++.+++...+++.++...+++-+.+|+.+|...-...++-.+ .......+.++.+.-.+++...|+++
T Consensus 239 e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~----~~~~~f~~~ls~l~e~~IFvlLGl~l 311 (559)
T TIGR00840 239 EPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQ----TTIKYFMKMLSSLSETLIFIFLGVSL 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677777888889999999999999998653222211000 01134677777777788888899876
No 189
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=31.49 E-value=8.5e+02 Score=27.96 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhcc
Q 003979 130 TLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITA 170 (782)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts 170 (782)
.+|+.+++.++-.++-.. ..++.+|.++...+
T Consensus 160 FLPi~v~~saak~f~~np---------~lg~~ig~~L~~P~ 191 (472)
T PRK09796 160 FLPLMVAASAAIKFKTNM---------SLAIAIAGVLVHPS 191 (472)
T ss_pred HHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHCcc
Confidence 457777776666654322 34566666665433
No 190
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=30.95 E-value=4.7e+02 Score=28.43 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=34.2
Q ss_pred HHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 003979 98 LLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFL 143 (782)
Q Consensus 98 l~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 143 (782)
+-+..|..|..+++..+.+.+-....+++...+++..+++....++
T Consensus 205 Lp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 205 IPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred HHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhhee
Confidence 3446677999999999999988888888877777666555545444
No 191
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=30.75 E-value=6.9e+02 Score=29.82 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=10.0
Q ss_pred CChhHHHHHHHHhhC
Q 003979 53 QPKVIAEILGGILLG 67 (782)
Q Consensus 53 ~P~iv~~il~GillG 67 (782)
.|-+...+-+|++-|
T Consensus 111 ~PiIP~l~aaGllkg 125 (627)
T PRK09824 111 TPLIGVMAATGILKG 125 (627)
T ss_pred hhhHHHHHHHHHHHH
Confidence 366666667777666
No 192
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=30.70 E-value=5.4e+02 Score=25.43 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Q 003979 351 LVLVISMACAGKILGTFVMALLCMI 375 (782)
Q Consensus 351 ~~~~v~~~~~~K~i~~~l~~~~~~~ 375 (782)
..+.++...++-++|++++.+.+|.
T Consensus 161 ~~~~~~~t~v~~~iG~~iG~kllkK 185 (189)
T TIGR02185 161 AVIMIVLTAVAGIAGVLIGKKLLKK 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667778888888877653
No 193
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=29.90 E-value=8.4e+02 Score=27.41 Aligned_cols=99 Identities=13% Similarity=0.050 Sum_probs=63.1
Q ss_pred HHHHHhhhc-cCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhc-cCchhHHhccc
Q 003979 42 HCLAVLIKP-LRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLE-LDLSSIRQNGK 119 (782)
Q Consensus 42 ~~~~~l~~r-l~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle-~d~~~l~~~~~ 119 (782)
+.++.++++ +++|..+..|+.=+++.- +|.+++..+ ....++-+++..--.--+|+-.|+. +|++++.+...
T Consensus 259 y~~G~ll~~~i~ih~~a~mIi~~~i~K~--~~lvP~~~e----~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t 332 (414)
T PF03390_consen 259 YILGVLLSKLIGIHAYAWMIILVAIVKA--FGLVPESLE----EGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFT 332 (414)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHH--hCcCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhC
Confidence 344444443 599999999988887763 455443111 1234667777777777899999998 99999988776
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 003979 120 SAFKIALAGITLP-FLFGAGVSLFLQKA 146 (782)
Q Consensus 120 ~~~~i~~~~~~~~-~~~~~~~~~~l~~~ 146 (782)
....+-....++. .+.++.++.++++.
T Consensus 333 ~~~vv~~~~~Vl~~~~~a~~vG~l~g~Y 360 (414)
T PF03390_consen 333 PQYVVIVLATVLGAVIGAFLVGKLVGFY 360 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6655544443333 33445556666543
No 194
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=29.38 E-value=2e+02 Score=30.45 Aligned_cols=113 Identities=15% Similarity=0.113 Sum_probs=68.5
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFG 596 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~ 596 (782)
++..|-.+-..+ ..+.+.+++.|++.++.+|+.-+.+.-...+ -..+....+...+++++||.+--|++.+
T Consensus 11 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~-------~~~~~~~~~~~a~~~~VPV~lHLDH~~~ 81 (276)
T cd00947 11 GGYAVGAFNINN--LETLKAILEAAEETRSPVILQISEGAIKYAG-------LELLVAMVKAAAERASVPVALHLDHGSS 81 (276)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhCC-------HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 344444554444 4789999999999999999988765432222 1256677788899999999998888753
Q ss_pred CCCCCcccCccccccceEEEeccCCcch-HHHHHH---HHHHhcCCCeEEE
Q 003979 597 FGSDQTVAEPAATVLKRVCIIFFGGPDD-RRALDL---GGRMAENPGGNVT 643 (782)
Q Consensus 597 ~~~~~~~~~~~~~~~~~Ilv~~~g~~~~-~~al~~---a~~la~~~~~~l~ 643 (782)
. +..... -+..+..| -+|||..+ +|-++. ..++|+..|+.+.
T Consensus 82 ~--~~i~~a-i~~GftSV--MiD~S~l~~eeNi~~t~~vv~~ah~~gv~VE 127 (276)
T cd00947 82 F--ELIKRA-IRAGFSSV--MIDGSHLPFEENVAKTKEVVELAHAYGVSVE 127 (276)
T ss_pred H--HHHHHH-HHhCCCEE--EeCCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 1 111000 00123344 46776443 444444 4445565665543
No 195
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=29.29 E-value=3.3e+02 Score=28.34 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=30.7
Q ss_pred cceEEEeccCCcchHHHHHHHHHHhcCC--CeEEEEEEeee
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMAENP--GGNVTLVRFIG 649 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la~~~--~~~l~vl~v~~ 649 (782)
-++|+|++.||.|+--.+..+.++.+.. +-++..+++..
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~ 69 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQ 69 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecC
Confidence 4689999999999998888888877554 45777777753
No 196
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=29.27 E-value=1.9e+02 Score=30.65 Aligned_cols=113 Identities=9% Similarity=0.037 Sum_probs=68.8
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFG 596 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~ 596 (782)
++..+-.+-..+ ..+...+++.|++.++..|+.-+.+.-...+ -..+........+++++||.+--|++..
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-------~~~~~~~~~~~A~~~~VPV~lHLDHg~~ 86 (284)
T PRK09195 16 GGYAVPAFNIHN--LETMQVVVETAAELHSPVIIAGTPGTFSYAG-------TEYLLAIVSAAAKQYHHPLALHLDHHEK 86 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcChhHHhhCC-------HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 344444444443 5889999999999999999988765432222 1146667788899999999998888754
Q ss_pred CCCCCcccCccccccceEEEeccCCcch-HHHH---HHHHHHhcCCCeEEE
Q 003979 597 FGSDQTVAEPAATVLKRVCIIFFGGPDD-RRAL---DLGGRMAENPGGNVT 643 (782)
Q Consensus 597 ~~~~~~~~~~~~~~~~~Ilv~~~g~~~~-~~al---~~a~~la~~~~~~l~ 643 (782)
+ +..... -++.+..| -+|||.-+ +|-+ +...++|+..|+.+.
T Consensus 87 ~--e~i~~A-i~~GftSV--M~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VE 132 (284)
T PRK09195 87 F--DDIAQK-VRSGVRSV--MIDGSHLPFAQNISLVKEVVDFCHRFDVSVE 132 (284)
T ss_pred H--HHHHHH-HHcCCCEE--EeCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 2 000000 00123343 57887544 3333 445555666665443
No 197
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=28.14 E-value=2.5e+02 Score=26.85 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=25.8
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 003979 613 RVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIG 649 (782)
Q Consensus 613 ~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~ 649 (782)
++++.+.||.|+--++..+.+. +-+++.+++..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~ 33 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDY 33 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEEC
Confidence 5789999999999998888763 44677777754
No 198
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=27.79 E-value=6e+02 Score=25.03 Aligned_cols=126 Identities=13% Similarity=0.251 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHH--HHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 003979 243 FMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLT--DLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDF 320 (782)
Q Consensus 243 ~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~--~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~ 320 (782)
+...+..+..-.+..|. |+. ...+...+...++..... -..-...+++++++=++...+ .+++.-...+...
T Consensus 39 i~ali~g~vyml~~~KV-~K~----G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g-~y~~~~~~~iay~ 112 (186)
T PF09605_consen 39 IAALICGIVYMLMVAKV-PKR----GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKG-GYKSKKRNTIAYA 112 (186)
T ss_pred HHHHHHHHHHHHHHHHc-Cch----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHH
Confidence 44455666666777777 431 222222222222111111 223445666777777777542 3332222222111
Q ss_pred -----HHhhhHHHHHHHhhcc---------cc-cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 003979 321 -----VSGLLLPLYFASSGLK---------TD-VAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCM 374 (782)
Q Consensus 321 -----~~~~f~plfF~~~G~~---------id-~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~ 374 (782)
..+-+.|++|..=... -+ ...+.+..+.+...+.++..+++-++|++++.+..|
T Consensus 113 vf~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 113 VFSLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256677776543333 11 111111112234455666677778888888877765
No 199
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=27.51 E-value=93 Score=33.56 Aligned_cols=48 Identities=8% Similarity=0.135 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhc-CCcEEEEEEEec---ChHHHHHHhhccc------CCcEEEEccCC
Q 003979 682 DEAAVDDFMRKW-GGSVEYEEKVMA---NVKDEVLKIGQIR------DYELVVVGKGR 729 (782)
Q Consensus 682 ~~~~l~~~~~~~-~~~v~~~e~~v~---~g~~~~~~~~~~~------~~DLivvG~~g 729 (782)
-.+++..+..+. .-.+.+....|. .+.+++..++..+ ++|+||++|+|
T Consensus 28 ~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 28 IQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred HHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC
Confidence 446666666652 233444444452 3566777776664 38999999999
No 200
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=26.99 E-value=1e+02 Score=30.34 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=27.2
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhcCCCeEEEE
Q 003979 612 KRVCIIFFGGPDDRRALDLGGRMAENPGGNVTL 644 (782)
Q Consensus 612 ~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~v 644 (782)
+||++.+-|+..+-.+.++..++.+. |.++++
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~~~-g~~V~v 33 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLTKR-GYQVTV 33 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHHC-CCEEEE
Confidence 68999999999999999999999764 766554
No 201
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=26.90 E-value=7.1e+02 Score=25.59 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccc
Q 003979 347 AWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGL 392 (782)
Q Consensus 347 ~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~ 392 (782)
.|.-++.-+++..+.-+.+++..++++|.+.. +.. .|.||..
T Consensus 92 ~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~--~~~--Sl~pKSV 133 (232)
T PRK04288 92 YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA--VMA--SMLPQAA 133 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HHhhHhh
Confidence 45545555556666777888888889988743 222 2456664
No 202
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=26.74 E-value=1.5e+02 Score=30.83 Aligned_cols=18 Identities=11% Similarity=-0.136 Sum_probs=8.5
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 003979 626 RALDLGGRMAENPGGNVT 643 (782)
Q Consensus 626 ~al~~a~~la~~~~~~l~ 643 (782)
+.++.-.+++...++++.
T Consensus 15 ~i~~~~~~lag~~~~rI~ 32 (250)
T TIGR02069 15 EILREFVSRAGGEDAIIV 32 (250)
T ss_pred HHHHHHHHHhCCCCceEE
Confidence 344455555544444444
No 203
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=26.18 E-value=3.5e+02 Score=26.21 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=21.7
Q ss_pred CCcchHHHHHHHHHHhcCCCeEEEEEEee
Q 003979 620 GGPDDRRALDLGGRMAENPGGNVTLVRFI 648 (782)
Q Consensus 620 g~~~~~~al~~a~~la~~~~~~l~vl~v~ 648 (782)
-.+.+.|+++.|+++++ .+.+++++-+-
T Consensus 17 l~~~~~e~l~~A~~l~~-~~~~v~~v~~G 44 (181)
T cd01985 17 LNPLDLEAVEAALRLKE-YGGEVTALVIG 44 (181)
T ss_pred cCHhhHHHHHHHHHHhh-cCCeEEEEEEC
Confidence 45778899999999987 56677766653
No 204
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=25.84 E-value=1.1e+02 Score=34.44 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHh-c-CCcEEEEEEEecC--hHHHHHHhhcccC---CcEEEEccCC
Q 003979 680 ELDEAAVDDFMRK-W-GGSVEYEEKVMAN--VKDEVLKIGQIRD---YELVVVGKGR 729 (782)
Q Consensus 680 ~~~~~~l~~~~~~-~-~~~v~~~e~~v~~--g~~~~~~~~~~~~---~DLivvG~~g 729 (782)
....+.+..++.+ . -+-+.|...+=++ +.++++.++..+. +|.+||||+|
T Consensus 147 AairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG 203 (440)
T COG1570 147 AALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG 203 (440)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc
Confidence 3345666666666 2 2334454433222 5677777777665 9999999999
No 205
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=25.50 E-value=2.9e+02 Score=29.44 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=68.6
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccC-CCcchhhhcccchHHHHHHHhhcC--CCceEEEecC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRR-EGEEEIARVCHGWREVNRTVLQNA--PCSVAVLVDR 593 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~-~~~~~~~~~~~~~~~v~~~Vl~~a--pc~V~i~v~r 593 (782)
++..|-.+-..+ ..+...|++.|++.++.+|+.-+.+.-.. .| -..+....+...+++ .+||.+--|+
T Consensus 16 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g-------~~~~~~~~~~~a~~~~~~VPV~lHLDH 86 (288)
T TIGR00167 16 EGYAIPAFNINN--LETINAVLEAAAEEKSPVIIQFSNGAAKYIAG-------LGAISAMVKAMSEAYPYGVPVALHLDH 86 (288)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEECCcchhhccCC-------HHHHHHHHHHHHHhccCCCcEEEECCC
Confidence 344444555544 57899999999999999999877654322 22 115666777888899 8999998888
Q ss_pred CCCCCCCCcccCccccccceEEEeccCCcch-HHHHHHHH---HHhcCCCeEEE
Q 003979 594 GFGFGSDQTVAEPAATVLKRVCIIFFGGPDD-RRALDLGG---RMAENPGGNVT 643 (782)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~Ilv~~~g~~~~-~~al~~a~---~la~~~~~~l~ 643 (782)
+..+ +..... -+..+..| -+|||..+ +|-++..+ ++|+..|+.+.
T Consensus 87 g~~~--e~i~~a-i~~GftSV--MiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 135 (288)
T TIGR00167 87 GASE--EDCAQA-VKAGFSSV--MIDGSHEPFEENIELTKKVVERAHKMGVSVE 135 (288)
T ss_pred CCCH--HHHHHH-HHcCCCEE--EecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 7542 110000 00123333 57887544 45554444 44555665544
No 206
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=25.42 E-value=2e+02 Score=26.77 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=44.3
Q ss_pred CchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcC-CCceEEEecCCCC
Q 003979 531 STMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNA-PCSVAVLVDRGFG 596 (782)
Q Consensus 531 ~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~a-pc~V~i~v~r~~~ 596 (782)
....+.+.+++++.+++.||+|...+. +|..... ....+.+++++-++- ++||-. +|..+.
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~--~~~v~~f~~~L~~~~~~ipV~~-~DEr~T 98 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQ--ARRVRKFAEELKKRFPGIPVIL-VDERLT 98 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CC--HHHHHHHHHHHHHHH-TSEEEE-EECSCS
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHH--HHHHHHHHHHHHHhcCCCcEEE-ECCChh
Confidence 578999999999999999999986543 3332222 235677777887776 999866 676554
No 207
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=25.28 E-value=1.1e+02 Score=33.34 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHhhhHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Q 003979 309 FAVRLMKKIQDFVSGLLLPLY-FASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRES 380 (782)
Q Consensus 309 ~~~~l~~~l~~~~~~~f~plf-F~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~ 380 (782)
+.++-.+.++.++..+|.|.. |.-.|=.+.+..+.+ |+.+=+-+++.++.-.+..|+..+.++-|.+..
T Consensus 38 Lp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~---~wfiPVnv~Lt~~ig~liG~lv~~I~rppp~~~ 107 (408)
T KOG2722|consen 38 LPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQ---WWFIPVNVGLTFIIGSLIGWLVVKILRPPPQLR 107 (408)
T ss_pred CCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhheecCChhhc
Confidence 344555666777778999976 888999999888875 444444555555666677788889999887754
No 208
>COG3371 Predicted membrane protein [Function unknown]
Probab=25.26 E-value=4.6e+02 Score=25.75 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=41.1
Q ss_pred ccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhH
Q 003979 50 PLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAF 122 (782)
Q Consensus 50 rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~ 122 (782)
|.+-+.-.-+++.|+.+.- .| +||++. ..+.+.....-+++|.+.+-+.....+++.+...
T Consensus 73 k~~~~g~~ll~is~lfLaL--VG--------VFpEgt--~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~~~ 133 (181)
T COG3371 73 KIENYGGALLIISGLFLAL--VG--------VFPEGT--PPHVFVSILFFLLSFIAMLIYSIGRLLRNRSGFG 133 (181)
T ss_pred HhhhcchHHHHHHHHHHHh--ee--------eCCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 5555555566777777662 22 355432 4667788888889999999998888777554443
No 209
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=25.03 E-value=6e+02 Score=27.67 Aligned_cols=128 Identities=14% Similarity=0.059 Sum_probs=67.6
Q ss_pred CcchhhhcccchHHHHHHHhhcCCCceEEEecCCCCCCCCCcccCccccccceEEEeccCCcchHHHHHHHHHHhcCCCe
Q 003979 561 GEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDDRRALDLGGRMAENPGG 640 (782)
Q Consensus 561 ~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~~~~~~~~~~~~~~~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~ 640 (782)
|.++.. -.....+.+.|-+..+-||++ +=+..+ ...+|.+.+|++++++++.+. |
T Consensus 186 GslenR--~Rf~~eii~~ir~~~~~~v~v-Ris~~d--------------------~~~~G~~~~e~~~i~~~l~~~-g- 240 (337)
T PRK13523 186 GSPENR--YRFLREIIDAVKEVWDGPLFV-RISASD--------------------YHPGGLTVQDYVQYAKWMKEQ-G- 240 (337)
T ss_pred CCHHHH--HHHHHHHHHHHHHhcCCCeEE-Eecccc--------------------cCCCCCCHHHHHHHHHHHHHc-C-
Confidence 444433 336777888887776777776 112111 124577789999999999764 4
Q ss_pred EEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHHHHhcCCcEEEEEEEecChHHHHHHhhcccCC
Q 003979 641 NVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDY 720 (782)
Q Consensus 641 ~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~e~~v~~g~~~~~~~~~~~~~ 720 (782)
+..+++......... . .. ......++.++++...+-.+...- .+.++++..+.+++-. +
T Consensus 241 -vD~i~vs~g~~~~~~-------~------~~-----~~~~~~~~~~~ik~~~~ipVi~~G-~i~~~~~a~~~l~~g~-~ 299 (337)
T PRK13523 241 -VDLIDVSSGAVVPAR-------I------DV-----YPGYQVPFAEHIREHANIATGAVG-LITSGAQAEEILQNNR-A 299 (337)
T ss_pred -CCEEEeCCCCCCCCC-------C------CC-----CccccHHHHHHHHhhcCCcEEEeC-CCCCHHHHHHHHHcCC-C
Confidence 566666432211000 0 00 000122445556553222222221 1334555555565543 9
Q ss_pred cEEEEccCC-CCccc
Q 003979 721 ELVVVGKGR-FPSTI 734 (782)
Q Consensus 721 DLivvG~~g-~~~~~ 734 (782)
|+|.|||.- .++.+
T Consensus 300 D~V~~gR~~iadP~~ 314 (337)
T PRK13523 300 DLIFIGRELLRNPYF 314 (337)
T ss_pred ChHHhhHHHHhCccH
Confidence 999999986 35444
No 210
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=24.97 E-value=4.9e+02 Score=24.90 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHH
Q 003979 309 FAVRLMKKIQDF 320 (782)
Q Consensus 309 ~~~~l~~~l~~~ 320 (782)
...++++++|++
T Consensus 155 ikNkleN~iEsi 166 (188)
T KOG4050|consen 155 IKNKLENKIESI 166 (188)
T ss_pred HHHHHHHHHhhc
Confidence 345566666665
No 211
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=24.58 E-value=3.7e+02 Score=30.31 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhHHHHHHHhhccccc
Q 003979 315 KKIQDFVSGLLLPLYFASSGLKTDV 339 (782)
Q Consensus 315 ~~l~~~~~~~f~plfF~~~G~~id~ 339 (782)
..+...+++.+|.+||..+|+.+.-
T Consensus 60 ~~l~~wiNDgLMaiFFf~vGLEiKr 84 (423)
T PRK14853 60 LSLGTWAADGLLAIFFFVVGLELKR 84 (423)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHhH
Confidence 3455566889999999999999953
No 212
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=24.00 E-value=1.1e+02 Score=32.57 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=47.2
Q ss_pred hhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003979 292 AIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMAL 371 (782)
Q Consensus 292 ~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~ 371 (782)
.++-++++|+.+.+..|...+..+++..+....+.-+.+..++...+ .+.. ..+. .....++..+.-+...|..++
T Consensus 142 ~v~vPl~lG~~~r~~~p~~~~~~~~~~~~s~~~l~liv~~~~~~~~~--~i~~-~~~~-~~~~~~ll~~~~~~~g~~~a~ 217 (286)
T TIGR00841 142 AVLIPVSIGMLVKHKLPQIAKIILKVGLISVFLLSVIIAVVGGINVE--NLAT-IGPL-LLLVGILLPLAGFLLGYLLAK 217 (286)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhCchHHHHHHHHHHHHHHHhhHH--HHHH-hhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 35667778887775333222333334444332333233333333333 2322 1232 233334445556677778888
Q ss_pred HhCCChHHHHHHHHHH
Q 003979 372 LCMIPVRESLALGVLM 387 (782)
Q Consensus 372 ~~~~~~~~~~~lgl~m 387 (782)
.+|.+.+|+..+++..
T Consensus 218 ~~~l~~~~~~t~~~~~ 233 (286)
T TIGR00841 218 LAGLPWARCRTISIEV 233 (286)
T ss_pred HhCCCHhhheeeeeee
Confidence 8999887776655433
No 213
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=23.94 E-value=70 Score=28.16 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.4
Q ss_pred chHHHHHHHHHhcCccEEEecccc
Q 003979 532 TMHEDIFHVAEAKRVAMIVLPFHK 555 (782)
Q Consensus 532 ~~~~~I~~~a~~~~~dlIv~g~~~ 555 (782)
+-++++++.|+++++||+|+|-..
T Consensus 49 ~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 49 TDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp T-HHHHHHHHHHTTESEEEESSHH
T ss_pred CCHHHHHHHHHHcCCCEEEECChH
Confidence 448999999999999999999633
No 214
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=22.78 E-value=5.6e+02 Score=28.32 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=30.6
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQ 650 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~ 650 (782)
...++++.+.||-|+--|+.++.+ .|.+++.+++..+
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~~ 207 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFNE 207 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 357999999999999999887755 2788999999743
No 215
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.48 E-value=4.3e+02 Score=21.58 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003979 231 IWVLISGVAFVAFMLIVVRPIMDWVARQC 259 (782)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 259 (782)
++..++.++.+++.+|+.|..+...++.+
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk~N 36 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLKDN 36 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34445555556666778888777777766
No 216
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=22.39 E-value=1.7e+02 Score=31.54 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=43.4
Q ss_pred hHHHHHHHHhcCCCCchHHHHHHHHHHHHH-----hhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 003979 293 IFGAFVFGLTIPKGGEFAVRLMKKIQDFVS-----GLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTF 367 (782)
Q Consensus 293 ~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~-----~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~ 367 (782)
++-+|++|+.+.+..+ +..++.++... .+++-++-+..+..-+ +.+. .. .+.+.+++....-+..+|
T Consensus 170 vllP~~LG~~~r~~~~---~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~---~~~~-~~-~v~~~v~~~n~lg~~~gy 241 (319)
T COG0385 170 VLLPFVLGQLLRPLLP---KWVERLKKALPPVSVLSILLIVYAAFSAAVEN---GIWS-GL-LIFVAVILHNLLGLLLGY 241 (319)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHh---hhHH-HH-HHHHHHHHHHHHHHHHHH
Confidence 5668888888875332 23333332211 2333333333333322 2221 12 222333333445578899
Q ss_pred HHHHHhCCChHHHHHHH
Q 003979 368 VMALLCMIPVRESLALG 384 (782)
Q Consensus 368 l~~~~~~~~~~~~~~lg 384 (782)
..++.+|++..|+..+.
T Consensus 242 ~~ar~~g~~~a~~iti~ 258 (319)
T COG0385 242 FGARLLGFDKADEITIA 258 (319)
T ss_pred HHHHHhCCChhheeeEE
Confidence 99999999988765443
No 217
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=22.09 E-value=9.8e+02 Score=25.54 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=78.8
Q ss_pred chhhHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 003979 290 IHAIFGAFVFGLTIPK-GGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFV 368 (782)
Q Consensus 290 ~~~~lgaf~aGl~~~~-~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l 368 (782)
.++.+=|.++|+++.- +-+..+.+.+-++.+ .+...|+-.+.+|+.++...... .+.......+..++.-.+.++.
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~l-g~~~~plaLl~lG~~l~~~~~~~--~~~~~~~~~~~klil~P~i~~~ 257 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISIL-SGATTPMALFSLGLALSPRKIKL--GVRDAILALIVRFLVQPAVMAG 257 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHH-HHHHHHHHHHHHHHhhChhhhcc--ChHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777652 122345666677776 68899999999999998766643 3344444555566666666777
Q ss_pred HHHHhCCChHHHHHHHHHH--hhcccceeec-----cChhhHHHHHHHHHHHHHhhhhhh
Q 003979 369 MALLCMIPVRESLALGVLM--NTKGLVELIV-----LNDEMFAILVLMALFTTFMTTPMR 421 (782)
Q Consensus 369 ~~~~~~~~~~~~~~lgl~m--~~kG~~~lvl-----i~~~~~~~lv~~~~v~t~i~~pl~ 421 (782)
.+..++.+.... ....++ .|-+....++ .+++.-+..+....+.++++-|+.
T Consensus 258 ~~~~~~l~~~~~-~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~ 316 (321)
T TIGR00946 258 ISKLIGLRGLEL-SVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLF 316 (321)
T ss_pred HHHHhCCChHHH-HHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777765432 222211 2444444444 666666666666666666666654
No 218
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=22.08 E-value=3.2e+02 Score=28.93 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=65.4
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCC-CceEEEecCCC
Q 003979 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAP-CSVAVLVDRGF 595 (782)
Q Consensus 517 ~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ap-c~V~i~v~r~~ 595 (782)
++..|-.+-..+ ..+.+.+++.|++.++..|+.-+.+.-...+. ...+........++++ +||.+--|++.
T Consensus 14 ~~yav~Afn~~n--~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~------~~~~~~~~~~~a~~~~~vpv~lhlDH~~ 85 (282)
T TIGR01859 14 EGYAVGAFNFNN--LEWTQAILEAAEEENSPVIIQVSEGAIKYMGG------YKMAVAMVKTLIERMSIVPVALHLDHGS 85 (282)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHhCCCEEEEcCcchhhccCc------HHHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 334444554444 57899999999999999999877654322221 1146667788889999 89988657653
Q ss_pred CCCCCCcccCccccccceEEEeccCCcch-HHHHHHHHHH---hcCCCeE
Q 003979 596 GFGSDQTVAEPAATVLKRVCIIFFGGPDD-RRALDLGGRM---AENPGGN 641 (782)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~Ilv~~~g~~~~-~~al~~a~~l---a~~~~~~ 641 (782)
.. +.....- +..+.. +-+|++..+ +|-++.++++ ++..|+.
T Consensus 86 ~~--e~i~~ai-~~Gf~s--Vmid~s~l~~~eni~~t~~v~~~a~~~gv~ 130 (282)
T TIGR01859 86 SY--ESCIKAI-KAGFSS--VMIDGSHLPFEENLALTKKVVEIAHAKGVS 130 (282)
T ss_pred CH--HHHHHHH-HcCCCE--EEECCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 21 0000000 001222 456776544 3455555544 4666764
No 219
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=21.77 E-value=3.4e+02 Score=29.21 Aligned_cols=91 Identities=21% Similarity=0.238 Sum_probs=48.0
Q ss_pred hHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003979 293 IFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGI-EAWGLLVLVISMACAGKILGTFVMAL 371 (782)
Q Consensus 293 ~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~-~~~~~~~~~v~~~~~~K~i~~~l~~~ 371 (782)
++.+.++|...|.-...+..+. .|.. ....+.+.|...|++++...+... ..|...+......++.=.+.++....
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888886333222221 1122 223355677789999998888653 24555444444444444444455544
Q ss_pred HhCCChHHHHHHHHH
Q 003979 372 LCMIPVRESLALGVL 386 (782)
Q Consensus 372 ~~~~~~~~~~~lgl~ 386 (782)
..+....+.+..|+.
T Consensus 84 l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 84 LFPAFLPPELALGLL 98 (313)
T ss_pred HhhccCCHHHHHHHH
Confidence 443222334555553
No 220
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=21.51 E-value=6.5e+02 Score=23.27 Aligned_cols=106 Identities=20% Similarity=0.138 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCh---hHHHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHH
Q 003979 28 PLLIIQTTLVLLTSHCLAVLIKPLRQPK---VIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFL 104 (782)
Q Consensus 28 ~~~l~~i~lil~~~~~~~~l~~rl~~P~---iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~ 104 (782)
..++.|+++++.+.++..++.+-+++|- ++|.++-=.++. ++.++. +++ ....-..++++++.|+==.
T Consensus 5 ~~~~~q~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLLfllL~---~~iv~l--~wv----~~~a~~Ll~~m~llFVPa~ 75 (128)
T COG1380 5 MQILRQLAIILGFLFLGEWIASLLHLPLPGSIIGMVLLFLLLA---LKIVKL--EWV----ERGATFLLRNMALLFVPAG 75 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHH---hCCccH--HHH----HHHHHHHHHHHHHHHhcch
Confidence 4578899999988888888888787763 455443322222 222221 000 0112233455555554445
Q ss_pred HhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHH
Q 003979 105 VGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLF 142 (782)
Q Consensus 105 ~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 142 (782)
.|+=-..+.++.++.+.+.....+.++.+..+......
T Consensus 76 VgVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~ 113 (128)
T COG1380 76 VGVMNYFDLLAADGLPILVVIIISTLLVLLVTGWVVQL 113 (128)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56655666777777777666666666655544433333
No 221
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=21.49 E-value=1.2e+02 Score=34.78 Aligned_cols=123 Identities=25% Similarity=0.255 Sum_probs=69.8
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
..+||++.+.||-.+-++.+++.++.+. |++++++- + .. +++++...
T Consensus 69 ~~k~IllgVtGsIAayka~~lvr~L~k~-G~~V~Vvm--T-~s-----------------------------A~~fv~p~ 115 (475)
T PRK13982 69 ASKRVTLIIGGGIAAYKALDLIRRLKER-GAHVRCVL--T-KA-----------------------------AQQFVTPL 115 (475)
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHHHhC-cCEEEEEE--C-cC-----------------------------HHHHhhHH
Confidence 3579999999999999999999999764 77755442 1 11 12222222
Q ss_pred HHh-cCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCC--CccccccccccCCCCcccccchhhhhcCCCCCcccE
Q 003979 690 MRK-WGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRF--PSTIEAELADHQPENVGLGLIGNILASSDHGIFASV 766 (782)
Q Consensus 690 ~~~-~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~--~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sV 766 (782)
..+ ..+.-.|.+..-.+.......++-..|+|+++|.---. =+.+..|+.+ -. +++.+.. .++||
T Consensus 116 ~~~~ls~~~V~~d~~~~~~~~~~~Hi~la~~aD~~vVAPATANTIAKiA~GiAD-----nL---lt~v~La----~~~Pv 183 (475)
T PRK13982 116 TASALSGQRVYTDLFDPESEFDAGHIRLARDCDLIVVAPATADLMAKMANGLAD-----DL---ASAILLA----ANRPI 183 (475)
T ss_pred HHHHhcCCceEecCCCcccccCccchhhhhhcCEEEEeeCCHHHHHHHHccccC-----cH---HHHHHHh----cCCCE
Confidence 111 12233344432211111122333334589999987652 3456677776 23 3444443 57899
Q ss_pred EEEeecccccc
Q 003979 767 LVIQQHNVADI 777 (782)
Q Consensus 767 Lvvqq~~~~~~ 777 (782)
+++-.-...=|
T Consensus 184 liaPaMN~~M~ 194 (475)
T PRK13982 184 LLAPAMNPLMW 194 (475)
T ss_pred EEEEcCCHHHh
Confidence 99876554444
No 222
>PRK10481 hypothetical protein; Provisional
Probab=21.21 E-value=3.9e+02 Score=27.32 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhhccceEEEEeEEecCCCchHHHHHHHHH---hcCccEEEecccccccCCCcchhhhcccchHHHHHHH
Q 003979 503 HDQIVTSFEAYKQLRRVTIRHSTAISALSTMHEDIFHVAE---AKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTV 579 (782)
Q Consensus 503 ~~~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~a~---~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~V 579 (782)
.+++.+..++|.+. +..++ ....+||..-.+.+.+.++ +.++|.|++.+.+-.. ...+.+
T Consensus 139 ~~qi~~~~~kw~~~-G~~v~-~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~---------------~~~~~l 201 (224)
T PRK10481 139 EEQLAQQAQKWQVL-QKPPV-FALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ---------------RHRDLL 201 (224)
T ss_pred HHHHHHHHHHHHhc-CCcee-EeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH---------------HHHHHH
Confidence 45566666666665 33433 3444788766778888888 7899999999854321 223566
Q ss_pred hhcCCCceE
Q 003979 580 LQNAPCSVA 588 (782)
Q Consensus 580 l~~apc~V~ 588 (782)
-+....||.
T Consensus 202 e~~lg~PVI 210 (224)
T PRK10481 202 QKALDVPVL 210 (224)
T ss_pred HHHHCcCEE
Confidence 677777874
No 223
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=21.06 E-value=5.4e+02 Score=24.97 Aligned_cols=89 Identities=20% Similarity=0.233 Sum_probs=51.4
Q ss_pred hcchhhHHHHHHHHhcCCCC---chHHHHHHHHHHHHHhhhHHHHHHHhhcccccccccch--hhHHHHHHHHHHHHHHH
Q 003979 288 IGIHAIFGAFVFGLTIPKGG---EFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGI--EAWGLLVLVISMACAGK 362 (782)
Q Consensus 288 ~g~~~~lgaf~aGl~~~~~~---~~~~~l~~~l~~~~~~~f~plfF~~~G~~id~~~l~~~--~~~~~~~~~v~~~~~~K 362 (782)
+.+...-|+++.|+++.+-. +.. +......+.+++.+-+|...+|++.-...+... ..+...+ +-++.++.-
T Consensus 21 ~~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~-~~~~i~~~~ 97 (169)
T PF06826_consen 21 FSLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLL-LGVIITLVP 97 (169)
T ss_pred eeccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHH
Confidence 34445557777777776421 111 344555556778888999999999975444321 2233333 233333444
Q ss_pred HHHHHHHHH-HhCCChHH
Q 003979 363 ILGTFVMAL-LCMIPVRE 379 (782)
Q Consensus 363 ~i~~~l~~~-~~~~~~~~ 379 (782)
.+.++..++ ++|++.-.
T Consensus 98 ~~~~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 98 LLIALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHHHHcCCCHHH
Confidence 555566665 88888553
No 224
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=20.90 E-value=1.6e+02 Score=27.61 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=27.5
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 003979 613 RVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIG 649 (782)
Q Consensus 613 ~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~ 649 (782)
+|++.+.||.|+.-.+.++.+...+. .+++++++..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dt 36 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDT 36 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCC
Confidence 57899999999999888888766542 4677777754
No 225
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=20.75 E-value=5.5e+02 Score=26.16 Aligned_cols=37 Identities=11% Similarity=-0.048 Sum_probs=27.2
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecC
Q 003979 612 KRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQA 651 (782)
Q Consensus 612 ~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~ 651 (782)
.++++.+.||.|+.-.|.++.+..+ ..+.++.+.+..
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~~~~~---~~i~vv~vDTg~ 62 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLSSISE---PMIPVIFIDTLY 62 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhC---CCCCEEEEeCCC
Confidence 4688899999999999988888762 236667765543
No 226
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=20.73 E-value=7.6e+02 Score=23.76 Aligned_cols=16 Identities=31% Similarity=0.715 Sum_probs=12.9
Q ss_pred hhHHHHHHHHhhCccc
Q 003979 55 KVIAEILGGILLGPSA 70 (782)
Q Consensus 55 ~iv~~il~GillGp~~ 70 (782)
.-++.+++|+++||..
T Consensus 34 ~~i~~vlaavllGP~~ 49 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWY 49 (160)
T ss_pred hHHHHHHHHHHHchHH
Confidence 4577899999999943
No 227
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=20.38 E-value=1.4e+02 Score=33.81 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhcC-CcEEEEEEEecC---hHHHHHHhhcccC--CcEEEEccCC
Q 003979 681 LDEAAVDDFMRKWG-GSVEYEEKVMAN---VKDEVLKIGQIRD--YELVVVGKGR 729 (782)
Q Consensus 681 ~~~~~l~~~~~~~~-~~v~~~e~~v~~---g~~~~~~~~~~~~--~DLivvG~~g 729 (782)
..++++..+..+.. -.+.+....|.+ +.+++..++..+. +|+||+||+|
T Consensus 148 a~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGG 202 (438)
T PRK00286 148 AIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGG 202 (438)
T ss_pred HHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 34466666666522 244444444533 4677777877776 7999999999
No 228
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.30 E-value=3.9e+02 Score=27.36 Aligned_cols=138 Identities=22% Similarity=0.278 Sum_probs=71.9
Q ss_pred HHHHHHHhhCccccCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhccC--chhHHhccchhHHHHHHHHHHHHHH
Q 003979 58 AEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELD--LSSIRQNGKSAFKIALAGITLPFLF 135 (782)
Q Consensus 58 ~~il~GillGp~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~llF~~Gle~d--~~~l~~~~~~~~~i~~~~~~~~~~~ 135 (782)
=-++.|++++|..++.. +.++..+..+.-..+-.+++..++-..|...- ++++.+.+. ++.+-=.|=+-+.++
T Consensus 26 yA~iig~~~~~~~~~~~----~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~vGp~i~~i~~aGp-ALilQE~GnlGTill 100 (241)
T PF11299_consen 26 YALIIGMALGPQKLKPL----KKIISEKEMKFAGKLVGIALLPLIAKLGTTVGPNIPKILSAGP-ALILQEFGNLGTILL 100 (241)
T ss_pred HHHHHHHHhcchhhccc----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHhhH-HHHHHHhcchhhHHH
Confidence 34567888888766221 12233344555566666667666666666554 344445443 332322233345555
Q ss_pred HHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003979 136 GAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSL 213 (782)
Q Consensus 136 ~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~ 213 (782)
+.-++.+++..- + .+|++.|..==|-++-+-.+.| ++|+.||=+++.=++.-+++-+.+++...+
T Consensus 101 aLPiAllLGlkR----------E--aIGat~SI~REp~laiI~ekYG-ldSpEgrGVl~~Yi~GTvfGtiffsllas~ 165 (241)
T PF11299_consen 101 ALPIALLLGLKR----------E--AIGATFSIGREPNLAIISEKYG-LDSPEGRGVLGVYIIGTVFGTIFFSLLASL 165 (241)
T ss_pred HhHHHHHhcccH----------H--hhcceeecccCcceeeeehhcC-CCCccccceEEEeeehhhHHHHHHHHHHHH
Confidence 555555554322 1 1444444432222222223345 678888866666666666666666655553
Done!