Query 003979
Match_columns 782
No_of_seqs 309 out of 2156
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 10:16:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mt0_A Uncharacterized protein 99.9 3.5E-25 1.2E-29 235.4 22.1 263 433-773 8-278 (290)
2 3olq_A Universal stress protei 99.9 6E-25 2E-29 236.7 18.2 287 433-773 8-307 (319)
3 3cis_A Uncharacterized protein 99.9 1.4E-23 4.7E-28 225.1 21.7 279 431-772 18-307 (309)
4 3loq_A Universal stress protei 99.9 6.4E-24 2.2E-28 226.1 17.9 267 433-774 23-293 (294)
5 3ab8_A Putative uncharacterize 99.9 4.9E-22 1.7E-26 208.4 20.6 259 434-770 2-268 (268)
6 1zcd_A Na(+)/H(+) antiporter 1 99.8 1.9E-21 6.5E-26 209.3 11.7 292 88-423 58-382 (388)
7 3s3t_A Nucleotide-binding prot 99.5 5.2E-14 1.8E-18 132.6 8.3 139 610-770 4-146 (146)
8 3hgm_A Universal stress protei 99.5 1.1E-13 3.9E-18 130.4 9.2 140 611-769 2-147 (147)
9 3dlo_A Universal stress protei 99.4 2.6E-13 9E-18 129.6 10.3 128 610-770 23-155 (155)
10 3idf_A USP-like protein; unive 99.4 5.6E-13 1.9E-17 124.2 12.4 134 611-770 1-138 (138)
11 3tnj_A Universal stress protei 99.4 2.5E-13 8.6E-18 128.6 9.7 143 610-772 5-148 (150)
12 1tq8_A Hypothetical protein RV 99.4 2.6E-13 8.9E-18 130.8 9.8 139 610-773 16-160 (163)
13 1mjh_A Protein (ATP-binding do 99.4 8.3E-13 2.8E-17 126.8 13.1 147 610-772 4-160 (162)
14 2z08_A Universal stress protei 99.4 3.9E-13 1.3E-17 125.3 10.1 135 611-770 2-137 (137)
15 3fg9_A Protein of universal st 99.4 3.9E-13 1.3E-17 128.3 8.3 135 610-770 14-156 (156)
16 2dum_A Hypothetical protein PH 99.4 1.3E-12 4.4E-17 126.5 12.0 149 610-773 4-158 (170)
17 3fdx_A Putative filament prote 99.4 1.5E-12 5E-17 122.1 10.0 138 612-770 2-143 (143)
18 3s3t_A Nucleotide-binding prot 99.4 2E-12 6.8E-17 121.6 10.2 133 433-590 6-145 (146)
19 1mjh_A Protein (ATP-binding do 99.3 9.6E-12 3.3E-16 119.3 14.6 140 433-590 6-157 (162)
20 3fdx_A Putative filament prote 99.3 3.6E-12 1.2E-16 119.4 10.6 136 433-590 2-142 (143)
21 3dlo_A Universal stress protei 99.3 4.8E-12 1.6E-16 120.8 10.2 130 432-590 24-154 (155)
22 3hgm_A Universal stress protei 99.3 1.5E-12 5.2E-17 122.5 6.6 138 434-590 4-147 (147)
23 2gm3_A Unknown protein; AT3G01 99.3 5E-12 1.7E-16 123.1 9.2 148 610-773 4-165 (175)
24 2z08_A Universal stress protei 99.3 4.9E-12 1.7E-16 117.7 8.4 133 433-590 3-136 (137)
25 2dum_A Hypothetical protein PH 99.3 1.5E-11 5.2E-16 118.9 12.2 143 433-592 6-156 (170)
26 1tq8_A Hypothetical protein RV 99.3 8.5E-12 2.9E-16 120.1 9.5 138 432-591 17-157 (163)
27 3tnj_A Universal stress protei 99.3 6.5E-12 2.2E-16 118.7 7.9 140 433-592 7-147 (150)
28 3fg9_A Protein of universal st 99.3 5.5E-12 1.9E-16 120.2 7.1 134 432-590 15-155 (156)
29 1jmv_A USPA, universal stress 99.3 1.7E-11 5.9E-16 114.5 10.4 137 611-772 2-139 (141)
30 1jmv_A USPA, universal stress 99.2 2.9E-11 1E-15 112.9 11.0 132 433-592 3-138 (141)
31 3idf_A USP-like protein; unive 99.2 2.1E-11 7.1E-16 113.5 9.5 130 434-590 3-137 (138)
32 2gm3_A Unknown protein; AT3G01 99.2 4.9E-11 1.7E-15 116.0 12.3 142 432-593 5-164 (175)
33 3ab8_A Putative uncharacterize 99.1 8.8E-11 3E-15 122.4 9.7 144 612-773 1-151 (268)
34 3olq_A Universal stress protei 99.1 1.1E-10 3.7E-15 125.0 9.3 144 610-773 6-152 (319)
35 3loq_A Universal stress protei 99.1 3.8E-11 1.3E-15 127.1 5.5 140 610-773 21-164 (294)
36 1q77_A Hypothetical protein AQ 99.1 3.2E-10 1.1E-14 105.4 10.0 129 610-770 3-138 (138)
37 3cis_A Uncharacterized protein 99.1 1.3E-10 4.3E-15 124.0 7.3 139 610-773 18-163 (309)
38 3mt0_A Uncharacterized protein 99.1 3.7E-10 1.3E-14 119.2 10.7 122 610-772 6-129 (290)
39 1q77_A Hypothetical protein AQ 98.9 4.2E-09 1.4E-13 97.7 10.9 127 433-590 5-137 (138)
40 3zux_A Transporter, ASBTNM; tr 97.2 0.076 2.6E-06 56.3 24.9 109 93-215 44-156 (332)
41 3g40_A Na-K-CL cotransporter; 95.7 0.24 8.2E-06 50.5 15.7 217 434-729 22-254 (294)
42 3a2k_A TRNA(Ile)-lysidine synt 67.3 17 0.00059 40.0 9.6 40 611-650 18-57 (464)
43 3zux_A Transporter, ASBTNM; tr 54.4 83 0.0029 32.7 11.7 99 323-423 46-153 (332)
44 1zun_A Sulfate adenylyltransfe 52.3 21 0.00072 37.2 6.6 40 611-650 46-85 (325)
45 1sur_A PAPS reductase; assimil 51.1 52 0.0018 31.6 8.9 34 612-649 45-78 (215)
46 1efp_B ETF, protein (electron 49.3 24 0.00084 35.2 6.2 33 616-649 31-65 (252)
47 1ni5_A Putative cell cycle pro 48.5 30 0.001 37.7 7.3 39 611-649 13-52 (433)
48 1efv_B Electron transfer flavo 47.8 33 0.0011 34.4 6.9 33 616-649 34-68 (255)
49 1wy5_A TILS, hypothetical UPF0 46.7 30 0.001 35.8 6.7 40 611-650 24-64 (317)
50 1o97_C Electron transferring f 45.2 27 0.00093 35.2 5.9 34 616-649 31-66 (264)
51 1iv0_A Hypothetical protein; r 45.1 50 0.0017 27.7 6.6 59 531-595 37-95 (98)
52 2oq2_A Phosphoadenosine phosph 43.4 36 0.0012 34.1 6.5 39 611-650 41-79 (261)
53 2l0e_A Sodium/hydrogen exchang 41.4 7.4 0.00025 25.8 0.6 25 159-183 6-30 (33)
54 2k3c_A TMIX peptide; membrane 37.8 0.65 2.2E-05 30.9 -5.0 27 280-306 5-31 (33)
55 3gxq_A Putative regulator of t 34.6 29 0.00099 24.0 2.7 25 521-547 12-36 (54)
56 2wsi_A FAD synthetase; transfe 30.9 89 0.0031 32.0 7.2 94 612-733 54-171 (306)
57 1z41_A YQJM, probable NADH-dep 24.4 5.7E+02 0.019 26.2 12.2 146 538-729 150-310 (338)
58 1twd_A Copper homeostasis prot 23.3 3.4E+02 0.012 26.9 9.3 48 538-594 14-62 (256)
59 3ih5_A Electron transfer flavo 20.9 1.1E+02 0.0037 29.6 5.3 38 612-649 4-46 (217)
No 1
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.93 E-value=3.5e-25 Score=235.38 Aligned_cols=263 Identities=12% Similarity=0.092 Sum_probs=189.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEA 512 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 512 (782)
-|||+|+|+++....+++.+..++. +.+..++++|+++ +. ...+.+.+..+.
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~--~~~a~l~ll~v~~-~~-------------------------~~~~~l~~~~~~ 59 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAG--VTQSHLHLLVCEK-RR-------------------------DHSAALNDLAQE 59 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHH--HHCCEEEEEEECS-SS-------------------------CCHHHHHHHHHH
T ss_pred ceEEEEeCCCccchHHHHHHHHHHH--hcCCeEEEEEeeC-cH-------------------------HHHHHHHHHHHH
Confidence 4799999999999999999988874 3567899999986 10 011222222222
Q ss_pred HhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEec
Q 003979 513 YKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVD 592 (782)
Q Consensus 513 ~~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~ 592 (782)
+. ..++++++..... ++..+.|++.|++.++||||||+|++.+.. +..+|++.+++++++||||+++.
T Consensus 60 ~~-~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~--------~~~~gs~~~~vl~~~~~PVlvv~- 127 (290)
T 3mt0_A 60 LR-EEGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLK--------KAILTPDDWKLLRFAPCPVLMTK- 127 (290)
T ss_dssp HH-HTTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTS--------TTSCCHHHHHHHHHCSSCEEEEC-
T ss_pred Hh-hCCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchh--------hcccCHHHHHHHhcCCCCEEEec-
Confidence 32 3556777766533 578999999999999999999999887655 45899999999999999999962
Q ss_pred CCCCCCCCCcccCccccccceEEEeccCCcc-------hHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCC
Q 003979 593 RGFGFGSDQTVAEPAATVLKRVCIIFFGGPD-------DRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTS 665 (782)
Q Consensus 593 r~~~~~~~~~~~~~~~~~~~~Ilv~~~g~~~-------~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~ 665 (782)
.+.. . .+++|++|+||+++ ++.|+++|.++|+..+++++++|+.++....... +
T Consensus 128 ~~~~-------~-----~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~-----~-- 188 (290)
T 3mt0_A 128 TARP-------W-----TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSAD-----P-- 188 (290)
T ss_dssp CCSC-------S-----TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC----------------
T ss_pred CCCC-------C-----CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccC-----c--
Confidence 2211 0 36899999999998 8999999999999999999999999754321000 0
Q ss_pred CCcccCCCCcchhhhhHHHHHHHHHHhcC-CcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCC
Q 003979 666 DISTENGNSFSRERELDEAAVDDFMRKWG-GSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPE 744 (782)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e 744 (782)
.. . ..+..++..++.++++..+.+ ..+. .....+++.+.+...++..++||||||+|| ++|+.+
T Consensus 189 ---~~-~-~~~~~~~~~~~~l~~~~~~~g~~~~~-~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g-----~~~~~~---- 253 (290)
T 3mt0_A 189 ---TF-Q-LSETIEARYREACRTFQAEYGFSDEQ-LHIEEGPADVLIPRTAQKLDAVVTVIGTVA-----RTGLSG---- 253 (290)
T ss_dssp ---CH-H-HHHHHHHHHHHHHHHHHHHHTCCTTT-EEEEESCHHHHHHHHHHHHTCSEEEEECCS-----SCCGGG----
T ss_pred ---hh-H-HHHHHHHHHHHHHHHHHHHcCCCcce-EEEeccCHHHHHHHHHHhcCCCEEEECCCC-----CcCCcc----
Confidence 00 0 001123444566666655421 1111 122345677777766666669999999999 999999
Q ss_pred CcccccchhhhhcCCCCCcccEEEEeecc
Q 003979 745 NVGLGLIGNILASSDHGIFASVLVIQQHN 773 (782)
Q Consensus 745 ~~~LG~vgd~l~s~d~~~~~sVLvvqq~~ 773 (782)
..+|++++.++++ ++||||||+.+.
T Consensus 254 -~~~Gsv~~~vl~~---~~~pVLvv~~~~ 278 (290)
T 3mt0_A 254 -ALIGNTAEVVLDT---LESDVLVLKPDD 278 (290)
T ss_dssp -CCSCHHHHHHHTT---CSSEEEEECCHH
T ss_pred -eecchHHHHHHhc---CCCCEEEECCCC
Confidence 4899999999999 999999998764
No 2
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.92 E-value=6e-25 Score=236.70 Aligned_cols=287 Identities=11% Similarity=0.089 Sum_probs=192.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEA 512 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 512 (782)
-|||||+|+++++..+++.+..++. +.+..++++|+++................. .. ....++..+.+++
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~l~~ 77 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQ--RNGGRIKAFLPVYDLSYDMTTLLSPDERNA----MR----KGVINQKTAWIKQ 77 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHH--HHCCEEEEEEEECCGGGGCTTTSCHHHHHH----HH----HHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHH--HcCCeEEEEEEecccchhhccccChhhHHH----HH----HHHHHHHHHHHHH
Confidence 4799999999999999999988874 356789999998632100000000000000 00 0011222223333
Q ss_pred Hhh---ccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEE
Q 003979 513 YKQ---LRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAV 589 (782)
Q Consensus 513 ~~~---~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i 589 (782)
+.+ ..++++++.+... ++..++|++.|++.++||||||+|++.+.. +..+|++.++|++++||||++
T Consensus 78 ~~~~~~~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~--------~~~~Gs~~~~vl~~~~~PVlv 147 (319)
T 3olq_A 78 QARYYLEAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLG--------SLIFTPLDWQLLRKCPAPVWM 147 (319)
T ss_dssp HHHHHHHTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CC--------SCBCCHHHHHHHHHCSSCEEE
T ss_pred HHHHHhhcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhh--------cccccccHHHHHhcCCCCEEE
Confidence 322 2567777776532 688999999999999999999999987655 447999999999999999999
Q ss_pred EecCCCCCCCCCcccCccccccceEEEeccCCcc-------hHHHHHHHHHHhcCC--CeEEEEEEeeecCccccccccc
Q 003979 590 LVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPD-------DRRALDLGGRMAENP--GGNVTLVRFIGQASRAATSSIA 660 (782)
Q Consensus 590 ~v~r~~~~~~~~~~~~~~~~~~~~Ilv~~~g~~~-------~~~al~~a~~la~~~--~~~l~vl~v~~~~~~~~~~~~~ 660 (782)
+.++... .+++|++++||+++ ++.|+++|.++++.. +++++++|+.++........
T Consensus 148 v~~~~~~-------------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~-- 212 (319)
T 3olq_A 148 VKDKEWP-------------EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIE-- 212 (319)
T ss_dssp EESSCCC-------------TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTT--
T ss_pred ecCcccc-------------cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhcc--
Confidence 7433211 47899999999995 599999999999988 99999999997643211000
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHHHHHHhcC-CcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCcccccccc
Q 003979 661 ERPTSDISTENGNSFSRERELDEAAVDDFMRKWG-GSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELA 739 (782)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~ 739 (782)
.+.. ..+. ..+..++..++.++++..+.+ ..+. .....+++.+.+...++..++||||||+|| ++|+.
T Consensus 213 -~~~~---~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~-~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g-----~~~~~ 281 (319)
T 3olq_A 213 -LPDF---DPNL-YNNALRGQHLIAMKELRQKFSIPEEK-THVKEGLPEQVIPQVCEELNAGIVVLGILG-----RTGLS 281 (319)
T ss_dssp -CTTC---CHHH-HHHHHHHHHHHHHHHHHHHTTCCGGG-EEEEESCHHHHHHHHHHHTTEEEEEEECCS-----CCSTH
T ss_pred -CCcc---cHHH-HHHHHHHHHHHHHHHHHHHhCCCccc-EEEecCCcHHHHHHHHHHhCCCEEEEeccC-----ccCCc
Confidence 0000 0000 001123344566666655422 1221 222345667777666666569999999999 99999
Q ss_pred ccCCCCcccccchhhhhcCCCCCcccEEEEeecc
Q 003979 740 DHQPENVGLGLIGNILASSDHGIFASVLVIQQHN 773 (782)
Q Consensus 740 ~~w~e~~~LG~vgd~l~s~d~~~~~sVLvvqq~~ 773 (782)
+ ..+|++++.++++ ++||||||+.+.
T Consensus 282 ~-----~~~Gsv~~~vl~~---~~~pVLvv~~~~ 307 (319)
T 3olq_A 282 A-----AFLGNTAEQLIDH---IKCDLLAIKPDG 307 (319)
T ss_dssp H-----HHHHHHHHHHHTT---CCSEEEEECCTT
T ss_pred c-----ccccHHHHHHHhh---CCCCEEEECCCC
Confidence 9 4899999999999 999999998875
No 3
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.91 E-value=1.4e-23 Score=225.15 Aligned_cols=279 Identities=11% Similarity=0.108 Sum_probs=185.5
Q ss_pred ccceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchh-hHHHhhhcCCCCccccccCCCchhHHHH-
Q 003979 431 DEFRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSI-LMVQKTRKNGVPFINRFRQGMSHDQIVT- 508 (782)
Q Consensus 431 ~e~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 508 (782)
...|||||+|++++...+++.+..++. +.+..++++|+++......+. ....+..+. .. ...++..+
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~l~~ 86 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAE--LRKIPLTLVHAVSPEVATWLEVPLPPGVLRW----QQ-----DHGRHLIDD 86 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHH--HHTCCEEEEEECCCCCCCTTCCCCCHHHHHH----HH-----HHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHH--hcCCcEEEEEEecCcccccccCCCCchhhHH----HH-----HHHHHHHHH
Confidence 346899999999999999998887773 346789999998722111000 000000000 00 11122222
Q ss_pred HHHHHhhc----cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCC
Q 003979 509 SFEAYKQL----RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAP 584 (782)
Q Consensus 509 ~~~~~~~~----~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ap 584 (782)
..+...+. .++++++.+.. ++..++|++.|+ ++||||||+|++++.. +..+||+.++|++++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~~--------~~~~Gs~~~~vl~~~~ 153 (309)
T 3cis_A 87 ALKVVEQASLRAGPPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRWP--------GRLLGSVSSGLLRHAH 153 (309)
T ss_dssp HHHHHHHHCSSSCCSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCCT--------TCCSCHHHHHHHHHCS
T ss_pred HHHHHHHhcccCCCceEEEEEec---CCHHHHHHHHhc--CCCEEEECCCCCcccc--------ccccCcHHHHHHHhCC
Confidence 22222221 25677666543 689999999986 8999999999887655 4489999999999999
Q ss_pred CceEEEecCCCCCCCCCcccCccccccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCC
Q 003979 585 CSVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPT 664 (782)
Q Consensus 585 c~V~i~v~r~~~~~~~~~~~~~~~~~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~ 664 (782)
|||+++..+... .... ..++|++++||++.++.|+++|.++|+..+++++++|+.++......
T Consensus 154 ~PVlvv~~~~~~------~~~~---~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-------- 216 (309)
T 3cis_A 154 CPVVIIHDEDSV------MPHP---QQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEW-------- 216 (309)
T ss_dssp SCEEEECTTCCC------SCSS---CCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTC--------
T ss_pred CCEEEEcCCccc------CCCC---CCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCC--------
Confidence 999997332210 0112 46799999999999999999999999999999999999875322100
Q ss_pred CCCcccCCCCcchhhhhHHHHHHHHHHh-----cCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCcccccccc
Q 003979 665 SDISTENGNSFSRERELDEAAVDDFMRK-----WGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELA 739 (782)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~ 739 (782)
.... .+..++..++.+++...+ .+-.+.+ ....+++.+.+...++ ++||||||++| ++++.
T Consensus 217 ----~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~g~~~~~I~~~a~--~adliV~G~~~-----~~~~~ 282 (309)
T 3cis_A 217 ----PGID--WPATQSMAEQVLAERLAGWQERYPNVAITR-VVVRDQPARQLVQRSE--EAQLVVVGSRG-----RGGYA 282 (309)
T ss_dssp ----SSCC--HHHHHHHHHHHHHHHHTTHHHHCTTSCEEE-EEESSCHHHHHHHHHT--TCSEEEEESSC-----SSCCT
T ss_pred ----Cccc--HHHHHHHHHHHHHHHHHHHHhhCCCCcEEE-EEEcCCHHHHHHHhhC--CCCEEEECCCC-----CCCcc
Confidence 0000 011223334445444332 1222322 2333446666666665 59999999999 89999
Q ss_pred ccCCCCcccccchhhhhcCCCCCcccEEEEeec
Q 003979 740 DHQPENVGLGLIGNILASSDHGIFASVLVIQQH 772 (782)
Q Consensus 740 ~~w~e~~~LG~vgd~l~s~d~~~~~sVLvvqq~ 772 (782)
+ ..+|++++.++++ ++||||||+.+
T Consensus 283 ~-----~l~Gsv~~~vl~~---~~~pVlvv~~~ 307 (309)
T 3cis_A 283 G-----MLVGSVGETVAQL---ARTPVIVARES 307 (309)
T ss_dssp T-----CSSCHHHHHHHHH---CSSCEEEECC-
T ss_pred c-----cccCcHHHHHHhc---CCCCEEEeCCC
Confidence 9 4899999999999 99999999864
No 4
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.91 E-value=6.4e-24 Score=226.07 Aligned_cols=267 Identities=10% Similarity=0.080 Sum_probs=186.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEA 512 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 512 (782)
-|||||+|+++++..+++.+..++. +.+..++++|+++.+...... .........+ ...++..+.+++
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~l~~ 90 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKK--VGVEEIGVLFVINLTKLSTVS-----GGIDIDHYID-----EMSEKAEEVLPE 90 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHH--TTCCEEEEECCEECTTC----------CCCTTHHHH-----HHHHHHHHHHHH
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHh--hcCCEEEEEEEecCccccccc-----ccccHHHHHH-----HHHHHHHHHHHH
Confidence 3899999999999999999888874 467899999999865422110 0000000000 111222223333
Q ss_pred Hh---hccceEEEE-eEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceE
Q 003979 513 YK---QLRRVTIRH-STAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVA 588 (782)
Q Consensus 513 ~~---~~~~v~v~~-~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~ 588 (782)
+. +..++++++ .+. ..++..++| .+++.++||||||+|++.+.. +..+||+.++|++++||||+
T Consensus 91 ~~~~~~~~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~--------~~~~Gs~~~~vl~~~~~PVl 158 (294)
T 3loq_A 91 VAQKIEAAGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKFK--------KILLGSVSEGVLHDSKVPVY 158 (294)
T ss_dssp HHHHHHHTTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHHH--------HHHHCCHHHHHHHHCSSCEE
T ss_pred HHHHHHHcCCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCcccc--------ceeeccHHHHHHhcCCCCEE
Confidence 32 225677776 443 125789999 999999999999999876543 34789999999999999999
Q ss_pred EEecCCCCCCCCCcccCccccccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCc
Q 003979 589 VLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDIS 668 (782)
Q Consensus 589 i~v~r~~~~~~~~~~~~~~~~~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~ 668 (782)
++. ++.. ... ..++|++++||++.+++|+++|.++++..+++++++++.++..
T Consensus 159 vv~-~~~~-------~~~---~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~---------------- 211 (294)
T 3loq_A 159 IFK-HDMV-------VNS---LFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD---------------- 211 (294)
T ss_dssp EEC-CCTT-------TTC---TTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------------
T ss_pred Eec-Cccc-------cCc---cCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------------
Confidence 963 2211 112 5789999999999999999999999999999999999987532
Q ss_pred ccCCCCcchhhhhHHHHHHHHHHhcCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCccc
Q 003979 669 TENGNSFSRERELDEAAVDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGL 748 (782)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~L 748 (782)
.++..++..+.+... +-.+.+ ....+++.+.+...++..++||+|||+++ ++++.+ ..+
T Consensus 212 ---------~~~~l~~~~~~l~~~-~~~~~~-~~~~g~~~~~I~~~a~~~~~dLlV~G~~~-----~~~~~~-----~~~ 270 (294)
T 3loq_A 212 ---------KTADLRVMEEVIGAE-GIEVHV-HIESGTPHKAILAKREEINATTIFMGSRG-----AGSVMT-----MIL 270 (294)
T ss_dssp ---------CHHHHHHHHHHHHHT-TCCEEE-EEECSCHHHHHHHHHHHTTCSEEEEECCC-----CSCHHH-----HHH
T ss_pred ---------HHHHHHHHHHHHHHc-CCcEEE-EEecCCHHHHHHHHHHhcCcCEEEEeCCC-----CCCccc-----eee
Confidence 111122333333332 222322 23334566666666666569999999999 999999 489
Q ss_pred ccchhhhhcCCCCCcccEEEEeeccc
Q 003979 749 GLIGNILASSDHGIFASVLVIQQHNV 774 (782)
Q Consensus 749 G~vgd~l~s~d~~~~~sVLvvqq~~~ 774 (782)
|++++.++++ ++||||+|++...
T Consensus 271 Gs~~~~vl~~---~~~pvLvv~~~~~ 293 (294)
T 3loq_A 271 GSTSESVIRR---SPVPVFVCKRGDD 293 (294)
T ss_dssp HCHHHHHHHH---CSSCEEEECSCTT
T ss_pred CcHHHHHHhc---CCCCEEEECCCCC
Confidence 9999999999 9999999988653
No 5
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.88 E-value=4.9e-22 Score=208.36 Aligned_cols=259 Identities=16% Similarity=0.107 Sum_probs=173.0
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcC-CCCcc---ccccCCCchhHHHHH
Q 003979 434 RIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKN-GVPFI---NRFRQGMSHDQIVTS 509 (782)
Q Consensus 434 rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~i~~~ 509 (782)
|||+|+|+++++..+++.+..++. +.+..++++|+++.+..... ...... ..... +........++..+.
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAY--KLSAPLTVLFVVDTRLARIP----ELLDFGALTVPVPVLRTELERALALRGEAV 75 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHH--HHTCCEEEEEEEEHHHHTHH----HHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHH--HhCCcEEEEEEeccCCcccc----cccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999888874 34678999999875321100 000000 00000 000000011222233
Q ss_pred HHHHhh---ccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccc-cCCCcchhhhcccchHHHHHHHhhcCCC
Q 003979 510 FEAYKQ---LRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQW-RREGEEEIARVCHGWREVNRTVLQNAPC 585 (782)
Q Consensus 510 ~~~~~~---~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~-~~~~~~~~~~~~~~~~~v~~~Vl~~apc 585 (782)
++++.+ ..++++++.+.. ++..+.|++. +.++||||||+|+++ +.. +..+||+.++|++++||
T Consensus 76 l~~~~~~~~~~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~~--------~~~~Gs~~~~v~~~a~~ 142 (268)
T 3ab8_A 76 LERVRQSALAAGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGDG--------FGGLGSTADRVLRASPV 142 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCTT--------CCSCCHHHHHHHHHCSS
T ss_pred HHHHHHHHHhCCCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCcccc--------ccccchhHHHHHHhCCC
Confidence 333322 245667666543 5889999998 999999999999886 655 45899999999999999
Q ss_pred ceEEEecCCCCCCCCCcccCccccccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCC
Q 003979 586 SVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTS 665 (782)
Q Consensus 586 ~V~i~v~r~~~~~~~~~~~~~~~~~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~ 665 (782)
||+++ .++.. ..++|++|+||++.++.|+++|.++++..+++++++|+.++...
T Consensus 143 PVlvv-~~~~~-------------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~~------------ 196 (268)
T 3ab8_A 143 PVLLA-PGEPV-------------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPAR------------ 196 (268)
T ss_dssp CEEEE-CSSCC-------------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHHH------------
T ss_pred CEEEE-CCCCC-------------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHHH------------
Confidence 99996 22211 35799999999999999999999999989999999999864211
Q ss_pred CCcccCCCCcchhhhhHHHHHHHHHHhcCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCC
Q 003979 666 DISTENGNSFSRERELDEAAVDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPEN 745 (782)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~ 745 (782)
.++..++..+.+.. .+-.+.+. ...+++.+.+...++. .||+|||+ |+.+
T Consensus 197 ------------~~~~l~~~~~~l~~-~~~~~~~~-~~~g~~~~~i~~~a~~--~dliV~G~---------~~~~----- 246 (268)
T 3ab8_A 197 ------------AEAWALEAEAYLRD-HGVEASAL-VLGGDAADHLLRLQGP--GDLLALGA---------PVRR----- 246 (268)
T ss_dssp ------------HHHHHHHHHHHHHH-TTCCEEEE-EECSCHHHHHHHHCCT--TEEEEEEC---------CCSC-----
T ss_pred ------------HHHHHHHHHHHHHH-cCCceEEE-EeCCChHHHHHHHHHh--CCEEEECC---------cccc-----
Confidence 12222333333333 22223222 2234455655555544 49999999 4556
Q ss_pred cccccchhhhhcCCCCCcccEEEEe
Q 003979 746 VGLGLIGNILASSDHGIFASVLVIQ 770 (782)
Q Consensus 746 ~~LG~vgd~l~s~d~~~~~sVLvvq 770 (782)
..+|++++.++++ ++||||||+
T Consensus 247 ~~~Gs~~~~vl~~---~~~pvlvv~ 268 (268)
T 3ab8_A 247 LVFGSTAERVIRN---AQGPVLTAR 268 (268)
T ss_dssp CSSCCHHHHHHHH---CSSCEEEEC
T ss_pred cEeccHHHHHHhc---CCCCEEEeC
Confidence 4899999999999 999999984
No 6
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.85 E-value=1.9e-21 Score=209.32 Aligned_cols=292 Identities=20% Similarity=0.226 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhH----Hhccc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHH
Q 003979 88 PILESLASVGLLFFLFLVGLELDLSSI----RQNGK--SAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIF 161 (782)
Q Consensus 88 ~~l~~l~~lgl~~llF~~Gle~d~~~l----~~~~~--~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 161 (782)
....-+.+-.++++||.+|+|+|.+.+ ++.+| .....++.|+++|+++.. .+.... ..+..
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~----~~~~~~---------~~~~~ 124 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL----AFNYAD---------PITRE 124 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GGCCSS---------TTHHH
T ss_pred cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHhcCC---------hhhhh
Confidence 456678889999999999999999877 55555 367788999999998842 222111 11344
Q ss_pred HHHHHhhccHHHHHHHHHHccc-cCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHH
Q 003979 162 MGVSLSITAFPVLARILADLKL-LTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAF 240 (782)
Q Consensus 162 l~~~~s~Ts~~vv~~il~el~l-~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
...+...|+.+....++..++. .++..++.+++.+++||+.+|++++++.. . +.+.. +... .+++
T Consensus 125 gw~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~-------~~~~~---~l~~-~~~~ 190 (388)
T 1zcd_A 125 GWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---N-------DLSMA---SLGV-AAVA 190 (388)
T ss_dssp HTSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---C-------CCCHH---HHHH-HHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---C-------CccHH---HHHH-HHHH
Confidence 5555667898888899998765 46677799999999999999999987642 1 12211 1111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCC----chHHHHHHH
Q 003979 241 VAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGG----EFAVRLMKK 316 (782)
Q Consensus 241 ~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~----~~~~~l~~~ 316 (782)
.+.. ++.+|. .. +....+..+ . +.+++.++..|+|+.+|+|++|+++|+.+ +..++++++
T Consensus 191 ~~~~---------~~l~r~-~v----~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~ 254 (388)
T 1zcd_A 191 IAVL---------AVLNLC-GA----RRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHV 254 (388)
T ss_dssp HHHH---------HHHHHT-TC----CCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHH
T ss_pred HHHH---------HHHHHh-cc----hhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHH
Confidence 1111 222333 11 222233333 2 24456779999999999999999999743 457889999
Q ss_pred HHHHHHhhhHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHH
Q 003979 317 IQDFVSGLLLPLY-FASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLC----------MIPVRESLALGV 385 (782)
Q Consensus 317 l~~~~~~~f~plf-F~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl 385 (782)
+++++..+++|+| |+..|.++|...+..... .....+++..+++|++|++..++.. |++|+|...+|+
T Consensus 255 l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~ 333 (388)
T 1zcd_A 255 LHPWVAYLILPLFAFANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGI 333 (388)
T ss_dssp HHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcCeeecccchhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHH
Confidence 9999989999999 999999999853321101 1122344556899999966666666 999999999999
Q ss_pred HHhhcccceeec----c-------ChhhHHHHHHHHHHHHHhhhhhhcc
Q 003979 386 LMNTKGLVELIV----L-------NDEMFAILVLMALFTTFMTTPMRQL 423 (782)
Q Consensus 386 ~m~~kG~~~lvl----i-------~~~~~~~lv~~~~v~t~i~~pl~~~ 423 (782)
+++.++++++++ + .++.+..+++++++++++.+.++++
T Consensus 334 L~gigftmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~ 382 (388)
T 1zcd_A 334 LCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRV 382 (388)
T ss_dssp HTTCCHHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTT
T ss_pred HhccchHHHHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 2 2445677767777666655555554
No 7
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.47 E-value=5.2e-14 Score=132.58 Aligned_cols=139 Identities=13% Similarity=0.111 Sum_probs=99.1
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
.+++|++|+||+++++.|+++|.++|+..+++++++|+.++........ ........+..++..++.++++
T Consensus 4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~ 74 (146)
T 3s3t_A 4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPAL---------DPVLSELLDAEAAHAKDAMRQR 74 (146)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGG---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccc---------ccccHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999998643211000 0000000012344555667776
Q ss_pred HHh-cCCcE-EEE-EEEecChHHHHHH-hhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCccc
Q 003979 690 MRK-WGGSV-EYE-EKVMANVKDEVLK-IGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFAS 765 (782)
Q Consensus 690 ~~~-~~~~v-~~~-e~~v~~g~~~~~~-~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~s 765 (782)
... ....+ .+. ....+++.+.+.. .++..++||||||+|| ++++.+ ..+|++++.++++ ++||
T Consensus 75 ~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~-----~~~~~~-----~~~Gs~~~~vl~~---~~~p 141 (146)
T 3s3t_A 75 QQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATG-----TNSPHR-----VAVGSTTSYVVDH---APCN 141 (146)
T ss_dssp HHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCC-----SSCTTT-----CSSCHHHHHHHHH---CSSE
T ss_pred HHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCC-----CCCcce-----EEEcchHHHHhcc---CCCC
Confidence 665 22223 222 2334456666666 6665569999999999 889998 4899999999999 9999
Q ss_pred EEEEe
Q 003979 766 VLVIQ 770 (782)
Q Consensus 766 VLvvq 770 (782)
||||+
T Consensus 142 VlvV~ 146 (146)
T 3s3t_A 142 VIVIR 146 (146)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 8
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.46 E-value=1.1e-13 Score=130.36 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=97.6
Q ss_pred cceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCc-ccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQAS-RAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
++||++|+||+++++.|+++|.++|+..+++++++|+.++.. ....... .+. ...+...+..++..++.++++
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~l~~~ 75 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSM--ARP----EQLDIPDDALKDYATEIAVQA 75 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSS--CCC----GGGCCCTTHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccc--cCh----hhhhhHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999997643 1110000 000 000001122345555666666
Q ss_pred HHh-cCCcEE----EEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcc
Q 003979 690 MRK-WGGSVE----YEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFA 764 (782)
Q Consensus 690 ~~~-~~~~v~----~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~ 764 (782)
... ....+. ......+++.+.+...++..++||||||+|| ++++.+ ..+|++++.++++ ++|
T Consensus 76 ~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-----~~~~~~-----~~~Gs~~~~vl~~---~~~ 142 (147)
T 3hgm_A 76 KTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQG-----TNGDKS-----LLLGSVAQRVAGS---AHC 142 (147)
T ss_dssp HHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSC-----TTCCSC-----CCCCHHHHHHHHH---CSS
T ss_pred HHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCC-----Cccccc-----eeeccHHHHHHhh---CCC
Confidence 554 111111 1333445677776666666569999999999 899998 4899999999999 999
Q ss_pred cEEEE
Q 003979 765 SVLVI 769 (782)
Q Consensus 765 sVLvv 769 (782)
|||||
T Consensus 143 pVlvV 147 (147)
T 3hgm_A 143 PVLVV 147 (147)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 99996
No 9
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.44 E-value=2.6e-13 Score=129.61 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=97.1
Q ss_pred ccceEEEeccC-CcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHH
Q 003979 610 VLKRVCIIFFG-GPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDD 688 (782)
Q Consensus 610 ~~~~Ilv~~~g-~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 688 (782)
.+++|++|+|| ++.++.|+++|.++|+..+++++++|+.++.... . +..++..++.+++
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~---------------~-----~~~~~~~~~~l~~ 82 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT---------------K-----DEDIIEAKETLSW 82 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS---------------C-----HHHHHHHHHHHHH
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc---------------c-----HHHHHHHHHHHHH
Confidence 47899999999 9999999999999999999999999999754210 0 1133445566666
Q ss_pred HHHh---cCCcEEEEEEE-ecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcc
Q 003979 689 FMRK---WGGSVEYEEKV-MANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFA 764 (782)
Q Consensus 689 ~~~~---~~~~v~~~e~~-v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~ 764 (782)
+... .+-.+...... .+++.+.+...++..++||||||+|| ++++.+ ..+|++++.++++ ++|
T Consensus 83 ~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g-----~~~~~~-----~~lGSv~~~vl~~---a~~ 149 (155)
T 3dlo_A 83 AVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRK-----RSPTGK-----LIFGSVARDVILK---ANK 149 (155)
T ss_dssp HHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCE-----ECTTSC-----EECCHHHHHHHHH---CSS
T ss_pred HHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCC-----CCCCCC-----EEeccHHHHHHHh---CCC
Confidence 5544 22233332222 24566777666666569999999999 888988 5899999999999 999
Q ss_pred cEEEEe
Q 003979 765 SVLVIQ 770 (782)
Q Consensus 765 sVLvvq 770 (782)
|||||+
T Consensus 150 PVLvVr 155 (155)
T 3dlo_A 150 PVICIK 155 (155)
T ss_dssp CEEEEC
T ss_pred CEEEeC
Confidence 999985
No 10
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.44 E-value=5.6e-13 Score=124.25 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=95.5
Q ss_pred cceEEEeccCCcchHHHHHHHHHHh-cCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhh-hhHHHHHHH
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMA-ENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRER-ELDEAAVDD 688 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la-~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 688 (782)
+++|++|+||+++++.|+++|.++| +..+++++++|+.++........ ....+ ..+..+ +..++.+++
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~l~~ 70 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAV---------LAAYD-EIEMKEEEKAKLLTQK 70 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHH---------HHHHH-HHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccc---------cCcHH-HHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999 99999999999998643211000 00000 001122 445566666
Q ss_pred HHHh-cCCcEEEE-EEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccE
Q 003979 689 FMRK-WGGSVEYE-EKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASV 766 (782)
Q Consensus 689 ~~~~-~~~~v~~~-e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sV 766 (782)
+... ....+.+. ....+++.+.+...++ ++||||||+|+ ++++.+ | . |++++.++++ ++|||
T Consensus 71 ~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~-----~~~~~~-~----~-Gs~~~~vl~~---~~~pV 134 (138)
T 3idf_A 71 FSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSE-----NSFLNK-I----F-ASHQDDFIQK---APIPV 134 (138)
T ss_dssp HHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCT-----TSTTSS-C----C-CCTTCHHHHH---CSSCE
T ss_pred HHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCC-----cchHHH-H----h-CcHHHHHHhc---CCCCE
Confidence 6655 22233222 2334557777777777 59999999999 889988 3 6 9999999999 99999
Q ss_pred EEEe
Q 003979 767 LVIQ 770 (782)
Q Consensus 767 Lvvq 770 (782)
|||+
T Consensus 135 lvv~ 138 (138)
T 3idf_A 135 LIVK 138 (138)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9984
No 11
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.43 E-value=2.5e-13 Score=128.57 Aligned_cols=143 Identities=15% Similarity=0.227 Sum_probs=91.5
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
.+++|++|+||+++++.|+++|.++|+..+++++++|+.++......... .... .......+..++..++.++++
T Consensus 5 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~l~~~ 79 (150)
T 3tnj_A 5 VYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYG---TAIP--LDTETTYDAMLDVEKQKLSQI 79 (150)
T ss_dssp CCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CT---TCCC--SSSCCCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccc---cccC--cCHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999976432100000 0000 000001122345556667776
Q ss_pred HHhcC-CcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEE
Q 003979 690 MRKWG-GSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLV 768 (782)
Q Consensus 690 ~~~~~-~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLv 768 (782)
..+.+ ..+. .....+++.+.+...++..++||||||+|| ++++.. .+|++++.++++ ++|||||
T Consensus 80 ~~~~~~~~~~-~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-----~~~~~~------~~Gs~~~~vl~~---~~~pVlv 144 (150)
T 3tnj_A 80 GNTLGIDPAH-RWLVWGEPREEIIRIAEQENVDLIVVGSHG-----RHGLAL------LLGSTANSVLHY---AKCDVLA 144 (150)
T ss_dssp HHHHTCCGGG-EEEEESCHHHHHHHHHHHTTCSEEEEEEC-------------------CCCHHHHHHHH---CSSEEEE
T ss_pred HHHcCCCcce-EEEecCCHHHHHHHHHHHcCCCEEEEecCC-----CCCcCe------EecchHHHHHHh---CCCCEEE
Confidence 65521 2111 223345677777766666669999999999 666543 799999999999 9999999
Q ss_pred Eeec
Q 003979 769 IQQH 772 (782)
Q Consensus 769 vqq~ 772 (782)
|+..
T Consensus 145 v~~~ 148 (150)
T 3tnj_A 145 VRLR 148 (150)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9865
No 12
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.43 E-value=2.6e-13 Score=130.79 Aligned_cols=139 Identities=15% Similarity=0.176 Sum_probs=94.4
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEE--EeeecCcc-cccccccCCCCCCCcccCCCCcchhhhhHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLV--RFIGQASR-AATSSIAERPTSDISTENGNSFSRERELDEAAV 686 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl--~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 686 (782)
.+++|++|+||++.++.|+++|.++|+ .+++++++ ++.++... .... . ....+ .+..++..++.+
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~------~----~~~~~-~~~~~~~~~~~l 83 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADI------L----KDESY-KVTGTAPIYEIL 83 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC-------------------------------CCTHHHHH
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccc------c----ccHHH-HHHHHHHHHHHH
Confidence 478999999999999999999999999 99999999 88764321 1000 0 00000 011334455666
Q ss_pred HHHHHh-cCCcEE-EE-EEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCc
Q 003979 687 DDFMRK-WGGSVE-YE-EKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIF 763 (782)
Q Consensus 687 ~~~~~~-~~~~v~-~~-e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~ 763 (782)
+++... ....+. +. ....+++.+.+...++..++||||||+|| ++++.+ ..+|++++.++++ ++
T Consensus 84 ~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g-----~~~~~~-----~~lGSva~~vl~~---a~ 150 (163)
T 1tq8_A 84 HDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVG-----LSTIAG-----RLLGSVPANVSRR---AK 150 (163)
T ss_dssp HHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCC-----CCSHHH-----HHTBBHHHHHHHH---TT
T ss_pred HHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCC-----CCcccc-----eeeccHHHHHHHh---CC
Confidence 666554 222222 22 23344566766666666669999999999 899999 5899999999999 99
Q ss_pred ccEEEEeecc
Q 003979 764 ASVLVIQQHN 773 (782)
Q Consensus 764 ~sVLvvqq~~ 773 (782)
||||||+...
T Consensus 151 ~PVlvV~~~~ 160 (163)
T 1tq8_A 151 VDVLIVHTTE 160 (163)
T ss_dssp CEEEEECCC-
T ss_pred CCEEEEeCCC
Confidence 9999998643
No 13
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.43 E-value=8.3e-13 Score=126.77 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=98.6
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecC-----cccccccccCCCCCCCccc---CCCCcchhhhh
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQA-----SRAATSSIAERPTSDISTE---NGNSFSREREL 681 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 681 (782)
.+++|++|+||+++++.|+++|.++|+..+++++++|+.++. ........ ..... ... .....+..++.
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~ 80 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLG--VAGLN-KSVEEFENELKNKLTEE 80 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC--------------------CHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCcccccccccccccc--ccccc-cchhhhHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999754 11000000 00000 000 00000112344
Q ss_pred HHHHHHHHHHh-cCCcEEEE-EEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCC
Q 003979 682 DEAAVDDFMRK-WGGSVEYE-EKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSD 759 (782)
Q Consensus 682 ~~~~l~~~~~~-~~~~v~~~-e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d 759 (782)
.++.++++..+ ....+.+. ....+++.+.+...++..++||||||+|| ++++.+ ..+|++++.++++
T Consensus 81 ~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g-----~~~~~~-----~~~GSv~~~vl~~- 149 (162)
T 1mjh_A 81 AKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHG-----KTNLKE-----ILLGSVTENVIKK- 149 (162)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCC-----SSCCTT-----CSSCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCC-----CCCccc-----eEecchHHHHHHh-
Confidence 55666666554 12223222 23345566777666666669999999999 889999 4899999999999
Q ss_pred CCCcccEEEEeec
Q 003979 760 HGIFASVLVIQQH 772 (782)
Q Consensus 760 ~~~~~sVLvvqq~ 772 (782)
++||||||+..
T Consensus 150 --~~~pVlvv~~~ 160 (162)
T 1mjh_A 150 --SNKPVLVVKRK 160 (162)
T ss_dssp --CCSCEEEECCC
T ss_pred --CCCCEEEEeCC
Confidence 99999999864
No 14
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.42 E-value=3.9e-13 Score=125.31 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=96.0
Q ss_pred cceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHHH
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDFM 690 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 690 (782)
+++|++|+||+++++.|+++|.++|+..+++++++|+.++..... . .. . .+. ..+..++..++.++++.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-~-----~~-~---~~~-~~~~~~~~~~~~l~~~~ 70 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYL-G-----EP-F---FEE-ALRRRLERAEGVLEEAR 70 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC-------------------------CHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccc-c-----cc-c---hHH-HHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999987432100 0 00 0 000 00123445667777766
Q ss_pred HhcCC-cEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEE
Q 003979 691 RKWGG-SVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVI 769 (782)
Q Consensus 691 ~~~~~-~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLvv 769 (782)
.+.+- .+.+. ...+++.+.+...++..++||||||+|| ++++.+ ..+|++++.++++ ++||||||
T Consensus 71 ~~~g~~~~~~~-~~~g~~~~~I~~~a~~~~~dliV~G~~~-----~~~~~~-----~~~Gs~~~~vl~~---~~~pVlvv 136 (137)
T 2z08_A 71 ALTGVPKEDAL-LLEGVPAEAILQAARAEKADLIVMGTRG-----LGALGS-----LFLGSQSQRVVAE---APCPVLLV 136 (137)
T ss_dssp HHHCCCGGGEE-EEESSHHHHHHHHHHHTTCSEEEEESSC-----TTCCSC-----SSSCHHHHHHHHH---CSSCEEEE
T ss_pred HHcCCCccEEE-EEecCHHHHHHHHHHHcCCCEEEECCCC-----Cchhhh-----hhhccHHHHHHhc---CCCCEEEe
Confidence 54221 23222 2345666777666666669999999999 889988 5899999999999 99999998
Q ss_pred e
Q 003979 770 Q 770 (782)
Q Consensus 770 q 770 (782)
+
T Consensus 137 ~ 137 (137)
T 2z08_A 137 R 137 (137)
T ss_dssp C
T ss_pred C
Confidence 5
No 15
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.39 E-value=3.9e-13 Score=128.30 Aligned_cols=135 Identities=20% Similarity=0.210 Sum_probs=95.2
Q ss_pred ccceEEEecc--CCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHH
Q 003979 610 VLKRVCIIFF--GGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVD 687 (782)
Q Consensus 610 ~~~~Ilv~~~--g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 687 (782)
.+++|++|+| |+++++.|+++|.++|+..+++++++|+.++....... .. .....+..++..++.++
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~l~ 82 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFD----------SL-TPSKIQAKRKHVEDVVA 82 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCC----------SS-HHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccc----------cC-CHHHHHHHHHHHHHHHH
Confidence 4789999999 99999999999999999999999999999764321100 00 00000123344556666
Q ss_pred HHHHh---cCC-cEEEEEEEe-cChHHHHHHh-hcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCC
Q 003979 688 DFMRK---WGG-SVEYEEKVM-ANVKDEVLKI-GQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHG 761 (782)
Q Consensus 688 ~~~~~---~~~-~v~~~e~~v-~~g~~~~~~~-~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~ 761 (782)
++..+ .+- .+.+. ... +++.+.+... ++..++||||||+|| ++|+++ .+|++++.++++
T Consensus 83 ~~~~~~~~~g~~~~~~~-v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g-----~~~~~~------~~Gs~~~~vl~~--- 147 (156)
T 3fg9_A 83 EYVQLAEQRGVNQVEPL-VYEGGDVDDVILEQVIPEFKPDLLVTGADT-----EFPHSK------IAGAIGPRLARK--- 147 (156)
T ss_dssp HHHHHHHHHTCSSEEEE-EEECSCHHHHHHHTHHHHHCCSEEEEETTC-----CCTTSS------SCSCHHHHHHHH---
T ss_pred HHHHHHHHcCCCceEEE-EEeCCCHHHHHHHHHHHhcCCCEEEECCCC-----CCccce------eecchHHHHHHh---
Confidence 66554 111 23222 233 5666766665 555569999999999 888855 699999999999
Q ss_pred CcccEEEEe
Q 003979 762 IFASVLVIQ 770 (782)
Q Consensus 762 ~~~sVLvvq 770 (782)
++||||||+
T Consensus 148 a~~PVlvV~ 156 (156)
T 3fg9_A 148 APISVIVVR 156 (156)
T ss_dssp CSSEEEEEC
T ss_pred CCCCEEEeC
Confidence 999999985
No 16
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.39 E-value=1.3e-12 Score=126.54 Aligned_cols=149 Identities=13% Similarity=0.051 Sum_probs=98.1
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCC--cccCCCCcchhhhhHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDI--STENGNSFSRERELDEAAVD 687 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ 687 (782)
.+++|++|+||+++++.|+++|.++|+..+++++++|+.++......... .+..+. +.......+..++..++.++
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDG--YSFFYDNAEIELKDIKEKLKEEASRKLQ 81 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC--------------CCTTSHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccc--cccccccccccHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999975432100000 000000 00000001123344556666
Q ss_pred HHHHh---cCCcEEE-EEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCc
Q 003979 688 DFMRK---WGGSVEY-EEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIF 763 (782)
Q Consensus 688 ~~~~~---~~~~v~~-~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~ 763 (782)
++..+ .+-.+.. .....+++.+.+...++..++||||||+|| ++++.+ ..+|++++.++++ ++
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g-----~~~~~~-----~~~Gsv~~~vl~~---~~ 148 (170)
T 2dum_A 82 EKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRG-----KLSLSH-----EFLGSTVMRVLRK---TK 148 (170)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCC-----CCC--T-----TCCCHHHHHHHHH---CS
T ss_pred HHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCC-----CCcccc-----ceechHHHHHHHh---CC
Confidence 65544 1222332 123345666766666666669999999999 888988 5899999999999 99
Q ss_pred ccEEEEeecc
Q 003979 764 ASVLVIQQHN 773 (782)
Q Consensus 764 ~sVLvvqq~~ 773 (782)
||||||+...
T Consensus 149 ~PVlvv~~~~ 158 (170)
T 2dum_A 149 KPVLIIKEVD 158 (170)
T ss_dssp SCEEEECCCC
T ss_pred CCEEEEccCC
Confidence 9999998653
No 17
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.36 E-value=1.5e-12 Score=122.12 Aligned_cols=138 Identities=16% Similarity=0.164 Sum_probs=90.1
Q ss_pred ceEEEeccCCcc--hHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 612 KRVCIIFFGGPD--DRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 612 ~~Ilv~~~g~~~--~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
++|++|+||+++ ++.|+++|.++|+..+++++++|+.++........ .......+. .++..+...+.++++
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~l~~~ 74 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLG-----MAYTAELPG--MDELREGSETQLKEI 74 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC---------------------C--HHHHHHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCccccccc-----ccccchhhh--HHHHHHHHHHHHHHH
Confidence 689999999999 99999999999999999999999997643210000 000000000 011222233344444
Q ss_pred HHhcC-CcEE-EEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEE
Q 003979 690 MRKWG-GSVE-YEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVL 767 (782)
Q Consensus 690 ~~~~~-~~v~-~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVL 767 (782)
..+.+ ..+. ......+++.+.+...++..++||||||+|+ +|+.+ ..+|++++.++++ ++||||
T Consensus 75 ~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~------~~~~~-----~~~Gs~~~~v~~~---~~~pVl 140 (143)
T 3fdx_A 75 AKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR------PDITT-----YLLGSNAAAVVRH---AECSVL 140 (143)
T ss_dssp HTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC------TTCCS-----CSSCHHHHHHHHH---CSSEEE
T ss_pred HHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC------CCCee-----eeeccHHHHHHHh---CCCCEE
Confidence 43321 2211 2223345677777777766669999999996 56777 4899999999999 999999
Q ss_pred EEe
Q 003979 768 VIQ 770 (782)
Q Consensus 768 vvq 770 (782)
||+
T Consensus 141 vv~ 143 (143)
T 3fdx_A 141 VVR 143 (143)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 18
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.35 E-value=2e-12 Score=121.64 Aligned_cols=133 Identities=12% Similarity=0.149 Sum_probs=95.1
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhh--HHHhhhcCCCCccccccCCCchhHHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSIL--MVQKTRKNGVPFINRFRQGMSHDQIVTSF 510 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 510 (782)
-|||+|+|+++++..+++.+..++. +.+..++++|+++.+....... ...+.. + ...++..+.+
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~l 71 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQ--RHQANLTALYVVDDSAYHTPALDPVLSELL-------D-----AEAAHAKDAM 71 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEEEECCCCCCGGGHHHHHHHH-------H-----HHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCccccccccccccHHHH-------H-----HHHHHHHHHH
Confidence 4799999999999999999888773 3567899999998754332211 001000 0 1112222333
Q ss_pred HHHh---hccce-EEEEeEEecCCCchHHHHHH-HHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCC
Q 003979 511 EAYK---QLRRV-TIRHSTAISALSTMHEDIFH-VAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPC 585 (782)
Q Consensus 511 ~~~~---~~~~v-~v~~~~~v~~~~~~~~~I~~-~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc 585 (782)
+++. +..++ .+++.+.. ++..+.|++ .|++.++||||||.|++++.. +..+||+.++|++++||
T Consensus 72 ~~~~~~~~~~g~~~~~~~~~~---g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~--------~~~~Gs~~~~vl~~~~~ 140 (146)
T 3s3t_A 72 RQRQQFVATTSAPNLKTEISY---GIPKHTIEDYAKQHPEIDLIVLGATGTNSPH--------RVAVGSTTSYVVDHAPC 140 (146)
T ss_dssp HHHHHHHTTSSCCCCEEEEEE---ECHHHHHHHHHHHSTTCCEEEEESCCSSCTT--------TCSSCHHHHHHHHHCSS
T ss_pred HHHHHHHHhcCCcceEEEEec---CChHHHHHHHHHhhcCCCEEEECCCCCCCcc--------eEEEcchHHHHhccCCC
Confidence 3332 22456 66666554 478999999 999999999999999987665 45899999999999999
Q ss_pred ceEEE
Q 003979 586 SVAVL 590 (782)
Q Consensus 586 ~V~i~ 590 (782)
||+++
T Consensus 141 pVlvV 145 (146)
T 3s3t_A 141 NVIVI 145 (146)
T ss_dssp EEEEE
T ss_pred CEEEe
Confidence 99986
No 19
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.34 E-value=9.6e-12 Score=119.26 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=93.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCC----CCchhhHHHh--h-hcCC--CCccccccCCCch
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTD----RSSSILMVQK--T-RKNG--VPFINRFRQGMSH 503 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~----r~~~~~~~~~--~-~~~~--~~~~~~~~~~~~~ 503 (782)
-|||+|+|+++++..+++.+..++ ++.+.+++++|+++... ...... ... . ..+. ..... ....
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~ 78 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFK--TLKAEEVILLHVIDEREIKKRDIFSLL-LGVAGLNKSVEEFENELK----NKLT 78 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTC--CSSCCEEEEEEEEEGGGTC------------------CHHHHHHHH----HHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHH--hhcCCeEEEEEEecCcccccccccccc-ccccccccchhhhHHHHH----HHHH
Confidence 479999999999999999888887 44678999999997530 000000 000 0 0000 00000 0111
Q ss_pred hHHHHHHHHHhh---ccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHh
Q 003979 504 DQIVTSFEAYKQ---LRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVL 580 (782)
Q Consensus 504 ~~i~~~~~~~~~---~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl 580 (782)
++..+.++++.+ ..++++++.+.. ++.++.|++.|++.++||||||.|++++.. +..+||+.++|+
T Consensus 79 ~~~~~~l~~~~~~~~~~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~--------~~~~GSv~~~vl 147 (162)
T 1mjh_A 79 EEAKNKMENIKKELEDVGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNLK--------EILLGSVTENVI 147 (162)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCCT--------TCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCcc--------ceEecchHHHHH
Confidence 222333333322 256777766543 588999999999999999999999987666 558999999999
Q ss_pred hcCCCceEEE
Q 003979 581 QNAPCSVAVL 590 (782)
Q Consensus 581 ~~apc~V~i~ 590 (782)
+++||||+|+
T Consensus 148 ~~~~~pVlvv 157 (162)
T 1mjh_A 148 KKSNKPVLVV 157 (162)
T ss_dssp HHCCSCEEEE
T ss_pred HhCCCCEEEE
Confidence 9999999997
No 20
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.33 E-value=3.6e-12 Score=119.41 Aligned_cols=136 Identities=12% Similarity=0.113 Sum_probs=92.0
Q ss_pred ceEEEEecCCCC--hhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHH
Q 003979 433 FRIQACVHGPEN--VPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSF 510 (782)
Q Consensus 433 ~rILvpv~~~~~--~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 510 (782)
-|||+|+|++++ +..+++.+..++. +.+.+++++|+++.+....... ...... ....+ ...++..+.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~--~~~~~~-~~~~~-----~~~~~~~~~l 71 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEAR--IDDAEVHFLTVIPSLPYYASLG--MAYTAE-LPGMD-----ELREGSETQL 71 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHH--HHTCEEEEEEEECC-------------------CHH-----HHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHH--hcCCeEEEEEEecCCccccccc--ccccch-hhhHH-----HHHHHHHHHH
Confidence 379999999999 9999998887773 3567899999998643221110 000000 00000 2234455555
Q ss_pred HHHhhc---cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCce
Q 003979 511 EAYKQL---RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSV 587 (782)
Q Consensus 511 ~~~~~~---~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V 587 (782)
+++.+. .++.+++.+.. ++..+.|++.|++.++||||||.|+ .+.. +..+||+.++|++++||||
T Consensus 72 ~~~~~~~~~~~~~v~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~-~~~~--------~~~~Gs~~~~v~~~~~~pV 139 (143)
T 3fdx_A 72 KEIAKKFSIPEDRMHFHVAE---GSPKDKILALAKSLPADLVIIASHR-PDIT--------TYLLGSNAAAVVRHAECSV 139 (143)
T ss_dssp HHHHTTSCCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEEESSC-TTCC--------SCSSCHHHHHHHHHCSSEE
T ss_pred HHHHHHcCCCCCceEEEEEe---cChHHHHHHHHHHhCCCEEEEeCCC-CCCe--------eeeeccHHHHHHHhCCCCE
Confidence 555544 23455665544 4889999999999999999999995 5444 4589999999999999999
Q ss_pred EEE
Q 003979 588 AVL 590 (782)
Q Consensus 588 ~i~ 590 (782)
+++
T Consensus 140 lvv 142 (143)
T 3fdx_A 140 LVV 142 (143)
T ss_dssp EEE
T ss_pred EEe
Confidence 986
No 21
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.31 E-value=4.8e-12 Score=120.79 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=93.0
Q ss_pred cceEEEEecC-CCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHH
Q 003979 432 EFRIQACVHG-PENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSF 510 (782)
Q Consensus 432 e~rILvpv~~-~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 510 (782)
-.|||+|+|+ ++.+..+++.+..++. ..+..++++|+++.+...... . . ...++..+.+
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~--~~~a~l~llhV~~~~~~~~~~-----~--------~-----~~~~~~l~~~ 83 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEAR--LRGVPVYVVHSLPGGGRTKDE-----D--------I-----IEAKETLSWA 83 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHH--HHTCCEEEEEEECCSTTSCHH-----H--------H-----HHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEEcCCCcccHH-----H--------H-----HHHHHHHHHH
Confidence 3489999999 9999999999888874 346789999999754321110 0 0 1112222222
Q ss_pred HHHhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEE
Q 003979 511 EAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVL 590 (782)
Q Consensus 511 ~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~ 590 (782)
.+..+..++.++..+.+ ..++..+.|++.|++.++||||||.|++.+.. +..+||+.++|++++||||+++
T Consensus 84 ~~~~~~~g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~--------~~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 84 VSIIRKEGAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPTG--------KLIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHHHHTTCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTTS--------CEECCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHhcCCCceEEEEe-cCCCHHHHHHHHHHHcCCCEEEECCCCCCCCC--------CEEeccHHHHHHHhCCCCEEEe
Confidence 22222244555544433 23689999999999999999999999987665 4489999999999999999986
No 22
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.31 E-value=1.5e-12 Score=122.51 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=91.5
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHHH
Q 003979 434 RIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAY 513 (782)
Q Consensus 434 rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 513 (782)
|||+|+|+++++..+++.+..++. +.+..++++|+++.+...... .........+.. .....++..+.++++
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~--~~~a~l~ll~v~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~l~~~ 75 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQ--LTGAELYILCVFKHHSLLEAS-----LSMARPEQLDIP-DDALKDYATEIAVQA 75 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHH--HHCCEEEEEEEECCHHHHHHT-----BSSCCCGGGCCC-TTHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCccccccc-----ccccChhhhhhH-HHHHHHHHHHHHHHH
Confidence 799999999999999999888774 346789999998753200000 000000000000 001112233333333
Q ss_pred h---hccceEE---EEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCce
Q 003979 514 K---QLRRVTI---RHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSV 587 (782)
Q Consensus 514 ~---~~~~v~v---~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V 587 (782)
. +..++++ ++.+.. ++..+.|++.|++.++||||||.|++++.. +..+||+.++|++++||||
T Consensus 76 ~~~~~~~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~--------~~~~Gs~~~~vl~~~~~pV 144 (147)
T 3hgm_A 76 KTRATELGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDK--------SLLLGSVAQRVAGSAHCPV 144 (147)
T ss_dssp HHHHHHTTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCS--------CCCCCHHHHHHHHHCSSCE
T ss_pred HHHHHhcCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCcccc--------ceeeccHHHHHHhhCCCCE
Confidence 2 2244544 555543 588999999999999999999999987766 5589999999999999999
Q ss_pred EEE
Q 003979 588 AVL 590 (782)
Q Consensus 588 ~i~ 590 (782)
+++
T Consensus 145 lvV 147 (147)
T 3hgm_A 145 LVV 147 (147)
T ss_dssp EEC
T ss_pred EEC
Confidence 873
No 23
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.29 E-value=5e-12 Score=123.07 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=87.2
Q ss_pred ccceEEEeccCCc---------chHHHHHHHHHHh-cC--CCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcch
Q 003979 610 VLKRVCIIFFGGP---------DDRRALDLGGRMA-EN--PGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSR 677 (782)
Q Consensus 610 ~~~~Ilv~~~g~~---------~~~~al~~a~~la-~~--~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (782)
.+++|++|+||++ .++.|+++|.+++ +. .+++++++|+.++......... .........+.. .++
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~--~~~~~~~~~~~~-~~~ 80 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVD--SIYASPEDFRDM-RQS 80 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC------------CCCCSHHHHHHH-TTS
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccc--cccCCHHHHHHH-HHH
Confidence 4789999999999 9999999999986 54 6999999999864321100000 000000000000 001
Q ss_pred hhhhHHHHHHHHHHh-cCCcEEEEE-EEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhh
Q 003979 678 ERELDEAAVDDFMRK-WGGSVEYEE-KVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNIL 755 (782)
Q Consensus 678 ~~~~~~~~l~~~~~~-~~~~v~~~e-~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l 755 (782)
.++..++.++++... ....+.+.. ...+++.+.+...++..++||||||+|| ++++.+ ..+|++++.+
T Consensus 81 ~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g-----~~~~~~-----~~~Gsva~~v 150 (175)
T 2gm3_A 81 NKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRG-----LGRFQK-----VFVGTVSAFC 150 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECC-----CC-------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCC-----CChhhh-----hhcCchHHHH
Confidence 223345566665544 111232322 2334566666666665569999999999 899998 4899999999
Q ss_pred hcCCCCCcccEEEEeecc
Q 003979 756 ASSDHGIFASVLVIQQHN 773 (782)
Q Consensus 756 ~s~d~~~~~sVLvvqq~~ 773 (782)
+++ ++||||||+...
T Consensus 151 l~~---a~~pVlvv~~~~ 165 (175)
T 2gm3_A 151 VKH---AECPVMTIKRNA 165 (175)
T ss_dssp HHH---CSSCEEEEECCG
T ss_pred HhC---CCCCEEEEcCCc
Confidence 999 999999998654
No 24
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.28 E-value=4.9e-12 Score=117.75 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=90.8
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEA 512 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 512 (782)
-|||+|+|+++....+++.+..++. +.+..++++|+++... . .. ......+ .. ....++..+.+++
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~-~-~~--~~~~~~~----~~----~~~~~~~~~~l~~ 68 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAE--AHGARLIVVHAYEPVP-D-YL--GEPFFEE----AL----RRRLERAEGVLEE 68 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEEECC--------------------------CHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHh--hcCCEEEEEEEecCCC-c-cc--cccchHH----HH----HHHHHHHHHHHHH
Confidence 3799999999999999988887773 3567899999987321 1 10 0000000 00 0112344444555
Q ss_pred Hhhccce-EEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEE
Q 003979 513 YKQLRRV-TIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVL 590 (782)
Q Consensus 513 ~~~~~~v-~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~ 590 (782)
+.+..++ ++++.+.. ++..+.|++.|++.++||||||.|++++.. +..+||+.++|++++||||+++
T Consensus 69 ~~~~~g~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~--------~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 69 ARALTGVPKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGALG--------SLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHHHHCCCGGGEEEEE---SSHHHHHHHHHHHTTCSEEEEESSCTTCCS--------CSSSCHHHHHHHHHCSSCEEEE
T ss_pred HHHHcCCCccEEEEEe---cCHHHHHHHHHHHcCCCEEEECCCCCchhh--------hhhhccHHHHHHhcCCCCEEEe
Confidence 4433334 44444332 588999999999999999999999987665 4589999999999999999986
No 25
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.28 E-value=1.5e-11 Score=118.91 Aligned_cols=143 Identities=10% Similarity=0.054 Sum_probs=91.9
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchh-hHHH--hhhcCCCCccccccCCCchhHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSI-LMVQ--KTRKNGVPFINRFRQGMSHDQIVTS 509 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~ 509 (782)
-|||+|+|+++++..+++.+..++ ++.+..++++|+++........ -... ........... ....++..+.
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 79 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRN--KMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIK----EKLKEEASRK 79 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHC--CSCCSEEEEEEEEETTGGGCCC------------CCTTSH----HHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCccccccccccccccccccccHHHHH----HHHHHHHHHH
Confidence 379999999999999999988887 4467899999998743211000 0000 00000000000 0111222333
Q ss_pred HHHHhhc---cceEEEE--eEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCC
Q 003979 510 FEAYKQL---RRVTIRH--STAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAP 584 (782)
Q Consensus 510 ~~~~~~~---~~v~v~~--~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ap 584 (782)
++++.+. .++++++ .+.. ++.++.|++.|++.++||||||.|++++.. +..+||+.++|++++|
T Consensus 80 l~~~~~~~~~~g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~--------~~~~Gsv~~~vl~~~~ 148 (170)
T 2dum_A 80 LQEKAEEVKRAFRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSLS--------HEFLGSTVMRVLRKTK 148 (170)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC----------TTCCCHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCccc--------cceechHHHHHHHhCC
Confidence 3333221 3455554 4433 588999999999999999999999987655 4589999999999999
Q ss_pred CceEEEec
Q 003979 585 CSVAVLVD 592 (782)
Q Consensus 585 c~V~i~v~ 592 (782)
|||+|+.+
T Consensus 149 ~PVlvv~~ 156 (170)
T 2dum_A 149 KPVLIIKE 156 (170)
T ss_dssp SCEEEECC
T ss_pred CCEEEEcc
Confidence 99999743
No 26
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.27 E-value=8.5e-12 Score=120.12 Aligned_cols=138 Identities=9% Similarity=0.079 Sum_probs=90.9
Q ss_pred cceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEE--EEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHH
Q 003979 432 EFRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVM--RLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTS 509 (782)
Q Consensus 432 e~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~L--hliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 509 (782)
..|||+|+|+++.+..+++.+..++. .+..++++ |+++.+.......... .+ ..+.. ....++.++.
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~---~~a~l~ll~a~v~~~~~~~~~~~~~~---~~---~~~~~--~~~~~~~l~~ 85 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG---ADAKLIIASAYLPQHEDARAADILKD---ES---YKVTG--TAPIYEILHD 85 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT---TTSEEEEEEECCC----------------------------CCTHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC---CCCEEEEEEeeeccCccccccccccc---HH---HHHHH--HHHHHHHHHH
Confidence 35799999999999999999988873 56789999 8876432101100000 00 00000 1223333333
Q ss_pred HHHHhhccceE-EEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceE
Q 003979 510 FEAYKQLRRVT-IRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVA 588 (782)
Q Consensus 510 ~~~~~~~~~v~-v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~ 588 (782)
+.+..+..+++ +++.+.. ++..+.|++.|++.++||||||+|++++.. +.++||+.++|++++||||+
T Consensus 86 ~~~~~~~~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~--------~~~lGSva~~vl~~a~~PVl 154 (163)
T 1tq8_A 86 AKERAHNAGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTIA--------GRLLGSVPANVSRRAKVDVL 154 (163)
T ss_dssp HHHHHHTTTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSHH--------HHHTBBHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCccc--------ceeeccHHHHHHHhCCCCEE
Confidence 33332234565 6666543 588999999999999999999999887544 44889999999999999999
Q ss_pred EEe
Q 003979 589 VLV 591 (782)
Q Consensus 589 i~v 591 (782)
|+.
T Consensus 155 vV~ 157 (163)
T 1tq8_A 155 IVH 157 (163)
T ss_dssp EEC
T ss_pred EEe
Confidence 973
No 27
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.26 E-value=6.5e-12 Score=118.73 Aligned_cols=140 Identities=12% Similarity=0.088 Sum_probs=85.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEA 512 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 512 (782)
-|||+|+|+++++..+++.+..++. +.+..++++|+++......... ........ .... ....++..+.+++
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~-~~~~~~~~-~~~~----~~~~~~~~~~l~~ 78 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLAS--QIGARLSLIHVLDNIPMPDTPY-GTAIPLDT-ETTY----DAMLDVEKQKLSQ 78 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHH--HHTCEEEEEEEEC--------C-TTCCCSSS-CCCH----HHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHh--hcCCEEEEEEEEcCcccccccc-ccccCcCH-HHHH----HHHHHHHHHHHHH
Confidence 4799999999999999999988874 3567899999987532210000 00000000 0000 0122344445555
Q ss_pred HhhccceE-EEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEe
Q 003979 513 YKQLRRVT-IRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLV 591 (782)
Q Consensus 513 ~~~~~~v~-v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v 591 (782)
+.+..++. ++..+.. ++..+.|++.|++.++||||||.|++++.. . .+||+.++|++++||||+++.
T Consensus 79 ~~~~~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~--------~~Gs~~~~vl~~~~~pVlvv~ 146 (150)
T 3tnj_A 79 IGNTLGIDPAHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRHGLA-L--------LLGSTANSVLHYAKCDVLAVR 146 (150)
T ss_dssp HHHHHTCCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC-----------------CCCHHHHHHHHCSSEEEEEE
T ss_pred HHHHcCCCcceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCCCcC-e--------EecchHHHHHHhCCCCEEEEe
Confidence 44432233 2233322 588999999999999999999999886544 3 788999999999999999974
Q ss_pred c
Q 003979 592 D 592 (782)
Q Consensus 592 ~ 592 (782)
+
T Consensus 147 ~ 147 (150)
T 3tnj_A 147 L 147 (150)
T ss_dssp C
T ss_pred C
Confidence 3
No 28
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.25 E-value=5.5e-12 Score=120.24 Aligned_cols=134 Identities=12% Similarity=0.106 Sum_probs=92.2
Q ss_pred cceEEEEec--CCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHH
Q 003979 432 EFRIQACVH--GPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTS 509 (782)
Q Consensus 432 e~rILvpv~--~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 509 (782)
--|||+|+| +++++..+++.+..++. +.+.+++++|+++.+..........+.. + ...++..+.
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~ 80 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAH--DYDVPLGICSVLESEDINIFDSLTPSKI-------Q-----AKRKHVEDV 80 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHH--HHTCCEEEEEEECCCCTTCCCSSHHHHH-------H-----HHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHH--hcCCEEEEEEEEeCCCccccccCCHHHH-------H-----HHHHHHHHH
Confidence 347999999 99999999999888774 3567899999998653211100000000 0 111222233
Q ss_pred HHHHh---hccce-EEEEeEEecCCCchHHHHHHH-HHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCC
Q 003979 510 FEAYK---QLRRV-TIRHSTAISALSTMHEDIFHV-AEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAP 584 (782)
Q Consensus 510 ~~~~~---~~~~v-~v~~~~~v~~~~~~~~~I~~~-a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ap 584 (782)
++++. +..++ .+++.+..+ ++..++|++. |++.++||||||.|++++.+ . .+||+.++|++++|
T Consensus 81 l~~~~~~~~~~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~--------~-~~Gs~~~~vl~~a~ 149 (156)
T 3fg9_A 81 VAEYVQLAEQRGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS--------K-IAGAIGPRLARKAP 149 (156)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS--------S-SCSCHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc--------e-eecchHHHHHHhCC
Confidence 33332 22445 366666552 5899999999 99999999999999987654 3 78999999999999
Q ss_pred CceEEE
Q 003979 585 CSVAVL 590 (782)
Q Consensus 585 c~V~i~ 590 (782)
|||+++
T Consensus 150 ~PVlvV 155 (156)
T 3fg9_A 150 ISVIVV 155 (156)
T ss_dssp SEEEEE
T ss_pred CCEEEe
Confidence 999986
No 29
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.25 E-value=1.7e-11 Score=114.49 Aligned_cols=137 Identities=10% Similarity=0.018 Sum_probs=91.8
Q ss_pred cceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec-CcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQ-ASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
+++|++|+||+++++.|+++|.++|+..+++++++|+.++ ...... . .....+.. .+..++..++.++++
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~-~-------~~~~~~~~-~~~~~~~~~~~l~~~ 72 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTG-L-------IDVNMSSM-QDRISTETQKALLDL 72 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCC-C-------EEHHHHHH-TTCCCCHHHHHHHHH
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhcc-c-------cccchHHH-HHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999853 211000 0 00000000 001223455667766
Q ss_pred HHhcCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEE
Q 003979 690 MRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVI 769 (782)
Q Consensus 690 ~~~~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLvv 769 (782)
..+.+-.+.......+++.+.+...++..++||||||+|+ +++.+ +|++++.++++ ++||||||
T Consensus 73 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~------~~~~~-------lgs~~~~vl~~---~~~pVlvv 136 (141)
T 1jmv_A 73 AESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQ------DFWSK-------LMSSTRQVMNT---IKIDMLVV 136 (141)
T ss_dssp HHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEECC------CCHHH-------HHHHHHHHHTT---CCSEEEEE
T ss_pred HHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCCC------chhhh-------hcchHHHHHhc---CCCCEEEe
Confidence 6542222211223345677777766666669999999984 34444 49999999999 99999999
Q ss_pred eec
Q 003979 770 QQH 772 (782)
Q Consensus 770 qq~ 772 (782)
+..
T Consensus 137 ~~~ 139 (141)
T 1jmv_A 137 PLR 139 (141)
T ss_dssp ECC
T ss_pred eCC
Confidence 864
No 30
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.24 E-value=2.9e-11 Score=112.91 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=88.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeec-CCCCchh--hHHHhhhcCCCCccccccCCCchhHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVEL-TDRSSSI--LMVQKTRKNGVPFINRFRQGMSHDQIVTS 509 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel-~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 509 (782)
-|||+|+|+++....+++.+..++. +.+..++++|+.+- +...... ....+. .+ ...++..+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~ 68 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAK--RHDAKLSIIHVDVNFSDLYTGLIDVNMSSM-QD-----------RISTETQKA 68 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHH--HHTCEEEEEEEEECCGGGCCCCEEHHHHHH-TT-----------CCCCHHHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHHH--hcCCEEEEEEEecCchhhhccccccchHHH-HH-----------HHHHHHHHH
Confidence 3799999999999999998887773 35678999999842 2111100 000000 00 112344445
Q ss_pred HHHHhhccceEE-EEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceE
Q 003979 510 FEAYKQLRRVTI-RHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVA 588 (782)
Q Consensus 510 ~~~~~~~~~v~v-~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~ 588 (782)
++++.+..++.+ +..+.. ++..+.|++.|++.++||||||.| +++.. + +||+.++|++++||||+
T Consensus 69 l~~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~-~~~~~--------~--lgs~~~~vl~~~~~pVl 134 (141)
T 1jmv_A 69 LLDLAESVDYPISEKLSGS---GDLGQVLSDAIEQYDVDLLVTGHH-QDFWS--------K--LMSSTRQVMNTIKIDML 134 (141)
T ss_dssp HHHHHHHSSSCCCCEEEEE---ECHHHHHHHHHHHTTCCEEEEEEC-CCCHH--------H--HHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCceEEEEec---CCHHHHHHHHHHhcCCCEEEEeCC-Cchhh--------h--hcchHHHHHhcCCCCEE
Confidence 555544333433 233322 578999999999999999999998 65422 2 58999999999999999
Q ss_pred EEec
Q 003979 589 VLVD 592 (782)
Q Consensus 589 i~v~ 592 (782)
++.+
T Consensus 135 vv~~ 138 (141)
T 1jmv_A 135 VVPL 138 (141)
T ss_dssp EEEC
T ss_pred EeeC
Confidence 9743
No 31
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.23 E-value=2.1e-11 Score=113.50 Aligned_cols=130 Identities=8% Similarity=0.035 Sum_probs=90.6
Q ss_pred eEEEEecCCCChhHHHHHHHHhc-cCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCch-hHHHHHHH
Q 003979 434 RIQACVHGPENVPSLIKLTELIR-TTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSH-DQIVTSFE 511 (782)
Q Consensus 434 rILvpv~~~~~~~~~i~l~~~~~-~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 511 (782)
|||+|+|+++++..+++.+..++ .. .+..++++|+++.+............. .+ ... ++..+.++
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~l~ 69 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEAVLAAYDE------IE-----MKEEEKAKLLTQ 69 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHHHHHHHHH------HH-----HHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccC--CCCEEEEEEEecCCCcccccccCcHHH------HH-----HHHHHHHHHHHH
Confidence 79999999999999999988887 43 578999999998654332110000000 00 111 22223333
Q ss_pred HHh---hccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceE
Q 003979 512 AYK---QLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVA 588 (782)
Q Consensus 512 ~~~---~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~ 588 (782)
++. +..++++++.+.. ++..+.|++.|+ ++||||||.|++++.. +.. ||+.++|++++||||+
T Consensus 70 ~~~~~~~~~g~~~~~~v~~---g~~~~~I~~~a~--~~dliV~G~~~~~~~~--------~~~-Gs~~~~vl~~~~~pVl 135 (138)
T 3idf_A 70 KFSTFFTEKGINPFVVIKE---GEPVEMVLEEAK--DYNLLIIGSSENSFLN--------KIF-ASHQDDFIQKAPIPVL 135 (138)
T ss_dssp HHHHHHHTTTCCCEEEEEE---SCHHHHHHHHHT--TCSEEEEECCTTSTTS--------SCC-CCTTCHHHHHCSSCEE
T ss_pred HHHHHHHHCCCCeEEEEec---CChHHHHHHHHh--cCCEEEEeCCCcchHH--------HHh-CcHHHHHHhcCCCCEE
Confidence 332 2256676666554 478999999999 9999999999987766 335 8888999999999999
Q ss_pred EE
Q 003979 589 VL 590 (782)
Q Consensus 589 i~ 590 (782)
++
T Consensus 136 vv 137 (138)
T 3idf_A 136 IV 137 (138)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 32
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.22 E-value=4.9e-11 Score=115.97 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=87.1
Q ss_pred cceEEEEecCCC---------ChhHHHHHHHHhccCC-CCCceEEEEEEeecCCCCchh-----hHHHhhhcCCCCcccc
Q 003979 432 EFRIQACVHGPE---------NVPSLIKLTELIRTTE-KSTLKLYVMRLVELTDRSSSI-----LMVQKTRKNGVPFINR 496 (782)
Q Consensus 432 e~rILvpv~~~~---------~~~~~i~l~~~~~~~~-~~~~~v~~Lhliel~~r~~~~-----~~~~~~~~~~~~~~~~ 496 (782)
-.|||+|+|+++ .+..+++.+..+.... ..+.+++++|+++........ ........ ..
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~-----~~- 78 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRD-----MR- 78 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHH-----HT-
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHH-----HH-
Confidence 357999999999 8888998887754221 257899999998643211000 00000000 00
Q ss_pred ccCCCchhHHHHHHHHHhh---ccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchH
Q 003979 497 FRQGMSHDQIVTSFEAYKQ---LRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWR 573 (782)
Q Consensus 497 ~~~~~~~~~i~~~~~~~~~---~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~ 573 (782)
....++..+.++++.+ ..++++++.+.. ++..+.|++.|++.++||||||.|++++.. +.++|
T Consensus 79 ---~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~--------~~~~G 144 (175)
T 2gm3_A 79 ---QSNKAKGLHLLEFFVNKCHEIGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQ--------KVFVG 144 (175)
T ss_dssp ---TSHHHHHHHHHHHHHHHHHHHTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC----------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHCCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChhh--------hhhcC
Confidence 0111222333333322 245677665543 588999999999999999999999987665 44899
Q ss_pred HHHHHHhhcCCCceEEEecC
Q 003979 574 EVNRTVLQNAPCSVAVLVDR 593 (782)
Q Consensus 574 ~v~~~Vl~~apc~V~i~v~r 593 (782)
|+.++|++++||||+|+..+
T Consensus 145 sva~~vl~~a~~pVlvv~~~ 164 (175)
T 2gm3_A 145 TVSAFCVKHAECPVMTIKRN 164 (175)
T ss_dssp CHHHHHHHHCSSCEEEEECC
T ss_pred chHHHHHhCCCCCEEEEcCC
Confidence 99999999999999997543
No 33
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.13 E-value=8.8e-11 Score=122.39 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=93.6
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCC---cchhhhhHHHHHHH
Q 003979 612 KRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNS---FSRERELDEAAVDD 688 (782)
Q Consensus 612 ~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 688 (782)
++|++|+||++.++.|+++|.++|+..+++++++|+.++......... ..+.... +..++. .+..++..++.+++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 78 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELL-DFGALTV-PVPVLRTELERALALRGEAVLER 78 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC---------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCccccccc-CchHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999875321100000 0000000 000000 00122334456666
Q ss_pred HHHh---cCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccc-cccccCCCCcccccchhhhhcCCCCCcc
Q 003979 689 FMRK---WGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEA-ELADHQPENVGLGLIGNILASSDHGIFA 764 (782)
Q Consensus 689 ~~~~---~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~-GL~~~w~e~~~LG~vgd~l~s~d~~~~~ 764 (782)
+... .+-.+.+. ...+++.+.+... ..++||||||+|| ++ ++.+ ..+|++++.++++ ++|
T Consensus 79 ~~~~~~~~g~~~~~~-~~~g~~~~~I~~~--~~~~dliV~G~~g-----~~~~~~~-----~~~Gs~~~~v~~~---a~~ 142 (268)
T 3ab8_A 79 VRQSALAAGVAVEAV-LEEGVPHEAILRR--ARAADLLVLGRSG-----EAHGDGF-----GGLGSTADRVLRA---SPV 142 (268)
T ss_dssp HHHHHHHTTCCEEEE-EEEECHHHHHHHH--HTTCSEEEEESSC-----TTSCTTC-----CSCCHHHHHHHHH---CSS
T ss_pred HHHHHHhCCCCeEEE-EecCCHHHHHHhh--ccCCCEEEEeccC-----CCccccc-----cccchhHHHHHHh---CCC
Confidence 5544 12223222 2344566665555 3349999999999 88 8888 5899999999999 999
Q ss_pred cEEEEeecc
Q 003979 765 SVLVIQQHN 773 (782)
Q Consensus 765 sVLvvqq~~ 773 (782)
|||||+...
T Consensus 143 PVlvv~~~~ 151 (268)
T 3ab8_A 143 PVLLAPGEP 151 (268)
T ss_dssp CEEEECSSC
T ss_pred CEEEECCCC
Confidence 999998653
No 34
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.11 E-value=1.1e-10 Score=124.97 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=96.4
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
.+++||||+||++.++.|+++|.++|+..+++++++|++++....... .......+. ..+...+..++.++++
T Consensus 6 ~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~l~~~ 78 (319)
T 3olq_A 6 KYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTT------LLSPDERNA-MRKGVINQKTAWIKQQ 78 (319)
T ss_dssp CSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTT------TSCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhcc------ccChhhHHH-HHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999998643221100 000000000 0001122334555555
Q ss_pred HHh-cCCcEEEEEEE--ecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccE
Q 003979 690 MRK-WGGSVEYEEKV--MANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASV 766 (782)
Q Consensus 690 ~~~-~~~~v~~~e~~--v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sV 766 (782)
..+ ....+.+.... .+++.+.+...++..++||||||+|| ++++.+ ..+|++.+.++++ ++|||
T Consensus 79 ~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g-----~~~~~~-----~~~Gs~~~~vl~~---~~~PV 145 (319)
T 3olq_A 79 ARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQ-----HDKLGS-----LIFTPLDWQLLRK---CPAPV 145 (319)
T ss_dssp HHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBC-----C--CCS-----CBCCHHHHHHHHH---CSSCE
T ss_pred HHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCc-----Cchhhc-----ccccccHHHHHhc---CCCCE
Confidence 544 22233333333 35566666666555559999999999 888888 5899999999999 99999
Q ss_pred EEEeecc
Q 003979 767 LVIQQHN 773 (782)
Q Consensus 767 Lvvqq~~ 773 (782)
|||+++.
T Consensus 146 lvv~~~~ 152 (319)
T 3olq_A 146 WMVKDKE 152 (319)
T ss_dssp EEEESSC
T ss_pred EEecCcc
Confidence 9999765
No 35
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.10 E-value=3.8e-11 Score=127.09 Aligned_cols=140 Identities=11% Similarity=0.130 Sum_probs=99.6
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
.+++|++|+||++.++.|+++|.++|+..+++++++|+.++........ ........+..++..++.++++
T Consensus 21 m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~ 91 (294)
T 3loq_A 21 QSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSG---------GIDIDHYIDEMSEKAEEVLPEV 91 (294)
T ss_dssp TTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC--------------CCCTTHHHHHHHHHHHHHHHHH
T ss_pred hhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccc---------cccHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999997643211000 0000000012344555667776
Q ss_pred HHh-cCCcEEEEE--EE-ecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCccc
Q 003979 690 MRK-WGGSVEYEE--KV-MANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFAS 765 (782)
Q Consensus 690 ~~~-~~~~v~~~e--~~-v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~s 765 (782)
... ....+.+.. .. .+++.+.+ .++..++||||||++| ++++.+ ..+|++++.++++ ++||
T Consensus 92 ~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g-----~~~~~~-----~~~Gs~~~~vl~~---~~~P 156 (294)
T 3loq_A 92 AQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRG-----ASKFKK-----ILLGSVSEGVLHD---SKVP 156 (294)
T ss_dssp HHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCC-----CCHHHH-----HHHCCHHHHHHHH---CSSC
T ss_pred HHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCC-----Cccccc-----eeeccHHHHHHhc---CCCC
Confidence 655 223344443 22 34566766 4444459999999999 888988 5899999999999 9999
Q ss_pred EEEEeecc
Q 003979 766 VLVIQQHN 773 (782)
Q Consensus 766 VLvvqq~~ 773 (782)
||||+...
T Consensus 157 Vlvv~~~~ 164 (294)
T 3loq_A 157 VYIFKHDM 164 (294)
T ss_dssp EEEECCCT
T ss_pred EEEecCcc
Confidence 99999875
No 36
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.08 E-value=3.2e-10 Score=105.39 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=85.5
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEee-ec-Ccccc-cccccCCCCCCCcccCCCCcchhhhhHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFI-GQ-ASRAA-TSSIAERPTSDISTENGNSFSRERELDEAAV 686 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 686 (782)
.+++|++|+||+++++.|+++|.++|+..+++++++|+. +. ..... .... .+ .+....+..++..++.+
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~l 74 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFG--LP------FPPEIKEESKKRIERRL 74 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHC--CC------CCTHHHHHHHHHHHHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccC--CC------CChHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998 63 10000 0000 00 00000011233444555
Q ss_pred HHHHHh---cC-CcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCC
Q 003979 687 DDFMRK---WG-GSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGI 762 (782)
Q Consensus 687 ~~~~~~---~~-~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~ 762 (782)
+++ .+ .. +.+.+. ...+++.+.+...++..++||||||+|| + ++++.++++ +
T Consensus 75 ~~~-~~~~~~~~~~~~~~-~~~g~~~~~I~~~a~~~~~dliV~G~~g-----~--------------sv~~~vl~~---a 130 (138)
T 1q77_A 75 REV-WEKLTGSTEIPGVE-YRIGPLSEEVKKFVEGKGYELVVWACYP-----S--------------AYLCKVIDG---L 130 (138)
T ss_dssp HHH-HHHHHSCCCCCCEE-EECSCHHHHHHHHHTTSCCSEEEECSCC-----G--------------GGTHHHHHH---S
T ss_pred HHH-HHHhhccCCcceEE-EEcCCHHHHHHHHHHhcCCCEEEEeCCC-----C--------------chHHHHHHh---C
Confidence 555 32 11 133332 3345566666666665569999999998 3 789999999 9
Q ss_pred cccEEEEe
Q 003979 763 FASVLVIQ 770 (782)
Q Consensus 763 ~~sVLvvq 770 (782)
+||||||+
T Consensus 131 ~~PVlvv~ 138 (138)
T 1q77_A 131 NLASLIVK 138 (138)
T ss_dssp SSEEEECC
T ss_pred CCceEeeC
Confidence 99999984
No 37
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.06 E-value=1.3e-10 Score=124.00 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=96.2
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
.+++|+||+||++.++.|+++|.++|+..+++++++|++++....... . .......+..++..++.+++.
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~l~~~ 87 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLE-------V---PLPPGVLRWQQDHGRHLIDDA 87 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTC-------C---CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCccccccc-------C---CCCchhhHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998743211000 0 000000011233444555555
Q ss_pred HHh---c---CCcEEEEEE-EecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCC
Q 003979 690 MRK---W---GGSVEYEEK-VMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGI 762 (782)
Q Consensus 690 ~~~---~---~~~v~~~e~-~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~ 762 (782)
... . ...+.+... ..+++.+.+...++ ++||||||+|| ++++.+ ..+|++++.++++ +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g-----~~~~~~-----~~~Gs~~~~vl~~---~ 152 (309)
T 3cis_A 88 LKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLG-----SGRWPG-----RLLGSVSSGLLRH---A 152 (309)
T ss_dssp HHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSC-----TTCCTT-----CCSCHHHHHHHHH---C
T ss_pred HHHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCC-----Cccccc-----cccCcHHHHHHHh---C
Confidence 443 1 112333332 23446666665554 49999999999 888888 5899999999999 9
Q ss_pred cccEEEEeecc
Q 003979 763 FASVLVIQQHN 773 (782)
Q Consensus 763 ~~sVLvvqq~~ 773 (782)
+||||||+...
T Consensus 153 ~~PVlvv~~~~ 163 (309)
T 3cis_A 153 HCPVVIIHDED 163 (309)
T ss_dssp SSCEEEECTTC
T ss_pred CCCEEEEcCCc
Confidence 99999998764
No 38
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.06 E-value=3.7e-10 Score=119.20 Aligned_cols=122 Identities=9% Similarity=0.027 Sum_probs=93.3
Q ss_pred ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhHHHHHHHH
Q 003979 610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDF 689 (782)
Q Consensus 610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 689 (782)
.+++|++|+||++.++.|+++|.++|+..+++++++|+.++.. .++..+++.+++
T Consensus 6 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~-------------------------~~~~l~~~~~~~ 60 (290)
T 3mt0_A 6 AIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRD-------------------------HSAALNDLAQEL 60 (290)
T ss_dssp TCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSSC-------------------------CHHHHHHHHHHH
T ss_pred hhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCcHH-------------------------HHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999987411 222233444444
Q ss_pred HHhcCCcEEEEEEEe--cChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEE
Q 003979 690 MRKWGGSVEYEEKVM--ANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVL 767 (782)
Q Consensus 690 ~~~~~~~v~~~e~~v--~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVL 767 (782)
.. . .+.+..... +++.+.+...++..++||||||++| ++++.+ ..+|++.+.++++ ++||||
T Consensus 61 ~~-~--~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~-----~~~~~~-----~~~gs~~~~vl~~---~~~PVl 124 (290)
T 3mt0_A 61 RE-E--GYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFP-----DNPLKK-----AILTPDDWKLLRF---APCPVL 124 (290)
T ss_dssp HH-T--TCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCC-----SCTTST-----TSCCHHHHHHHHH---CSSCEE
T ss_pred hh-C--CCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEeccc-----CCchhh-----cccCHHHHHHHhc---CCCCEE
Confidence 42 2 233333333 3466666666555569999999999 888888 5899999999999 999999
Q ss_pred EEeec
Q 003979 768 VIQQH 772 (782)
Q Consensus 768 vvqq~ 772 (782)
+|+.+
T Consensus 125 vv~~~ 129 (290)
T 3mt0_A 125 MTKTA 129 (290)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 99943
No 39
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.92 E-value=4.2e-09 Score=97.72 Aligned_cols=127 Identities=11% Similarity=0.061 Sum_probs=80.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEe-ec-CCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHH
Q 003979 433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLV-EL-TDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSF 510 (782)
Q Consensus 433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhli-el-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 510 (782)
.|||+|+|+++....+++.+..++ ++.+..++++|++ +. +.. +.. .. .......... ....++..+.+
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~--~~~-~~-~~~~~~~~~~----~~~~~~~~~~l 74 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFS--EKLGAELDILAVLEDVYNLE--RAN-VT-FGLPFPPEIK----EESKKRIERRL 74 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHH--TTTCCEEEEEEECHHHHHHH--HHH-HH-HCCCCCTHHH----HHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHH--HHcCCeEEEEEEeccccccc--ccc-cc-cCCCCChHHH----HHHHHHHHHHH
Confidence 479999999999999999988887 3467899999998 53 110 000 00 0000000000 00111222223
Q ss_pred HHH----hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCc
Q 003979 511 EAY----KQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCS 586 (782)
Q Consensus 511 ~~~----~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~ 586 (782)
+++ ....+ ++++.+. .++..+.|++.|++.++||||||.|++ |+.++|++++|||
T Consensus 75 ~~~~~~~~~~~~-~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~g~-----------------sv~~~vl~~a~~P 133 (138)
T 1q77_A 75 REVWEKLTGSTE-IPGVEYR---IGPLSEEVKKFVEGKGYELVVWACYPS-----------------AYLCKVIDGLNLA 133 (138)
T ss_dssp HHHHHHHHSCCC-CCCEEEE---CSCHHHHHHHHHTTSCCSEEEECSCCG-----------------GGTHHHHHHSSSE
T ss_pred HHHHHHhhccCC-cceEEEE---cCCHHHHHHHHHHhcCCCEEEEeCCCC-----------------chHHHHHHhCCCc
Confidence 332 12233 4544443 368999999999999999999999865 2348999999999
Q ss_pred eEEE
Q 003979 587 VAVL 590 (782)
Q Consensus 587 V~i~ 590 (782)
|+++
T Consensus 134 Vlvv 137 (138)
T 1q77_A 134 SLIV 137 (138)
T ss_dssp EEEC
T ss_pred eEee
Confidence 9985
No 40
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.22 E-value=0.076 Score=56.33 Aligned_cols=109 Identities=15% Similarity=0.076 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhccCchhHHhcc---chhHHHHHHHHHH-HHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhh
Q 003979 93 LASVGLLFFLFLVGLELDLSSIRQNG---KSAFKIALAGITL-PFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSI 168 (782)
Q Consensus 93 l~~lgl~~llF~~Gle~d~~~l~~~~---~~~~~i~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~ 168 (782)
....++.+.||..|++++++++++.. |.........+++ |+ +++.++..++.+. . ....++-...++
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pl-l~~~l~~~~~l~~------~--~~~Glil~~~~P 114 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPA-TAWCLSKLLNLPA------E--IAVGVILVGCCP 114 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHH-HHHHHHHHTTCCH------H--HHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHH-HHHHHHHHhCCCh------H--HHHHHHHHhcCC
Confidence 44568889999999999999999544 3333333344443 43 3444444442211 1 111111122222
Q ss_pred ccHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 003979 169 TAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAG 215 (782)
Q Consensus 169 Ts~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~ 215 (782)
+.. .+.++..+ .+.+. .++.+...++.+++.+.+-+...+..
T Consensus 115 ~~~--~s~v~t~~--a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 115 GGT--ASNVMTYL--ARGNV-ALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp CCT--HHHHHHHH--TTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chh--HHHHHHHH--hCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 221 12233333 23333 56777788888888887766555543
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=95.74 E-value=0.24 Score=50.48 Aligned_cols=217 Identities=12% Similarity=0.061 Sum_probs=132.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCc-hhHHHHHHHH
Q 003979 434 RIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMS-HDQIVTSFEA 512 (782)
Q Consensus 434 rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 512 (782)
.||||...|..-.+++.++..+... ...+.+.++. +.... .. .++. +.+++
T Consensus 22 ~iLV~sg~p~~~~~li~la~~lt~~---~G~ltv~~i~--p~~~~----------------------~~l~~ql-~~l~~ 73 (294)
T 3g40_A 22 NLLVPVEDPRELMGTFDFLRDITYP---KGSVKLLGLA--GNTDK----------------------ENLLSQL-PSISE 73 (294)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHTT---TCEEEEEECC-----CT----------------------TCHHHHH-HHHHH
T ss_pred cEEEecCCchhhhhHHHHHHHhccC---ceeEEEEEEc--cCCCc----------------------cHHHHHH-HHHHH
Confidence 5999999999999999999999743 3456665663 21110 11 2332 55666
Q ss_pred HhhccceEEEEeEEecCCCchHHHHHHHHHh-----cCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCce
Q 003979 513 YKQLRRVTIRHSTAISALSTMHEDIFHVAEA-----KRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSV 587 (782)
Q Consensus 513 ~~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~-----~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V 587 (782)
|-+..++..-..+..+ .+..+++....+. -+++-|++|+..+... +..+..+.++. +++.-.|
T Consensus 74 ~l~~r~v~a~~~vi~a--~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~---------~~~y~~~i~~~-~~~~~nV 141 (294)
T 3g40_A 74 GFQEEGVFSSWTIIDT--AEFEENLVVGMEALTGSFFRPSILFLRLPENRDR---------DEEIREIIRKA-SMYRMGV 141 (294)
T ss_dssp HHHHTTCEEEEEEC-------CHHHHHHHHHHTTCSSCSCEEEEECCSSGGG---------HHHHHHHHHHH-HHTTCEE
T ss_pred HHHhCCceeEEEEEec--CChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhh---------hHHHHHHHHHH-HHhCceE
Confidence 7666666654444334 4778888888777 4678999998654311 22566666554 5668899
Q ss_pred EEEecCCCCCCCCCcccCccccccceEEEeccC----------CcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccc
Q 003979 588 AVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFG----------GPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATS 657 (782)
Q Consensus 588 ~i~v~r~~~~~~~~~~~~~~~~~~~~Ilv~~~g----------~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~ 657 (782)
.++.+.... ..+ ..++|=+=..+ ..+-.-++-+|-.+.++.+++++++.+++.+.
T Consensus 142 lil~~~~~~-------~fg---~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~de~----- 206 (294)
T 3g40_A 142 LLFSKHPQA-------GLG---RQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPTAI----- 206 (294)
T ss_dssp EEEECCTTT-------TTT---TSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSSHH-----
T ss_pred EEEecCCcc-------CCC---CCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCCHH-----
Confidence 998643221 111 23455443222 23445677888888888899999999987322
Q ss_pred cccCCCCCCCcccCCCCcchhhhhHHHHHHHHHHhcCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCC
Q 003979 658 SIAERPTSDISTENGNSFSRERELDEAAVDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGR 729 (782)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g 729 (782)
.++.++++++++.+..+-...+. ++...=. +.+++..++||+++|-..
T Consensus 207 --------------------a~~~a~~~l~~Lv~~~Ri~a~~~-vv~~~F~---~il~~s~~ADL~flGl~~ 254 (294)
T 3g40_A 207 --------------------QAQAAENFLQSLAELARIPNVKM-QVLRENP---IKSSKLPFASLHIFSLDP 254 (294)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTCCSCEE-EEESSCT---TTSSSCCCCSEEEEECCS
T ss_pred --------------------HHHHHHHHHHHHHHHhcCCceEE-EecCchH---HHHhhCcCCCEEEEcCCC
Confidence 56677888888887622122222 2222223 345555459999999876
No 42
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=67.28 E-value=17 Score=39.97 Aligned_cols=40 Identities=18% Similarity=0.031 Sum_probs=35.5
Q ss_pred cceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQ 650 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~ 650 (782)
.++++|++.||.|+--.+..+.++.+..+.+++++|+...
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhg 57 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHM 57 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECT
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECC
Confidence 4689999999999999999999998888899999999753
No 43
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=54.43 E-value=83 Score=32.68 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=54.9
Q ss_pred hhhHHHHHHHhhcccccccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH---hhcccceeec-
Q 003979 323 GLLLPLYFASSGLKTDVAKIRGI-EAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLM---NTKGLVELIV- 397 (782)
Q Consensus 323 ~~f~plfF~~~G~~id~~~l~~~-~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m---~~kG~~~lvl- 397 (782)
...+.+.+...|++++..++... ..+.......+.-++...+.++..++.++.+.. ...|+.+ .|-|..+.++
T Consensus 46 ~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~--~~~Glil~~~~P~~~~s~v~t 123 (332)
T 3zux_A 46 PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAE--IAVGVILVGCCPGGTASNVMT 123 (332)
T ss_dssp HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHSCCCTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChH--HHHHHHHHhcCCchhHHHHHH
Confidence 34566778889999999888642 134444444555667777788888888876643 3444332 3344433333
Q ss_pred ----cChhhHHHHHHHHHHHHHhhhhhhcc
Q 003979 398 ----LNDEMFAILVLMALFTTFMTTPMRQL 423 (782)
Q Consensus 398 ----i~~~~~~~lv~~~~v~t~i~~pl~~~ 423 (782)
=|.+.-..++....+.+.++.|++.+
T Consensus 124 ~~a~Gd~~la~~~~~~stll~~~~~Pl~~~ 153 (332)
T 3zux_A 124 YLARGNVALSVAVTSVSTLTSPLLTPAIFL 153 (332)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333333344455566555
No 44
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=52.26 E-value=21 Score=37.21 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=32.3
Q ss_pred cceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQ 650 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~ 650 (782)
+.++++.+.||.|+--.+.++.+.....+.++.++++...
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg 85 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTR 85 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCS
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECC
Confidence 4579999999999999999998887655566778888543
No 45
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=51.09 E-value=52 Score=31.61 Aligned_cols=34 Identities=9% Similarity=0.001 Sum_probs=27.1
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 003979 612 KRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIG 649 (782)
Q Consensus 612 ~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~ 649 (782)
++|+|.+.||.|+--.+.++.+.. -++.++++..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~ 78 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDT 78 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEEC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeC
Confidence 379999999999999888888874 2467777765
No 46
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=49.32 E-value=24 Score=35.24 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=26.5
Q ss_pred EeccCCcchHHHHHHHHHHhcCCCe--EEEEEEeee
Q 003979 616 IIFFGGPDDRRALDLGGRMAENPGG--NVTLVRFIG 649 (782)
Q Consensus 616 v~~~g~~~~~~al~~a~~la~~~~~--~l~vl~v~~ 649 (782)
++..-.|.|.+|++.|.++.+. |. +++++.+-+
T Consensus 31 ~~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~ 65 (252)
T 1efp_B 31 VKMSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGV 65 (252)
T ss_dssp CCEEECHHHHHHHHHHHHHHTT-TSCSEEEEEEEES
T ss_pred CCccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC
Confidence 3445568899999999999987 66 899887764
No 47
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=48.45 E-value=30 Score=37.66 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=34.7
Q ss_pred cceEEEeccCCcchHHHHHHHHHHhcC-CCeEEEEEEeee
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMAEN-PGGNVTLVRFIG 649 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la~~-~~~~l~vl~v~~ 649 (782)
.++|+|++.||.|+--.+..+.++.+. .+.+++++|+..
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdh 52 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHH 52 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEEC
Confidence 458999999999999999999998876 789999999964
No 48
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=47.80 E-value=33 Score=34.37 Aligned_cols=33 Identities=18% Similarity=-0.008 Sum_probs=26.7
Q ss_pred EeccCCcchHHHHHHHHHHhcCCCe--EEEEEEeee
Q 003979 616 IIFFGGPDDRRALDLGGRMAENPGG--NVTLVRFIG 649 (782)
Q Consensus 616 v~~~g~~~~~~al~~a~~la~~~~~--~l~vl~v~~ 649 (782)
++..-.|.|.+|++.|.++.+. |. +++++.+-+
T Consensus 34 ~~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~ 68 (255)
T 1efv_B 34 VKHSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGP 68 (255)
T ss_dssp CCEEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEES
T ss_pred CCccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC
Confidence 3455568899999999999987 66 899887764
No 49
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=46.73 E-value=30 Score=35.83 Aligned_cols=40 Identities=28% Similarity=0.250 Sum_probs=34.4
Q ss_pred cceEEEeccCCcchHHHHHHHHHHhcCCCeE-EEEEEeeec
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMAENPGGN-VTLVRFIGQ 650 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~-l~vl~v~~~ 650 (782)
.++++|++.||.|+--.+..+.+..+..+.+ ++++++...
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g 64 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHM 64 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECC
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECC
Confidence 4689999999999999999999887777878 999999643
No 50
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=45.19 E-value=27 Score=35.17 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=27.2
Q ss_pred EeccCCcchHHHHHHHHHHhcCCCe--EEEEEEeee
Q 003979 616 IIFFGGPDDRRALDLGGRMAENPGG--NVTLVRFIG 649 (782)
Q Consensus 616 v~~~g~~~~~~al~~a~~la~~~~~--~l~vl~v~~ 649 (782)
++..-.|.|.+|++.|.++++..+. +++++.+-+
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~ 66 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGP 66 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESC
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCc
Confidence 4555568899999999999977676 898887754
No 51
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=45.05 E-value=50 Score=27.68 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCC
Q 003979 531 STMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGF 595 (782)
Q Consensus 531 ~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~ 595 (782)
....+.|.+++++.+++.||+|...+. +|..... ....+.+.+++-++ +.||-. +|..+
T Consensus 37 ~~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~--~~~~~~f~~~L~~~-~lpV~~-~DERl 95 (98)
T 1iv0_A 37 EEDVEALLDFVRREGLGKLVVGLPLRT--DLKESAQ--AGKVLPLVEALRAR-GVEVEL-WDERF 95 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCC--CSSSCCC--SSTTHHHHHHHHHT-TCEEEE-ECCSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccCC--CCCcCHH--HHHHHHHHHHHhcC-CCCEEE-ECCCC
Confidence 345678999999999999999976542 3332222 33567777888777 899866 66643
No 52
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=43.40 E-value=36 Score=34.14 Aligned_cols=39 Identities=10% Similarity=-0.049 Sum_probs=31.1
Q ss_pred cceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 003979 611 LKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQ 650 (782)
Q Consensus 611 ~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~ 650 (782)
+.++++.+.||.|+--.+.++.++... +.++.++++.+.
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg 79 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTL 79 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCS
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCC
Confidence 447899999999999999998888765 566778887543
No 53
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=41.40 E-value=7.4 Score=25.75 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=22.3
Q ss_pred HHHHHHHHhhccHHHHHHHHHHccc
Q 003979 159 IIFMGVSLSITAFPVLARILADLKL 183 (782)
Q Consensus 159 ~l~l~~~~s~Ts~~vv~~il~el~l 183 (782)
++++|++.|.|++..+..++++++.
T Consensus 6 ~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 6 NLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHccCCChHHHHHHHHHcCC
Confidence 5778999999999999999999883
No 54
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=37.81 E-value=0.65 Score=30.88 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=23.4
Q ss_pred HHHHHHHHhcchhhHHHHHHHHhcCCC
Q 003979 280 VSGFLTDLIGIHAIFGAFVFGLTIPKG 306 (782)
Q Consensus 280 ~~~~i~~~~g~~~~lgaf~aGl~~~~~ 306 (782)
.++.++|.+++|++++.+.+|+.+.+.
T Consensus 5 ~~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 5 MAYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp TTTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 456678999999999999999999864
No 55
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=34.59 E-value=29 Score=24.04 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=19.4
Q ss_pred EEEeEEecCCCchHHHHHHHHHhcCcc
Q 003979 521 IRHSTAISALSTMHEDIFHVAEAKRVA 547 (782)
Q Consensus 521 v~~~~~v~~~~~~~~~I~~~a~~~~~d 547 (782)
+.-+.-+.| +|.++|..+|.|++.|
T Consensus 12 vslhllvdp--dmkdeiikyaqekdfd 36 (54)
T 3gxq_A 12 VSLHLLVDP--DMKDEIIKYAQEKDFD 36 (54)
T ss_dssp EEEEEEECH--HHHHHHHHHHHHHSTT
T ss_pred eEEEEeeCC--chhHHHHHHHHHccch
Confidence 334445565 9999999999999876
No 56
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=30.95 E-value=89 Score=32.03 Aligned_cols=94 Identities=17% Similarity=0.067 Sum_probs=55.0
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhc------------------CCCeEEEEEEeeecCcccccccccCCCCCCCcccCCC
Q 003979 612 KRVCIIFFGGPDDRRALDLGGRMAE------------------NPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGN 673 (782)
Q Consensus 612 ~~Ilv~~~g~~~~~~al~~a~~la~------------------~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (782)
++++|.+.||.|+.-.+.++.+... ..+.++.++++.+...
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~--------------------- 112 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET--------------------- 112 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTC---------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCC---------------------
Confidence 4799999999999998888877531 1245677787764322
Q ss_pred CcchhhhhHHHHHHHHHHhcCCcEEEEEEEe-----cChHHHHHHhhcccC-CcEEEEccCCCCcc
Q 003979 674 SFSRERELDEAAVDDFMRKWGGSVEYEEKVM-----ANVKDEVLKIGQIRD-YELVVVGKGRFPST 733 (782)
Q Consensus 674 ~~~~~~~~~~~~l~~~~~~~~~~v~~~e~~v-----~~g~~~~~~~~~~~~-~DLivvG~~g~~~~ 733 (782)
..+..++++++..+.+ +....... ..-.+.+....+... .+.+++|.|..++.
T Consensus 113 -----fpet~~fv~~~~~~yg--l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdds~ 171 (306)
T 2wsi_A 113 -----FPTLENFVLETSERYC--LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDPF 171 (306)
T ss_dssp -----CHHHHHHHHHHHHHTT--EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCSSS
T ss_pred -----CHHHHHHHHHHHHHcC--CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccccc
Confidence 2234566676665421 22111111 112233344444433 88999999984444
No 57
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=24.45 E-value=5.7e+02 Score=26.17 Aligned_cols=146 Identities=16% Similarity=0.054 Sum_probs=72.0
Q ss_pred HHHHHhcCccEEEec-ccc-----------ccc---CCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCCCCCCCc
Q 003979 538 FHVAEAKRVAMIVLP-FHK-----------QWR---REGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQT 602 (782)
Q Consensus 538 ~~~a~~~~~dlIv~g-~~~-----------~~~---~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~~~~~~~ 602 (782)
.+.|.+.++|-|=+- .|+ +.+ ..|.++.. -.....+.+.|-+....||++ +=+..+
T Consensus 150 A~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr--~r~~~eiv~avr~~v~~pv~v-ris~~~------ 220 (338)
T 1z41_A 150 AARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENR--YRFLREIIDEVKQVWDGPLFV-RVSASD------ 220 (338)
T ss_dssp HHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHH--HHHHHHHHHHHHHHCCSCEEE-EEECCC------
T ss_pred HHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhh--HHHHHHHHHHHHHHcCCcEEE-EecCcc------
Confidence 344566788888543 332 111 12333332 224566777776666888887 212111
Q ss_pred ccCccccccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcchhhhhH
Q 003979 603 VAEPAATVLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELD 682 (782)
Q Consensus 603 ~~~~~~~~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (782)
. ..+|-+.+++.++|+++.+. | +..+++......... ... .....
T Consensus 221 --------~------~~~g~~~~~~~~~a~~l~~~-G--vd~i~v~~~~~~~~~-------------~~~-----~~~~~ 265 (338)
T 1z41_A 221 --------Y------TDKGLDIADHIGFAKWMKEQ-G--VDLIDCSSGALVHAD-------------INV-----FPGYQ 265 (338)
T ss_dssp --------C------STTSCCHHHHHHHHHHHHHT-T--CCEEEEECCCSSCCC-------------CCC-----CTTTT
T ss_pred --------c------CCCCCCHHHHHHHHHHHHHc-C--CCEEEEecCccccCC-------------CCC-----Cccch
Confidence 1 22455667889999998764 4 345555442211000 000 01112
Q ss_pred HHHHHHHHHhcCCcEEEEEEEecChHHHHHHhhcccCCcEEEEccCC
Q 003979 683 EAAVDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGR 729 (782)
Q Consensus 683 ~~~l~~~~~~~~~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g 729 (782)
.+++++++...+..+.... -+.++++..+.+++ +++|+|.+||.-
T Consensus 266 ~~~~~~ir~~~~iPVi~~G-gi~s~~~a~~~l~~-G~aD~V~iGR~~ 310 (338)
T 1z41_A 266 VSFAEKIREQADMATGAVG-MITDGSMAEEILQN-GRADLIFIGREL 310 (338)
T ss_dssp HHHHHHHHHHHCCEEEECS-SCCSHHHHHHHHHT-TSCSEEEECHHH
T ss_pred HHHHHHHHHHCCCCEEEEC-CCCCHHHHHHHHHc-CCceEEeecHHH
Confidence 3455666554221111111 12234455455544 339999999986
No 58
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=23.27 E-value=3.4e+02 Score=26.91 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=30.5
Q ss_pred HHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEe-cCC
Q 003979 538 FHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLV-DRG 594 (782)
Q Consensus 538 ~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v-~r~ 594 (782)
+..|.+.++|=|=+...-. ..|. ...+|.+ +.+.+..+.||-+++ +|+
T Consensus 14 a~~A~~~GAdRIELc~~L~--~GGl------TPS~g~i-~~~~~~~~ipv~vMIRPR~ 62 (256)
T 1twd_A 14 ALTAQQNGADRVELCAAPK--EGGL------TPSLGVL-KSVRQRVTIPVHPIIRPRG 62 (256)
T ss_dssp HHHHHHTTCSEEEECBCGG--GTCB------CCCHHHH-HHHHHHCCSCEEEBCCSSS
T ss_pred HHHHHHcCCCEEEEcCCcc--cCCC------CCCHHHH-HHHHHHcCCceEEEECCCC
Confidence 4567888999998886422 1222 3345555 566777788988876 443
No 59
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=20.95 E-value=1.1e+02 Score=29.61 Aligned_cols=38 Identities=11% Similarity=-0.043 Sum_probs=29.3
Q ss_pred ceEEEeccC-----CcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 003979 612 KRVCIIFFG-----GPDDRRALDLGGRMAENPGGNVTLVRFIG 649 (782)
Q Consensus 612 ~~Ilv~~~g-----~~~~~~al~~a~~la~~~~~~l~vl~v~~ 649 (782)
++|+|...- .+.+.|++..|+++++..|.+++++-+-+
T Consensus 4 ~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~ 46 (217)
T 3ih5_A 4 NNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGT 46 (217)
T ss_dssp CCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEES
T ss_pred ccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence 456665542 36688999999999998889999887754
Done!