BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003980
(782 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 126/442 (28%), Positives = 202/442 (45%), Gaps = 78/442 (17%)
Query: 47 YEDRAKNLVSLLTLKEKV----------QQLVNTATGIPRLGVPSYEWWGEALHGVSNVG 96
Y RA LV+ +TL EK+ +Q V G+PRLG+P + +G+ VG
Sbjct: 50 YTSRAAELVAQMTLDEKISFVHWALDPDRQNVGYLPGVPRLGIPELRA-ADGPNGIRLVG 108
Query: 97 PAVRFNAMVPGATSFPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGLTYWSPNVN 156
AT+ PA + A++F+ ++ G+V+ + RA+ G P +N
Sbjct: 109 QT---------ATALPAPVALASTFDDTMADSYGKVMGRDGRALNQDMVLG-----PMMN 154
Query: 157 VFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAYDV 216
R P GR ET EDPLV S+ AV ++G+Q G + + KH+ A +
Sbjct: 155 NIRVPHGGRNYETFSEDPLVSSRTAVAQIKGIQGAG-----------LMTTAKHFAANNQ 203
Query: 217 DNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADPNLLK 276
+N +RF +A V +Q L + P F++ + G +S MC+YN +NG P+C + LL
Sbjct: 204 EN----NRFSVNANVDEQTLREIEFPAFEASSKAG-AASFMCAYNGLNGKPSCGNDELLN 258
Query: 277 GVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATP-EDAVALALNAGLNMNC-GD------- 327
V+R QWG G+++SD + ATP DA+ L+ + + GD
Sbjct: 259 NVLRTQWGFQGWVMSD------------WLATPGTDAITKGLDQEMGVELPGDVPKGEPS 306
Query: 328 ----YLGKYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCT 383
+ G+ + AV V E+ V ++ + + G P +P +
Sbjct: 307 PPAKFFGEALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLLATPAPRP-------ERDK 359
Query: 384 DDHKSLALDAARQGIVLLGNNG-ALPLSSNATQNLAVIGPNANATNVM-ISNYAGIPCGY 441
++++ A G VLL N G ALPL+ +A +++AVIGP A V + + +P
Sbjct: 360 AGAQAVSRKVAENGAVLLRNEGQALPLAGDAGKSIAVIGPTAVDPKVTGLGSAHVVPDSA 419
Query: 442 TSPLQGLQKYVSA---VTYAPG 460
+PL ++ A VTY G
Sbjct: 420 AAPLDTIKARAGAGATVTYETG 441
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 113/242 (46%), Gaps = 36/242 (14%)
Query: 498 EGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNRKIGGILWVGYPG 557
EG+DR NL+LPG Q+KL+ VA+A T++++ + + +K+ +L + YPG
Sbjct: 579 EGVDRPNLSLPGTQDKLISAVADANPNTIVVLNTGSSVLMPWLSKTR----AVLDMWYPG 634
Query: 558 QAGGDAIAQIIFGDYNPAGR--SPFTWYPQQYV-----DQLPMTDMNMRANATANLPGRT 610
QAG +A A +++GD NP+G+ F Q+ P D ++ R
Sbjct: 635 QAGAEATAALLYGDVNPSGKLTQSFPAAENQHAVAGDPTSYPGVDNQQTYREGIHVGYRW 694
Query: 611 YRFYSGKTVYPFGHGLSYSSFSKFIVSAPSTVLIKKNRNSIHSSHAQAIDVTTVNCKDLH 670
+ + K ++PFGHGLSY+SF++ SAP T V
Sbjct: 695 FDKENVKPLFPFGHGLSYTSFTQ---SAP----------------------TVVRTSTGG 729
Query: 671 FHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDV 730
V + V+N+G +G VV + TA +LVG+ +V + G+ K VTV D
Sbjct: 730 LKVTVTVRNSGKRAGQEVVQAYLGASPNVTAPQAKKKLVGYTKVSLAAGEAKTVTVNVDR 789
Query: 731 CQ 732
Q
Sbjct: 790 RQ 791
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 161/654 (24%), Positives = 275/654 (42%), Gaps = 121/654 (18%)
Query: 49 DRAKNLVSLLTLKEKVQQLVNT---------------ATG----IPRLGVPSYEWWGEAL 89
++ ++S LTL+EKV+ +V A G +PR+G+P++
Sbjct: 2 EKVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF------- 54
Query: 90 HGVSNVGPA-VRFNAMVPG------ATSFPAVILSAASFNASLWLKMGQVVSTEARAMYN 142
V GPA +R N T+FP I+ A+++N L ++G+ + E R Y
Sbjct: 55 --VLADGPAGLRINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YG 111
Query: 143 VGQAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRL 202
V +P +N+ R+P GR E EDP++ + A ++V+G+Q G
Sbjct: 112 VD----VLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG---------- 157
Query: 203 KVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNR 262
V +C KH+ A N + +R D V+++ L + Y F+ V++ SVM +YN+
Sbjct: 158 -VGACIKHFVA----NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNK 212
Query: 263 VNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLN 322
+NG + LLK V+R++WG +G+++SD D + D + +N
Sbjct: 213 LNGKYCSQNEWLLKKVLREEWGFEGFVMSDW---YAGDNPVEQLKAGNDLIMPGKAYQVN 269
Query: 323 MNCGDYLGKYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVC 382
D + + E A+ K+ E V+D+ + VL+ F S +
Sbjct: 270 TERRDEIEEIME-ALKEGKLSEEVLDECVRNILKVLVNAPSFKNYRYS--------NKPD 320
Query: 383 TDDHKSLALDAARQGIVLLGNNGALPLSSNATQNLAVIGPNANATNVMISNYAGIPCGYT 442
+ H +A +A +G+VLL N ALPLS N+ +A+ G T + + G G T
Sbjct: 321 LEKHAKVAYEAGAEGVVLLRNEEALPLSENS--KIALFG-----TGQIETIKGGTGSGDT 373
Query: 443 SP------LQGLQK------------YVSAVTYAPGCSNVKCKDDS---LIEPXXXXXXX 481
P L+G+++ Y + K + DS +I+P
Sbjct: 374 HPRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFL 433
Query: 482 XXXXXXXXG--------LDQSIEAEGLDRE----NLTLPGYQEKLVMEVANA--TKGTVI 527
+ I EG DR+ + L + L+ V+ +G +
Sbjct: 434 SEKEIHKLAKKNDVAVIVISRISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKV 493
Query: 528 LVVMAAG-PVDISFAKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQ 586
+V++ G PV++ + + GIL V GQ G +A ++ G NP+G+ P T +P+
Sbjct: 494 IVLLNIGSPVEVVSWRD--LVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRD 550
Query: 587 YVDQLPMT--------DMNMRANATANLPGRTYRFYSGKTVYPFGHGLSYSSFS 632
Y D T + + R Y + + Y FG+GLSY++F
Sbjct: 551 YSDVPSWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFE 604
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 160/654 (24%), Positives = 275/654 (42%), Gaps = 121/654 (18%)
Query: 49 DRAKNLVSLLTLKEKVQQLVNT---------------ATG----IPRLGVPSYEWWGEAL 89
++ ++S LTL+EKV+ +V A G +PR+G+P++
Sbjct: 2 EKVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF------- 54
Query: 90 HGVSNVGPA-VRFNAMVPG------ATSFPAVILSAASFNASLWLKMGQVVSTEARAMYN 142
V GPA +R N T+FP I+ A+++N L ++G+ + E R Y
Sbjct: 55 --VLADGPAGLRINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YG 111
Query: 143 VGQAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRL 202
V +P +N+ R+P GR E EDP++ + A ++V+G+Q G
Sbjct: 112 VD----VLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG---------- 157
Query: 203 KVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNR 262
V +C KH+ A N + +R D V+++ L + Y F+ V++ SVM +YN+
Sbjct: 158 -VGACIKHFVA----NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNK 212
Query: 263 VNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLN 322
+NG + LLK V+R++WG +G+++S + D + D + +N
Sbjct: 213 LNGKYCSQNEWLLKKVLREEWGFEGFVMS---AWYAGDNPVEQLKAGNDLIMPGKAYQVN 269
Query: 323 MNCGDYLGKYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVC 382
D + + E A+ K+ E V+D+ + VL+ F S +
Sbjct: 270 TERRDEIEEIME-ALKEGKLSEEVLDECVRNILKVLVNAPSFKNYRYS--------NKPD 320
Query: 383 TDDHKSLALDAARQGIVLLGNNGALPLSSNATQNLAVIGPNANATNVMISNYAGIPCGYT 442
+ H +A +A +G+VLL N ALPLS N+ +A+ G T + + G G T
Sbjct: 321 LEKHAKVAYEAGAEGVVLLRNEEALPLSENS--KIALFG-----TGQIETIKGGTGSGDT 373
Query: 443 SP------LQGLQK------------YVSAVTYAPGCSNVKCKDDS---LIEPXXXXXXX 481
P L+G+++ Y + K + DS +I+P
Sbjct: 374 HPRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFL 433
Query: 482 XXXXXXXXG--------LDQSIEAEGLDRE----NLTLPGYQEKLVMEVANA--TKGTVI 527
+ I EG DR+ + L + L+ V+ +G +
Sbjct: 434 SEKEIHKLAKKNDVAVIVISRISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKV 493
Query: 528 LVVMAAG-PVDISFAKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQ 586
+V++ G PV++ + + GIL V GQ G +A ++ G NP+G+ P T +P+
Sbjct: 494 IVLLNIGSPVEVVSWRD--LVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRD 550
Query: 587 YVDQLPMT--------DMNMRANATANLPGRTYRFYSGKTVYPFGHGLSYSSFS 632
Y D T + + R Y + + Y FG+GLSY++F
Sbjct: 551 YSDVPSWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFE 604
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 179/365 (49%), Gaps = 37/365 (10%)
Query: 77 LGVPSYEWWGEALHGVSNVGPAVRFNAMVPGATSFPAVILSAASFNASLWLKMGQVVSTE 136
+ +P+ W +A+HG SNV GAT FP I A+ + L ++GQ + E
Sbjct: 101 IAIPTV-WGTDAMHGHSNV----------YGATLFPHNIGLGAARDTDLIKRIGQATAKE 149
Query: 137 ARAMYNVGQAGLTY-WSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQ-EIGDS 194
V G+ + ++P V V RD RWGR E+ EDP +V +YA V G+Q ++G
Sbjct: 150 ------VAATGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGAD 203
Query: 195 KNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVS 254
S+R+ + KH+ D +GVDR + + ++ L D + + S + +G V
Sbjct: 204 FLKGSNRI---ATAKHFVG-DGGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQ 256
Query: 255 SVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVA 314
SVM S+N NG D +LL V+++Q G DG++VSD ++ + + + A
Sbjct: 257 SVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFVE------GCDLEQCA 310
Query: 315 LALNAGLN-MNCGDYLGKYTENAVNMSK---VKESVVDQALIYNYIVLMRLGFFDGDPKS 370
A+NAG++ + ++ + N V K + ES ++ A+ +R G F S
Sbjct: 311 QAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPS 370
Query: 371 QPLGNLGPSDVCTDDHKSLALDAARQGIVLLGNNGALPLSSNATQNLAVIGPNANATNVM 430
+ P + +H++LA +A R+ +VLL NN ++ L A+ + V G ANA N+
Sbjct: 371 ARPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNESI-LPIKASSRILVAGKGANAINMQ 429
Query: 431 ISNYA 435
++
Sbjct: 430 AGGWS 434
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 179/365 (49%), Gaps = 37/365 (10%)
Query: 77 LGVPSYEWWGEALHGVSNVGPAVRFNAMVPGATSFPAVILSAASFNASLWLKMGQVVSTE 136
+ +P+ W +A+HG SNV GAT FP I A+ + L ++GQ + E
Sbjct: 101 IAIPTV-WGTDAMHGHSNV----------YGATLFPHNIGLGAARDTDLIKRIGQATAKE 149
Query: 137 ARAMYNVGQAGLTY-WSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQ-EIGDS 194
V G+ + ++P V V RD RWGR E+ EDP +V +YA V G+Q ++G
Sbjct: 150 ------VAATGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGAD 203
Query: 195 KNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVS 254
S+R+ + KH+ D +GVDR + + ++ L D + + S + +G V
Sbjct: 204 FLKGSNRI---ATAKHFVG-DGGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQ 256
Query: 255 SVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVA 314
SVM S+N NG D +LL V+++Q G DG++VSD ++ + + + A
Sbjct: 257 SVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFVE------GCDLEQCA 310
Query: 315 LALNAGLN-MNCGDYLGKYTENAVNMSK---VKESVVDQALIYNYIVLMRLGFFDGDPKS 370
A+NAG++ + ++ + N V K + ES ++ A+ +R G F S
Sbjct: 311 QAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPS 370
Query: 371 QPLGNLGPSDVCTDDHKSLALDAARQGIVLLGNNGALPLSSNATQNLAVIGPNANATNVM 430
+ P + +H++LA +A R+ +VLL NN ++ L A+ + V G ANA N+
Sbjct: 371 ARPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNESI-LPIKASSRILVAGKGANAINMQ 429
Query: 431 ISNYA 435
++
Sbjct: 430 AGGWS 434
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 181/721 (25%), Positives = 304/721 (42%), Gaps = 130/721 (18%)
Query: 96 GP-AVRFNAMVPGATSFPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGL-TYWSP 153
GP VR++ G+T+F + +A++++ +L + GQ + E +A +G+ P
Sbjct: 62 GPLGVRYST---GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKA------SGIHVILGP 112
Query: 154 NVNVF-RDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYT 212
+ P+ GR E G DP + + G+Q +G V + KHY
Sbjct: 113 VAGPLGKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQSVG-----------VQATAKHY- 160
Query: 213 AYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADP 272
+ N + ++R + + L + Y PF VQ +V+SVMCSYN+VN C D
Sbjct: 161 ---ILNEQELNRETISSNPDDRTLHELYTWPFADAVQA-NVASVMCSYNKVNTTWACEDQ 216
Query: 273 NLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNA-GLNMNCGDYL-G 330
L+ V++DQ G GY+++D ++ ++T L ++ G + N + L G
Sbjct: 217 YTLQTVLKDQLGFPGYVMTDWNA--------QHTTVQSANSGLDMSMPGTDFNGNNRLWG 268
Query: 331 KYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCTDDHKSLA 390
NAVN ++V S VD + +L D P N+ S +HK+
Sbjct: 269 PALTNAVNSNQVPTSRVDDMVTR---ILAAWYLTGQDQAGYPSFNI--SRNVQGNHKTNV 323
Query: 391 LDAARQGIVLLGNNG-ALPLSSNATQNLAVIGPNA----NATNVMISNYAGIPCG----- 440
AR GIVLL N+ LPL A+ +AV+G A +A N N G G
Sbjct: 324 RAIARDGIVLLKNDANILPLKKPAS--IAVVGSAAIIGNHARNSPSCNDKGCDDGALGMG 381
Query: 441 ----------YTSPL---------QGLQKYVSAV-TYAPGCSNVKCKDDSLIEPXXXXXX 480
+ +P QG Q +S + G S + KD +++
Sbjct: 382 WGSGAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGASAARGKDVAIVFITADSGE 441
Query: 481 XXXXXXXXXGLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISF 540
++E DR NL LV VA A VI+VV + G + +
Sbjct: 442 GYI----------TVEGNAGDRNNLDPWHNGNALVQAVAGANS-NVIVVVHSVGAIILEQ 490
Query: 541 AKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQYVDQLPMTDMNMRA 600
+ ++ ++W G P Q G+A+ +++GD +P+G+ +T + + P D N R
Sbjct: 491 ILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYT------IAKSP-NDYNTRI 543
Query: 601 NATANLPGRTYRFYSGKTV-------------YPFGHGLSYSSFSKFIVSAPSTVLIKKN 647
+ G + F G + Y FG+GLSY+ F+ +S ST
Sbjct: 544 -----VSGGSDSFSEGLFIDYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTA----- 593
Query: 648 RNSIHSSHAQAIDVTTVNCKDLHFH---VVIGVKNNGPMSGSHVVLIFWKPPSASTAGAP 704
S V DL + V + + N+G ++G+ V ++ PS++ P
Sbjct: 594 -----KSGPATGAVVPGGPSDLFQNVATVTVDIANSGQVTGAEVAQLYITYPSSAPRTPP 648
Query: 705 NVELVGFERVDVQKGKTKNVTVGFDV-CQGLNLVDTDGQRKLV-IGLHTLIVGSPSERQV 762
+L GF ++++ G++ T F++ + L+ DT Q+ +V G + VG+ S R +
Sbjct: 649 K-QLRGFAKLNLTPGQSGTAT--FNIRRRDLSYWDTASQKWVVPSGSFGISVGA-SSRDI 704
Query: 763 R 763
R
Sbjct: 705 R 705
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 181/721 (25%), Positives = 305/721 (42%), Gaps = 130/721 (18%)
Query: 96 GP-AVRFNAMVPGATSFPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGL-TYWSP 153
GP VR++ G+T+F + +A++++ +L + GQ + E +A +G+ P
Sbjct: 63 GPLGVRYST---GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKA------SGIHVILGP 113
Query: 154 NVN-VFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYT 212
+ + P+ GR E G DP + + G+Q +G V + KHY
Sbjct: 114 VAGPLGKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQSVG-----------VQATAKHY- 161
Query: 213 AYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADP 272
+ N + ++R + + L + Y PF VQ +V+SVMCSYN+VN C D
Sbjct: 162 ---ILNEQELNRETISSNPDDRTLHELYTWPFADAVQA-NVASVMCSYNKVNTTWACEDQ 217
Query: 273 NLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNA-GLNMNCGDYL-G 330
L+ V++DQ G GY+++D ++ ++T L ++ G + N + L G
Sbjct: 218 YTLQTVLKDQLGFPGYVMTDWNA--------QHTTVQSANSGLDMSMPGTDFNGNNRLWG 269
Query: 331 KYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCTDDHKSLA 390
NAVN ++V S VD + +L D P N+ S +HK+
Sbjct: 270 PALTNAVNSNQVPTSRVDDMVTR---ILAAWYLTGQDQAGYPSFNI--SRNVQGNHKTNV 324
Query: 391 LDAARQGIVLLGNNG-ALPLSSNATQNLAVIGPNA----NATNVMISNYAGIPCG----- 440
AR GIVLL N+ LPL A+ +AV+G A +A N N G G
Sbjct: 325 RAIARDGIVLLKNDANILPLKKPAS--IAVVGSAAIIGNHARNSPSCNDKGCDDGALGMG 382
Query: 441 ----------YTSPL---------QGLQKYVSAV-TYAPGCSNVKCKDDSLIEPXXXXXX 480
+ +P QG Q +S + G S + KD +++
Sbjct: 383 WGSGAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGASAARGKDVAIVFITADSGE 442
Query: 481 XXXXXXXXXGLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISF 540
++E DR NL LV VA A VI+VV + G + +
Sbjct: 443 GYI----------TVEGNAGDRNNLDPWHNGNALVQAVAGANS-NVIVVVHSVGAIILEQ 491
Query: 541 AKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQYVDQLPMTDMNMRA 600
+ ++ ++W G P Q G+A+ +++GD +P+G+ +T + + P D N R
Sbjct: 492 ILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYT------IAKSP-NDYNTRI 544
Query: 601 NATANLPGRTYRFYSGKTV-------------YPFGHGLSYSSFSKFIVSAPSTVLIKKN 647
+ G + F G + Y FG+GLSY+ F+ +S ST
Sbjct: 545 -----VSGGSDSFSEGLFIDYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTA----- 594
Query: 648 RNSIHSSHAQAIDVTTVNCKDLHFH---VVIGVKNNGPMSGSHVVLIFWKPPSASTAGAP 704
S V DL + V + + N+G ++G+ V ++ PS++ P
Sbjct: 595 -----KSGPATGAVVPGGPSDLFQNVATVTVDIANSGQVTGAEVAQLYITYPSSAPRTPP 649
Query: 705 NVELVGFERVDVQKGKTKNVTVGFDV-CQGLNLVDTDGQRKLV-IGLHTLIVGSPSERQV 762
+L GF ++++ G++ T F++ + L+ DT Q+ +V G + VG+ S R +
Sbjct: 650 K-QLRGFAKLNLTPGQSGTAT--FNIRRRDLSYWDTASQKWVVPSGSFGISVGA-SSRDI 705
Query: 763 R 763
R
Sbjct: 706 R 706
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 152/625 (24%), Positives = 254/625 (40%), Gaps = 120/625 (19%)
Query: 40 FCNSSLTYEDRAKNLVSLLTLKEKVQQ---------------------LVNTATGIPRLG 78
+ +++ EDR +L+ +TL EK+ Q L++ +PR G
Sbjct: 5 YKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKG 64
Query: 79 VPSYEW---------------------WG-EALHGVSNVGPAVRFNAMVPGATSFPAVIL 116
+ EW +G +A+HG +NV GAT FP +
Sbjct: 65 ATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNV----------YGATIFPHNVG 114
Query: 117 SAASFNASLWLKMGQVVSTEARAMYNVGQAGLTY-WSPNVNVFRDPRWGRGQETPGEDPL 175
A+ + L ++G+ + E RA G+ Y ++P + V RDPRWGR E+ ED
Sbjct: 115 LGATRDPYLVKRIGEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRR 168
Query: 176 VVSKYAVNYVRGLQEIGDSKNSSSDRL-------KVSSCCKHYTAYDVDNWKGVDRFHFD 228
+V + GLQ GD + + KV++C KH+ D G++ +
Sbjct: 169 IVQSM-TELIPGLQ--GDVPKDFTSGMPFVAGKNKVAACAKHFVG-DGGTVDGIN--ENN 222
Query: 229 AKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGY 288
+ ++ L + + P +K+ + +G VS+VM SY+ NG+ A+ +L+ G ++D G+
Sbjct: 223 TIINREGLMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGF 281
Query: 289 IVSDCDSIQVYDT--AIRYTATPEDAVALALNAGLNMNCGDYLGKYTENAVNMSKVKESV 346
++SD + I T Y+ + + ++ L+ + N VN + S
Sbjct: 282 VISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSR 341
Query: 347 VDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCTDDHKSLALDAARQGIVLLGNNGA 406
+D A+ V +G F+ +P + P + +H+ LA +AAR+ +VLL N
Sbjct: 342 IDDAVTRILRVKFTMGLFE-NPYADP---AMAEQLGKQEHRDLAREAARKSLVLLKNGKT 397
Query: 407 ------LPLSSNATQNLAVIGPNANATNVMISNYAGIPC-GYTSPLQG-----------L 448
LPL A + L ++A N+ G C G+T QG L
Sbjct: 398 STDAPLLPLPKKAPKILVA---GSHADNL------GYQCGGWTIEWQGDTGRTTVGTTIL 448
Query: 449 QKYVSAVTYAPGCSNVKCKDDSLIEPXXXXXXXXXXXXXXXGLDQSIEAEGLDRENLTLP 508
+ +AV + + D ++ G E +G D NLT+P
Sbjct: 449 EAVKAAVDPSTVVVFAENPDAEFVK-----SGGFSYAIVAVGEHPYTETKG-DNLNLTIP 502
Query: 509 GYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNRKIGGILWVGYPGQAGGDAIAQII 568
V V + +L+ V A S+ + L PG G + +
Sbjct: 503 EPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDALVAAWL----PGSE-GQGVTDAL 557
Query: 569 FGDYNPAGRSPFTWYPQQYVDQLPM 593
FGD+ GR P TW+ + VDQLPM
Sbjct: 558 FGDFGFTGRLPRTWF--KSVDQLPM 580
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 152/625 (24%), Positives = 254/625 (40%), Gaps = 120/625 (19%)
Query: 40 FCNSSLTYEDRAKNLVSLLTLKEKVQQ---------------------LVNTATGIPRLG 78
+ +++ EDR +L+ +TL EK+ Q L++ +PR G
Sbjct: 5 YKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKG 64
Query: 79 VPSYEW---------------------WG-EALHGVSNVGPAVRFNAMVPGATSFPAVIL 116
+ EW +G +A+HG +NV GAT FP +
Sbjct: 65 ATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNV----------YGATIFPHNVG 114
Query: 117 SAASFNASLWLKMGQVVSTEARAMYNVGQAGLTY-WSPNVNVFRDPRWGRGQETPGEDPL 175
A+ + L ++G+ + E RA G+ Y ++P + V RDPRWGR E+ ED
Sbjct: 115 LGATRDPYLVKRIGEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRR 168
Query: 176 VVSKYAVNYVRGLQEIGDSKNSSSDRL-------KVSSCCKHYTAYDVDNWKGVDRFHFD 228
+V + GLQ GD + + KV++C KH+ D G++ +
Sbjct: 169 IVQSM-TELIPGLQ--GDVPKDFTSGMPFVAGKNKVAACAKHFVG-DGGTVDGIN--ENN 222
Query: 229 AKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGY 288
+ ++ L + + P +K+ + +G VS+VM SY+ NG+ A+ +L+ G ++D G+
Sbjct: 223 TIINREGLMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGF 281
Query: 289 IVSDCDSIQVYDT--AIRYTATPEDAVALALNAGLNMNCGDYLGKYTENAVNMSKVKESV 346
++SD + I T Y+ + + ++ L+ + N VN + S
Sbjct: 282 VISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSR 341
Query: 347 VDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCTDDHKSLALDAARQGIVLLGNNGA 406
+D A+ V +G F+ +P + P + +H+ LA +AAR+ +VLL N
Sbjct: 342 IDDAVTRILRVKFTMGLFE-NPYADP---AMAEQLGKQEHRDLAREAARKSLVLLKNGKT 397
Query: 407 ------LPLSSNATQNLAVIGPNANATNVMISNYAGIPC-GYTSPLQG-----------L 448
LPL A + L ++A N+ G C G+T QG L
Sbjct: 398 STDAPLLPLPKKAPKILVA---GSHADNL------GYQCGGWTIEWQGDTGRTTVGTTIL 448
Query: 449 QKYVSAVTYAPGCSNVKCKDDSLIEPXXXXXXXXXXXXXXXGLDQSIEAEGLDRENLTLP 508
+ +AV + + D ++ G E +G D NLT+P
Sbjct: 449 EAVKAAVDPSTVVVFAENPDAEFVK-----SGGFSYAIVAVGEHPYTETKG-DNLNLTIP 502
Query: 509 GYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNRKIGGILWVGYPGQAGGDAIAQII 568
V V + +L+ V A S+ + L PG G + +
Sbjct: 503 EPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDALVAAWL----PGSE-GQGVTDAL 557
Query: 569 FGDYNPAGRSPFTWYPQQYVDQLPM 593
FGD+ GR P TW+ + VDQLPM
Sbjct: 558 FGDFGFTGRLPRTWF--KSVDQLPM 580
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 110/434 (25%), Positives = 178/434 (41%), Gaps = 69/434 (15%)
Query: 52 KNLVSLLTLKEKVQQLVNT----ATGIPRLGVPSYEWWGEALHGVSNVGPAVRFNAMVPG 107
+ L+S L EK+ L I RLG+P+ VS+ +R G
Sbjct: 7 EQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVR--------VSDGPNGIRGTKFFDG 58
Query: 108 ATS--FPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGLTYWSPNVNVFRDPRWGR 165
S FP A++F+ L G++++ E+ + + P N+ R P GR
Sbjct: 59 VPSGCFPNGTGLASTFDRDLLETAGKLMAKES-----IAKNAAVILGPTTNMQRGPLGGR 113
Query: 166 GQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRF 225
G E+ EDP + + V+G+Q G +++ KH+ D+++ RF
Sbjct: 114 GFESFSEDPYLAGMATSSVVKGMQGEG-----------IAATVKHFVCNDLED----QRF 158
Query: 226 HFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGL 285
++ V+++ L + Y PF+ V+ + +M +YN+VNG LL ++RD+W
Sbjct: 159 SSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKW 218
Query: 286 DGYIVSDCDSIQVYDTAIRYTATPE----------DAVALALNAGLNMNCGDYLGKYTEN 335
DG ++SD AI+ E V+ +LN+ + D +
Sbjct: 219 DGMLMSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTED----VDDR 274
Query: 336 AVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCTDDHKSLALDAAR 395
+ K+ + VVD L + G + P+S SD+ + +A D+
Sbjct: 275 VRQVLKMIKFVVDN--------LEKTGIVENGPESTSNNTKETSDLL----RKIAADS-- 320
Query: 396 QGIVLLGN-NGALPLSSNATQNLAVIGPNANATNVMISNYAGIPCGY-TSPLQGL-QKYV 452
IVLL N N LPL N+ VIGPNA A A + Y SP +G+ K
Sbjct: 321 --IVLLKNKNNILPLKKE--DNIIVIGPNAKAKTSSGGGSASMNSYYVVSPYEGIVNKLG 376
Query: 453 SAVTYAPGCSNVKC 466
V Y G + K
Sbjct: 377 KEVDYTVGAYSHKS 390
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 125/279 (44%), Gaps = 43/279 (15%)
Query: 490 GLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNRKIGG 549
GL+ E EG DREN+ LP +LV V A TVI V + PV+ + +
Sbjct: 582 GLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVI-VNQSGTPVEFPWLED---ANA 637
Query: 550 ILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQYVDQLPMTDMNMRANATANLPGR 609
++ Y G G+AIA +++GD P G+ +W P + D +N + + G
Sbjct: 638 LVQAWYGGNELGNAIADVLYGDVVPNGKLSLSW-PFKLQDNPAF--LNFKTEFGRVIYGE 694
Query: 610 T----YRFYSG---KTVYPFGHGLSYSSFSKFIVSAPSTVLIKKNRNSIHSSHAQAIDVT 662
YR+Y K +PFG+GLSY++F +D++
Sbjct: 695 DIFVGYRYYEKLQRKVAFPFGYGLSYTTFE--------------------------LDIS 728
Query: 663 TVNCKDLHFHVVIGVKNNG-PMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKT 721
D + + VKN G +GS VV +++ + S P EL GFE+V ++ G+
Sbjct: 729 DFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALN-SKVSRPVKELKGFEKVHLEPGEK 787
Query: 722 KNVTVGFDVCQGLNLVDTD-GQRKLVIGLHTLIVGSPSE 759
K V + ++ ++ + + G+ + G + + VG+ S+
Sbjct: 788 KTVNIDLELKDAISYFNEELGKWHVEAGEYLVSVGTSSD 826
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 43/279 (15%)
Query: 490 GLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNRKIGG 549
GL+ E EG DREN LP +LV V A TVI V + PV+ + +
Sbjct: 582 GLNGEWETEGYDRENXDLPKRTNELVRAVLKANPNTVI-VNQSGTPVEFPWLED---ANA 637
Query: 550 ILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQYVDQLPMTDMNMRANATANLPGR 609
++ Y G G+AIA +++GD P G+ +W P + D +N + + G
Sbjct: 638 LVQAWYGGNELGNAIADVLYGDVVPNGKLSLSW-PFKLQDNPAF--LNFKTEFGRVIYGE 694
Query: 610 T----YRFYSG---KTVYPFGHGLSYSSFSKFIVSAPSTVLIKKNRNSIHSSHAQAIDVT 662
YR+Y K +PFG+GLSY++F +D++
Sbjct: 695 DIFVGYRYYEKLQRKVAFPFGYGLSYTTFE--------------------------LDIS 728
Query: 663 TVNCKDLHFHVVIGVKNNG-PMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKT 721
D + + VKN G +GS VV +++ + S P EL GFE+V ++ G+
Sbjct: 729 DFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALN-SKVSRPVKELKGFEKVHLEPGEK 787
Query: 722 KNVTVGFDVCQGLNLVDTD-GQRKLVIGLHTLIVGSPSE 759
K V + ++ ++ + + G+ + G + + VG+ S+
Sbjct: 788 KTVNIDLELKDAISYFNEELGKWHVEAGEYLVSVGTSSD 826
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 109/434 (25%), Positives = 171/434 (39%), Gaps = 69/434 (15%)
Query: 52 KNLVSLLTLKEKVQQLVNT----ATGIPRLGVPSYEWWGEALHGVSNVGPAVRFNAMVPG 107
+ L+S L EK+ L I RLG+P+ VS+ +R G
Sbjct: 7 EQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVR--------VSDGPNGIRGTKFFDG 58
Query: 108 ATS--FPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGLTYWSPNVNVFRDPRWGR 165
S FP A++F+ L G++ + E+ + + P N R P GR
Sbjct: 59 VPSGCFPNGTGLASTFDRDLLETAGKLXAKES-----IAKNAAVILGPTTNXQRGPLGGR 113
Query: 166 GQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRF 225
G E+ EDP + + V+G Q G +++ KH+ D+++ RF
Sbjct: 114 GFESFSEDPYLAGXATSSVVKGXQGEG-----------IAATVKHFVCNDLED----QRF 158
Query: 226 HFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGL 285
++ V+++ L + Y PF+ V+ + + +YN+VNG LL ++RD+W
Sbjct: 159 SSNSIVSERALREIYLEPFRLAVKHANPVCIXTAYNKVNGEHCSQSKKLLIDILRDEWKW 218
Query: 286 DGYIVSDCDSIQVYDTAIRYTATPE----------DAVALALNAGLNMNCGDYLGKYTEN 335
DG + SD AI+ E V+ +LN+ + D +
Sbjct: 219 DGXLXSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDV----DDR 274
Query: 336 AVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCTDDHKSLALDAAR 395
+ K + VVD L + G + P+S SD+ + +A D+
Sbjct: 275 VRQVLKXIKFVVDN--------LEKTGIVENGPESTSNNTKETSDLL----RKIAADS-- 320
Query: 396 QGIVLLGN-NGALPLSSNATQNLAVIGPNANATNVMISNYAGIPCGY-TSPLQGL-QKYV 452
IVLL N N LPL N+ VIGPNA A A Y SP +G+ K
Sbjct: 321 --IVLLKNKNNILPLKKE--DNIIVIGPNAKAKTSSGGGSASXNSYYVVSPYEGIVNKLG 376
Query: 453 SAVTYAPGCSNVKC 466
V Y G + K
Sbjct: 377 KEVDYTVGAYSHKS 390
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 15/151 (9%)
Query: 201 RLKVSSCCKHYTAY---DVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEG-HVSSV 256
R V+ C KH+ + D+ + R ++ +L+ PF++ + E + +
Sbjct: 170 REGVAPCAKHFPGHGDTHQDSHLALPRV----SKSRAELDAGELAPFRALLPETPAIXTA 225
Query: 257 MCSYNRVNGI-PTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVAL 315
Y+ ++ P P +L G++R++WG DG IV+D Q D +A
Sbjct: 226 HIVYDALDAEHPATLSPRILTGLLREEWGYDGVIVTDSXGXQAIDANYGRG----EAAVR 281
Query: 316 ALNAGLNMNCGDYLGKYTENAVNMSKVKESV 346
AL AG ++ LG+ ++ V E V
Sbjct: 282 ALRAGADLVXA--LGRREVQQATLAAVAEYV 310
>pdb|3GS6|A Chain A, Vibrio Cholerea Family 3 Glycoside Hydrolase (Nagz)in
Complex With N- Butyryl-Pugnac
pdb|3GSM|A Chain A, Vibrio Cholerae Family 3 Glycoside Hydrolase (Nagz) Bound
To N- Valeryl-Pugnac
Length = 340
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 166 GQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRF 225
G GED V K++ ++RG++ +G +++ KH+ + +
Sbjct: 128 GNRAFGEDVQTVLKHSSAFLRGMKAVG-----------MATTGKHFPGHGAV----IADS 172
Query: 226 HFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCS---YNRVNGIPTCADPNLLKGVVRDQ 282
H + +++ F++ ++ G + ++M + Y + P LK V+R++
Sbjct: 173 HLETPYDERETIAQDMAIFRAQIEAGVLDAMMPAHVVYPHYDAQPASGSSYWLKQVLREE 232
Query: 283 WGLDGYIVSDCDSIQ 297
G G + SD S++
Sbjct: 233 LGFKGIVFSDDLSME 247
>pdb|1Y65|A Chain A, Crystal Structure Of Beta-Hexosaminidase From Vibrio
Cholerae In Complex With N-Acetyl-D-Glucosamine To A
Resolution Of 1.85
Length = 342
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 166 GQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRF 225
G GED V K++ ++RG++ +G +++ KH+ + +
Sbjct: 130 GNRAFGEDVQTVLKHSSAFLRGMKAVG-----------MATTGKHFPGHGAV----IADS 174
Query: 226 HFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCS---YNRVNGIPTCADPNLLKGVVRDQ 282
H + +++ F++ ++ G + ++M + Y + P LK V+R++
Sbjct: 175 HLETPYDERETIAQDMAIFRAQIEAGVLDAMMPAHVVYPHYDAQPASGSSYWLKQVLREE 234
Query: 283 WGLDGYIVSDCDSIQ 297
G G + SD S++
Sbjct: 235 LGFKGIVFSDDLSME 249
>pdb|2OXN|A Chain A, Vibrio Cholerae Family 3 Glycoside Hydrolase (Nagz) In
Complex With Pugnac
Length = 340
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 166 GQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRF 225
G GED V K++ ++RG++ +G +++ KH+ + +
Sbjct: 128 GNRAFGEDVQTVLKHSSAFLRGMKAVG-----------MATTGKHFPGHGAV----IADS 172
Query: 226 HFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCS---YNRVNGIPTCADPNLLKGVVRDQ 282
H + +++ F++ ++ G + ++M + Y + P LK V+R++
Sbjct: 173 HLETPYDERETIAQDMAIFRAQIEAGVLDAMMPAHVVYPHYDAQPASGSSYWLKQVLREE 232
Query: 283 WGLDGYIVSDCDSIQ 297
G G + SD S++
Sbjct: 233 LGFKGIVFSDDLSME 247
>pdb|1R7L|A Chain A, 2.0 A Crystal Structure Of A Phage Protein From Bacillus
Cereus Atcc 14579
pdb|1R7L|B Chain B, 2.0 A Crystal Structure Of A Phage Protein From Bacillus
Cereus Atcc 14579
Length = 110
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 219 WKGVDRFHFDAKVTKQDLEDTYQ 241
W+ V++ +D KVTK DL+ YQ
Sbjct: 53 WQVVEKLEYDVKVTKTDLKPKYQ 75
>pdb|2RAL|A Chain A, Crystal Structure Analysis Of Double Cysteine Mutant Of
S.Epidermidis Adhesin Sdrg: Evidence For The Dock,Lock
And Latch Ligand Binding Mechanism
pdb|2RAL|B Chain B, Crystal Structure Analysis Of Double Cysteine Mutant Of
S.Epidermidis Adhesin Sdrg: Evidence For The Dock,Lock
And Latch Ligand Binding Mechanism
Length = 340
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 294 DSIQVYDTAIRYTATPEDAVALALNAGLNMNCGDY--------LGKYTENAVNMSKVKES 345
DS ++YD + T +D L N +N+N G+ + KY N + + ++++
Sbjct: 244 DSNRIYDYSEYEDVTNDDYAQLGNNNDVNINFGNIDSPYIIKVISKYDPNKDDYTTIQQT 303
Query: 346 VVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVC 382
V Q I Y R +D G D+C
Sbjct: 304 VTMQTTINEYTGEFRTASYDNTIAFSTSSGQGQGDLC 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,321,189
Number of Sequences: 62578
Number of extensions: 968175
Number of successful extensions: 1946
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1872
Number of HSP's gapped (non-prelim): 30
length of query: 782
length of database: 14,973,337
effective HSP length: 106
effective length of query: 676
effective length of database: 8,340,069
effective search space: 5637886644
effective search space used: 5637886644
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)