Query 003980
Match_columns 782
No_of_seqs 358 out of 1888
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 15:24:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 2E-165 4E-170 1462.9 71.9 731 23-758 27-772 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 3E-144 6E-149 1287.1 69.0 660 45-770 32-764 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 5.6E-65 1.2E-69 561.6 25.5 311 74-435 55-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 1.1E-60 2.3E-65 515.0 20.9 265 59-357 1-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 5E-48 1.1E-52 419.2 22.4 242 78-360 54-308 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 4.7E-39 1E-43 333.9 12.0 215 398-630 1-227 (227)
7 PF14310 Fn3-like: Fibronectin 99.8 1.9E-20 4E-25 158.0 6.5 70 687-758 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 96.3 0.009 1.9E-07 53.1 6.3 67 668-759 18-86 (101)
9 PF10633 NPCBM_assoc: NPCBM-as 95.6 0.05 1.1E-06 46.5 7.5 70 668-755 4-74 (78)
10 PF12690 BsuPI: Intracellular 92.2 0.6 1.3E-05 40.5 7.2 32 710-753 50-81 (82)
11 COG1470 Predicted membrane pro 87.8 1.7 3.7E-05 48.9 7.8 86 669-768 284-370 (513)
12 PF14874 PapD-like: Flagellar- 86.4 5.2 0.00011 35.6 9.1 78 669-754 20-97 (102)
13 COG0486 ThdF Predicted GTPase 86.4 15 0.00032 41.9 14.4 96 247-361 60-171 (454)
14 PRK13202 ureB urease subunit b 84.8 1.8 3.9E-05 38.7 5.0 53 671-727 21-83 (104)
15 PRK13203 ureB urease subunit b 84.4 2 4.3E-05 38.4 5.0 53 671-727 20-82 (102)
16 cd00407 Urease_beta Urease bet 82.2 2.9 6.3E-05 37.3 5.2 53 671-727 20-82 (101)
17 TIGR00192 urease_beta urease, 81.3 3 6.6E-05 37.2 5.0 53 671-727 20-82 (101)
18 PRK13201 ureB urease subunit b 76.7 4.9 0.00011 37.6 5.1 53 671-727 20-82 (136)
19 PF00699 Urease_beta: Urease b 76.5 4.4 9.5E-05 36.1 4.5 54 670-727 18-81 (100)
20 PRK13205 ureB urease subunit b 76.2 4.9 0.00011 38.4 5.0 53 671-727 20-82 (162)
21 PF13473 Cupredoxin_1: Cupredo 75.8 6.1 0.00013 35.5 5.6 53 672-758 44-96 (104)
22 PRK13204 ureB urease subunit b 75.6 5.1 0.00011 38.4 5.0 53 671-727 43-105 (159)
23 COG1470 Predicted membrane pro 75.1 12 0.00026 42.4 8.5 88 668-774 396-486 (513)
24 PF06030 DUF916: Bacterial pro 74.7 11 0.00023 35.3 6.9 61 669-731 27-104 (121)
25 COG0832 UreB Urea amidohydrola 74.4 4.9 0.00011 35.7 4.2 53 670-727 19-82 (106)
26 PRK13198 ureB urease subunit b 74.0 5.9 0.00013 37.9 5.0 53 671-727 48-110 (158)
27 PF05506 DUF756: Domain of unk 69.9 21 0.00046 31.1 7.4 47 672-730 21-67 (89)
28 PRK13192 bifunctional urease s 67.4 8.9 0.00019 38.6 4.9 53 671-727 129-191 (208)
29 PF07385 DUF1498: Protein of u 65.7 9.5 0.00021 39.1 4.8 65 676-755 111-184 (225)
30 PF00345 PapD_N: Pili and flag 65.4 13 0.00027 34.5 5.3 56 672-730 17-73 (122)
31 PRK13986 urease subunit alpha; 63.8 11 0.00025 38.3 4.9 53 671-727 125-187 (225)
32 PF14796 AP3B1_C: Clathrin-ada 62.2 20 0.00042 34.6 6.0 55 669-730 85-140 (145)
33 PF00927 Transglut_C: Transglu 57.5 16 0.00034 33.0 4.4 61 668-730 14-76 (107)
34 TIGR02695 azurin azurin. Azuri 56.3 33 0.00071 32.2 6.1 54 672-730 26-99 (125)
35 PF09624 DUF2393: Protein of u 54.3 30 0.00066 33.3 6.0 63 668-730 61-133 (149)
36 PF04744 Monooxygenase_B: Mono 52.3 29 0.00064 38.3 6.0 57 668-729 262-334 (381)
37 PF06280 DUF1034: Fn3-like dom 52.0 18 0.00038 33.0 3.8 62 670-731 9-81 (112)
38 PF07610 DUF1573: Protein of u 50.8 31 0.00066 26.1 4.3 44 674-727 1-44 (45)
39 PRK09918 putative fimbrial cha 50.6 34 0.00074 35.6 6.1 49 672-729 41-93 (230)
40 PF06858 NOG1: Nucleolar GTP-b 47.4 58 0.0013 26.3 5.4 23 509-531 32-55 (58)
41 TIGR01759 MalateDH-SF1 malate 46.4 15 0.00033 40.4 2.8 59 477-539 75-135 (323)
42 PF14016 DUF4232: Protein of u 43.4 63 0.0014 30.3 6.2 59 670-730 19-82 (131)
43 COG1160 Predicted GTPases [Gen 42.1 59 0.0013 37.1 6.6 47 473-532 75-121 (444)
44 cd03708 GTPBP_III Domain III o 42.0 1.4E+02 0.003 25.6 7.7 76 670-755 5-82 (87)
45 TIGR01756 LDH_protist lactate 39.3 16 0.00035 39.9 1.7 57 477-539 56-116 (313)
46 cd00938 HisRS_RNA HisRS_RNA bi 38.7 66 0.0014 24.6 4.2 30 333-362 13-42 (45)
47 TIGR01334 modD putative molybd 36.7 3E+02 0.0065 29.6 10.7 31 177-214 105-135 (277)
48 PF05753 TRAP_beta: Translocon 36.6 1.3E+02 0.0029 30.1 7.5 83 668-758 37-127 (181)
49 PF11471 Sugarporin_N: Maltopo 36.2 56 0.0012 26.6 3.9 22 45-66 28-49 (60)
50 TIGR01451 B_ant_repeat conserv 35.0 50 0.0011 25.9 3.4 20 668-687 11-30 (53)
51 PLN02303 urease 34.5 50 0.0011 40.6 4.8 52 672-727 151-212 (837)
52 TIGR03079 CH4_NH3mon_ox_B meth 34.3 93 0.002 34.4 6.3 56 668-729 281-353 (399)
53 PRK05848 nicotinate-nucleotide 34.0 2.2E+02 0.0048 30.5 9.2 50 273-337 170-220 (273)
54 PF07172 GRP: Glycine rich pro 33.8 38 0.00082 30.3 2.8 12 1-12 1-12 (95)
55 PRK13533 7-cyano-7-deazaguanin 33.7 47 0.001 38.7 4.3 47 279-326 75-121 (487)
56 PF07233 DUF1425: Protein of u 33.2 2.2E+02 0.0047 25.2 7.6 60 668-730 23-82 (94)
57 PRK15188 fimbrial chaperone pr 32.5 86 0.0019 32.7 5.6 50 672-730 44-98 (228)
58 PF01345 DUF11: Domain of unkn 32.0 52 0.0011 27.5 3.3 20 668-687 40-59 (76)
59 PRK15211 fimbrial chaperone pr 31.9 80 0.0017 32.9 5.3 50 672-729 39-92 (229)
60 PLN00135 malate dehydrogenase 31.0 36 0.00078 37.2 2.7 59 477-539 54-114 (309)
61 cd09030 DUF1425 Putative perip 30.9 3.8E+02 0.0082 23.8 8.9 59 669-730 32-90 (101)
62 cd01338 MDH_choloroplast_like 30.8 36 0.00079 37.4 2.7 57 477-539 74-134 (322)
63 TIGR00237 xseA exodeoxyribonuc 30.6 1.6E+02 0.0036 33.7 8.0 57 471-539 174-233 (432)
64 PRK05442 malate dehydrogenase; 30.5 32 0.00068 37.9 2.1 57 477-539 76-136 (326)
65 PF06205 GT36_AF: Glycosyltran 30.4 35 0.00076 30.0 2.0 18 713-730 67-84 (90)
66 PF11906 DUF3426: Protein of u 30.1 1.7E+02 0.0038 27.8 7.1 63 668-730 67-136 (149)
67 PF00056 Ldh_1_N: lactate/mala 29.9 11 0.00025 35.9 -1.2 55 478-539 66-124 (141)
68 cd00300 LDH_like L-lactate deh 29.8 33 0.00071 37.3 2.1 58 477-539 62-121 (300)
69 TIGR01757 Malate-DH_plant mala 29.6 29 0.00063 39.1 1.7 57 477-539 116-176 (387)
70 PRK00286 xseA exodeoxyribonucl 29.0 1.7E+02 0.0036 33.6 7.8 58 470-539 179-238 (438)
71 PF06165 Glyco_transf_36: Glyc 28.9 34 0.00074 31.2 1.7 59 619-695 31-89 (110)
72 PRK15295 fimbrial assembly cha 28.7 1.1E+02 0.0024 31.9 5.6 48 672-729 36-90 (226)
73 COG4454 Uncharacterized copper 28.3 1.2E+02 0.0025 29.7 5.2 41 714-770 116-156 (158)
74 PF09851 SHOCT: Short C-termin 28.3 1.1E+02 0.0024 21.3 3.8 25 331-355 6-30 (31)
75 cd00704 MDH Malate dehydrogena 27.6 45 0.00098 36.6 2.7 57 477-539 72-132 (323)
76 COG1361 S-layer domain [Cell e 27.6 1.4E+02 0.0031 34.7 7.1 59 669-730 167-226 (500)
77 PLN00112 malate dehydrogenase 27.5 36 0.00077 39.1 1.9 57 477-539 172-232 (444)
78 PF08530 PepX_C: X-Pro dipepti 27.1 2.3E+02 0.0051 28.8 7.8 74 669-757 96-180 (218)
79 PRK15224 pili assembly chapero 26.3 1.9E+02 0.004 30.4 6.8 49 672-730 45-98 (237)
80 PF10662 PduV-EutP: Ethanolami 25.9 2.3E+02 0.0049 27.4 6.8 64 415-492 2-74 (143)
81 COG0039 Mdh Malate/lactate deh 25.7 50 0.0011 36.1 2.6 58 477-539 65-124 (313)
82 TIGR01772 MDH_euk_gproteo mala 25.3 63 0.0014 35.3 3.3 56 477-538 63-121 (312)
83 cd01857 HSR1_MMR1 HSR1/MMR1. 25.1 1.4E+02 0.0031 27.9 5.4 18 473-490 3-20 (141)
84 PRK06096 molybdenum transport 24.4 4E+02 0.0086 28.8 9.0 31 177-214 106-136 (284)
85 PF01835 A2M_N: MG2 domain; I 24.3 4.7E+02 0.01 22.7 9.7 83 668-770 14-99 (99)
86 TIGR01758 MDH_euk_cyt malate d 24.3 53 0.0012 36.1 2.5 57 477-539 71-131 (324)
87 cd01337 MDH_glyoxysomal_mitoch 24.2 53 0.0012 35.9 2.5 55 477-538 64-122 (310)
88 PF00703 Glyco_hydro_2: Glycos 24.1 2.3E+02 0.0049 24.6 6.3 64 669-739 18-81 (110)
89 PRK10081 entericidin B membran 23.9 52 0.0011 25.5 1.6 21 1-21 2-22 (48)
90 cd01336 MDH_cytoplasmic_cytoso 23.5 59 0.0013 35.8 2.7 59 477-539 74-134 (325)
91 cd06557 KPHMT-like Ketopantoat 23.5 6.8E+02 0.015 26.6 10.5 19 279-297 27-45 (254)
92 COG2003 RadC DNA repair protei 23.3 59 0.0013 33.7 2.4 52 244-296 158-210 (224)
93 PLN02602 lactate dehydrogenase 23.1 50 0.0011 36.8 2.0 58 477-539 101-160 (350)
94 cd03707 EFTU_III Domain III of 22.7 4.9E+02 0.011 22.3 8.0 67 670-745 5-78 (90)
95 TIGR01771 L-LDH-NAD L-lactate 22.6 48 0.001 36.0 1.7 56 477-539 60-119 (299)
96 PF15144 DUF4576: Domain of un 22.5 2.6E+02 0.0057 23.9 5.6 18 5-22 6-23 (88)
97 TIGR01763 MalateDH_bact malate 22.4 56 0.0012 35.6 2.2 54 479-539 67-124 (305)
98 PRK05086 malate dehydrogenase; 22.4 65 0.0014 35.2 2.7 56 477-538 65-123 (312)
99 PRK13211 N-acetylglucosamine-b 22.3 4.7E+02 0.01 30.4 9.7 77 668-771 326-405 (478)
100 cd05294 LDH-like_MDH_nadp A la 22.2 74 0.0016 34.7 3.1 58 477-539 68-127 (309)
101 PF09350 DUF1992: Domain of un 22.2 2.3E+02 0.005 23.8 5.4 42 360-409 11-53 (71)
102 COG5510 Predicted small secret 21.9 70 0.0015 24.2 1.9 21 1-21 2-22 (44)
103 PF07495 Y_Y_Y: Y_Y_Y domain; 21.5 44 0.00095 26.9 0.9 12 745-756 36-47 (66)
104 PF10087 DUF2325: Uncharacteri 21.5 1.8E+02 0.0039 25.6 4.9 40 475-529 42-81 (97)
105 PF03896 TRAP_alpha: Transloco 21.3 3.1E+02 0.0067 29.6 7.5 60 669-732 99-162 (285)
106 PRK15233 putative fimbrial cha 21.0 2.7E+02 0.0059 29.4 6.8 49 672-730 57-110 (246)
107 PRK15299 fimbrial chaperone pr 20.8 1.9E+02 0.0041 30.0 5.7 55 672-729 39-94 (227)
108 PF11611 DUF4352: Domain of un 20.0 1.1E+02 0.0024 27.8 3.4 61 669-730 36-101 (123)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=1.9e-165 Score=1462.86 Aligned_cols=731 Identities=51% Similarity=0.950 Sum_probs=638.7
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHHhhCCCCCCCCCCCCcccccccccccccccCCceecc
Q 003980 23 PQQFACDKSKSETSQFPFCNSSLTYEDRAKNLVSLLTLKEKVQQLVNTATGIPRLGVPSYEWWGEALHGVSNVGPAVRFN 102 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~ll~~MTleEKv~ql~~~~~~~~rlgip~~~~~~~~~~g~~~~g~g~~~~ 102 (782)
..+.+|++ +..+..||||++++.++|+++||++||||||++||.+.+.+++|||||.+.||+|++||++..++|+++.
T Consensus 27 ~~~~~c~~--~~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~~~~d~~hGv~~~~~g~~~~ 104 (779)
T PLN03080 27 HPQFPCKP--PTFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYEWWSESLHGLADNGPGVSFN 104 (779)
T ss_pred CCCcCCCC--ccccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccceecccccccccCCCccccc
Confidence 34567864 4456689999999999999999999999999999999899999999999999999999998888888773
Q ss_pred -CCCCCcccCchhhHHHhcCCHHHHHHHHHHHHHHHHhhhccCCCCceeecccccccCCCCCCcccCCCCCChHHHHHHH
Q 003980 103 -AMVPGATSFPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGLTYWSPNVNVFRDPRWGRGQETPGEDPLVVSKYA 181 (782)
Q Consensus 103 -~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~~~~Gi~~~aP~~dv~r~p~~gR~~esfgeDP~l~~~~a 181 (782)
+.+.++|.||++|++|||||++|++++|+++|+|+|+++|.+..|+++|+|++||.|||||||++|||||||+|+++|+
T Consensus 105 ~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a 184 (779)
T PLN03080 105 SGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYS 184 (779)
T ss_pred cCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHH
Confidence 3455789999999999999999999999999999999976655577889999999999999999999999999999999
Q ss_pred HHHHHHHhhccCC---CCCCCCCceeeeeeccccccccCCCCCCcccccccccCHHHHHhhcCHHHHHHHHcCCcceEEe
Q 003980 182 VNYVRGLQEIGDS---KNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMC 258 (782)
Q Consensus 182 ~a~v~GlQ~~~~g---~~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~ai~~g~~~~vM~ 258 (782)
.|||+|||+.+.. ...+.++.+|+||+||||||+++.+.+..|...++.+++++|+|+||+||++||++|.+++|||
T Consensus 185 ~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~ 264 (779)
T PLN03080 185 VEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMC 264 (779)
T ss_pred HHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEe
Confidence 9999999984100 0001134569999999999999877777888889999999999999999999999998889999
Q ss_pred eccccCCccccCCHHHHHHHhhhhcCcCcEEEcCchhhhhhhccccccCChHHHHHHHHHcCCCccCCcchhHHHHHHHH
Q 003980 259 SYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLNMNCGDYLGKYTENAVN 338 (782)
Q Consensus 259 sy~~vng~pa~~s~~ll~~iLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~~~~~l~~av~ 338 (782)
|||++||+|||.|++||++ ||+||||+|+|||||++|..+...|++..+.+|++++||+||+||+|..++.+.|.+||+
T Consensus 265 sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~ 343 (779)
T PLN03080 265 SYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIE 343 (779)
T ss_pred CCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHH
Confidence 9999999999999999986 999999999999999999999988888888999999999999999998877789999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhhceEeccCC-CCCCCCCCCCCcE
Q 003980 339 MSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCTDDHKSLALDAARQGIVLLGNN-GALPLSSNATQNL 417 (782)
Q Consensus 339 ~G~i~~~~ld~av~RiL~~k~~~Glf~~~p~~~~~~~~~~~~~~~~~h~~la~~~A~esiVLLKN~-~~LPL~~~~~~kI 417 (782)
+|+|++++||+||+|||++|+++|+|+.+|...+|.+.....+.+++|+++|+++|+||||||||+ ++|||++.+.+||
T Consensus 344 ~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~I 423 (779)
T PLN03080 344 KGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSL 423 (779)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEE
Confidence 999999999999999999999999999544333455444567889999999999999999999999 8999987656799
Q ss_pred EEEccCCCcccccccCCCcCCCCcCCHHHHHhhcccceeecCCCCCCccCCCcchHHHHHHhhcCCeEEEEEccCCcccc
Q 003980 418 AVIGPNANATNVMISNYAGIPCGYTSPLQGLQKYVSAVTYAPGCSNVKCKDDSLIEPAAKAAAAADVVVVVVGLDQSIEA 497 (782)
Q Consensus 418 aviG~~a~~~~~~~G~~~g~~~~~~t~l~gl~~~~~~v~y~~G~~~~~~~~~~~~~~a~~~a~~aD~vIv~vG~~~~~~~ 497 (782)
+||||+++....++|+|++.+++.+|++++|+++...+.|..||....+.+...+++|+++|++||+|||++|.+...++
T Consensus 424 aViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~ 503 (779)
T PLN03080 424 AIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQET 503 (779)
T ss_pred EEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccc
Confidence 99999999988778889998899999999999987667899998655544556789999999999999999999988999
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEecCCeeeeccccccCCccEEEEccCCCchhHHHHHHHHhcCCCCccc
Q 003980 498 EGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGR 577 (782)
Q Consensus 498 Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~~G~e~g~AiAdVL~G~~nPsGk 577 (782)
|+.||.+|.||+.|.+||++|++++++|||||+++|+|++|+|+.+.++++|||++|||||++|+||||||||++|||||
T Consensus 504 E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGk 583 (779)
T PLN03080 504 EDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGR 583 (779)
T ss_pred cCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCc
Confidence 99999999999999999999998777799999999999999998766789999999999999999999999999999999
Q ss_pred cCcccCCCcccCCCCCcCCccccccCCCCCCCccccCCCCCccccCCCCCccCcccccccCCccceeeccc-CcccCCcc
Q 003980 578 SPFTWYPQQYVDQLPMTDMNMRANATANLPGRTYRFYSGKTVYPFGHGLSYSSFSKFIVSAPSTVLIKKNR-NSIHSSHA 656 (782)
Q Consensus 578 LPvT~~p~~~~~~~p~~~~~~~~~~~~~~~~~~Yr~~~~~~~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~-~~~~~~~~ 656 (782)
||+||||+++ .|+|++|+++++++..+||+++||||+.+|+||||||||||||+||+++++..+.++... ........
T Consensus 584 LPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~ 662 (779)
T PLN03080 584 LPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSISRKP 662 (779)
T ss_pred Ceeeeccccc-ccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEecccccccccccccccccccccccc
Confidence 9999989887 579999888877666678999999999999999999999999999998754321111000 00000000
Q ss_pred -----c---cccccc-ccCCCceEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEE
Q 003980 657 -----Q---AIDVTT-VNCKDLHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVG 727 (782)
Q Consensus 657 -----~---~~~~~~-~~~~~~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~ 727 (782)
. ...... ..|+...++|+|+|||||+++|+||||||+++|.++ +.+|.|||+||+||+|+||||++|+|+
T Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlYv~~p~~~-~~~P~k~L~gF~kv~L~~Ges~~V~~~ 741 (779)
T PLN03080 663 LLQRRDELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVV-PGVPEKQLVGFDRVHTASGRSTETEIV 741 (779)
T ss_pred ccccccccccccccccccCCCceEEEEEEEEECCcccCcEEEEEEEecCccC-CCCcchhccCcEeEeeCCCCEEEEEEE
Confidence 0 000000 112212699999999999999999999999999887 789999999999999999999999999
Q ss_pred eccCCCceEEeCCCCEEEeCeEEEEEEeCCC
Q 003980 728 FDVCQGLNLVDTDGQRKLVIGLHTLIVGSPS 758 (782)
Q Consensus 728 l~~~~~ls~~d~~~~~~~e~G~y~i~vG~ss 758 (782)
|+++++|++||.+++|++|+|+|+|+||.++
T Consensus 742 l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~ 772 (779)
T PLN03080 742 VDPCKHLSVANEEGKRVLPLGDHVLMLGDLE 772 (779)
T ss_pred eCchHHceEEcCCCcEEEeCccEEEEEeCCc
Confidence 9965789999999999999999999999665
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=2.8e-144 Score=1287.10 Aligned_cols=660 Identities=31% Similarity=0.505 Sum_probs=563.1
Q ss_pred CCHHHHHHHHHhcCCHHHHHHHhhCCCC--------------------------------------CCCCCCCCcccccc
Q 003980 45 LTYEDRAKNLVSLLTLKEKVQQLVNTAT--------------------------------------GIPRLGVPSYEWWG 86 (782)
Q Consensus 45 ~~~~~r~~~ll~~MTleEKv~ql~~~~~--------------------------------------~~~rlgip~~~~~~ 86 (782)
.+.++|+++|+++||||||+|||++... ..+|+|||.+ +..
T Consensus 32 ~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n~~~~~~~~~lq~~~~~~~~~giP~l-i~~ 110 (765)
T PRK15098 32 EARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFNTVTRQDIRAMQDQVMQLSRLKIPLF-FAY 110 (765)
T ss_pred cCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEcCcCHHHHHHHHHHHhhCCCCCCCee-EEE
Confidence 4689999999999999999999986310 0367899988 677
Q ss_pred cccccccccCCceeccCCCCCcccCchhhHHHhcCCHHHHHHHHHHHHHHHHhhhccCCCCcee-ecccccccCCCCCCc
Q 003980 87 EALHGVSNVGPAVRFNAMVPGATSFPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGLTY-WSPNVNVFRDPRWGR 165 (782)
Q Consensus 87 ~~~~g~~~~g~g~~~~~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~~~~Gi~~-~aP~~dv~r~p~~gR 165 (782)
|++||. .|.||+++++|||||++|++++|+++|+|+|++ |+|+ |+|++||.|||+|||
T Consensus 111 D~e~G~---------------~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~------Gin~~laPv~Dv~r~p~~gr 169 (765)
T PRK15098 111 DVVHGQ---------------RTVFPISLGLASSWDLDAVATVGRVSAYEAADD------GLNMTWAPMVDISRDPRWGR 169 (765)
T ss_pred eCCCCc---------------cccCChHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCCEEeeCcccccCCCCccc
Confidence 888874 588999999999999999999999999999999 9998 999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCCCceeeeeeccccccccCCCCCCcccccccccCHHHHHhhcCHHHH
Q 003980 166 GQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFK 245 (782)
Q Consensus 166 ~~esfgeDP~l~~~~a~a~v~GlQ~~~~g~~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~ 245 (782)
++|||||||+++++|+.|+|+|||+.+. ....+|++|+|||||||..+ .+|...++.+++++|+|+||+||+
T Consensus 170 ~~rsfgeDP~lv~~~~~a~v~GlQ~~~~-----~~~~gV~a~~KHFpG~g~~~---~~~~~~~~~~~~~~l~e~~l~PF~ 241 (765)
T PRK15098 170 ASEGFGEDTYLTSIMGKTMVKAMQGKSP-----ADRYSVMTSVKHFALYGAVE---GGRDYNTVDMSPQRMFNDYLPPYK 241 (765)
T ss_pred cccCcCCCHHHHHHHHHHHHHHHcCCCC-----CCCCCEEEECcEEeCCCCcc---cCccCccCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998511 01224999999999999532 234445667899999999999999
Q ss_pred HHHHcCCcceEEeeccccCCccccCCHHHHHHHhhhhcCcCcEEEcCchhhhhhhccccccCChHHHHHHHHHcCCCccC
Q 003980 246 SCVQEGHVSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLNMNC 325 (782)
Q Consensus 246 ~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~iLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~ 325 (782)
++|++| +++||||||.+||+|||.|+++|++|||+||||+|+|||||++|..+.. |++..+.+|++++||+||+||+|
T Consensus 242 ~ai~ag-~~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ea~~~Al~AG~Dl~m 319 (765)
T PRK15098 242 AGLDAG-SGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPEDAVRLALKSGIDMSM 319 (765)
T ss_pred HHHHhC-CCEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHHHHHHHHHHcCCCccc
Confidence 999988 5799999999999999999999999999999999999999999998874 77777889999999999999999
Q ss_pred Ccc-hhHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-CC--CCCCCCCcHHHHHHHHHHHhhceEec
Q 003980 326 GDY-LGKYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPL-GN--LGPSDVCTDDHKSLALDAARQGIVLL 401 (782)
Q Consensus 326 ~~~-~~~~l~~av~~G~i~~~~ld~av~RiL~~k~~~Glf~~~p~~~~~-~~--~~~~~~~~~~h~~la~~~A~esiVLL 401 (782)
... +.+.|.+||++|+|++++||+||+|||++|+++|+|+ +|+...- .. .....+.+++|+++++++|++|||||
T Consensus 320 ~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLL 398 (765)
T PRK15098 320 SDEYYSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-DPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLL 398 (765)
T ss_pred CchhHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-CCccccccccccccccccCCHHHHHHHHHHHHhcEEEE
Confidence 754 3467999999999999999999999999999999998 4421100 00 01122457899999999999999999
Q ss_pred cCC-CCCCCCCCCCCcEEEEccCCCcccccccCCC--cCCCCcCCHHHHHhhccc---ceeecCCCCCCcc---------
Q 003980 402 GNN-GALPLSSNATQNLAVIGPNANATNVMISNYA--GIPCGYTSPLQGLQKYVS---AVTYAPGCSNVKC--------- 466 (782)
Q Consensus 402 KN~-~~LPL~~~~~~kIaviG~~a~~~~~~~G~~~--g~~~~~~t~l~gl~~~~~---~v~y~~G~~~~~~--------- 466 (782)
||+ ++|||++. +||+||||+++.....+|+|+ +.+.+.+|+++||++... .+.|..||.....
T Consensus 399 KN~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~~~~ 476 (765)
T PRK15098 399 KNRLETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQ 476 (765)
T ss_pred ecCCCCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecccccccCcccchhhhc
Confidence 999 89999854 699999999988765667765 567788999999998753 5789998842111
Q ss_pred ----------CCCcchHHHHHHhhcCCeEEEEEccCCcccccCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEecCCee
Q 003980 467 ----------KDDSLIEPAAKAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPV 536 (782)
Q Consensus 467 ----------~~~~~~~~a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvVvVl~~g~P~ 536 (782)
.....+++|+++|+++|+|||++|.+...++|+.||.+|.||+.|.+||++|++. ++|||||+++|+|+
T Consensus 477 ~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~-~~~vVvVl~~g~P~ 555 (765)
T PRK15098 477 YEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT-GKPLVLVLMNGRPL 555 (765)
T ss_pred cccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHh-CcCEEEEEeCCcee
Confidence 1124578899999999999999999888899999999999999999999999864 68999999999999
Q ss_pred eeccccccCCccEEEEccCCCchhHHHHHHHHhcCCCCccccCcccCCCcccCCCCCcCCcccc---ccCCCCCCCcccc
Q 003980 537 DISFAKSNRKIGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQYVDQLPMTDMNMRA---NATANLPGRTYRF 613 (782)
Q Consensus 537 ~l~~~~~~~~v~Ail~a~~~G~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~---~~~~~~~~~~Yr~ 613 (782)
+|+|+. ++++|||++|+||+++|+|+||||||++|||||||+|| |++. .|+|.++..... +.+..+.+.+|||
T Consensus 556 ~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~-~~~P~~~~~~~~~~~y~e~~~~~y~yry 631 (765)
T PRK15098 556 ALVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSV-GQIPVYYNHLNTGRPYNPDKPNKYTSRY 631 (765)
T ss_pred eccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCC-CcCccccccCCCCCccccCcccccccce
Confidence 999874 48999999999999999999999999999999999997 6665 678976543211 1111112235899
Q ss_pred CCC--CCccccCCCCCccCcccccccCCccceeecccCcccCCcccccccccccCCCceEEEEEEEEeCCCCCcceEEEE
Q 003980 614 YSG--KTVYPFGHGLSYSSFSKFIVSAPSTVLIKKNRNSIHSSHAQAIDVTTVNCKDLHFHVVIGVKNNGPMSGSHVVLI 691 (782)
Q Consensus 614 ~~~--~~~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~eVvQl 691 (782)
|+. +|+||||||||||+|+||++++.+.. . ..++.++|+|+|||||+++|+|||||
T Consensus 632 ~d~~~~plypFG~GLSYT~F~ys~l~v~~~~---~-------------------~~~~~i~v~v~V~NtG~~~G~EVvQl 689 (765)
T PRK15098 632 FDEANGPLYPFGYGLSYTTFTVSDVKLSSPT---M-------------------KRDGKVTASVTVTNTGKREGATVVQL 689 (765)
T ss_pred eccCCCccccccCCCCCccEEeeccEecccc---c-------------------cCCCeEEEEEEEEECCCCCccEEEEE
Confidence 986 49999999999999999999853210 0 01357999999999999999999999
Q ss_pred EEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEEeccCCCceEEeCCCCEEEeCeEEEEEEeCCCcccceeEEEEEE
Q 003980 692 FWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLVIGLHTLIVGSPSERQVRHHLNVRL 770 (782)
Q Consensus 692 Y~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~y~i~vG~ss~~~~~~~~~~~~ 770 (782)
|+++|.++ +.+|.|||+||+||.|+|||+++|+|+|+. ++|++||.+++|++|+|+|+|+||.||+ |++ +.++++
T Consensus 690 Yv~~~~~~-~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~v~vG~ss~-d~~-~~~~~~ 764 (765)
T PRK15098 690 YLQDVTAS-MSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMKYVAEPGKFNVFIGLDSA-RVK-QGSFEL 764 (765)
T ss_pred eccCCCCC-CCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCcEEEeCceEEEEEECCCC-ccc-ceEEEE
Confidence 99999988 899999999999999999999999999998 8999999999999999999999999996 665 456665
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-65 Score=561.64 Aligned_cols=311 Identities=32% Similarity=0.554 Sum_probs=268.6
Q ss_pred CCCCCCCcccccccccccccccCCceeccCCCCCcccCchhhHHHhcCCHHHHHHHHHHHHHHHHhhhccCCCCcee-ec
Q 003980 74 IPRLGVPSYEWWGEALHGVSNVGPAVRFNAMVPGATSFPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGLTY-WS 152 (782)
Q Consensus 74 ~~rlgip~~~~~~~~~~g~~~~g~g~~~~~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~~~~Gi~~-~a 152 (782)
.+|++||.+ +..|..+|..+ +++ .++|.||+++++|||||+++++++|+++|+|+|++ |||+ |+
T Consensus 55 ~~r~~ipll-i~~D~egG~v~-----r~~---~~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~------Gin~~fA 119 (397)
T COG1472 55 EARLGIPLL-IAIDQEGGRVQ-----RLR---EGFTVFPAALALAATWDPELARKVGRVIAKELRAL------GINLDFA 119 (397)
T ss_pred hhccCCCeE-EEEecCCCeee-----ecc---CCCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHc------CCCcccc
Confidence 358999998 57788888643 121 15899999999999999999999999999999999 9998 99
Q ss_pred ccccccCCCCCCcccCC-CCCChHHHHHHHHHHHHHHhhccCCCCCCCCCceeeeeeccccccccCCCCCCccccccccc
Q 003980 153 PNVNVFRDPRWGRGQET-PGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKV 231 (782)
Q Consensus 153 P~~dv~r~p~~gR~~es-fgeDP~l~~~~a~a~v~GlQ~~~~g~~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~~ 231 (782)
||+||.|||+|||.+|+ |||||++++.|+.|||+|||+. | |++|+|||||||..+ .+++..+..+
T Consensus 120 PvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~--g---------v~at~KHFpGhG~~~---~dsh~~~~~v 185 (397)
T COG1472 120 PVLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQGA--G---------VAATIKHFPGHGAVE---GDSHYGLLPI 185 (397)
T ss_pred ceeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhhC--C---------ceeeeccccCCCCCc---CCcccccCCC
Confidence 99999999999998888 9999999999999999999997 8 999999999998543 2333323678
Q ss_pred CHHHHHhhcCHHHHHHHHcCC--cceEEeeccccCCccccCCHHHHHHHhhhhcCcCcEEEcCchhhhhhhccccccCCh
Q 003980 232 TKQDLEDTYQPPFKSCVQEGH--VSSVMCSYNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATP 309 (782)
Q Consensus 232 ~~~~l~e~~l~PF~~ai~~g~--~~~vM~sy~~vng~pa~~s~~ll~~iLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~ 309 (782)
+++.|+|.|++||+.+++.+. ++++|++||.|||.|||.|+++|++|||++|||+|+|||||++|.++...| .+.
T Consensus 186 ~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~---g~~ 262 (397)
T COG1472 186 DPRALRELYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAH---GSA 262 (397)
T ss_pred ChHHHHHhhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhc---cCH
Confidence 999999999999999999996 789999999999999999999999999999999999999999999877643 345
Q ss_pred HHHHHHHHHcCCCccCCcc-hh-HHHHHHHHCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcHHHH
Q 003980 310 EDAVALALNAGLNMNCGDY-LG-KYTENAVNMSKVKESVVDQALIYNYIVLMRLGFFDGDPKSQPLGNLGPSDVCTDDHK 387 (782)
Q Consensus 310 ~ea~~~al~AG~D~~~~~~-~~-~~l~~av~~G~i~~~~ld~av~RiL~~k~~~Glf~~~p~~~~~~~~~~~~~~~~~h~ 387 (782)
.+++.++++||+||+|... .. ..+..+...+ ++++++|++++|||++|+++|+|+ +|+ .. +|+
T Consensus 263 ~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~~~----~~---------~~~ 327 (397)
T COG1472 263 ADRAEAALKAGVDIVLVCNELYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFE-NPY----SS---------EHR 327 (397)
T ss_pred HHHHHHHHhcCCCEEecCCchhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-CCC----ch---------hhH
Confidence 6777789999999998633 32 3344444445 999999999999999999999999 542 21 899
Q ss_pred HHHHHHHhhceEeccCC-CCCCCCCCCCCcEEEEccCCCcccccccCCC
Q 003980 388 SLALDAARQGIVLLGNN-GALPLSSNATQNLAVIGPNANATNVMISNYA 435 (782)
Q Consensus 388 ~la~~~A~esiVLLKN~-~~LPL~~~~~~kIaviG~~a~~~~~~~G~~~ 435 (782)
+++++++++|+|||||+ .+|||+ .+.++|+|+||+++.. . |+|+
T Consensus 328 ~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 328 ALAREAARESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred HHHHHHHHHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence 99999999999999999 899999 4457999999999987 4 5555
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=1.1e-60 Score=514.97 Aligned_cols=265 Identities=30% Similarity=0.511 Sum_probs=214.6
Q ss_pred CHHHHHHHhhCC----------------------------CCCCCCCCCCcccccccccccccccCCceeccCCCCCccc
Q 003980 59 TLKEKVQQLVNT----------------------------ATGIPRLGVPSYEWWGEALHGVSNVGPAVRFNAMVPGATS 110 (782)
Q Consensus 59 TleEKv~ql~~~----------------------------~~~~~rlgip~~~~~~~~~~g~~~~g~g~~~~~~~~~~t~ 110 (782)
|||||||||++. ....+++|||.+ +..|.+||+... .+ .+.|.
T Consensus 1 TleeKigQl~~~~~~~i~~~~vGgv~~~~~~~~~~~~~~~~~~~~~~~iP~~-i~~D~egG~~~~-----~~---~~~t~ 71 (299)
T PF00933_consen 1 TLEEKIGQLFMELKELIKEYHVGGVILPEQLKQLTQSLQAISEQSRLGIPLL-IAIDQEGGIVQR-----LG---GGFTA 71 (299)
T ss_dssp -HHHHHHHTEEHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHCCGCGTCT-E-EEEEETTSTTTS-----TT---TTS--
T ss_pred CHHHHHHHHHHHHHHHHhcCCccEEEcHHHHHHHHHHHHHHhhccccCCCeE-EEEcCCCceEec-----CC---CcCcc
Confidence 899999999831 124679999998 678999987532 11 12699
Q ss_pred CchhhHHHhcCCHHHHHHHHHHHHHHHHhhhccCCCCcee-ecccccccCCCCCCcccCCCCCChHHHHHHHHHHHHHHh
Q 003980 111 FPAVILSAASFNASLWLKMGQVVSTEARAMYNVGQAGLTY-WSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQ 189 (782)
Q Consensus 111 fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~~~~Gi~~-~aP~~dv~r~p~~gR~~esfgeDP~l~~~~a~a~v~GlQ 189 (782)
||+++++|||||+++++++|..+|+|++++ |||+ |||++||.|+|+|||++|+|||||+++++|+.|||+|+|
T Consensus 72 ~P~~~~l~at~d~~~a~~~g~~~a~el~~~------Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~q 145 (299)
T PF00933_consen 72 FPSPMALAATWDPELAYEVGRIIARELRAL------GINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGLQ 145 (299)
T ss_dssp -S-HHHHHHHTCHHHHHHHHHHHHHHHHHT------T-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHHHh------hhccccccceeeeeeccccccccccchhHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999 9998 999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCceeeeeeccccccc-cCCCCCCcccccccccCHHHHHhhcCHHHHHHHHcCCcceEEeeccccCCccc
Q 003980 190 EIGDSKNSSSDRLKVSSCCKHYTAYD-VDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVQEGHVSSVMCSYNRVNGIPT 268 (782)
Q Consensus 190 ~~~~g~~~~~~~~~v~a~~KHF~g~g-~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~ai~~g~~~~vM~sy~~vng~pa 268 (782)
+. | |++|+||||||+ +++|. ......+++++|+|.||+||+.+|+++.+.+||+||+.+|++|+
T Consensus 146 ~~--g---------v~~~~KHFpG~~~~d~~~----~~~~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~pa 210 (299)
T PF00933_consen 146 GA--G---------VAATAKHFPGHGAQDSHR----DLPSVDVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGTPA 210 (299)
T ss_dssp CT--T---------SEEEEEEETTGGCSCTTT----TTEEEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTEEG
T ss_pred cc--c---------cccccccccccccccccc----ccceecCCcccccchhcccchhcccccccceeeeeccccCCccc
Confidence 98 8 999999999973 44443 33345689999999999999999944446799999999999999
Q ss_pred cCCHHHHHHHhhhhcCcCcEEEcCchhhhhhhccccccCChHHHHHHHHHcCCCccCCcch----hHHHHHHHHCCCCcH
Q 003980 269 CADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLNMNCGDYL----GKYTENAVNMSKVKE 344 (782)
Q Consensus 269 ~~s~~ll~~iLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~~----~~~l~~av~~G~i~~ 344 (782)
|+|+++|+++||+||||+|+|||||++|+++...+ +..+++++||+||+||+|.... .+.|.++|++|.+++
T Consensus 211 s~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~----~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~ 286 (299)
T PF00933_consen 211 SLSPKILTDLLRNELGFDGVVISDDLEMGALSSNY----SIEEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRISE 286 (299)
T ss_dssp GG-HHHHCCCCCCCS---SEEEESTTTSHHHHCCT----THHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSGH
T ss_pred hhhhccchhhCcCcccCCCeEecccchHHHHHhcc----ccchHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCCH
Confidence 99999999999999999999999999999987633 3779999999999999987432 488999999999999
Q ss_pred HHHHHHHHHHHHH
Q 003980 345 SVVDQALIYNYIV 357 (782)
Q Consensus 345 ~~ld~av~RiL~~ 357 (782)
+|||+||+|||++
T Consensus 287 ~~ld~av~RIl~~ 299 (299)
T PF00933_consen 287 ERLDEAVRRILRL 299 (299)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=5e-48 Score=419.20 Aligned_cols=242 Identities=20% Similarity=0.233 Sum_probs=201.9
Q ss_pred CCCcccccccccccccccCCceeccCCCCCcccCchhhHHHhcCC------HHHHHHHHHHHHHHHHhhhccCCCCcee-
Q 003980 78 GVPSYEWWGEALHGVSNVGPAVRFNAMVPGATSFPAVILSAASFN------ASLWLKMGQVVSTEARAMYNVGQAGLTY- 150 (782)
Q Consensus 78 gip~~~~~~~~~~g~~~~g~g~~~~~~~~~~t~fP~~~~laat~d------~~l~~~~g~~~g~E~ra~~~~~~~Gi~~- 150 (782)
++|.+ +..|.++|..+ ++ ..+.|.||+++++||||| ++|++++|.++|+|+|++ |||+
T Consensus 54 ~~pll-i~iD~EgG~v~-----rl---~~~~t~~P~~~~laat~d~~~~~~~~la~~~g~~~a~Elra~------Gin~~ 118 (337)
T PRK05337 54 RPPLL-IAVDQEGGRVQ-----RF---REGFTRLPAMQSFGALWDRDPLEALKLAEEAGWLMAAELRAC------GIDLS 118 (337)
T ss_pred CCCCE-EEEecCCCEee-----ec---CCCCCCCCCHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHh------CCCcc
Confidence 57887 67788777531 12 235799999999999999 999999999999999999 9998
Q ss_pred ecccccccCCCCCCcccCCCCCChHHHHHHHHHHHHHHhhccCCCCCCCCCceeeeeeccccccccCCCCCCcccccccc
Q 003980 151 WSPNVNVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAYDVDNWKGVDRFHFDAK 230 (782)
Q Consensus 151 ~aP~~dv~r~p~~gR~~esfgeDP~l~~~~a~a~v~GlQ~~~~g~~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~ 230 (782)
|+|++||.++++| |+.|+|||||+++++|+.||++|||+. | |++|+|||||||.+..+.+.... ...
T Consensus 119 ~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~~--g---------v~~~~KHFpG~G~~~~dsh~~~~-~~~ 185 (337)
T PRK05337 119 FAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHAA--G---------MAATGKHFPGHGAVEADSHVETP-VDE 185 (337)
T ss_pred ccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHHC--C---------CEEEecccCCCCCCcCCCCCCCC-CCC
Confidence 9999999965544 678999999999999999999999997 8 99999999999965432222111 122
Q ss_pred cCHHHHHhhcCHHHHHHHHcCCcceEEee---ccccCCccccCCHHHHHHHhhhhcCcCcEEEcCchhhhhhhccccccC
Q 003980 231 VTKQDLEDTYQPPFKSCVQEGHVSSVMCS---YNRVNGIPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTA 307 (782)
Q Consensus 231 ~~~~~l~e~~l~PF~~ai~~g~~~~vM~s---y~~vng~pa~~s~~ll~~iLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~ 307 (782)
.+.++|++.||+||+.+|++| +.+|||| |+.+|+.|||+|+++|++|||+||||+|+|||||++|.++. ...
T Consensus 186 ~~~~el~~~~l~PF~~ai~~g-~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~----~~~ 260 (337)
T PRK05337 186 RPLEEIRAEDMAPFRALIAAG-LDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAA----VAG 260 (337)
T ss_pred CCHHHHHhhhHHHHHHHHhcC-CCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhh----hcC
Confidence 466799999999999999998 6799999 99999999999999999999999999999999999998653 245
Q ss_pred ChHHHHHHHHHcCCCccCCcc---hhHHHHHHHHCCCCcHHHHHHHHHHHHHHHHH
Q 003980 308 TPEDAVALALNAGLNMNCGDY---LGKYTENAVNMSKVKESVVDQALIYNYIVLMR 360 (782)
Q Consensus 308 ~~~ea~~~al~AG~D~~~~~~---~~~~l~~av~~G~i~~~~ld~av~RiL~~k~~ 360 (782)
+.++++++||+||+||+|... ....+.+++.+ +.+.+|+++++.+
T Consensus 261 ~~~~~~~~al~AG~Dl~l~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~ 308 (337)
T PRK05337 261 DYAERAQAALDAGCDMVLVCNNRDGAVSVLDNLSP--------PISAERLTRLYGR 308 (337)
T ss_pred CHHHHHHHHHHcCCCEEeeCCCHHHHHHHHHHHHh--------hccHHHHHHHhcc
Confidence 788999999999999987643 33456666654 7788999988866
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=4.7e-39 Score=333.91 Aligned_cols=215 Identities=40% Similarity=0.624 Sum_probs=153.2
Q ss_pred eEeccCC-CCCCCCCCCCCcEEEEccCCCcccccccCCC-cCCCCcCCHHHHHhhccc--ceeecCCCCCCccCCCcchH
Q 003980 398 IVLLGNN-GALPLSSNATQNLAVIGPNANATNVMISNYA-GIPCGYTSPLQGLQKYVS--AVTYAPGCSNVKCKDDSLIE 473 (782)
Q Consensus 398 iVLLKN~-~~LPL~~~~~~kIaviG~~a~~~~~~~G~~~-g~~~~~~t~l~gl~~~~~--~v~y~~G~~~~~~~~~~~~~ 473 (782)
||||||+ ++|||++.+. ||+|+|+.+.....++|++. ..+.+..+++++|+++.. .+.+..++. ...+...+.
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGD--AVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCC--CCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeecc--ccccccchH
Confidence 7999999 7999998642 99999999998665555543 356677899999998875 222222211 112456788
Q ss_pred HHHHHhhcCCeEEEEEccCCcccccC--------CCCCCCCCChhHHHHHHHHHHhcCCcEEEEEecCCeeeeccccccC
Q 003980 474 PAAKAAAAADVVVVVVGLDQSIEAEG--------LDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDISFAKSNR 545 (782)
Q Consensus 474 ~a~~~a~~aD~vIv~vG~~~~~~~Eg--------~Dr~~l~Lp~~q~~Li~~va~~~~~pvVvVl~~g~P~~l~~~~~~~ 545 (782)
++++.++++|+|||++|.. ++|+ .||.++.||..|.+||+++++.+ +|+|||+++++||++.++. +
T Consensus 78 ~~~~~~~~aD~vIv~~~~~---~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~ 151 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGRP---SGEGNDNNTEGESDRSDLALPANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--D 151 (227)
T ss_dssp HHHHHHHCSSEEEEEEETT---SBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--H
T ss_pred HHHHHhhcCCEEEEecccc---ccccccccccccCCcccccchhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--h
Confidence 9999999999999999922 2333 59999999999999999998764 6789999999999997775 4
Q ss_pred CccEEEEccCCCchhHHHHHHHHhcCCCCccccCcccCCCcccCCCCCcCCccccccCCCCCCCccccCCCCCccccCCC
Q 003980 546 KIGGILWVGYPGQAGGDAIAQIIFGDYNPAGRSPFTWYPQQYVDQLPMTDMNMRANATANLPGRTYRFYSGKTVYPFGHG 625 (782)
Q Consensus 546 ~v~Ail~a~~~G~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~~~~~Yr~~~~~~~ypFG~G 625 (782)
+++|||++|++|+++++|+||||||++|||||||+|| |++. .++|.++... ..++.|+|....++||||||
T Consensus 152 ~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~-~~~p~~~~~~-------~~~~~~~~~~~~~~~~fG~G 222 (227)
T PF01915_consen 152 NVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSM-EDIPAYYNYG-------MYGRTYDYDSGPPLYPFGYG 222 (227)
T ss_dssp C-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSG-GGTTTTTTTS--------THCCHHHHTTSESB-TT--
T ss_pred hhceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCCh-hhCCCccccc-------ccCcccccCCCCccCcCCCC
Confidence 8999999999999999999999999999999999998 5554 5678543221 12345777778899999999
Q ss_pred CCccC
Q 003980 626 LSYSS 630 (782)
Q Consensus 626 LSYTt 630 (782)
||||+
T Consensus 223 Lsyt~ 227 (227)
T PF01915_consen 223 LSYTY 227 (227)
T ss_dssp B-TT-
T ss_pred CEeeC
Confidence 99996
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.81 E-value=1.9e-20 Score=158.00 Aligned_cols=70 Identities=36% Similarity=0.535 Sum_probs=60.9
Q ss_pred eEEEEEEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEEeccCCCceEEeCC-CCEEEeCeEEEEEEeCCC
Q 003980 687 HVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDTD-GQRKLVIGLHTLIVGSPS 758 (782)
Q Consensus 687 eVvQlY~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~-~~~~~e~G~y~i~vG~ss 758 (782)
||||||+++|.++ +.+|.|+|+||+||.|+|||+++|+|+|++ ++|++||.+ ++|++++|+|+|+||.||
T Consensus 1 EVvqlY~~~~~~~-~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSS-VQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSS-S---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCC-CCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999998 899999999999999999999999999999 899999998 689999999999999887
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.32 E-value=0.009 Score=53.11 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=47.3
Q ss_pred CceEEEEEEEEeCCCCC-cceEEEEEEeCCCCCCCCCcchhhhccccc-ccCCCCEEEEEEEeccCCCceEEeCCCCEEE
Q 003980 668 DLHFHVVIGVKNNGPMS-GSHVVLIFWKPPSASTAGAPNVELVGFERV-DVQKGKTKNVTVGFDVCQGLNLVDTDGQRKL 745 (782)
Q Consensus 668 ~~~~~v~v~VtNtG~~~-G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~ 745 (782)
++.++++++|+|.|... +.-.|++|+..... +-..| .|+|||+++++|++.. .
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~-----------~~~~i~~L~~g~~~~v~~~~~~-~------------- 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSV-----------STVTIPSLAPGESETVTFTWTP-P------------- 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE-----------EEEEESEB-TTEEEEEEEEEE--S-------------
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCcee-----------ccEEECCcCCCcEEEEEEEEEe-C-------------
Confidence 46899999999999874 66688888765322 34455 6999999999999998 3
Q ss_pred eCeEEEEEEeCCCc
Q 003980 746 VIGLHTLIVGSPSE 759 (782)
Q Consensus 746 e~G~y~i~vG~ss~ 759 (782)
.+|.|.|.+=-+..
T Consensus 73 ~~G~~~i~~~iD~~ 86 (101)
T PF07705_consen 73 SPGSYTIRVVIDPD 86 (101)
T ss_dssp S-CEEEEEEEESTT
T ss_pred CCCeEEEEEEEeeC
Confidence 57888887765543
No 9
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.63 E-value=0.05 Score=46.54 Aligned_cols=70 Identities=21% Similarity=0.204 Sum_probs=38.5
Q ss_pred CceEEEEEEEEeCCCCCcceEEEEEEeCCCCCCC-CCcchhhhcccccccCCCCEEEEEEEeccCCCceEEeCCCCEEEe
Q 003980 668 DLHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTA-GAPNVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLV 746 (782)
Q Consensus 668 ~~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~-~~p~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e 746 (782)
++.++++++|+|.|..+-. -+.+=+..|..=.+ ..|. .-..|+|||+++++|.|....+ .+
T Consensus 4 G~~~~~~~tv~N~g~~~~~-~v~~~l~~P~GW~~~~~~~------~~~~l~pG~s~~~~~~V~vp~~-----------a~ 65 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLT-NVSLSLSLPEGWTVSASPA------SVPSLPPGESVTVTFTVTVPAD-----------AA 65 (78)
T ss_dssp TEEEEEEEEEE--SSS-BS-S-EEEEE--TTSE---EEE------EE--B-TTSEEEEEEEEEE-TT-------------
T ss_pred CCEEEEEEEEEECCCCcee-eEEEEEeCCCCccccCCcc------ccccCCCCCEEEEEEEEECCCC-----------CC
Confidence 3679999999999976533 24444455543100 1121 1117999999999999998442 26
Q ss_pred CeEEEEEEe
Q 003980 747 IGLHTLIVG 755 (782)
Q Consensus 747 ~G~y~i~vG 755 (782)
+|+|.|.+-
T Consensus 66 ~G~y~v~~~ 74 (78)
T PF10633_consen 66 PGTYTVTVT 74 (78)
T ss_dssp SEEEEEEEE
T ss_pred CceEEEEEE
Confidence 899998764
No 10
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=92.20 E-value=0.6 Score=40.49 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=21.5
Q ss_pred cccccccCCCCEEEEEEEeccCCCceEEeCCCCEEEeCeEEEEE
Q 003980 710 GFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLVIGLHTLI 753 (782)
Q Consensus 710 gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~y~i~ 753 (782)
.+..+.|+|||+.+.+++++. .+++ ||+|++.
T Consensus 50 al~~~~l~pGe~~~~~~~~~~-~~~~-----------~G~Y~~~ 81 (82)
T PF12690_consen 50 ALQEETLEPGESLTYEETWDL-KDLS-----------PGEYTLE 81 (82)
T ss_dssp --EEEEE-TT-EEEEEEEESS----------------SEEEEEE
T ss_pred eeeEEEECCCCEEEEEEEECC-CCCC-----------CceEEEe
Confidence 355678999999999999998 5444 8999885
No 11
>COG1470 Predicted membrane protein [Function unknown]
Probab=87.79 E-value=1.7 Score=48.89 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=52.2
Q ss_pred ceEEEEEEEEeCCCCCcceEEEEEEe-CCCCCCCCCcchhhhcccccccCCCCEEEEEEEeccCCCceEEeCCCCEEEeC
Q 003980 669 LHFHVVIGVKNNGPMSGSHVVLIFWK-PPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLVI 747 (782)
Q Consensus 669 ~~~~v~v~VtNtG~~~G~eVvQlY~~-~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~ 747 (782)
.++.++|++.|-|+-+-+-- |=++ .|..=....-.-++ .-.||.|+|||+++|++++.++. -.+|
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~--Le~~g~pe~w~~~Fteg~~-~vt~vkL~~gE~kdvtleV~ps~-----------na~p 349 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYA--LELSGLPEGWTAEFTEGEL-RVTSVKLKPGEEKDVTLEVYPSL-----------NATP 349 (513)
T ss_pred CceEEEEEEccCCCCCceeE--EEeccCCCCcceEEeeCce-EEEEEEecCCCceEEEEEEecCC-----------CCCC
Confidence 57889999999986543322 2222 22210011111111 13578899999999999999843 2479
Q ss_pred eEEEEEEeCCCcccceeEEEE
Q 003980 748 GLHTLIVGSPSERQVRHHLNV 768 (782)
Q Consensus 748 G~y~i~vG~ss~~~~~~~~~~ 768 (782)
|+|.+.|-.+|+.....+..+
T Consensus 350 G~Ynv~I~A~s~s~v~~e~~l 370 (513)
T COG1470 350 GTYNVTITASSSSGVTRELPL 370 (513)
T ss_pred CceeEEEEEeccccceeeeeE
Confidence 999998876664344433333
No 12
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=86.44 E-value=5.2 Score=35.63 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=46.1
Q ss_pred ceEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEEeccCCCceEEeCCCCEEEeCe
Q 003980 669 LHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLVIG 748 (782)
Q Consensus 669 ~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G 748 (782)
...+.+++|+|+|....+--+ +.+... .... -.-+..-.|+||++.++++++.+.+....++..-.-..|-|
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v----~~~~~~--~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~~ 91 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRV----RQPESL--SSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEGG 91 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEE----EeCCcC--CCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECCe
Confidence 568899999999998865433 333311 1110 01233456999999999999993255555543322234444
Q ss_pred EEEEEE
Q 003980 749 LHTLIV 754 (782)
Q Consensus 749 ~y~i~v 754 (782)
.+.|.|
T Consensus 92 ~~~i~v 97 (102)
T PF14874_consen 92 SFEIPV 97 (102)
T ss_pred EEEEEE
Confidence 444433
No 13
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=86.41 E-value=15 Score=41.90 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=58.5
Q ss_pred HHHcCCcceEEeeccccCC-----ccccCCHHHHHHHhhhhcCcCcEEEcCchhhhhhhccccccCChHHHHHHHHHcC-
Q 003980 247 CVQEGHVSSVMCSYNRVNG-----IPTCADPNLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAG- 320 (782)
Q Consensus 247 ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~iLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG- 320 (782)
.|+++-+ .+|.+.+++.| ..|+.++-+++.+|+.=+.. |.-+..-+ |=..+|+..|
T Consensus 60 ~iDe~lv-l~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~AepG----------------EFs~RAFLNgK 121 (454)
T COG0486 60 IIDEVLV-LYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAEPG----------------EFSKRAFLNGK 121 (454)
T ss_pred EeeeeeE-EEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecCCC----------------cchHHHHhcCC
Confidence 4556654 89999999987 57899999998888754433 23333222 2234555555
Q ss_pred CCccCC--------cchhHHHHHHHH--CCCCcHHHHHHHHHHHHHHHHHh
Q 003980 321 LNMNCG--------DYLGKYTENAVN--MSKVKESVVDQALIYNYIVLMRL 361 (782)
Q Consensus 321 ~D~~~~--------~~~~~~l~~av~--~G~i~~~~ld~av~RiL~~k~~~ 361 (782)
+|+.-- .........|++ +|.+ .+++++-.++++.+....
T Consensus 122 ~DLtqAEai~dLI~A~te~a~r~A~~~l~G~l-s~~i~~lr~~li~~~a~v 171 (454)
T COG0486 122 LDLTQAEAIADLIDAKTEQAARIALRQLQGAL-SQLINELREALLELLAQV 171 (454)
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHh
Confidence 665421 112233445554 4666 467888888888877664
No 14
>PRK13202 ureB urease subunit beta; Reviewed
Probab=84.84 E-value=1.8 Score=38.72 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=31.7
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC---CCCCcchhhhcc-------cccccCCCCEEEEEEE
Q 003980 671 FHVVIGVKNNGPMSGSHVVLIFWKPPSAS---TAGAPNVELVGF-------ERVDVQKGKTKNVTVG 727 (782)
Q Consensus 671 ~~v~v~VtNtG~~~G~eVvQlY~~~~~~~---~~~~p~k~L~gF-------~kv~L~pGes~~V~~~ 727 (782)
-+++++|+|||+++ ||+=-+..--. .+......-.|+ .-|..+|||+|+|++.
T Consensus 21 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 36889999999886 67644432221 022222222222 2356789999999874
No 15
>PRK13203 ureB urease subunit beta; Reviewed
Probab=84.42 E-value=2 Score=38.38 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=31.7
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC---CCCCcchhhhcc-------cccccCCCCEEEEEEE
Q 003980 671 FHVVIGVKNNGPMSGSHVVLIFWKPPSAS---TAGAPNVELVGF-------ERVDVQKGKTKNVTVG 727 (782)
Q Consensus 671 ~~v~v~VtNtG~~~G~eVvQlY~~~~~~~---~~~~p~k~L~gF-------~kv~L~pGes~~V~~~ 727 (782)
=.++++|+|||+++ ||+=-+..--. .+..-...-.|+ .-|..+|||+|+|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 35889999999886 77754442221 022222222222 2356789999999874
No 16
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=82.20 E-value=2.9 Score=37.30 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=32.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC---CCCCcchhhhcc-------cccccCCCCEEEEEEE
Q 003980 671 FHVVIGVKNNGPMSGSHVVLIFWKPPSAS---TAGAPNVELVGF-------ERVDVQKGKTKNVTVG 727 (782)
Q Consensus 671 ~~v~v~VtNtG~~~G~eVvQlY~~~~~~~---~~~~p~k~L~gF-------~kv~L~pGes~~V~~~ 727 (782)
=.++++|+|||+++ ||+=-+..--. .+......-.|| .-|..+|||+|+|++.
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 35889999999886 67644432111 022222223333 2456789999999874
No 17
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=81.34 E-value=3 Score=37.17 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=31.9
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC---CCCCcchhhhcc-------cccccCCCCEEEEEEE
Q 003980 671 FHVVIGVKNNGPMSGSHVVLIFWKPPSAS---TAGAPNVELVGF-------ERVDVQKGKTKNVTVG 727 (782)
Q Consensus 671 ~~v~v~VtNtG~~~G~eVvQlY~~~~~~~---~~~~p~k~L~gF-------~kv~L~pGes~~V~~~ 727 (782)
=+++++|+|||+++ ||+=-+..--. .+..-...-.|+ .-|..+||++|+|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 35889999999886 67644432111 022222222333 3456789999999874
No 18
>PRK13201 ureB urease subunit beta; Reviewed
Probab=76.73 E-value=4.9 Score=37.59 Aligned_cols=53 Identities=19% Similarity=0.095 Sum_probs=32.2
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC---CCCCcchhhhcc-------cccccCCCCEEEEEEE
Q 003980 671 FHVVIGVKNNGPMSGSHVVLIFWKPPSAS---TAGAPNVELVGF-------ERVDVQKGKTKNVTVG 727 (782)
Q Consensus 671 ~~v~v~VtNtG~~~G~eVvQlY~~~~~~~---~~~~p~k~L~gF-------~kv~L~pGes~~V~~~ 727 (782)
-+++++|+|||+++ ||+=-+..--. .+..-...-.|| .-|..+|||+|+|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 20 PETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 45889999999886 67744432211 022222222333 2456799999999884
No 19
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=76.51 E-value=4.4 Score=36.11 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=28.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCC---CCCCcchhhhcc-------cccccCCCCEEEEEEE
Q 003980 670 HFHVVIGVKNNGPMSGSHVVLIFWKPPSAS---TAGAPNVELVGF-------ERVDVQKGKTKNVTVG 727 (782)
Q Consensus 670 ~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~---~~~~p~k~L~gF-------~kv~L~pGes~~V~~~ 727 (782)
.-+++++|+|||+++ ||+=-+..-.. .+......-.|| .-|..+||++|+|++.
T Consensus 18 r~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 18 RERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp SEEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CcEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 457899999999886 77754432211 022222222333 2456789999999874
No 20
>PRK13205 ureB urease subunit beta; Reviewed
Probab=76.21 E-value=4.9 Score=38.37 Aligned_cols=53 Identities=23% Similarity=0.173 Sum_probs=32.9
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC---CCCCcchhhhcc-------cccccCCCCEEEEEEE
Q 003980 671 FHVVIGVKNNGPMSGSHVVLIFWKPPSAS---TAGAPNVELVGF-------ERVDVQKGKTKNVTVG 727 (782)
Q Consensus 671 ~~v~v~VtNtG~~~G~eVvQlY~~~~~~~---~~~~p~k~L~gF-------~kv~L~pGes~~V~~~ 727 (782)
=+++++|+|||+++ ||+=-+..--. .+......-.|| .-|..+||++|+|++.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 35889999999886 77744442211 022222223333 2456799999999985
No 21
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=75.84 E-value=6.1 Score=35.53 Aligned_cols=53 Identities=15% Similarity=-0.029 Sum_probs=29.2
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEEeccCCCceEEeCCCCEEEeCeEEE
Q 003980 672 HVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLVIGLHT 751 (782)
Q Consensus 672 ~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~y~ 751 (782)
.|+++++|.|... .++ .+.. ......|.||++++++|+-. ++|+|+
T Consensus 44 ~v~l~~~N~~~~~-h~~---~i~~--------------~~~~~~l~~g~~~~~~f~~~----------------~~G~y~ 89 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HEF---VIPD--------------LGISKVLPPGETATVTFTPL----------------KPGEYE 89 (104)
T ss_dssp EEEEEEEE-SSS--EEE---EEGG--------------GTEEEEE-TT-EEEEEEEE-----------------S-EEEE
T ss_pred eEEEEEEECCCCc-EEE---EECC--------------CceEEEECCCCEEEEEEcCC----------------CCEEEE
Confidence 3567789998775 222 1111 12336799999999988533 479999
Q ss_pred EEEeCCC
Q 003980 752 LIVGSPS 758 (782)
Q Consensus 752 i~vG~ss 758 (782)
++.+-..
T Consensus 90 ~~C~~~~ 96 (104)
T PF13473_consen 90 FYCTMHP 96 (104)
T ss_dssp EB-SSS-
T ss_pred EEcCCCC
Confidence 9887443
No 22
>PRK13204 ureB urease subunit beta; Reviewed
Probab=75.57 E-value=5.1 Score=38.36 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=32.0
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC---CCCCcchhhhcc-------cccccCCCCEEEEEEE
Q 003980 671 FHVVIGVKNNGPMSGSHVVLIFWKPPSAS---TAGAPNVELVGF-------ERVDVQKGKTKNVTVG 727 (782)
Q Consensus 671 ~~v~v~VtNtG~~~G~eVvQlY~~~~~~~---~~~~p~k~L~gF-------~kv~L~pGes~~V~~~ 727 (782)
=.++++|+|||+++ ||+=-+..--. .+......-.|| .-|..+||++++|++.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 35889999999886 67744432211 022222222333 2456789999999874
No 23
>COG1470 Predicted membrane protein [Function unknown]
Probab=75.13 E-value=12 Score=42.37 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=57.8
Q ss_pred CceEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhccccc-ccCCCCEEEEEEEeccCCCceEEeCCCCEEEe
Q 003980 668 DLHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERV-DVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLV 746 (782)
Q Consensus 668 ~~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e 746 (782)
++..++.+.|.|+|..+=+.| -|=+..|..= ..+.-.| ++ .|+|||+++|+++++...+ ..
T Consensus 396 Gee~~i~i~I~NsGna~LtdI-kl~v~~PqgW-----ei~Vd~~-~I~sL~pge~~tV~ltI~vP~~-----------a~ 457 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDI-KLTVNGPQGW-----EIEVDES-TIPSLEPGESKTVSLTITVPED-----------AG 457 (513)
T ss_pred CccceEEEEEEecCCCcccee-eEEecCCccc-----eEEECcc-cccccCCCCcceEEEEEEcCCC-----------CC
Confidence 346788999999997776654 3555555441 1223334 45 4899999999999987431 26
Q ss_pred CeEEEEEEeCCCccccee--EEEEEEecCc
Q 003980 747 IGLHTLIVGSPSERQVRH--HLNVRLARSA 774 (782)
Q Consensus 747 ~G~y~i~vG~ss~~~~~~--~~~~~~~~~~ 774 (782)
+|+|.|.+-..|+ .... +.++.|..++
T Consensus 458 aGdY~i~i~~ksD-q~s~e~tlrV~V~~sS 486 (513)
T COG1470 458 AGDYRITITAKSD-QASSEDTLRVVVGQSS 486 (513)
T ss_pred CCcEEEEEEEeec-cccccceEEEEEeccc
Confidence 8999999988774 3333 3445554443
No 24
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=74.66 E-value=11 Score=35.29 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=39.0
Q ss_pred ceEEEEEEEEeCCCCCcceEEEEEEeCCCCCC----------------CCCcchhhhcccc-cccCCCCEEEEEEEeccC
Q 003980 669 LHFHVVIGVKNNGPMSGSHVVLIFWKPPSAST----------------AGAPNVELVGFER-VDVQKGKTKNVTVGFDVC 731 (782)
Q Consensus 669 ~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~----------------~~~p~k~L~gF~k-v~L~pGes~~V~~~l~~~ 731 (782)
...+++++|+|+++-. -.+++++..-.+.. ...+..+|....+ |.|+|+|+++|+|+|...
T Consensus 27 q~~~l~v~i~N~s~~~--~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKE--ITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCC--EEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEcC
Confidence 4677888888877633 34445444422210 2235556665554 679999999999999874
No 25
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=74.44 E-value=4.9 Score=35.68 Aligned_cols=53 Identities=19% Similarity=0.168 Sum_probs=30.7
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCC----CCCCCCCcchhhhcc-------cccccCCCCEEEEEEE
Q 003980 670 HFHVVIGVKNNGPMSGSHVVLIFWKPP----SASTAGAPNVELVGF-------ERVDVQKGKTKNVTVG 727 (782)
Q Consensus 670 ~~~v~v~VtNtG~~~G~eVvQlY~~~~----~~~~~~~p~k~L~gF-------~kv~L~pGes~~V~~~ 727 (782)
.-+++++|+|||+++ +|+=-+.- +.. +..-...-.|+ .-|..+||+.|+|++-
T Consensus 19 r~~~~i~V~NtGDRP----IQVGSHfHF~EvN~a-L~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 19 RPTVTIEVANTGDRP----IQVGSHFHFFEVNRA-LSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred CcceEEEEeecCCCc----eEeecceeehhhCcc-eeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 346788899999886 66633321 111 11111112222 3466799999999874
No 26
>PRK13198 ureB urease subunit beta; Reviewed
Probab=74.00 E-value=5.9 Score=37.90 Aligned_cols=53 Identities=11% Similarity=0.037 Sum_probs=32.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC---CCCCcchhhhcc-------cccccCCCCEEEEEEE
Q 003980 671 FHVVIGVKNNGPMSGSHVVLIFWKPPSAS---TAGAPNVELVGF-------ERVDVQKGKTKNVTVG 727 (782)
Q Consensus 671 ~~v~v~VtNtG~~~G~eVvQlY~~~~~~~---~~~~p~k~L~gF-------~kv~L~pGes~~V~~~ 727 (782)
=+++++|+|||+++ ||+=-+..--. .+......-.|| .-|..+||++++|++.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 35789999999886 67744432211 022222222333 2456789999999874
No 27
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=69.93 E-value=21 Score=31.12 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=30.8
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEEecc
Q 003980 672 HVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDV 730 (782)
Q Consensus 672 ~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~l~~ 730 (782)
.+.++++|.|+.+- .++||-.. +.. ..| .++.|+||++.++.+.+..
T Consensus 21 ~l~l~l~N~g~~~~--~~~v~~~~-y~~--~~~-------~~~~v~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 21 NLRLTLSNPGSAAV--TFTVYDNA-YGG--GGP-------WTYTVAAGQTVSLTWPLAA 67 (89)
T ss_pred EEEEEEEeCCCCcE--EEEEEeCC-cCC--CCC-------EEEEECCCCEEEEEEeecC
Confidence 68899999854332 44444322 221 222 5678999999999999954
No 28
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=67.42 E-value=8.9 Score=38.60 Aligned_cols=53 Identities=19% Similarity=0.143 Sum_probs=31.9
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC---CCCCcchhhhcc-------cccccCCCCEEEEEEE
Q 003980 671 FHVVIGVKNNGPMSGSHVVLIFWKPPSAS---TAGAPNVELVGF-------ERVDVQKGKTKNVTVG 727 (782)
Q Consensus 671 ~~v~v~VtNtG~~~G~eVvQlY~~~~~~~---~~~~p~k~L~gF-------~kv~L~pGes~~V~~~ 727 (782)
=.++++|+|||+++ +|+=-+..--. .+....+.=.|| .-|..+||++|+|++.
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 35889999999886 67644432211 022222223333 2356789999999874
No 29
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=65.75 E-value=9.5 Score=39.13 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=34.3
Q ss_pred EEEeCCCCCcceEEEEEEeCCCCCC-CCCc--------chhhhcccccccCCCCEEEEEEEeccCCCceEEeCCCCEEEe
Q 003980 676 GVKNNGPMSGSHVVLIFWKPPSAST-AGAP--------NVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLV 746 (782)
Q Consensus 676 ~VtNtG~~~G~eVvQlY~~~~~~~~-~~~p--------~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e 746 (782)
++-|-|. |.-+++||-+.+.... ...| .+.+....++.|.||||-| |.+.-.-++| .|
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiT----L~Pg~yH~Fw-------~e 177 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESIT----LPPGIYHWFW-------GE 177 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEE----E-TTEEEEEE-------E-
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEe----eCCCCeeeEE-------ec
Confidence 4567764 7888999998865431 1122 3467889999999999866 6662222444 45
Q ss_pred CeEEEEEEe
Q 003980 747 IGLHTLIVG 755 (782)
Q Consensus 747 ~G~y~i~vG 755 (782)
+|. +.||
T Consensus 178 ~g~--vLig 184 (225)
T PF07385_consen 178 GGD--VLIG 184 (225)
T ss_dssp TTS--EEEE
T ss_pred CCC--EEEE
Confidence 555 6666
No 30
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=65.40 E-value=13 Score=34.46 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=37.6
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhccccc-ccCCCCEEEEEEEecc
Q 003980 672 HVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERV-DVQKGKTKNVTVGFDV 730 (782)
Q Consensus 672 ~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv-~L~pGes~~V~~~l~~ 730 (782)
..+++|+|+|+ -.-.+|+.+..........+...|.=+=.. .|+||++++|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 56899999998 667889998872111012333344444444 489999999999 554
No 31
>PRK13986 urease subunit alpha; Provisional
Probab=63.81 E-value=11 Score=38.33 Aligned_cols=53 Identities=21% Similarity=0.081 Sum_probs=31.5
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC---CCCCcchhhhcc-------cccccCCCCEEEEEEE
Q 003980 671 FHVVIGVKNNGPMSGSHVVLIFWKPPSAS---TAGAPNVELVGF-------ERVDVQKGKTKNVTVG 727 (782)
Q Consensus 671 ~~v~v~VtNtG~~~G~eVvQlY~~~~~~~---~~~~p~k~L~gF-------~kv~L~pGes~~V~~~ 727 (782)
=+++++|+|||+++ ||+=-+..--. .+..-...=.|| .-|..+||++|+|++.
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 35789999999886 67644432211 022222222233 2456789999999874
No 32
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=62.17 E-value=20 Score=34.64 Aligned_cols=55 Identities=15% Similarity=0.278 Sum_probs=42.8
Q ss_pred ceEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhcccccc-cCCCCEEEEEEEecc
Q 003980 669 LHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVD-VQKGKTKNVTVGFDV 730 (782)
Q Consensus 669 ~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv~-L~pGes~~V~~~l~~ 730 (782)
.-+.|.++.+|+++. ++--+-+..+.- ..-.++++|.++. |+||++.++.+-|+-
T Consensus 85 ~mvsIql~ftN~s~~---~i~~I~i~~k~l----~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 85 SMVSIQLTFTNNSDE---PIKNIHIGEKKL----PAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred CcEEEEEEEEecCCC---eecceEECCCCC----CCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 358899999999974 555566666541 2235789999996 999999999999986
No 33
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=57.53 E-value=16 Score=32.98 Aligned_cols=61 Identities=15% Similarity=0.049 Sum_probs=34.9
Q ss_pred CceEEEEEEEEeCCCCCcce-EEEEEEeCC-CCCCCCCcchhhhcccccccCCCCEEEEEEEecc
Q 003980 668 DLHFHVVIGVKNNGPMSGSH-VVLIFWKPP-SASTAGAPNVELVGFERVDVQKGKTKNVTVGFDV 730 (782)
Q Consensus 668 ~~~~~v~v~VtNtG~~~G~e-VvQlY~~~~-~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~l~~ 730 (782)
+..++++++++|..+..-+. -+.|.+..- ++. +.+ ....+-...+.|+|||++++++.+.+
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG-~~~-~~~~~~~~~~~l~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTG-LTR-DQFKKEKFEVTLKPGETKSVEVTITP 76 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTT-TEE-EEEEEEEEEEEE-TTEEEEEEEEE-H
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEECC-ccc-ccEeEEEcceeeCCCCEEEEEEEEEc
Confidence 35799999999999888443 122211221 222 221 12233345567999999999999998
No 34
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=56.29 E-value=33 Score=32.19 Aligned_cols=54 Identities=17% Similarity=0.353 Sum_probs=31.8
Q ss_pred EEEEEEEeCCCCC----cceEEEEEEeCCCCCC--------------CCCc-chhhhcccccc-cCCCCEEEEEEEecc
Q 003980 672 HVVIGVKNNGPMS----GSHVVLIFWKPPSAST--------------AGAP-NVELVGFERVD-VQKGKTKNVTVGFDV 730 (782)
Q Consensus 672 ~v~v~VtNtG~~~----G~eVvQlY~~~~~~~~--------------~~~p-~k~L~gF~kv~-L~pGes~~V~~~l~~ 730 (782)
+|+|+.+|+|+.+ |.-+|- ..+.... -.++ ..+..+ -+. |.+||+.+|+|+.+.
T Consensus 26 ~vtv~l~h~G~lpk~~MgHN~Vl---~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViA--hTkliggGes~svtF~~~~ 99 (125)
T TIGR02695 26 EFTVNLKHTGKLPKAVMGHNWVL---AKSADMQAVATDGMSAGADNNYVKPGDARVIA--HTKVIGGGEKTSVTFDVSK 99 (125)
T ss_pred EEEEEEecCCcCchhccCccEEE---eccccHHHHHHHHHhcccccCccCCCCcceEE--EccccCCCceEEEEEECCC
Confidence 5888999999876 666662 2222110 0111 111122 233 699999999999874
No 35
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=54.28 E-value=30 Score=33.26 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=38.3
Q ss_pred CceEEEEEEEEeCCCCCcceE---EEEEEeC-CCCCCCCCcchhhhccccc------ccCCCCEEEEEEEecc
Q 003980 668 DLHFHVVIGVKNNGPMSGSHV---VLIFWKP-PSASTAGAPNVELVGFERV------DVQKGKTKNVTVGFDV 730 (782)
Q Consensus 668 ~~~~~v~v~VtNtG~~~G~eV---vQlY~~~-~~~~~~~~p~k~L~gF~kv------~L~pGes~~V~~~l~~ 730 (782)
++++.|..+|||+|+.+=+++ +.++-.+ ........=..++.+|.+. .|+|||++.-++.++.
T Consensus 61 ~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 61 SESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred ccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 468999999999998776553 2222211 1111012223345556322 2999999999998874
No 36
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=52.29 E-value=29 Score=38.26 Aligned_cols=57 Identities=25% Similarity=0.406 Sum_probs=30.7
Q ss_pred CceEEEEEEEEeCCCCCcceEEEE---------EEeCCCCCC-CCCcchhhhcc-----c-ccccCCCCEEEEEEEec
Q 003980 668 DLHFHVVIGVKNNGPMSGSHVVLI---------FWKPPSAST-AGAPNVELVGF-----E-RVDVQKGKTKNVTVGFD 729 (782)
Q Consensus 668 ~~~~~v~v~VtNtG~~~G~eVvQl---------Y~~~~~~~~-~~~p~k~L~gF-----~-kv~L~pGes~~V~~~l~ 729 (782)
+.+++++++|||+|+- .|+| |+.+..... ...|. +|.+- . .--++|||++++++++.
T Consensus 262 gR~l~~~l~VtN~g~~----pv~LgeF~tA~vrFln~~v~~~~~~~P~-~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 262 GRTLTMTLTVTNNGDS----PVRLGEFNTANVRFLNPDVPTDDPDYPD-ELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp SSEEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---T-TTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred CcEEEEEEEEEcCCCC----ceEeeeEEeccEEEeCcccccCCCCCch-hhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 4689999999999753 3443 222221110 12233 55554 2 22489999999999984
No 37
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=51.98 E-value=18 Score=33.03 Aligned_cols=62 Identities=24% Similarity=0.277 Sum_probs=31.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEE-E----eCCCCC-CCCCcch---hhhccc--ccccCCCCEEEEEEEeccC
Q 003980 670 HFHVVIGVKNNGPMSGSHVVLIF-W----KPPSAS-TAGAPNV---ELVGFE--RVDVQKGKTKNVTVGFDVC 731 (782)
Q Consensus 670 ~~~v~v~VtNtG~~~G~eVvQlY-~----~~~~~~-~~~~p~k---~L~gF~--kv~L~pGes~~V~~~l~~~ 731 (782)
..+.+++|+|.|+.+=.--+... + .+.... ....+.. ....|. ++.|+||++++|+++++..
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 47889999999986554333333 1 110010 0111111 033343 6679999999999999983
No 38
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=50.77 E-value=31 Score=26.12 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=25.5
Q ss_pred EEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEE
Q 003980 674 VIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVG 727 (782)
Q Consensus 674 ~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~ 727 (782)
+++++|+|+.. ++++=-..... =. ...+.|-.|+|||+-.++++
T Consensus 1 ~F~~~N~g~~~----L~I~~v~tsCg-Ct-----~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 1 TFEFTNTGDSP----LVITDVQTSCG-CT-----TAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred CEEEEECCCCc----EEEEEeeEccC-CE-----EeeCCcceECCCCEEEEEEE
Confidence 36789997543 33322222221 11 12256666999999998876
No 39
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=50.55 E-value=34 Score=35.65 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=32.8
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCC---C-CCCcchhhhcccccccCCCCEEEEEEEec
Q 003980 672 HVVIGVKNNGPMSGSHVVLIFWKPPSAS---T-AGAPNVELVGFERVDVQKGKTKNVTVGFD 729 (782)
Q Consensus 672 ~v~v~VtNtG~~~G~eVvQlY~~~~~~~---~-~~~p~k~L~gF~kv~L~pGes~~V~~~l~ 729 (782)
.++++|+|+|+. .-.||.-+.+.... . +..|. -..|+||+++.|.+-..
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~fivtPP-------l~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPEDKSKLLLVTPP-------VARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCCCCCCEEEcCC-------eEEECCCCceEEEEEEC
Confidence 467888999975 48889988764322 0 11121 14589999999997643
No 40
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=47.35 E-value=58 Score=26.34 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHhc-CCcEEEEEe
Q 003980 509 GYQEKLVMEVANAT-KGTVILVVM 531 (782)
Q Consensus 509 ~~q~~Li~~va~~~-~~pvVvVl~ 531 (782)
.+|..|.+++.... ++|+|+|++
T Consensus 32 e~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 32 EEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 68999999998766 789988875
No 41
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=46.36 E-value=15 Score=40.37 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=34.5
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCChh--HHHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGY--QEKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~--q~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..++||+||++.|... .+|.+|.++--... -+++++++.+..++..|+++. +||+++.
T Consensus 75 ~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 135 (323)
T TIGR01759 75 EAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTN 135 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHH
Confidence 56789999999998642 35556654321111 234556666544424554444 5899773
No 42
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=43.38 E-value=63 Score=30.28 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=39.2
Q ss_pred eEEEEEEEEeCCCC----CcceEEEEEEeCCCCCCCCC-cchhhhcccccccCCCCEEEEEEEecc
Q 003980 670 HFHVVIGVKNNGPM----SGSHVVLIFWKPPSASTAGA-PNVELVGFERVDVQKGKTKNVTVGFDV 730 (782)
Q Consensus 670 ~~~v~v~VtNtG~~----~G~eVvQlY~~~~~~~~~~~-p~k~L~gF~kv~L~pGes~~V~~~l~~ 730 (782)
.-.+.+++||+|+. .|.=-|++.-.+- .. +.. ..++-..=+.|.|+||++....|....
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g-~~-~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALVDADG-AP-LGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEECCCC-Cc-CCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 45789999999974 6776777772221 11 111 222223456788999999999888876
No 43
>COG1160 Predicted GTPases [General function prediction only]
Probab=42.15 E-value=59 Score=37.10 Aligned_cols=47 Identities=36% Similarity=0.393 Sum_probs=31.7
Q ss_pred HHHHHHhhcCCeEEEEEccCCcccccCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEec
Q 003980 473 EPAAKAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMA 532 (782)
Q Consensus 473 ~~a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvVvVl~~ 532 (782)
+++..++++||++|+++.. .+| +....+++.+-+. ..+||+|+|+|-
T Consensus 75 ~Qa~~Ai~eADvilfvVD~-----~~G-------it~~D~~ia~~Lr-~~~kpviLvvNK 121 (444)
T COG1160 75 EQALIAIEEADVILFVVDG-----REG-------ITPADEEIAKILR-RSKKPVILVVNK 121 (444)
T ss_pred HHHHHHHHhCCEEEEEEeC-----CCC-------CCHHHHHHHHHHH-hcCCCEEEEEEc
Confidence 3466678999999999853 122 3344555555555 457999999883
No 44
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=42.02 E-value=1.4e+02 Score=25.58 Aligned_cols=76 Identities=14% Similarity=0.072 Sum_probs=44.3
Q ss_pred eEEEEEEEEeC-CCCCcceEEEEEEeCCCCCC-CCCcchhhhcccccccCCCCEEEEEEEeccCCCceEEeCCCCEEEeC
Q 003980 670 HFHVVIGVKNN-GPMSGSHVVLIFWKPPSAST-AGAPNVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLVI 747 (782)
Q Consensus 670 ~~~v~v~VtNt-G~~~G~eVvQlY~~~~~~~~-~~~p~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~ 747 (782)
.+++++.+-|. ....--.-+++|++...... +..+. .-.|.||++..|+|.+.. +.+ +.+..|.+++..
T Consensus 5 ~f~A~i~il~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~-------~~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~ 75 (87)
T cd03708 5 EFEAEILVLHHPTTISPGYQATVHIGSIRQTARIVSID-------KDVLRTGDRALVRFRFLY-HPE-YLREGQRLIFRE 75 (87)
T ss_pred EEEEEEEEEcCCCcccCCCEeEEEEcCCEEEEEEEecc-------HhhccCCCeEEEEEEECC-CCc-EEccCCeEEEEC
Confidence 46666666662 33333344567776643210 11121 146899999999999643 346 445556777777
Q ss_pred eEEEEEEe
Q 003980 748 GLHTLIVG 755 (782)
Q Consensus 748 G~y~i~vG 755 (782)
| -++.+|
T Consensus 76 g-~tva~G 82 (87)
T cd03708 76 G-RTKGVG 82 (87)
T ss_pred C-CcEEEE
Confidence 7 566666
No 45
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=39.27 E-value=16 Score=39.94 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=32.5
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCChhH----HHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQ----EKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..+++|+||++.|... .+|.+|.++- ..- +++++++.+..++..++ ++.+||+++.
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dll--~~N~~I~~~i~~~i~~~a~~~~iv-ivvtNPvDv~ 116 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADLL--TKNTPIFKATGEALSEYAKPTVKV-LVIGNPVNTN 116 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHH--HHHHHHHHHHHHHHHhhCCCCeEE-EEeCCchHHH
Confidence 46789999999988642 3455664421 122 34455555443232443 4446899774
No 46
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=38.74 E-value=66 Score=24.60 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=25.9
Q ss_pred HHHHHHCCCCcHHHHHHHHHHHHHHHHHhC
Q 003980 333 TENAVNMSKVKESVVDQALIYNYIVLMRLG 362 (782)
Q Consensus 333 l~~av~~G~i~~~~ld~av~RiL~~k~~~G 362 (782)
.+..++.-.-+.+.|+..|..+|.+|-.+|
T Consensus 13 ~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 13 LVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 455667778889999999999999999987
No 47
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=36.71 E-value=3e+02 Score=29.62 Aligned_cols=31 Identities=23% Similarity=0.146 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCceeeeeecccccc
Q 003980 177 VSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAY 214 (782)
Q Consensus 177 ~~~~a~a~v~GlQ~~~~g~~~~~~~~~v~a~~KHF~g~ 214 (782)
++.+...||+-+.+. + ..-+|.+|-|.+||.
T Consensus 105 IAT~T~~~V~~~~~~--~-----~~~~I~~TRKT~Pg~ 135 (277)
T TIGR01334 105 VATYTHKMVTLAKKI--S-----PMAVVACTRKAIPLT 135 (277)
T ss_pred HHHHHHHHHHHHHhc--C-----CCCEEEecCCCCCCh
Confidence 678888999999864 2 234599999999983
No 48
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.63 E-value=1.3e+02 Score=30.12 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=50.5
Q ss_pred CceEEEEEEEEeCCCCCcceEEEEEE-eCCCCCCCCCcchh-hhccc--c-cccCCCCEEEEEEEeccCCCceEEeCCCC
Q 003980 668 DLHFHVVIGVKNNGPMSGSHVVLIFW-KPPSASTAGAPNVE-LVGFE--R-VDVQKGKTKNVTVGFDVCQGLNLVDTDGQ 742 (782)
Q Consensus 668 ~~~~~v~v~VtNtG~~~G~eVvQlY~-~~~~~~~~~~p~k~-L~gF~--k-v~L~pGes~~V~~~l~~~~~ls~~d~~~~ 742 (782)
++.++|+++|.|.|+-+-.+|.- .= +.|... =+ ..|-. + -+|+||++.+.++.|.+ .....++-...
T Consensus 37 g~~v~V~~~iyN~G~~~A~dV~l-~D~~fp~~~------F~lvsG~~s~~~~~i~pg~~vsh~~vv~p-~~~G~f~~~~a 108 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSSAAYDVKL-TDDSFPPED------FELVSGSLSASWERIPPGENVSHSYVVRP-KKSGYFNFTPA 108 (181)
T ss_pred CcEEEEEEEEEECCCCeEEEEEE-ECCCCCccc------cEeccCceEEEEEEECCCCeEEEEEEEee-eeeEEEEccCE
Confidence 46799999999999887666543 22 222211 01 11211 1 25899999999999998 65767765432
Q ss_pred ---EEEeCeEEEEEEeCCC
Q 003980 743 ---RKLVIGLHTLIVGSPS 758 (782)
Q Consensus 743 ---~~~e~G~y~i~vG~ss 758 (782)
+..+.|.=...++.||
T Consensus 109 ~VtY~~~~~~~~~~~a~Ss 127 (181)
T PF05753_consen 109 VVTYRDSEGAKELQVAYSS 127 (181)
T ss_pred EEEEECCCCCceeEEEEec
Confidence 3334444445555554
No 49
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=36.18 E-value=56 Score=26.58 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHhcCCHHHHHHH
Q 003980 45 LTYEDRAKNLVSLLTLKEKVQQ 66 (782)
Q Consensus 45 ~~~~~r~~~ll~~MTleEKv~q 66 (782)
+++|+|.+.|=.++--.|+-.+
T Consensus 28 ltiEqRLa~LE~rL~~ae~ra~ 49 (60)
T PF11471_consen 28 LTIEQRLAALEQRLQAAEQRAQ 49 (60)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999888877666543
No 50
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=35.05 E-value=50 Score=25.94 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.7
Q ss_pred CceEEEEEEEEeCCCCCcce
Q 003980 668 DLHFHVVIGVKNNGPMSGSH 687 (782)
Q Consensus 668 ~~~~~v~v~VtNtG~~~G~e 687 (782)
++.++.+++|+|+|......
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~ 30 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATN 30 (53)
T ss_pred CCEEEEEEEEEECCCCceEe
Confidence 46899999999999876554
No 51
>PLN02303 urease
Probab=34.55 E-value=50 Score=40.61 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=32.3
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCC---CCCCcchhhhcc-------cccccCCCCEEEEEEE
Q 003980 672 HVVIGVKNNGPMSGSHVVLIFWKPPSAS---TAGAPNVELVGF-------ERVDVQKGKTKNVTVG 727 (782)
Q Consensus 672 ~v~v~VtNtG~~~G~eVvQlY~~~~~~~---~~~~p~k~L~gF-------~kv~L~pGes~~V~~~ 727 (782)
+++++|+|||+++ ||+=-+..--. .+..-...=.|| .-|..+|||+|+|++.
T Consensus 151 ~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 151 AVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred eEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 5789999999887 67744442221 022222223333 2466799999999985
No 52
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=34.27 E-value=93 Score=34.42 Aligned_cols=56 Identities=25% Similarity=0.415 Sum_probs=32.8
Q ss_pred CceEEEEEEEEeCCCCCcceEEEE---------EEeC---CCCCCCCCcchhhhc--cc---ccccCCCCEEEEEEEec
Q 003980 668 DLHFHVVIGVKNNGPMSGSHVVLI---------FWKP---PSASTAGAPNVELVG--FE---RVDVQKGKTKNVTVGFD 729 (782)
Q Consensus 668 ~~~~~v~v~VtNtG~~~G~eVvQl---------Y~~~---~~~~~~~~p~k~L~g--F~---kv~L~pGes~~V~~~l~ 729 (782)
+..++++++|||.|+- .|.| |+.+ +... ...|. +|.+ -. ...++|||+|+|+++..
T Consensus 281 GR~l~~~~~VTN~g~~----~vrlgEF~TA~vRFlN~~~v~~~~-~~yP~-~lla~GL~v~d~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 281 GRALRVTMEITNNGDQ----VISIGEFTTAGIRFMNANGVRVLD-PDYPR-ELLAEGLEVDDQSAIAPGETVEVKMEAK 353 (399)
T ss_pred CcEEEEEEEEEcCCCC----ceEEEeEeecceEeeCcccccccC-CCChH-HHhhccceeCCCCCcCCCcceEEEEEEe
Confidence 3579999999999753 3332 2222 0111 22333 3332 22 22489999999998876
No 53
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.00 E-value=2.2e+02 Score=30.53 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=30.1
Q ss_pred HHHHHHhhhhcCcCcEEEcCchhhhhhhccccccCChHHHHHHHHHcCCCccCCcc-hhHHHHHHH
Q 003980 273 NLLKGVVRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLNMNCGDY-LGKYTENAV 337 (782)
Q Consensus 273 ~ll~~iLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~-~~~~l~~av 337 (782)
..+.. +|+...|.=.|+-+... . |-+..|+.+|.|++|... ..+.+.++|
T Consensus 170 ~~v~~-~k~~~p~~~~I~VEv~t-------------l-eea~~A~~~GaDiI~LDn~~~e~l~~~v 220 (273)
T PRK05848 170 EFIQH-ARKNIPFTAKIEIECES-------------L-EEAKNAMNAGADIVMCDNMSVEEIKEVV 220 (273)
T ss_pred HHHHH-HHHhCCCCceEEEEeCC-------------H-HHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence 34443 47888875556666532 2 345778999999987533 233444444
No 54
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=33.85 E-value=38 Score=30.28 Aligned_cols=12 Identities=33% Similarity=0.285 Sum_probs=5.9
Q ss_pred CCchhhHHHHHH
Q 003980 1 MKPQYHLSLCLA 12 (782)
Q Consensus 1 m~~~~~~~~~l~ 12 (782)
|.++.+++|.|+
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 665544444433
No 55
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=33.74 E-value=47 Score=38.68 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=34.5
Q ss_pred hhhhcCcCcEEEcCchhhhhhhccccccCChHHHHHHHHHcCCCccCC
Q 003980 279 VRDQWGLDGYIVSDCDSIQVYDTAIRYTATPEDAVALALNAGLNMNCG 326 (782)
Q Consensus 279 LR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~ 326 (782)
|++=+||+|.|+||.++.+.+. ......++++...---.-|.|+.|.
T Consensus 75 lh~f~~w~g~ilTDSGgfQv~s-~g~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 75 LHKLLGFDGPIMTDSGSYQLLV-YGDVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred HHHHhCCCCCeEeccCCcEEEE-cCCccCCHHHHHHHHHHhCCCEEeE
Confidence 6777899999999999866443 2223457777766666679999874
No 56
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=33.24 E-value=2.2e+02 Score=25.20 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=35.3
Q ss_pred CceEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEEecc
Q 003980 668 DLHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDV 730 (782)
Q Consensus 668 ~~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~l~~ 730 (782)
++...++++++|+.+.+-.=--.+|-=+..+- ...|. .-.++.+.|.++++.+|+..-+.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~-~v~~~--~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGL-EVDPE--QSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS--EE--T--T---EEEEE-TT-EEEEEEE-SS
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCC-CcCCC--CCCCEEEEEcCCCEEEEEEECCC
Confidence 46789999999998877665555555555543 12222 25688999999999999887665
No 57
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=32.51 E-value=86 Score=32.71 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=33.3
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCC-----CCCcchhhhcccccccCCCCEEEEEEEecc
Q 003980 672 HVVIGVKNNGPMSGSHVVLIFWKPPSAST-----AGAPNVELVGFERVDVQKGKTKNVTVGFDV 730 (782)
Q Consensus 672 ~v~v~VtNtG~~~G~eVvQlY~~~~~~~~-----~~~p~k~L~gF~kv~L~pGes~~V~~~l~~ 730 (782)
.++++|+|+++ ..--.||..+.+..... +..|. ..|+||+++++.|-...
T Consensus 44 ~~sv~i~N~~~-~~p~LvQsWv~~~~~~~~~pFivtPPl--------frl~~~~~~~lRI~~~~ 98 (228)
T PRK15188 44 QTSLPIINSSA-SNVFLIQSWVANADGSRSTDFIITPPL--------FVIQPKKENILRIMYVG 98 (228)
T ss_pred eEEEEEEeCCC-CccEEEEEEEecCCCCccCCEEEcCCe--------EEECCCCceEEEEEECC
Confidence 57889999985 22367999997654320 11222 35899999999986653
No 58
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=32.05 E-value=52 Score=27.51 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.2
Q ss_pred CceEEEEEEEEeCCCCCcce
Q 003980 668 DLHFHVVIGVKNNGPMSGSH 687 (782)
Q Consensus 668 ~~~~~v~v~VtNtG~~~G~e 687 (782)
++.++.+++|+|+|......
T Consensus 40 Gd~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATN 59 (76)
T ss_pred CCEEEEEEEEEECCCCeeEe
Confidence 47899999999999988655
No 59
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=31.92 E-value=80 Score=32.94 Aligned_cols=50 Identities=6% Similarity=0.056 Sum_probs=33.7
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhcccc----cccCCCCEEEEEEEec
Q 003980 672 HVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFER----VDVQKGKTKNVTVGFD 729 (782)
Q Consensus 672 ~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~k----v~L~pGes~~V~~~l~ 729 (782)
.++++|+|+|+. .-.||..+.+........| |-= ..|+||++++|+|-..
T Consensus 39 ~~si~i~N~~~~--p~LvQswv~~~~~~~~~~p------FivtPPlfrl~p~~~q~lRI~~~ 92 (229)
T PRK15211 39 NISFEVTNQADQ--TYGGQVWIDNTTQGSSTVY------MVPAPPFFKVRPKEKQIIRIMKT 92 (229)
T ss_pred eEEEEEEeCCCC--cEEEEEEEecCCCCCccCC------EEEcCCeEEECCCCceEEEEEEC
Confidence 468889999986 4899999976432200011 221 2479999999998655
No 60
>PLN00135 malate dehydrogenase
Probab=31.00 E-value=36 Score=37.18 Aligned_cols=59 Identities=15% Similarity=0.335 Sum_probs=32.9
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCCh--hHHHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPG--YQEKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..++||+||++.|... .+|.+|.++--.. --+++++++.+..+...+++ +.+||+++.
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivi-vvsNPvDv~ 114 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVL-VVANPANTN 114 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCcHHHH
Confidence 46789999999998743 2454564321110 11345566665212334444 446899774
No 61
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=30.93 E-value=3.8e+02 Score=23.84 Aligned_cols=59 Identities=8% Similarity=0.092 Sum_probs=40.8
Q ss_pred ceEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEEecc
Q 003980 669 LHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDV 730 (782)
Q Consensus 669 ~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~l~~ 730 (782)
+...+++.|+|+.+.+-.=-=.+|-=+..+= ...|. .-.++.+.|.++|+.+|+..-+-
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~-~v~~~--~~~w~~l~l~~~~~~~l~~~ap~ 90 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGL-EVEPE--QEPWQSLTLPGGQTVTLQAVAPN 90 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCC-CcCCC--CCCCEEEEECCCCeEEEEEEcCC
Confidence 5689999999998765444444444444442 22222 56789999999999999876654
No 62
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.81 E-value=36 Score=37.38 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=32.7
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCChhH----HHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQ----EKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..++||+||++.|... .+|.+|.++ =... +++.+++.+..++..|+ ++.+||+++.
T Consensus 74 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~ii-ivvsNPvD~~ 134 (322)
T cd01338 74 VAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKV-LVVGNPCNTN 134 (322)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEE-EEecCcHHHH
Confidence 56789999999988642 345566443 1222 23445555443223444 4446899774
No 63
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=30.59 E-value=1.6e+02 Score=33.71 Aligned_cols=57 Identities=23% Similarity=0.200 Sum_probs=32.3
Q ss_pred chHHHHHHhhc---CCeEEEEEccCCcccccCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 471 LIEPAAKAAAA---ADVVVVVVGLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 471 ~~~~a~~~a~~---aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
.+..|.+.+.. .|++||+=|.- ...+| .+=+...+++++++ ++.|||. -.|-=.|.+
T Consensus 174 ~i~~al~~~~~~~~~dviii~RGGG--------s~eDL-~~Fn~e~~~rai~~-~~~Pvis--~iGHe~D~t 233 (432)
T TIGR00237 174 SIVESIELANTKNECDVLIVGRGGG--------SLEDL-WSFNDEKVARAIFL-SKIPIIS--AVGHETDFT 233 (432)
T ss_pred HHHHHHHHhhcCCCCCEEEEecCCC--------CHHHh-hhcCcHHHHHHHHc-CCCCEEE--ecCcCCCcc
Confidence 44555554443 68777765532 22222 12356789999984 6888753 346555544
No 64
>PRK05442 malate dehydrogenase; Provisional
Probab=30.54 E-value=32 Score=37.93 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=32.2
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCChhH----HHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQ----EKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..++||+||++.|... .+|.+|.++- ..- +++++++.+..++..++ ++.+||+++.
T Consensus 76 ~~~~daDiVVitaG~~~---k~g~tR~dll--~~Na~i~~~i~~~i~~~~~~~~ii-ivvsNPvDv~ 136 (326)
T PRK05442 76 VAFKDADVALLVGARPR---GPGMERKDLL--EANGAIFTAQGKALNEVAARDVKV-LVVGNPANTN 136 (326)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHHhCCCCeEE-EEeCCchHHH
Confidence 56789999999888532 3455664431 222 33445555423223443 3446899874
No 65
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=30.42 E-value=35 Score=30.01 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=13.4
Q ss_pred ccccCCCCEEEEEEEecc
Q 003980 713 RVDVQKGKTKNVTVGFDV 730 (782)
Q Consensus 713 kv~L~pGes~~V~~~l~~ 730 (782)
++.|+|||+++|.|-+-.
T Consensus 67 ~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 67 RVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp EEEE-TT-EEEEEEEEEE
T ss_pred EEEECCCCEEEEEEEEEE
Confidence 678999999999998754
No 66
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=30.15 E-value=1.7e+02 Score=27.82 Aligned_cols=63 Identities=8% Similarity=0.008 Sum_probs=42.1
Q ss_pred CceEEEEEEEEeCCCCCcce-EEEEEEeCCCCCC----CCCcchhhhcc--cccccCCCCEEEEEEEecc
Q 003980 668 DLHFHVVIGVKNNGPMSGSH-VVLIFWKPPSAST----AGAPNVELVGF--ERVDVQKGKTKNVTVGFDV 730 (782)
Q Consensus 668 ~~~~~v~v~VtNtG~~~G~e-VvQlY~~~~~~~~----~~~p~k~L~gF--~kv~L~pGes~~V~~~l~~ 730 (782)
.+.+.++.++.|+++.+=.- .+++-+.+..... +-.|..-|..- .+..|+||++.++++.+..
T Consensus 67 ~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 67 PGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 35799999999999765433 5566666655431 33454444433 2445999999999998884
No 67
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=29.90 E-value=11 Score=35.94 Aligned_cols=55 Identities=25% Similarity=0.504 Sum_probs=30.3
Q ss_pred HhhcCCeEEEEEccCCcccccCCCCCCCCCChhHH----HHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 478 AAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQE----KLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 478 ~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
..+++|++|++.|... .+|.+|.++- .... ++.+++.+.+++.+++| ..+|+++.
T Consensus 66 ~~~~aDivvitag~~~---~~g~sR~~ll--~~N~~i~~~~~~~i~~~~p~~~viv--vtNPvd~~ 124 (141)
T PF00056_consen 66 ALKDADIVVITAGVPR---KPGMSRLDLL--EANAKIVKEIAKKIAKYAPDAIVIV--VTNPVDVM 124 (141)
T ss_dssp GGTTESEEEETTSTSS---STTSSHHHHH--HHHHHHHHHHHHHHHHHSTTSEEEE---SSSHHHH
T ss_pred ccccccEEEEeccccc---cccccHHHHH--HHhHhHHHHHHHHHHHhCCccEEEE--eCCcHHHH
Confidence 4678999998887642 3454554321 2222 34445555555544333 36799863
No 68
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=29.82 E-value=33 Score=37.27 Aligned_cols=58 Identities=26% Similarity=0.396 Sum_probs=33.9
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCCh--hHHHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPG--YQEKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..++||+||++.|... .+|.+|.++..-. --+++.+++.+.+++ .+ |++.++|.++.
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~-~~-viv~sNP~d~~ 121 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYGPD-AI-ILVVSNPVDIL 121 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eE-EEEccChHHHH
Confidence 46789999999998643 3455665432211 123455556554433 44 44556899763
No 69
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=29.64 E-value=29 Score=39.12 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=31.6
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCChhHHH----HHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQEK----LVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~----Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..+++|+||++.|... .+|.+|.++ =..-.+ +.+++.+..++..| |++.+||+++.
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~dl--l~~N~~I~k~i~~~I~~~a~~~~i-viVVsNPvDv~ 176 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERADL--LDINGQIFADQGKALNAVASKNCK-VLVVGNPCNTN 176 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCCeE-EEEcCCcHHHH
Confidence 46789999999888642 345556432 122223 33444442223344 44456899874
No 70
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=29.00 E-value=1.7e+02 Score=33.62 Aligned_cols=58 Identities=26% Similarity=0.265 Sum_probs=33.4
Q ss_pred cchHHHHHHhhc--CCeEEEEEccCCcccccCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 470 SLIEPAAKAAAA--ADVVVVVVGLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 470 ~~~~~a~~~a~~--aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
..+.+|.+.+.. .|++|++=|.- ...+| .+=++..+++++++ ++.|||. -.|-=.|.+
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RGGG--------S~eDL-~~Fn~e~v~~ai~~-~~~Pvis--~IGHE~D~t 238 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARGGG--------SLEDL-WAFNDEAVARAIAA-SRIPVIS--AVGHETDFT 238 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCC--------CHHHh-hccCcHHHHHHHHc-CCCCEEE--eccCCCCcc
Confidence 345556666555 58777765431 22222 12357789999985 6889653 345444443
No 71
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=28.86 E-value=34 Score=31.25 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=32.6
Q ss_pred ccccCCCCCccCcccccccCCccceeecccCcccCCcccccccccccCCCceEEEEEEEEeCCCCCcceEEEEEEeC
Q 003980 619 VYPFGHGLSYSSFSKFIVSAPSTVLIKKNRNSIHSSHAQAIDVTTVNCKDLHFHVVIGVKNNGPMSGSHVVLIFWKP 695 (782)
Q Consensus 619 ~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~eVvQlY~~~ 695 (782)
-|-.-||+.||+|....-.+.....+-+. .+++.=...++|+|+|+..=.=-+=-|+..
T Consensus 31 ~y~~~~g~g~~~f~~~~~gi~~~~~v~V~------------------~~~~vEi~~l~l~N~~~~~r~L~vtsy~E~ 89 (110)
T PF06165_consen 31 EYEVRHGFGYTRFEREDGGIETELTVFVP------------------PDDPVEIRRLRLTNTSNRPRRLSVTSYAEW 89 (110)
T ss_dssp EEEEEEESSEEEEEEEETTEEEEEEEE--------------------TTSSEEEEEEEEEE-SSS-EEEEEEEEEEE
T ss_pred cEEEEECCCeEEEEEEeCCEEEEEEEEEc------------------CCCCEEEEEEEEEECcCCcEEEEEEEEEEE
Confidence 47789999999999875443222111110 011223468999999987665444444433
No 72
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=28.68 E-value=1.1e+02 Score=31.87 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=33.5
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCC-----C--CCCcchhhhcccccccCCCCEEEEEEEec
Q 003980 672 HVVIGVKNNGPMSGSHVVLIFWKPPSAS-----T--AGAPNVELVGFERVDVQKGKTKNVTVGFD 729 (782)
Q Consensus 672 ~v~v~VtNtG~~~G~eVvQlY~~~~~~~-----~--~~~p~k~L~gF~kv~L~pGes~~V~~~l~ 729 (782)
.++++|+|+|+. .-.||..+.+.... . +..|. ..|+||++++|.|...
T Consensus 36 ~~si~i~N~~~~--p~LvQsWv~~~~~~~~~~~pFivtPPl--------~rl~p~~~q~lRI~~~ 90 (226)
T PRK15295 36 ESSINVENKDSK--ANLVQSWLSVVDPQVTNKQAFIITPPL--------FRLDAGQKNSIRVIRS 90 (226)
T ss_pred eeEEEEEeCCCC--cEEEEEEEeCCCCCCCCCCCEEEcCCe--------EEECCCCceEEEEEEC
Confidence 578899999986 48899999764321 0 11222 3589999999998654
No 73
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=28.32 E-value=1.2e+02 Score=29.66 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=26.1
Q ss_pred cccCCCCEEEEEEEeccCCCceEEeCCCCEEEeCeEEEEEEeCCCcccceeEEEEEE
Q 003980 714 VDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLVIGLHTLIVGSPSERQVRHHLNVRL 770 (782)
Q Consensus 714 v~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~y~i~vG~ss~~~~~~~~~~~~ 770 (782)
+.|+||+|.+++..++. +|+|+|++----..+.-....++|
T Consensus 116 v~L~PG~s~elvv~ft~----------------~g~ye~~C~iPGHy~AGM~g~itV 156 (158)
T COG4454 116 VTLAPGKSGELVVVFTG----------------AGKYEFACNIPGHYEAGMVGEITV 156 (158)
T ss_pred eEeCCCCcEEEEEEecC----------------CccEEEEecCCCcccCCcEEEEEe
Confidence 46999999998888874 477777665333333333444444
No 74
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=28.26 E-value=1.1e+02 Score=21.26 Aligned_cols=25 Identities=8% Similarity=0.020 Sum_probs=22.3
Q ss_pred HHHHHHHHCCCCcHHHHHHHHHHHH
Q 003980 331 KYTENAVNMSKVKESVVDQALIYNY 355 (782)
Q Consensus 331 ~~l~~av~~G~i~~~~ld~av~RiL 355 (782)
..|.+...+|.||++..++.-.+||
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5678889999999999999988887
No 75
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=27.63 E-value=45 Score=36.64 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=32.6
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCChhH----HHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQ----EKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..+++|+||++.|... .+|.+|.++- ..- +++.+++.+..+...++++ .+||+++.
T Consensus 72 ~~~~~aDiVVitAG~~~---~~g~tR~dll--~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~~ 132 (323)
T cd00704 72 EAFKDVDVAILVGAFPR---KPGMERADLL--RKNAKIFKEQGEALNKVAKPTVKVLV-VGNPANTN 132 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CcCCcHHHHH--HHhHHHHHHHHHHHHHhCCCCeEEEE-eCCcHHHH
Confidence 56789999999988642 3455664421 222 3455555554223344444 46899863
No 76
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=27.62 E-value=1.4e+02 Score=34.74 Aligned_cols=59 Identities=19% Similarity=0.114 Sum_probs=38.7
Q ss_pred ceEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhh-cccccccCCCCEEEEEEEecc
Q 003980 669 LHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELV-GFERVDVQKGKTKNVTVGFDV 730 (782)
Q Consensus 669 ~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~-gF~kv~L~pGes~~V~~~l~~ 730 (782)
...+++++|+|+|...-+.+.-.|.. |.. ..-|..+.. -+-.-.|.|||+..|+|.+..
T Consensus 167 ~~~~l~~~I~N~G~~~~~~v~l~~~~-~~~--~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 167 ETNTLTLTIKNPGEGPAKNVSLSLES-PTS--YLGPIYSANDTPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred CccEEEEEEEeCCcccccceEEEEeC-Ccc--eeccccccccceeeeeeCCCceEEEEEEEEe
Confidence 34589999999999888887777754 110 011111111 122335899999999999997
No 77
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=27.48 E-value=36 Score=39.12 Aligned_cols=57 Identities=12% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCChhH----HHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQ----EKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..+++|+||++.|... ++|.+|.++- ..- +++.+++.+..+...+ |++.+||+++.
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~dLl--~~N~~I~k~i~~~I~~~a~p~~i-vIVVsNPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERADLL--DINGQIFAEQGKALNEVASRNVK-VIVVGNPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhcCCCeE-EEEcCCcHHHH
Confidence 46789999999888642 3555664431 222 2344455541122344 34456899874
No 78
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=27.07 E-value=2.3e+02 Score=28.76 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=39.9
Q ss_pred ceEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhccccc----------ccCCCCEEEEEEEeccCCCceEEe
Q 003980 669 LHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERV----------DVQKGKTKNVTVGFDVCQGLNLVD 738 (782)
Q Consensus 669 ~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv----------~L~pGes~~V~~~l~~~~~ls~~d 738 (782)
+..++++.|+=++. ++.=+|+|+--+|... .+.+.. |..+. .|+|||..+++|+|.+.
T Consensus 96 G~~~l~L~vs~~~~-d~~l~v~L~dv~pdG~--~~~it~--G~l~~s~r~~~~~~~~~~pg~~~~~~i~L~p~------- 163 (218)
T PF08530_consen 96 GPPSLRLWVSSDAP-DADLFVRLSDVDPDGT--STLITR--GWLRASHRESDEKPEPLEPGEPYDVTIELQPT------- 163 (218)
T ss_dssp EEEEEEEEEEESSS-S-EEEEEEEEEETTSS--EEEEEE--EEEEGGGSSCSSST----TT-EEEEEEEEEEE-------
T ss_pred cceEEEEEEEecCC-CcEEEEEEEEeCCCCC--EEEccc--eEEEcccccCccccccCCCCcEEEEEEEEchh-------
Confidence 35666666764444 4466777776666664 222221 33333 48999999999999872
Q ss_pred CCCCEEEeCeE-EEEEEeCC
Q 003980 739 TDGQRKLVIGL-HTLIVGSP 757 (782)
Q Consensus 739 ~~~~~~~e~G~-y~i~vG~s 757 (782)
.|++++|. ..|.|.++
T Consensus 164 ---~~~~~~GhrLrl~I~~~ 180 (218)
T PF08530_consen 164 ---AYVFPAGHRLRLSISSS 180 (218)
T ss_dssp ---EEEE-TT-EEEEEEESS
T ss_pred ---ccEECCCCEEEEEEEec
Confidence 35667763 44455543
No 79
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=26.26 E-value=1.9e+02 Score=30.44 Aligned_cols=49 Identities=12% Similarity=0.073 Sum_probs=35.1
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCC-----CCCcchhhhcccccccCCCCEEEEEEEecc
Q 003980 672 HVVIGVKNNGPMSGSHVVLIFWKPPSAST-----AGAPNVELVGFERVDVQKGKTKNVTVGFDV 730 (782)
Q Consensus 672 ~v~v~VtNtG~~~G~eVvQlY~~~~~~~~-----~~~p~k~L~gF~kv~L~pGes~~V~~~l~~ 730 (782)
.++++|+|+++.. -.||..+.+..... +..|. ..|+||+.+++.|-...
T Consensus 45 ~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPl--------fRlep~~~~~lRI~~~~ 98 (237)
T PRK15224 45 GATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPL--------FRLEANQQSQLRIVRTG 98 (237)
T ss_pred EEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCe--------EEECCCCceEEEEEECC
Confidence 4688889999764 99999998754330 12222 24899999999987653
No 80
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=25.87 E-value=2.3e+02 Score=27.35 Aligned_cols=64 Identities=22% Similarity=0.320 Sum_probs=34.2
Q ss_pred CcEEEEccCCCcccccccCCCcCCCCcCCHHHHHhhccc------ceeecCCCCCCc--c-CCCcchHHHHHHhhcCCeE
Q 003980 415 QNLAVIGPNANATNVMISNYAGIPCGYTSPLQGLQKYVS------AVTYAPGCSNVK--C-KDDSLIEPAAKAAAAADVV 485 (782)
Q Consensus 415 ~kIaviG~~a~~~~~~~G~~~g~~~~~~t~l~gl~~~~~------~v~y~~G~~~~~--~-~~~~~~~~a~~~a~~aD~v 485 (782)
|||.+||+... .-+|+.+.|..... .+.|...+-+.+ . .+..........+.+||+|
T Consensus 2 krimliG~~g~--------------GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V 67 (143)
T PF10662_consen 2 KRIMLIGPSGS--------------GKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVV 67 (143)
T ss_pred ceEEEECCCCC--------------CHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence 68999997422 12456677754321 244443321111 0 0112234455678899999
Q ss_pred EEEEccC
Q 003980 486 VVVVGLD 492 (782)
Q Consensus 486 Iv~vG~~ 492 (782)
+++...+
T Consensus 68 ~ll~dat 74 (143)
T PF10662_consen 68 LLLQDAT 74 (143)
T ss_pred EEEecCC
Confidence 9887543
No 81
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=25.66 E-value=50 Score=36.08 Aligned_cols=58 Identities=24% Similarity=0.422 Sum_probs=34.2
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCC--hhHHHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLP--GYQEKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp--~~q~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..+.||+||++.|... +.|-+|.+|--- .-..++.+++.+.+++ .+++ ..+||+++.
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d-~ivl-VvtNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAPD-AIVL-VVTNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCCC-eEEE-EecCcHHHH
Confidence 45688999999998653 455566543211 1124555666655444 4433 346899874
No 82
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=25.35 E-value=63 Score=35.34 Aligned_cols=56 Identities=29% Similarity=0.495 Sum_probs=32.3
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCChhH---HHHHHHHHHhcCCcEEEEEecCCeeee
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQ---EKLVMEVANATKGTVILVVMAAGPVDI 538 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q---~~Li~~va~~~~~pvVvVl~~g~P~~l 538 (782)
+..+++|+||++.|... .+|.+|.++ |+.+- ++..+++.+..++ .+ +++..||+++
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl-l~~N~~I~~~i~~~i~~~~p~-~i-iivvsNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL-FNVNAGIVKDLVAAVAESCPK-AM-ILVITNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH-HHHhHHHHHHHHHHHHHhCCC-eE-EEEecCchhh
Confidence 46789999999998643 345566543 12111 2344555554444 34 3445689984
No 83
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=25.13 E-value=1.4e+02 Score=27.95 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=14.5
Q ss_pred HHHHHHhhcCCeEEEEEc
Q 003980 473 EPAAKAAAAADVVVVVVG 490 (782)
Q Consensus 473 ~~a~~~a~~aD~vIv~vG 490 (782)
.++.+.++++|++++++-
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456778899999998874
No 84
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=24.37 E-value=4e+02 Score=28.83 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCceeeeeecccccc
Q 003980 177 VSKYAVNYVRGLQEIGDSKNSSSDRLKVSSCCKHYTAY 214 (782)
Q Consensus 177 ~~~~a~a~v~GlQ~~~~g~~~~~~~~~v~a~~KHF~g~ 214 (782)
++.+...||+-++.. + ..-+|.+|=|.+||.
T Consensus 106 IAT~T~~~V~~~~~~--~-----~~~~I~~TRKT~Pg~ 136 (284)
T PRK06096 106 VSDYLAQMLALLRER--Y-----PDGNIACTRKAIPGT 136 (284)
T ss_pred HHHHHHHHHHHHHhh--C-----CCcEEEecCcCCCch
Confidence 578888999999864 2 234699999999985
No 85
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=24.35 E-value=4.7e+02 Score=22.69 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=47.5
Q ss_pred CceEEEEEEEEeCC---CCCcceEEEEEEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEEeccCCCceEEeCCCCEE
Q 003980 668 DLHFHVVIGVKNNG---PMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRK 744 (782)
Q Consensus 668 ~~~~~v~v~VtNtG---~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~ 744 (782)
++++.+++-+.+.. ...-..-+.+.|.+|... ++.-.........-.-..+|.|+. +
T Consensus 14 GetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~-------~v~~~~~~~~~~~G~~~~~~~lp~-~------------ 73 (99)
T PF01835_consen 14 GETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGN-------EVFRWSVNTTNENGIFSGSFQLPD-D------------ 73 (99)
T ss_dssp TSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSE-------EEEEEEEEETTCTTEEEEEEE--S-S------------
T ss_pred CCEEEEEEEEeccccccccccCCceEEEEECCCCC-------EEEEEEeeeeCCCCEEEEEEECCC-C------------
Confidence 46788888877664 344557777999998654 111111113456667777788886 3
Q ss_pred EeCeEEEEEEeCCCcccceeEEEEEE
Q 003980 745 LVIGLHTLIVGSPSERQVRHHLNVRL 770 (782)
Q Consensus 745 ~e~G~y~i~vG~ss~~~~~~~~~~~~ 770 (782)
...|.|+|.+-.........+.+|.|
T Consensus 74 ~~~G~y~i~~~~~~~~~~~~~~~F~V 99 (99)
T PF01835_consen 74 APLGTYTIRVKTDDDGGQSFSKTFQV 99 (99)
T ss_dssp ---EEEEEEEEETTTTCEEEEEEEEE
T ss_pred CCCEeEEEEEEEccCCCCEEEEEEEC
Confidence 25789998887643223444555554
No 86
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=24.29 E-value=53 Score=36.12 Aligned_cols=57 Identities=19% Similarity=0.319 Sum_probs=31.7
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCChhH----HHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQ----EKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..+++|+||++.|... .++.+|.++ =... +++++++.+..++..|+++ .+||+++.
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~l--l~~N~~i~k~i~~~i~~~~~~~~iiiv-vsNPvDv~ 131 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDL--LSKNVKIFKEQGRALDKLAKKDCKVLV-VGNPANTN 131 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEE-eCCcHHHH
Confidence 46788999999888642 234445332 1222 3445555554223355444 45899873
No 87
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.21 E-value=53 Score=35.89 Aligned_cols=55 Identities=31% Similarity=0.514 Sum_probs=32.1
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCChhH----HHHHHHHHHhcCCcEEEEEecCCeeee
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQ----EKLVMEVANATKGTVILVVMAAGPVDI 538 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~~pvVvVl~~g~P~~l 538 (782)
+..+++|+||++.|... .+|.+|.+| =..- .+.++++.+.+++ .+ |++..||+++
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~p~-a~-vivvtNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDL--FNINAGIVRDLATAVAKACPK-AL-ILIISNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-eE-EEEccCchhh
Confidence 46789999999998643 244455433 1222 3344555554443 34 3445689976
No 88
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=24.06 E-value=2.3e+02 Score=24.64 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=42.2
Q ss_pred ceEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEEeccCCCceEEeC
Q 003980 669 LHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDT 739 (782)
Q Consensus 669 ~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~ 739 (782)
..+.+.+++.|.+.....-.+++.+...... .... .-..+.+..++...+.+++.. +....|+.
T Consensus 18 ~~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 18 AKVSVEVEVRNESNKPLDVTVRVRLFDPEGK-KVVT-----QSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEEESSSSCEEEEEEEEEETTSE-EEEE-----EEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEEeCCCCcEEEEEEEEEECCCCC-EEEE-----eeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 4577777789999999999999999887665 1111 122344666777666555555 34677876
No 89
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=23.86 E-value=52 Score=25.46 Aligned_cols=21 Identities=14% Similarity=0.293 Sum_probs=10.0
Q ss_pred CCchhhHHHHHHHHHHHhhcc
Q 003980 1 MKPQYHLSLCLAIFLLLTTQC 21 (782)
Q Consensus 1 m~~~~~~~~~l~~~l~~~~~~ 21 (782)
|||.+.+++.++++++.+++|
T Consensus 2 mKk~i~~i~~~l~~~~~l~~C 22 (48)
T PRK10081 2 VKKTIAAIFSVLVLSTVLTAC 22 (48)
T ss_pred hHHHHHHHHHHHHHHHHHhhh
Confidence 666654444444444334444
No 90
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=23.55 E-value=59 Score=35.79 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=31.4
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCChhH--HHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQ--EKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q--~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..+++|+||++.|... .++.+|.++.-.... .++++++.+..+...++++. +||+++.
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 134 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANTN 134 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHHH
Confidence 45679999999988642 234455332111111 34445555443323454444 5799763
No 91
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=23.53 E-value=6.8e+02 Score=26.55 Aligned_cols=19 Identities=26% Similarity=0.386 Sum_probs=12.5
Q ss_pred hhhhcCcCcEEEcCchhhh
Q 003980 279 VRDQWGLDGYIVSDCDSIQ 297 (782)
Q Consensus 279 LR~e~Gf~G~VvSD~~~~~ 297 (782)
|=++.||+.+.+.|+.+|.
T Consensus 27 l~e~aG~d~i~vGds~~~~ 45 (254)
T cd06557 27 LADEAGVDVILVGDSLGMV 45 (254)
T ss_pred HHHHcCCCEEEECHHHHHH
Confidence 3456677777777776654
No 92
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=23.28 E-value=59 Score=33.66 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=40.9
Q ss_pred HHHHHHcCCcceEEeeccccCCccc-cCCHHHHHHHhhhhcCcCcEEEcCchhh
Q 003980 244 FKSCVQEGHVSSVMCSYNRVNGIPT-CADPNLLKGVVRDQWGLDGYIVSDCDSI 296 (782)
Q Consensus 244 F~~ai~~g~~~~vM~sy~~vng~pa-~~s~~ll~~iLR~e~Gf~G~VvSD~~~~ 296 (782)
|+.|++... .+||++||.-.|.|. +.....+|.-|.+-..+-|+.+=|-.-+
T Consensus 158 ~k~Al~~nA-aavIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIi 210 (224)
T COG2003 158 FKEALKYNA-AAVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHIII 210 (224)
T ss_pred HHHHHHhcc-hhhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEe
Confidence 678998874 599999999988554 3455667888999999999888776543
No 93
>PLN02602 lactate dehydrogenase
Probab=23.15 E-value=50 Score=36.77 Aligned_cols=58 Identities=29% Similarity=0.441 Sum_probs=32.4
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCChh--HHHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGY--QEKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~--q~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..++||+||++.|... .+|.+|.++-.-.. =+++++++.+.+++ .++++ ..||+++.
T Consensus 101 ~~~~daDiVVitAG~~~---k~g~tR~dll~~N~~I~~~i~~~I~~~~p~-~iviv-vtNPvdv~ 160 (350)
T PLN02602 101 AVTAGSDLCIVTAGARQ---IPGESRLNLLQRNVALFRKIIPELAKYSPD-TILLI-VSNPVDVL 160 (350)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEE-ecCchHHH
Confidence 34789999999988643 34556644321111 12445555554444 44433 45899773
No 94
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=22.71 E-value=4.9e+02 Score=22.27 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=37.9
Q ss_pred eEEEEEEEEeC------CCCCcceEEEEEEeCCCCCCCCCcchhhhccccc-ccCCCCEEEEEEEeccCCCceEEeCCCC
Q 003980 670 HFHVVIGVKNN------GPMSGSHVVLIFWKPPSASTAGAPNVELVGFERV-DVQKGKTKNVTVGFDVCQGLNLVDTDGQ 742 (782)
Q Consensus 670 ~~~v~v~VtNt------G~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~ 742 (782)
.+.+++.+-+. ....-..-+++|+...... . .+.-+.+- .|.|||+..|.|.+.. .+. .+..+.
T Consensus 5 ~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~-----~-~i~~l~~~~~i~~g~~~~v~l~l~~--pv~-~~~~~r 75 (90)
T cd03707 5 KFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVT-----G-SITLPEGTEMVMPGDNVKMTVELIH--PIA-LEKGLR 75 (90)
T ss_pred EEEEEEEEEcccccCCCCcccCCceeEEEeccCeEE-----E-EEEccCcccccCCCCEEEEEEEECC--cEE-EecCCE
Confidence 46666666654 3344455666776654321 0 11222233 4899999999999985 353 233344
Q ss_pred EEE
Q 003980 743 RKL 745 (782)
Q Consensus 743 ~~~ 745 (782)
+++
T Consensus 76 f~l 78 (90)
T cd03707 76 FAI 78 (90)
T ss_pred EEE
Confidence 444
No 95
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=22.57 E-value=48 Score=36.02 Aligned_cols=56 Identities=34% Similarity=0.443 Sum_probs=32.7
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCChhH----HHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQ----EKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..++||+||++.|... .+|.+|.++ =..- +++++++.+.++ ..+ |++.+||+++.
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dl--l~~N~~i~~~~~~~i~~~~p-~~~-vivvsNP~d~~ 119 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLEL--VGRNVRIMKSIVPEVVKSGF-DGI-FLVATNPVDIL 119 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CeE-EEEeCCHHHHH
Confidence 46789999999988643 345566433 1112 345555655433 344 44556899763
No 96
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=22.52 E-value=2.6e+02 Score=23.91 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHhhccC
Q 003980 5 YHLSLCLAIFLLLTTQCT 22 (782)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~ 22 (782)
+++.++|++++++++|-+
T Consensus 6 LrltivlGLlvLIltC~A 23 (88)
T PF15144_consen 6 LRLTIVLGLLVLILTCHA 23 (88)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 455666766666666543
No 97
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=22.36 E-value=56 Score=35.59 Aligned_cols=54 Identities=26% Similarity=0.498 Sum_probs=30.0
Q ss_pred hhcCCeEEEEEccCCcccccCCCCCCCCCChhHHH----HHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 479 AAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQEK----LVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 479 a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~----Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
.+++|++|+++|.... ++.+|.+ |=....+ .++++.+..++ .++ ++..||+++.
T Consensus 67 ~~~aDiVIitag~p~~---~~~sR~~--l~~~N~~iv~~i~~~I~~~~p~-~~i-Iv~tNP~di~ 124 (305)
T TIGR01763 67 TANSDIVVITAGLPRK---PGMSRED--LLSMNAGIVREVTGRIMEHSPN-PII-VVVSNPLDAM 124 (305)
T ss_pred hCCCCEEEEcCCCCCC---cCCCHHH--HHHHHHHHHHHHHHHHHHHCCC-eEE-EEecCcHHHH
Confidence 5789999999997532 2334432 2222333 44455554444 333 3346799874
No 98
>PRK05086 malate dehydrogenase; Provisional
Probab=22.35 E-value=65 Score=35.21 Aligned_cols=56 Identities=29% Similarity=0.458 Sum_probs=32.4
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCCh---hHHHHHHHHHHhcCCcEEEEEecCCeeee
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLPG---YQEKLVMEVANATKGTVILVVMAAGPVDI 538 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~---~q~~Li~~va~~~~~pvVvVl~~g~P~~l 538 (782)
+..+++|+||++.|... .++.+|.++ |.. --.++++++.+.+.+. + |++..||+|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dl-l~~N~~i~~~ii~~i~~~~~~~-i-vivvsNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDL-FNVNAGIVKNLVEKVAKTCPKA-C-IGIITNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHhCCCe-E-EEEccCchHH
Confidence 45578999999999743 233345432 111 2345666676554443 3 3445689964
No 99
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=22.31 E-value=4.7e+02 Score=30.44 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=51.9
Q ss_pred CceEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhcccccccCCCCEEEEEEEeccCCCceEEeCCCCEEEeC
Q 003980 668 DLHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERVDVQKGKTKNVTVGFDVCQGLNLVDTDGQRKLVI 747 (782)
Q Consensus 668 ~~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~ 747 (782)
++.+++.++|+-+|++ -|.+||-+...+ .+++.+..|.-+. +.|+|.|+. +++
T Consensus 326 dG~~~i~ftv~a~g~~----~vta~V~d~~g~--------~~~~~~~~v~d~s-~~vtL~Ls~--------------~~A 378 (478)
T PRK13211 326 DGAATLDFTVTATGDM----NVEATVYNHDGE--------ALGSKSQTVNDGS-QSVSLDLSK--------------LKA 378 (478)
T ss_pred CCcEEEEEEEEeccce----EEEEEEEcCCCC--------eeeeeeEEecCCc-eeEEEeccc--------------CCC
Confidence 4578899999988744 677777666553 6778888887765 888888886 278
Q ss_pred eEEEEEEeC-CCcccc--eeEEEEEEe
Q 003980 748 GLHTLIVGS-PSERQV--RHHLNVRLA 771 (782)
Q Consensus 748 G~y~i~vG~-ss~~~~--~~~~~~~~~ 771 (782)
|.|.|.|-. .+.... ..+.+|.|.
T Consensus 379 G~y~Lvv~~t~~dG~~~~q~~~~~~v~ 405 (478)
T PRK13211 379 GHHMLVVKAKPKDGELIKQQTLDFMLE 405 (478)
T ss_pred ceEEEEEEEEeCCCceeeeeeEEEEEE
Confidence 998887653 221112 344566664
No 100
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=22.21 E-value=74 Score=34.70 Aligned_cols=58 Identities=24% Similarity=0.460 Sum_probs=30.6
Q ss_pred HHhhcCCeEEEEEccCCcccccCCCCCCCCCC--hhHHHHHHHHHHhcCCcEEEEEecCCeeeec
Q 003980 477 KAAAAADVVVVVVGLDQSIEAEGLDRENLTLP--GYQEKLVMEVANATKGTVILVVMAAGPVDIS 539 (782)
Q Consensus 477 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp--~~q~~Li~~va~~~~~pvVvVl~~g~P~~l~ 539 (782)
+..+++|++|+++|... .++.+|.++-.- .--.+.++++.+.+++ .++++ .++|+++.
T Consensus 68 ~~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~-~~viv-~~npvd~~ 127 (309)
T cd05294 68 SDVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEFAPD-TKILV-VTNPVDVM 127 (309)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEE-eCCchHHH
Confidence 34789999999998743 344455332100 0112344445444444 33333 35898763
No 101
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=22.21 E-value=2.3e+02 Score=23.81 Aligned_cols=42 Identities=31% Similarity=0.390 Sum_probs=20.9
Q ss_pred HhCCCCCCCCC-CCCCCCCCCCCCcHHHHHHHHHHHhhceEeccCCCCCCC
Q 003980 360 RLGFFDGDPKS-QPLGNLGPSDVCTDDHKSLALDAARQGIVLLGNNGALPL 409 (782)
Q Consensus 360 ~~Glf~~~p~~-~~~~~~~~~~~~~~~h~~la~~~A~esiVLLKN~~~LPL 409 (782)
+-|.|++.|.. -|.. ........+....+++++ |||.++||-
T Consensus 11 ~~GeFdnLpG~GKPL~-~~~~~~~~~~~~~~~~~i-------Lk~~g~lPp 53 (71)
T PF09350_consen 11 ARGEFDNLPGAGKPLP-LDDDNPYWPAEERMANRI-------LKNAGYLPP 53 (71)
T ss_pred HcCCccCCCCCCCCCC-CCCCCcCCCHHHHHHHHh-------hcccCCCCH
Confidence 33999965521 1221 111111233444455554 788888884
No 102
>COG5510 Predicted small secreted protein [Function unknown]
Probab=21.92 E-value=70 Score=24.19 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=9.5
Q ss_pred CCchhhHHHHHHHHHHHhhcc
Q 003980 1 MKPQYHLSLCLAIFLLLTTQC 21 (782)
Q Consensus 1 m~~~~~~~~~l~~~l~~~~~~ 21 (782)
||+++.+++.++++.++.++|
T Consensus 2 mk~t~l~i~~vll~s~llaaC 22 (44)
T COG5510 2 MKKTILLIALVLLASTLLAAC 22 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 777644433333333333344
No 103
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=21.49 E-value=44 Score=26.89 Aligned_cols=12 Identities=42% Similarity=0.257 Sum_probs=8.7
Q ss_pred EeCeEEEEEEeC
Q 003980 745 LVIGLHTLIVGS 756 (782)
Q Consensus 745 ~e~G~y~i~vG~ 756 (782)
++||+|+|.|-.
T Consensus 36 L~~G~Y~l~V~a 47 (66)
T PF07495_consen 36 LPPGKYTLEVRA 47 (66)
T ss_dssp --SEEEEEEEEE
T ss_pred CCCEEEEEEEEE
Confidence 589999999864
No 104
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.46 E-value=1.8e+02 Score=25.63 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=28.7
Q ss_pred HHHHhhcCCeEEEEEccCCcccccCCCCCCCCCChhHHHHHHHHHHhcCCcEEEE
Q 003980 475 AAKAAAAADVVVVVVGLDQSIEAEGLDRENLTLPGYQEKLVMEVANATKGTVILV 529 (782)
Q Consensus 475 a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~~pvVvV 529 (782)
..+..+++|+||++++.-+ ..-...+++.++..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~vs---------------H~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVS---------------HNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCcC---------------hHHHHHHHHHHHHcCCcEEEE
Confidence 3456789999999986421 344567888888888997653
No 105
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=21.32 E-value=3.1e+02 Score=29.64 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=37.4
Q ss_pred ceEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhccccc----ccCCCCEEEEEEEeccCC
Q 003980 669 LHFHVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFERV----DVQKGKTKNVTVGFDVCQ 732 (782)
Q Consensus 669 ~~~~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~kv----~L~pGes~~V~~~l~~~~ 732 (782)
..+.+-|.++|.|+ ..+.=.++...-.- ...-..-+++|..+ .++||+..++.-.+.+++
T Consensus 99 ~~~~~LvgftN~g~---~~~~V~~i~aSl~~-p~d~~~~iqNfTa~~y~~~V~pg~~aT~~YsF~~~~ 162 (285)
T PF03896_consen 99 EPVKFLVGFTNKGS---EPFTVESIEASLRY-PQDYSYYIQNFTAVRYNREVPPGEEATFPYSFTPSE 162 (285)
T ss_pred CeEEEEEEEEeCCC---CCEEEEEEeeeecC-ccccceEEEeecccccCcccCCCCeEEEEEEEecch
Confidence 46788999999997 23322333332111 12223446666665 379999999998887633
No 106
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=20.95 E-value=2.7e+02 Score=29.40 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=34.7
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCC-----CCCcchhhhcccccccCCCCEEEEEEEecc
Q 003980 672 HVVIGVKNNGPMSGSHVVLIFWKPPSAST-----AGAPNVELVGFERVDVQKGKTKNVTVGFDV 730 (782)
Q Consensus 672 ~v~v~VtNtG~~~G~eVvQlY~~~~~~~~-----~~~p~k~L~gF~kv~L~pGes~~V~~~l~~ 730 (782)
.++++|+|+++.. -.||..+.+..... +..|. ..|+||+.++|.|....
T Consensus 57 ~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPL--------fRLep~~~~~lRIi~~~ 110 (246)
T PRK15233 57 STSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPI--------LKVESNARTRLKVIPTS 110 (246)
T ss_pred EEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCe--------EEECCCCceEEEEEECC
Confidence 4678889998664 89999998654320 12222 25899999999997753
No 107
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=20.80 E-value=1.9e+02 Score=30.03 Aligned_cols=55 Identities=7% Similarity=0.119 Sum_probs=33.5
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCCCcchhhhcccc-cccCCCCEEEEEEEec
Q 003980 672 HVVIGVKNNGPMSGSHVVLIFWKPPSASTAGAPNVELVGFER-VDVQKGKTKNVTVGFD 729 (782)
Q Consensus 672 ~v~v~VtNtG~~~G~eVvQlY~~~~~~~~~~~p~k~L~gF~k-v~L~pGes~~V~~~l~ 729 (782)
.++++|+|+|+. .-.||..+.+.... ...+...+.-.=- ..|+||+++.+.|-..
T Consensus 39 ~~sl~l~N~~~~--p~lvQsWv~~~~~~-~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 94 (227)
T PRK15299 39 DASISISNSDNV--PYLIQSWAQSISET-GASGDAPFMVTPPLFRLNGGQKNVLRIIRT 94 (227)
T ss_pred EEEEEEEeCCCC--cEEEEEEeecCCCC-CCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence 578889999975 68999998763211 0011001111111 3488999999987654
No 108
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=20.02 E-value=1.1e+02 Score=27.80 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=28.5
Q ss_pred ceEEEEEEEEeCCCCCcce-EEEEEEeCCCCCCCCCcchhh----hcccccccCCCCEEEEEEEecc
Q 003980 669 LHFHVVIGVKNNGPMSGSH-VVLIFWKPPSASTAGAPNVEL----VGFERVDVQKGKTKNVTVGFDV 730 (782)
Q Consensus 669 ~~~~v~v~VtNtG~~~G~e-VvQlY~~~~~~~~~~~p~k~L----~gF~kv~L~pGes~~V~~~l~~ 730 (782)
.-+.|+|+|+|+|+-+-.- ..+..+.+.... .-.+.... ..+.-..|+||++.+..+-+..
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~-~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGN-KYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT---B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCC-EEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 4689999999998644321 113334343332 11222111 1144567999999987765554
Done!