BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003981
(782 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 245 bits (626), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 189/624 (30%), Positives = 299/624 (47%), Gaps = 62/624 (9%)
Query: 166 LWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-----EPLWKLLSKV 220
L L + RL +V L + ++S P F G+ +V I P + L +L +
Sbjct: 10 LLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDV-IYTNPTVDYSDNLTRLCLGL 68
Query: 221 GLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVXXXXXXXXXX 280
++ I V M T +++++ ++ +F +L Q+ FFD+ +
Sbjct: 69 SAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSD 128
Query: 281 XXXXKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIXXXXXXXXXXXXXXYKRST 340
V+EN+S G RA ++ I ++F ++P LA Y R
Sbjct: 129 TALLGRSVTENLSD--GLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL 186
Query: 341 VPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQV-----LAYQQSGIKL 395
+ K + A E +RTVR+FG E ++ + +V LA +++ +
Sbjct: 187 RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARA 246
Query: 396 GTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNT 455
G F + T ++ + +L++ GG + + ++VG ++SF+ Y F + ++ GL +
Sbjct: 247 GFFGA-----TGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF 301
Query: 456 FGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHL 515
+ +L A R+ +L ER + K +E + L N K
Sbjct: 302 YSELMKGLGAGGRLWELL-------------ER--EPKLPFNEGVIL------NEK---- 336
Query: 516 NMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSS 575
++ G + ++V+F+YP RP+V I +L++ SGSVTALVG S
Sbjct: 337 -----------------SFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPS 379
Query: 576 GAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635
G+GKST++ LL R Y+P G I++ G D+R + + V+QEP+LFS S+ ENIA
Sbjct: 380 GSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIA 439
Query: 636 YGLPD-ENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALL 694
YG D +V+ + PQG++T IAIARALL
Sbjct: 440 YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 499
Query: 695 KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRI 754
KN IL+LDEATSALDA +E LVQ+AL+ LM GRT LVIAHRLST++NA+ +A+ G+I
Sbjct: 500 KNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKI 559
Query: 755 AELGTHFELLAR-KGQYASLVCTQ 777
E G H ELL++ G Y L+ Q
Sbjct: 560 TEYGKHEELLSKPNGIYRKLMNKQ 583
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 188/624 (30%), Positives = 298/624 (47%), Gaps = 62/624 (9%)
Query: 166 LWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-----EPLWKLLSKV 220
L L + RL +V L + ++S P F G+ +V I P + L +L +
Sbjct: 41 LLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDV-IYTNPTVDYSDNLTRLCLGL 99
Query: 221 GLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVXXXXXXXXXX 280
++ I V M T +++++ ++ +F +L Q+ FFD+ +
Sbjct: 100 SAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSD 159
Query: 281 XXXXKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIXXXXXXXXXXXXXXYKRST 340
V+EN+S G RA ++ I ++F ++P LA Y R
Sbjct: 160 TALLGRSVTENLSD--GLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL 217
Query: 341 VPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQV-----LAYQQSGIKL 395
+ K + A E +RTVR+FG E ++ + +V LA +++ +
Sbjct: 218 RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARA 277
Query: 396 GTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNT 455
G F + T ++ + +L++ GG + + ++VG ++SF+ Y F + ++ GL +
Sbjct: 278 GFFGA-----TGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF 332
Query: 456 FGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHL 515
+ +L A R+ +L ER + K +E + L N K
Sbjct: 333 YSELMKGLGAGGRLWELL-------------ER--EPKLPFNEGVIL------NEK---- 367
Query: 516 NMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSS 575
++ G + ++V+F+YP RP+V I +L++ SGSVTALVG S
Sbjct: 368 -----------------SFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPS 410
Query: 576 GAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635
G+GKST++ LL R Y+P G I++ G D+R + + V+QEP+LFS S+ ENIA
Sbjct: 411 GSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIA 470
Query: 636 YGLPD-ENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALL 694
YG D +V+ + PQG++T IAIARALL
Sbjct: 471 YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 530
Query: 695 KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRI 754
KN IL+LDEATSALDA +E LVQ+AL+ LM GRT LVIAH LST++NA+ +A+ G+I
Sbjct: 531 KNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKI 590
Query: 755 AELGTHFELLAR-KGQYASLVCTQ 777
E G H ELL++ G Y L+ Q
Sbjct: 591 TEYGKHEELLSKPNGIYRKLMNKQ 614
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 151/431 (35%), Positives = 212/431 (49%), Gaps = 50/431 (11%)
Query: 350 AQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIA 409
A A E +AIRTV +FGG+K+++ + + ++ GIK +++ +
Sbjct: 242 AYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLL 301
Query: 410 IYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGL---VNTFGDLRGTFAAV 466
IY S + G S V + E S+G V + F+V + F + RG AA
Sbjct: 302 IYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARG--AAY 359
Query: 467 ERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSA 526
E I + ID +G + D NI+
Sbjct: 360 EVFKIIDNKPSIDSFSKSGHKPD---------NIQ------------------------- 385
Query: 527 NSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLL 586
G++ ++++FSYP R +V IL GLNL +KSG ALVG+SG GKST VQL+
Sbjct: 386 ---------GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 587 ARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXX 646
R Y+P G +++ G+D+RT + ++ +V+QEPVLF+ ++ ENI YG E+V+
Sbjct: 437 QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG--REDVTMD 494
Query: 647 XXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEAT 706
LP +DT IAIARAL++N IL+LDEAT
Sbjct: 495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554
Query: 707 SALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766
SALD SE +VQ AL+ +GRTT+VIAHRLSTV+NA IA G I E G H EL+
Sbjct: 555 SALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614
Query: 767 KGQYASLVCTQ 777
KG Y LV TQ
Sbjct: 615 KGIYFKLVMTQ 625
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 149/244 (61%), Gaps = 2/244 (0%)
Query: 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594
G++ V F+YP RP + +L GL+L +K G ALVGSSG GKST+VQLL RFY+P
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087
Query: 595 GRITVGGEDLRTFDKSEWARV-VSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXX 653
G + + G++++ + +W R + IV+QEP+LF S+ ENIAYG VS
Sbjct: 1088 GSVFLDGKEIKQLN-VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 654 XXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVS 713
SLP Y+T IAIARAL++ IL+LDEATSALD S
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 714 ERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASL 773
E++VQ+AL+ +GRT +VIAHRLST+QNA I + +G++ E GTH +LLA+KG Y S+
Sbjct: 1207 EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSM 1266
Query: 774 VCTQ 777
V Q
Sbjct: 1267 VSVQ 1270
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 151/431 (35%), Positives = 212/431 (49%), Gaps = 50/431 (11%)
Query: 350 AQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIA 409
A A E +AIRTV +FGG+K+++ + + ++ GIK +++ +
Sbjct: 242 AYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLL 301
Query: 410 IYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGL---VNTFGDLRGTFAAV 466
IY S + G S V + E S+G V + F+V + F + RG AA
Sbjct: 302 IYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARG--AAY 359
Query: 467 ERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSA 526
E I + ID +G + D NI+
Sbjct: 360 EVFKIIDNKPSIDSFSKSGHKPD---------NIQ------------------------- 385
Query: 527 NSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLL 586
G++ ++++FSYP R +V IL GLNL +KSG ALVG+SG GKST VQL+
Sbjct: 386 ---------GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 587 ARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXX 646
R Y+P G +++ G+D+RT + ++ +V+QEPVLF+ ++ ENI YG E+V+
Sbjct: 437 QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG--REDVTMD 494
Query: 647 XXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEAT 706
LP +DT IAIARAL++N IL+LDEAT
Sbjct: 495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554
Query: 707 SALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766
SALD SE +VQ AL+ +GRTT+VIAHRLSTV+NA IA G I E G H EL+
Sbjct: 555 SALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614
Query: 767 KGQYASLVCTQ 777
KG Y LV TQ
Sbjct: 615 KGIYFKLVMTQ 625
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 149/244 (61%), Gaps = 2/244 (0%)
Query: 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594
G++ V F+YP RP + +L GL+L +K G ALVGSSG GKST+VQLL RFY+P
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087
Query: 595 GRITVGGEDLRTFDKSEWARV-VSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXX 653
G + + G++++ + +W R + IV+QEP+LF S+ ENIAYG VS
Sbjct: 1088 GSVFLDGKEIKQLN-VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 654 XXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVS 713
SLP Y+T IAIARAL++ IL+LDEATSALD S
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 714 ERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASL 773
E++VQ+AL+ +GRT +VIAHRLST+QNA I + +G++ E GTH +LLA+KG Y S+
Sbjct: 1207 EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSM 1266
Query: 774 VCTQ 777
V Q
Sbjct: 1267 VSVQ 1270
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 148/439 (33%), Positives = 220/439 (50%), Gaps = 64/439 (14%)
Query: 349 LAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRI 408
L A V ET S+IRTV S G + ++ + V +++G+ G F ++ +
Sbjct: 269 LRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQA 328
Query: 409 AIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVER 468
+ +IS + +G V G L+ FGD+ TF++V
Sbjct: 329 SNFISFALAFYIGVGWVHDGSLN------------------------FGDMLTTFSSVMM 364
Query: 469 IN----------SILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMH 518
+ ++L T + A+G+ + +K V D S+ K +M
Sbjct: 365 GSMALGLAGPQLAVLGTAQ---GAASGIYEVLDRKPVID----------SSSKAGRKDMK 411
Query: 519 YMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAG 578
GDI +E+V+F+YP RPDV IL G+NL + +G ALVGSSG G
Sbjct: 412 I---------------KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCG 456
Query: 579 KSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638
KSTI+ LL R+Y+ G+IT+ G D+R + + V++V+QEP LF+ ++ ENI+ G
Sbjct: 457 KSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG- 515
Query: 639 PDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAP 698
E ++ +LP GY+T IAIARAL++N
Sbjct: 516 -KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK 574
Query: 699 ILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELG 758
IL+LDEATSALDA SE +VQ AL+ KGRTT++IAHRLST++NA I C +G++ E+G
Sbjct: 575 ILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVG 634
Query: 759 THFELLARKGQYASLVCTQ 777
H L+A++G Y LV Q
Sbjct: 635 DHRALMAQQGLYYDLVTAQ 653
Score = 202 bits (514), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 146/242 (60%)
Query: 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
G + ++V F+YP RP++ IL GL+ +++ G ALVG SG GKST+V LL RFY+ GG
Sbjct: 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXX 655
I + G +++T + ++IV+QEP LF S+ ENI YGL +V+
Sbjct: 1135 EIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLA 1194
Query: 656 XXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER 715
LP+G++T IAIARAL++N IL+LDEATSALD SE+
Sbjct: 1195 NIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEK 1254
Query: 716 LVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVC 775
+VQ+AL+ +GRT +VIAHRL+TV NA IA+ S+G I E GTH +L++ KG Y L
Sbjct: 1255 VVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQ 1314
Query: 776 TQ 777
Q
Sbjct: 1315 KQ 1316
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 14/142 (9%)
Query: 135 PIVSEPDPRI-NDSVSPSEKVHSPPNLITWGLLWSLFLK--HKLRL--GLSVLTLIGCTT 189
P++ E + RI D++S ++ N L L+ H L L G+S T+ G
Sbjct: 709 PVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIY 768
Query: 190 CTLSMPIFSGRFFEVLIGARPEPL-----WKLLSKVGLLYALEPIFTVIFVMNMNTVWEK 244
T S +F F V G + L W L+ V L A + I + + M E
Sbjct: 769 PTYS--VFFTSFMNVFAGNPADFLSQGHFWALMFLV--LAAAQGICSFLMTFFMGIASES 824
Query: 245 VMSIVKAQIFRRVLIQKAEFFD 266
+ ++ ++FR VL Q FFD
Sbjct: 825 LTRDLRNKLFRNVLSQHIGFFD 846
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 158/597 (26%), Positives = 259/597 (43%), Gaps = 68/597 (11%)
Query: 184 LIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWE 243
LIG T + +P R F++L P + L+ +G +YAL + + M T+ +
Sbjct: 59 LIGKTIDVVFVP----RRFDLL------PRYMLI--LGTIYALTSLLFWLQGKIMLTLSQ 106
Query: 244 KVMSIVKAQIFRRVLIQKAEFFDRYKVXXXXXXXXXXXXXXKALVSENISRDRGFRALSE 303
V+ ++ ++F ++ FFDR ++ +I + F +
Sbjct: 107 DVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQ--FFSGIVT 164
Query: 304 VIGTICILFNIAPQLAPIXXXXXXXXXXXXXXYKRSTVPVFKAHGLAQASIADCVTETFS 363
+ G + ++F + L+ + T F + + + E S
Sbjct: 165 LAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDIS 224
Query: 364 AIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGS 423
+ ++ F E+++M F R + ++ G K F + L + + + GG
Sbjct: 225 GLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGW 284
Query: 424 KVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALA 483
++VG +A+FIGY+ T + L N F ++ A+ ERI IL E
Sbjct: 285 LALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE------ 338
Query: 484 NGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDV 543
E+D ++V G+I ++V
Sbjct: 339 ---EKD-----------------------------------DPDAVELREVRGEIEFKNV 360
Query: 544 YFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED 603
+FSY + V L + +K G ALVG +G+GK+TIV LL RFY+ G+I V G D
Sbjct: 361 WFSYDKKKPV--LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418
Query: 604 LRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP---DENVSXXXXXXXXXXXXXXXX 660
+R +S + IV Q+ +LFS +V EN+ YG P DE +
Sbjct: 419 IRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIK--- 475
Query: 661 XXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDA 720
LP+GY+T +AI RA L N ILILDEATS +D +E+ +Q A
Sbjct: 476 --HLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAA 533
Query: 721 LNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQ 777
+ LM+G+T+++IAHRL+T++NA I + DG I E+G H EL+ ++G Y L +Q
Sbjct: 534 MWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 186 bits (473), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 205/433 (47%), Gaps = 52/433 (12%)
Query: 350 AQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIA 409
A A + + E I V+SF E + F ++ + +K + + + +
Sbjct: 195 ALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTV 254
Query: 410 IYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERI 469
I + + +G +G ++VG +A+F+GY L ++ LV +F L +FA+++R+
Sbjct: 255 TDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRV 314
Query: 470 NSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSV 529
++ ED +IK +G + +
Sbjct: 315 FQLID---------------------EDYDIK----NGVGAQPIEIK------------- 336
Query: 530 CSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF 589
G I ++ V F Y + IL +NL+++ G A VG SG GKST++ L+ RF
Sbjct: 337 -----QGRIDIDHVSFQYN-DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 390
Query: 590 YEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP---DENVSXX 646
Y+ T G+I + G +++ F + +V Q+ +LFS +V ENI G P DE V
Sbjct: 391 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV--- 447
Query: 647 XXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEAT 706
+LPQGYDT ++IAR L N PILILDEAT
Sbjct: 448 --VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEAT 505
Query: 707 SALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766
SALD SE ++Q+AL+ L K RTTL++AHRLST+ +A +I + +G I E GTH EL+A+
Sbjct: 506 SALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565
Query: 767 KGQYASLVCTQRL 779
+G Y L Q L
Sbjct: 566 QGAYEHLYSIQNL 578
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 137/239 (57%), Gaps = 2/239 (0%)
Query: 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594
+GD+ +V F+YP R +V L +NL + +G ALVG SG+GKSTI L+ RFY+
Sbjct: 339 TGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 595 GRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXX 654
G I + G DLR + + V++V+Q LF+ +V NIAY +E S
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEE-YSREQIEEAARM 456
Query: 655 XXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSE 714
+ G DT IAIARALL+++PILILDEATSALD SE
Sbjct: 457 AYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 715 RLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASL 773
R +Q AL+ L K RT+LVIAHRLST++ A +I + DG I E GTH ELLA+ G YA L
Sbjct: 517 RAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 135/239 (56%), Gaps = 2/239 (0%)
Query: 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594
+GD+ +V F+YP R DV L +NL + +G ALVG SG+GKSTI L+ RFY+
Sbjct: 339 TGDVEFRNVTFTYPGR-DVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 595 GRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXX 654
G I + G DLR + + V++V+Q LF+ +V NIAY E S
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART-EQYSREQIEEAARM 456
Query: 655 XXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSE 714
+ G DT IAIARALL+++PILILDEATSALD SE
Sbjct: 457 AYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 715 RLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASL 773
R +Q AL+ L K RT+LVIAHRLST++ A +I + DG I E GTH +LL +G YA L
Sbjct: 517 RAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQL 575
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 129/475 (27%), Positives = 214/475 (45%), Gaps = 47/475 (9%)
Query: 299 RALSEVIGTICILFNIAPQLAPIXXXXXXXXXXXXXXYKRSTVPVFKAHGLAQASIADCV 358
R + +IG + ++F + QL+ + + + + A +
Sbjct: 148 REGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSA 207
Query: 359 TETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALY 418
+ + V S+GG++ + F + + +Q +KL + +S+ + + ++ ++L A+
Sbjct: 208 EQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVL 267
Query: 419 CLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEI 478
L EL+ G F L ++ L + + + AA + + ++
Sbjct: 268 FLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET- 326
Query: 479 DDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDI 538
ERD NGK++ A V +G++
Sbjct: 327 --------ERD-------------------NGKYE------------AERV-----NGEV 342
Query: 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRIT 598
++DV F+Y + L+ ++ ++ G ALVG SG+GKSTI L RFY+ G I
Sbjct: 343 DVKDVTFTYQGKEKPA-LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401
Query: 599 VGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXX 658
+ G D+R + + R ++V+Q LF+ ++ NIAY E +
Sbjct: 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGE-YTREQIEQAARQAHAM 460
Query: 659 XXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQ 718
++PQG DT +AIARALL++AP+LILDEATSALD SER +Q
Sbjct: 461 EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQ 520
Query: 719 DALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASL 773
AL+ L K +T LVIAHRLST++ A +I + +G I E G H +LLA+ G YA L
Sbjct: 521 AALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 133/251 (52%), Gaps = 3/251 (1%)
Query: 526 ANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQL 585
+ S+ G + +DV F+YP P+V +L GL TL G VTALVG +G+GKST+ L
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 586 LARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSX 645
L Y+PTGG++ + GE L +D V+ V QEP+LF S ENIAYGL +
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTM 123
Query: 646 XXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEA 705
PQGYDT +A+ARAL++ +LILD+A
Sbjct: 124 EEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQA 183
Query: 706 TSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFEL 763
TSALDA ++ VQ L + RT L+I H+LS + AH I +G + E GTH +L
Sbjct: 184 TSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQL 243
Query: 764 LARKGQYASLV 774
+ R G Y S+V
Sbjct: 244 MERGGCYRSMV 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 134/242 (55%), Gaps = 3/242 (1%)
Query: 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594
G + +DV F+YP RPDV++L GL TL+ G VTALVG +G+GKST+ LL Y+PTG
Sbjct: 12 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 71
Query: 595 GRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXX 654
G++ + G+ L ++ R V+ V QEP +F S+ ENIAYGL + +
Sbjct: 72 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGL-TQKPTMEEITAAAVK 130
Query: 655 XXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSE 714
LPQGYDT +A+ARAL++ +LILD+ATSALDA S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 715 RLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYAS 772
V+ L + R+ L+I LS V+ A I G I E GTH +L+ +KG Y +
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 250
Query: 773 LV 774
+V
Sbjct: 251 MV 252
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 131/251 (52%), Gaps = 3/251 (1%)
Query: 526 ANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQL 585
+ S+ G + +DV F+YP P+V +L GL TL G VTALVG +G+GKST+ L
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 586 LARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSX 645
L Y+PTGG++ + GE L +D V+ V QEP+LF S ENIAYGL +
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTM 123
Query: 646 XXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEA 705
PQGYDT +A+ARAL++ +LILD A
Sbjct: 124 EEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNA 183
Query: 706 TSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFEL 763
TSALDA ++ VQ L + RT L+I +LS + AH I +G + E GTH +L
Sbjct: 184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL 243
Query: 764 LARKGQYASLV 774
+ R G Y S+V
Sbjct: 244 MERGGCYRSMV 254
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 165 bits (418), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 131/251 (52%), Gaps = 3/251 (1%)
Query: 526 ANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQL 585
+ S+ G + +DV F+YP P+V +L GL TL G VTALVG +G+GKST+ L
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 586 LARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSX 645
L Y+PTGG++ + GE L +D V+ V QEP+LF S ENIAYGL +
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTM 123
Query: 646 XXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEA 705
PQGYDT +A+ARAL++ +LILD A
Sbjct: 124 EEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNA 183
Query: 706 TSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFEL 763
TSALDA ++ VQ L + RT L+I +LS + AH I +G + E GTH +L
Sbjct: 184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL 243
Query: 764 LARKGQYASLV 774
+ R G Y S+V
Sbjct: 244 MERGGCYRSMV 254
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 135/241 (56%), Gaps = 3/241 (1%)
Query: 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR 596
+I DV FSYP + + L +N + SG+ ALVG +G+GKSTI +LL RFY+ G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGD- 75
Query: 597 ITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXX 656
I +GG+++ ++++ ++ IV Q+ +LF+ ++ NI YG D +
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD--ATDEEVIKATKSAQ 133
Query: 657 XXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERL 716
+LP+ +DT IAIAR LLK+ I+I DEATS+LD+ +E L
Sbjct: 134 LYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL 193
Query: 717 VQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCT 776
Q A+ L K RT ++IAHRLST+ +A I L + G+I E GTH +LL G+YA +
Sbjct: 194 FQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNM 253
Query: 777 Q 777
Q
Sbjct: 254 Q 254
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 129/230 (56%), Gaps = 5/230 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG SG+GKST+ +L+ RFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXX 655
++ + G DL D + R V +V Q+ VL + S+ +NI+ P +S
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLA 116
Query: 656 XXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER 715
L +GY+T IAIARAL+ N ILI DEATSALD SE
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 716 LVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLA 765
++ ++ + KGRT ++IAHRLSTV+NA +I + G+I E G H ELL+
Sbjct: 177 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 129/230 (56%), Gaps = 5/230 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG SG+GKST+ +L+ RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXX 655
++ + G DL D + R V +V Q+ VL + S+ +NI+ P +S
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLA 122
Query: 656 XXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER 715
L +GY+T IAIARAL+ N ILI DEATSALD SE
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 716 LVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLA 765
++ ++ + KGRT ++IAHRLSTV+NA +I + G+I E G H ELL+
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 129/230 (56%), Gaps = 5/230 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG SG+GKST+ +L+ RFY P G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXX 655
++ + G DL D + R V +V Q+ VL + S+ +NI+ P +S
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLA 118
Query: 656 XXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER 715
L +GY+T IAIARAL+ N ILI DEATSALD SE
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 716 LVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLA 765
++ ++ + KGRT ++IAHRLSTV+NA +I + G+I E G H ELL+
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 129/230 (56%), Gaps = 5/230 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG +G+GKST+ +L+ RFY P G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXX 655
++ + G DL D + R V +V Q+ VL + S+ +NI+ P +S
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLA 118
Query: 656 XXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER 715
L +GY+T IAIARAL+ N ILI DEATSALD SE
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 716 LVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLA 765
++ ++ + KGRT ++IAHRLSTV+NA +I + G+I E G H ELL+
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 129/230 (56%), Gaps = 5/230 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG SG+GKST+ +L+ RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXX 655
++ + G DL D + R V +V Q+ VL + S+ +NI+ P +S
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLA 122
Query: 656 XXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER 715
L +GY+T IAIARAL+ N ILI D+ATSALD SE
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEH 182
Query: 716 LVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLA 765
++ ++ + KGRT ++IAHRLSTV+NA +I + G+I E G H ELL+
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 128/230 (55%), Gaps = 5/230 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG SG+GKST+ +L+ RFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXX 655
++ + G DL D + R V +V Q+ VL + S+ +NI+ P +S
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLA 116
Query: 656 XXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER 715
L +GY+T IAIARAL+ N ILI DEATSALD SE
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 716 LVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLA 765
++ ++ + KGRT ++IA RLSTV+NA +I + G+I E G H ELL+
Sbjct: 177 VIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 128/230 (55%), Gaps = 5/230 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG SG+GKST+ +L+ RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXX 655
++ + G DL D + R V +V Q+ VL + S+ +NI+ P +S
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLA 122
Query: 656 XXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER 715
L +GY+T IAIARAL+ N ILI DEATSALD SE
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 716 LVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLA 765
++ ++ + KGRT ++IA RLSTV+NA +I + G+I E G H ELL+
Sbjct: 183 VIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 138/272 (50%), Gaps = 12/272 (4%)
Query: 510 GKHQHLNMHYM-SHLKSANSVCSFAWSG-------DICLEDVYFSYPLRPDVVILNGLNL 561
G H ++M M LK V +G I E+V+FSY + L ++
Sbjct: 18 GSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRET--LQDVSF 75
Query: 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQ 621
T+ G ALVG SGAGKSTI++LL RFY+ + G I + G+D+ ++ + +V Q
Sbjct: 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQ 135
Query: 622 EPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXX 681
+ VLF+ ++ +NI YG + P+GY T
Sbjct: 136 DTVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193
Query: 682 XXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ 741
+AIAR +LK I++LDEATSALD +ER +Q +L + RTT+V+AHRLSTV
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253
Query: 742 NAHQIALCSDGRIAELGTHFELLARKGQYASL 773
NA QI + DG I E G H LL+R G YA +
Sbjct: 254 NADQILVIKDGCIVERGRHEALLSRGGVYADM 285
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 119/223 (53%), Gaps = 1/223 (0%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
IL ++ + S+ A G SG GKSTI LL RFY+PT G IT+ G+ + W
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXX 674
+ V+Q+ + + ++ EN+ YGL + + + ++P +T
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGL-EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE 135
Query: 675 XXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIA 734
+AIARA L+N IL+LDEAT++LD+ SE +VQ AL+ LMKGRTTLVIA
Sbjct: 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195
Query: 735 HRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQ 777
HRLST+ +A +I G+I G H EL+A YA V Q
Sbjct: 196 HRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 112/440 (25%), Positives = 197/440 (44%), Gaps = 54/440 (12%)
Query: 342 PVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSL 401
P+F+ + + V E +R VR+F E+ + F + + ++S I +
Sbjct: 189 PLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVF 248
Query: 402 NESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRG 461
L + + ++A+ GG V+ ++ +G + ++ Y + F++ + N +
Sbjct: 249 ALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVR 308
Query: 462 TFAAVERINSILSTT----EIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNM 517
A+ +R+ +L+ E D+ALA +VE
Sbjct: 309 ASASAKRVLEVLNEKPAIEEADNALA--------LPNVE--------------------- 339
Query: 518 HYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGA 577
G + E+V F Y D V L+G+N ++K GS+ A++G +G+
Sbjct: 340 ------------------GSVSFENVEFRYFENTDPV-LSGVNFSVKPGSLVAVLGETGS 380
Query: 578 GKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYG 637
GKST++ L+ R +P GR+ V D+RT + +S V QE VLFS ++ EN+ +G
Sbjct: 381 GKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWG 440
Query: 638 LPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNA 697
E+ + SLP+GYD+ ++IARAL+K
Sbjct: 441 --REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498
Query: 698 PILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAEL 757
+LILD+ TS++D ++E+ + D L KG TT +I ++ T A +I + +G++A
Sbjct: 499 KVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGF 558
Query: 758 GTHFELLARKGQYASLVCTQ 777
GTH ELL Y + +Q
Sbjct: 559 GTHKELLEHCKPYREIYESQ 578
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 23/217 (10%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
LN +NL +K G AL+G SG+GKST++ +A Y+PT G+I +D+ + R
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RN 76
Query: 616 VSIVNQEPVLF-SVSVGENIAYGL-----PDENVSXXXXXXXXXXXXXXXXXXSLPQGYD 669
V +V Q L+ ++V +NIA+ L P E + D
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI------------D 124
Query: 670 TXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--G 727
+AIARAL+K +L+LDE S LDA+ V+ L L K G
Sbjct: 125 KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG 184
Query: 728 RTTLVIAH-RLSTVQNAHQIALCSDGRIAELGTHFEL 763
TT+ + H + + A +IA+ +G I ++GT E+
Sbjct: 185 ITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 20/242 (8%)
Query: 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
I + + F++ R D LNG+ ++ G++ A+VG G GKS+++ L + G +
Sbjct: 4 ITVRNATFTWA-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 598 TVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXX 657
+ G V+ V Q+ + + S+ ENI +G E
Sbjct: 63 AIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 658 XXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDA-VSERL 716
LP G T +++ARA+ NA I + D+ SA+DA V + +
Sbjct: 110 LEI---LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 717 VQDAL--NHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLV 774
++ + ++K +T +++ H +S + I + S G+I+E+G++ ELLAR G +A +
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226
Query: 775 CT 776
T
Sbjct: 227 RT 228
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 14/217 (6%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWA-- 613
LN ++L + +G + ++G+SGAGKST+++ + PT G + V G++L T +SE
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 614 -RVVSIVNQE-PVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTX 671
R + ++ Q +L S +V N+A L +N Y +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS- 139
Query: 672 XXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRT 729
+AIARAL N +L+ DEATSALD + R + + L + + G T
Sbjct: 140 ------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT 193
Query: 730 TLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765
L+I H + V+ +A+ S+G + E T E+ +
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 14/217 (6%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWA-- 613
LN ++L + +G + ++G+SGAGKST+++ + PT G + V G++L T +SE
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 614 -RVVSIVNQE-PVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTX 671
R + ++ Q +L S +V N+A L +N Y +
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS- 162
Query: 672 XXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRT 729
+AIARAL N +L+ D+ATSALD + R + + L + + G T
Sbjct: 163 ------NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 730 TLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765
L+I H + V+ +A+ S+G + E T E+ +
Sbjct: 217 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 13/212 (6%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
++G++ +K G AL+G SG GK+T + +LA Y+PT G I +D+ D R
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF--DDVLVNDIPPKYRE 76
Query: 616 VSIVNQEPVLFS-VSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXX 674
V +V Q L+ ++V ENIA+ L +S D
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI-------DNLLDR 129
Query: 675 XXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLV 732
+A+ARAL+K +L+ DE S LDA +++ + HL + G T++
Sbjct: 130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY 189
Query: 733 IAH-RLSTVQNAHQIALCSDGRIAELGTHFEL 763
+ H + + A +IA+ + G++ + GT E+
Sbjct: 190 VTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 14/217 (6%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR- 614
LN ++L + +G + ++G+SGAGKST+++ + PT G + V G++L T +SE +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 615 ---VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTX 671
+ I +L S +V N+A L +N Y +
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS- 162
Query: 672 XXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRT 729
+AIARAL N +L+ D+ATSALD + R + + L + + G T
Sbjct: 163 ------NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 730 TLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765
L+I H V+ +A+ S+G + E T E+ +
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFS 253
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 108/225 (48%), Gaps = 18/225 (8%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
L+ L+L ++SG ++G +GAGK+ ++L+A F+ P GRI + G+D+ D S
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV--TDLSPEKHD 73
Query: 616 VSIVNQEPVLF-SVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXX 674
++ V Q LF ++V +N+ +G+ + + +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK----------IEHLLDR 123
Query: 675 XXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGR--TTLV 732
+A+ARAL+ N IL+LDE SALD ++ ++ L+ L K T L
Sbjct: 124 NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183
Query: 733 IAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLAR--KGQYASLV 774
I H + + A +IA+ DG++ ++G E+ + +G+ AS V
Sbjct: 184 ITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFV 228
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 13/215 (6%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
+N LNLT+K G L+G SG GK+T ++++A EPT GRI G D+ + R
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RN 85
Query: 616 VSIVNQEPVLF-SVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXX 674
+S+V Q ++ ++V ENIA+ L + L Y
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA---- 141
Query: 675 XXXXXXXXXXXXIAIARALLKNAPILILDEATSALDA---VSERLVQDALNHLMKGRTTL 731
+A+ARA++ +L++DE S LDA V+ R L +K T
Sbjct: 142 ---QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 198
Query: 732 VIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766
V ++ + +IA+ + G++ ++G+ E+ R
Sbjct: 199 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 233
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 13/215 (6%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
+N LNLT+K G L+G SG GK+T ++++A EPT GRI G D+ + R
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RN 84
Query: 616 VSIVNQEPVLF-SVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXX 674
+S+V Q ++ ++V ENIA+ L + L Y
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA---- 140
Query: 675 XXXXXXXXXXXXIAIARALLKNAPILILDEATSALDA---VSERLVQDALNHLMKGRTTL 731
+A+ARA++ +L++DE S LDA V+ R L +K T
Sbjct: 141 ---QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 197
Query: 732 VIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766
V ++ + +IA+ + G++ ++G+ E+ R
Sbjct: 198 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 13/217 (5%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
+ G++ ++ G + L+G SG+GK+TI++L+A PT G + +GG+ R D R
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK--RVTDLPPQKRN 88
Query: 616 VSIVNQEPVLFS-VSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXX 674
V +V Q LF ++V +N+++GL ++ V S +
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRF------ 142
Query: 675 XXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALN--HLMKGRTTLV 732
+A+ARAL +L+ DE +A+D R ++ + H G T++
Sbjct: 143 -PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201
Query: 733 IAH-RLSTVQNAHQIALCSDGRIAELGTHFELLARKG 768
+ H + ++ A ++ + +G + + GT E+ + G
Sbjct: 202 VTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 30/227 (13%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS----- 610
L G+N+ +K G VTA++G +G GKST+ Q +P+ GRI D + D S
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF---DNKPIDYSRKGIM 80
Query: 611 EWARVVSIVNQEP--VLFSVSVGENIAYG-----LPDENVSXXXXXXXXXXXXXXXXXXS 663
+ + IV Q+P LFS SV +++++G LP++ +
Sbjct: 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRT--------- 131
Query: 664 LPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNH 723
G + +AIA L+ +LILDE T+ LD + + L
Sbjct: 132 ---GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188
Query: 724 LMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLARK 767
+ K G T ++ H + V + + +GR+ G E+ A K
Sbjct: 189 MQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 9/214 (4%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
IL G++ ++ G + L+G +GAGK+T +++++ +P+ G +TV G+++ + E +
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV-VEEPHEVRK 88
Query: 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXX 674
++S + +E + N+ G+ + G
Sbjct: 89 LISYLPEEAGAY-----RNMQ-GIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD 142
Query: 675 XXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHL-MKGRTTLVI 733
+ IARAL+ N + ILDE TS LD ++ R V+ L +G T LV
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 734 AHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766
+H + V+ +IAL +G I E GT EL R
Sbjct: 203 SHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 13/216 (6%)
Query: 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
+VV+ +NL + G VG SG GKST+++++A T G + +G + R D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPP 72
Query: 612 WARVVSIVNQEPVLF-SVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDT 670
R V +V Q L+ +SV EN+++GL ++ L D
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGL---KLAGAKKEVINQRVNQVAEVLQLAHLLDR 129
Query: 671 XXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GR 728
+AI R L+ + +LDE S LDA ++ ++ L K GR
Sbjct: 130 ----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 729 TTLVIAH-RLSTVQNAHQIALCSDGRIAELGTHFEL 763
T + + H ++ + A +I + GR+A++G EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 13/216 (6%)
Query: 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
+VV+ +NL + G VG SG GKST+++++A T G + +G + R D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPP 72
Query: 612 WARVVSIVNQEPVLF-SVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDT 670
R V +V Q L+ +SV EN+++GL ++ L D
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGL---KLAGAKKEVINQRVNQVAEVLQLAHLLDR 129
Query: 671 XXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GR 728
+AI R L+ + +LDE S LDA ++ ++ L K GR
Sbjct: 130 ----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 729 TTLVIAH-RLSTVQNAHQIALCSDGRIAELGTHFEL 763
T + + H ++ + A +I + GR+A++G EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 13/216 (6%)
Query: 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
+VV+ +NL + G VG SG GKST+++++A T G + +G + R D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPP 72
Query: 612 WARVVSIVNQEPVLF-SVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDT 670
R V +V Q L+ +SV EN+++GL ++ L D
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGL---KLAGAKKEVINQRVNQVAEVLQLAHLLDR 129
Query: 671 XXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GR 728
+AI R L+ + +LD+ S LDA ++ ++ L K GR
Sbjct: 130 ----KPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 729 TTLVIAH-RLSTVQNAHQIALCSDGRIAELGTHFEL 763
T + + H ++ + A +I + GR+A++G EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 538 ICLEDVYFSYPLRPDVVI-LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR 596
I L++V +Y + +++ L +NL +K G +++G SG+GKST++ ++ +PT G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 597 ITVGGEDLRTFDKSEWARV----VSIVNQE----PVLFSVSVGENIAYGLPDENVSXXXX 648
+ + D E ++ + V Q+ P+L ++ EN+ L +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTAL---ENVELPLIFKYRGAMSG 118
Query: 649 XXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSA 708
L + + +AIARAL N PI++ D+ T A
Sbjct: 119 EERRKRALECLKMAELEERF---ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGA 175
Query: 709 LDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRI 754
LD+ + + L L + G+T +V+ H ++ + +I DG +
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 17/217 (7%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE--- 611
+LN ++L+L G + ++G+SG GK+T+++ LA F +P G I++ G+ + F K+
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI--FSKNTNLP 76
Query: 612 -WARVVSIVNQEPVLF-SVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYD 669
R + + QE VLF ++V NIAYGL + L Y
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRY- 135
Query: 670 TXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--G 727
A+ARAL + +++LDE SALD R +++ + ++ G
Sbjct: 136 ------PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANG 189
Query: 728 RTTLVIAH-RLSTVQNAHQIALCSDGRIAELGTHFEL 763
++ + ++H R +Q A +IA+ GRI + + EL
Sbjct: 190 KSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 51/226 (22%), Positives = 98/226 (43%), Gaps = 17/226 (7%)
Query: 540 LEDVYFSYPLRPDVVI-LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRIT 598
L++V +Y + +++ L +NL +K G +++G SG+GKST++ ++ +PT G +
Sbjct: 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY 63
Query: 599 VGGEDLRTFDKSEWARV----VSIVNQE----PVLFSVSVGENIAYGLPDENVSXXXXXX 650
+ D E ++ + V Q+ P+L ++ EN+ L +
Sbjct: 64 IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTAL---ENVELPLIFKYRGAMSGEE 120
Query: 651 XXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALD 710
L + + +AIARAL N PI++ D+ T ALD
Sbjct: 121 RRKRALECLKMAELEERF---ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177
Query: 711 AVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRI 754
+ + + L L + G+T +V+ H ++ + +I DG +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 17/228 (7%)
Query: 538 ICLEDVYFSYPLRPDVVI-LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR 596
I L++V +Y +++ L +NL +K G ++ G SG+GKST + ++ +PT G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 597 ITVGGEDLRTFDKSEWARV----VSIVNQE----PVLFSVSVGENIAYGLPDENVSXXXX 648
+ + D E ++ + V Q+ P+L ++ EN+ L +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTAL---ENVELPLIFKYRGAXSG 118
Query: 649 XXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSA 708
L + + +AIARAL N PI++ DE T A
Sbjct: 119 EERRKRALECLKXAELEERF---ANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGA 175
Query: 709 LDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRI 754
LD+ + + L L + G+T +V+ H ++ + +I DG +
Sbjct: 176 LDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 85/209 (40%), Gaps = 4/209 (1%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
IL ++ ++ G L+G +G+GKST++ R T G I + G + +W +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXX 674
++ Q+ +FS + +N+ P+ S P D
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLD---PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151
Query: 675 XXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIA 734
+ +AR++L A IL+LDE ++ LD V+ ++++ L T ++
Sbjct: 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCE 211
Query: 735 HRLSTVQNAHQIALCSDGRIAELGTHFEL 763
R+ + Q + + ++ + + EL
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQYDSILEL 240
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 17/227 (7%)
Query: 559 LNLTLKSG-SVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617
LN+ + G L+G +GAGKS ++L+A +P G + + G D+ R +
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER--RGIG 73
Query: 618 IVNQEPVLFS-VSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXX 676
V Q+ LF +SV NIAYGL + G
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL---------GIAHLLDRKP 124
Query: 677 XXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIA 734
+A+ARAL+ +L+LDE SA+D ++ ++ + L + + L +
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 735 HRL-STVQNAHQIALCSDGRIAELGTHFELL-ARKGQYASLVCTQRL 779
H L A ++A+ +GRI E G EL A+ G+ A + + L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNL 231
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 27/222 (12%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
L ++L + G + G++G+GKST++Q++A EPT G + GE + + E R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79
Query: 616 VSIVNQEP--VLFSVSVGENIAYGL----PDENVSXXXXXXXXXXXXXXXXXXSLPQGYD 669
+ I Q P F+ V + +A+ + PD + + +D
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD----------PVPLVKKAMEFVGLDFD 129
Query: 670 TXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--- 726
+ +AIA ++ ILILDE LD + D L + K
Sbjct: 130 SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK---TDLLRIVEKWKT 186
Query: 727 -GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766
G+T ++I+H + TV N ++ + G+ GT E L +
Sbjct: 187 LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 27/222 (12%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
L ++L + G + G++G+GKST++Q++A EPT G + GE + + E R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 81
Query: 616 VSIVNQEP--VLFSVSVGENIAYGL----PDENVSXXXXXXXXXXXXXXXXXXSLPQGYD 669
+ I Q P F+ V + +A+ + PD + + +D
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD----------PVPLVKKAMEFVGLDFD 131
Query: 670 TXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--- 726
+ +AIA ++ ILILDE LD + D L + K
Sbjct: 132 SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK---TDLLRIVEKWKT 188
Query: 727 -GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766
G+T ++I+H + TV N ++ + G+ GT E L +
Sbjct: 189 LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV 599
LE + Y ++ +I N ++L + SG + A++G +GAGKST+++LL + P+ G +
Sbjct: 12 LEASHLHYHVQQQALI-NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70
Query: 600 GGEDLRTFDKSEWARVVSIVNQEPVL-FSVSVGENIAYG 637
G++L ++ AR +++ Q L F SV E I G
Sbjct: 71 LGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMG 109
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 17/208 (8%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
IL G++L++K G +++G+SG+GKST++ +L PT G++ + G+++ ++ E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKE--- 75
Query: 615 VVSIVNQEPVLFSVSVGENIAYGLPD----ENVSXXXXXXXXXXXXXXXXXXSLPQ--GY 668
+S++ + F Y +P+ ENV L G
Sbjct: 76 -LSLLRNRKLGFVF----QFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGL 130
Query: 669 DTXXXXXXXXXXXXXXXXIAIARALLKNAPILIL-DEATSALDAVSERLVQDALNHLMKG 727
+AIARA L N PIL+ DE T LD+ + + V D + +G
Sbjct: 131 GDKLSRKPYELSGGEQQRVAIARA-LANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189
Query: 728 RTTLV-IAHRLSTVQNAHQIALCSDGRI 754
T++V + H + H+ DG++
Sbjct: 190 GTSIVMVTHERELAELTHRTLEMKDGKV 217
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 18/241 (7%)
Query: 538 ICLEDVYFSYPLRPDVV-ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG-- 594
I +ED+ Y +R + +G++L + SVTA+VG S +GKSTI++ + + P G
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 595 --GRITVGGEDLRTFDKSE-----WARV--VSIVNQEPVLFSVSVGENIAYGLPDENVSX 645
GR+ G+DL T + E W + V Q+ + ++ V E+ + V
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRW 124
Query: 646 XXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEA 705
P+ + IA ALL + +LILDE
Sbjct: 125 SHSELIEKASEKLRMVRLNPEA---VLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEP 181
Query: 706 TSALDAVSE-RLVQDALNHLMKGRTTLV-IAHRLSTVQN-AHQIALCSDGRIAELGTHFE 762
TSALD +++ ++Q + TL+ + H ++ A ++A+ G + E + F+
Sbjct: 182 TSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQ 241
Query: 763 L 763
+
Sbjct: 242 I 242
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 25/204 (12%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---W 612
L+G+++++ G VT ++G +G+GKST++ ++ F + GR+ +D+ + +E +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 613 ARVVSIVNQEPVLFSVSVGENIAYG--LPDENVSXXX--------XXXXXXXXXXXXXXX 662
V + +P L ++V EN+ G P E+
Sbjct: 83 GIVRTFQTPQP-LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 663 SLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALN 722
L YD + I RAL+ N ++++DE + V+ L D N
Sbjct: 142 KLSHLYD----RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIA---GVAPGLAHDIFN 194
Query: 723 HLM----KGRTTLVIAHRLSTVQN 742
H++ KG T L+I HRL V N
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLN 218
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 615 VVSIVNQEPVLFSVSVGENIAYGLP-DE----NVSXXXXXXXXXXXXXXXXXXSLPQGYD 669
+S +Q + ++ ENI +G+ DE +V L +G
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 129
Query: 670 TXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER-LVQDALNHLMKGR 728
T I++ARA+ K+A + +LD LD ++E+ + + + LM +
Sbjct: 130 T--------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 181
Query: 729 TTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFEL 763
T +++ ++ ++ A +I + +G GT EL
Sbjct: 182 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 90/210 (42%), Gaps = 17/210 (8%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXX 674
+S +Q + ++ ENI +G+ + + +
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIFGV---SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 675 XXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER-LVQDALNHLMKGRTTLVI 733
I++ARA+ K+A + +LD LD ++E+ + + + LM +T +++
Sbjct: 157 GGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 734 AHRLSTVQNAHQIALCSDGRIAELGTHFEL 763
++ ++ A +I + +G GT EL
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 25/204 (12%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---W 612
L+G+++++ G VT ++G +G+GKST++ ++ F + GR+ +D+ + +E +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 613 ARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXX----------XXXXXXXXXXXXX 662
V + +P L ++V EN+ G + S
Sbjct: 83 GIVRTFQTPQP-LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 663 SLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALN 722
L YD + I RAL+ N ++++DE + V+ L D N
Sbjct: 142 KLSHLYD----RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIA---GVAPGLAHDIFN 194
Query: 723 HLM----KGRTTLVIAHRLSTVQN 742
H++ KG T L+I HRL V N
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLN 218
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 82
Query: 615 VVSIVNQEPVLFSVSVGENIAYGLP-DE----NVSXXXXXXXXXXXXXXXXXXSLPQGYD 669
+S +Q + ++ ENI +G+ DE +V L +G
Sbjct: 83 -ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 141
Query: 670 TXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER-LVQDALNHLMKGR 728
T I++ARA+ K+A + +LD LD ++E+ + + + LM +
Sbjct: 142 T--------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 193
Query: 729 TTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFEL 763
T +++ ++ ++ A +I + +G GT EL
Sbjct: 194 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 25/204 (12%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---W 612
L+G+++++ G VT ++G +G+GKST++ ++ F + GR+ +D+ + +E +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 613 ARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXX----------XXXXXXXXXXXXX 662
V + +P L ++V EN+ G + S
Sbjct: 83 GIVRTFQTPQP-LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 663 SLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALN 722
L YD + I RAL+ N ++++D+ + V+ L D N
Sbjct: 142 KLSHLYD----RKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIA---GVAPGLAHDIFN 194
Query: 723 HLM----KGRTTLVIAHRLSTVQN 742
H++ KG T L+I HRL V N
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLN 218
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 98/233 (42%), Gaps = 19/233 (8%)
Query: 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+V FS+ +L +NL ++ G + A+ GS+G+GK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 602 EDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP-DENVSXXXXXXXXXXXXXXXX 660
VS +Q + ++ ENI +G+ DE
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFGVSYDE----YRYKSVVKACQLQQD 142
Query: 661 XXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLV-QD 719
+ +T I++ARA+ K+A + +LD LD +E V +
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 720 ALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYAS 772
+ LM +T +++ ++ ++ A +I + G GT EL + + ++S
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 255
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 98/233 (42%), Gaps = 19/233 (8%)
Query: 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+V FS+ +L +NL ++ G + A+ GS+G+GK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 602 EDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP-DENVSXXXXXXXXXXXXXXXX 660
VS +Q + ++ ENI +G+ DE
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFGVSYDE----YRYKSVVKACQLQQD 142
Query: 661 XXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLV-QD 719
+ +T I++ARA+ K+A + +LD LD +E V +
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 720 ALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYAS 772
+ LM +T +++ ++ ++ A +I + G GT EL + + ++S
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 255
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 19/222 (8%)
Query: 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
DV + L+L +K G L+G SG GK+T ++ +A EPT G+I + ED D +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYI--EDNLVADPEK 75
Query: 612 WA------RVVSIVNQEPVLF-SVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSL 664
R V+ V Q L+ +V +NIA+ L V L
Sbjct: 76 GVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTEL 135
Query: 665 PQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHL 724
+A+ RA+++ + + DE S LDA + L L
Sbjct: 136 -------LNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKL 188
Query: 725 MK--GRTTLVIAH-RLSTVQNAHQIALCSDGRIAELGTHFEL 763
+ G TT+ + H ++ +IA+ + G + ++GT E+
Sbjct: 189 QRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 18/219 (8%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXX 674
+S +Q + ++ ENI DE + +
Sbjct: 101 -ISFCSQNSWIMPGTIKENIIGVSYDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE 155
Query: 675 XXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER-LVQDALNHLMKGRTTLVI 733
I++ARA+ K+A + +LD LD ++E+ + + + LM +T +++
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 215
Query: 734 AHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYAS 772
++ ++ A +I + +G GT EL + ++S
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSS 254
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 89/210 (42%), Gaps = 17/210 (8%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXX 674
+S +Q + ++ ENI G+ + + +
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIAGV---SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 675 XXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER-LVQDALNHLMKGRTTLVI 733
I++ARA+ K+A + +LD LD ++E+ + + + LM +T +++
Sbjct: 157 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 734 AHRLSTVQNAHQIALCSDGRIAELGTHFEL 763
++ ++ A +I + +G GT EL
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 18/219 (8%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXX 674
+S +Q + ++ ENI DE + +
Sbjct: 101 -ISFCSQNSWIMPGTIKENIIGVSYDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE 155
Query: 675 XXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER-LVQDALNHLMKGRTTLVI 733
I++ARA+ K+A + +LD LD ++E+ + + + LM +T +++
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 215
Query: 734 AHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYAS 772
++ ++ A +I + +G GT EL + ++S
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSS 254
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 15/220 (6%)
Query: 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
+V + ++L +K G L+G SG GK+T ++++A EP+ G+I +G + + +K
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 612 WA----RVVSIVNQEPVLF-SVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQ 666
+ R +++V Q L+ ++V +NIA+ L V
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL------- 127
Query: 667 GYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK 726
G +A+ RA+++ + ++DE S LDA ++ L L +
Sbjct: 128 GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 727 --GRTTLVIAH-RLSTVQNAHQIALCSDGRIAELGTHFEL 763
G TT+ + H ++ + +IA+ + G + ++G+ E+
Sbjct: 188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 55/223 (24%), Positives = 84/223 (37%), Gaps = 23/223 (10%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD------ 608
+L G+N+ ++ G V ++G SG+GKST ++ L + G I + G +L+ D
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 609 KSEWARVVSIVNQEP---VLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLP 665
+ E V N P VL ++++ P E
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV----------- 126
Query: 666 QGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM 725
G +AIARAL I++ DE TSALD V + L
Sbjct: 127 -GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 185
Query: 726 -KGRTTLVIAHRLSTVQNAHQIALCSD-GRIAELGTHFELLAR 766
+G T +V+ H + + L D G I E G +L R
Sbjct: 186 NEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 84/223 (37%), Gaps = 23/223 (10%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD------ 608
+L G+N+ ++ G V ++G SG+GKST ++ L + G I + G +L+ D
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 609 KSEWARVVSIVNQEP---VLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLP 665
+ E V N P VL ++++ P E
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV----------- 147
Query: 666 QGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM 725
G +AIARAL I++ DE TSALD V + L
Sbjct: 148 -GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206
Query: 726 -KGRTTLVIAHRLSTVQNAHQIALCSD-GRIAELGTHFELLAR 766
+G T +V+ H + + L D G I E G +L R
Sbjct: 207 NEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 26/214 (12%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 615 VVSIVNQEPVLFSVSVGENIAYGLPDE----NVSXXXXXXXXXXXXXXXXXXSLPQGYDT 670
+S +Q + ++ ENI DE +V L +G T
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 159
Query: 671 XXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER-LVQDALNHLMKGRT 729
I++ARA+ K+A + +LD LD ++E+ + + + LM +T
Sbjct: 160 LSEGQQAK--------ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 730 TLVIAHRLSTVQNAHQIALCSDGRIAELGTHFEL 763
+++ ++ ++ A +I + +G GT EL
Sbjct: 212 RILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 19/233 (8%)
Query: 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+V FS+ +L +NL ++ G + A+ GS+G+GK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 602 EDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP-DENVSXXXXXXXXXXXXXXXX 660
VS +Q + ++ ENI G+ DE
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIRGVSYDE----YRYKSVVKACQLQQD 142
Query: 661 XXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLV-QD 719
+ +T I++ARA+ K+A + +LD LD +E V +
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 720 ALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYAS 772
+ LM +T +++ ++ ++ A +I + G GT EL + + ++S
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 255
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 26/214 (12%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 615 VVSIVNQEPVLFSVSVGENIAYGLPDE----NVSXXXXXXXXXXXXXXXXXXSLPQGYDT 670
+S +Q + ++ ENI DE +V L +G T
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 129
Query: 671 XXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSER-LVQDALNHLMKGRT 729
I++ARA+ K+A + +LD LD ++E+ + + + LM +T
Sbjct: 130 LSGGQRAR--------ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 181
Query: 730 TLVIAHRLSTVQNAHQIALCSDGRIAELGTHFEL 763
+++ ++ ++ A +I + +G GT EL
Sbjct: 182 RILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 19/233 (8%)
Query: 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+V FS+ +L +NL ++ G + A+ GS+G+GK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 602 EDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP-DENVSXXXXXXXXXXXXXXXX 660
VS +Q + ++ ENI G+ DE
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIISGVSYDE----YRYKSVVKACQLQQD 142
Query: 661 XXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLV-QD 719
+ +T I++ARA+ K+A + +LD LD +E V +
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 720 ALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYAS 772
+ LM +T +++ ++ ++ A +I + G GT EL + + ++S
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 255
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 25/175 (14%)
Query: 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQE 622
++ G V +VG +G GK+T V++LA EPT G++ EW V+ Q
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------EWDLTVAYKPQ- 424
Query: 623 PVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXX 682
+ + E Y L + S P G
Sbjct: 425 ---YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLK------PLGIIDLYDRNVEDLSGG 475
Query: 683 XXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKG--RTTLVIAH 735
+AIA LL++A I +LDE ++ LD V A+ HLM+ +T LV+ H
Sbjct: 476 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ 741
+AIA ALL+ A DE +S LD V + L +G+ LV+ H L+ +
Sbjct: 237 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLD 292
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 563 LKSGSVTALVGSSGAGKSTIVQLLA 587
+K G V +VG +G GK+T V++LA
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILA 138
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 25/175 (14%)
Query: 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQE 622
++ G V +VG +G GK+T V++LA EPT G++ EW V+ Q
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------------EWDLTVAYKPQ- 410
Query: 623 PVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXX 682
+ + E Y L + S P G
Sbjct: 411 ---YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLK------PLGIIDLYDRNVEDLSGG 461
Query: 683 XXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKG--RTTLVIAH 735
+AIA LL++A I +LDE ++ LD V A+ HLM+ +T LV+ H
Sbjct: 462 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ 741
+AIA ALL+ A DE +S LD V + L +G+ LV+ H L+ +
Sbjct: 223 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLD 278
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 563 LKSGSVTALVGSSGAGKSTIVQLLA 587
+K G V +VG +G GK+T V++LA
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILA 124
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 18/232 (7%)
Query: 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+V FS+ +L +NL ++ G + A+ GS+G+GK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 602 EDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXX 661
VS +Q + ++ ENI DE
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIGVSYDE----YRYKSVVKACQLQQDI 142
Query: 662 XSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLV-QDA 720
+ +T I++ARA+ K+A + +LD LD +E V +
Sbjct: 143 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 202
Query: 721 LNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYAS 772
+ LM +T +++ ++ ++ A +I + G GT EL + + ++S
Sbjct: 203 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 254
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 18/220 (8%)
Query: 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK--- 609
VV L+ +N+ +++G ++G SGAGK+T ++++A P+ G + + + K
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 610 SEWARVVSIVNQEPVLF-SVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGY 668
R + +V Q L+ +++ ENIA+ L + +S + +
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 669 DTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDA----VSERLVQDALNHL 724
+A+ARAL+K+ +L+LDE S LDA + LV++ + L
Sbjct: 138 -------PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL 190
Query: 725 MKGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFEL 763
G T LV++H + + A ++ + G++ ++G +L
Sbjct: 191 --GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 45/251 (17%)
Query: 527 NSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLL 586
NSV SF ++GD L+DV N ++G + +VG +G+GK+T++++L
Sbjct: 15 NSV-SFRYNGDYVLKDV----------------NAEFETGKIYVVVGKNGSGKTTLLKIL 57
Query: 587 ARFYEPTGGRITVGGE---DLRTFDKSEWARVVSIVNQEP--VLFSVSVGENIAYGLP-- 639
A G + GE D D + V V Q P + +V E++A+ L
Sbjct: 58 A-------GLLAAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIM 110
Query: 640 --DENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNA 697
DE+ + P +AIA L ++
Sbjct: 111 GLDESEMRKRIKKVLELVGLSGLAAADP-----------LNLSGGQKQRLAIASMLARDT 159
Query: 698 PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALCSDGRIAE 756
L LDE S LD S+R + L L +G+ +++ H L + + I S+G I
Sbjct: 160 RFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDF 219
Query: 757 LGTHFELLARK 767
G+ E + R+
Sbjct: 220 CGSWEEFVERE 230
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 18/220 (8%)
Query: 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK--- 609
VV L+ +N+ +++G ++G SGAGK+T ++++A P+ G + + + K
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 610 SEWARVVSIVNQEPVLF-SVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGY 668
R + +V Q L+ +++ ENIA+ L + +S + +
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 669 DTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDA----VSERLVQDALNHL 724
+A+ARAL+K+ +L+LDE S LDA + LV++ + L
Sbjct: 138 -------PRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL 190
Query: 725 MKGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFEL 763
G T LV++H + + A ++ + G++ ++G +L
Sbjct: 191 --GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA--RFYEPTGGRITVGGEDL 604
D IL GL+L + G V A++G +G+GKST+ LA YE TGG + G+DL
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 67
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT--GGRITVGGEDLRTFDKSEW 612
IL G+NL + G V AL+G +GAGKST+ ++LA E T G I + GE++ E
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 613 AR 614
AR
Sbjct: 78 AR 79
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA--RFYEPTGG 595
+ ++D++ S D IL GL+L + G V A++G +G+GKST+ LA YE TGG
Sbjct: 21 LSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 77
Query: 596 RITVGGEDL 604
+ G+DL
Sbjct: 78 TVEFKGKDL 86
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 31/203 (15%)
Query: 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
+ +E++ F Y + + + LN L G + A++G +G GKST++ LL + P G+I
Sbjct: 5 LSVENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 598 ----TVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP---DENVSXXXXXX 650
++G + F S +A V + VL S N + P D V+
Sbjct: 63 EVYQSIGF--VPQFFSSPFAYSVLDI----VLMGRSTHIN-TFAKPKSHDYQVAMQALDY 115
Query: 651 XXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALD 710
SL G I IARA+ +++LDE TSALD
Sbjct: 116 LNLTHLAKREFTSLSGG---------------QRQLILIARAIASECKLILLDEPTSALD 160
Query: 711 AVSERLVQDALNHLMKGRTTLVI 733
++ +V L L + + V+
Sbjct: 161 LANQDIVLSLLIDLAQSQNMTVV 183
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQI 746
+A+ARA+L+NA IL+LDE T+ LD V+ + + LN G T++ I+H + N +
Sbjct: 557 LALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISHDSVFLDNVCEY 614
Query: 747 ALCSDGRIAELGTHFELLARKGQYASLV--CTQRLAFE 782
+ +G +L KG + V C A+E
Sbjct: 615 IINYEG--------LKLRKYKGNFTEFVKKCPAAKAYE 644
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 542 DVYFSYP--LRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
++ F YP +P + +N S A++G +GAGKST++ +L PT G +
Sbjct: 676 NMEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQI 746
+A+ARA+L+NA IL+LDE T+ LD V+ + + LN G T++ I+H + N +
Sbjct: 557 LALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISHDSVFLDNVCEY 614
Query: 747 ALCSDGRIAELGTHFELLARKGQYASLV--CTQRLAFE 782
+ +G +L KG + V C A+E
Sbjct: 615 IINYEG--------LKLRKYKGNFTEFVKKCPAAKAYE 644
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 545 FSYP--LRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
F YP +P + +N S A++G +GAGKST++ +L PT G +
Sbjct: 679 FQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQI 746
+A+ARA+L+NA IL+LDE T+ LD V+ + + LN G T++ I+H + N +
Sbjct: 551 LALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISHDSVFLDNVCEY 608
Query: 747 ALCSDGRIAELGTHFELLARKGQYASLV--CTQRLAFE 782
+ +G +L KG + V C A+E
Sbjct: 609 IINYEG--------LKLRKYKGNFTEFVKKCPAAKAYE 638
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 545 FSYP--LRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
F YP +P + +N S A++G +GAGKST++ +L PT G +
Sbjct: 673 FQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 24/190 (12%)
Query: 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDL-----RT 606
D +L + +T++ G+V G +G GK+T+++ ++ + +P G I G + +
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 607 FDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQ 666
F E V ++ E L +V+ YG+ L Q
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVAS----LYGVKVNKNEIMDALESVEVLDLKKKLGELSQ 136
Query: 667 GYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK 726
G + +A LL NA I +LD+ A+D S+ V ++ ++K
Sbjct: 137 G---------------TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK 181
Query: 727 GRTTLVIAHR 736
+ ++I+ R
Sbjct: 182 EKGIVIISSR 191
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDL 604
+ G++L + G + L+G++GAGK+T + +A G+I G+D+
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
+K G V +VG +G GK+T V+ LA EPT G+I
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKI 343
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKG--RTTLVIAH 735
+AIA LL++A I +LDE ++ LD V A+ HL + +T LV+ H
Sbjct: 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 687 IAIARALLKNAPILILDEATSALDAVSERL-VQDALNHL-MKGRTTLVIAHRLSTVQ 741
+AIA ALL+NA DE +S LD + +RL A+ L +G++ LV+ H L+ +
Sbjct: 167 VAIAAALLRNATFYFFDEPSSYLD-IRQRLNAARAIRRLSEEGKSVLVVEHDLAVLD 222
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 563 LKSGSVTALVGSSGAGKSTIVQLLA 587
+K G V +VG +G GKST V++LA
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILA 68
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617
T + G V LVG++G GKST +++LA +P GR D EW ++
Sbjct: 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD---------DPPEWQEIIK 145
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 545 FSYP----LRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR 596
FSYP + D V LN + ++G +G GK+T+++LLA +P G+
Sbjct: 354 FSYPSLKKTQGDFV-LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 687 IAIARALLKNAPILILDEATSALDA--VSE--RLVQDALNHLMKGRTTLVIAHRLSTVQN 742
++IARAL +L+ DE TSALD V E R++Q +G+T +V+ H + ++
Sbjct: 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARH 218
Query: 743 -AHQIALCSDGRIAELG 758
+ + G+I E G
Sbjct: 219 VSSHVIFLHQGKIEEEG 235
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR- 596
+ L+DV S L P L+ +++G + LVG +GAGKST LLAR T G+
Sbjct: 5 MQLQDVAESTRLGP-------LSGEVRAGEILHLVGPNGAGKST---LLARMAGMTSGKG 54
Query: 597 -ITVGGEDLRTFDKSEWARVVSIVNQE 622
I G+ L + ++ A + ++Q+
Sbjct: 55 SIQFAGQPLEAWSATKLALHRAYLSQQ 81
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR- 596
+ L+DV S L P L+ +++G + LVG +GAGKST LLAR T G+
Sbjct: 5 MQLQDVAESTRLGP-------LSGEVRAGEILHLVGPNGAGKST---LLARMAGMTSGKG 54
Query: 597 -ITVGGEDLRTFDKSEWARVVSIVNQE 622
I G+ L + ++ A + ++Q+
Sbjct: 55 SIQFAGQPLEAWSATKLALHRAYLSQQ 81
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 699 ILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNA-HQIALCSDG 752
+ ILDE T L R + + L+ L+ +G T +VI H L ++NA H I L +G
Sbjct: 829 LYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEG 884
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR--I 597
L+DV S L P L+ +++G + LVG +GAGKST LLAR T G+ I
Sbjct: 7 LQDVAESTRLGP-------LSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSI 56
Query: 598 TVGGEDLRTFDKSEWARVVSIVNQE 622
G+ L + ++ A + ++Q+
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQ 81
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR--I 597
L+DV S L P L+ +++G + LVG +GAGKST LLAR T G+ I
Sbjct: 7 LQDVAESTRLGP-------LSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSI 56
Query: 598 TVGGEDLRTFDKSEWARVVSIVNQE 622
G+ L + ++ A + ++Q+
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQ 81
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 19/135 (14%)
Query: 469 INSILSTTEIDDALANGLERDIQQKHVE-DENIKLFLFDGSNGKHQHLNMHYMSHLKSAN 527
+ I + +D+AL L RDIQ+ ++ D N++L L + + L + +
Sbjct: 14 LKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKE 73
Query: 528 SVCSFAWSGDICLEDV--YFSYPLRPDVVILNGLNLTLKSG-SVTALVGSSGAGKSTIVQ 584
+ + E++ + +P + +K ++ +VG G+GK+T V
Sbjct: 74 HIIKIVY------EELTKFLGTEAKP---------IEIKEKPTILLMVGIQGSGKTTTVA 118
Query: 585 LLARFYEPTGGRITV 599
LAR+++ G ++ V
Sbjct: 119 KLARYFQKRGYKVGV 133
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED 603
LN+ K+ V +VG +G GK+T + LAR +E G + + D
Sbjct: 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330
>pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
pdb|3HJN|B Chain B, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
Length = 197
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 573 GSSGAGKSTIVQLLARFYEPTGGRITVGGE 602
G G+GKST +QLLA++ E G ++ + E
Sbjct: 7 GIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED 603
LN+ K+ V +VG +G GK+T + LAR +E G + + D
Sbjct: 92 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 136
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED 603
LN+ K+ V +VG +G GK+T + LAR +E G + + D
Sbjct: 91 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 135
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED 603
LN+ K+ V +VG +G GK+T + LAR +E G + + D
Sbjct: 86 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 130
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 473 LSTTEIDDALANGLERDIQQ-------KHVEDENIKLFLFDGSN 509
+S TE+ + L GL IQ +H+E+ IK+F DGS+
Sbjct: 109 ISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSH 152
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDL 604
V LVG G GK+T LA FY+ G ++ + G D+
Sbjct: 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDL 604
V LVG G GK+T LA FY+ G ++ + G D+
Sbjct: 100 VIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV 136
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594
L L K +V LVG G+GK+T LAR+ + G
Sbjct: 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRG 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,295,715
Number of Sequences: 62578
Number of extensions: 723482
Number of successful extensions: 2093
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1845
Number of HSP's gapped (non-prelim): 211
length of query: 782
length of database: 14,973,337
effective HSP length: 106
effective length of query: 676
effective length of database: 8,340,069
effective search space: 5637886644
effective search space used: 5637886644
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)