Query 003981
Match_columns 782
No_of_seqs 409 out of 2784
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 15:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 4E-123 9E-128 1044.1 68.5 572 161-780 133-707 (716)
2 COG2274 SunT ABC-type bacterio 100.0 5E-112 1E-116 991.3 73.1 606 123-778 95-709 (709)
3 KOG0055 Multidrug/pheromone ex 100.0 6E-112 1E-116 1001.1 70.2 571 162-779 651-1227(1228)
4 PRK11174 cysteine/glutathione 100.0 3E-102 6E-107 915.7 76.6 566 163-779 10-586 (588)
5 COG1132 MdlB ABC-type multidru 100.0 2E-101 5E-106 903.2 75.4 563 163-779 4-566 (567)
6 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1E-100 3E-105 915.6 79.5 600 123-777 81-685 (686)
7 TIGR01193 bacteriocin_ABC ABC- 100.0 8E-101 2E-105 920.1 77.7 594 123-775 95-707 (708)
8 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1E-100 2E-105 920.2 77.5 598 123-774 95-709 (710)
9 KOG0055 Multidrug/pheromone ex 100.0 3E-102 7E-107 918.5 54.8 557 177-779 30-590 (1228)
10 TIGR03375 type_I_sec_LssB type 100.0 7.6E-99 2E-103 901.4 77.2 555 162-766 134-689 (694)
11 TIGR00958 3a01208 Conjugate Tr 100.0 8.4E-99 2E-103 900.4 76.0 564 161-774 147-711 (711)
12 PTZ00265 multidrug resistance 100.0 1.6E-98 4E-103 945.3 77.0 570 162-778 812-1466(1466)
13 TIGR01846 type_I_sec_HlyB type 100.0 6.6E-97 1E-101 884.2 78.6 605 123-778 81-693 (694)
14 PRK11160 cysteine/glutathione 100.0 5.9E-97 1E-101 865.6 76.0 561 165-776 6-573 (574)
15 PRK11176 lipid transporter ATP 100.0 2.8E-96 6E-101 863.7 77.5 568 162-778 12-580 (582)
16 KOG0056 Heavy metal exporter H 100.0 1.1E-98 2E-103 800.2 38.0 551 178-779 218-776 (790)
17 PRK10790 putative multidrug tr 100.0 1.7E-94 3.7E-99 849.8 77.4 562 164-779 12-577 (592)
18 TIGR02203 MsbA_lipidA lipid A 100.0 2.8E-93 6E-98 836.8 76.4 566 164-778 3-569 (571)
19 COG4988 CydD ABC-type transpor 100.0 6.3E-93 1.4E-97 787.0 70.0 552 179-779 4-557 (559)
20 PRK13657 cyclic beta-1,2-gluca 100.0 3.8E-92 8.3E-97 828.9 78.0 565 164-779 8-572 (588)
21 TIGR01192 chvA glucan exporter 100.0 1.1E-91 2.4E-96 822.4 78.3 566 163-779 7-572 (585)
22 TIGR02868 CydC thiol reductant 100.0 1.6E-92 3.5E-97 822.6 70.0 524 165-737 3-529 (529)
23 KOG0057 Mitochondrial Fe/S clu 100.0 6.3E-93 1.4E-97 774.2 60.0 553 178-782 33-591 (591)
24 TIGR02204 MsbA_rel ABC transpo 100.0 1.7E-91 3.6E-96 822.4 76.8 571 162-778 5-576 (576)
25 PRK10789 putative multidrug tr 100.0 1.2E-91 2.6E-96 820.5 73.1 547 184-780 4-553 (569)
26 TIGR00957 MRP_assoc_pro multi 100.0 6.4E-91 1.4E-95 885.0 74.8 567 162-777 951-1520(1522)
27 PLN03130 ABC transporter C fam 100.0 1E-89 2.2E-94 873.1 74.2 568 161-778 899-1475(1622)
28 TIGR02857 CydD thiol reductant 100.0 4.1E-89 8.9E-94 794.0 71.1 526 174-749 2-529 (529)
29 PTZ00265 multidrug resistance 100.0 9E-89 1.9E-93 857.0 76.8 570 162-779 46-730 (1466)
30 COG5265 ATM1 ABC-type transpor 100.0 7.8E-92 1.7E-96 742.9 40.2 491 237-775 5-496 (497)
31 COG4987 CydC ABC-type transpor 100.0 7.6E-89 1.6E-93 741.9 64.6 556 171-776 12-572 (573)
32 TIGR01842 type_I_sec_PrtD type 100.0 3.9E-88 8.4E-93 787.6 72.5 540 171-766 2-543 (544)
33 PTZ00243 ABC transporter; Prov 100.0 3.6E-88 7.9E-93 857.8 74.8 526 233-778 1017-1547(1560)
34 PLN03232 ABC transporter C fam 100.0 2.5E-88 5.3E-93 860.3 71.7 511 219-778 955-1472(1495)
35 KOG0054 Multidrug resistance-a 100.0 7E-85 1.5E-89 788.9 60.0 569 159-776 799-1374(1381)
36 TIGR01271 CFTR_protein cystic 100.0 4E-83 8.6E-88 811.4 74.3 513 228-778 939-1453(1490)
37 PLN03232 ABC transporter C fam 100.0 1.3E-82 2.7E-87 808.1 74.3 544 165-778 291-841 (1495)
38 PLN03130 ABC transporter C fam 100.0 2.4E-82 5.3E-87 805.6 75.8 545 165-777 291-840 (1622)
39 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.9E-82 4.1E-87 740.5 67.6 541 162-757 4-551 (555)
40 COG4618 ArpD ABC-type protease 100.0 1.3E-81 2.8E-86 678.9 55.8 546 166-766 14-561 (580)
41 KOG0054 Multidrug resistance-a 100.0 1.2E-78 2.6E-83 734.8 66.2 546 165-776 191-742 (1381)
42 PRK10522 multidrug transporter 100.0 9.8E-77 2.1E-81 691.9 67.8 532 165-767 3-541 (547)
43 TIGR00957 MRP_assoc_pro multi 100.0 7.3E-74 1.6E-78 729.0 75.8 548 164-777 306-862 (1522)
44 TIGR01271 CFTR_protein cystic 100.0 5.6E-71 1.2E-75 700.5 74.9 541 165-775 70-646 (1490)
45 TIGR00954 3a01203 Peroxysomal 100.0 4.1E-71 9E-76 654.4 63.7 549 163-751 79-653 (659)
46 PTZ00243 ABC transporter; Prov 100.0 1.5E-68 3.2E-73 678.9 74.3 595 160-776 229-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.3E-56 7.1E-61 473.4 28.3 238 536-778 1-238 (275)
48 PRK14257 phosphate ABC transpo 100.0 4.1E-53 9E-58 460.7 27.6 225 535-767 78-315 (329)
49 cd03252 ABCC_Hemolysin The ABC 100.0 1.7E-50 3.7E-55 422.3 28.7 236 538-776 1-236 (237)
50 COG1126 GlnQ ABC-type polar am 100.0 7.5E-51 1.6E-55 399.8 22.6 216 538-767 3-227 (240)
51 cd03288 ABCC_SUR2 The SUR doma 100.0 1.2E-49 2.7E-54 420.8 29.1 240 534-777 16-256 (257)
52 COG1135 AbcC ABC-type metal io 100.0 4.3E-50 9.2E-55 413.3 22.3 218 538-766 2-232 (339)
53 cd03253 ABCC_ATM1_transporter 100.0 7.1E-49 1.5E-53 409.8 28.4 235 538-776 1-235 (236)
54 COG1117 PstB ABC-type phosphat 100.0 1E-49 2.2E-54 389.8 19.7 220 537-766 7-238 (253)
55 COG1125 OpuBA ABC-type proline 100.0 1.2E-49 2.6E-54 398.3 20.3 216 538-767 2-227 (309)
56 cd03251 ABCC_MsbA MsbA is an e 100.0 1.1E-48 2.4E-53 407.9 27.8 233 538-773 1-233 (234)
57 COG4615 PvdE ABC-type sideroph 100.0 3.7E-46 8.1E-51 391.2 46.4 522 166-757 4-529 (546)
58 cd03254 ABCC_Glucan_exporter_l 100.0 1.5E-48 3.4E-53 405.4 27.6 228 537-768 2-229 (229)
59 COG4178 ABC-type uncharacteriz 100.0 3.6E-45 7.9E-50 413.0 55.8 501 192-751 64-588 (604)
60 cd03244 ABCC_MRP_domain2 Domai 100.0 2E-48 4.4E-53 402.3 27.0 220 536-759 1-220 (221)
61 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3E-48 6.5E-53 405.6 27.8 237 538-776 1-237 (238)
62 PRK13631 cbiO cobalt transport 100.0 6.4E-48 1.4E-52 418.8 27.5 221 537-764 21-264 (320)
63 TIGR02314 ABC_MetN D-methionin 100.0 1.2E-47 2.6E-52 418.8 26.6 227 538-775 2-242 (343)
64 cd03245 ABCC_bacteriocin_expor 100.0 4.2E-47 9.1E-52 392.2 27.2 219 537-758 2-220 (220)
65 cd03261 ABC_Org_Solvent_Resist 100.0 5.6E-47 1.2E-51 395.3 25.7 220 538-771 1-232 (235)
66 COG3839 MalK ABC-type sugar tr 100.0 4.1E-47 8.8E-52 406.2 22.9 214 537-766 3-224 (338)
67 cd03260 ABC_PstB_phosphate_tra 100.0 7.9E-47 1.7E-51 392.1 23.5 214 538-763 1-227 (227)
68 COG1122 CbiO ABC-type cobalt t 100.0 1E-46 2.2E-51 388.7 23.5 217 537-766 3-229 (235)
69 PRK13650 cbiO cobalt transport 100.0 2.2E-46 4.8E-51 400.4 27.0 218 538-766 5-230 (279)
70 cd03248 ABCC_TAP TAP, the Tran 100.0 2.1E-46 4.5E-51 388.7 24.7 219 534-754 8-226 (226)
71 PRK14269 phosphate ABC transpo 100.0 3.3E-46 7.2E-51 392.2 25.2 219 538-766 3-231 (246)
72 COG3840 ThiQ ABC-type thiamine 100.0 2.2E-46 4.8E-51 357.2 20.4 213 538-768 2-222 (231)
73 COG1120 FepC ABC-type cobalami 100.0 2.7E-46 5.8E-51 385.8 22.3 215 538-766 3-229 (258)
74 COG3842 PotA ABC-type spermidi 100.0 2E-46 4.4E-51 402.8 21.8 215 537-767 5-228 (352)
75 PRK11650 ugpC glycerol-3-phosp 100.0 9E-46 1.9E-50 407.1 27.1 215 538-767 4-226 (356)
76 COG1116 TauB ABC-type nitrate/ 100.0 3.4E-46 7.3E-51 377.9 21.5 200 537-755 3-212 (248)
77 PRK14250 phosphate ABC transpo 100.0 1.6E-45 3.5E-50 385.8 26.9 224 537-774 3-231 (241)
78 PRK13647 cbiO cobalt transport 100.0 1.2E-45 2.5E-50 393.9 26.3 215 537-764 4-226 (274)
79 PRK11153 metN DL-methionine tr 100.0 1.2E-45 2.5E-50 405.3 26.9 218 538-766 2-231 (343)
80 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.8E-45 3.9E-50 376.6 25.9 203 536-760 5-207 (207)
81 PRK11432 fbpC ferric transport 100.0 1.2E-45 2.6E-50 405.0 26.2 215 537-767 6-228 (351)
82 PRK14273 phosphate ABC transpo 100.0 1.2E-45 2.6E-50 389.8 24.7 220 537-766 7-239 (254)
83 cd03256 ABC_PhnC_transporter A 100.0 1.3E-45 2.9E-50 386.2 24.6 215 538-765 1-234 (241)
84 PRK13635 cbiO cobalt transport 100.0 2.2E-45 4.7E-50 392.7 26.5 217 538-766 6-230 (279)
85 TIGR00972 3a0107s01c2 phosphat 100.0 1.3E-45 2.8E-50 387.9 24.4 219 538-766 2-233 (247)
86 PRK13642 cbiO cobalt transport 100.0 2.3E-45 5E-50 392.3 26.5 220 537-767 4-231 (277)
87 COG1136 SalX ABC-type antimicr 100.0 2.3E-45 4.9E-50 371.9 24.7 209 538-756 2-222 (226)
88 cd03219 ABC_Mj1267_LivG_branch 100.0 1.2E-45 2.6E-50 385.5 23.4 219 538-766 1-233 (236)
89 COG1124 DppF ABC-type dipeptid 100.0 1.1E-45 2.4E-50 370.6 22.0 229 537-776 3-243 (252)
90 TIGR01186 proV glycine betaine 100.0 1.2E-45 2.7E-50 405.2 24.4 204 552-766 5-220 (363)
91 PRK13637 cbiO cobalt transport 100.0 3.4E-45 7.4E-50 392.7 27.3 219 538-765 3-234 (287)
92 TIGR00960 3a0501s02 Type II (G 100.0 9.6E-46 2.1E-50 381.1 22.1 205 538-754 2-216 (216)
93 PRK14242 phosphate transporter 100.0 2.6E-45 5.6E-50 387.1 25.8 220 537-766 6-238 (253)
94 PRK13643 cbiO cobalt transport 100.0 2.7E-45 5.9E-50 393.7 26.4 218 538-766 2-234 (288)
95 PRK13646 cbiO cobalt transport 100.0 2.9E-45 6.3E-50 393.2 26.2 222 538-766 3-236 (286)
96 cd03258 ABC_MetN_methionine_tr 100.0 2.7E-45 5.8E-50 382.2 25.1 217 538-765 2-230 (233)
97 cd03296 ABC_CysA_sulfate_impor 100.0 2.8E-45 6E-50 383.5 25.2 213 538-766 3-227 (239)
98 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.5E-45 9.7E-50 381.3 26.6 219 538-767 2-223 (236)
99 PRK10744 pstB phosphate transp 100.0 3.8E-45 8.1E-50 387.3 26.1 222 535-766 11-245 (260)
100 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.4E-44 3.1E-49 385.6 30.6 219 535-774 37-256 (282)
101 cd03263 ABC_subfamily_A The AB 100.0 2.6E-45 5.6E-50 378.9 24.0 213 538-763 1-219 (220)
102 TIGR03265 PhnT2 putative 2-ami 100.0 2.7E-45 5.9E-50 402.8 25.6 215 537-767 4-226 (353)
103 TIGR02315 ABC_phnC phosphonate 100.0 2.8E-45 6.2E-50 384.3 24.7 214 538-764 2-234 (243)
104 cd03250 ABCC_MRP_domain1 Domai 100.0 4.1E-45 8.9E-50 373.1 24.6 200 538-753 1-204 (204)
105 PRK14235 phosphate transporter 100.0 5.2E-45 1.1E-49 387.6 25.9 222 535-766 17-252 (267)
106 cd03226 ABC_cobalt_CbiO_domain 100.0 2.4E-45 5.2E-50 375.1 22.3 201 539-755 1-205 (205)
107 COG1127 Ttg2A ABC-type transpo 100.0 3.8E-45 8.2E-50 364.9 22.6 225 537-775 8-246 (263)
108 PRK13632 cbiO cobalt transport 100.0 6.4E-45 1.4E-49 387.8 26.0 218 537-766 7-232 (271)
109 PRK13636 cbiO cobalt transport 100.0 6.2E-45 1.3E-49 390.1 25.8 217 537-766 5-232 (283)
110 cd03259 ABC_Carb_Solutes_like 100.0 2E-45 4.3E-50 377.9 21.1 205 538-758 1-213 (213)
111 cd03224 ABC_TM1139_LivF_branch 100.0 3.9E-45 8.5E-50 378.0 23.4 217 538-765 1-221 (222)
112 PRK14267 phosphate ABC transpo 100.0 5E-45 1.1E-49 384.9 24.6 221 537-767 4-239 (253)
113 PRK13640 cbiO cobalt transport 100.0 1.1E-44 2.3E-49 388.0 26.7 217 537-765 5-232 (282)
114 TIGR03258 PhnT 2-aminoethylpho 100.0 6.8E-45 1.5E-49 400.3 25.7 215 536-766 4-229 (362)
115 PRK13652 cbiO cobalt transport 100.0 1.1E-44 2.3E-49 387.2 26.4 216 538-766 4-228 (277)
116 PRK10851 sulfate/thiosulfate t 100.0 7.5E-45 1.6E-49 399.3 25.8 213 538-766 3-227 (353)
117 PRK13634 cbiO cobalt transport 100.0 8.4E-45 1.8E-49 390.3 25.6 219 538-766 3-236 (290)
118 PRK09452 potA putrescine/sperm 100.0 1.1E-44 2.4E-49 400.0 27.2 215 537-767 14-236 (375)
119 PRK14240 phosphate transporter 100.0 1.2E-44 2.6E-49 381.3 26.0 221 536-766 2-235 (250)
120 cd03295 ABC_OpuCA_Osmoprotecti 100.0 8.1E-45 1.8E-49 380.8 24.4 218 538-766 1-226 (242)
121 PRK14274 phosphate ABC transpo 100.0 9.9E-45 2.1E-49 383.9 25.3 220 537-766 12-244 (259)
122 cd03218 ABC_YhbG The ABC trans 100.0 7.8E-45 1.7E-49 378.3 24.1 218 538-765 1-222 (232)
123 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.1E-45 1.1E-49 376.1 22.3 206 538-754 1-218 (218)
124 cd03264 ABC_drug_resistance_li 100.0 6.1E-45 1.3E-49 373.8 22.7 205 538-758 1-211 (211)
125 PRK14247 phosphate ABC transpo 100.0 9.3E-45 2E-49 382.1 24.3 219 538-766 4-235 (250)
126 PRK11629 lolD lipoprotein tran 100.0 1.3E-44 2.8E-49 377.1 25.0 211 538-759 6-228 (233)
127 PRK13633 cobalt transporter AT 100.0 1.6E-44 3.4E-49 386.4 26.2 219 537-766 4-234 (280)
128 cd03294 ABC_Pro_Gly_Bertaine T 100.0 5.5E-45 1.2E-49 387.8 22.4 214 539-766 26-251 (269)
129 PRK14251 phosphate ABC transpo 100.0 1.1E-44 2.5E-49 381.7 24.5 221 537-767 4-237 (251)
130 TIGR03005 ectoine_ehuA ectoine 100.0 1.2E-44 2.7E-49 381.6 24.7 215 538-766 1-237 (252)
131 cd03268 ABC_BcrA_bacitracin_re 100.0 8.6E-45 1.9E-49 371.8 22.8 205 538-758 1-208 (208)
132 PRK14245 phosphate ABC transpo 100.0 1.2E-44 2.7E-49 381.2 24.6 220 537-766 3-235 (250)
133 PRK14237 phosphate transporter 100.0 2E-44 4.4E-49 383.1 26.4 221 536-766 19-252 (267)
134 PRK14236 phosphate transporter 100.0 1.5E-44 3.2E-49 385.2 25.1 222 535-766 23-257 (272)
135 PRK14268 phosphate ABC transpo 100.0 1.7E-44 3.6E-49 381.9 25.3 220 537-766 12-243 (258)
136 PRK11000 maltose/maltodextrin 100.0 1.5E-44 3.4E-49 399.7 26.1 214 537-766 3-224 (369)
137 cd03266 ABC_NatA_sodium_export 100.0 1.2E-44 2.6E-49 373.3 23.4 209 538-758 2-218 (218)
138 PRK14239 phosphate transporter 100.0 2.3E-44 5E-49 379.6 25.9 220 537-766 5-237 (252)
139 PRK14244 phosphate ABC transpo 100.0 8.6E-45 1.9E-49 382.7 22.4 219 538-766 6-238 (251)
140 TIGR02211 LolD_lipo_ex lipopro 100.0 1.9E-44 4.2E-49 372.6 24.4 207 538-755 2-220 (221)
141 PRK13644 cbiO cobalt transport 100.0 3E-44 6.5E-49 383.0 26.6 216 538-766 2-225 (274)
142 PRK13648 cbiO cobalt transport 100.0 2.8E-44 6.2E-49 382.4 26.3 218 537-766 7-232 (269)
143 PRK10575 iron-hydroxamate tran 100.0 1.9E-44 4.1E-49 383.0 24.8 223 537-774 11-245 (265)
144 PRK14249 phosphate ABC transpo 100.0 3.9E-44 8.5E-49 377.6 26.9 220 537-766 4-236 (251)
145 cd03265 ABC_DrrA DrrA is the A 100.0 1.8E-44 3.9E-49 372.7 23.8 211 538-763 1-219 (220)
146 TIGR03410 urea_trans_UrtE urea 100.0 1.4E-44 3E-49 376.0 23.1 214 538-764 1-220 (230)
147 PRK10619 histidine/lysine/argi 100.0 3E-44 6.5E-49 379.8 25.6 218 536-766 4-242 (257)
148 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.9E-44 4.1E-49 370.2 23.2 212 537-766 4-228 (254)
149 cd03290 ABCC_SUR1_N The SUR do 100.0 3E-44 6.5E-49 370.5 24.9 210 539-753 2-218 (218)
150 PRK14262 phosphate ABC transpo 100.0 3.6E-44 7.8E-49 377.7 25.9 227 538-774 4-244 (250)
151 PRK13651 cobalt transporter AT 100.0 3.4E-44 7.4E-49 387.3 26.2 218 538-766 3-255 (305)
152 PRK11124 artP arginine transpo 100.0 2.2E-44 4.7E-49 377.5 24.0 215 538-766 3-231 (242)
153 PRK15079 oligopeptide ABC tran 100.0 2.5E-44 5.4E-49 392.2 25.2 226 537-772 8-259 (331)
154 PRK14256 phosphate ABC transpo 100.0 4.2E-44 9.2E-49 377.6 26.2 221 536-766 3-237 (252)
155 PRK09493 glnQ glutamine ABC tr 100.0 2.7E-44 5.9E-49 376.3 24.4 215 538-766 2-226 (240)
156 PRK09536 btuD corrinoid ABC tr 100.0 2.9E-44 6.4E-49 398.9 26.1 215 538-766 4-229 (402)
157 PRK14261 phosphate ABC transpo 100.0 3.7E-44 7.9E-49 378.3 25.6 229 537-775 6-248 (253)
158 TIGR02769 nickel_nikE nickel i 100.0 3.9E-44 8.5E-49 380.5 25.8 227 538-774 3-250 (265)
159 PRK13649 cbiO cobalt transport 100.0 4.7E-44 1E-48 383.0 26.6 219 538-766 3-235 (280)
160 PRK14248 phosphate ABC transpo 100.0 3.5E-44 7.6E-49 381.6 25.4 220 537-766 21-253 (268)
161 PRK14259 phosphate ABC transpo 100.0 7.1E-44 1.5E-48 379.3 27.8 221 536-766 12-254 (269)
162 cd03301 ABC_MalK_N The N-termi 100.0 2.7E-44 5.9E-49 369.4 23.6 205 538-758 1-213 (213)
163 PRK14238 phosphate transporter 100.0 3.5E-44 7.5E-49 382.1 25.3 220 537-766 24-256 (271)
164 COG2884 FtsE Predicted ATPase 100.0 9.5E-45 2.1E-49 348.9 18.7 209 538-760 2-221 (223)
165 COG3638 ABC-type phosphate/pho 100.0 1.6E-44 3.4E-49 359.5 20.9 216 537-765 3-237 (258)
166 PRK11231 fecE iron-dicitrate t 100.0 2.9E-44 6.3E-49 379.5 24.3 222 538-774 3-235 (255)
167 PRK14253 phosphate ABC transpo 100.0 5.4E-44 1.2E-48 376.1 26.0 220 537-766 3-234 (249)
168 PRK11831 putative ABC transpor 100.0 4.4E-44 9.4E-49 381.0 25.3 225 537-775 7-244 (269)
169 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.7E-44 5.9E-49 371.3 23.0 207 538-760 1-218 (220)
170 PRK14271 phosphate ABC transpo 100.0 6.4E-44 1.4E-48 380.8 26.4 221 537-767 21-253 (276)
171 PRK13645 cbiO cobalt transport 100.0 5.7E-44 1.2E-48 384.0 26.1 225 535-765 4-240 (289)
172 cd03292 ABC_FtsE_transporter F 100.0 3.6E-44 7.9E-49 368.7 23.5 204 538-754 1-214 (214)
173 cd03225 ABC_cobalt_CbiO_domain 100.0 2.7E-44 5.8E-49 368.9 22.4 203 539-753 1-211 (211)
174 PRK11607 potG putrescine trans 100.0 6.4E-44 1.4E-48 394.6 27.0 215 537-767 19-241 (377)
175 PRK11264 putative amino-acid A 100.0 6.9E-44 1.5E-48 375.5 25.8 215 538-766 4-234 (250)
176 TIGR03411 urea_trans_UrtD urea 100.0 7.3E-44 1.6E-48 373.5 25.9 214 538-765 3-231 (242)
177 cd03247 ABCC_cytochrome_bd The 100.0 3.2E-44 7E-49 358.6 22.1 178 538-758 1-178 (178)
178 PRK14243 phosphate transporter 100.0 8E-44 1.7E-48 377.9 26.1 220 537-766 10-249 (264)
179 TIGR02673 FtsE cell division A 100.0 2.8E-44 6.1E-49 369.6 21.8 203 538-753 2-214 (214)
180 PRK11614 livF leucine/isoleuci 100.0 5.1E-44 1.1E-48 373.5 24.0 218 537-765 5-226 (237)
181 PRK10070 glycine betaine trans 100.0 7.8E-44 1.7E-48 395.2 26.6 202 554-766 42-255 (400)
182 TIGR00968 3a0106s01 sulfate AB 100.0 9.2E-44 2E-48 371.6 25.3 212 538-765 1-220 (237)
183 PRK14270 phosphate ABC transpo 100.0 1.2E-43 2.6E-48 374.0 26.4 220 537-766 4-236 (251)
184 PRK10895 lipopolysaccharide AB 100.0 1.2E-43 2.6E-48 371.7 26.1 219 538-766 4-227 (241)
185 PRK13639 cbiO cobalt transport 100.0 1E-43 2.2E-48 379.3 25.6 216 538-766 2-227 (275)
186 PRK10584 putative ABC transpor 100.0 9.6E-44 2.1E-48 369.3 24.7 210 537-757 6-227 (228)
187 PRK11300 livG leucine/isoleuci 100.0 1.1E-43 2.5E-48 374.9 25.6 221 537-765 5-243 (255)
188 PRK13537 nodulation ABC transp 100.0 7.6E-44 1.7E-48 385.2 24.8 215 537-766 7-228 (306)
189 PRK10908 cell division protein 100.0 1.2E-43 2.6E-48 367.1 25.2 206 538-756 2-217 (222)
190 PRK14275 phosphate ABC transpo 100.0 2.2E-43 4.8E-48 378.5 28.0 221 536-766 38-271 (286)
191 cd03300 ABC_PotA_N PotA is an 100.0 8.9E-44 1.9E-48 370.5 24.1 213 538-766 1-221 (232)
192 PRK10247 putative ABC transpor 100.0 6.2E-44 1.3E-48 370.0 22.8 212 537-761 7-223 (225)
193 cd03257 ABC_NikE_OppD_transpor 100.0 1.1E-43 2.4E-48 368.6 24.6 214 538-758 2-228 (228)
194 PRK11247 ssuB aliphatic sulfon 100.0 1.1E-43 2.3E-48 374.8 24.8 204 537-761 12-219 (257)
195 PRK13548 hmuV hemin importer A 100.0 1.9E-43 4.2E-48 373.8 26.8 215 538-766 3-231 (258)
196 TIGR03873 F420-0_ABC_ATP propo 100.0 1.1E-43 2.4E-48 375.3 24.9 214 538-765 2-226 (256)
197 PRK13641 cbiO cobalt transport 100.0 1.9E-43 4.2E-48 379.3 27.1 219 538-766 3-235 (287)
198 PRK13638 cbiO cobalt transport 100.0 1.2E-43 2.6E-48 378.0 25.2 215 538-766 2-226 (271)
199 cd03235 ABC_Metallic_Cations A 100.0 4.1E-44 8.9E-49 368.1 20.8 200 539-758 1-213 (213)
200 PRK14266 phosphate ABC transpo 100.0 1.7E-43 3.8E-48 372.5 26.0 219 538-766 4-235 (250)
201 PRK14241 phosphate transporter 100.0 1E-43 2.3E-48 375.9 24.3 220 537-766 4-243 (258)
202 PRK10771 thiQ thiamine transpo 100.0 2E-43 4.4E-48 367.8 25.9 212 538-767 2-221 (232)
203 PRK14252 phosphate ABC transpo 100.0 1.8E-43 3.9E-48 375.6 25.9 222 535-766 14-250 (265)
204 PRK14260 phosphate ABC transpo 100.0 1.2E-43 2.5E-48 375.7 24.3 220 537-766 7-244 (259)
205 PRK11308 dppF dipeptide transp 100.0 1.8E-43 4E-48 385.0 25.9 225 538-772 6-252 (327)
206 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.6E-43 3.4E-48 363.3 24.0 203 538-758 1-211 (211)
207 COG1118 CysA ABC-type sulfate/ 100.0 5.4E-44 1.2E-48 367.2 20.1 215 537-767 2-229 (345)
208 PRK14254 phosphate ABC transpo 100.0 3.4E-43 7.4E-48 376.8 27.1 221 536-766 38-270 (285)
209 PRK11022 dppD dipeptide transp 100.0 1.8E-43 3.9E-48 385.2 25.4 227 538-772 4-251 (326)
210 PRK10253 iron-enterobactin tra 100.0 2E-43 4.3E-48 375.1 25.1 215 537-765 7-233 (265)
211 TIGR01288 nodI ATP-binding ABC 100.0 2.1E-43 4.5E-48 381.9 25.6 219 537-766 4-225 (303)
212 PRK14264 phosphate ABC transpo 100.0 4.2E-43 9.2E-48 379.6 27.8 221 536-766 44-290 (305)
213 PRK09473 oppD oligopeptide tra 100.0 2.5E-43 5.3E-48 384.5 26.1 228 537-772 12-259 (330)
214 PRK15112 antimicrobial peptide 100.0 2.6E-43 5.7E-48 374.6 25.6 230 537-777 4-253 (267)
215 PRK14272 phosphate ABC transpo 100.0 2.1E-43 4.5E-48 372.3 24.6 219 538-766 5-237 (252)
216 PRK14263 phosphate ABC transpo 100.0 3.4E-43 7.4E-48 372.3 26.3 219 538-766 9-246 (261)
217 PRK14246 phosphate ABC transpo 100.0 2.6E-43 5.6E-48 372.4 25.3 228 537-774 10-251 (257)
218 TIGR03415 ABC_choXWV_ATP choli 100.0 1.9E-43 4.2E-48 389.5 25.2 217 542-772 29-262 (382)
219 cd03262 ABC_HisP_GlnQ_permease 100.0 1.3E-43 2.8E-48 364.3 22.0 203 538-754 1-213 (213)
220 cd03246 ABCC_Protease_Secretio 100.0 1.7E-43 3.7E-48 351.8 22.0 172 538-754 1-173 (173)
221 cd03269 ABC_putative_ATPase Th 100.0 1.2E-43 2.6E-48 363.8 21.5 203 538-758 1-210 (210)
222 TIGR03522 GldA_ABC_ATP gliding 100.0 3.5E-43 7.5E-48 379.7 25.8 214 538-766 3-222 (301)
223 PRK14258 phosphate ABC transpo 100.0 4.9E-43 1.1E-47 371.3 26.0 221 536-766 6-246 (261)
224 TIGR01978 sufC FeS assembly AT 100.0 3.1E-43 6.8E-48 368.8 23.7 215 538-764 1-233 (243)
225 PRK14255 phosphate ABC transpo 100.0 3.5E-43 7.6E-48 370.6 24.2 220 537-766 5-237 (252)
226 cd03299 ABC_ModC_like Archeal 100.0 6E-43 1.3E-47 365.0 24.8 212 538-766 1-220 (235)
227 TIGR01277 thiQ thiamine ABC tr 100.0 6E-43 1.3E-47 359.6 24.3 203 539-759 2-212 (213)
228 PRK13536 nodulation factor exp 100.0 6E-43 1.3E-47 382.4 25.6 219 537-766 41-262 (340)
229 PRK14265 phosphate ABC transpo 100.0 1.1E-42 2.4E-47 371.0 26.9 220 537-766 20-259 (274)
230 PRK11701 phnK phosphonate C-P 100.0 9.3E-43 2E-47 368.6 26.1 227 537-772 6-249 (258)
231 PRK10419 nikE nickel transport 100.0 5.7E-43 1.2E-47 372.1 24.1 230 538-774 4-250 (268)
232 PRK09984 phosphonate/organopho 100.0 1.1E-42 2.3E-47 369.1 25.8 225 537-777 4-252 (262)
233 PRK11144 modC molybdate transp 100.0 7.7E-43 1.7E-47 384.3 25.5 211 538-767 2-220 (352)
234 PRK13547 hmuV hemin importer A 100.0 6.9E-43 1.5E-47 371.6 24.0 214 538-765 2-244 (272)
235 PRK15093 antimicrobial peptide 100.0 1.5E-42 3.2E-47 379.1 26.6 227 538-772 4-256 (330)
236 TIGR02982 heterocyst_DevA ABC 100.0 1.2E-42 2.6E-47 359.1 23.0 206 538-754 2-219 (220)
237 cd03234 ABCG_White The White s 100.0 6.7E-43 1.4E-47 362.5 21.1 212 538-758 4-226 (226)
238 PRK10418 nikD nickel transport 100.0 2.4E-42 5.3E-47 364.6 25.7 228 537-778 4-245 (254)
239 TIGR01188 drrA daunorubicin re 100.0 1.5E-42 3.3E-47 375.1 23.8 202 553-766 6-214 (302)
240 PRK11248 tauB taurine transpor 100.0 4.3E-42 9.2E-47 362.7 24.5 204 538-760 2-215 (255)
241 TIGR02142 modC_ABC molybdenum 100.0 3.8E-42 8.3E-47 379.3 25.0 210 542-767 4-223 (354)
242 cd03233 ABC_PDR_domain1 The pl 100.0 3.1E-42 6.8E-47 351.2 22.4 190 538-758 4-202 (202)
243 TIGR03740 galliderm_ABC gallid 100.0 3.4E-42 7.3E-47 356.5 22.4 207 538-762 1-210 (223)
244 cd03230 ABC_DR_subfamily_A Thi 100.0 5.7E-42 1.2E-46 340.9 21.4 170 538-754 1-173 (173)
245 cd03229 ABC_Class3 This class 100.0 7.9E-42 1.7E-46 341.4 21.2 172 538-753 1-178 (178)
246 cd03228 ABCC_MRP_Like The MRP 100.0 1.1E-41 2.5E-46 338.1 21.8 171 538-753 1-171 (171)
247 cd03297 ABC_ModC_molybdenum_tr 100.0 8.7E-42 1.9E-46 351.2 21.6 203 538-758 2-214 (214)
248 TIGR02323 CP_lyasePhnK phospho 100.0 2.7E-41 5.8E-46 356.5 25.5 227 537-773 3-247 (253)
249 cd03232 ABC_PDR_domain2 The pl 100.0 8.7E-42 1.9E-46 345.2 20.9 182 537-758 3-192 (192)
250 PRK09580 sufC cysteine desulfu 100.0 1.4E-41 3E-46 357.5 23.1 217 538-764 2-234 (248)
251 CHL00131 ycf16 sulfate ABC tra 100.0 2.4E-41 5.1E-46 356.7 24.1 215 537-763 7-239 (252)
252 PRK15056 manganese/iron transp 100.0 2.4E-41 5.2E-46 360.5 24.0 212 537-765 6-230 (272)
253 cd03213 ABCG_EPDR ABCG transpo 100.0 1.5E-41 3.3E-46 344.0 21.3 183 537-758 3-194 (194)
254 cd03215 ABC_Carb_Monos_II This 100.0 1.3E-41 2.9E-46 341.0 20.6 171 538-754 5-182 (182)
255 TIGR03608 L_ocin_972_ABC putat 100.0 1.5E-41 3.2E-46 347.3 20.8 196 540-749 1-206 (206)
256 cd03223 ABCD_peroxisomal_ALDP 100.0 2.3E-41 5E-46 334.1 21.3 164 538-753 1-164 (166)
257 COG1131 CcmA ABC-type multidru 100.0 3.3E-41 7.2E-46 361.6 23.9 216 537-766 4-227 (293)
258 PRK09544 znuC high-affinity zi 100.0 6.2E-41 1.4E-45 352.8 25.2 207 538-774 5-217 (251)
259 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.6E-41 9.9E-46 342.2 23.0 185 538-764 1-192 (200)
260 PRK15439 autoinducer 2 ABC tra 100.0 1.1E-40 2.4E-45 385.5 26.0 215 537-765 11-229 (510)
261 PRK03695 vitamin B12-transport 100.0 1.2E-40 2.6E-45 350.4 23.8 215 539-774 2-230 (248)
262 cd03214 ABC_Iron-Siderophores_ 100.0 5.6E-41 1.2E-45 335.9 20.1 177 539-758 1-180 (180)
263 TIGR02770 nickel_nikD nickel i 100.0 9.5E-41 2.1E-45 347.3 22.2 208 555-772 1-223 (230)
264 TIGR01184 ntrCD nitrate transp 100.0 1.4E-40 2.9E-45 346.1 22.0 193 556-764 1-203 (230)
265 COG4175 ProV ABC-type proline/ 100.0 9E-41 2E-45 343.4 19.7 220 537-767 4-256 (386)
266 PRK10261 glutathione transport 100.0 3.3E-40 7.1E-45 389.4 27.2 225 537-772 313-561 (623)
267 cd03231 ABC_CcmA_heme_exporter 100.0 3.3E-40 7.1E-45 336.2 22.8 195 538-749 1-198 (201)
268 cd03216 ABC_Carb_Monos_I This 100.0 3.9E-40 8.4E-45 324.4 22.0 159 538-756 1-162 (163)
269 PRK13540 cytochrome c biogenes 100.0 2.8E-40 6E-45 336.5 21.4 195 538-748 2-198 (200)
270 COG1123 ATPase components of v 100.0 4.2E-40 9.1E-45 367.7 24.7 228 537-774 280-529 (539)
271 cd03267 ABC_NatA_like Similar 100.0 3.6E-40 7.8E-45 344.3 22.3 194 553-758 34-236 (236)
272 PRK13538 cytochrome c biogenes 100.0 4E-40 8.8E-45 336.3 22.2 197 538-749 2-202 (204)
273 PRK13549 xylose transporter AT 100.0 4.8E-40 1E-44 380.2 25.3 214 537-764 5-231 (506)
274 PRK09700 D-allose transporter 100.0 2.5E-40 5.5E-45 383.0 22.8 214 537-764 5-233 (510)
275 COG4619 ABC-type uncharacteriz 100.0 4.7E-41 1E-45 316.5 12.4 194 552-755 15-213 (223)
276 KOG0060 Long-chain acyl-CoA tr 100.0 3.6E-37 7.8E-42 338.1 44.7 508 207-751 115-641 (659)
277 PRK13539 cytochrome c biogenes 100.0 7.8E-40 1.7E-44 335.0 22.1 196 538-751 3-200 (207)
278 PRK10762 D-ribose transporter 100.0 4.4E-40 9.6E-45 380.0 22.3 213 538-764 5-229 (501)
279 TIGR01189 ccmA heme ABC export 100.0 6.1E-40 1.3E-44 333.4 20.7 195 538-748 1-197 (198)
280 PRK11288 araG L-arabinose tran 100.0 1.2E-39 2.6E-44 376.4 25.2 209 537-759 4-223 (501)
281 PLN03211 ABC transporter G-25; 100.0 7.1E-40 1.5E-44 386.4 23.2 213 540-765 71-296 (659)
282 TIGR00955 3a01204 The Eye Pigm 100.0 2.7E-40 5.9E-45 389.6 19.1 220 537-765 17-256 (617)
283 COG0410 LivF ABC-type branched 100.0 2E-39 4.3E-44 323.5 22.2 220 538-767 4-228 (237)
284 COG4555 NatA ABC-type Na+ tran 100.0 3.4E-40 7.4E-45 320.0 16.2 216 538-767 2-224 (245)
285 PRK10938 putative molybdenum t 100.0 1.3E-39 2.8E-44 375.3 23.9 210 538-765 4-224 (490)
286 PRK15134 microcin C ABC transp 100.0 9.7E-40 2.1E-44 379.6 22.9 219 537-766 275-516 (529)
287 PRK10261 glutathione transport 100.0 1.3E-39 2.9E-44 384.1 24.1 222 537-766 12-259 (623)
288 PRK10982 galactose/methyl gala 100.0 1.2E-39 2.7E-44 375.6 22.9 215 540-764 1-222 (491)
289 PRK15134 microcin C ABC transp 100.0 3.1E-39 6.6E-44 375.4 25.2 222 537-766 5-247 (529)
290 TIGR02324 CP_lyasePhnL phospho 100.0 2.9E-39 6.2E-44 334.8 22.1 202 538-749 2-222 (224)
291 COG0444 DppD ABC-type dipeptid 100.0 4E-39 8.6E-44 337.2 23.2 222 538-767 2-245 (316)
292 PRK13543 cytochrome c biogenes 100.0 2.7E-39 5.9E-44 332.7 21.7 198 537-751 11-212 (214)
293 PRK10535 macrolide transporter 100.0 3.7E-39 8.1E-44 381.7 24.1 221 537-764 4-231 (648)
294 TIGR02633 xylG D-xylose ABC tr 100.0 5.5E-39 1.2E-43 371.1 24.7 212 538-763 2-228 (500)
295 TIGR03771 anch_rpt_ABC anchore 100.0 3.6E-39 7.9E-44 333.8 20.3 196 561-774 1-209 (223)
296 PRK13546 teichoic acids export 100.0 1.3E-38 2.8E-43 337.2 24.9 199 552-774 36-241 (264)
297 TIGR03269 met_CoM_red_A2 methy 100.0 5.4E-39 1.2E-43 372.7 24.1 223 537-765 279-517 (520)
298 TIGR03269 met_CoM_red_A2 methy 100.0 4.7E-39 1E-43 373.3 23.3 215 538-766 1-259 (520)
299 COG1123 ATPase components of v 100.0 6.7E-39 1.4E-43 358.1 23.3 226 537-771 5-251 (539)
300 PRK13545 tagH teichoic acids e 100.0 1.7E-38 3.8E-43 356.1 26.6 214 537-774 21-241 (549)
301 TIGR01166 cbiO cobalt transpor 100.0 3.5E-39 7.6E-44 325.7 18.8 177 552-739 4-189 (190)
302 PRK13541 cytochrome c biogenes 100.0 5.6E-39 1.2E-43 325.6 20.0 190 538-747 2-193 (195)
303 COG4608 AppF ABC-type oligopep 100.0 4.8E-39 1E-43 329.9 18.7 192 538-772 5-207 (268)
304 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.4E-38 2.9E-43 329.7 21.8 196 538-758 23-224 (224)
305 PRK13549 xylose transporter AT 100.0 8.7E-39 1.9E-43 369.7 21.2 221 537-764 259-493 (506)
306 TIGR01257 rim_protein retinal- 100.0 5.7E-38 1.2E-42 396.5 26.9 219 536-767 927-1151(2272)
307 COG4172 ABC-type uncharacteriz 100.0 8.5E-38 1.8E-42 329.8 22.8 225 537-772 276-524 (534)
308 COG0411 LivG ABC-type branched 100.0 2.4E-38 5.3E-43 318.1 17.9 219 538-766 5-240 (250)
309 PRK09700 D-allose transporter 100.0 3.8E-38 8.2E-43 364.9 21.6 209 537-760 265-493 (510)
310 TIGR01187 potA spermidine/putr 100.0 4.5E-38 9.8E-43 343.0 20.8 183 571-766 1-191 (325)
311 COG4559 ABC-type hemin transpo 100.0 1E-37 2.2E-42 305.0 20.7 215 538-766 2-231 (259)
312 TIGR00956 3a01205 Pleiotropic 100.0 4.6E-38 1E-42 397.2 23.2 213 537-761 759-989 (1394)
313 COG1129 MglA ABC-type sugar tr 100.0 2.8E-37 6.1E-42 343.0 23.9 212 538-759 9-228 (500)
314 TIGR01257 rim_protein retinal- 100.0 2.8E-35 6E-40 372.3 44.5 219 537-768 1937-2162(2272)
315 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-37 2.7E-42 359.7 21.4 215 537-761 257-488 (500)
316 COG1137 YhbG ABC-type (unclass 100.0 2.1E-38 4.5E-43 307.2 12.2 222 537-766 4-229 (243)
317 COG4598 HisP ABC-type histidin 100.0 5.9E-38 1.3E-42 298.4 14.9 212 537-766 6-242 (256)
318 PRK15177 Vi polysaccharide exp 100.0 1.7E-37 3.7E-42 318.9 19.6 194 555-771 2-198 (213)
319 COG4181 Predicted ABC-type tra 100.0 1.8E-37 3.8E-42 293.3 17.7 209 538-757 7-227 (228)
320 COG4525 TauB ABC-type taurine 100.0 1.7E-37 3.6E-42 299.3 17.8 205 538-759 4-218 (259)
321 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.4E-37 7.4E-42 323.2 21.4 196 545-765 1-207 (246)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.2E-37 7E-42 359.9 22.9 211 537-765 4-248 (552)
323 PRK10762 D-ribose transporter 100.0 1.8E-37 3.9E-42 358.4 20.3 212 537-763 257-482 (501)
324 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.3E-37 2.9E-42 327.7 17.1 202 541-758 4-220 (255)
325 PRK15064 ABC transporter ATP-b 100.0 7.3E-37 1.6E-41 355.6 25.1 204 537-768 319-528 (530)
326 PRK11288 araG L-arabinose tran 100.0 2.1E-37 4.6E-42 357.7 20.0 211 537-764 257-484 (501)
327 COG4148 ModC ABC-type molybdat 100.0 2E-37 4.2E-42 313.8 17.0 198 557-767 15-220 (352)
328 PRK15064 ABC transporter ATP-b 100.0 8.4E-37 1.8E-41 355.1 24.9 210 538-765 2-242 (530)
329 PRK11819 putative ABC transpor 100.0 5.9E-37 1.3E-41 357.9 23.7 211 537-765 6-250 (556)
330 COG4161 ArtP ABC-type arginine 100.0 3.7E-37 8E-42 288.1 17.1 213 537-764 2-229 (242)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 9.3E-37 2E-41 294.1 19.4 143 538-753 1-144 (144)
332 PRK15439 autoinducer 2 ABC tra 100.0 2.5E-36 5.5E-41 349.2 20.2 212 537-764 268-491 (510)
333 PRK10938 putative molybdenum t 100.0 2.7E-36 5.7E-41 347.9 19.8 208 537-757 260-484 (490)
334 COG3845 ABC-type uncharacteriz 100.0 1.9E-35 4.2E-40 321.6 23.4 209 537-757 4-221 (501)
335 PRK10982 galactose/methyl gala 100.0 1.8E-35 3.8E-40 341.0 23.2 213 537-761 250-476 (491)
336 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.5E-35 7.6E-40 287.3 20.1 154 540-753 2-157 (157)
337 PLN03140 ABC transporter G fam 100.0 5.5E-35 1.2E-39 368.1 25.6 215 536-761 866-1106(1470)
338 PRK11819 putative ABC transpor 100.0 1E-34 2.2E-39 339.0 25.2 204 537-766 324-534 (556)
339 cd03222 ABC_RNaseL_inhibitor T 100.0 4.3E-35 9.4E-40 291.0 17.4 146 541-756 4-152 (177)
340 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.8E-34 3.9E-39 336.9 25.0 204 537-766 322-532 (552)
341 PLN03073 ABC transporter F fam 100.0 1.9E-34 4.1E-39 342.1 25.4 201 537-763 508-712 (718)
342 PRK11147 ABC transporter ATPas 100.0 1.7E-34 3.6E-39 341.9 24.6 203 537-765 319-528 (635)
343 PRK10636 putative ABC transpor 100.0 2.5E-34 5.5E-39 339.7 23.8 200 537-764 312-516 (638)
344 cd03238 ABC_UvrA The excision 100.0 2.4E-34 5.1E-39 285.5 19.2 161 552-758 7-176 (176)
345 COG4604 CeuD ABC-type enteroch 100.0 6.4E-35 1.4E-39 282.1 13.9 215 538-766 2-226 (252)
346 PRK13409 putative ATPase RIL; 100.0 2.9E-34 6.3E-39 334.9 21.8 192 537-759 340-536 (590)
347 TIGR00956 3a01205 Pleiotropic 100.0 2.7E-34 5.9E-39 363.1 20.9 210 552-764 73-299 (1394)
348 PRK10636 putative ABC transpor 100.0 2.3E-33 4.9E-38 331.7 24.2 210 538-765 2-236 (638)
349 PLN03140 ABC transporter G fam 100.0 8.5E-34 1.8E-38 357.4 18.6 211 552-765 177-427 (1470)
350 COG4172 ABC-type uncharacteriz 100.0 2.6E-33 5.7E-38 295.9 19.0 229 538-774 7-257 (534)
351 PRK11147 ABC transporter ATPas 100.0 6.3E-33 1.4E-37 328.4 24.4 209 538-766 4-244 (635)
352 COG1101 PhnK ABC-type uncharac 100.0 1.5E-33 3.3E-38 276.3 15.1 207 551-757 17-230 (263)
353 COG1119 ModF ABC-type molybden 100.0 1.3E-32 2.9E-37 276.6 18.1 212 537-759 31-256 (257)
354 PRK13409 putative ATPase RIL; 100.0 3.1E-33 6.6E-38 326.3 15.1 192 542-752 78-287 (590)
355 COG4167 SapF ABC-type antimicr 100.0 1.1E-32 2.4E-37 263.1 15.7 227 538-777 5-253 (267)
356 COG4136 ABC-type uncharacteriz 100.0 2.6E-32 5.6E-37 252.9 15.0 194 538-747 3-205 (213)
357 PF00005 ABC_tran: ABC transpo 100.0 1.1E-32 2.5E-37 262.8 12.1 136 556-707 1-137 (137)
358 COG4152 ABC-type uncharacteriz 100.0 7.7E-32 1.7E-36 268.8 16.9 217 537-768 2-222 (300)
359 PLN03073 ABC transporter F fam 100.0 8.2E-32 1.8E-36 319.7 20.2 221 537-765 177-431 (718)
360 KOG0061 Transporter, ABC super 100.0 1.2E-31 2.5E-36 313.7 19.0 219 536-765 24-260 (613)
361 COG0488 Uup ATPase components 100.0 3.2E-31 7E-36 302.1 21.2 205 537-766 3-241 (530)
362 COG0396 sufC Cysteine desulfur 100.0 1.3E-30 2.7E-35 259.3 22.1 216 538-765 4-233 (251)
363 KOG0064 Peroxisomal long-chain 100.0 9.7E-28 2.1E-32 260.2 46.0 468 239-750 182-682 (728)
364 COG1134 TagH ABC-type polysacc 100.0 6.8E-31 1.5E-35 264.7 20.2 190 552-766 39-237 (249)
365 COG4674 Uncharacterized ABC-ty 100.0 5.3E-30 1.1E-34 247.7 15.9 215 538-766 6-236 (249)
366 cd03270 ABC_UvrA_I The excisio 100.0 4.9E-30 1.1E-34 266.0 16.9 191 552-758 7-226 (226)
367 cd03271 ABC_UvrA_II The excisi 100.0 3.7E-30 7.9E-35 270.4 14.8 193 555-760 10-261 (261)
368 COG4586 ABC-type uncharacteriz 100.0 2.5E-29 5.5E-34 254.7 13.8 213 553-773 37-254 (325)
369 cd03278 ABC_SMC_barmotin Barmo 100.0 4.3E-29 9.2E-34 253.3 14.4 164 557-751 14-190 (197)
370 COG0488 Uup ATPase components 100.0 2.8E-28 6.1E-33 278.0 22.8 204 537-768 321-528 (530)
371 COG4133 CcmA ABC-type transpor 100.0 4.7E-29 1E-33 240.7 12.9 197 538-750 3-202 (209)
372 COG4107 PhnK ABC-type phosphon 100.0 1.9E-28 4.1E-33 232.4 15.8 225 538-775 7-252 (258)
373 cd03279 ABC_sbcCD SbcCD and ot 100.0 1.8E-28 4E-33 252.0 13.0 192 537-754 5-211 (213)
374 PF00664 ABC_membrane: ABC tra 100.0 9.1E-25 2E-29 228.1 39.7 270 178-449 2-275 (275)
375 cd03272 ABC_SMC3_euk Eukaryoti 100.0 6.4E-28 1.4E-32 252.9 14.3 191 538-750 4-234 (243)
376 COG4778 PhnL ABC-type phosphon 99.9 3.1E-27 6.7E-32 223.5 11.8 203 538-751 5-227 (235)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.4E-26 5.2E-31 242.3 14.6 183 566-750 25-242 (251)
378 KOG0059 Lipid exporter ABCA1 a 99.9 3.9E-26 8.5E-31 278.2 17.3 223 536-771 563-793 (885)
379 cd03240 ABC_Rad50 The catalyti 99.9 7.8E-26 1.7E-30 230.8 13.5 163 560-752 17-198 (204)
380 PRK00349 uvrA excinuclease ABC 99.9 2.4E-25 5.2E-30 268.4 19.5 104 667-770 818-932 (943)
381 PRK00635 excinuclease ABC subu 99.9 4.8E-25 1E-29 275.7 22.0 215 537-767 600-908 (1809)
382 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.1E-26 4.7E-31 236.1 7.4 185 537-751 5-204 (212)
383 COG4138 BtuD ABC-type cobalami 99.9 1.5E-25 3.2E-30 213.1 6.5 209 538-766 4-222 (248)
384 KOG0065 Pleiotropic drug resis 99.9 4.8E-25 1.1E-29 262.8 12.0 212 539-761 789-1017(1391)
385 COG1129 MglA ABC-type sugar tr 99.9 5.4E-24 1.2E-28 237.2 19.3 208 538-757 264-482 (500)
386 TIGR00630 uvra excinuclease AB 99.9 6.8E-24 1.5E-28 255.4 21.1 97 667-763 816-923 (924)
387 KOG0927 Predicted transporter 99.9 7.6E-25 1.7E-29 239.8 10.9 199 537-761 389-592 (614)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.2E-24 2.6E-29 228.9 11.1 185 567-751 23-233 (247)
389 COG3845 ABC-type uncharacteriz 99.9 1.9E-22 4.2E-27 220.4 19.9 218 537-762 257-489 (501)
390 cd01128 rho_factor Transcripti 99.9 1.5E-22 3.3E-27 211.4 11.5 199 561-778 11-230 (249)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.9 7.2E-22 1.6E-26 200.6 12.5 170 556-753 12-192 (198)
392 KOG0062 ATPase component of AB 99.9 3.6E-21 7.8E-26 210.1 15.5 195 537-756 362-559 (582)
393 KOG0927 Predicted transporter 99.9 7.9E-21 1.7E-25 208.5 18.0 223 534-766 72-310 (614)
394 cd03239 ABC_SMC_head The struc 99.8 7.6E-21 1.6E-25 189.7 14.5 85 661-751 83-172 (178)
395 COG1245 Predicted ATPase, RNas 99.8 3E-20 6.5E-25 199.9 15.1 171 555-751 351-531 (591)
396 KOG0066 eIF2-interacting prote 99.8 2.5E-20 5.5E-25 198.3 14.1 198 537-762 586-788 (807)
397 KOG0062 ATPase component of AB 99.8 8.6E-21 1.9E-25 207.1 10.7 204 535-766 78-286 (582)
398 COG4170 SapD ABC-type antimicr 99.8 9E-20 1.9E-24 178.3 12.5 221 540-772 6-256 (330)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.8 4.9E-20 1.1E-24 189.2 10.8 180 557-753 15-211 (213)
400 cd03241 ABC_RecN RecN ATPase i 99.8 3.7E-19 8E-24 190.2 15.8 77 678-754 170-250 (276)
401 KOG0065 Pleiotropic drug resis 99.8 1.8E-19 3.9E-24 215.7 14.5 209 552-765 127-351 (1391)
402 COG0178 UvrA Excinuclease ATPa 99.8 5.6E-19 1.2E-23 201.7 17.3 104 671-774 815-928 (935)
403 KOG2355 Predicted ABC-type tra 99.8 9.4E-19 2E-23 170.9 14.9 210 535-763 11-235 (291)
404 cd03280 ABC_MutS2 MutS2 homolo 99.8 3.4E-19 7.3E-24 181.5 11.7 145 556-758 17-172 (200)
405 PRK00635 excinuclease ABC subu 99.8 4.2E-18 9.1E-23 213.9 20.9 202 556-769 1506-1800(1809)
406 COG2401 ABC-type ATPase fused 99.8 3.6E-18 7.9E-23 181.8 15.6 178 553-755 396-588 (593)
407 cd03227 ABC_Class2 ABC-type Cl 99.7 1.6E-17 3.5E-22 163.4 13.6 134 561-751 16-155 (162)
408 COG1245 Predicted ATPase, RNas 99.7 5.7E-17 1.2E-21 174.9 14.8 196 542-750 79-287 (591)
409 cd03285 ABC_MSH2_euk MutS2 hom 99.7 3.8E-17 8.2E-22 168.8 11.6 153 552-759 16-175 (222)
410 cd00820 PEPCK_HprK Phosphoenol 99.7 1.3E-17 2.9E-22 150.4 6.1 76 553-636 2-77 (107)
411 cd03242 ABC_RecF RecF is a rec 99.7 2.2E-16 4.8E-21 168.3 15.0 190 557-754 13-269 (270)
412 PRK00349 uvrA excinuclease ABC 99.7 2E-16 4.3E-21 191.6 14.2 100 667-766 477-586 (943)
413 TIGR00630 uvra excinuclease AB 99.7 9.6E-17 2.1E-21 194.0 11.2 95 672-766 481-584 (924)
414 TIGR00606 rad50 rad50. This fa 99.7 3.5E-16 7.7E-21 199.1 14.1 119 625-750 1153-1289(1311)
415 cd03283 ABC_MutS-like MutS-lik 99.6 2.3E-16 5E-21 160.3 8.0 138 553-743 14-154 (199)
416 cd03243 ABC_MutS_homologs The 99.6 8.5E-16 1.9E-20 156.7 9.6 153 559-763 22-177 (202)
417 TIGR02858 spore_III_AA stage I 99.6 4.4E-15 9.4E-20 157.1 12.4 141 567-764 112-268 (270)
418 PRK00064 recF recombination pr 99.5 3.1E-13 6.8E-18 149.7 17.6 76 677-754 272-359 (361)
419 PF02463 SMC_N: RecF/RecN/SMC 99.5 1.2E-13 2.5E-18 142.8 12.6 171 557-749 16-211 (220)
420 PHA02562 46 endonuclease subun 99.5 2.6E-14 5.6E-19 168.1 8.5 106 647-754 432-555 (562)
421 cd03284 ABC_MutS1 MutS1 homolo 99.5 5E-14 1.1E-18 145.1 9.6 155 553-763 18-179 (216)
422 cd03282 ABC_MSH4_euk MutS4 hom 99.5 1.1E-13 2.4E-18 141.1 10.4 141 552-744 15-158 (204)
423 KOG0066 eIF2-interacting prote 99.5 1.2E-13 2.7E-18 147.8 9.9 199 537-761 264-495 (807)
424 KOG0063 RNAse L inhibitor, ABC 99.5 3.4E-13 7.3E-18 144.8 12.6 196 544-765 342-548 (592)
425 PRK07721 fliI flagellum-specif 99.4 4.8E-12 1E-16 142.3 17.0 178 552-761 145-339 (438)
426 PTZ00132 GTP-binding nuclear p 99.3 6E-12 1.3E-16 129.5 9.1 44 682-725 156-204 (215)
427 TIGR00634 recN DNA repair prot 99.3 8E-12 1.7E-16 146.5 10.6 77 677-753 439-519 (563)
428 PRK10869 recombination and rep 99.3 1.1E-11 2.4E-16 144.2 10.5 76 678-753 430-509 (553)
429 cd03281 ABC_MSH5_euk MutS5 hom 99.2 4.2E-11 9.2E-16 123.1 12.2 138 554-744 17-161 (213)
430 smart00534 MUTSac ATPase domai 99.2 2.3E-11 5E-16 122.4 7.0 70 673-745 56-130 (185)
431 PRK13695 putative NTPase; Prov 99.2 2.8E-11 6E-16 120.5 7.3 81 674-757 74-156 (174)
432 PRK10733 hflB ATP-dependent me 99.2 5.7E-12 1.2E-16 149.4 0.1 123 352-475 40-170 (644)
433 TIGR01069 mutS2 MutS2 family p 99.1 2.3E-10 5.1E-15 137.5 13.4 148 537-739 295-447 (771)
434 TIGR02788 VirB11 P-type DNA tr 99.1 9.5E-11 2.1E-15 127.3 8.8 143 559-764 137-280 (308)
435 PRK14079 recF recombination pr 99.1 7.4E-10 1.6E-14 122.3 14.9 75 677-756 262-345 (349)
436 cd03287 ABC_MSH3_euk MutS3 hom 99.1 2.6E-10 5.6E-15 117.7 10.3 138 553-743 18-160 (222)
437 PRK11098 microcin B17 transpor 99.1 7.7E-07 1.7E-11 99.1 38.3 270 189-475 106-395 (409)
438 COG0178 UvrA Excinuclease ATPa 99.1 5E-10 1.1E-14 129.4 12.5 108 659-767 463-579 (935)
439 PRK08533 flagellar accessory p 99.1 1.3E-09 2.8E-14 113.5 14.3 157 538-750 8-184 (230)
440 PRK13830 conjugal transfer pro 99.1 1E-09 2.2E-14 133.6 14.5 72 693-765 649-732 (818)
441 KOG0063 RNAse L inhibitor, ABC 99.1 3.7E-10 8E-15 121.7 8.8 171 564-750 98-287 (592)
442 PRK12369 putative transporter; 99.0 2.2E-06 4.9E-11 93.4 37.9 272 187-474 29-320 (326)
443 TIGR03238 dnd_assoc_3 dnd syst 99.0 1.3E-10 2.8E-15 129.4 4.6 67 554-623 20-87 (504)
444 PRK01156 chromosome segregatio 99.0 7.2E-10 1.6E-14 137.5 10.5 76 675-750 798-883 (895)
445 PF06472 ABC_membrane_2: ABC t 99.0 1.8E-06 3.9E-11 92.8 35.2 223 184-409 36-263 (281)
446 cd01124 KaiC KaiC is a circadi 99.0 3.1E-09 6.8E-14 106.5 12.1 84 667-750 60-163 (187)
447 PRK03918 chromosome segregatio 99.0 9.9E-10 2.1E-14 136.2 10.0 75 677-751 787-868 (880)
448 PRK00409 recombination and DNA 99.0 1.2E-09 2.6E-14 131.8 9.8 81 674-755 386-468 (782)
449 TIGR02168 SMC_prok_B chromosom 99.0 9.4E-10 2E-14 140.3 9.1 75 675-749 1086-1164(1179)
450 PRK00300 gmk guanylate kinase; 99.0 1.1E-09 2.3E-14 111.9 7.7 78 564-652 3-92 (205)
451 cd01131 PilT Pilus retraction 99.0 1.1E-09 2.5E-14 111.3 7.5 119 568-750 3-122 (198)
452 PF13748 ABC_membrane_3: ABC t 98.9 1.7E-06 3.6E-11 88.2 29.6 170 168-350 3-172 (237)
453 TIGR00618 sbcc exonuclease Sbc 98.9 2.5E-09 5.5E-14 134.3 10.8 77 676-752 948-1036(1042)
454 PRK06793 fliI flagellum-specif 98.9 5.8E-09 1.3E-13 116.7 11.8 167 538-759 131-305 (432)
455 smart00382 AAA ATPases associa 98.9 7.2E-08 1.6E-12 90.1 16.7 117 565-736 1-125 (148)
456 TIGR02169 SMC_prok_A chromosom 98.9 3E-09 6.6E-14 135.7 9.6 85 667-751 1057-1151(1164)
457 TIGR00767 rho transcription te 98.9 4.8E-09 1E-13 115.3 9.4 57 535-593 128-195 (415)
458 cd01120 RecA-like_NTPases RecA 98.9 1.3E-08 2.8E-13 98.8 11.3 128 569-740 2-140 (165)
459 PRK06067 flagellar accessory p 98.7 1.5E-07 3.2E-12 98.4 13.9 152 562-751 21-187 (234)
460 PRK02224 chromosome segregatio 98.7 2.4E-08 5.1E-13 123.9 9.0 77 677-753 780-870 (880)
461 cd03286 ABC_MSH6_euk MutS6 hom 98.7 9.4E-08 2E-12 98.5 11.3 139 552-743 16-159 (218)
462 PRK10246 exonuclease subunit S 98.7 4.9E-08 1.1E-12 122.3 9.6 76 676-751 947-1032(1047)
463 PRK06002 fliI flagellum-specif 98.7 4.5E-08 9.8E-13 109.7 7.9 85 536-623 138-229 (450)
464 PRK01889 GTPase RsgA; Reviewed 98.6 2.3E-08 5E-13 110.7 5.3 135 556-696 185-321 (356)
465 PRK13891 conjugal transfer pro 98.6 2.5E-07 5.3E-12 113.6 14.6 54 689-742 680-735 (852)
466 PF13304 AAA_21: AAA domain; P 98.6 6.8E-08 1.5E-12 100.0 7.4 63 678-740 236-302 (303)
467 cd01130 VirB11-like_ATPase Typ 98.6 9E-08 2E-12 96.4 7.1 98 555-655 14-121 (186)
468 PRK07196 fliI flagellum-specif 98.5 1.1E-07 2.4E-12 106.6 5.1 83 553-636 143-235 (434)
469 PRK06995 flhF flagellar biosyn 98.5 3.6E-07 7.7E-12 103.9 8.3 163 556-755 246-430 (484)
470 PF09818 ABC_ATPase: Predicted 98.5 1.3E-06 2.8E-11 96.4 12.3 173 543-756 227-418 (448)
471 TIGR01420 pilT_fam pilus retra 98.4 9.2E-07 2E-11 97.7 9.7 122 563-748 119-241 (343)
472 cd01125 repA Hexameric Replica 98.4 7.4E-07 1.6E-11 93.4 8.0 45 692-737 107-159 (239)
473 COG3910 Predicted ATPase [Gene 98.4 4.1E-06 8.9E-11 82.1 12.2 164 567-763 38-214 (233)
474 PF05992 SbmA_BacA: SbmA/BacA- 98.4 0.0038 8.1E-08 66.7 34.9 225 232-473 74-311 (315)
475 PRK08149 ATP synthase SpaL; Va 98.3 5E-07 1.1E-11 101.2 5.9 70 552-622 138-214 (428)
476 TIGR00611 recf recF protein. A 98.3 6.6E-07 1.4E-11 99.5 6.7 63 677-741 274-345 (365)
477 TIGR02655 circ_KaiC circadian 98.3 1.4E-07 3E-12 108.9 0.7 156 562-750 17-190 (484)
478 TIGR02524 dot_icm_DotB Dot/Icm 98.3 5.8E-07 1.3E-11 99.4 5.5 90 564-655 132-234 (358)
479 PRK13898 type IV secretion sys 98.3 1.2E-05 2.6E-10 98.6 16.7 190 558-751 438-709 (800)
480 TIGR00101 ureG urease accessor 98.3 1.5E-06 3.2E-11 88.5 7.2 106 568-683 3-108 (199)
481 PRK10078 ribose 1,5-bisphospho 98.3 1E-06 2.3E-11 88.6 6.0 55 566-623 2-56 (186)
482 cd02023 UMPK Uridine monophosp 98.3 1E-06 2.2E-11 89.5 5.9 108 568-711 1-113 (198)
483 TIGR03263 guanyl_kin guanylate 98.3 5.3E-07 1.2E-11 90.0 3.7 77 566-653 1-89 (180)
484 TIGR01026 fliI_yscN ATPase Fli 98.3 6.4E-06 1.4E-10 93.2 12.4 184 552-762 150-345 (440)
485 PRK09825 idnK D-gluconate kina 98.2 9.8E-07 2.1E-11 88.1 4.6 65 565-635 2-68 (176)
486 PRK09862 putative ATP-dependen 98.2 5.1E-06 1.1E-10 95.3 10.8 64 540-606 187-250 (506)
487 cd00071 GMPK Guanosine monopho 98.2 6.1E-07 1.3E-11 85.8 2.7 73 569-652 2-87 (137)
488 PLN03210 Resistant to P. syrin 98.2 4.6E-06 1E-10 106.2 9.8 44 559-602 200-244 (1153)
489 cd00009 AAA The AAA+ (ATPases 98.1 1.7E-05 3.8E-10 74.6 10.9 54 684-738 72-131 (151)
490 TIGR03881 KaiC_arch_4 KaiC dom 98.1 3E-06 6.5E-11 88.1 6.1 41 562-602 16-57 (229)
491 PLN02796 D-glycerate 3-kinase 98.1 8.8E-07 1.9E-11 96.2 2.1 62 553-614 79-151 (347)
492 TIGR02322 phosphon_PhnN phosph 98.1 4.5E-06 9.7E-11 83.3 6.8 61 566-627 1-77 (179)
493 PRK15494 era GTPase Era; Provi 98.1 2.2E-06 4.8E-11 94.5 4.3 56 533-590 14-76 (339)
494 TIGR02680 conserved hypothetic 98.1 5E-06 1.1E-10 106.7 7.9 61 675-737 1244-1316(1353)
495 cd01123 Rad51_DMC1_radA Rad51_ 98.0 1.4E-05 3.1E-10 83.3 8.7 80 563-651 16-102 (235)
496 TIGR02903 spore_lon_C ATP-depe 98.0 2.4E-05 5.2E-10 92.8 10.9 109 566-723 175-291 (615)
497 PRK05480 uridine/cytidine kina 98.0 1E-05 2.2E-10 83.0 6.8 70 564-655 4-78 (209)
498 PRK03846 adenylylsulfate kinas 98.0 4.4E-06 9.5E-11 85.0 4.0 56 564-623 22-78 (198)
499 TIGR00235 udk uridine kinase. 98.0 3.5E-06 7.6E-11 86.3 3.1 29 564-592 4-32 (207)
500 COG0419 SbcC ATPase involved i 98.0 1.8E-05 3.8E-10 98.5 9.6 77 676-752 813-898 (908)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-123 Score=1044.14 Aligned_cols=572 Identities=38% Similarity=0.552 Sum_probs=535.6
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 161 ITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIG-ARP-EPLWKLLSKVGLLYALEPIFTVIFVMNM 238 (782)
Q Consensus 161 ~~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~-~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (782)
..++.++.+.+++++++..+++++++..+..+..|.+++.++|.+.. .+. ..+......+.+++++.+++..++.+++
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999998876 222 2344555666777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHH
Q 003981 239 NTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQL 318 (782)
Q Consensus 239 ~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~L 318 (782)
.+.++++..++|.++|+++++++.+|||++.+||++||+++|+..+.+.++.++. ..+.++++.++++++|++++|+|
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls--~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLS--DGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999886 47899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 319 APILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTF 398 (782)
Q Consensus 319 ali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 398 (782)
+++.++.+|+++++..+|.++.++..++.+++.++.++...|.+++|||||+|+.|+.+.+||.+..++..+...|.+..
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 003981 399 KSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEI 478 (782)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~ 478 (782)
..++.....+..++..+.++++|++++..|+||.|.+++|+.|...+..++..++.+++++.++..|.+|++|+++.+|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999987542
Q ss_pred chhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceee
Q 003981 479 DDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNG 558 (782)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~ 558 (782)
-+.. + ...+....|.|+|+||+|+||.+|+.+||+|
T Consensus 451 i~~~--G------------------------------------------~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~ 486 (716)
T KOG0058|consen 451 IPLT--G------------------------------------------TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKN 486 (716)
T ss_pred CCCC--C------------------------------------------ccccccccceEEEEEeeeecCCCCCchhhcC
Confidence 1110 0 0011135789999999999999999999999
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCC
Q 003981 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638 (782)
Q Consensus 559 Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~ 638 (782)
+||+|+|||.||+||||||||||+++||.|||+|++|+|++||+||+++|..+||++||+|.|||.||++||+|||+||.
T Consensus 487 lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~ 566 (716)
T KOG0058|consen 487 LSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGL 566 (716)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q 003981 639 PDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQ 718 (782)
Q Consensus 639 p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~ 718 (782)
+ ++++|||++||++|++||||.++|+||||.|||+|..|||||||||||||||+|||.||||||||||||+++|..|+
T Consensus 567 ~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq 644 (716)
T KOG0058|consen 567 D--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQ 644 (716)
T ss_pred C--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHH
Confidence 5 79999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhcc-CchHHHHHHhhhh
Q 003981 719 DALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARK-GQYASLVCTQRLA 780 (782)
Q Consensus 719 ~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~-g~Y~~L~~~q~~~ 780 (782)
++|++.++++|||+||||||||++||+|+|+|+|+|+|.|+|+||+++. |.|++|++.|...
T Consensus 645 ~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 645 EALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred HHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999987 8999999999765
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5e-112 Score=991.32 Aligned_cols=606 Identities=29% Similarity=0.407 Sum_probs=548.3
Q ss_pred cceeeecCCCCCCCc---CCCCcccccCC----CCC-ccCCCCCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003981 123 ITCAYVSGPASDPIV---SEPDPRINDSV----SPS-EKVHSPPNLITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSM 194 (782)
Q Consensus 123 ~~~~~~~~~~~~~~~---~~p~~~~~~~~----~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~ 194 (782)
+++.++.||+.|+.. .|..+.|. +. .+. .+...+.++..+..++..++++++.+...++.+++..+++++.
T Consensus 95 ~~~~~v~dp~~g~~~l~~~e~~~~~t-g~~l~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~ 173 (709)
T COG2274 95 KNKVVVLDPAKGIRRLSLEEFEKLWT-GIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALAT 173 (709)
T ss_pred CCeEEEEeCCCCcEEcCHHHHHHhhh-eeEEEEecccccccccccccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 347799999888864 34444454 11 011 1111223334556788899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHH
Q 003981 195 PIFSGRFFEVLIGA-RPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGEL 273 (782)
Q Consensus 195 P~~~~~~id~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l 273 (782)
|++++.++|.++.. +...++.+...++++++...++..++.++..+.+.++...+..++|+|++++|+.||+++++||+
T Consensus 174 p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~ 253 (709)
T COG2274 174 PLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEI 253 (709)
T ss_pred HHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhH
Confidence 99999999998854 34567776677777788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003981 274 SGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQAS 353 (782)
Q Consensus 274 ~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (782)
++|+ +|.+.++++++..+. ..+..+.++++++++|++++|+|++++++.+++.++...++.+..++..++.....++
T Consensus 254 ~sR~-~el~~Ir~flt~~~l--~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~ 330 (709)
T COG2274 254 ISRV-RELEQIREFLTGSIL--TLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAE 330 (709)
T ss_pred HHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 789999999998876 3567777889999999999999999999998888888888888888888888888999
Q ss_pred HHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 003981 354 IADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVG 433 (782)
Q Consensus 354 ~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G 433 (782)
.++.+.|+++||++||+.+.|.++..+|++...++.+.+.+..+.......+..++..++.++++|+|+++|++|++|+|
T Consensus 331 ~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG 410 (709)
T COG2274 331 QQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLG 410 (709)
T ss_pred HhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccccccccchhhhhhhhhccCCCCccc
Q 003981 434 IVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQ 513 (782)
Q Consensus 434 ~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (782)
++++|.++...+..|+..+++.+.+++++..+.+|+.++++.+++++...
T Consensus 411 ~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~------------------------------ 460 (709)
T COG2274 411 QLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK------------------------------ 460 (709)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc------------------------------
Confidence 99999999999999999999999999999999999999999876432200
Q ss_pred ccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 003981 514 HLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT 593 (782)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~ 593 (782)
.....++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|+|+|+|+
T Consensus 461 -------------~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 461 -------------TLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred -------------ccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 001223467899999999999854 458999999999999999999999999999999999999999
Q ss_pred ccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCcccccc
Q 003981 594 GGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVG 673 (782)
Q Consensus 594 ~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VG 673 (782)
+|+|++||.|+.+++++++|++|+||+||++||+|||||||++|.| ++++||+++||+.|++||||++||+||||+||
T Consensus 527 ~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p--~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 527 QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred CceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999999999999966 58999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCE
Q 003981 674 ERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGR 753 (782)
Q Consensus 674 E~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~ 753 (782)
|+|.+|||||||||+|||||++||+||||||||||||++||++|.++|.+..++||+|+||||++++++||+|+|||+|+
T Consensus 605 E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gk 684 (709)
T COG2274 605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGK 684 (709)
T ss_pred cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCHHHHHhccCchHHHHHHhh
Q 003981 754 IAELGTHFELLARKGQYASLVCTQR 778 (782)
Q Consensus 754 Ive~Gth~eLl~~~g~Y~~L~~~q~ 778 (782)
|+|+|||+||++.+|.|+++|..|.
T Consensus 685 iv~~gs~~ell~~~g~y~~l~~~q~ 709 (709)
T COG2274 685 IVEQGSHEELLAQGGLYARLYQQQE 709 (709)
T ss_pred eeccCCHHHHHHhcChHHHHHhccC
Confidence 9999999999999999999998874
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.5e-112 Score=1001.13 Aligned_cols=571 Identities=35% Similarity=0.450 Sum_probs=508.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 003981 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLW----KLLSKVGLLYALEPIFTVIFVMN 237 (782)
Q Consensus 162 ~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~ 237 (782)
.+..+.++.++.++.++++.+++++..+...+..++++.++..+...+...+. .+..+++++.+...+..++++++
T Consensus 651 s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~ 730 (1228)
T KOG0055|consen 651 SFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYF 730 (1228)
T ss_pred cHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567788888888888887777666666667777888777643322111 23333444555566677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhc--cChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 003981 238 MNTVWEKVMSIVKAQIFRRVLIQKAEFFDR--YKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIA 315 (782)
Q Consensus 238 ~~~~~~~~~~~lr~~lf~kll~lp~~~f~~--~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~ 315 (782)
+..+++++..++|..+|+++++++.+|||+ ++ |.|.+|+.+|...++..+...+. .++.++..+++++++.|+++
T Consensus 731 f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~--~vv~~~~~~~~~iiiaf~~~ 807 (1228)
T KOG0055|consen 731 FGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLS--LVVQNIAAVIIGIIIAFIYG 807 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999995 56 99999999999999999999886 46788888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 003981 316 PQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKL 395 (782)
Q Consensus 316 ~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~ 395 (782)
|+|+++++...|++++......+......++..+...+.+....|++++||||++|+.|+++.+.|.+..++..+...+.
T Consensus 808 W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~ 887 (1228)
T KOG0055|consen 808 WRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKR 887 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888877888888888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003981 396 GTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILST 475 (782)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~ 475 (782)
+.+.++...+.+.+.+...++.+|+|++++.+|.+++.+++-.+..+..-...+.......+++..+..|+.+|+++++.
T Consensus 888 ~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr 967 (1228)
T KOG0055|consen 888 GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDR 967 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999888766665555666677788899999999999999999997
Q ss_pred CccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccc
Q 003981 476 TEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVI 555 (782)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v 555 (782)
++.-+.. ++ .....+...|+|+|+||+|+||++|+.+|
T Consensus 968 ~~~i~~~---------~~---------------------------------~~~~~~~~~G~I~~~~V~F~YPsRP~~~I 1005 (1228)
T KOG0055|consen 968 KPTIDPD---------ST---------------------------------SGGKLPNVKGDIEFRNVSFAYPTRPDVPV 1005 (1228)
T ss_pred CCCCCCC---------CC---------------------------------CCCccccceeEEEEeeeEeeCCCCCCchh
Confidence 6521110 00 01112346799999999999999999999
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHH
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~ 635 (782)
|+|+||+|++||++|+||||||||||++.||.|||+|++|.|.|||+||+++++++||++||+|+|||.||++||||||+
T Consensus 1006 l~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~ 1085 (1228)
T KOG0055|consen 1006 LNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIA 1085 (1228)
T ss_pred hcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 003981 636 YGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSER 715 (782)
Q Consensus 636 ~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~ 715 (782)
||. ++++++||++|||.|++|+||.+||+||||.|||+|.+||||||||||||||++|||+||||||||||||+++|+
T Consensus 1086 YG~--~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSEr 1163 (1228)
T KOG0055|consen 1086 YGS--EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 (1228)
T ss_pred ccC--CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH
Confidence 994 349999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhhh
Q 003981 716 LVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQRL 779 (782)
Q Consensus 716 ~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 779 (782)
.||++|++.+.|||+|+||||||||++||.|.|+++|+|+|+|||+||++++|.|++|++.|..
T Consensus 1164 vVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1164 VVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQSS 1227 (1228)
T ss_pred HHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999864
No 4
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.6e-102 Score=915.66 Aligned_cols=566 Identities=23% Similarity=0.284 Sum_probs=492.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 163 WGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIG-A-RPEPLWKLLSKVGLLYALEPIFTVIFVMNMNT 240 (782)
Q Consensus 163 ~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
++.++++++++++.+++++++.++..++.++.|++++.++|.+.. + +...++.+...+++++++..++.++..+...+
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFK 89 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888999999999999999999999999999999999998752 2 22233333344445556667777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 003981 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (782)
Q Consensus 241 ~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lal 320 (782)
.+.++..++|.++|+|++++|.++|+++++|++++|+++|++.+++++...+. ..+..++.+++.++++++++|++++
T Consensus 90 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~l 167 (588)
T PRK11174 90 AGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLP--QMALAVLVPLLILIAVFPINWAAGL 167 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987765 3566677788888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (782)
Q Consensus 321 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (782)
++++++|+.++...++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|++..+++++...+..+...
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK11174 168 ILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAF 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777767677777888888888888899999999999999999999999999999999999999999888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGIV---------ASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINS 471 (782)
Q Consensus 401 ~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l---------~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ 471 (782)
....+..++..+..+++++++++.+. |.+|+|.+ ++++.+...+..|+..+...+..++++.++.+|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 248 LSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555556655543 77887754 333466678889999999999999999999999999
Q ss_pred HhcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCC
Q 003981 472 ILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRP 551 (782)
Q Consensus 472 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~ 551 (782)
+++.+++++. .. ....+....++|+|+||+|.|++
T Consensus 327 ~l~~~~~~~~----------~~---------------------------------~~~~~~~~~~~i~~~~vsf~~~~-- 361 (588)
T PRK11174 327 FLETPLAHPQ----------QG---------------------------------EKELASNDPVTIEAEDLEILSPD-- 361 (588)
T ss_pred HHcCCCcccC----------CC---------------------------------ccccCCCCCceEEEEeeEEeccC--
Confidence 9986532110 00 00000012346999999998863
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHH
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIr 631 (782)
++++|+|+||+|+|||++||||+||||||||+++|+|+| |++|+|++||+|+++++.+++|++|+||||||+||+||||
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH
Confidence 467999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 003981 632 ENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDA 711 (782)
Q Consensus 632 eNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~ 711 (782)
|||+||+| ++++||+++||+.|+++|||.+||+||||.|||+|.+|||||||||+|||||++||+||||||||||||+
T Consensus 441 eNI~~g~~--~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~ 518 (588)
T PRK11174 441 DNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDA 518 (588)
T ss_pred HHhhcCCC--CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 99999965 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhhh
Q 003981 712 VSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQRL 779 (782)
Q Consensus 712 ~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 779 (782)
+||+.|+++|+++.++||+|+||||++++++||+|+||++|+|+|+|+|+||++++|.|+++++.|..
T Consensus 519 ~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~ 586 (588)
T PRK11174 519 HSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQE 586 (588)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHhhc
Confidence 99999999999998999999999999999999999999999999999999999999999999998864
No 5
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.4e-101 Score=903.21 Aligned_cols=563 Identities=37% Similarity=0.551 Sum_probs=505.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 163 WGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVW 242 (782)
Q Consensus 163 ~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (782)
++.++.+.+ ++ .+.++.++.++..++.+..|++++.++|.+. ......+.....+++++++..++.+...+......
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLG 80 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666 67 8888888888899999999999999999887 22233444444445555566667777777777888
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003981 243 EKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIL 322 (782)
Q Consensus 243 ~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~ 322 (782)
.+...++|.++|+|++++|+++|+++++|++++|+++|++.++.++..... .....++.+++.+++++.++|.+++++
T Consensus 81 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~~ 158 (567)
T COG1132 81 QKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLV--LVFTSILLLIGSLVLLFSLSWRLALIL 158 (567)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999987643 233367788889999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 323 GVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLN 402 (782)
Q Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (782)
++.++++.+...++.++.++..+..++..+++++.+.|.++|+++||+|+.|+.+.++|.+..+...+...+..+..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (567)
T COG1132 159 LLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALL 238 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777777777788888889999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Q 003981 403 ESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDAL 482 (782)
Q Consensus 403 ~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~ 482 (782)
.++..++..+..++++++|++++..|.+++|.+++|+.+...+..|+..+...+..++++.++.+|+.++++.++....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~- 317 (567)
T COG1132 239 APLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED- 317 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC-
Confidence 8888899999999999999999999999999999999999999999999999999999999999999999987432110
Q ss_pred hcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEE
Q 003981 483 ANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLT 562 (782)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~ 562 (782)
. . .......++|+|+||+|+|++ ++++|+|+||+
T Consensus 318 ----------~---~-------------------------------~~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~ 351 (567)
T COG1132 318 ----------P---P-------------------------------DPLKDTIGSIEFENVSFSYPG--KKPVLKDISFS 351 (567)
T ss_pred ----------C---C-------------------------------CCCCCCCCeEEEEEEEEEcCC--CCccccCceEE
Confidence 0 0 001123467999999999973 56899999999
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN 642 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~ 642 (782)
|+|||++|||||||||||||++||+|+|+|++|+|++||+||++++.++||++|++|||||+||+|||+|||+||+| +
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~--~ 429 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP--D 429 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976 4
Q ss_pred CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 003981 643 VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALN 722 (782)
Q Consensus 643 ~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~ 722 (782)
+++||+++||+.|++||||+++|+||||+|||+|.+||||||||||||||++||||||||||||||||++||+.|+++++
T Consensus 430 at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~ 509 (567)
T COG1132 430 ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALK 509 (567)
T ss_pred CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhhh
Q 003981 723 HLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQRL 779 (782)
Q Consensus 723 ~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 779 (782)
++.++||+|+||||++|+++||+|+|||+|+|+|.|+|+||++++|.|++||+.|..
T Consensus 510 ~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~~ 566 (567)
T COG1132 510 KLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGG 566 (567)
T ss_pred HHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhhc
Confidence 988999999999999999999999999999999999999999999999999998863
No 6
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.3e-100 Score=915.57 Aligned_cols=600 Identities=26% Similarity=0.308 Sum_probs=518.2
Q ss_pred cceeeecCCCCCCCcCCCCcccccCCC----CCccCCCCCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 123 ITCAYVSGPASDPIVSEPDPRINDSVS----PSEKVHSPPNLITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFS 198 (782)
Q Consensus 123 ~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~ 198 (782)
.+++++.||+.|+...-+..+|++... ......+ ++...+++++..++++++.+...+++.++..++.++.|+++
T Consensus 81 ~~~~~i~dP~~g~~~~~~~~e~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~ 159 (686)
T TIGR03797 81 RGGYEIFDPATGTRRRVDAAMAATLAPEAYMFYRPLPD-KALGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIAT 159 (686)
T ss_pred CCEEEEECCCCCCCcccCHHHHHhcCCEEEEEecCCcc-ccccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999863233333322100 0000111 11223334443378888999999999999999999999999
Q ss_pred HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHH
Q 003981 199 GRFFEVLIGAR-PEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLL 277 (782)
Q Consensus 199 ~~~id~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srl 277 (782)
+.++|.++... ...++.+.+.+++++++..++.++..+...+++.++..++|..+|+|++++|+.||+++++|++++|+
T Consensus 160 ~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~ 239 (686)
T TIGR03797 160 GILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRA 239 (686)
T ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHH
Confidence 99999887533 33455555555556666777788888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003981 278 TSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADC 357 (782)
Q Consensus 278 t~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (782)
+ |++.+++++...+.. .+..+..++++++++++++|++++++++++++..++..++.++.++..++..+..++.++.
T Consensus 240 ~-~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (686)
T TIGR03797 240 M-GISQIRRILSGSTLT--TLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGL 316 (686)
T ss_pred h-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 799999998876542 4555566677888899999999998877777666666777777778888888888999999
Q ss_pred HHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 003981 358 VTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVAS 437 (782)
Q Consensus 358 ~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a 437 (782)
+.|.++|+++||+++.|+.+.++|++..++..+...+..+.......+..++..+..++++++|++++.+|.+|+|.+++
T Consensus 317 ~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva 396 (686)
T TIGR03797 317 TVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLA 396 (686)
T ss_pred HHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999888888888888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccccch
Q 003981 438 FIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNM 517 (782)
Q Consensus 438 ~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (782)
+..+...+..|+..+.+.+..++++.++++|+.++++.+++.+. .
T Consensus 397 ~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-----------~------------------------ 441 (686)
T TIGR03797 397 FNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE-----------A------------------------ 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-----------C------------------------
Confidence 99999999999999999999999999999999999976432110 0
Q ss_pred hhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEE
Q 003981 518 HYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597 (782)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I 597 (782)
...+....+.|+|+||+|+|+.+ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 442 ----------~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I 510 (686)
T TIGR03797 442 ----------KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV 510 (686)
T ss_pred ----------cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 00001124679999999999743 4689999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCC
Q 003981 598 TVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGG 677 (782)
Q Consensus 598 ~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~ 677 (782)
++||+|+++++++++|++|+||||||+||+|||||||++|+| +++|++++||+.|+++|+|++||+||||+|||+|.
T Consensus 511 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~ 587 (686)
T TIGR03797 511 FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGG 587 (686)
T ss_pred EECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccccCCCC
Confidence 999999999999999999999999999999999999999954 79999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEe
Q 003981 678 LLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAEL 757 (782)
Q Consensus 678 ~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~ 757 (782)
+|||||||||+|||||++||+|||||||||+||++||+.|.++|+++ ++|+|+||||++++++||+|+|||+|+|+|.
T Consensus 588 ~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665 (686)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999986 6899999999999999999999999999999
Q ss_pred cCHHHHHhccCchHHHHHHh
Q 003981 758 GTHFELLARKGQYASLVCTQ 777 (782)
Q Consensus 758 Gth~eLl~~~g~Y~~L~~~q 777 (782)
|+|+||++++|.|+++++.|
T Consensus 666 G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 666 GTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred CCHHHHHhCCcHHHHHHHhc
Confidence 99999999999999999876
No 7
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=8.5e-101 Score=920.10 Aligned_cols=594 Identities=25% Similarity=0.363 Sum_probs=520.0
Q ss_pred cceeeecCC--CCCCCc----------------CCCCcccccCCCCCccCCCCCCchhHHHHHHHHHHhhHHHHHHHHHH
Q 003981 123 ITCAYVSGP--ASDPIV----------------SEPDPRINDSVSPSEKVHSPPNLITWGLLWSLFLKHKLRLGLSVLTL 184 (782)
Q Consensus 123 ~~~~~~~~~--~~~~~~----------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~l~~ 184 (782)
.+++++.|| +.|+.. .+|+++|++.. ++...++.++.+++++++.+...+++.
T Consensus 95 ~~~~~i~dP~~~~g~~~~~~~ef~~~~~g~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (708)
T TIGR01193 95 KNHLIIADPDPTVGITKISKEDFYEEWTGIAIFISPTPEYKPIK---------EKENSLLKFIPLITRQKKLIVNIVIAA 165 (708)
T ss_pred CCEEEEEcCCcccCCEEecHHHHHhhCCCEEEEEEecccccccc---------cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999 888752 33333333211 112446677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 003981 185 IGCTTCTLSMPIFSGRFFEVLIGARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAE 263 (782)
Q Consensus 185 l~~~~~~l~~P~~~~~~id~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~ 263 (782)
++..++.++.|++++.++|.+..... ..++.+...+++++++..++.++..++..+.+.++..++|.++|+|++++|+.
T Consensus 166 ~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~ 245 (708)
T TIGR01193 166 IIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMS 245 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998875433 23444444445556666777788888888999999999999999999999999
Q ss_pred hhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 003981 264 FFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPV 343 (782)
Q Consensus 264 ~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~~~~~~~~~~~~~~~~~~~ 343 (782)
||+++++|++++|++ |++.+++++...+. ..+..+..++++++++++++|++++++++++++++++..++.++.++.
T Consensus 246 ~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 322 (708)
T TIGR01193 246 FFSTRRTGEIVSRFT-DASSIIDALASTIL--SLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKL 322 (708)
T ss_pred HhCCCchhHHHHHhh-hHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 89999999877654 245566667777888999999999988888777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 344 FKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGS 423 (782)
Q Consensus 344 ~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~ 423 (782)
.++..+..++..+.+.|+++|+++||+++.|+.+.++|++...++.+...+..+.......+..++..+..++++++|++
T Consensus 323 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~ 402 (708)
T TIGR01193 323 NHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAY 402 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999888887777777777777888889999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccccccccchhhhhhhh
Q 003981 424 KVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLF 503 (782)
Q Consensus 424 lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (782)
++.+|.+|+|+++++..+...+..|+..+...+..++++.++++|+.++++.+++.+.. .
T Consensus 403 lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~----------~---------- 462 (708)
T TIGR01193 403 LVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK----------K---------- 462 (708)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc----------c----------
Confidence 99999999999999999999999999999999999999999999999999865432110 0
Q ss_pred hccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHH
Q 003981 504 LFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIV 583 (782)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl 583 (782)
.........|.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+
T Consensus 463 -----------------------~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLl 517 (708)
T TIGR01193 463 -----------------------KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLA 517 (708)
T ss_pred -----------------------cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHH
Confidence 00000123467999999999973 45799999999999999999999999999999
Q ss_pred HHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHh
Q 003981 584 QLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIIS 663 (782)
Q Consensus 584 ~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~ 663 (782)
++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||||||++|.+ +++++|++++||+.|+++|||.+
T Consensus 518 klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~-~~~~~~~i~~a~~~a~l~~~i~~ 596 (708)
T TIGR01193 518 KLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIEN 596 (708)
T ss_pred HHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999942 35899999999999999999999
Q ss_pred CCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhc
Q 003981 664 LPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNA 743 (782)
Q Consensus 664 LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~a 743 (782)
||+||||+|||+|.+|||||||||+||||++++|+|||||||||+||++||+.|.++|+++ +++|+|+||||+++++.|
T Consensus 597 lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~ 675 (708)
T TIGR01193 597 MPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQS 675 (708)
T ss_pred cccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999985 789999999999999999
Q ss_pred CeEEEEeCCEEEEecCHHHHHhccCchHHHHH
Q 003981 744 HQIALCSDGRIAELGTHFELLARKGQYASLVC 775 (782)
Q Consensus 744 D~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~ 775 (782)
|+|+||++|+|+|.|+|+||++++|.|+++++
T Consensus 676 D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 676 DKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred CEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 99999999999999999999999999999985
No 8
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1e-100 Score=920.15 Aligned_cols=598 Identities=26% Similarity=0.383 Sum_probs=520.4
Q ss_pred cceeeecCCCCCCCc----------------CCCCcccccCCCCCccCCCCCCchhHHHHHHHHHHhhHHHHHHHHHHHH
Q 003981 123 ITCAYVSGPASDPIV----------------SEPDPRINDSVSPSEKVHSPPNLITWGLLWSLFLKHKLRLGLSVLTLIG 186 (782)
Q Consensus 123 ~~~~~~~~~~~~~~~----------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~l~~l~ 186 (782)
.+++++.||+.|+.. .+|++++++.. ++...|+.++.+++++++.+...++++++
T Consensus 95 ~~~~~i~dP~~g~~~~~~~e~~~~~~g~~l~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 165 (710)
T TIGR03796 95 GGRVYLNDPALGPRTVSLEEFDESFTGVVLTFEPGPEFQKGG---------RKPSLLRALWRRLRGSRGALLYLLLAGLL 165 (710)
T ss_pred CCEEEEECCCCCCEEccHHHHHhhCCCeEEEEEECccccccC---------cCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999863 23333332211 12245778888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhh
Q 003981 187 CTTCTLSMPIFSGRFFEVLIGARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFF 265 (782)
Q Consensus 187 ~~~~~l~~P~~~~~~id~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f 265 (782)
..++.++.|++++.++|.++.... ..++.+...+++++++..++.++..++...++.++..++|.++|+|++++|+++|
T Consensus 166 ~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~ 245 (710)
T TIGR03796 166 LVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFF 245 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998875433 2344444444455566677778888888899999999999999999999999999
Q ss_pred hccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003981 266 DRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFK 345 (782)
Q Consensus 266 ~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~~~~~~~~~~~~~~~~~~~~~ 345 (782)
+++++|++++|+++| +.+++++...+. ..+..++.++++++++++++|++++++++.+++.+++..++.++.++..+
T Consensus 246 ~~~~~g~~~~r~~~~-~~i~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~ 322 (710)
T TIGR03796 246 AQRHAGDIASRVQLN-DQVAEFLSGQLA--TTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANR 322 (710)
T ss_pred cCCcccHHHHHhhhH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888 689999887665 35667778888889999999999998887777777777777777777888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 346 AHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKV 425 (782)
Q Consensus 346 ~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv 425 (782)
+..+..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+..+.......+..++..+..++++++|++++
T Consensus 323 ~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v 402 (710)
T TIGR03796 323 RLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRV 402 (710)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999988888888888888888888899999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccccccccchhhhhhhhhc
Q 003981 426 KAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLF 505 (782)
Q Consensus 426 ~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (782)
.+|.+|+|.++++..+...+..|+..+...+..++++.++++|+.++++.+++.+.. ......
T Consensus 403 ~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~---------~~~~~~-------- 465 (710)
T TIGR03796 403 MEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLE---------EEEAPA-------- 465 (710)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc---------cccccc--------
Confidence 999999999999999999999999999999999999999999999999875432110 000000
Q ss_pred cCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHH
Q 003981 506 DGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQL 585 (782)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~L 585 (782)
..........+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++
T Consensus 466 --------------------~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlkl 524 (710)
T TIGR03796 466 --------------------AGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKL 524 (710)
T ss_pred --------------------cccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 0000001234679999999999843 4689999999999999999999999999999999
Q ss_pred HHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCC
Q 003981 586 LARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLP 665 (782)
Q Consensus 586 L~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP 665 (782)
|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||||||+++.| +++++++++||+.++++|||.+||
T Consensus 525 L~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~--~~~~~~i~~al~~~~l~~~i~~lp 602 (710)
T TIGR03796 525 VAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRP 602 (710)
T ss_pred HhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC--CCCHHHHHHHHHHhCCHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999965 589999999999999999999999
Q ss_pred CCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCe
Q 003981 666 QGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQ 745 (782)
Q Consensus 666 ~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~ 745 (782)
+||||+|||+|.+|||||||||+|||||+++|+||||||||||||++||+.|.++|++ .++|+|+||||++++++||+
T Consensus 603 ~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~ 680 (710)
T TIGR03796 603 GGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDE 680 (710)
T ss_pred CcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCE
Confidence 9999999999999999999999999999999999999999999999999999999987 58999999999999999999
Q ss_pred EEEEeCCEEEEecCHHHHHhccCchHHHH
Q 003981 746 IALCSDGRIAELGTHFELLARKGQYASLV 774 (782)
Q Consensus 746 IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~ 774 (782)
|+|||+|+|+|.|+|+||++++|.|++|+
T Consensus 681 Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 681 IIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred EEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 99999999999999999999999999987
No 9
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-102 Score=918.51 Aligned_cols=557 Identities=37% Similarity=0.512 Sum_probs=490.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 177 LGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP----EPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQ 252 (782)
Q Consensus 177 ~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 252 (782)
+.++.+++++..+...++.++++.++|.+..... .........+..+.++..+..+++..++.+.++|...++|.+
T Consensus 30 m~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~ 109 (1228)
T KOG0055|consen 30 MILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSK 109 (1228)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444567888887764321 112222233333334445566778888999999999999999
Q ss_pred HHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003981 253 IFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVL 332 (782)
Q Consensus 253 lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~~~~~~~~ 332 (782)
+++.+|+++.+|||.+.+|++.+++++|++.+++.+++.+. ..+..+.++++++++.|++.|+|+++++.+.|++++.
T Consensus 110 yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg--~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~ 187 (1228)
T KOG0055|consen 110 YLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVG--NFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIA 187 (1228)
T ss_pred HHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987 3678888999999999999999999999999988888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 333 VAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYI 412 (782)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 412 (782)
...+.+...+...+.+.++++..+.+.|++.+||||.+|+.|+.+.++|.+..+..++...+.+.+.++...+..++.+.
T Consensus 188 g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~ 267 (1228)
T KOG0055|consen 188 GGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFA 267 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88888888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhccccccccc
Q 003981 413 SLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQ 492 (782)
Q Consensus 413 ~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~ 492 (782)
...+.+|+|+.++..+..+.|+++..+.....-...+......+..+..+.+|+.+|+++++..+..+...
T Consensus 268 ~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~--------- 338 (1228)
T KOG0055|consen 268 SYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS--------- 338 (1228)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCccc---------
Confidence 99999999999999999999988776654444455566666778889999999999999998654221100
Q ss_pred ccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEE
Q 003981 493 KHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALV 572 (782)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIV 572 (782)
. .........|.|+|+||.|+||++|+.++|+|+||+|++||+||||
T Consensus 339 ~---------------------------------~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valV 385 (1228)
T KOG0055|consen 339 K---------------------------------GGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALV 385 (1228)
T ss_pred c---------------------------------cCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEE
Confidence 0 0011123578999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHH
Q 003981 573 GSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAA 652 (782)
Q Consensus 573 G~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~ 652 (782)
|+|||||||+++||.|||+|++|+|+|||.|+++++.++||++||+|+|||.||++||+|||+||+| +++++|+.+||
T Consensus 386 G~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~--dat~~~i~~a~ 463 (1228)
T KOG0055|consen 386 GPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP--DATREEIEEAA 463 (1228)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC--cccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 59999999999
Q ss_pred HHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 003981 653 KAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLV 732 (782)
Q Consensus 653 ~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIv 732 (782)
|.|+++|||.+||+||||.|||+|..|||||||||||||||+|||+||||||||||||+++|+.||++|++.++|||+|+
T Consensus 464 k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTiv 543 (1228)
T KOG0055|consen 464 KAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIV 543 (1228)
T ss_pred HHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhhh
Q 003981 733 IAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQRL 779 (782)
Q Consensus 733 IaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 779 (782)
||||||||++||+|+||++|+|||+|+|+||++.+|.|++|++.|..
T Consensus 544 VaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~ 590 (1228)
T KOG0055|consen 544 VAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQEL 590 (1228)
T ss_pred EeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999864
No 10
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=7.6e-99 Score=901.36 Aligned_cols=555 Identities=25% Similarity=0.387 Sum_probs=496.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMNT 240 (782)
Q Consensus 162 ~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
.++.++.+++++++.+...++++++..++.++.|++++.++|.++.... ..++.+...+++++++..++.++..++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 134 PKHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788889999999999999999999999999999999998874332 334444334444455567777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 003981 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (782)
Q Consensus 241 ~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lal 320 (782)
.+.++..++|..+|+|++++|+.| +++++|++++|+ +|++.+++++...+. ..+..+..++++++++++++|++++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~l 289 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATL--TALIDLPFALLFLLVIAIIGGPLVW 289 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999998 788999999999 899999999877654 2455666677778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (782)
Q Consensus 321 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (782)
++++++++.+++..++.++.++..++..+..++..+.+.|+++|+++||++++|+.+.++|.+..+++.+...+..+...
T Consensus 290 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR03375 290 VPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSN 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777777788888888888888999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Q 003981 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (782)
Q Consensus 401 ~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~ 480 (782)
....+..++..++.++++++|++++.+|.+|+|.+++++.+...+..|+..+...+.+++++.++++|+.++++.+++.+
T Consensus 370 ~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 449 (694)
T TIGR03375 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999998754211
Q ss_pred hhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeee
Q 003981 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLN 560 (782)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Is 560 (782)
.. . .........+.|+|+||+|+|++. ++++|+|+|
T Consensus 450 ~~----------~---------------------------------~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~ 485 (694)
T TIGR03375 450 EG----------T---------------------------------RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVS 485 (694)
T ss_pred CC----------C---------------------------------CCCCCCCccceEEEEEEEEEeCCC-Cccceeeee
Confidence 10 0 000001134679999999999743 467999999
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCC
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~ 640 (782)
|+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|||+||+|||+|||++++|
T Consensus 486 l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~- 564 (694)
T TIGR03375 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP- 564 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 003981 641 ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDA 720 (782)
Q Consensus 641 ~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~ 720 (782)
++++|++++||+.++++|||.+||+||||.|||+|.+|||||||||+|||||+++|+||||||||||||++||+.|.++
T Consensus 565 -~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~ 643 (694)
T TIGR03375 565 -YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR 643 (694)
T ss_pred -CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 721 LNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 721 L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|+++.+++|+|+||||+++++.||+|+||++|+|+|+|+|+||+++
T Consensus 644 l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 644 LKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9999899999999999999999999999999999999999999875
No 11
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=8.4e-99 Score=900.42 Aligned_cols=564 Identities=35% Similarity=0.479 Sum_probs=499.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 161 ITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMN 239 (782)
Q Consensus 161 ~~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (782)
..++.++++++++++.+...+++.++..++.++.|++++.++|.+..... ..+...+.++++++++..++.++..+...
T Consensus 147 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (711)
T TIGR00958 147 DLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFN 226 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888889899999999999999999999999998874332 33333344444555556667777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Q 003981 240 TVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLA 319 (782)
Q Consensus 240 ~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~La 319 (782)
....++..++|.++|++++++|.+||+++++|++++|+++|++.+++.+...+. ..+..++.+++.+++++.++|+++
T Consensus 227 ~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~--~~l~~~~~~i~~~~~l~~~s~~l~ 304 (711)
T TIGR00958 227 YTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVN--VLLRNLVMLLGLLGFMLWLSPRLT 304 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 889999999999999999999999999999999999999999999999887765 356777788888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 320 PILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFK 399 (782)
Q Consensus 320 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (782)
+++++.+++..++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....
T Consensus 305 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (711)
T TIGR00958 305 MVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAY 384 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887777777777788888888888888888999999999999999999999999999999999999998888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 003981 400 SLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEID 479 (782)
Q Consensus 400 ~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~ 479 (782)
.....+..++..+..++++++|++++.+|.+|+|.+++++.|...+..|+..++..+.+++++.++.+|+.++++.+++.
T Consensus 385 ~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 464 (711)
T TIGR00958 385 AGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNI 464 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 66666666777777888889999999999999999999999999999999999999999999999999999999764321
Q ss_pred hhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeee
Q 003981 480 DALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGL 559 (782)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~I 559 (782)
+. . . ...+.+..+.|+|+||+|+||+++++++|+|+
T Consensus 465 ~~-----------~---~------------------------------~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~i 500 (711)
T TIGR00958 465 PL-----------T---G------------------------------TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGL 500 (711)
T ss_pred CC-----------C---C------------------------------CCCCCCCCCeEEEEEEEEECCCCCCCccccCc
Confidence 10 0 0 00011234679999999999865557899999
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCC
Q 003981 560 NLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639 (782)
Q Consensus 560 sl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p 639 (782)
||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|||+||+|||||||+||.|
T Consensus 501 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~ 580 (711)
T TIGR00958 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT 580 (711)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 003981 640 DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQD 719 (782)
Q Consensus 640 ~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~ 719 (782)
++++|++++||+.|++++||++||+||||.+||+|.+|||||||||+||||+++||+||||||||||||+++|+.|++
T Consensus 581 --~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 581 --DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred --CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHH
Q 003981 720 ALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLV 774 (782)
Q Consensus 720 ~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~ 774 (782)
. ...++||+|+||||++++++||+|+|||+|+|+|+|+|+||++++|.|++|+
T Consensus 659 -~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~lv 711 (711)
T TIGR00958 659 -S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711 (711)
T ss_pred -h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhcC
Confidence 3 3457999999999999999999999999999999999999999999999873
No 12
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.6e-98 Score=945.25 Aligned_cols=570 Identities=26% Similarity=0.361 Sum_probs=482.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP--EPLWKLLSKVGLLYALEPIFTVIFVMNMN 239 (782)
Q Consensus 162 ~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (782)
.++.++++++++++.++++++++++..++..+.|++++.++|.+..... .....+..+++++.++..++.++..++..
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~ 891 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNN 891 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888889989999999999999999999997753211 11122233334445556667778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhc--cChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhH
Q 003981 240 TVWEKVMSIVKAQIFRRVLIQKAEFFDR--YKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQ 317 (782)
Q Consensus 240 ~~~~~~~~~lr~~lf~kll~lp~~~f~~--~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~ 317 (782)
++++++..++|.++|+|++++|++||++ +++|++++|+++|++.++.++...+. .++..++.++++++++++++|.
T Consensus 892 ~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~--~~~~~i~~~i~~~~~~~~~~~~ 969 (1466)
T PTZ00265 892 VIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIV--IFTHFIVLFLVSMVMSFYFCPI 969 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 88999999999999999999887765 3566677788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH-HH-----------------HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHH
Q 003981 318 LAPILGVLVLTVSVLVAVYKRSTVPVF-KA-----------------HGLAQASIADCVTETFSAIRTVRSFGGEKRQML 379 (782)
Q Consensus 318 Lali~l~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~ 379 (782)
++++++++++ ++...+.++.+... ++ ..+..++.+..+.|+++|+++||+|+.|+.+.+
T Consensus 970 l~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~ 1046 (1466)
T PTZ00265 970 VAAVLTGTYF---IFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCN 1046 (1466)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHH
Confidence 8877543332 22222322222111 11 123355678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 380 MFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDL 459 (782)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l 459 (782)
+|.+..+...+...+...+.++...+..++..+..++++|+|++++.+|.+|+|++++++.++.....++..+...+.++
T Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~ 1126 (1466)
T PTZ00265 1047 LIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDS 1126 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888888999999999999999999999998877655556778889999999
Q ss_pred HHHHHHHHHHHHHhcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhccccccc-CCCCCcccE
Q 003981 460 RGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSV-CSFAWSGDI 538 (782)
Q Consensus 460 ~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~I 538 (782)
+++.++++|+.++++.+++.+... .. . ... .+....|.|
T Consensus 1127 ~~a~~a~~ri~~ll~~~~~~~~~~--------~~---~-----------------------------~~~~~~~~~~g~I 1166 (1466)
T PTZ00265 1127 ENAKLSFEKYYPLIIRKSNIDVRD--------NG---G-----------------------------IRIKNKNDIKGKI 1166 (1466)
T ss_pred HHHHHHHHHHHHHHCCCCcCCCCC--------Cc---c-----------------------------cccccCCCCCceE
Confidence 999999999999998643211000 00 0 000 001234689
Q ss_pred EEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--------------------------
Q 003981 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-------------------------- 592 (782)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-------------------------- 592 (782)
+|+||+|+||++++.++|+|+||+|+||+++||||+||||||||++||+|||+|
T Consensus 1167 ~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 (1466)
T PTZ00265 1167 EIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDE 1246 (1466)
T ss_pred EEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccc
Confidence 999999999876566899999999999999999999999999999999999999
Q ss_pred ----------------------------CccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCC
Q 003981 593 ----------------------------TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVS 644 (782)
Q Consensus 593 ----------------------------~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s 644 (782)
++|+|++||+|+++++.++||++||||+|||+||+|||||||+||+| +++
T Consensus 1247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~--~at 1324 (1466)
T PTZ00265 1247 EQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE--DAT 1324 (1466)
T ss_pred ccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC--CCC
Confidence 69999999999999999999999999999999999999999999965 589
Q ss_pred HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 003981 645 KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHL 724 (782)
Q Consensus 645 ~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l 724 (782)
+|||++||+.|++||||.+||+||||.|||+|.+|||||||||||||||+|||+||||||||||||++||+.|+++|+++
T Consensus 1325 ~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~ 1404 (1466)
T PTZ00265 1325 REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDI 1404 (1466)
T ss_pred HHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c--CCcEEEEEecChhHHHhcCeEEEEeC----CEEE-EecCHHHHHh-ccCchHHHHHHhh
Q 003981 725 M--KGRTTLVIAHRLSTVQNAHQIALCSD----GRIA-ELGTHFELLA-RKGQYASLVCTQR 778 (782)
Q Consensus 725 ~--~~kTvIvIaHRLsti~~aD~IiVLd~----G~Iv-e~Gth~eLl~-~~g~Y~~L~~~q~ 778 (782)
. ++||+|+||||++++++||+|+||++ |+++ |+|||+||++ ++|.|++|++.|.
T Consensus 1405 ~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~~ 1466 (1466)
T PTZ00265 1405 KDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLAK 1466 (1466)
T ss_pred hccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhcC
Confidence 4 69999999999999999999999999 9955 8999999998 5999999998873
No 13
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.6e-97 Score=884.18 Aligned_cols=605 Identities=29% Similarity=0.398 Sum_probs=522.3
Q ss_pred cceeeecCCCCC-CCc---CCCCcccccCC---CCCccCCCCCCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003981 123 ITCAYVSGPASD-PIV---SEPDPRINDSV---SPSEKVHSPPNLITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMP 195 (782)
Q Consensus 123 ~~~~~~~~~~~~-~~~---~~p~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P 195 (782)
.+++++.||+.| +.. .|....|.... .+... ..+.+...++.++++++++++.+...++++++..++.++.|
T Consensus 81 ~~~~~i~Dp~~g~~~~i~~~e~~~~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p 159 (694)
T TIGR01846 81 ANGVTIYDPPGDAPEVLSREVLEALWSGTVILLATRSV-AGKALKFGFSWFIPAIIRYRKQFREVLLISLALQLFALVTP 159 (694)
T ss_pred CCEEEEEcCCCCCceeeCHHHHHhhCCCeEEEEecCcc-ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999998 432 22222221100 01111 11112234667888888999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHH
Q 003981 196 IFSGRFFEVLIGAR-PEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELS 274 (782)
Q Consensus 196 ~~~~~~id~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~ 274 (782)
++++.++|.++... ...++.+...+++++++..++.++..++...++.++..++|.++|+|++++|+.||+++++|+++
T Consensus 160 ~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~ 239 (694)
T TIGR01846 160 LLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTV 239 (694)
T ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHH
Confidence 99999999887433 33444444444555556677788888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003981 275 GLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASI 354 (782)
Q Consensus 275 srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (782)
+|+ +|++.+++++...+.. .+..++.++++++++++++|++++++++++++.+++..++.++.++..++..+..++.
T Consensus 240 ~rl-~d~~~i~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 316 (694)
T TIGR01846 240 ARV-RELEQIRNFLTGSALT--VVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAA 316 (694)
T ss_pred HHh-hhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 7999999998766542 4455666666788899999999998877777776666677777777777777888899
Q ss_pred HHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 003981 355 ADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGI 434 (782)
Q Consensus 355 ~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~ 434 (782)
++.+.|+++|+++||++|.|+.+.++|++..+++.+...+..+.......+..++..+..++++++|++++.+|++|+|.
T Consensus 317 ~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~ 396 (694)
T TIGR01846 317 TSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQ 396 (694)
T ss_pred HHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999999999999999999888888888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccc
Q 003981 435 VASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQH 514 (782)
Q Consensus 435 l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (782)
++++..+...+..|+..+.+.+..++++.++++|+.++++.+++.+. ..
T Consensus 397 lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~----------~~--------------------- 445 (694)
T TIGR01846 397 LVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS----------AG--------------------- 445 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC----------CC---------------------
Confidence 99999999999999999999999999999999999999986532110 00
Q ss_pred cchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCc
Q 003981 515 LNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594 (782)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~ 594 (782)
........+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++
T Consensus 446 -------------~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~ 511 (694)
T TIGR01846 446 -------------LAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511 (694)
T ss_pred -------------CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 00001124679999999999743 4579999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccC
Q 003981 595 GRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGE 674 (782)
Q Consensus 595 G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE 674 (782)
|+|++||+|+++++.+++|++|+||+||+++|+|||+|||++++| +++++++++||+.++++|+|.+||+||||.+||
T Consensus 512 G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 999999999999999999999999999999999999999999965 589999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEE
Q 003981 675 RGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRI 754 (782)
Q Consensus 675 ~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~I 754 (782)
+|.+|||||||||+|||||+++|+|||||||||+||+++|+.+.++|+++.+++|+|+||||+++++.||+|+||++|+|
T Consensus 590 ~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i 669 (694)
T TIGR01846 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQI 669 (694)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEecCHHHHHhccCchHHHHHHhh
Q 003981 755 AELGTHFELLARKGQYASLVCTQR 778 (782)
Q Consensus 755 ve~Gth~eLl~~~g~Y~~L~~~q~ 778 (782)
+|+|+|+||++++|.|++|++.|.
T Consensus 670 ~~~g~~~~l~~~~~~y~~l~~~~~ 693 (694)
T TIGR01846 670 AESGRHEELLALQGLYARLWQQQS 693 (694)
T ss_pred EEeCCHHHHHHcCChHHHHHHhhc
Confidence 999999999999999999998774
No 14
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.9e-97 Score=865.65 Aligned_cols=561 Identities=25% Similarity=0.358 Sum_probs=490.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC--hhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 165 LLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLI-GARP--EPL--WKLLSKVGLLYALEPIFTVIFVMNMN 239 (782)
Q Consensus 165 ~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~-~~~~--~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (782)
.++++++++++.+++++++.++..++.+..|+++++++|... .... ..+ ......+.+++++..++.++..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999999999764 2211 011 11112233344556667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Q 003981 240 TVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLA 319 (782)
Q Consensus 240 ~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~La 319 (782)
+.+.++..++|.++|+|++++|..+|+++++|++++|+++|++.+++++...+. .++..++.++++++++++++|+++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLIS--PLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999987765 356677788888899999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 320 PILGVLVLTVSV-LVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTF 398 (782)
Q Consensus 320 li~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 398 (782)
++++++++++.+ ...++.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.++|++..+++++...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887666655444 3455667777778888888999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 003981 399 KSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFT-LTFAVQGLVNTFGDLRGTFAAVERINSILSTTE 477 (782)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~-l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~ 477 (782)
.+...++..++..+..++++++|++++ +|.+|+|.+++++.|... ...|+..+.+.+..++++.++++|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888888888888888888889999884 899999999998887644 456888889999999999999999999998653
Q ss_pred cchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCcccee
Q 003981 478 IDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILN 557 (782)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~ 557 (782)
+.+. + . ........+.|+|+||+|+|+++ ++++|+
T Consensus 323 ~~~~-----------~---~------------------------------~~~~~~~~~~i~~~~v~f~y~~~-~~~il~ 357 (574)
T PRK11160 323 EVTF-----------P---T------------------------------TSTAAADQVSLTLNNVSFTYPDQ-PQPVLK 357 (574)
T ss_pred CCCC-----------C---c------------------------------ccCCCCCCCeEEEEEEEEECCCC-CCccee
Confidence 2110 0 0 00000124579999999999743 357999
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcC
Q 003981 558 GLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYG 637 (782)
Q Consensus 558 ~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G 637 (782)
|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|||+||+|||+|||++|
T Consensus 358 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~ 437 (574)
T PRK11160 358 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLA 437 (574)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 003981 638 LPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLV 717 (782)
Q Consensus 638 ~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I 717 (782)
+| ++++|++++|++.+++++||++ |+||||+|||+|.+|||||||||+||||+++||+|||||||||+||++||+.|
T Consensus 438 ~~--~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i 514 (574)
T PRK11160 438 AP--NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQI 514 (574)
T ss_pred CC--ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 65 5899999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHH
Q 003981 718 QDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCT 776 (782)
Q Consensus 718 ~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~ 776 (782)
.++|+++.+++|+|+||||++++++||+|++|++|+|+|.|+|+||++++|.|+++|+.
T Consensus 515 ~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 515 LELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred HHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHhh
Confidence 99999998999999999999999999999999999999999999999999999999863
No 15
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.8e-96 Score=863.74 Aligned_cols=568 Identities=32% Similarity=0.446 Sum_probs=501.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLW-KLLSKVGLLYALEPIFTVIFVMNMNT 240 (782)
Q Consensus 162 ~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
.++.++++++++++.++..+++.++..++..+.|++++.++|.+.++...... .....+++++++..++.++..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 91 (582)
T PRK11176 12 TFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISW 91 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888777777788888999999999987754332222 22222233445556666677777788
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 003981 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (782)
Q Consensus 241 ~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lal 320 (782)
+..++...+|..+|+|++++|.++|+++++|++++|+++|++.+++.+...+. ..+..++.++++++++++++|++++
T Consensus 92 ~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~l 169 (582)
T PRK11176 92 VSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALI--TVVREGASIIGLFIMMFYYSWQLSL 169 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999998877664 3567777888888899999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (782)
Q Consensus 321 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (782)
++++++++..++..++.++.++..++..+..++..+.+.|.++|+++||+++.|+.+.++|++..+++.+...+..+...
T Consensus 170 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T PRK11176 170 ILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776666666777777778888888888999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Q 003981 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (782)
Q Consensus 401 ~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~ 480 (782)
....+..++..+..++++++|++.+.+|.+|+|+++++.++...+..|+..+...+..++++..+.+|+.++++.+++++
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 329 (582)
T PRK11176 250 ISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999987643211
Q ss_pred hhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeee
Q 003981 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLN 560 (782)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Is 560 (782)
. .. ....+..+.|+|+||+|+|+++ ++++|+|+|
T Consensus 330 ~----------~~-----------------------------------~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~ 363 (582)
T PRK11176 330 E----------GK-----------------------------------RVIERAKGDIEFRNVTFTYPGK-EVPALRNIN 363 (582)
T ss_pred C----------CC-----------------------------------cCCCCCCCeEEEEEEEEecCCC-CCccccCce
Confidence 0 00 0001123569999999999743 468999999
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCC
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~ 640 (782)
|+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||||||++|+|+
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 443 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE 443 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 003981 641 ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDA 720 (782)
Q Consensus 641 ~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~ 720 (782)
+++||++++||+.+++++||++||+||||.+||+|.+|||||||||+|||||+++|+||||||||||||++||+.|.++
T Consensus 444 -~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~ 522 (582)
T PRK11176 444 -QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 522 (582)
T ss_pred -CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhh
Q 003981 721 LNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQR 778 (782)
Q Consensus 721 L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 778 (782)
|.++.++||+|+||||+++++.||+|++|++|+|+|+|+|+||+++++.|+++++.|.
T Consensus 523 l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~~ 580 (582)
T PRK11176 523 LDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQF 580 (582)
T ss_pred HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHHh
Confidence 9998889999999999999999999999999999999999999999999999999775
No 16
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-98 Score=800.25 Aligned_cols=551 Identities=28% Similarity=0.394 Sum_probs=454.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 178 GLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALE------PIFTVIFVMNMNTVWEKVMSIVKA 251 (782)
Q Consensus 178 ~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~lr~ 251 (782)
+.++++..+.-++....|++.++++|.+.... ...+........+.+++ +++.-++.+++..+.+...+++-.
T Consensus 218 ~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~-~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~ 296 (790)
T KOG0056|consen 218 VFCLFLLIIGRLINVSLPILSKWIVDELTAPD-TFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIET 296 (790)
T ss_pred HHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcc-hhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHH
Confidence 44444555556778889999999999887322 22233333323333322 233334445555667777888999
Q ss_pred HHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003981 252 QIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSE-VIGTICILFNIAPQLAPILGVLVLTVS 330 (782)
Q Consensus 252 ~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~-~i~~li~l~~~~~~Lali~l~~~~~~~ 330 (782)
++|+|+..+++.|+-++++||++.-++...+.+. ++...+. .+...+.. .++.+.+.+.++|+.++++++++.+.+
T Consensus 297 ~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF--~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~ 373 (790)
T KOG0056|consen 297 ELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVF--QIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYC 373 (790)
T ss_pred HHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHh--hcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998888776665 4433221 12222333 333334445589999998877766655
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 331 VLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAI 410 (782)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (782)
...........+..++++....+-.+...+++-+.+|||-|++|+.+.++|.+...++.+...+....-.+++...+.+.
T Consensus 374 ~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii 453 (790)
T KOG0056|consen 374 YVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGII 453 (790)
T ss_pred heeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44322222223344444544555556678999999999999999999999999999999999887776677777777777
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhccccccc
Q 003981 411 YISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDI 490 (782)
Q Consensus 411 ~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~ 490 (782)
.+++++--.+.+|+|..+.+|+|+++.|.+|+.++..|++.++-..-.+|...+.+|+++|+++++++-.+
T Consensus 454 ~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd--------- 524 (790)
T KOG0056|consen 454 GLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD--------- 524 (790)
T ss_pred hhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc---------
Confidence 77777766777899999999999999999999999999999999999999999999999999986542110
Q ss_pred ccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEE
Q 003981 491 QQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTA 570 (782)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~va 570 (782)
.| ...+-...+|.|+|+||+|+|+ +++|+|+||||+++||+++|
T Consensus 525 -~P---------------------------------~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvA 568 (790)
T KOG0056|consen 525 -LP---------------------------------GAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVA 568 (790)
T ss_pred -CC---------------------------------CCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEE
Confidence 00 0001112468999999999997 57899999999999999999
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHH
Q 003981 571 LVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIK 650 (782)
Q Consensus 571 IVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~ 650 (782)
+|||||+||||++++|.||||.++|.|+|||+||+++..+++|++||+||||..|||+||.+||.||+| .+++||+.+
T Consensus 569 lVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~--~Asneevya 646 (790)
T KOG0056|consen 569 LVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP--SASNEEVYA 646 (790)
T ss_pred EECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCC--CCChHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 599999999
Q ss_pred HHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEE
Q 003981 651 AAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTT 730 (782)
Q Consensus 651 A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTv 730 (782)
|+|.|++||-|.++|+||+|.|||||-+||||||||+||||+++|+|.|++|||||||||..||+.||.+|.++.++||.
T Consensus 647 AAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTt 726 (790)
T KOG0056|consen 647 AAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTT 726 (790)
T ss_pred HHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc-cCchHHHHHHhhh
Q 003981 731 LVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR-KGQYASLVCTQRL 779 (782)
Q Consensus 731 IvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~-~g~Y~~L~~~q~~ 779 (782)
|+|||||||+-+||.|+|+++|+|+|+|+||||+++ +|.|++||+.|+.
T Consensus 727 IVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 727 IVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQA 776 (790)
T ss_pred EEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence 999999999999999999999999999999999998 8999999988764
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.7e-94 Score=849.76 Aligned_cols=562 Identities=26% Similarity=0.358 Sum_probs=478.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-hHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 164 GLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPE-PLW--KLLSKVGLLYALEPIFTVIFVMNMNT 240 (782)
Q Consensus 164 ~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~-~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
+.+..+++++++.+++.+++.++..++.++.|++++.++|.+...... ... .+.+.+++++++..++.++..+....
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (592)
T PRK10790 12 KRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNR 91 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677788888888888888999999999999999987643221 111 11122233334455566777778888
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 003981 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (782)
Q Consensus 241 ~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lal 320 (782)
...++..++|.++|+|+++.|.++|+++++|++++|+++|++.+++++...+. .++..+..++++++++++++|++++
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l 169 (592)
T PRK10790 92 AAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVA--TVLRSAALIGAMLVAMFSLDWRMAL 169 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999887765 2566677778888889999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (782)
Q Consensus 321 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (782)
+++++++++++...++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+...
T Consensus 170 i~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (592)
T PRK10790 170 VAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDG 249 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766666655556666666677777777788888999999999999999999999999999988888888777666554
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 003981 401 LN-ESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEID 479 (782)
Q Consensus 401 ~~-~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~ 479 (782)
.. ..+..++..+..+++++++++ +..|.+++|.+++++.|...+..|+..++..+..++++..+.+|+.++++.++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 328 (592)
T PRK10790 250 FLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ 328 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 43 333444444443334444444 6789999999999999999999999999999999999999999999998754321
Q ss_pred hhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeee
Q 003981 480 DALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGL 559 (782)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~I 559 (782)
.. . ... ....++|+|+||+|+|++ ++++|+|+
T Consensus 329 ~~-----------~---------------------------------~~~--~~~~~~i~~~~v~f~y~~--~~~il~~i 360 (592)
T PRK10790 329 YG-----------N---------------------------------DDR--PLQSGRIDIDNVSFAYRD--DNLVLQNI 360 (592)
T ss_pred CC-----------C---------------------------------Ccc--CCCCCeEEEEEEEEEeCC--CCceeece
Confidence 00 0 000 012357999999999973 35799999
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCC
Q 003981 560 NLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639 (782)
Q Consensus 560 sl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p 639 (782)
||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||||||++|+
T Consensus 361 ~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~- 439 (592)
T PRK10790 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR- 439 (592)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 003981 640 DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQD 719 (782)
Q Consensus 640 ~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~ 719 (782)
+++|+++++||+.++++++|.+||+||||.+||+|.+|||||||||+|||||++||||||||||||+||++||+.|.+
T Consensus 440 --~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~ 517 (592)
T PRK10790 440 --DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQ 517 (592)
T ss_pred --CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhhh
Q 003981 720 ALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQRL 779 (782)
Q Consensus 720 ~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 779 (782)
.|+++.++||+|+||||+++++.||+|++|++|+|+|.|+|+||+++++.|+++++.|..
T Consensus 518 ~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~~ 577 (592)
T PRK10790 518 ALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLA 577 (592)
T ss_pred HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHhh
Confidence 999998899999999999999999999999999999999999999999999999998764
No 18
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.8e-93 Score=836.76 Aligned_cols=566 Identities=36% Similarity=0.502 Sum_probs=508.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 164 GLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPE-PLWKLLSKVGLLYALEPIFTVIFVMNMNTVW 242 (782)
Q Consensus 164 ~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (782)
+.++.+++++++.+++++++.++..++.+..|++++.++|........ .++.....+++++++..++.++..+...+.+
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 3 RRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999999999999999999977643322 2333333344555666777788888888999
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003981 243 EKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIL 322 (782)
Q Consensus 243 ~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~ 322 (782)
.++...+|..+|+|+++.|.++|++.++|++++|+++|++.+++++...+. ..+..++.++++++++++++|++++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~~l~~i~ 160 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFI--VLVRETLTVIGLFIVLLYYSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999987665 356778888899999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 323 GVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLN 402 (782)
Q Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (782)
++++++..++..++.++.++..++..+..++..+.+.|.++|+++||+++.|+.+.++|++..++..+...+..+.....
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777888888888888889999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Q 003981 403 ESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDAL 482 (782)
Q Consensus 403 ~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~ 482 (782)
..+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+.+.+..++++.++.+|+.++++.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~- 319 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT- 319 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-
Confidence 8888888888888899999999999999999999999999999999999999999999999999999999976432110
Q ss_pred hcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEE
Q 003981 483 ANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLT 562 (782)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~ 562 (782)
. ........++|+|+||+|+|+++ +.++|+|+||+
T Consensus 320 ----------~----------------------------------~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~ 354 (571)
T TIGR02203 320 ----------G----------------------------------TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLV 354 (571)
T ss_pred ----------C----------------------------------CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEE
Confidence 0 00000123579999999999853 46799999999
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN 642 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~ 642 (782)
|++||+++|||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|+||+|||||||++++| ++
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~ 433 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT-EQ 433 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999964 25
Q ss_pred CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 003981 643 VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALN 722 (782)
Q Consensus 643 ~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~ 722 (782)
++++++++||+.+++++++.+||+|+||+|||+|.+|||||||||+||||++++|||||||||||+||++||+.|.+.|+
T Consensus 434 ~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~ 513 (571)
T TIGR02203 434 ADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALE 513 (571)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhh
Q 003981 723 HLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQR 778 (782)
Q Consensus 723 ~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 778 (782)
+..++||+|+||||++.++.||+|++|++|++++.|+|+||+++++.|++++..|.
T Consensus 514 ~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~ 569 (571)
T TIGR02203 514 RLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQF 569 (571)
T ss_pred HHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHhh
Confidence 99899999999999999999999999999999999999999999999999988763
No 19
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-93 Score=786.96 Aligned_cols=552 Identities=26% Similarity=0.371 Sum_probs=494.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 179 LSVLTLIGCTTCTLSMPIFSGRFFEVLIGAR-PEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRV 257 (782)
Q Consensus 179 l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kl 257 (782)
...++.++..++.+.+.+++...++.++.+. ...++.++..+++++++++++.+.......+.+.++...+|..+++|+
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666677777778888888777544 445566666777788889999999999999999999999999999999
Q ss_pred HcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003981 258 LIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYK 337 (782)
Q Consensus 258 l~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~~~~~~~~~~~~~ 337 (782)
.+++..+-++.++|++++.++..++.++.+++..++. .+...+..++.++.+++++|.-++++++++|++++.+..+.
T Consensus 84 ~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq--~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg 161 (559)
T COG4988 84 AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ--MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVG 161 (559)
T ss_pred HhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999874 56666667777888899999999999999999999888889
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 338 RSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLAL 417 (782)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i 417 (782)
.+.++..+++.....++++++.|.++|+.|+|.|+..+...+++.+..+++++..++.-+..-....+..++.+++.+++
T Consensus 162 ~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlv 241 (559)
T COG4988 162 LAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALV 241 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887777788888888888887
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccccccccch
Q 003981 418 YCLGGSKVKA-GELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVE 496 (782)
Q Consensus 418 l~~G~~lv~~-g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~ 496 (782)
.++.+..... |++|+...+.++.+.--++.|+..++..+..-+++.++.+.+..+++.+...... ..
T Consensus 242 Av~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~----------~~-- 309 (559)
T COG4988 242 AVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGS----------GE-- 309 (559)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCC----------cc--
Confidence 7776666666 8999999999999999999999999999999999999999999999876432110 00
Q ss_pred hhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCC
Q 003981 497 DENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSG 576 (782)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SG 576 (782)
. .........+|+++|++|.||++ +++++|+||+++||+++||||+||
T Consensus 310 ~------------------------------~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SG 357 (559)
T COG4988 310 K------------------------------AEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASG 357 (559)
T ss_pred c------------------------------cccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCC
Confidence 0 00000112346677999999853 489999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhc
Q 003981 577 AGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAAN 656 (782)
Q Consensus 577 SGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~ 656 (782)
||||||+++|+||++|++|+|.+||+|+++++.+.||++++||+|+|+||+|||||||++++| +++||++++|++.++
T Consensus 358 aGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~--~~s~e~i~~al~~a~ 435 (559)
T COG4988 358 AGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP--DASDEEIIAALDQAG 435 (559)
T ss_pred CCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCC--cCCHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999976 589999999999999
Q ss_pred chhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecC
Q 003981 657 AHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHR 736 (782)
Q Consensus 657 l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHR 736 (782)
+.||+.. |+|+||+|||+|.+|||||+||+++||||+++++++|||||||+||.+||+.|+++|.++.++||+|+||||
T Consensus 436 l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHr 514 (559)
T COG4988 436 LLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR 514 (559)
T ss_pred HHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhhh
Q 003981 737 LSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQRL 779 (782)
Q Consensus 737 Lsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 779 (782)
+..+++||+|+|||+|+++|+|+|+||.+++|.|++|++.|..
T Consensus 515 l~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 515 LEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred hHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998863
No 20
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.8e-92 Score=828.85 Aligned_cols=565 Identities=30% Similarity=0.424 Sum_probs=487.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 164 GLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWE 243 (782)
Q Consensus 164 ~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (782)
+.+++++++++..+++.+++.++..++.++.|++++.++|.+..+. ..+..+..+++++++..+..++...+..++..
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (588)
T PRK13657 8 ARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG--DIFPLLAAWAGFGLFNIIAGVLVARHADRLAH 85 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888888889999999999999999999876532 22222222222333333334444445555666
Q ss_pred HHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003981 244 KVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILG 323 (782)
Q Consensus 244 ~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l 323 (782)
++...++.++|+|++++|..+|++.++|++++|+++|++.+...+...+. ..+..++.+++.++++++++|+++++++
T Consensus 86 ~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~~l 163 (588)
T PRK13657 86 RRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMR--EHLATLVALVVLLPLALFMNWRLSLVLV 163 (588)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888999999999999999999999999999999999887765554 2445556667777888899999998877
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 324 VLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNE 403 (782)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (782)
+++++..++..++.++.++..++..+..+++.+.+.|.++|+++||.|+.|+.+.++|.+..++..+...+..+......
T Consensus 164 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (588)
T PRK13657 164 VLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALAS 243 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666777777777778888889999999999999999999999999999999999999999888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Q 003981 404 SLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALA 483 (782)
Q Consensus 404 ~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~ 483 (782)
.+..++..+..++++++|++++.+|.+|+|+++++..++..+..|+..+...+..++++..+++|+.++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-- 321 (588)
T PRK13657 244 VLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRD-- 321 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--
Confidence 777788888888899999999999999999999999999999999999999999999999999999999876432110
Q ss_pred cccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEE
Q 003981 484 NGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTL 563 (782)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I 563 (782)
.+ . ........+.|+|+||+|+|++ ++++|+|+||++
T Consensus 322 --------~~---~------------------------------~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i 358 (588)
T PRK13657 322 --------PP---G------------------------------AIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEA 358 (588)
T ss_pred --------CC---C------------------------------CCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEE
Confidence 00 0 0000012357999999999973 356999999999
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV 643 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~ 643 (782)
+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||||||++++| ++
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~--~~ 436 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP--DA 436 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999965 58
Q ss_pred CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003981 644 SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNH 723 (782)
Q Consensus 644 s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~ 723 (782)
+|+++++||+.++++++|.++|+|+||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++|+.|.+.|++
T Consensus 437 ~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~ 516 (588)
T PRK13657 437 TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE 516 (588)
T ss_pred CHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhhh
Q 003981 724 LMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQRL 779 (782)
Q Consensus 724 l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 779 (782)
+.++||+|+||||+++++.||+|++|++|+++|.|+|+||+++++.|+++++.|..
T Consensus 517 ~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~ 572 (588)
T PRK13657 517 LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQGM 572 (588)
T ss_pred HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHhhc
Confidence 88899999999999999999999999999999999999999999999999987653
No 21
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.1e-91 Score=822.44 Aligned_cols=566 Identities=29% Similarity=0.389 Sum_probs=490.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 163 WGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVW 242 (782)
Q Consensus 163 ~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (782)
++.++++++++++.+++.+++.++..++.++.|++++.++|.+...... .. .+..+++++++..+..++..+...++.
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV-LP-TLALWAGFGVFNTIAYVLVAREADRLA 84 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999999999999999999987653321 11 111112223333344444555555666
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003981 243 EKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIL 322 (782)
Q Consensus 243 ~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~ 322 (782)
.++..++|.++|+|++++|++||+++++|++++|+++|++.+++++...+. ..+..++.+++++++++.++|++++++
T Consensus 85 ~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~li~ 162 (585)
T TIGR01192 85 HGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMR--QHLATFVALFLLIPTAFAMDWRLSIVL 162 (585)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888999999999999999999999999999999999988876654 245556667777788899999999988
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 323 GVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLN 402 (782)
Q Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (782)
++++++..++..++.++.++..++..+..+++.+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+..+..
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (585)
T TIGR01192 163 MVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALA 242 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777777777777888888899999999999999999999999999999999999988888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Q 003981 403 ESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDAL 482 (782)
Q Consensus 403 ~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~ 482 (782)
..+..++..+..++++++|++++.+|.+|+|++++++.++..+..|+..+.+.+..++.+..+++|+.++++.+++.+.
T Consensus 243 ~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~- 321 (585)
T TIGR01192 243 SGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE- 321 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC-
Confidence 7777777778888889999999999999999999999999999999999999999999999999999999876432110
Q ss_pred hcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEE
Q 003981 483 ANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLT 562 (782)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~ 562 (782)
. . .........+.|+|+||+|+|++ +.++|+|+||+
T Consensus 322 ----------~---~-----------------------------~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~ 357 (585)
T TIGR01192 322 ----------P---A-----------------------------DAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFE 357 (585)
T ss_pred ----------C---c-----------------------------cCCCCCCCCCeEEEEEEEEECCC--CCccccceeEE
Confidence 0 0 00000112357999999999973 34689999999
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN 642 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~ 642 (782)
|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++++||+|||++|++||+|||+++.| +
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~ 435 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE--G 435 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999965 4
Q ss_pred CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 003981 643 VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALN 722 (782)
Q Consensus 643 ~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~ 722 (782)
++++++++||+.+++++++.++|+|+||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++|+.+.++|+
T Consensus 436 ~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~ 515 (585)
T TIGR01192 436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAID 515 (585)
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhhh
Q 003981 723 HLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQRL 779 (782)
Q Consensus 723 ~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 779 (782)
++.+++|+|+||||+++++.||+|++|++|+|+|.|+|+||++++|.|+++++.|..
T Consensus 516 ~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~ 572 (585)
T TIGR01192 516 ALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRSGL 572 (585)
T ss_pred HHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhCcc
Confidence 988899999999999999999999999999999999999999999999999998764
No 22
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.6e-92 Score=822.55 Aligned_cols=524 Identities=23% Similarity=0.316 Sum_probs=451.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 165 LLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKL--LSKVGLLYALEPIFTVIFVMNMNTVW 242 (782)
Q Consensus 165 ~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (782)
.++++++++++.+++.+++.++..++.++.|++++.++|.+..... ..... ...+++++++..++.++..++..+..
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (529)
T TIGR02868 3 RILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAA 81 (529)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888889999999999999999999998764322 11111 11122233445566677777778888
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003981 243 EKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIL 322 (782)
Q Consensus 243 ~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~ 322 (782)
.++..++|.++|+|++++|.++|+++++|++++|+++|++.+++.+...+. .++..++.++++++++++++|.+++++
T Consensus 82 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~l~~ 159 (529)
T TIGR02868 82 LRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIV--PLVVALVVGSAAVAAIALLSVPAALVL 159 (529)
T ss_pred HHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999887664 256667778888889999999999887
Q ss_pred HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 323 GVLVLTVSVLVAV-YKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSL 401 (782)
Q Consensus 323 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (782)
++.++++.++..+ ..+..+...++.++..+++.+.+.|.++|+++||+|++|+.+.++|++..+++.+...+..+..+.
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02868 160 AAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGL 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665555544433 444445556666777889999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Q 003981 402 NESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDA 481 (782)
Q Consensus 402 ~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~ 481 (782)
...+..++..+..++++++|++++.+|.+|+|.+++++.+...+..|+..+.+.+..++++.++.+|+.++++.+++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (529)
T TIGR02868 240 GAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPE 319 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999976532111
Q ss_pred hhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeE
Q 003981 482 LANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNL 561 (782)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl 561 (782)
. ..+ .+....+..++|+|+||+|+|++ ++++|+|+||
T Consensus 320 ~--------~~~---------------------------------~~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl 356 (529)
T TIGR02868 320 G--------VVP---------------------------------AAGALGLGKPTLELRDLSFGYPG--SPPVLDGVSL 356 (529)
T ss_pred C--------CCC---------------------------------CCcccCCCCceEEEEEEEEecCC--CCceeecceE
Confidence 0 000 00000112357999999999974 3469999999
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE 641 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~ 641 (782)
+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|++++ .+++|++|+||||||+||+|||||||+||+|
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~-- 433 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP-- 433 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCC--
Confidence 9999999999999999999999999999999999999999999999 9999999999999999999999999999965
Q ss_pred CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 003981 642 NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDAL 721 (782)
Q Consensus 642 ~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L 721 (782)
++++|++++||+.|+++|||.+||+||||+|||+|.+||||||||||||||+++|||||||||||||||++||+.|+++|
T Consensus 434 ~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l 513 (529)
T TIGR02868 434 DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL 513 (529)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEecCh
Q 003981 722 NHLMKGRTTLVIAHRL 737 (782)
Q Consensus 722 ~~l~~~kTvIvIaHRL 737 (782)
++..+++|+|+||||+
T Consensus 514 ~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 514 LAALSGKTVVVITHHL 529 (529)
T ss_pred HHhcCCCEEEEEecCC
Confidence 9998999999999996
No 23
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-93 Score=774.18 Aligned_cols=553 Identities=29% Similarity=0.448 Sum_probs=463.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 178 GLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-EPLW----KLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQ 252 (782)
Q Consensus 178 ~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~-~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 252 (782)
+.++++++.+-.+....|.+++..+|.+...+. ...+ ..+..++++-++..++..+....+..+.+++.++...+
T Consensus 33 ~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~ 112 (591)
T KOG0057|consen 33 FPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSD 112 (591)
T ss_pred HHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444457888999999999998742111 1122 22233334445556667777888899999999999999
Q ss_pred HHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHH
Q 003981 253 IFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTI-CILFNIAPQLAPILGVLVLTVSV 331 (782)
Q Consensus 253 lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~l-i~l~~~~~~Lali~l~~~~~~~~ 331 (782)
+|+|++.++.++|.+..+|++.+.+......+..++...+.. ++..++.+.... .+..-.++..+++.+..+.....
T Consensus 113 vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~--i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a 190 (591)
T KOG0057|consen 113 VFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN--IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAA 190 (591)
T ss_pred HHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhe
Confidence 999999999999999999999999999998998888765542 333333332222 33333556666555544444443
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 332 LVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIY 411 (782)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (782)
..+...+...+..++++.+.++....+.|++.|.++||+||.|+++.++|.+...++.+...+....-++.+.....+..
T Consensus 191 ~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs 270 (591)
T KOG0057|consen 191 FTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS 270 (591)
T ss_pred eEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH
Confidence 33334444445667788888888999999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccccc
Q 003981 412 ISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQ 491 (782)
Q Consensus 412 l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~ 491 (782)
+....+.+.|..-+.+|.+|+|+++...++.+++..|+..++..+.++.++...++-+....+... +..
T Consensus 271 v~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~-~i~---------- 339 (591)
T KOG0057|consen 271 VALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDE-DIQ---------- 339 (591)
T ss_pred HHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh-hhh----------
Confidence 888888888888889999999999999999999999999999999999999988877665543211 000
Q ss_pred cccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEE
Q 003981 492 QKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTAL 571 (782)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaI 571 (782)
.. ..+....++.|+|+||+|+|+ +++++|+++||+|++||+|||
T Consensus 340 ~~----------------------------------~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaI 383 (591)
T KOG0057|consen 340 EA----------------------------------ALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAI 383 (591)
T ss_pred hc----------------------------------cCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEE
Confidence 00 000112356799999999997 466799999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHH
Q 003981 572 VGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKA 651 (782)
Q Consensus 572 VG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A 651 (782)
||+|||||||++++|+||++ ++|+|+|||+||++++++++|+.|||||||..|||+||-+||.||+| .+++||+.++
T Consensus 384 vG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~--sas~eeV~e~ 460 (591)
T KOG0057|consen 384 VGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP--SASDEEVVEA 460 (591)
T ss_pred ECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC--CcCHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999976 6999999999
Q ss_pred HHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 003981 652 AKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTL 731 (782)
Q Consensus 652 ~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvI 731 (782)
||.+++||.|.+||+||+|.|||||..|||||||||+||||++|||||++||||||+||++||+.+.++|.+...+||+|
T Consensus 461 ~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI 540 (591)
T KOG0057|consen 461 CKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVI 540 (591)
T ss_pred HHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhhhhcC
Q 003981 732 VIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQRLAFE 782 (782)
Q Consensus 732 vIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~~~~ 782 (782)
+|+||++++++||+|+|||+|+|+|.|+|+||+++++.|+++|..|....|
T Consensus 541 ~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~~~~~ 591 (591)
T KOG0057|consen 541 MIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQTSSRE 591 (591)
T ss_pred EEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhccccccCC
Confidence 999999999999999999999999999999999999999999999887654
No 24
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.7e-91 Score=822.40 Aligned_cols=571 Identities=36% Similarity=0.550 Sum_probs=498.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMNT 240 (782)
Q Consensus 162 ~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
.++.++++++++++.+.+.+++.++..++.++.|++++.++|.+..... ..+..+..++++++++..++.++..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 5 PLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888889999999999999999999998653322 223333333334444455566677778888
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 003981 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (782)
Q Consensus 241 ~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lal 320 (782)
++.++...+|..+|+|++++|.++|++.++|++++|+++|++.+++++...+. .++..++.+++.++++++++|++++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLS--MALRNALMCIGGLIMMFITSPKLTS 162 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 89999999999999999999999999999999999999999999999877654 2466677788888889999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (782)
Q Consensus 321 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (782)
++++.+++.++...++.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.++|++..++..+...+..+...
T Consensus 163 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (576)
T TIGR02204 163 LVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRA 242 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777666666666778888888888888888999999999999999999999999999999999988888887777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Q 003981 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (782)
Q Consensus 401 ~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~ 480 (782)
....+..++..+..++++++|++++.+|.+|+|+++++..++..+..|+..++..+..++++.++++|+.++++.+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 322 (576)
T TIGR02204 243 LLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIK 322 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 66666666666777788889999999999999999999999999999999999999999999999999999997643211
Q ss_pred hhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeee
Q 003981 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLN 560 (782)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Is 560 (782)
.. ... .....+..+.|+|+||+|+|+++.++++|+|+|
T Consensus 323 ~~--------~~~----------------------------------~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~in 360 (576)
T TIGR02204 323 AP--------AHP----------------------------------KTLPVPLRGEIEFEQVNFAYPARPDQPALDGLN 360 (576)
T ss_pred CC--------CCC----------------------------------ccCCcCCCceEEEEEEEEECCCCCCCcccccee
Confidence 00 000 000001235699999999998543367999999
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCC
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~ 640 (782)
|+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||||||++|+|
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~- 439 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP- 439 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 003981 641 ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDA 720 (782)
Q Consensus 641 ~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~ 720 (782)
++++++++++++.+++++++.++|+|+||.+||+|.+|||||||||+||||++++|+|||||||||+||.++|+.|.+.
T Consensus 440 -~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~ 518 (576)
T TIGR02204 440 -DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQA 518 (576)
T ss_pred -CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhh
Q 003981 721 LNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQR 778 (782)
Q Consensus 721 L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 778 (782)
|+++.+++|+|+||||++.++.||+|++|++|+++|.|+|+||+++++.|++|++.|.
T Consensus 519 l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~~ 576 (576)
T TIGR02204 519 LETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQF 576 (576)
T ss_pred HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhhcC
Confidence 9999889999999999999999999999999999999999999999999999998773
No 25
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.2e-91 Score=820.55 Aligned_cols=547 Identities=28% Similarity=0.412 Sum_probs=474.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 003981 184 LIGCTTCTLSMPIFSGRFFEVLIGARP--EPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQK 261 (782)
Q Consensus 184 ~l~~~~~~l~~P~~~~~~id~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp 261 (782)
.++..++.++.|++++.++|.+..... ..++.+...+++++++..++.++..+.....+.++..++|.++|+|++++|
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455567788899999999998764321 122222333333444555666666777778889999999999999999999
Q ss_pred hhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 003981 262 AEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICIL-FNIAPQLAPILGVLVLTVSVLVAVYKRST 340 (782)
Q Consensus 262 ~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l-~~~~~~Lali~l~~~~~~~~~~~~~~~~~ 340 (782)
.++|+++++|++++|+++|++.++..+...+. ..+..++.++++++++ ++++|++++++++++++..++...+.++.
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 161 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVL--TLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQL 161 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877665543 2334444444444444 57999999888777777777777777787
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 341 VPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCL 420 (782)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~il~~ 420 (782)
++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..+....+...+..+..++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (569)
T PRK10789 162 HERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888999999999999999999999999999999999999999998888888777777777777778888899
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccccccccchhhhh
Q 003981 421 GGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENI 500 (782)
Q Consensus 421 G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (782)
|++++.+|.+|+|.+++++.|...+..|+..+++.+..++++.++.+|+.++++.+++.+. ..
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~----------~~------- 304 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD----------GS------- 304 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC----------CC-------
Confidence 9999999999999999999999999999999999999999999999999999976432110 00
Q ss_pred hhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHH
Q 003981 501 KLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKS 580 (782)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKS 580 (782)
.......+.|+|+||+|+|+.+ +.++|+|+||+|+|||++|||||||||||
T Consensus 305 ----------------------------~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKS 355 (569)
T PRK10789 305 ----------------------------EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKS 355 (569)
T ss_pred ----------------------------CCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHH
Confidence 0000123579999999999843 45799999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhH
Q 003981 581 TIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDF 660 (782)
Q Consensus 581 TLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~df 660 (782)
||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+|+||++||||||++|.| +++++++++|++.++++++
T Consensus 356 TLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~l~~~ 433 (569)
T PRK10789 356 TLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP--DATQQEIEHVARLASVHDD 433 (569)
T ss_pred HHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCC--CCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999965 5899999999999999999
Q ss_pred HHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHH
Q 003981 661 IISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTV 740 (782)
Q Consensus 661 I~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti 740 (782)
+.+||+||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.|.+.|+++.+++|+|+||||++++
T Consensus 434 i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~ 513 (569)
T PRK10789 434 ILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSAL 513 (569)
T ss_pred HHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhhhh
Q 003981 741 QNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQRLA 780 (782)
Q Consensus 741 ~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~~ 780 (782)
+.||+|++|++|+|+|+|+|+||++++|.|+++++.|...
T Consensus 514 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~~ 553 (569)
T PRK10789 514 TEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQLE 553 (569)
T ss_pred HcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhhhc
Confidence 9999999999999999999999999999999999987643
No 26
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6.4e-91 Score=885.03 Aligned_cols=567 Identities=22% Similarity=0.308 Sum_probs=460.0
Q ss_pred hHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 162 TWGLLWSLFLKHKLRLG-LSVLTLIGCTTCTLSMPIFSGRFFEVLIG-ARPEPLWKLLSKVGLLYALEPIFTVIFVMNMN 239 (782)
Q Consensus 162 ~~~~l~~~l~~~~~~~~-l~~l~~l~~~~~~l~~P~~~~~~id~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (782)
.|..++.|++...+... +.+++.++..++.+..++.++...|.... .........+..++++.++..++.++..++..
T Consensus 951 ~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~ 1030 (1522)
T TIGR00957 951 ELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVS 1030 (1522)
T ss_pred cHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777776543332 33333344455667777777776664221 11111111122333444445555566666777
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Q 003981 240 TVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLA 319 (782)
Q Consensus 240 ~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~La 319 (782)
..+.+...++|.++|+++++.|++||+++++|+++||+++|++.+++.+...+. ..+..++.+++.++++++.+|+++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~--~~~~~~~~~i~~li~~~~~~~~~~ 1108 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIK--MFMGSLFNVIGALIVILLATPIAA 1108 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999987665 356667777788888888888776
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 320 PILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFK 399 (782)
Q Consensus 320 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (782)
+++++++++..++..++.+..+...+......+.+.+++.|+++|+++||+|++|+.+.+++.+..+...+.........
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1188 (1522)
T TIGR00957 1109 VIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1188 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555444444555566666776677777778899999999999999999999999999998888777776665544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 003981 400 SLNESLTRIAIYISLLALYCLGGSKVK-AGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEI 478 (782)
Q Consensus 400 ~~~~~~~~~~~~l~~~~il~~G~~lv~-~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~ 478 (782)
.+......++. .++++++|++.+. .|.+++|.+.+++.|+..+..|+..+...+.+++.+.+|++|+.++++.+++
T Consensus 1189 ~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e 1265 (1522)
T TIGR00957 1189 RWLAVRLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKE 1265 (1522)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44443333332 2234445555554 5889999999999999999999999999999999999999999999976543
Q ss_pred chhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceee
Q 003981 479 DDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNG 558 (782)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~ 558 (782)
++.. .. . ..+....+..|.|+|+||+|+|+.+ .+++|+|
T Consensus 1266 ~~~~---------~~---~----------------------------~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~ 1304 (1522)
T TIGR00957 1266 APWQ---------IQ---E----------------------------TAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRH 1304 (1522)
T ss_pred cccc---------cc---C----------------------------CCCCCCCCCCCcEEEEEEEEEeCCC-Ccccccc
Confidence 2100 00 0 0000011235789999999999743 3579999
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCC
Q 003981 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638 (782)
Q Consensus 559 Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~ 638 (782)
|||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+|||||||...
T Consensus 1305 is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~- 1383 (1522)
T TIGR00957 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF- 1383 (1522)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred CCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q 003981 639 PDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQ 718 (782)
Q Consensus 639 p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~ 718 (782)
++++|||+++|++.|+++|||.+||+||||+|||+|.+|||||||||||||||+|+|+||||||||||||++||+.|+
T Consensus 1384 --~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq 1461 (1522)
T TIGR00957 1384 --SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQ 1461 (1522)
T ss_pred --cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 258999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHh
Q 003981 719 DALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQ 777 (782)
Q Consensus 719 ~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q 777 (782)
++|++..++||+|+||||++|+++||+|+|||+|+|+|.|+|+||++++|.|++|++..
T Consensus 1462 ~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1462 STIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKDA 1520 (1522)
T ss_pred HHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999863
No 27
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1e-89 Score=873.07 Aligned_cols=568 Identities=21% Similarity=0.271 Sum_probs=431.8
Q ss_pred hhHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 161 ITWGLLWSLFLKHKL--RLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNM 238 (782)
Q Consensus 161 ~~~~~l~~~l~~~~~--~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (782)
..|..++.|++...+ .+.+.+++.++..++.+..++.++...|......... ...+..++++.++..++.++..++.
T Consensus 899 v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~-~~~~~i~~~l~~~~~i~~~~~~~~~ 977 (1622)
T PLN03130 899 VSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGP-LFYNLIYALLSFGQVLVTLLNSYWL 977 (1622)
T ss_pred cCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCch-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777765332 2233344444455666667777776666432211111 1122234444555566667777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHH
Q 003981 239 NTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQL 318 (782)
Q Consensus 239 ~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~L 318 (782)
...+.+...++|.++|++++++|++||+++++|+++||+++|++.+++.+...+. ..+..++.+++.++++++++|..
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~--~~~~~~~~~i~~~i~i~~~~~~~ 1055 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVN--MFLGQIFQLLSTFVLIGIVSTIS 1055 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999998877664 35566667777777777777744
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 319 APILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTF 398 (782)
Q Consensus 319 ali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 398 (782)
.++++++++++.+...++.+..++..+......+.+.+++.|+++|+++||+|++|+++.+++.+..+...+........
T Consensus 1056 ~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~ 1135 (1622)
T PLN03130 1056 LWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSS 1135 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222222222334555555555556666788889999999999999999999876665554444433322221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 399 KSLNESLTRIAIYISLLALYCLGGSKVKAGE-LS-----VGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSI 472 (782)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~-lt-----~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~l 472 (782)
..+...... .+..+++++.|.+.+..+. .+ .+.+..+++|...+..++..+...+..++.+.++++|+.++
T Consensus 1136 ~~wl~~~l~---~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~ 1212 (1622)
T PLN03130 1136 NRWLAIRLE---TLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTY 1212 (1622)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1222223333444454432 11 23344445566677777777888888999999999999999
Q ss_pred hcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCC
Q 003981 473 LSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPD 552 (782)
Q Consensus 473 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~ 552 (782)
++.+++.+... . + ..+....+..|.|+|+||+|+|+.+ .
T Consensus 1213 ~~~~~E~~~~~--------~----~----------------------------~~~~~~wp~~g~I~f~nVsf~Y~~~-~ 1251 (1622)
T PLN03130 1213 IDLPSEAPLVI--------E----N----------------------------NRPPPGWPSSGSIKFEDVVLRYRPE-L 1251 (1622)
T ss_pred hCCCCcccccc--------c----C----------------------------CCCCCCCCCCCcEEEEEEEEEeCCC-C
Confidence 98754321100 0 0 0000011235789999999999632 3
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIre 632 (782)
++||+||||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||+||+|||||
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIre 1331 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRF 1331 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 003981 633 NIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAV 712 (782)
Q Consensus 633 NI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~ 712 (782)
||.++. +++|||+++||+.|+++|||.+||+||||+|||+|.+|||||||||||||||+|+|+||||||||||||++
T Consensus 1332 NLd~~~---~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~ 1408 (1622)
T PLN03130 1332 NLDPFN---EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVR 1408 (1622)
T ss_pred HhCcCC---CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 999884 47999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc-cCchHHHHHHhh
Q 003981 713 SERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR-KGQYASLVCTQR 778 (782)
Q Consensus 713 tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~-~g~Y~~L~~~q~ 778 (782)
||+.|+++|++..++||+|+||||++|+++||+|+|||+|+|+|.|+|+||+++ +|.|++|++.+.
T Consensus 1409 Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1409 TDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999987 699999997654
No 28
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=4.1e-89 Score=793.99 Aligned_cols=526 Identities=26% Similarity=0.362 Sum_probs=459.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 174 KLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLI-GARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKA 251 (782)
Q Consensus 174 ~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~-~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 251 (782)
|+.+.+++++.++.+++.++.|+++++++|.+. .... ..+..+...+++++++..++.++..+...+++.++..++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888999999999999999874 3222 23333344444555666777788888888999999999999
Q ss_pred HHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003981 252 QIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSV 331 (782)
Q Consensus 252 ~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~~~~~~~ 331 (782)
++|+|++++|..+|+++++|++++|+++|++.+++++...+. ..+..++.++++++++++++|.+++++++.+++..+
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLP--QLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877654 245666677778888999999999887777666666
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 332 LVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIY 411 (782)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (782)
+..++.++.++..++.++..+++.+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+.......+..++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777778888888899999999999999999999999999999999999999888887777777777777777
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccccc
Q 003981 412 ISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQ 491 (782)
Q Consensus 412 l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~ 491 (782)
+..+++++++++.+.+|.+|+|.+++++.+...+..|+..+...+..++++.++++|+.++++.++++..
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---------- 309 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---------- 309 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----------
Confidence 7766666677788889999999999999999999999999999999999999999999999974321100
Q ss_pred cccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEE
Q 003981 492 QKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTAL 571 (782)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaI 571 (782)
. .+.. ....+.|+|+||+|+|+++ ++++|+|+||+|+|||++||
T Consensus 310 -~---------------------------------~~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~i 353 (529)
T TIGR02857 310 -K---------------------------------APVT-AAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVAL 353 (529)
T ss_pred -C---------------------------------cCCC-CCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEE
Confidence 0 0000 0112479999999999843 35799999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHH
Q 003981 572 VGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKA 651 (782)
Q Consensus 572 VG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A 651 (782)
||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|||++|+|||||||++|.| +++++++++|
T Consensus 354 vG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~--~~~~~~i~~a 431 (529)
T TIGR02857 354 VGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP--DASDAEIRRA 431 (529)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCC--CCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999965 5799999999
Q ss_pred HHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 003981 652 AKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTL 731 (782)
Q Consensus 652 ~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvI 731 (782)
|+.++++|||++||+||||++||+|.+|||||||||+||||+++||+|||||||||+||++||+.|.++|+++.+++|+|
T Consensus 432 ~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i 511 (529)
T TIGR02857 432 LERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVL 511 (529)
T ss_pred HHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred EEecChhHHHhcCeEEEE
Q 003981 732 VIAHRLSTVQNAHQIALC 749 (782)
Q Consensus 732 vIaHRLsti~~aD~IiVL 749 (782)
+||||+++++.||+|+||
T Consensus 512 ~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 512 LVTHRLALAERADRIVVL 529 (529)
T ss_pred EEecCHHHHHhCCEEEeC
Confidence 999999999999999986
No 29
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9e-89 Score=856.99 Aligned_cols=570 Identities=28% Similarity=0.396 Sum_probs=495.4
Q ss_pred hHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 162 TWGLLWSLF-LKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNT 240 (782)
Q Consensus 162 ~~~~l~~~l-~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
.+..++++. +.+++.++++++++++..++..+.|++++.++|.+.... ....+...++++.++..++.++..+++.+
T Consensus 46 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 123 (1466)
T PTZ00265 46 PFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE--NVNDIIFSLVLIGIFQFILSFISSFCMDV 123 (1466)
T ss_pred cHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455553 567788888999999999999999999999999764221 22223334445556667778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 003981 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (782)
Q Consensus 241 ~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lal 320 (782)
+++++..++|.++|+|++++|++||+++++|++++++++|++.++..+...+. .++..+++++++++++++++|+|++
T Consensus 124 ~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~--~~~~~~~~~i~~~i~~~~~sw~Lal 201 (1466)
T PTZ00265 124 VTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFI--TIFTYASAFLGLYIWSLFKNARLTL 201 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999887775 3677788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (782)
Q Consensus 321 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (782)
++++++|+++++..++.++.++..++.++..+++++.+.|+++|+++||+|+.|+.+.++|.+..+.+.+...+.....+
T Consensus 202 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~ 281 (1466)
T PTZ00265 202 CITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMES 281 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888877777888888777787888888999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 401 LNESLTRIAIYISLLALYCLGGSKVKAG--------ELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSI 472 (782)
Q Consensus 401 ~~~~~~~~~~~l~~~~il~~G~~lv~~g--------~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~l 472 (782)
+...+..++.++..++++|+|++++.+| .+++|.+++++.+.......+..+...+..++.+.+|++||.++
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~i 361 (1466)
T PTZ00265 282 LHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEI 361 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888999999999999986 58999998877666555555666777788999999999999999
Q ss_pred hcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCC
Q 003981 473 LSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPD 552 (782)
Q Consensus 473 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~ 552 (782)
++.+++.+. . + .... .+..+.|+|+||+|+|+++++
T Consensus 362 i~~~~~~~~-----------~---~-----------------------------~~~~-~~~~~~I~~~nVsf~Y~~~~~ 397 (1466)
T PTZ00265 362 INRKPLVEN-----------N---D-----------------------------DGKK-LKDIKKIQFKNVRFHYDTRKD 397 (1466)
T ss_pred HcCCCCCCC-----------C---C-----------------------------CCcc-CCCCCcEEEEEEEEEcCCCCC
Confidence 986532110 0 0 0000 001236999999999986545
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEE-CCeeCCCCChHhhhhceEEEcccCCCCcccHH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV-GGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~i-dG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIr 631 (782)
.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++ ||+|+++++..+||++|+||+|+|+||++||+
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~ 477 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIK 477 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHH
Confidence 67999999999999999999999999999999999999999999999 67999999999999999999999999999999
Q ss_pred HHHHcCCCC-------------------------------------------------------CCCCHHHHHHHHHHhc
Q 003981 632 ENIAYGLPD-------------------------------------------------------ENVSKDDIIKAAKAAN 656 (782)
Q Consensus 632 eNI~~G~p~-------------------------------------------------------~~~s~eei~~A~~~a~ 656 (782)
|||+||.+. ++++++++++||+.++
T Consensus 478 eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~ 557 (1466)
T PTZ00265 478 NNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVL 557 (1466)
T ss_pred HHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhC
Confidence 999998420 1367899999999999
Q ss_pred chhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEe
Q 003981 657 AHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIA 734 (782)
Q Consensus 657 l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIa 734 (782)
+++||.+||+||||.||++|.+|||||||||+|||||+++|+|||||||||+||+++|+.|+++|+++. +|+|+|+||
T Consensus 558 l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIs 637 (1466)
T PTZ00265 558 IHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIA 637 (1466)
T ss_pred cHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 489999999
Q ss_pred cChhHHHhcCeEEEEeCC-----------------------------------------------EEEEecCHHHHHh-c
Q 003981 735 HRLSTVQNAHQIALCSDG-----------------------------------------------RIAELGTHFELLA-R 766 (782)
Q Consensus 735 HRLsti~~aD~IiVLd~G-----------------------------------------------~Ive~Gth~eLl~-~ 766 (782)
||+++++.||+|+||++| +|+|+|||+||++ +
T Consensus 638 Hrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~ 717 (1466)
T PTZ00265 638 HRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNK 717 (1466)
T ss_pred CCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhcc
Confidence 999999999999999986 5999999999998 6
Q ss_pred cCchHHHHHHhhh
Q 003981 767 KGQYASLVCTQRL 779 (782)
Q Consensus 767 ~g~Y~~L~~~q~~ 779 (782)
+|.|+.|++.|..
T Consensus 718 ~g~y~~l~~~q~~ 730 (1466)
T PTZ00265 718 NGIYYTMINNQKV 730 (1466)
T ss_pred CCcHHHHHhhhcc
Confidence 9999999988753
No 30
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-92 Score=742.86 Aligned_cols=491 Identities=32% Similarity=0.468 Sum_probs=430.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHh
Q 003981 237 NMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEV-IGTICILFNIA 315 (782)
Q Consensus 237 ~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~-i~~li~l~~~~ 315 (782)
++..+++.....+--+.|.|+.++++.|.-++.+|.+..-+......++.++...+. .++..++.+ +.+.++...++
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~--~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILF--NILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHH--HhhHHHHHHHHHHHHHHhhcc
Confidence 445667777778889999999999999999999999988777777677666655443 233334433 34445555689
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 003981 316 PQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKL 395 (782)
Q Consensus 316 ~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~ 395 (782)
|+.+++.++++.+..++.....-......+..++++++.++...+++-+.+++|.|+.|+.+..+|.+.++.+.++..+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99998888777666555433333334455677788888999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003981 396 GTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILST 475 (782)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~ 475 (782)
.....+++.....+...+...+...++..+..|++|+|+++....++.++..|+..++....+++++...++++.++++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 88778888777788888888888889999999999999999999999999999999999999999999999999999976
Q ss_pred CccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccc
Q 003981 476 TEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVI 555 (782)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v 555 (782)
+.+... .+ + ..+.. +-..|.|.|+||+|.|. +..++
T Consensus 243 ~~~v~d----------~p---d----------------------------a~~L~-~~~~g~v~F~~V~F~y~--~~r~i 278 (497)
T COG5265 243 EAEVSD----------AP---D----------------------------APPLW-PVRLGAVAFINVSFAYD--PRRPI 278 (497)
T ss_pred chhhcc----------CC---C----------------------------Ccccc-ccccceEEEEEEEeecc--ccchh
Confidence 432110 00 0 00000 01357899999999997 56799
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHH
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~ 635 (782)
|+|+||++++|+++||||+||+||||+.+||.||||+++|.|.+||+|++++..+++|+.||+||||..||++||..||.
T Consensus 279 L~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ 358 (497)
T COG5265 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIK 358 (497)
T ss_pred hcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 003981 636 YGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSER 715 (782)
Q Consensus 636 ~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~ 715 (782)
||+| ++++||+++|++.|++||||++||+||||.|||+|-.||||||||+||||++||+|+||+|||||||||+.||+
T Consensus 359 ygr~--~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~ 436 (497)
T COG5265 359 YGRP--DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQ 436 (497)
T ss_pred ccCc--cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHH
Confidence 9976 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHH
Q 003981 716 LVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVC 775 (782)
Q Consensus 716 ~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~ 775 (782)
.||.+|++..+|+|+++||||||||.+||+|+||++|+|+|+|+|+||++++|.|++||.
T Consensus 437 ~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 437 AIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred HHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999996
No 31
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-89 Score=741.95 Aligned_cols=556 Identities=26% Similarity=0.385 Sum_probs=464.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 171 LKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLL---SKVGLLYALEPIFTVIFVMNMNTVWEKVMS 247 (782)
Q Consensus 171 ~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (782)
+++++.+.++++++++..+..+..-.+++++|..-.-........++ ..+=++.+++.+..|.-....+....++..
T Consensus 12 ~~~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~ 91 (573)
T COG4987 12 KRHKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLS 91 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33777888888888888888888778889988743211111111111 111123344555556555666777789999
Q ss_pred HHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003981 248 IVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVL 327 (782)
Q Consensus 248 ~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~~~ 327 (782)
++|.++|+|+..++..-..+.++||+++|+..|+|.+++++-..+.+ ++.+++.+++..+.+-+++|.+++.++..+.
T Consensus 92 ~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P--~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll 169 (573)
T COG4987 92 ALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAP--AVVALVLIAVVTIGLSFFSIPLALLLGLILL 169 (573)
T ss_pred HHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888763 5566666666666677889999887665544
Q ss_pred H-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 328 T-VSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLT 406 (782)
Q Consensus 328 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (782)
+ +.++.+++.+..++..+...+..+.+.+.+.|.+.|....+.||.++.+.+.+.+....+.+...+..++..+...+.
T Consensus 170 ~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~ 249 (573)
T COG4987 170 LLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL 249 (573)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 444556677778888888888889999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCccchhhhcc
Q 003981 407 RIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLV-NTFGDLRGTFAAVERINSILSTTEIDDALANG 485 (782)
Q Consensus 407 ~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~-~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~ 485 (782)
.++..+..+..+.+.+-.+..|..+.-...+++...+..+.++..+. ..+.++.+...|++|+.++++.+++...
T Consensus 250 ~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~---- 325 (573)
T COG4987 250 LLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTF---- 325 (573)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCC----
Confidence 87777776634444444566677775444444444466677777776 7889999999999999999876543211
Q ss_pred cccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeC
Q 003981 486 LERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKS 565 (782)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~ 565 (782)
+ + .... ...+ .++++||||+||+. +.++|+|+||++++
T Consensus 326 -------~---~-----------------------------~~~~-~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~ 363 (573)
T COG4987 326 -------P---D-----------------------------EQTA-TTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQ 363 (573)
T ss_pred -------C---c-----------------------------cccC-Cccc-eeeeccceeecCCC-ccchhhccceeecC
Confidence 0 0 0000 0111 69999999999964 66899999999999
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCH
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSK 645 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~ 645 (782)
||+|||+|+||||||||+++|+|.|+|++|+|+++|.++..++.+.+|+.|++++|.++||+||+||||++++| ++||
T Consensus 364 GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~--~AsD 441 (573)
T COG4987 364 GEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP--DASD 441 (573)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC--CCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999977 5999
Q ss_pred HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 003981 646 DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM 725 (782)
Q Consensus 646 eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~ 725 (782)
||+++|++++++++++++.|+||+|.+||+|.+||||||||+||||+|++|+||+||||||.+||++||++|.+.|.+..
T Consensus 442 Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~ 521 (573)
T COG4987 442 EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA 521 (573)
T ss_pred HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHH
Q 003981 726 KGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCT 776 (782)
Q Consensus 726 ~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~ 776 (782)
+|||+|+||||+.-++.||+|+|||+|+|+|+|+|+||++++|.|+++++.
T Consensus 522 ~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q~ 572 (573)
T COG4987 522 EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQL 572 (573)
T ss_pred cCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999863
No 32
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.9e-88 Score=787.59 Aligned_cols=540 Identities=24% Similarity=0.323 Sum_probs=465.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 171 LKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGAR-PEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIV 249 (782)
Q Consensus 171 ~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 249 (782)
+++++.+...+++.++..++.++.|++++.++|.+.... ...++.+...+++++++..++.++..+...+++.++..++
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888889999999999999999876432 2334434444445556667777888888888999999999
Q ss_pred HHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003981 250 KAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTV 329 (782)
Q Consensus 250 r~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~~~~~ 329 (782)
|.++|+|++++|+. ..++.++++++|++.+++++...... ..+..+. .++.++++++++|++++++++.++++
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~-~~~~~~~-~~~~~~~l~~~~~~l~li~l~~~~l~ 154 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLF-AFFDAPW-MPIYLLVCFLLHPWIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHH-HHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999984 33667889999999999988663221 1233333 33445678899999998877666665
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 330 SVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIA 409 (782)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (782)
+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+..+....+..++
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666777778888888999999999999999999999999999999999999998888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccc
Q 003981 410 IYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERD 489 (782)
Q Consensus 410 ~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~ 489 (782)
..+..++++++|++++.+|.+|+|.+++++.++..+..|+..+...+..++++.++.+|+.++++.+++.+.
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-------- 306 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP-------- 306 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC--------
Confidence 777788888999999999999999999999999999999999999999999999999999999976432110
Q ss_pred cccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEE
Q 003981 490 IQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVT 569 (782)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~v 569 (782)
.. . .....+.|+++||+|+|+++ ++++|+|+||+|+|||++
T Consensus 307 --~~-----------------------------------~-~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~ 347 (544)
T TIGR01842 307 --AM-----------------------------------P-LPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEAL 347 (544)
T ss_pred --CC-----------------------------------C-CCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEE
Confidence 00 0 00123569999999999743 457999999999999999
Q ss_pred EEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHH
Q 003981 570 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDII 649 (782)
Q Consensus 570 aIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~ 649 (782)
||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||+++.+ ++++++++
T Consensus 348 ~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~ 425 (544)
T TIGR01842 348 AIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE--NADPEKII 425 (544)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998854 58999999
Q ss_pred HHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCc
Q 003981 650 KAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGR 728 (782)
Q Consensus 650 ~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~k 728 (782)
+||+.+++++++++||+|+||.+||+|.+|||||||||+||||+++||+|||||||||+||+++|+.+.++|+++. +++
T Consensus 426 ~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~ 505 (544)
T TIGR01842 426 EAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGI 505 (544)
T ss_pred HHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999885 689
Q ss_pred EEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 729 TTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 729 TvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|+|+||||+++++.||+|++|++|+++|.|+|+||+++
T Consensus 506 tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 506 TVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred EEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999999999999999763
No 33
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.6e-88 Score=857.81 Aligned_cols=526 Identities=21% Similarity=0.271 Sum_probs=421.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 003981 233 IFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILF 312 (782)
Q Consensus 233 ~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~ 312 (782)
+..+.......+....+|.++|++++++|+.||+++++|+++||+++|++.+++.+...+. ..+..++.+++.+++++
T Consensus 1017 l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~--~~~~~~~~~i~~li~~~ 1094 (1560)
T PTZ00243 1017 LRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYL--YLLQCLFSICSSILVTS 1094 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3333444455566778999999999999999999999999999999999999999987765 35666777788888888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 003981 313 NIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSG 392 (782)
Q Consensus 313 ~~~~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~ 392 (782)
+.+|.+.+++++++++...+..++.+..+...+......+.+.+++.|+++|+++||+|+.|+.+.++|.+..+...+..
T Consensus 1095 ~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~ 1174 (1560)
T PTZ00243 1095 ASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCS 1174 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 88885544433332233333445666666677777778888999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 393 IKLGTFKSLNESLTRIAIYISLLALYCLGGSK--VKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERIN 470 (782)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~l--v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~ 470 (782)
+.......+......++..+..+++.+++.+. ...+.+++|.+..++.|...+..|+..+...+.+++.++.+++||.
T Consensus 1175 ~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~ 1254 (1560)
T PTZ00243 1175 YLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLL 1254 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655555555555555555444444444433 3456689999999999999999999999999999999999999999
Q ss_pred HHhcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhccccc-ccCCCCCcccEEEEeeEEEcCC
Q 003981 471 SILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSAN-SVCSFAWSGDICLEDVYFSYPL 549 (782)
Q Consensus 471 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~I~f~nVsF~Y~~ 549 (782)
++++..+.++....... ....+... +... .. +.........+. ..+..+..|.|+|+||+|+|++
T Consensus 1255 ~~~~~~~~e~~~~~~~~--~~~~~~~~---------~~~~-~~--~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~ 1320 (1560)
T PTZ00243 1255 YYTDEVPHEDMPELDEE--VDALERRT---------GMAA-DV--TGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYRE 1320 (1560)
T ss_pred HHHhcCCcccccccccc--cccccccc---------cccc-cc--ccccccccCCCcccCCCCCCCCeEEEEEEEEEeCC
Confidence 99964322110000000 00000000 0000 00 000000000000 0001123578999999999974
Q ss_pred CCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCccc
Q 003981 550 RPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVS 629 (782)
Q Consensus 550 ~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gT 629 (782)
+ .+++|+||||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+||+++++++||++|+||||||+||+||
T Consensus 1321 ~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gT 1399 (1560)
T PTZ00243 1321 G-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGT 1399 (1560)
T ss_pred C-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccccc
Confidence 3 456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC-CCEEEEeCCCCC
Q 003981 630 VGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN-APILILDEATSA 708 (782)
Q Consensus 630 IreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~-p~ILILDEaTSA 708 (782)
|||||..+ ++++|+||++||+.|+++|||.+||+||||.|||+|.+|||||||||||||||+++ |+||||||||||
T Consensus 1400 IreNIdp~---~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSa 1476 (1560)
T PTZ00243 1400 VRQNVDPF---LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATAN 1476 (1560)
T ss_pred HHHHhCcc---cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 99999865 36899999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc-cCchHHHHHHhh
Q 003981 709 LDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR-KGQYASLVCTQR 778 (782)
Q Consensus 709 LD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~-~g~Y~~L~~~q~ 778 (782)
||++||+.|+++|++..++||+|+||||++|+++||+|+|||+|+|+|.|+|+||+++ +|.|++|++.+.
T Consensus 1477 LD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1477 IDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999985 899999998654
No 34
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.5e-88 Score=860.30 Aligned_cols=511 Identities=23% Similarity=0.322 Sum_probs=405.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 003981 219 KVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGF 298 (782)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~ 298 (782)
.++++.++..++.++..+.....+.+...++|.++|++++++|++||+++++|+++||+++|++.+++.+...+. ..+
T Consensus 955 ~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~--~~~ 1032 (1495)
T PLN03232 955 VYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMN--MFM 1032 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHH--HHH
Confidence 334444555666677777788889999999999999999999999999999999999999999999999887654 245
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHH
Q 003981 299 RALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQM 378 (782)
Q Consensus 299 ~~~~~~i~~li~l~~~~~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~ 378 (782)
..++.+++.++++++++|...++++++.+++.+...++.+..+...+......+.+.+++.|+++|+++||+|++|+++.
T Consensus 1033 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~ 1112 (1495)
T PLN03232 1033 NQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMA 1112 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHH
Confidence 55556666666666666543332222211122222334444555666667777888999999999999999999998776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC----C-HHHHHHHHHHHHHHHHHHHHH
Q 003981 379 LMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVK-AGEL----S-VGIVASFIGYTFTLTFAVQGL 452 (782)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~-~g~l----t-~G~l~a~~~~~~~l~~pl~~l 452 (782)
+++.+..+...+..........+.... +..+..+++++.|.+.+. .|.+ . .+.+..+++|...+..|+..+
T Consensus 1113 ~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l 1189 (1495)
T PLN03232 1113 KINGKSMDNNIRFTLANTSSNRWLTIR---LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGV 1189 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 666555444433332221111111111 112222233333444444 3432 1 233444677888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCC
Q 003981 453 VNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSF 532 (782)
Q Consensus 453 ~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (782)
...+.+++.+.++++||.++++.+++++... . . ..+....
T Consensus 1190 ~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~---------~---~----------------------------~~~~~~~ 1229 (1495)
T PLN03232 1190 LRQASKAENSLNSVERVGNYIDLPSEATAII---------E---N----------------------------NRPVSGW 1229 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccc---------c---C----------------------------CCCCCCC
Confidence 9999999999999999999998654321100 0 0 0000011
Q ss_pred CCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh
Q 003981 533 AWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW 612 (782)
Q Consensus 533 ~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l 612 (782)
+..|.|+|+||+|+|+.+ .+++|+||||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|++++++++|
T Consensus 1230 p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1230 PSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred CCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHH
Confidence 235789999999999632 3579999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 613 ARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 613 R~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
|++|+||||||+||+|||||||.+++ +++|||+++|++.|+++|||+++|+||||+|||+|.+||||||||||||||
T Consensus 1309 R~~i~iVpQdp~LF~gTIr~NL~~~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARA 1385 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFSGTVRFNIDPFS---EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARA 1385 (1495)
T ss_pred HhhcEEECCCCeeeCccHHHHcCCCC---CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999883 589999999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhcc-CchH
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARK-GQYA 771 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~-g~Y~ 771 (782)
|+++|+||||||||||||++||+.|+++|++..++||+|+||||++|+++||+|+|||+|+|+|.|+|+||++++ |.|+
T Consensus 1386 LLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~ 1465 (1495)
T PLN03232 1386 LLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFF 1465 (1495)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 5999
Q ss_pred HHHHHhh
Q 003981 772 SLVCTQR 778 (782)
Q Consensus 772 ~L~~~q~ 778 (782)
+|++.+.
T Consensus 1466 ~l~~~~~ 1472 (1495)
T PLN03232 1466 RMVHSTG 1472 (1495)
T ss_pred HHHHHhC
Confidence 9998764
No 35
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7e-85 Score=788.94 Aligned_cols=569 Identities=24% Similarity=0.342 Sum_probs=458.3
Q ss_pred CchhHHHHHHHHHH-hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHHHHHHHH
Q 003981 159 NLITWGLLWSLFLK-HKLRLGLS-VLTLIGCTTCTLSMPIFSGRFFEVLIGARP--EPLWKLLSKVGLLYALEPIFTVIF 234 (782)
Q Consensus 159 ~~~~~~~l~~~l~~-~~~~~~l~-~l~~l~~~~~~l~~P~~~~~~id~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~ 234 (782)
....|+.++.|++. ..+..... +++.++...+....-+.+.+-.|.-..... ......+..++++.++..++..+.
T Consensus 799 G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~r 878 (1381)
T KOG0054|consen 799 GKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLR 878 (1381)
T ss_pred CEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 34567788888876 22222221 222232333333333333333332111110 112223333444555556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 003981 235 VMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNI 314 (782)
Q Consensus 235 ~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~ 314 (782)
.+.+...+.+....|...+++++++.|++|||.+++|.|+||+++|++.+++.+...+. ..+..++.+++.++++.+.
T Consensus 879 s~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~--~~~~~~~~~l~~~~vi~~~ 956 (1381)
T KOG0054|consen 879 SFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLE--FFLQSLLNVLGILVVISYV 956 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHH--HHHHHHHHHHHHHHHhhHH
Confidence 77778888899999999999999999999999999999999999999999999988775 3667777888889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 003981 315 APQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIK 394 (782)
Q Consensus 315 ~~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~ 394 (782)
.|++.++++.++++......+|.+..+...+.....++.+.+++.|+++|+.|||+|+.|+++.+++....+...+..+-
T Consensus 957 ~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~ 1036 (1381)
T KOG0054|consen 957 TPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFL 1036 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHH
Confidence 99888777766666666777888888888888889999999999999999999999999999999998877776666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 395 LGTFKSLNESLTRIAIYISLLALYCLGGSKVKA--GELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSI 472 (782)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~~--g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~l 472 (782)
......++..-..++..+ .++..+...+.. +.+++|.+...++|+..++..++.+.....++..-++|+|||.++
T Consensus 1037 ~~~a~RWla~Rle~ig~~---~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY 1113 (1381)
T KOG0054|consen 1037 SISANRWLAVRLELLGNL---VVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEY 1113 (1381)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHH
Confidence 332222222223333222 222223333322 227899999999999999999999999999999999999999999
Q ss_pred hcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCC
Q 003981 473 LSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPD 552 (782)
Q Consensus 473 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~ 552 (782)
.+.+++.+. + .+ . ..+....+.+|+|+|+|++.+|..+ .
T Consensus 1114 ~~~~~E~p~-----~--~~-----~----------------------------~~pp~~WP~~G~I~f~~~~~RYrp~-l 1152 (1381)
T KOG0054|consen 1114 TDIPSEAPL-----E--IE-----E----------------------------SRPPPSWPSKGEIEFEDLSLRYRPN-L 1152 (1381)
T ss_pred hcCCCCCCC-----C--Cc-----C----------------------------CCCCCCCCCCCeEEEEEeEEEeCCC-C
Confidence 987643111 0 00 0 0011223457999999999999743 4
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIre 632 (782)
++|||||||+|+|||+|||||++|||||||++.|.|+.+|.+|+|.|||+||.++++++||++++++||||.||+||||.
T Consensus 1153 p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~ 1232 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRF 1232 (1381)
T ss_pred cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 003981 633 NIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAV 712 (782)
Q Consensus 633 NI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~ 712 (782)
||. |.++.+|+|||+|++.|+++++|+++|+|+|++|.|+|.|+|-||||.+||||||||+++||||||||+++|++
T Consensus 1233 NLD---Pf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~ 1309 (1381)
T KOG0054|consen 1233 NLD---PFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPE 1309 (1381)
T ss_pred ccC---cccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChH
Confidence 997 56689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc-cCchHHHHHH
Q 003981 713 SERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR-KGQYASLVCT 776 (782)
Q Consensus 713 tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~-~g~Y~~L~~~ 776 (782)
|+..||+.|++..++||+|.||||++||.|+|||+|||+|+|+|.|++++|+++ ++.|++++..
T Consensus 1310 TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1310 TDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999976 6777665543
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4e-83 Score=811.44 Aligned_cols=513 Identities=17% Similarity=0.277 Sum_probs=413.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 003981 228 PIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGT 307 (782)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~ 307 (782)
.++.++..+++.+.+.+...+++.++|+++++.|+.||+++++|+++||+++|++.+++.+...+. ..+..++.+++.
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~--~~~~~~~~~i~~ 1016 (1490)
T TIGR01271 939 LALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLF--DFIQLTLIVLGA 1016 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 344455666777788899999999999999999999999999999999999999999999987765 356667778888
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHH
Q 003981 308 ICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLA 387 (782)
Q Consensus 308 li~l~~~~~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~ 387 (782)
++++++++|++++++++++++++++..++.+..+...+......+.+.+++.|+++|+.+||+|++|+.+.++|.+..+.
T Consensus 1017 l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~ 1096 (1490)
T TIGR01271 1017 IFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNL 1096 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888999987665444333333344556666666666677777889999999999999999999999999999988776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 388 YQQSGIKLGTFKSLNESLTRIAIYISLL--ALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAA 465 (782)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s 465 (782)
..+..........+......++..+..+ ++++++. ..++.|.+..+++|+..+..++..+...+.+++..++|
T Consensus 1097 ~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s 1171 (1490)
T TIGR01271 1097 HTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRS 1171 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444333322222222222222222111 1122222 23456666667778888888999999999999999999
Q ss_pred HHHHHHHhcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEE
Q 003981 466 VERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYF 545 (782)
Q Consensus 466 ~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF 545 (782)
++||.++++.+++.+.... .... .. ..+... ...+......+..|.|+|+||+|
T Consensus 1172 ~eRi~~~~~~~~e~~~~~~-----~~~~--~~----------------~~~~~~---~~~~~~~~~wp~~g~I~f~nVs~ 1225 (1490)
T TIGR01271 1172 VSRVFKFIDLPQEEPRPSG-----GGGK--YQ----------------LSTVLV---IENPHAQKCWPSGGQMDVQGLTA 1225 (1490)
T ss_pred HHHHHHHhcCCCccccccc-----cccc--cc----------------cccccc---cccCCCCCCCCCCCeEEEEEEEE
Confidence 9999999976543211000 0000 00 000000 00000000112357899999999
Q ss_pred EcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCC
Q 003981 546 SYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVL 625 (782)
Q Consensus 546 ~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~L 625 (782)
+|+.+ .+++|+||||+|+|||+|||||+||||||||+++|+|+|+ ++|+|+|||+|+++++++++|++|+||||||+|
T Consensus 1226 ~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~L 1303 (1490)
T TIGR01271 1226 KYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFI 1303 (1490)
T ss_pred EeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCcc
Confidence 99743 5689999999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred CcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCC
Q 003981 626 FSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEA 705 (782)
Q Consensus 626 F~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEa 705 (782)
|+|||||||... .+++|+++++||+.++++++|.++|+||||+|||+|.+|||||||||||||||+++|+|||||||
T Consensus 1304 F~GTIR~NLdp~---~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEa 1380 (1490)
T TIGR01271 1304 FSGTFRKNLDPY---EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEP 1380 (1490)
T ss_pred CccCHHHHhCcc---cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 999999999765 35899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhh
Q 003981 706 TSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQR 778 (782)
Q Consensus 706 TSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 778 (782)
||+||.+||+.|++.|++..++||+|+||||++++.+||+|+|||+|+|+|.|+|+||++++|.|++|++.+.
T Consensus 1381 TS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1381 SAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999998999999998654
No 37
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-82 Score=808.11 Aligned_cols=544 Identities=22% Similarity=0.260 Sum_probs=432.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 003981 165 LLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYAL---EPIFTVIFVMNMNTV 241 (782)
Q Consensus 165 ~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 241 (782)
+++.+++.+++.++.++++.++..++.++.|++++.++|.+...+.. +....+.+++++. ..++...+.+...++
T Consensus 291 l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 368 (1495)
T PLN03232 291 LLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA--WVGYVYAFLIFFGVTFGVLCESQYFQNVGRV 368 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888888888889999999999999999987543221 1111111122221 222221222333577
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 003981 242 WEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPI 321 (782)
Q Consensus 242 ~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali 321 (782)
+.++...++..+|+|+++++..++++.++|+++|++++|++++++++. .+. .++..++.+++++++++ +.+++.
T Consensus 369 ~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~--~l~~~p~~ii~~~~~l~---~~lg~~ 442 (1495)
T PLN03232 369 GFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLH--GLWSAPFRIIVSMVLLY---QQLGVA 442 (1495)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHH---HHHhHH
Confidence 888889999999999999999999999999999999999999999874 222 23344444444333332 223332
Q ss_pred HHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 322 LGVLV---LTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTF 398 (782)
Q Consensus 322 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 398 (782)
+++.+ +++..+..++.++.++..++..+..++..+.+.|.++||++||+|+||+.+.+++.+..++..+...+....
T Consensus 443 ~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~ 522 (1495)
T PLN03232 443 SLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLL 522 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 111122345566777777777888888889999999999999999999999999988777777666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 003981 399 KSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEI 478 (782)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~ 478 (782)
..+...+..... ..+.++++|++++.+|.+|+|.++++++++..+..|+..++..+..+.++.++++||.++++.++.
T Consensus 523 ~~~~~~~~~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~ 600 (1495)
T PLN03232 523 SAFNSFILNSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEER 600 (1495)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 544433222211 123346779999999999999999999999999999999999999999999999999999976432
Q ss_pred chhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceee
Q 003981 479 DDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNG 558 (782)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~ 558 (782)
.+. ..+ +. ....+.|+|+||+|+|+.++++++|+|
T Consensus 601 ~~~---------~~~----------------------------------~~--~~~~~~I~~~~vsF~y~~~~~~~vL~~ 635 (1495)
T PLN03232 601 ILA---------QNP----------------------------------PL--QPGAPAISIKNGYFSWDSKTSKPTLSD 635 (1495)
T ss_pred ccc---------ccC----------------------------------Cc--CCCCCcEEEEeeEEEcCCCCCCceeee
Confidence 100 000 00 011246999999999985445689999
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCC
Q 003981 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638 (782)
Q Consensus 559 Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~ 638 (782)
+||+|++||++||||+||||||||+++|+|+|+|++|.+. .+|++|+||+|+||||+|||||||+||+
T Consensus 636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~ 703 (1495)
T PLN03232 636 INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSWIFNATVRENILFGS 703 (1495)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCccccccccHHHHhhcCC
Confidence 9999999999999999999999999999999999998763 4677899999999999999999999996
Q ss_pred CCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH-
Q 003981 639 PDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLV- 717 (782)
Q Consensus 639 p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I- 717 (782)
| +++|++++|++.|+++++++.||+||||+|||+|.+||||||||||||||+|+|||||||||||||||+++|+.|
T Consensus 704 ~---~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~ 780 (1495)
T PLN03232 704 D---FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780 (1495)
T ss_pred c---cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 4 689999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhh
Q 003981 718 QDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQR 778 (782)
Q Consensus 718 ~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 778 (782)
+++++...++||+|+||||+++++.||+|++|++|+|+|+|+|+||+++++.|+++++.+.
T Consensus 781 ~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~ 841 (1495)
T PLN03232 781 DSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAG 841 (1495)
T ss_pred HHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcc
Confidence 4567777789999999999999999999999999999999999999999999999987643
No 38
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-82 Score=805.62 Aligned_cols=545 Identities=21% Similarity=0.277 Sum_probs=430.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 003981 165 LLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYA---LEPIFTVIFVMNMNTV 241 (782)
Q Consensus 165 ~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 241 (782)
+++.+++.+++.+++++++.++..++.++.|++++.++|.+...+.. ...+ ...+++++ +..++..-+.+...++
T Consensus 291 l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 368 (1622)
T PLN03130 291 LLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-WIGY-IYAFSIFVGVVLGVLCEAQYFQNVMRV 368 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777888888888888999999999999999999987643321 1111 11111111 1111111122234577
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 003981 242 WEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPI 321 (782)
Q Consensus 242 ~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali 321 (782)
+.++...++..+|+|+++++..++++.++|+++|++++|++++++++.. +. .++..++.+++++++++..-...+++
T Consensus 369 ~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~--~l~~~pl~ii~~~~lL~~~lg~~~l~ 445 (1622)
T PLN03130 369 GFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LH--TLWSAPFRIIIAMVLLYQQLGVASLI 445 (1622)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999998743 22 24445555555444444322211222
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 322 LGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSL 401 (782)
Q Consensus 322 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (782)
.++++++++.+..++.++.++..++..+..++..+.+.|.++||++||+|+||+.+.+++.+..++..+...+......+
T Consensus 446 g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~ 525 (1622)
T PLN03130 446 GSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAF 525 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222233345556666677777777788889999999999999999999999999887766655555444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Q 003981 402 NESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDA 481 (782)
Q Consensus 402 ~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~ 481 (782)
...+...+. ..+.++++|++++.+|.+|+|.++++++++..+..|+..++..+..+.++.++++||.++++.++..+.
T Consensus 526 ~~~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~ 603 (1622)
T PLN03130 526 NSFILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL 603 (1622)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 332222211 134566778999999999999999999999999999999999999999999999999999976432110
Q ss_pred hhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeE
Q 003981 482 LANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNL 561 (782)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl 561 (782)
..+ .. ....+.|+|+||+|+|+.++++++|+|+||
T Consensus 604 ---------~~~----------------------------------~~--~~~~~~I~~~nvsf~y~~~~~~~vL~~inl 638 (1622)
T PLN03130 604 ---------PNP----------------------------------PL--EPGLPAISIKNGYFSWDSKAERPTLSNINL 638 (1622)
T ss_pred ---------cCC----------------------------------cc--cCCCCceEEEeeEEEccCCCCCceeeceeE
Confidence 000 00 001246999999999985445689999999
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCc-cEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG-GRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~-G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~ 640 (782)
+|++||++|||||||||||||+++|+|+|+|++ |+|.+.| +|+||+|+||||+|||||||+||+|
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~-------------~Iayv~Q~p~LfngTIreNI~fg~~- 704 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG-------------TVAYVPQVSWIFNATVRDNILFGSP- 704 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC-------------eEEEEcCccccCCCCHHHHHhCCCc-
Confidence 999999999999999999999999999999999 9998654 5999999999999999999999965
Q ss_pred CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH-HH
Q 003981 641 ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLV-QD 719 (782)
Q Consensus 641 ~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I-~~ 719 (782)
.+++++++|++.|+++++|+.||+|++|+|||+|.+|||||||||+||||+|+||+||||||||||||+++++.| ++
T Consensus 705 --~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~ 782 (1622)
T PLN03130 705 --FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDK 782 (1622)
T ss_pred --ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999876 56
Q ss_pred HHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHh
Q 003981 720 ALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQ 777 (782)
Q Consensus 720 ~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q 777 (782)
++++..++||+|+||||+++++.||+|++|++|+|+|+|+|+||+++++.|+++++.+
T Consensus 783 ~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~ 840 (1622)
T PLN03130 783 CIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENA 840 (1622)
T ss_pred HhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhc
Confidence 7887788999999999999999999999999999999999999999999999998754
No 39
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.9e-82 Score=740.46 Aligned_cols=541 Identities=17% Similarity=0.169 Sum_probs=442.4
Q ss_pred hHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 162 TWGLLWSLFL-KHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNT 240 (782)
Q Consensus 162 ~~~~l~~~l~-~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (782)
.++.++++++ ++++.+++++++.++..++.+..|++++.++|.........++ .+++++++..++.++..++...
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 79 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQGSLF----SFGGLCLLALLFRIGADIFPAY 79 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888 9999999999999999999999999998888743211111111 1223344555667777788888
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 003981 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (782)
Q Consensus 241 ~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lal 320 (782)
.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++.. +. ..+..++.++++++++++++|.+++
T Consensus 80 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~--~~~~~~~~~~~~~~~l~~~~~~L~l 156 (555)
T TIGR01194 80 AGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FP--PIAIALAIFFFCIAYLAYLSVPMFA 156 (555)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999998864 43 2556667778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchH--HHHHHHHHHHHHHHHHHHHHHHH
Q 003981 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEK--RQMLMFGRQVLAYQQSGIKLGTF 398 (782)
Q Consensus 321 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~--~~~~~~~~~~~~~~~~~~~~~~~ 398 (782)
++++++++.++...++.++.++...+.++..+++++.+.|.+.|+++||+|+.++ .+.+++.+..+++++...+....
T Consensus 157 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
T TIGR01194 157 ITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILI 236 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8777666665656666666677777788888999999999999999999999954 56788888888888877766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 003981 399 KSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEI 478 (782)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~ 478 (782)
......+..++..+...+.+++|++. |.+|+|++++|+.|...+..|+..+.+.+..++++.++++|+.++++.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~ 313 (555)
T TIGR01194 237 FIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNE 313 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 54444444444444444445555543 799999999999999999999999999999999999999999999864221
Q ss_pred chhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCC--Cccce
Q 003981 479 DDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRP--DVVIL 556 (782)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~--~~~vL 556 (782)
++... ..+. .+ ...........++|+|+||+|+|++.+ ++++|
T Consensus 314 ~~~~~-------~~~~-~~---------------------------~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l 358 (555)
T TIGR01194 314 PEPEL-------ELSD-AD---------------------------NVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFAL 358 (555)
T ss_pred ccccc-------cccc-cc---------------------------cccccccCCCCceEEEEEEEEEeCCCCCCcCcee
Confidence 10000 0000 00 000000001235799999999997421 23699
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHc
Q 003981 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAY 636 (782)
Q Consensus 557 ~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~ 636 (782)
+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++++||+||++||++|+++|+
T Consensus 359 ~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~-- 436 (555)
T TIGR01194 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE-- 436 (555)
T ss_pred ccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHH
Q 003981 637 GLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERL 716 (782)
Q Consensus 637 G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~ 716 (782)
.| ++++++++++|+.+++++++.++|+||||. .+|||||||||+||||+++||||||||||||+||++||+.
T Consensus 437 -~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~ 508 (555)
T TIGR01194 437 -GE--HASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRF 508 (555)
T ss_pred -cc--chhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 23 478999999999999999999999999994 8999999999999999999999999999999999999999
Q ss_pred HHHHHH-Hh-cCCcEEEEEecChhHHHhcCeEEEEeCCEEEEe
Q 003981 717 VQDALN-HL-MKGRTTLVIAHRLSTVQNAHQIALCSDGRIAEL 757 (782)
Q Consensus 717 I~~~L~-~l-~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~ 757 (782)
|.+++. .+ .+++|+|+||||+++++.||+|+||++|+|+|.
T Consensus 509 i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 509 FYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 998874 33 468999999999999999999999999999974
No 40
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.3e-81 Score=678.89 Aligned_cols=546 Identities=25% Similarity=0.333 Sum_probs=477.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 166 LWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGAR-PEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEK 244 (782)
Q Consensus 166 l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (782)
+...+..++..++...+++.+..++.+..|+++-++.|.++... ..++..+..+.+++|++..++.+++...+.+++.+
T Consensus 14 ~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~ 93 (580)
T COG4618 14 LAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGER 93 (580)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888888889999999999999999999998654 34566666667778888899999999999999999
Q ss_pred HHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003981 245 VMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGV 324 (782)
Q Consensus 245 ~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~ 324 (782)
+...+...+|....+.+..- +..|+=.+-+ +|.++++.|++..-+. .+...--+-+++.++|.++|++.++.++
T Consensus 94 lD~~L~~~v~~a~~~~~l~~---~~~g~~~Q~L-rDL~qvR~Fltg~g~~--A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ 167 (580)
T COG4618 94 LDRQLNGPVFAASFSAPLLR---RGSGDGLQPL-RDLDQVRQFLTGTGLT--AFFDAPWMPLYLAVIFLFHPWLGLIALA 167 (580)
T ss_pred HHHHhccHHHHHHHhhHHhh---cCCCccccch-hhHHHHHHHHcCCCcc--hhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998777643 4445444444 8999999999875431 2222223556778889999999988877
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 325 LVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNES 404 (782)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (782)
...++..+.++-.+..++-.++..+...+.+..+.-+.+|.++|++.|+.....++|.+.+..+.+.+.+..-....+..
T Consensus 168 ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~ 247 (580)
T COG4618 168 GAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGA 247 (580)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 76666666666666666677777777778888899999999999999999999999999999999998888877888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhc
Q 003981 405 LTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALAN 484 (782)
Q Consensus 405 ~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~ 484 (782)
++..+-.+...+++.+|+|++++|++|.|.+++-..++.....|+......|.++..+..|++|+.+++...+....
T Consensus 248 ~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~--- 324 (580)
T COG4618 248 LSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE--- 324 (580)
T ss_pred HHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---
Confidence 88888888899999999999999999999999999999999999999999999999999999999999986432110
Q ss_pred ccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEe
Q 003981 485 GLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLK 564 (782)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~ 564 (782)
.-..+..+|.+.++++++.=|+. ++++|+||||+++
T Consensus 325 -------------------------------------------~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~ 360 (580)
T COG4618 325 -------------------------------------------RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQ 360 (580)
T ss_pred -------------------------------------------CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEec
Confidence 01112246889999999987753 6799999999999
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVS 644 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s 644 (782)
|||-+|||||||||||||+++|.|.++|++|.|++||-|+++++.+.+-++|||.|||..||+|||+|||+=. +++++
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf--~~~~d 438 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARF--GEEAD 438 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhc--cccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999744 24689
Q ss_pred HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 003981 645 KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHL 724 (782)
Q Consensus 645 ~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l 724 (782)
+|.|.+|++.|+.||.|.+||+||||.|||+|..|||||||||+||||||.||.++|||||-|+||.+.|+.+.++|.+.
T Consensus 439 ~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~ 518 (580)
T COG4618 439 PEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA 518 (580)
T ss_pred HHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred c-CCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 725 M-KGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 725 ~-~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
+ +|+|+|+||||++.+..+|+|+||++|++...|+-+|.+++
T Consensus 519 k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 519 KARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 5 69999999999999999999999999999999999999875
No 41
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-78 Score=734.79 Aligned_cols=546 Identities=23% Similarity=0.291 Sum_probs=433.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 003981 165 LLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLY---ALEPIFTVIFVMNMNTV 241 (782)
Q Consensus 165 ~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 241 (782)
+++..++.+++.+++..++..+...+..+.|.++..+++.+...+ ...+....+.++++ ++..++.--+.+...++
T Consensus 191 l~~al~~~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~-~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~ 269 (1381)
T KOG0054|consen 191 LLRALLRTFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKR-LPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRV 269 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCC-cccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 455666777888877777777777779999999999999886542 22222222222222 23333333345566788
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH-HhhHHHH
Q 003981 242 WEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFN-IAPQLAP 320 (782)
Q Consensus 242 ~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~-~~~~Lal 320 (782)
+.++...+-..+|+|.++++...-..+++|+++|.++.|++++.++.... + ..+...+.+++++.+++. ++|. ++
T Consensus 270 g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~--h-~~w~~Plqi~~~l~lLy~~LG~s-a~ 345 (1381)
T KOG0054|consen 270 GMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFL--H-LLWSAPLQIILALYLLYGLLGPS-AL 345 (1381)
T ss_pred hhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHhChH-HH
Confidence 88999999999999999999998888999999999999999999998543 2 356666666666665554 3333 22
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (782)
Q Consensus 321 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (782)
+.++++++++.+..++.++.++..++..+...+-...++|.++||++||+|+||+.+.++.++..++-.+.-.+.....+
T Consensus 346 ~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~ 425 (1381)
T KOG0054|consen 346 AGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSA 425 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333444555666666655555555555899999999999999999999888887766655555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 003981 401 LNESLTRIAIYISLLALYCLGGSK-VKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEID 479 (782)
Q Consensus 401 ~~~~~~~~~~~l~~~~il~~G~~l-v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~ 479 (782)
+...+......+..+ +.++++. ...+.+|+...++.+++++.+..|+..++..+..+.++.+|++|+.+++..++.+
T Consensus 426 ~~~~~~~~~p~lv~~--~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~ 503 (1381)
T KOG0054|consen 426 LNSFLNFFSPVLVSV--VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELD 503 (1381)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 554444333333332 2334444 5567889999999999999999999999999999999999999999999876543
Q ss_pred hhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeee
Q 003981 480 DALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGL 559 (782)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~I 559 (782)
+... .. ......+..|+++|.+|+|+.....+.|+||
T Consensus 504 ~~~~--------~~-----------------------------------~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dI 540 (1381)
T KOG0054|consen 504 PDSV--------ER-----------------------------------SPDEAGENAIEIKNGSFSWDSESPEPTLKDI 540 (1381)
T ss_pred cccc--------cc-----------------------------------CCCCCCCceEEEeeeeEecCCCCCcccccce
Confidence 2200 00 0000122359999999999864345699999
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCC
Q 003981 560 NLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639 (782)
Q Consensus 560 sl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p 639 (782)
||+|++|+++||||++|||||+|++.|+|.++..+|+|.++|. +|||||+||||||||||||+||.|
T Consensus 541 n~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~ 607 (1381)
T KOG0054|consen 541 NFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSP 607 (1381)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCcc
Confidence 9999999999999999999999999999999999999999998 999999999999999999999976
Q ss_pred CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH-HHHHHHH
Q 003981 640 DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDA-VSERLVQ 718 (782)
Q Consensus 640 ~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~-~tE~~I~ 718 (782)
.+++.+.++++.|+++.+++.||+|+.|+|||||.||||||||||+||||+|+|+||++||||.||||+ +..+.++
T Consensus 608 ---~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~ 684 (1381)
T KOG0054|consen 608 ---YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFE 684 (1381)
T ss_pred ---ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999999 6667788
Q ss_pred HHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHH
Q 003981 719 DALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCT 776 (782)
Q Consensus 719 ~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~ 776 (782)
+||+.+.++||+|+|||+++.+++||+|+||++|+|+|.|+|+||++.++.|.++.+.
T Consensus 685 ~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~ 742 (1381)
T KOG0054|consen 685 ECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHE 742 (1381)
T ss_pred HHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhc
Confidence 8999999999999999999999999999999999999999999999999999998543
No 42
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=9.8e-77 Score=691.94 Aligned_cols=532 Identities=18% Similarity=0.220 Sum_probs=418.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 165 LLWSLFLKHKLRLGLSVLTLIGCTTCTLSM-PIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWE 243 (782)
Q Consensus 165 ~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~-P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (782)
+++.+++++++.+++.+++.++..++.++. |++.+.++|.+.. ....+... +++.++..++.++..+....++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 77 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-SLLVLPEF----LGLLLLLMAVTLGSQLALTTLGH 77 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999998888888888888774 7788888986532 11111111 11122223455666777788889
Q ss_pred HHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003981 244 KVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILG 323 (782)
Q Consensus 244 ~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l 323 (782)
++..++|.++|+|++++|+++|+++++|++++|+++|++.+..++.. ++ ..+..++.++++++++++++|+++++++
T Consensus 78 ~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~--~~~~~~~~~i~~~~~l~~~~~~l~li~l 154 (547)
T PRK10522 78 HFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LP--ELVQGIILTLGSAAYLAWLSPKMLLVTA 154 (547)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999987653 33 3566777888888999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCch---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 324 VLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGE---KRQMLMFGRQVLAYQQSGIKLGTFKS 400 (782)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E---~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (782)
+++++.+++..++.++.++..++.++..+++++.+.|.++|+++++ ++.+ +.+.++|++..+++.+...+......
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (547)
T PRK10522 155 IWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHL 233 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Confidence 7777776667777777777778888889999999999999999996 4443 45678888888877777666555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Q 003981 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (782)
Q Consensus 401 ~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~ 480 (782)
....+..++..+...+++++++.. +..+.+.+.++..+...+..|+..+...+..++.+.++.+|+.++++.+++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~ 310 (547)
T PRK10522 234 SAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAE 310 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 333333222222222223333322 12244444444444555778999999999999999999999999975432111
Q ss_pred hhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeee
Q 003981 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLN 560 (782)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Is 560 (782)
. + . ... .+..+.|+|+||+|+|++ ++++|+|+|
T Consensus 311 ~-----------~---~------------------------------~~~-~~~~~~i~~~~v~f~y~~--~~~~l~~i~ 343 (547)
T PRK10522 311 F-----------P---R------------------------------PQA-FPDWQTLELRNVTFAYQD--NGFSVGPIN 343 (547)
T ss_pred c-----------c---c------------------------------ccc-cCcCceEEEEEEEEEeCC--CCeEEecce
Confidence 0 0 0 000 001246999999999973 357999999
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCC
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~ 640 (782)
|+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+||+++|++||+|| +
T Consensus 344 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~--- 417 (547)
T PRK10522 344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G--- 417 (547)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c---
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 3
Q ss_pred CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 003981 641 ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDA 720 (782)
Q Consensus 641 ~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~ 720 (782)
+++++++++++++.+++++++. +|+|. .+|.+|||||||||+||||++++|+|||||||||+||+++|+.|.++
T Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~ 491 (547)
T PRK10522 418 KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQV 491 (547)
T ss_pred CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 2477888988888888877664 35553 25899999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCcEEEEEecChhHHHhcCeEEEEeCCEEEEe-cCHHHHHhcc
Q 003981 721 LNHLM--KGRTTLVIAHRLSTVQNAHQIALCSDGRIAEL-GTHFELLARK 767 (782)
Q Consensus 721 L~~l~--~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~-Gth~eLl~~~ 767 (782)
+.+.. +++|+|+||||+++++.||+|++|++|+|+|. |+|.+-..++
T Consensus 492 l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~~~~~~ 541 (547)
T PRK10522 492 LLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAASRD 541 (547)
T ss_pred HHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchhhhhhh
Confidence 97654 48999999999999999999999999999986 7777665554
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.3e-74 Score=728.98 Aligned_cols=548 Identities=20% Similarity=0.229 Sum_probs=429.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 164 GLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEP-L-WKLLSKVGLLYALEPIFTVIFVMNMNTV 241 (782)
Q Consensus 164 ~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~-l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (782)
.+++.+++.+++.++..+++.++..++.++.|++++.++|.+....... . +.+...+++++++.+++...+.+...++
T Consensus 306 sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (1522)
T TIGR00957 306 SLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVS 385 (1522)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677778888888888889999999999999999999875432211 1 1112222223334444443344556778
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 003981 242 WEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPI 321 (782)
Q Consensus 242 ~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali 321 (782)
+.++...++..+|+|+++++..++++.++|+++|++++|++++..+... +. .++..++.+++++++++..-.+.+++
T Consensus 386 ~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~--~~~~~~~~i~~~~~ll~~~~g~~~l~ 462 (1522)
T TIGR00957 386 GMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATY-IN--MIWSAPLQVILALYFLWLNLGPSVLA 462 (1522)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 8899999999999999999999999999999999999999999886632 21 24444555555544443322222222
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 322 LGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSL 401 (782)
Q Consensus 322 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (782)
.++++++++.+..++.++.++..++..+..++..+.+.|.++||++||+++||+.+.+++++..++..+...+......+
T Consensus 463 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~ 542 (1522)
T TIGR00957 463 GVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV 542 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333334445666667777777777777889999999999999999999999999988776665554444444333
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 003981 402 NESLTRIAIYISL--LALYCLGGSKVKA--GELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTE 477 (782)
Q Consensus 402 ~~~~~~~~~~l~~--~~il~~G~~lv~~--g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~ 477 (782)
.. ++..... +.++.++.+.+.. +.++++.+++.++++..+..|+..++..+..++++.++++||.++++.++
T Consensus 543 ~~----~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~ 618 (1522)
T TIGR00957 543 GT----FTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEE 618 (1522)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 22 2222221 2223345666663 67899999999999999999999999999999999999999999997653
Q ss_pred cchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCcccee
Q 003981 478 IDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILN 557 (782)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~ 557 (782)
.++.. . .. .... ....+.|+++|++|+|+.+ ++++|+
T Consensus 619 ~~~~~----------~--~~-----------------------------~~~~-~~~~~~i~~~~~~~~~~~~-~~~~l~ 655 (1522)
T TIGR00957 619 LEPDS----------I--ER-----------------------------RTIK-PGEGNSITVHNATFTWARD-LPPTLN 655 (1522)
T ss_pred ccccc----------c--cc-----------------------------cccC-CCCCCcEEEEEeEEEcCCC-CCceee
Confidence 22110 0 00 0000 0012369999999999742 457999
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcC
Q 003981 558 GLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYG 637 (782)
Q Consensus 558 ~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G 637 (782)
|+||+|++||+++||||||||||||+++|+|+++|++|+|.+||. |+||+|+||+|++||||||.||
T Consensus 656 ~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~yv~Q~~~l~~~Ti~eNI~~g 722 (1522)
T TIGR00957 656 GITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS-------------VAYVPQQAWIQNDSLRENILFG 722 (1522)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCE-------------EEEEcCCccccCCcHHHHhhcC
Confidence 999999999999999999999999999999999999999999984 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 003981 638 LPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLV 717 (782)
Q Consensus 638 ~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I 717 (782)
.+ .+++++.++++.|++.+++..+|+|++|.+||+|.+|||||||||+||||++++|+|+||||||||||+.+++.|
T Consensus 723 ~~---~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i 799 (1522)
T TIGR00957 723 KA---LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 799 (1522)
T ss_pred Cc---cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence 64 467888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---hcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHh
Q 003981 718 QDALNH---LMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQ 777 (782)
Q Consensus 718 ~~~L~~---l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q 777 (782)
.+.+.+ +.+++|+|+|||+++.++.||+|++|++|+|+++|+|+|++++++.|++++..+
T Consensus 800 ~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 800 FEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTY 862 (1522)
T ss_pred HHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhh
Confidence 999853 567899999999999999999999999999999999999999999999988643
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.6e-71 Score=700.55 Aligned_cols=541 Identities=19% Similarity=0.273 Sum_probs=427.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 165 LLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEP---LWKLLSKVGLLYALEPIFTVIFVMNMNTV 241 (782)
Q Consensus 165 ~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (782)
+++.+++.+++.+++..+..++..++.++.|++++.+++.+....... .+.+...+++++++..++.....+...++
T Consensus 70 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (1490)
T TIGR01271 70 LLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHL 149 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777888888888888888999999999999999874322111 11222233334444445555555666778
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 003981 242 WEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPI 321 (782)
Q Consensus 242 ~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali 321 (782)
+.++...+...+|+|+++++...+++.++|+++|++++|++++.+.+.... .++...+.+++++++++.+.++.+++
T Consensus 150 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~---~~~~~pi~i~~~~~lL~~~~G~~~l~ 226 (1490)
T TIGR01271 150 GMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAH---FVWIAPLQVILLMGLIWELLEVNGFC 226 (1490)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999999875432 24455666666666666655555555
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 322 LGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSL 401 (782)
Q Consensus 322 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (782)
.++++++++.+..++.++..+..++..+...+..+.+.|.++||++||+|+||+.+.+++.+..++..+...+......+
T Consensus 227 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~ 306 (1490)
T TIGR01271 227 GLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYF 306 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666777777777777777778889999999999999999999998888877666655555555444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCccch
Q 003981 402 NESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQ-GLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (782)
Q Consensus 402 ~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~-~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~ 480 (782)
...+..+.. ..+.++.+++|.+..+ ++++.++++++++..+..|+. .++..+..+.++.++++||.++|+.++.++
T Consensus 307 ~~~~~~~~~--~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~ 383 (1490)
T TIGR01271 307 YSSAFFFSG--FFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKT 383 (1490)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 332222222 2334455567776655 789999999999999988874 799999999999999999999998653211
Q ss_pred hhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCC----------
Q 003981 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLR---------- 550 (782)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~---------- 550 (782)
. . . . .....|+++|++|+|+..
T Consensus 384 ~-~---------~---~-----------------------------------~~~~~i~~~~~~f~~~~~~~~~~~~~~~ 415 (1490)
T TIGR01271 384 L-E---------Y---N-----------------------------------LTTTEVEMVNVTASWDEGIGELFEKIKQ 415 (1490)
T ss_pred c-c---------c---c-----------------------------------CCCCceEEecceEecCCccccccccccc
Confidence 0 0 0 0 001124445555554310
Q ss_pred ---------------------CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh
Q 003981 551 ---------------------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK 609 (782)
Q Consensus 551 ---------------------~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~ 609 (782)
..+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.
T Consensus 416 ~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~------- 488 (1490)
T TIGR01271 416 NNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------- 488 (1490)
T ss_pred cccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE-------
Confidence 0136899999999999999999999999999999999999999999999994
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
|+||+|+||||++||+|||+||.+ .+++++.++++.|++++++..+|+|++|.|||+|.+|||||||||+|
T Consensus 489 ------iayv~Q~~~l~~~Ti~eNI~~g~~---~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~l 559 (1490)
T TIGR01271 489 ------ISFSPQTSWIMPGTIKDNIIFGLS---YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISL 559 (1490)
T ss_pred ------EEEEeCCCccCCccHHHHHHhccc---cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHH
Confidence 999999999999999999999954 45677888888899999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccC
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQD-ALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKG 768 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~-~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g 768 (782)
|||++++|+||||||||||||+.+++.|.+ +++++.+++|+|+|||+++.+..||+|++|++|+|++.|+|+|+.+.++
T Consensus 560 ARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~ 639 (1490)
T TIGR01271 560 ARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRP 639 (1490)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcCh
Confidence 999999999999999999999999999987 5778888999999999999999999999999999999999999998877
Q ss_pred chHHHHH
Q 003981 769 QYASLVC 775 (782)
Q Consensus 769 ~Y~~L~~ 775 (782)
.|.+.+.
T Consensus 640 ~~~~~~~ 646 (1490)
T TIGR01271 640 DFSSLLL 646 (1490)
T ss_pred HHHHHHh
Confidence 7877663
No 45
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4.1e-71 Score=654.44 Aligned_cols=549 Identities=16% Similarity=0.169 Sum_probs=434.5
Q ss_pred HHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH----HHHHHHHHHHHHHHHHHH
Q 003981 163 WGLLWSLFLKHKL-----RLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWK----LLSKVGLLYALEPIFTVI 233 (782)
Q Consensus 163 ~~~l~~~l~~~~~-----~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~ 233 (782)
++.++++++++++ .+++.+++.++.+++.+..|++.+.++|.++..+...+.. +...++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777776 4667777888888999999999999999987544332322 122222333444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 003981 234 FVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFN 313 (782)
Q Consensus 234 ~~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~ 313 (782)
..++...+..++...++.+.|++....+..+|++ ++|++++|+++|++.+.+.+...+. .++..++.++++++.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~--~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYS--NLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 5666667777888889999999988999999987 7899999999999999999988775 356777777777777776
Q ss_pred -HhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 003981 314 -IAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSG 392 (782)
Q Consensus 314 -~~~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~ 392 (782)
++|.+++++++.+|+..++..++.++..+..++.++..+++.+.+.|.++|+++||+|+.|+.+.++|++..+++.+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-hc----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHH
Q 003981 393 IKLGTFKSLNESLTRIAIYI--SLLALYCLGGSKV-KA----GELSVGIVAS-FIGY---TFTLTFAVQGLVNTFGDLRG 461 (782)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l--~~~~il~~G~~lv-~~----g~lt~G~l~a-~~~~---~~~l~~pl~~l~~~~~~l~~ 461 (782)
.+..++.+...++..++... ..+.+++.|...+ .+ |.+|+|.+++ |+.+ +..+..|+..+.+.+.++++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888887777643 3333334444333 22 7899998776 5555 56779999999999999999
Q ss_pred HHHHHHHHHHHhcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEE
Q 003981 462 TFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLE 541 (782)
Q Consensus 462 a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~ 541 (782)
+.++.+|+.++++.+++.+.... ..+..++. .+. . ........ .+.........+.|+++
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~------~~~~~~~~-------~~~----~--~~~~~~~~-~~~~~~~~~~~~~i~~~ 455 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNF------KRPRVEEI-------ESG----R--EGGRNSNL-VPGRGIVEYQDNGIKFE 455 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc------cccccccc-------ccc----c--cccccccc-cccccccccCCCeEEEE
Confidence 99999999999975321110000 00000000 000 0 00000000 00000001123569999
Q ss_pred eeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcc
Q 003981 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQ 621 (782)
Q Consensus 542 nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q 621 (782)
||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+|.+++ |++|+||+|
T Consensus 456 nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q 522 (659)
T TIGR00954 456 NIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQ 522 (659)
T ss_pred eeEEECCC--CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECC
Confidence 99999973 34799999999999999999999999999999999999999999999874 567999999
Q ss_pred cCCCCcccHHHHHHcCCC-----CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 622 EPVLFSVSVGENIAYGLP-----DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 622 ~~~LF~gTIreNI~~G~p-----~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
+|++|++|++|||.++.. +++.++++++++++.+++++++.. |.||||..+ .+.+||||||||++||||++++
T Consensus 523 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~ 600 (659)
T TIGR00954 523 RPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHK 600 (659)
T ss_pred CCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcC
Confidence 999999999999999742 123678999999999999999887 999999987 5779999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeC
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSD 751 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~ 751 (782)
|+++|||||||+||+++|+.+.+.+++. ++|+|+||||+++++.||+|++|+.
T Consensus 601 p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 601 PQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999999999999999999999873 8999999999999999999999973
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.5e-68 Score=678.87 Aligned_cols=595 Identities=18% Similarity=0.211 Sum_probs=437.4
Q ss_pred chhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 160 LITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPL--WKLLSKVGLLYALEPIFTVIFVMN 237 (782)
Q Consensus 160 ~~~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~ 237 (782)
+..+.+++.+++.+++.++..+++.++..++.++.|++++.+++.+...+.... +.++..++++.++..++...+.+.
T Consensus 229 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~ 308 (1560)
T PTZ00243 229 PKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQSVCLHRFYYI 308 (1560)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888899999999999999999999999999999987633222111 112222233334445555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhh--ccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 003981 238 MNTVWEKVMSIVKAQIFRRVLIQKAEFFD--RYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIA 315 (782)
Q Consensus 238 ~~~~~~~~~~~lr~~lf~kll~lp~~~f~--~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~ 315 (782)
..+.+.++...++..+|+|+++++...+. +.++|+++|++++|++++.+++.... .++...+.+++++++++.+.
T Consensus 309 ~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~---~l~~~Pl~li~~~~lL~~~l 385 (1560)
T PTZ00243 309 SIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCM---YLWSSPMVLLLSILLLSRLV 385 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999998876 56899999999999999999985533 35666667777777777665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 003981 316 PQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKL 395 (782)
Q Consensus 316 ~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~ 395 (782)
.+.+++.++++++++.+..++.++.....++..+..++-.+.++|.++|||+||+++||+.+.+++.+..++..+...+.
T Consensus 386 G~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~ 465 (1560)
T PTZ00243 386 GWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDV 465 (1560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55665544444444445556667777777776677777778999999999999999999999999988766666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003981 396 GTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILST 475 (782)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~ 475 (782)
.....+...+......+. .++.+++|.+..|.+|++.++++++++..+..|+..++..+..+.++.+|++||.++|+.
T Consensus 466 ~~~~~~~~~~~~~~p~l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~ 543 (1560)
T PTZ00243 466 QLARVATSFVNNATPTLM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLEC 543 (1560)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 555444433333322222 223456788889999999999999999999999999999999999999999999999986
Q ss_pred Cccchhhhccc-ccccc-cccchhhhhhhhhccCCCCc--ccccc----------hhhhhhcccc-cccCCCCCcccEEE
Q 003981 476 TEIDDALANGL-ERDIQ-QKHVEDENIKLFLFDGSNGK--HQHLN----------MHYMSHLKSA-NSVCSFAWSGDICL 540 (782)
Q Consensus 476 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~~-~~~~~~~~~g~I~f 540 (782)
++.+....... +.... ..............+..-.+ +.... .......... .........+.+.+
T Consensus 544 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1560)
T PTZ00243 544 DNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVV 623 (1560)
T ss_pred ccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc
Confidence 54211000000 00000 00000000000000000000 00000 0000000000 00000011235677
Q ss_pred EeeEEEcCCC-------------------------------------CCccceeeeeEEEeCCcEEEEECCCCCcHHHHH
Q 003981 541 EDVYFSYPLR-------------------------------------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIV 583 (782)
Q Consensus 541 ~nVsF~Y~~~-------------------------------------~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl 583 (782)
+|++|+++.. .++++|+||||+|++|++++|+||+|||||||+
T Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL 703 (1560)
T PTZ00243 624 EDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLL 703 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHH
Confidence 7777765310 134689999999999999999999999999999
Q ss_pred HHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHh
Q 003981 584 QLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIIS 663 (782)
Q Consensus 584 ~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~ 663 (782)
++|+|+++|++|+|.+++ +|+||+|+|++|++||+|||.++.+ .+++++.++++.|+++++++.
T Consensus 704 ~~i~G~~~~~~G~i~~~~-------------~i~yv~Q~~~l~~~Tv~enI~~~~~---~~~~~~~~~~~~~~l~~~l~~ 767 (1560)
T PTZ00243 704 QSLLSQFEISEGRVWAER-------------SIAYVPQQAWIMNATVRGNILFFDE---EDAARLADAVRVSQLEADLAQ 767 (1560)
T ss_pred HHHhcCCCCCCcEEEECC-------------eEEEEeCCCccCCCcHHHHHHcCCh---hhHHHHHHHHHHhhhHHHHHH
Confidence 999999999999998753 4999999999999999999999854 456778899999999999999
Q ss_pred CCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhcCCcEEEEEecChhHHHh
Q 003981 664 LPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQ-DALNHLMKGRTTLVIAHRLSTVQN 742 (782)
Q Consensus 664 LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~-~~L~~l~~~kTvIvIaHRLsti~~ 742 (782)
+|+|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.+++.+. +++....+++|+|+|||+++.+..
T Consensus 768 l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ 847 (1560)
T PTZ00243 768 LGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPR 847 (1560)
T ss_pred hhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999999999999999998777665 456556679999999999999999
Q ss_pred cCeEEEEeCCEEEEecCHHHHHhccCchHHHHHH
Q 003981 743 AHQIALCSDGRIAELGTHFELLARKGQYASLVCT 776 (782)
Q Consensus 743 aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~ 776 (782)
||+|++|++|+|+++|+|+|+++. +.|.++...
T Consensus 848 ad~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 880 (1560)
T PTZ00243 848 ADYVVALGDGRVEFSGSSADFMRT-SLYATLAAE 880 (1560)
T ss_pred CCEEEEEECCEEEEecCHHHHHhC-hHHHHHHHh
Confidence 999999999999999999999874 568777654
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.3e-56 Score=473.36 Aligned_cols=238 Identities=22% Similarity=0.441 Sum_probs=224.3
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
|.|+|+||+|+|+.+ +.++|+||||+|++||+++|||++|||||||+++|+|+++ ++|+|++||.++..++...+|+.
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999742 4579999999999999999999999999999999999998 79999999999999999999999
Q ss_pred eEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 616 VSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 616 Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
|+||||++++|++||+|||.+.. ..++++++++++.+++++++.++|+||+|.++|+|.+||||||||++||||+++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~ 155 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS 155 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999997432 257899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHH
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVC 775 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~ 775 (782)
+|+||||||||++||+.+++.+++.|++..+++|+|+||||+.++..||+|+||++|+|+|.|++++|++.++.|++++.
T Consensus 156 ~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 235 (275)
T cd03289 156 KAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAIS 235 (275)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHh
Confidence 99999999999999999999999999988889999999999999999999999999999999999999998888888886
Q ss_pred Hhh
Q 003981 776 TQR 778 (782)
Q Consensus 776 ~q~ 778 (782)
...
T Consensus 236 ~~~ 238 (275)
T cd03289 236 PSD 238 (275)
T ss_pred hcc
Confidence 543
No 48
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-53 Score=460.74 Aligned_cols=225 Identities=29% Similarity=0.459 Sum_probs=199.7
Q ss_pred cccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCC--CC
Q 003981 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLR--TF 607 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~--~i 607 (782)
.+.|+|+||+|+|++. ..++|+||||+|++||++||||++|||||||+++|+|+++ |++|+|.+||+++. .+
T Consensus 78 ~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4579999999999742 4579999999999999999999999999999999999997 57999999999997 45
Q ss_pred ChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHH-----HHHHHHhcchhHHHhCCCCccccccCCCCCCChh
Q 003981 608 DKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDI-----IKAAKAANAHDFIISLPQGYDTLVGERGGLLSGG 682 (782)
Q Consensus 608 ~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei-----~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGG 682 (782)
+...+|+.++||||+|++|++||+|||.|+......++++. .++++.+++ ++++++.++++|.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCHH
Confidence 56788999999999999999999999998743223444444 444555554 456678999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHH
Q 003981 683 QRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 683 QrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~ 761 (782)
|||||+||||++++|+|||||||||+||+.+.+.+++.|+++.+++|+|+|||++.++.. ||+|+||++|+|+|.|+++
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999999889999999999999988 9999999999999999999
Q ss_pred HHHhcc
Q 003981 762 ELLARK 767 (782)
Q Consensus 762 eLl~~~ 767 (782)
++....
T Consensus 310 ~l~~~~ 315 (329)
T PRK14257 310 TIFIHP 315 (329)
T ss_pred HHhcCC
Confidence 998643
No 49
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.7e-50 Score=422.35 Aligned_cols=236 Identities=52% Similarity=0.768 Sum_probs=220.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|+.+ +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...+...+|+.|+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999742 357999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA 697 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p 697 (782)
|++|++++|+.|++|||.++.+ ..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++.+|
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP 157 (237)
T ss_pred EEcCCchhccchHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence 9999999999999999998743 34567788888889999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHH
Q 003981 698 PILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCT 776 (782)
Q Consensus 698 ~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~ 776 (782)
++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.++++++.+.|+.+++.
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 236 (237)
T cd03252 158 RILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQL 236 (237)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHhc
Confidence 9999999999999999999999999988889999999999999999999999999999999999999999999988754
No 50
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.5e-51 Score=399.80 Aligned_cols=216 Identities=33% Similarity=0.510 Sum_probs=190.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC-CCChHhhhhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR-TFDKSEWARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~-~i~~~~lR~~I 616 (782)
|+++||+.+|. +..||+|||++|++||.++|+||||||||||+++|.++-+|++|+|.+||.++. ..+...+|+++
T Consensus 3 i~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred EEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 89999999996 457999999999999999999999999999999999999999999999998763 33789999999
Q ss_pred EEEcccCCCC-cccHHHHHHcCCCC-CCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 617 SIVNQEPVLF-SVSVGENIAYGLPD-ENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 617 a~V~Q~~~LF-~gTIreNI~~G~p~-~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
|+|+|+..|| +-|+-|||+++.-. ...+. +.-.+.++++++.|-....| ..|||||+||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 9999999999 58999999987200 01222 23345566777777666666 67999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|||.-+|+|+++|||||||||+.-..|.+.++++. .|.|.|+|||-+...++ ||||+.||+|+|+|+|+++++..+.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 99999999999999999999999999999998886 58899999999999987 9999999999999999999998764
No 51
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-49 Score=420.83 Aligned_cols=240 Identities=32% Similarity=0.490 Sum_probs=223.2
Q ss_pred CcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhh
Q 003981 534 WSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWA 613 (782)
Q Consensus 534 ~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR 613 (782)
..|.|+++|++++|+.. +.++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|++||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46789999999999742 35799999999999999999999999999999999999999999999999999999988999
Q ss_pred hceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 614 RVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
+.|+||+|++.+|++|++||+.+.. ....++++++++.+++.+++..+|.|++|.+++.+.+||||||||++||||+
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC---KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC---CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999997652 2346778889999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc-cCchHH
Q 003981 694 LKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR-KGQYAS 772 (782)
Q Consensus 694 lr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~-~g~Y~~ 772 (782)
+++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|+|++.|+++++.+. ++.|++
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~ 251 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFAS 251 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHH
Confidence 9999999999999999999999999999988789999999999999999999999999999999999999876 577888
Q ss_pred HHHHh
Q 003981 773 LVCTQ 777 (782)
Q Consensus 773 L~~~q 777 (782)
++..|
T Consensus 252 ~~~~~ 256 (257)
T cd03288 252 LVRTD 256 (257)
T ss_pred HHhcc
Confidence 88765
No 52
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-50 Score=413.30 Aligned_cols=218 Identities=34% Similarity=0.505 Sum_probs=191.2
Q ss_pred EEEEeeEEEcCCC--CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh---Hhh
Q 003981 538 ICLEDVYFSYPLR--PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK---SEW 612 (782)
Q Consensus 538 I~f~nVsF~Y~~~--~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~---~~l 612 (782)
|+|+|||+.|+.. ....+|+||||+|++||..||||.||+|||||++++-++-.|++|+|.+||+|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999852 13579999999999999999999999999999999999999999999999998888775 456
Q ss_pred hhceEEEcccCCCCc-ccHHHHHHcCCCCCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 613 ARVVSIVNQEPVLFS-VSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 613 R~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
|++||+++|+..|++ .|+.|||+|...-...+. +++.+.++.+++.|.-.+-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 789999999999998 899999998532222333 44566777777777655544 78999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
+|||||..+|+||+.|||||||||+|-+.|.+.|++.. -|-|+++|||.++.+++ |||+.||++|+|+|+|+-.|+.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999997764 38899999999999988 9999999999999999998887
Q ss_pred hc
Q 003981 765 AR 766 (782)
Q Consensus 765 ~~ 766 (782)
.+
T Consensus 231 ~~ 232 (339)
T COG1135 231 AN 232 (339)
T ss_pred cC
Confidence 65
No 53
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-49 Score=409.79 Aligned_cols=235 Identities=51% Similarity=0.811 Sum_probs=219.7
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|++ +..+|+|+||+|++|++++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999963 346999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA 697 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p 697 (782)
|++|++.+|++|++||+.++.+ ..+++++.++++.+++.+++..+|.|++|.+..+...||||||||++|||||+++|
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC--CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999854 35677788889999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHH
Q 003981 698 PILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCT 776 (782)
Q Consensus 698 ~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~ 776 (782)
++|||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+..||+|++|++|++++.|+.+++....+.|++++..
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKA 235 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHhc
Confidence 9999999999999999999999999887789999999999999999999999999999999999998887888877754
No 54
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-49 Score=389.77 Aligned_cols=220 Identities=31% Similarity=0.459 Sum_probs=198.9
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCc-----cEEEECCeeCCC--CCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG-----GRITVGGEDLRT--FDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~-----G~I~idG~di~~--i~~ 609 (782)
.++++|++|.|. ++.+|+|||++|++++.+|++|||||||||+++.+-|+.+..+ |+|.++|+||.+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 489999999996 4679999999999999999999999999999999999999876 999999999977 579
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCC----CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN----VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~----~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
-++|++||+|+|.|--|..||+|||+||..-.. .=||-++++++.|.++|-+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 999999999999999999999999999932111 224568899999999998753 344678899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
||||||||.-+|+||+|||||||||+.+..+|.+.|.++.++-|+|+|||.++.. +-+|+...+-.|++||.|.-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9999999999999999999999999999999999999999999999999999876 559999999999999999999887
Q ss_pred hc
Q 003981 765 AR 766 (782)
Q Consensus 765 ~~ 766 (782)
.+
T Consensus 237 ~~ 238 (253)
T COG1117 237 TN 238 (253)
T ss_pred cC
Confidence 54
No 55
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-49 Score=398.27 Aligned_cols=216 Identities=33% Similarity=0.524 Sum_probs=193.3
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+|+|||+.|. +..+++|+||+|++||++.++|||||||||++++|.|+++|++|+|+|||.|+++++.-+||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCC-cccHHHHHHcCCCCCCCC----HHHHHHHHHHhcch--hHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 618 IVNQEPVLF-SVSVGENIAYGLPDENVS----KDDIIKAAKAANAH--DFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 618 ~V~Q~~~LF-~gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~--dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
||-|..-|| +-||.|||++--.-...+ ++++.+-++..+++ +|..+.| ..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 999999999 589999998741111223 44566777777875 4666666 56999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhH-HHhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLST-VQNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLst-i~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|||..+|+|+++|||+||||+.|.+.+|+-+.++.+ ++|+|+|||.... ++-||||.||++|+|++.|+++|++++.
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999877653 8999999999975 6779999999999999999999999863
No 56
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-48 Score=407.86 Aligned_cols=233 Identities=56% Similarity=0.878 Sum_probs=217.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|++. +.++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.+.+...+|+.|+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999732 246999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA 697 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p 697 (782)
|++|++.+|+.|++|||.++.+ ..+.+++.++++..++.+++..+|.|+++.++.....||||||||++|||||+++|
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP--GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999854 24567788888889999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHH
Q 003981 698 PILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASL 773 (782)
Q Consensus 698 ~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L 773 (782)
++|||||||++||+.+++.+.+.|+++.+++|+|++||++..+..||+|++|++|++++.|+.+++....+.|+.+
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 158 PILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 9999999999999999999999999988899999999999999999999999999999999999999888877654
No 57
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-46 Score=391.23 Aligned_cols=522 Identities=20% Similarity=0.241 Sum_probs=371.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 166 LWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKV 245 (782)
Q Consensus 166 l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (782)
+..++|++++.++..+.+.+.+.+.+... +..+-+.+.......+.. +..++++.++..+.+.+.......++++.
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~l---La~in~al~e~~~~~~~~-l~~f~~llllf~~ss~is~lg~t~~gq~~ 79 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIGL---LAFINQALIETADTSLLV-LPEFLGLLLLFMVSSLISQLGLTTLGQHF 79 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcccceee-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888887777776665554433 222223333222221111 11122222233334455566778889999
Q ss_pred HHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003981 246 MSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVL 325 (782)
Q Consensus 246 ~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~ 325 (782)
..++|.++.+|++..|+..+++.+++.++.++++|+..+.-.+ ..++ ....+....+++++.+.+++|++.++++++
T Consensus 80 I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~-s~lp--~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 80 IYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLP--ELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehH-hhhH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887333 3333 255666678888999999999999888777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 326 VLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKR--QMLMFGRQVLAYQQSGIKLGTFKSLNE 403 (782)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (782)
+.+..+.-.+.+.+..+.+...++...++.+..+..+.|-+.++...--.+ ..+.+....+.+++.......+.....
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~ 236 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAV 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhhHHHHHHH
Confidence 766666666666777777888888888999999999999999998764332 223333333333332111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Q 003981 404 SLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALA 483 (782)
Q Consensus 404 ~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~ 483 (782)
.+.+++....+.+.+|+....-. -+.....++......+..|+.++...++.+-+|.+|.+||.++-..|+..+.
T Consensus 237 ~~~ni~l~~lIGlvf~lal~~~w---~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~-- 311 (546)
T COG4615 237 NWSNIMLLGLIGLVFWLALSLGW---ASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF-- 311 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC--
Confidence 22223222222233333322111 1222333344455667889999999999999999999999998654322111
Q ss_pred cccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEE
Q 003981 484 NGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTL 563 (782)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I 563 (782)
+. + ...+.++ .|+++||.|+|+. ..--+..||++|
T Consensus 312 ---------~~-------------------------------~--q~~p~~~-~lelrnvrfay~~--~~FhvgPiNl~i 346 (546)
T COG4615 312 ---------PR-------------------------------P--QAFPDWK-TLELRNVRFAYQD--NAFHVGPINLTI 346 (546)
T ss_pred ---------CC-------------------------------C--CcCCccc-ceeeeeeeeccCc--ccceecceeeEE
Confidence 00 0 0001132 5999999999984 335578899999
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV 643 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~ 643 (782)
++||.|-|+|.+||||||+++||.|+|.|++|+|++||.+++.-+++++|+-++-|+-|-|||+.+ +| |+..+
T Consensus 347 krGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~l------l~-~e~~a 419 (546)
T COG4615 347 KRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL------LG-PEGKA 419 (546)
T ss_pred ecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhh------hC-CccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999965 34 33347
Q ss_pred CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003981 644 SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNH 723 (782)
Q Consensus 644 s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~ 723 (782)
+.+.+.+-++.-.+..- .++-+|=-+ -.+||-|||.|+|+-=|++-+-|||+|||=-+-=||.=++.+-+.+--
T Consensus 420 s~q~i~~~LqrLel~~k-tsl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp 493 (546)
T COG4615 420 SPQLIEKWLQRLELAHK-TSLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLP 493 (546)
T ss_pred ChHHHHHHHHHHHHhhh-hcccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhH
Confidence 77777666554444332 223333222 257999999999999999999999999999999999999988887644
Q ss_pred hc--CCcEEEEEecChhHHHhcCeEEEEeCCEEEEe
Q 003981 724 LM--KGRTTLVIAHRLSTVQNAHQIALCSDGRIAEL 757 (782)
Q Consensus 724 l~--~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~ 757 (782)
.+ .|||++.|||.-.+...|||++.|++|+++|.
T Consensus 494 ~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 494 LLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 33 59999999999999999999999999999986
No 58
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-48 Score=405.40 Aligned_cols=228 Identities=50% Similarity=0.845 Sum_probs=213.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
+|+++|++|+|++ ..++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5899999999962 34699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 617 SIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 617 a~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
+|++|++.+|++|++||+.++.+ ...++++.++++..++.+++..+|.|+++.++.....||||||||++|||||+.+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRP--NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998854 2456788888999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccC
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKG 768 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g 768 (782)
|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||.+..+..||+|++|++|++++.|+.+++.++.|
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~~ 229 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhCC
Confidence 999999999999999999999999999877899999999999999999999999999999999999876543
No 59
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=3.6e-45 Score=412.98 Aligned_cols=501 Identities=17% Similarity=0.233 Sum_probs=373.4
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChh
Q 003981 192 LSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVG 271 (782)
Q Consensus 192 l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G 271 (782)
+......+.+.|.+...+...+|..+..+.++..+..++.....++...+..++...+...+.++.++.. .||.-...|
T Consensus 64 v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~ 142 (604)
T COG4178 64 VLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAG 142 (604)
T ss_pred eeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcc
Confidence 3334444566666655455556655555554444444555566777777788888889999999999888 444444444
Q ss_pred HH------HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHH---------------HHHHHHHHHHHH
Q 003981 272 EL------SGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQL---------------APILGVLVLTVS 330 (782)
Q Consensus 272 ~l------~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~L---------------ali~l~~~~~~~ 330 (782)
.+ =+|++.|+..+.+....... .++.++++++...++++..+..+ ...+++-+++..
T Consensus 143 ~~~~~dNpDQRi~eDi~~~t~~t~~l~~--g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s 220 (604)
T COG4178 143 GIGLIDNPDQRIQEDIRNFTETTLDLSF--GLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISAS 220 (604)
T ss_pred cccCCCChHHhHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHH
Confidence 22 37999998777665443322 23444555555555555333222 122222223333
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 331 VLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAI 410 (782)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (782)
++..++.|...+..-+..+..+.....+.-.-++.+.|-.|+.|+.+.++.++......+...+.......+..+.....
T Consensus 221 ~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~ 300 (604)
T COG4178 221 LLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYG 300 (604)
T ss_pred HHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Confidence 34456677777777777777778878888899999999999999999999888777777665555555544545555555
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---cchhhhcccc
Q 003981 411 YISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTE---IDDALANGLE 487 (782)
Q Consensus 411 ~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~---~~~~~~~~~~ 487 (782)
.++.++-+.+++-....|+++.|.++.....+.++...+..+.+.+..+.+-.+.+.|+.++.+.-+ .++.
T Consensus 301 ~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~------ 374 (604)
T COG4178 301 WLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTE------ 374 (604)
T ss_pred HHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCccc------
Confidence 5566655666777788999999999999999999999999999999999999999999999975321 0000
Q ss_pred cccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCc
Q 003981 488 RDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGS 567 (782)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge 567 (782)
.+. .. . . ........ ...|+|+|++..-|+ +...|++.||+|++|+
T Consensus 375 ----~~~-~~--------------~-~-----------~~~~~~~~-~~~i~~~nl~l~~p~--~~~ll~~l~~~v~~G~ 420 (604)
T COG4178 375 ----KPA-RT--------------G-R-----------RIDFDDNA-DHGITLENLSLRTPD--GQTLLSELNFEVRPGE 420 (604)
T ss_pred ----ccC-cc--------------c-c-----------cccccccc-cceeEEeeeeEECCC--CCeeeccceeeeCCCC
Confidence 000 00 0 0 00000001 457999999999984 3588999999999999
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHH
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDD 647 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~ee 647 (782)
.+-|.|+||||||||++.|+|+|+--+|+|-.-.. +.+-|+||.|++=.||+||=|+|-++.++.+|+|
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~ 489 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAE 489 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHHHHHhCCCCCCCCChHH
Confidence 99999999999999999999999999999876521 2389999999999999999999976554589999
Q ss_pred HHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Q 003981 648 IIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKG 727 (782)
Q Consensus 648 i~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~ 727 (782)
+.+++.+|++.+++.+|.+-.+ =..-||||||||||+||.++++|++++|||||||||.++|..+.+.+++.+.+
T Consensus 490 l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~ 564 (604)
T COG4178 490 LVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPD 564 (604)
T ss_pred HHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCC
Confidence 9999999999999999764333 45679999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecChhHHHhcCeEEEEeC
Q 003981 728 RTTLVIAHRLSTVQNAHQIALCSD 751 (782)
Q Consensus 728 kTvIvIaHRLsti~~aD~IiVLd~ 751 (782)
.|+|-|.||.....-.++.+-+++
T Consensus 565 ~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 565 ATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred CEEEEeccchhhHHHHhhheeecc
Confidence 999999999998888888766543
No 60
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-48 Score=402.30 Aligned_cols=220 Identities=35% Similarity=0.565 Sum_probs=207.7
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
|.|+++|++|+|+.. +.++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.++|.++.+++...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999742 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 616 VSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 616 Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
++|++|++.+|++|++|||.+.. ..+++++.++++..++.+++..+|.|++|.+++.+.+||||||||++|||||++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~ 156 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG---EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR 156 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC---CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998763 256788999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecC
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGT 759 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gt 759 (782)
+|+++||||||++||+.+++.+.+.|+++.+++|+|++||++..+..||+|++|++|++++.|+
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 157 KSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999999877899999999999999999999999999999876
No 61
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3e-48 Score=405.64 Aligned_cols=237 Identities=60% Similarity=0.923 Sum_probs=217.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|+++.|+...+.++|+|+||++++||.++|+|++|||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997432357999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA 697 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p 697 (782)
|++|++.+|+.|++|||.++.+. ...+++.+.++..++.+++..+|.|+++.+.....+||||||||++|||||+.+|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD--ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC--CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997542 4566777888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHH
Q 003981 698 PILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCT 776 (782)
Q Consensus 698 ~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~ 776 (782)
++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++....+.++.++..
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 237 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKA 237 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHhhc
Confidence 9999999999999999999999999887789999999999999999999999999999999999998877777766543
No 62
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-48 Score=418.76 Aligned_cols=221 Identities=29% Similarity=0.451 Sum_probs=187.6
Q ss_pred cEEEEeeEEEcCCCC--CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCC-------
Q 003981 537 DICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF------- 607 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~--~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i------- 607 (782)
-|+++||+|+|+... +.++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 589999999997321 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------ChHhhhhceEEEcccC--CCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCcc-ccccCC
Q 003981 608 ---------DKSEWARVVSIVNQEP--VLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYD-TLVGER 675 (782)
Q Consensus 608 ---------~~~~lR~~Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~Gld-T~VGE~ 675 (782)
+...+|+.|+||+|+| ++|++||+|||.|+......+.++..+.+ .+++..+ |++ ......
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLA-----KFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCC
Confidence 3567899999999998 79999999999987321123444432211 2334443 453 456778
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHH-HhcCeEEEEeCCE
Q 003981 676 GGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTV-QNAHQIALCSDGR 753 (782)
Q Consensus 676 G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti-~~aD~IiVLd~G~ 753 (782)
+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+ +.||+|+||++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999998774 589999999999987 5699999999999
Q ss_pred EEEecCHHHHH
Q 003981 754 IAELGTHFELL 764 (782)
Q Consensus 754 Ive~Gth~eLl 764 (782)
|++.|+|+++.
T Consensus 254 i~~~g~~~~~~ 264 (320)
T PRK13631 254 ILKTGTPYEIF 264 (320)
T ss_pred EEEeCCHHHHh
Confidence 99999999654
No 63
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.2e-47 Score=418.76 Aligned_cols=227 Identities=32% Similarity=0.457 Sum_probs=194.3
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh---hh
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---WA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~---lR 613 (782)
|+++||+++|+.+. ..++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 247999999999999999999999999999999999999999999999999999887655 57
Q ss_pred hceEEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
++|+||+|++.+|. .|++|||.++......+ ++++.++++..++.++..+. ...||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-----------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999995 79999999863211122 34566777777777665433 4689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||+.+|+|||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.++. ||+|++|++|+|+|.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998864 7899999999999965 99999999999999999999976
Q ss_pred cc--CchHHHHH
Q 003981 766 RK--GQYASLVC 775 (782)
Q Consensus 766 ~~--g~Y~~L~~ 775 (782)
.. ..+++++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 42 33444443
No 64
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4.2e-47 Score=392.24 Aligned_cols=219 Identities=40% Similarity=0.682 Sum_probs=203.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
+|+++|++++|+.+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999732 35799999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 617 SIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 617 a~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
+|++|++.+|..|++||+.++.+ ..+++++.++++..++.+.+..+|.|++|.+.+....||||||||++||||++.+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAP--LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCC--CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998743 2456778889999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEec
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELG 758 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~G 758 (782)
|++|||||||++||..+.+.+.+.|+++.+++|+|++||++..++.||+|++|++|++++.|
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999987678999999999999889999999999998765
No 65
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-47 Score=395.31 Aligned_cols=220 Identities=30% Similarity=0.500 Sum_probs=188.4
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh---Hhhhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK---SEWAR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~---~~lR~ 614 (782)
|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 46899999996 3469999999999999999999999999999999999999999999999999988764 56889
Q ss_pred ceEEEcccCCCCcc-cHHHHHHcCCC-CCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 615 VVSIVNQEPVLFSV-SVGENIAYGLP-DENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~g-TIreNI~~G~p-~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
.|+||+|++.+|.+ |++||+.++.. ....+. +++.++++..++.++.. .....||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-----------LYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence 99999999999986 99999988621 111232 33455566655554432 233579999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||+++|+||||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 7899999999998865 99999999999999999999986
Q ss_pred ccCchH
Q 003981 766 RKGQYA 771 (782)
Q Consensus 766 ~~g~Y~ 771 (782)
....|.
T Consensus 227 ~~~~~~ 232 (235)
T cd03261 227 SDDPLV 232 (235)
T ss_pred CCChhh
Confidence 655553
No 66
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-47 Score=406.15 Aligned_cols=214 Identities=35% Similarity=0.552 Sum_probs=192.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+.+|++. . +|+||||+|+.||+++|+|||||||||++++|+|+.+|++|+|.|||.++++++++. ++|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 48999999999732 2 899999999999999999999999999999999999999999999999999999875 889
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCC----CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDEN----VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~----~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
|+|+|+.-||+ .||+|||.|+..... --++++.++++..++.+.+.+.| ..||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 99999999996 699999999853222 23667889999999999988776 679999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||+++|++++||||+|+||+........-|+++.+ +.|+|.|||+.... .-||||+||++|+|.+.|++.|+..+
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 99999999999999999999999998888887653 67999999997665 55999999999999999999999866
No 67
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=7.9e-47 Score=392.10 Aligned_cols=214 Identities=34% Similarity=0.519 Sum_probs=187.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCC-----CCCccEEEECCeeCCCCC--hH
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY-----EPTGGRITVGGEDLRTFD--KS 610 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly-----~p~~G~I~idG~di~~i~--~~ 610 (782)
|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++.+++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999963 46999999999999999999999999999999999999 999999999999998877 66
Q ss_pred hhhhceEEEcccCCCCcccHHHHHHcCCCCCCC-----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~-----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
.+|++|+||+|++.+|+.|++||+.++...... .++++.++++..++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788999999999999999999999886321111 23456777777777665544322 5789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eL 763 (782)
|++|||||+++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++|+
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999999866689999999999876 4999999999999999998764
No 68
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-46 Score=388.74 Aligned_cols=217 Identities=32% Similarity=0.520 Sum_probs=198.2
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC-CCChHhhhhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR-TFDKSEWARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~-~i~~~~lR~~ 615 (782)
.|+++|++|+|+++ .++|+|+||+|++||.++|+|++|||||||+++|.|++.|++|+|.+||.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 38999999999854 68999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred eEEEcccC--CCCcccHHHHHHcCCCCCCCCHHH----HHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 003981 616 VSIVNQEP--VLFSVSVGENIAYGLPDENVSKDD----IIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 616 Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~ee----i~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
||||+|+| ++|..||.|.++||..+...+.+| +.+|++.+++.++...- -.+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHHh
Confidence 99999999 899999999999997665566655 66778888888774433 47899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|.+|..+|+|||||||||+||+...+.+.+.++++.+ ++|+|+|||++..+.. ||+++||++|+++.+|+++|+.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999875 4799999999999988 999999999999999999988765
No 69
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-46 Score=400.44 Aligned_cols=218 Identities=29% Similarity=0.476 Sum_probs=193.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.|+
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13650 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIG 84 (279)
T ss_pred EEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhce
Confidence 89999999997322246999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcccC--CCCcccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 618 IVNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 618 ~V~Q~~--~LF~gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
||+|+| .++..||+|||.|+......+ ++++.++++..++.++....| .+||||||||++|||
T Consensus 85 ~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lAr 153 (279)
T PRK13650 85 MVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIAG 153 (279)
T ss_pred EEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 467789999999874221223 345677888888877665444 689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||+.+|+||||||||++||+.+.+.+.+.|+++.+ |+|+|+|||++..+..||+|++|++|+|++.|+.+++.+.
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 154 AVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999999998853 8999999999999988999999999999999999988755
No 70
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.1e-46 Score=388.71 Aligned_cols=219 Identities=53% Similarity=0.813 Sum_probs=201.1
Q ss_pred CcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhh
Q 003981 534 WSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWA 613 (782)
Q Consensus 534 ~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR 613 (782)
..+.|+++|++++|+++.+.++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35679999999999743234699999999999999999999999999999999999999999999999999888888888
Q ss_pred hceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 614 RVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
+.++||+|++.+|++|++||+.++.. ..+.+++.+.++...+++++..+|.|+++.+.+...+||||||||++|||||
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQ--SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccC--CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999998743 2445666667777888999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEE
Q 003981 694 LKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRI 754 (782)
Q Consensus 694 lr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~I 754 (782)
+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|+|
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999998778999999999999999999999999975
No 71
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-46 Score=392.22 Aligned_cols=219 Identities=27% Similarity=0.431 Sum_probs=193.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC---CCccEEEECCeeCCCCChHhhhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE---PTGGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~---p~~G~I~idG~di~~i~~~~lR~ 614 (782)
|+++||++.|+ +.++|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|+|.+||+++.+.+...+|+
T Consensus 3 ~~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 3 AKTTNLNLFYG---KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred eeeeeeEEEEC---CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 78999999996 3479999999999999999999999999999999999985 69999999999999888888999
Q ss_pred ceEEEcccCCCCcccHHHHHHcCCCC------CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 615 VVSIVNQEPVLFSVSVGENIAYGLPD------ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~gTIreNI~~G~p~------~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
.|+|++|++.+|+.|++|||.++... ....++++.++++..++.+++.. ...+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHHH
Confidence 99999999999999999999876211 01123456677777777665543 345567899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|||||+++|+||||||||++||..+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++|+...
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999999878999999999999875 5999999999999999999999764
No 72
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.2e-46 Score=357.18 Aligned_cols=213 Identities=38% Similarity=0.592 Sum_probs=188.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|.+++|.|+|..- + -.++++|++||+|||+||||||||||+||++||..|.+|+|.|+|+|...-++. ++-++
T Consensus 2 l~L~~V~~~y~~~---~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL---P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcc---e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 5678999999632 2 468999999999999999999999999999999999999999999998887764 46799
Q ss_pred EEcccCCCCc-ccHHHHHHcCCC-C---CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLP-D---ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p-~---~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
+++||.-||. =||++||.+|.. . .....+++..|+..+++.+|..+|| ..||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 9999999995 799999999952 1 1234678999999999999999999 4699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhccC
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARKG 768 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~g 768 (782)
|+|+-|||+||||+||||+.-.+....-+.++. ++.|+++|||.++.++. +|+++++++|||+++|.-+++.+..+
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 999999999999999999988877777766654 57899999999998755 99999999999999999999987654
No 73
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.7e-46 Score=385.81 Aligned_cols=215 Identities=32% Similarity=0.512 Sum_probs=193.8
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
++++|++|+|+ ++++|+|+||+|++||.++|+||+|||||||+|+|+|+.+|.+|+|++||+++.+++.+++.+++|
T Consensus 3 L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 3 LEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 78999999996 458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccC-CCCcccHHHHHHcCCC-C-------CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 618 IVNQEP-VLFSVSVGENIAYGLP-D-------ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 618 ~V~Q~~-~LF~gTIreNI~~G~p-~-------~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
||||++ .-|.-||+|=+.+|+- . .+.+++.+.+|++..++.++..+ .-..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHH
Confidence 999996 5688999999999952 1 11233468899999999998543 23459999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhH-HHhcCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLST-VQNAHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLst-i~~aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||.++|+||+||||||+||...+-.|.+.++++. +|+|+|+|.|.++. .+.||++++|++|+|+.+|+++|.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999886 37999999999975 57899999999999999999998875
Q ss_pred c
Q 003981 766 R 766 (782)
Q Consensus 766 ~ 766 (782)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 4
No 74
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-46 Score=402.81 Aligned_cols=215 Identities=33% Similarity=0.554 Sum_probs=193.4
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+|+||+.+|. +..+++||||+|++||+++++|||||||||++++|+||.+|++|+|.+||+|+.+++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 599999999996 56899999999999999999999999999999999999999999999999999998875 6889
Q ss_pred EEEcccCCCC-cccHHHHHHcCCC-CCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 617 SIVNQEPVLF-SVSVGENIAYGLP-DENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 617 a~V~Q~~~LF-~gTIreNI~~G~p-~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
++|+|+--|| +-||+|||.||.. ..... ++++.++++.+++.++-.+.| ..|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 9999999999 5899999999954 11122 247889999999999876655 67999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChh-HHHhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLS-TVQNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLs-ti~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|||..+|++|+||||.||||..-....+.-|+++. .|.|.|+|||.-. .+.-+|||.||++|+|.+.||++|+..+.
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999888887764 3889999999965 56779999999999999999999998763
No 75
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-46 Score=407.06 Aligned_cols=215 Identities=29% Similarity=0.495 Sum_probs=190.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|++ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.++++. ++.|+
T Consensus 4 l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 4 LKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 899999999942 35799999999999999999999999999999999999999999999999999887764 47899
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|. .||+|||.|+......+ .+++.++++..++.++..+.| ..||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999995 69999999974311122 345678888888888776655 4899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|+++|+|||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||.+..+ ..||+|++|++|+|++.|+.+|+.++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999999988754 78999999999876 459999999999999999999998753
No 76
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-46 Score=377.94 Aligned_cols=200 Identities=34% Similarity=0.498 Sum_probs=177.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.+++++|+.+|+. ..||+||||+|++||+|+||||||||||||+++|+|+.+|++|+|.++|.++....+ .+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~-----~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGP-----DI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCC-----CE
Confidence 3889999999973 689999999999999999999999999999999999999999999999998855544 49
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCC----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
+||+|++.||. -||+||+.+|...... ..+.+.++++.+++.+|-...| ..||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999998 7999999998542111 2456888999999999987777 579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhH-HHhcCeEEEEeC--CEEE
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLST-VQNAHQIALCSD--GRIA 755 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLst-i~~aD~IiVLd~--G~Iv 755 (782)
||+.+|+||+||||+||||+.|....++-|.++.+ ++|+++|||.++. +.-+|||+||.+ |+|.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999999999999988764 6999999999976 566999999999 5553
No 77
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=385.80 Aligned_cols=224 Identities=29% Similarity=0.503 Sum_probs=192.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++...+|+.+
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSF---GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 489999999996 34699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcch-hHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 617 SIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAH-DFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 617 a~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~-dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
+|++|++.+|+.|++||+.++.......++++.+.++..++. ++ .......||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY-----------ATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH-----------hhCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999986321112234555666555553 22 234567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhccC-chH
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARKG-QYA 771 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~g-~Y~ 771 (782)
+|++|||||||++||..+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++.|+.+++..... .|.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 9999999999999999999999999998753 8999999999999865 99999999999999999999986532 354
Q ss_pred HHH
Q 003981 772 SLV 774 (782)
Q Consensus 772 ~L~ 774 (782)
+.+
T Consensus 229 ~~~ 231 (241)
T PRK14250 229 KLF 231 (241)
T ss_pred HHH
Confidence 443
No 78
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=393.91 Aligned_cols=215 Identities=32% Similarity=0.480 Sum_probs=190.2
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++||+|+|+. +.++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+++.|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 3899999999962 34699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcccC--CCCcccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 617 SIVNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 617 a~V~Q~~--~LF~gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
+||+|+| .+|..|++|||.|+......+ ++++.++++..++.++..+.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 689999999999873211122 345677788888877665555 37999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHH
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|+|++.|+.+++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999998875 489999999999998 459999999999999999987653
No 79
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=405.30 Aligned_cols=218 Identities=33% Similarity=0.501 Sum_probs=187.4
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh---hh
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---WA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~---lR 613 (782)
|+++||+|+|+.+. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997211 357999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hceEEEcccCCCCc-ccHHHHHHcCCCCCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
++|+||+|++.+|. .|++|||.++......+. +++.++++..++.++.. .....||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 89999999999986 799999998632112232 34455555555544433 344689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||+.+|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999986
Q ss_pred c
Q 003981 766 R 766 (782)
Q Consensus 766 ~ 766 (782)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
No 80
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-45 Score=376.59 Aligned_cols=203 Identities=34% Similarity=0.529 Sum_probs=184.6
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
+.|+++|++++|+.. +.++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 569999999999742 3479999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 616 VSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 616 Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
|+||+|++.+|++|++|||.+.. ..+++++.++++ +......|||||+||++||||++.
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~---~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFD---EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred EEEEecCCcccCccHHHHhcccC---CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999998763 245566655553 345778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCH
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTH 760 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth 760 (782)
+|+|+||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+..||+|++|++|+|++.|++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999998778999999999999988999999999999998863
No 81
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=404.97 Aligned_cols=215 Identities=32% Similarity=0.516 Sum_probs=189.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .+++|
T Consensus 6 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 499999999996 3568999999999999999999999999999999999999999999999999987764 46789
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
+||+|++.||. .|++|||.|+......+ ++++.++++..++.++..+. ...||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 99999999996 59999999974211122 35677788888887665444 3579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
||+++|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||.++.+ .-||+|+||++|+|++.|+++|+.++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999998864 79999999999987 459999999999999999999998653
No 82
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=389.83 Aligned_cols=220 Identities=29% Similarity=0.436 Sum_probs=189.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--CCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--FDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~--i~~ 609 (782)
-|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999962 4699999999999999999999999999999999999997 49999999999853 345
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCC-----CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-----VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~-----~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
..+|+.|+||+|++.+|+.|++|||.++..... ..++++.++++.+++.+.+ ++.+++ ...+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 678899999999999999999999998631111 1134566677776664433 334454 5678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999755 999999999999999999999
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
.+.
T Consensus 237 ~~~ 239 (254)
T PRK14273 237 FFN 239 (254)
T ss_pred HhC
Confidence 764
No 83
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-45 Score=386.25 Aligned_cols=215 Identities=33% Similarity=0.481 Sum_probs=184.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC---hHhhhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD---KSEWAR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~---~~~lR~ 614 (782)
++++||+++|++ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999963 257999999999999999999999999999999999999999999999999998877 456888
Q ss_pred ceEEEcccCCCCc-ccHHHHHHcCCCC------------CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCCh
Q 003981 615 VVSIVNQEPVLFS-VSVGENIAYGLPD------------ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSG 681 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~-gTIreNI~~G~p~------------~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSG 681 (782)
.++||+|++.+|. .|++||+.++... +...++++.++++..++.+ ........|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccCCH
Confidence 9999999999887 6999999875321 0111234445555544433 33456778999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEec
Q 003981 682 GQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELG 758 (782)
Q Consensus 682 GQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~G 758 (782)
|||||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3899999999999997 59999999999999999
Q ss_pred CHHHHHh
Q 003981 759 THFELLA 765 (782)
Q Consensus 759 th~eLl~ 765 (782)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9998743
No 84
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-45 Score=392.69 Aligned_cols=217 Identities=35% Similarity=0.523 Sum_probs=193.3
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+|+|+.. .+++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|++||+++...+...+++.|+
T Consensus 6 l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 8999999999632 356999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcccC--CCCcccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 618 IVNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 618 ~V~Q~~--~LF~gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
||+|++ .+++.||+|||.++......+ ++++.++++..++.+++...| ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 567889999999863211122 245677787788877766655 489999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+..||+|++|++|++++.|+.+++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998864 7899999999999999999999999999999999988764
No 85
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.3e-45 Score=387.93 Aligned_cols=219 Identities=32% Similarity=0.469 Sum_probs=189.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----ccEEEECCeeCCCC--ChH
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT-----GGRITVGGEDLRTF--DKS 610 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~-----~G~I~idG~di~~i--~~~ 610 (782)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|++||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 46999999999999999999999999999999999999998 99999999998763 456
Q ss_pred hhhhceEEEcccCCCCcccHHHHHHcCCCCCC-CC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-VS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~-~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
.+|+.|+||+|++.+|..|++||+.++..... .+ ++++.++++..++.+++. .........|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 77899999999999999999999987531111 11 245666777777764442 1234556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
|++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||++..+. .||+|++|++|+|++.|+++|+.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999877799999999999875 49999999999999999999997
Q ss_pred hc
Q 003981 765 AR 766 (782)
Q Consensus 765 ~~ 766 (782)
..
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 54
No 86
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-45 Score=392.30 Aligned_cols=220 Identities=28% Similarity=0.485 Sum_probs=192.4
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++||+|+|+.....++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999743234699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccC--CCCcccHHHHHHcCCCCCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 617 SIVNQEP--VLFSVSVGENIAYGLPDENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 617 a~V~Q~~--~LF~gTIreNI~~G~p~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
+||+|++ .+++.|+.|||.++......+++ ++.++++.+++.++... ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 47789999999976321123333 35667777777665443 3468999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+..||+|++|++|++++.|+++++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999999999999999999999999999999998864 79999999999999899999999999999999999987654
No 87
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.3e-45 Score=371.91 Aligned_cols=209 Identities=32% Similarity=0.491 Sum_probs=176.1
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh---h-
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---W- 612 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~---l- 612 (782)
++++||+..|..+. ...+|++|||+|++||+|||+||||||||||+++|.|+-.|++|.|.++|+|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999997432 247999999999999999999999999999999999999999999999999999998543 3
Q ss_pred hhceEEEcccCCCCc-ccHHHHHHc----CCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 613 ARVVSIVNQEPVLFS-VSVGENIAY----GLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 613 R~~Ia~V~Q~~~LF~-gTIreNI~~----G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
|++||||+|+..|++ -|++|||.+ .........+.+.+.++..++.+... ...-..||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 567999999999885 699999985 21100012344555666666655433 123467999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHhcCeEEEEeCCEEEE
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQNAHQIALCSDGRIAE 756 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive 756 (782)
||||||+.+|+|++.||||+|||++|.+.|.+.++++. .|+|+|+|||.......|||++.|++|++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999884 3789999999999999999999999999654
No 88
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.2e-45 Score=385.46 Aligned_cols=219 Identities=26% Similarity=0.455 Sum_probs=185.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh-hhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~I 616 (782)
++++||+|+|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 46899999996 3469999999999999999999999999999999999999999999999999988887664 5679
Q ss_pred EEEcccCCCCcc-cHHHHHHcCCCCCCC----------CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 617 SIVNQEPVLFSV-SVGENIAYGLPDENV----------SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 617 a~V~Q~~~LF~g-TIreNI~~G~p~~~~----------s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
+||+|++.+|.+ |++|||.++...... ..++.. ..++++++.+ |++.........|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR-----ERAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH-----HHHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999986 999999986321100 111111 1123333333 4555556667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999998876 68999999999999866 999999999999999999998
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
...
T Consensus 231 ~~~ 233 (236)
T cd03219 231 RNN 233 (236)
T ss_pred ccC
Confidence 653
No 89
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=370.59 Aligned_cols=229 Identities=34% Similarity=0.497 Sum_probs=190.1
Q ss_pred cEEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCC-ChHhhhh
Q 003981 537 DICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF-DKSEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i-~~~~lR~ 614 (782)
.++++|+++.|+.+. -.++|+||||+|.+||++||||+||||||||+++|+|+.+|++|+|++||.++... .....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 388999999997431 11599999999999999999999999999999999999999999999999766543 2346788
Q ss_pred ceEEEcccCCC-Cc--ccHHHHHHcCC-C-CCCCCHHHHHHHHHHhcchh-HHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 615 VVSIVNQEPVL-FS--VSVGENIAYGL-P-DENVSKDDIIKAAKAANAHD-FIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 615 ~Ia~V~Q~~~L-F~--gTIreNI~~G~-p-~~~~s~eei~~A~~~a~l~d-fI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
.|-+|+|||+- +| -||++-|.=.. + .-+-..+++.++++.+++.+ |..+.| ..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 99999999983 33 57777664210 0 00123566889999988874 444444 679999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCc--EEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGR--TTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~k--TvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||.-+|++|||||||||||+-.++.|.+-+.++.+++ |.|+|||.++.+.+ ||||+||++|+|||.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999998887655 99999999999977 99999999999999999999987
Q ss_pred c-cCchHHHHHH
Q 003981 766 R-KGQYASLVCT 776 (782)
Q Consensus 766 ~-~g~Y~~L~~~ 776 (782)
. .-.|.+....
T Consensus 232 ~~~h~ytr~Ll~ 243 (252)
T COG1124 232 HPSHPYTRELLE 243 (252)
T ss_pred CCccHHHHHHHH
Confidence 7 4456655433
No 90
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.2e-45 Score=405.16 Aligned_cols=204 Identities=31% Similarity=0.479 Sum_probs=181.7
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh----hhceEEEcccCCCCc
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW----ARVVSIVNQEPVLFS 627 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l----R~~Ia~V~Q~~~LF~ 627 (782)
+..+|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++||+++..++..++ |++|+||+|++.||+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 3568999999999999999999999999999999999999999999999999999999888 789999999999997
Q ss_pred -ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 003981 628 -VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILIL 702 (782)
Q Consensus 628 -gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILIL 702 (782)
.||+|||.|+.+....+ ++++.++++.+++.+++.+.| .+||||||||++|||||+++|+||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 59999999874321122 355677787777766655444 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 703 DEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 703 DEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|||||+||+.+.+.+++.+.++. .++|+|+|||++..+ +.||+|++|++|+|++.|+++|++++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 99999999999999999998874 389999999999975 66999999999999999999999875
No 91
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-45 Score=392.75 Aligned_cols=219 Identities=29% Similarity=0.472 Sum_probs=186.7
Q ss_pred EEEEeeEEEcCCCC--CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC--hHhhh
Q 003981 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD--KSEWA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~--~~~lR 613 (782)
|+++||+|+|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997321 247999999999999999999999999999999999999999999999999998754 45788
Q ss_pred hceEEEcccC--CCCcccHHHHHHcCCCCCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 614 RVVSIVNQEP--VLFSVSVGENIAYGLPDENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 614 ~~Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
++|+||+|+| .+|+.|++|||.++......+.+ ++.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 68899999999986321123443 345555555553 11233455678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHH
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
+|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|++++.|+.+++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 789999999999884 59999999999999999999986
Q ss_pred h
Q 003981 765 A 765 (782)
Q Consensus 765 ~ 765 (782)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
No 92
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=9.6e-46 Score=381.07 Aligned_cols=205 Identities=33% Similarity=0.493 Sum_probs=177.8
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChH---hhhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWAR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~---~lR~ 614 (782)
|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 24699999999999999999999999999999999999999999999999999877643 4788
Q ss_pred ceEEEcccCCCCc-ccHHHHHHcCCCC----CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 003981 615 VVSIVNQEPVLFS-VSVGENIAYGLPD----ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~-gTIreNI~~G~p~----~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
.++||+|++.+|. .|++||+.++... ....++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999987 5999999875211 1112456777888888776655444 4799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEE
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRI 754 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~I 754 (782)
||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 47899999999999875 999999999985
No 93
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-45 Score=387.07 Aligned_cols=220 Identities=30% Similarity=0.475 Sum_probs=190.8
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~~--i~~ 609 (782)
.|+++||+|+|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 6 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEEC---CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 499999999996 2469999999999999999999999999999999999975 689999999999865 345
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCC-----CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-----VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~-----~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
..+|+.|+||+|++.+|+.|++|||.++..... ..++++.++++.+++.+++. +.......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 678899999999999999999999998621101 12345667777777765443 234566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|++||++..+. .||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877899999999999985 5999999999999999999999
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 754
No 94
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-45 Score=393.71 Aligned_cols=218 Identities=29% Similarity=0.446 Sum_probs=185.4
Q ss_pred EEEEeeEEEcCCCC--CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC----CChHh
Q 003981 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT----FDKSE 611 (782)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~----i~~~~ 611 (782)
|+++||+|+|+... .+++|+||||+|++||++||+|++|||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997321 1369999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhhceEEEcccC--CCCcccHHHHHHcCCCCCCCCHHH----HHHHHHHhcch-hHHHhCCCCccccccCCCCCCChhHH
Q 003981 612 WARVVSIVNQEP--VLFSVSVGENIAYGLPDENVSKDD----IIKAAKAANAH-DFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 612 lR~~Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~ee----i~~A~~~a~l~-dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
+|+.|+||+|+| .+|+.|+.|||.|+..+...+.++ +.++++..++. ++ .......||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF-----------WEKSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh-----------ccCCcccCCHHHH
Confidence 899999999998 799999999999874221233333 44455555553 22 2345578999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~e 762 (782)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|+|++.|+++|
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998875 4899999999999884 599999999999999999999
Q ss_pred HHhc
Q 003981 763 LLAR 766 (782)
Q Consensus 763 Ll~~ 766 (782)
+..+
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8653
No 95
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-45 Score=393.20 Aligned_cols=222 Identities=27% Similarity=0.463 Sum_probs=187.2
Q ss_pred EEEEeeEEEcCCCC--CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCC----ChHh
Q 003981 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF----DKSE 611 (782)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i----~~~~ 611 (782)
|+++||+|+|+.+. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999997321 24699999999999999999999999999999999999999999999999999764 3457
Q ss_pred hhhceEEEcccC--CCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccc-cccCCCCCCChhHHHHHH
Q 003981 612 WARVVSIVNQEP--VLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDT-LVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 612 lR~~Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT-~VGE~G~~LSGGQrQRIa 688 (782)
+|+.|+||+|+| .+|..|++|||.++......+.++..+.+ .+.+..+ |+++ .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYA-----HRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999997 68999999999987321123444433221 2233332 5553 334667899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999875 4899999999999875 699999999999999999999876
Q ss_pred c
Q 003981 766 R 766 (782)
Q Consensus 766 ~ 766 (782)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 5
No 96
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-45 Score=382.18 Aligned_cols=217 Identities=31% Similarity=0.457 Sum_probs=185.4
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChH---hhh
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~---~lR 613 (782)
|+++|++++|++.. ..++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||+++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997321 12799999999999999999999999999999999999999999999999999887654 347
Q ss_pred hceEEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
+.|+||+|++.+|. .|++|||.++......+ .+++.++++..++.++.. ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 89999999999997 69999998753211122 334556666666655443 344689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999865 99999999999999999998865
No 97
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-45 Score=383.55 Aligned_cols=213 Identities=32% Similarity=0.466 Sum_probs=182.4
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+|+|++ .++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++...+. .++.|+
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 479999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCCCCC----C----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPDENV----S----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~~~~----s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
||+|++.+|. .|++|||.++...... + ++++.++++..++.++. .....+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHH
Confidence 9999999996 6999999986321111 1 23344555555554433 3345689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999998754 99999999999999999999976
Q ss_pred c
Q 003981 766 R 766 (782)
Q Consensus 766 ~ 766 (782)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
No 98
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.5e-45 Score=381.28 Aligned_cols=219 Identities=29% Similarity=0.497 Sum_probs=185.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 68999999996 347999999999999999999999999999999999999999999999999998776644 45899
Q ss_pred EEcccCCC-CcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 618 IVNQEPVL-FSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 618 ~V~Q~~~L-F~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
|++|++.+ +..|++||+.++......+.++..+ .+.+++..+ |++.........||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999988 5789999998763211122222211 122333333 455555666778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGAL 223 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHc
Confidence 99999999999999999999999999875 489999999999999889999999999999999999998763
No 99
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-45 Score=387.34 Aligned_cols=222 Identities=30% Similarity=0.477 Sum_probs=192.5
Q ss_pred cccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--C
Q 003981 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--F 607 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~~--i 607 (782)
.+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 457999999999963 469999999999999999999999999999999999986 589999999999853 4
Q ss_pred ChHhhhhceEEEcccCCCCcccHHHHHHcCCCC-CCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChh
Q 003981 608 DKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD-ENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGG 682 (782)
Q Consensus 608 ~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~-~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGG 682 (782)
+...+|++|+||+|++.+|..|++||+.++... ...+ ++++.++++.+++.+.+ ...+.+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHH
Confidence 566789999999999999999999999986321 0122 24566777777665433 23456677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHH
Q 003981 683 QRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 683 QrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~ 761 (782)
||||++|||||+++|+||||||||++||..+++.+.+.|+++.+++|+|+|||++..+. .||+|++|++|+|++.|+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877889999999999885 59999999999999999999
Q ss_pred HHHhc
Q 003981 762 ELLAR 766 (782)
Q Consensus 762 eLl~~ 766 (782)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 99764
No 100
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.4e-44 Score=385.55 Aligned_cols=219 Identities=27% Similarity=0.483 Sum_probs=197.8
Q ss_pred cccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhh
Q 003981 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~ 614 (782)
.+.|+++|+++.. .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.
T Consensus 37 ~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~------------ 99 (282)
T cd03291 37 DNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ 99 (282)
T ss_pred CCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE------------
Confidence 3469999999952 35999999999999999999999999999999999999999999999994
Q ss_pred ceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
|+||+|++++|++|++|||.++.. ..+.++.++++.+++.+++..+|++++|.+++.+..||||||||++|||||+
T Consensus 100 -i~yv~q~~~l~~~tv~enl~~~~~---~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~ 175 (282)
T cd03291 100 -ISFSSQFSWIMPGTIKENIIFGVS---YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY 175 (282)
T ss_pred -EEEEeCcccccccCHHHHhhcccc---cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998732 2345667778888999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHH
Q 003981 695 KNAPILILDEATSALDAVSERLVQDA-LNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASL 773 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~-L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L 773 (782)
++|+||||||||++||+.+...+.+. ++.+.+++|+|+|||++..+..||+|++|++|+|++.|+++++.+....|.+.
T Consensus 176 ~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 255 (282)
T cd03291 176 KDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSK 255 (282)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHHHH
Confidence 99999999999999999999988875 45666789999999999999999999999999999999999998765566554
Q ss_pred H
Q 003981 774 V 774 (782)
Q Consensus 774 ~ 774 (782)
+
T Consensus 256 ~ 256 (282)
T cd03291 256 L 256 (282)
T ss_pred H
Confidence 4
No 101
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.6e-45 Score=378.87 Aligned_cols=213 Identities=26% Similarity=0.445 Sum_probs=181.9
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||++.|+.. ..++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 4789999999732 25799999999999999999999999999999999999999999999999998764 367788999
Q ss_pred EEcccCCCC-cccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLF-SVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF-~gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+| +.|++||+.++......+ ++++.++++..++.+. .++ ....||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~----~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-------ANK----RARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-------HhC----hhhhCCHHHHHHHHHHHH
Confidence 999999999 689999998752111112 2345555555555433 233 345799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.. ||+|++|++|+|++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999998878999999999999865 999999999999999999875
No 102
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.7e-45 Score=402.78 Aligned_cols=215 Identities=30% Similarity=0.498 Sum_probs=188.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFG---AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 389999999996 34689999999999999999999999999999999999999999999999999887764 6789
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
+||+|++.||. .|++|||.|+......+ ++++.++++..++.++.. .....||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHH
Confidence 99999999995 79999999974321222 345666777666666544 344689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
||+++|++|+||||||+||..+.+.+.+.|+++.+ +.|+|+|||+++.+ .-||+|+||++|+|++.|+++|+.++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999988754 78999999999986 459999999999999999999998753
No 103
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.8e-45 Score=384.33 Aligned_cols=214 Identities=30% Similarity=0.449 Sum_probs=182.7
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh---Hhhhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK---SEWAR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~---~~lR~ 614 (782)
|+++||+++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999961 3469999999999999999999999999999999999999999999999999987764 34688
Q ss_pred ceEEEcccCCCCc-ccHHHHHHcCCCCC------------CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCCh
Q 003981 615 VVSIVNQEPVLFS-VSVGENIAYGLPDE------------NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSG 681 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~-gTIreNI~~G~p~~------------~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSG 681 (782)
.++||+|++.+|. .|++||+.++.... ...++++.++++..++.+ ........|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCH
Confidence 9999999999986 69999998763210 011234445555544443 33456678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEec
Q 003981 682 GQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELG 758 (782)
Q Consensus 682 GQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~G 758 (782)
|||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 789999999999985 59999999999999999
Q ss_pred CHHHHH
Q 003981 759 THFELL 764 (782)
Q Consensus 759 th~eLl 764 (782)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999874
No 104
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.1e-45 Score=373.09 Aligned_cols=200 Identities=34% Similarity=0.543 Sum_probs=182.3
Q ss_pred EEEEeeEEEcCCCCC--ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 538 ICLEDVYFSYPLRPD--VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~--~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
|+++||+++|++..+ +++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|++|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999974211 3699999999999999999999999999999999999999999999999 4
Q ss_pred eEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 616 VSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 616 Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
|+||+|+|.+|++|++|||.++.. .+++++.++++.+++.+++..+|.|++|.+.+++..||||||||++||||++.
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~ 144 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP---FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS 144 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC---cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999732 45667888899999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCcEEEEEecChhHHHhcCeEEEEeCCE
Q 003981 696 NAPILILDEATSALDAVSERLVQD-ALNHLM-KGRTTLVIAHRLSTVQNAHQIALCSDGR 753 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~-~L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~G~ 753 (782)
+|+|+||||||++||+.+.+.+.+ .++++. +++|+|++||++..+..||+|++|++|+
T Consensus 145 ~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 145 DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999999888877 456553 4689999999999999999999999985
No 105
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-45 Score=387.63 Aligned_cols=222 Identities=29% Similarity=0.446 Sum_probs=192.1
Q ss_pred cccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--C
Q 003981 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--F 607 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~--i 607 (782)
.+.|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|++||+++.. .
T Consensus 17 ~~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEEC---CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 35799999999996 34799999999999999999999999999999999999985 89999999999875 4
Q ss_pred ChHhhhhceEEEcccCCCCcccHHHHHHcCCCC-----CCC-CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCCh
Q 003981 608 DKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD-----ENV-SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSG 681 (782)
Q Consensus 608 ~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~-----~~~-s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSG 681 (782)
+...+|+.|+||+|++.+|+.|++|||.++... +.. .++++.++++..++.+++. +........|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 566789999999999999999999999875210 001 1345677777777765442 234556788999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCH
Q 003981 682 GQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTH 760 (782)
Q Consensus 682 GQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth 760 (782)
|||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999999877889999999999985 4899999999999999999
Q ss_pred HHHHhc
Q 003981 761 FELLAR 766 (782)
Q Consensus 761 ~eLl~~ 766 (782)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 999754
No 106
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.4e-45 Score=375.06 Aligned_cols=201 Identities=32% Similarity=0.513 Sum_probs=176.7
Q ss_pred EEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEE
Q 003981 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (782)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 618 (782)
+++||+++|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+|++|+|
T Consensus 1 ~~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 36899999963 1579999999999999999999999999999999999999999999999998854 457788999
Q ss_pred EcccC--CCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 619 VNQEP--VLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 619 V~Q~~--~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
++|++ .+|+.|++||+.++.+.....++++.++++..++.++..+.| ..||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 478899999999874322223457888888888877755544 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhHHHh-cCeEEEEeCCEEE
Q 003981 697 APILILDEATSALDAVSERLVQDALNHL-MKGRTTLVIAHRLSTVQN-AHQIALCSDGRIA 755 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l-~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Iv 755 (782)
|++|||||||++||+.+.+.+.+.|+++ .+++|+|++||+++.+.. ||+|++|++|+||
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 457899999999999875 9999999999985
No 107
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.8e-45 Score=364.87 Aligned_cols=225 Identities=32% Similarity=0.506 Sum_probs=193.9
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChH---hhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWA 613 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~---~lR 613 (782)
-|++++|+|+|. +..|++||||+|++||.++|+|+||||||||+++|.|+..|++|+|.++|.|+.+++.+ .+|
T Consensus 8 ~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 499999999996 45899999999999999999999999999999999999999999999999999999864 568
Q ss_pred hceEEEcccCCCCcc-cHHHHHHcCC-CCCCCCHHHHH----HHHHHhcchhH-HHhCCCCccccccCCCCCCChhHHHH
Q 003981 614 RVVSIVNQEPVLFSV-SVGENIAYGL-PDENVSKDDII----KAAKAANAHDF-IISLPQGYDTLVGERGGLLSGGQRQR 686 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~g-TIreNI~~G~-p~~~~s~eei~----~A~~~a~l~df-I~~LP~GldT~VGE~G~~LSGGQrQR 686 (782)
+++|+++|+.-||+. ||+||+.|-. .....+++++. .-++.+++... ...+| +.||||.|.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 999999999999974 9999999832 11234444443 34556666655 33444 6799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 687 IaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
.|||||+.-||+|+++|||||+||+.+...+.+-|+++.+ +.|+|+|||.++++.. ||+|+++.+|+|+..||.+||
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999887754 8899999999998866 799999999999999999999
Q ss_pred HhccCc-hHHHHH
Q 003981 764 LARKGQ-YASLVC 775 (782)
Q Consensus 764 l~~~g~-Y~~L~~ 775 (782)
.+.+.. -+++++
T Consensus 234 ~~sd~P~v~qf~~ 246 (263)
T COG1127 234 LASDDPWVRQFFN 246 (263)
T ss_pred HhCCCHHHHHHhc
Confidence 987544 455444
No 108
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-45 Score=387.77 Aligned_cols=218 Identities=31% Similarity=0.508 Sum_probs=189.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++|++++|+++ +.++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++...+...+|+.|
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 45799999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccC--CCCcccHHHHHHcCCCCCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 617 SIVNQEP--VLFSVSVGENIAYGLPDENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 617 a~V~Q~~--~LF~gTIreNI~~G~p~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
+||+|++ .+++.|++|||.++......+.+ ++.++++..++.++..+ ...+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 45678999999986321112333 34556666666655443 4469999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 4899999999999989999999999999999999888754
No 109
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-45 Score=390.11 Aligned_cols=217 Identities=29% Similarity=0.471 Sum_probs=188.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC--CCChHhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR--TFDKSEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~--~i~~~~lR~ 614 (782)
-|+++||+|+|+. +.++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 3899999999962 357999999999999999999999999999999999999999999999999984 345667899
Q ss_pred ceEEEcccC--CCCcccHHHHHHcCCCCCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 615 VVSIVNQEP--VLFSVSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 615 ~Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
.|+||+|++ .+|+.|++|||.++......+. +++.++++..++.++ ......+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHHH
Confidence 999999998 6789999999998532112232 345566666666543 23457789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988764 799999999999986 599999999999999999999876
Q ss_pred c
Q 003981 766 R 766 (782)
Q Consensus 766 ~ 766 (782)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 110
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-45 Score=377.89 Aligned_cols=205 Identities=34% Similarity=0.530 Sum_probs=175.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. +++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999963 479999999999999999999999999999999999999999999999999976543 577899
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|. .|++||+.++......+ ++++.++++..++.++... ...+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNR-----------YPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999886 69999998763211112 2345566666666554433 346799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEec
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELG 758 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~G 758 (782)
|+++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999875 38899999999998755 9999999999999876
No 111
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.9e-45 Score=377.99 Aligned_cols=217 Identities=28% Similarity=0.413 Sum_probs=180.8
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh-hhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~I 616 (782)
|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.... |++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecC---CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 47899999996 3479999999999999999999999999999999999999999999999999988877654 6789
Q ss_pred EEEcccCCCCcc-cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 617 SIVNQEPVLFSV-SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 617 a~V~Q~~~LF~g-TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
+||+|++.+|.+ |++||+.++.+. ...++..+.+ ..+.+.+..++ .........||||||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~--~~~~~~~~~~--~~~l~~~~~l~----~~~~~~~~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYA--RRRAKRKARL--ERVYELFPRLK----ERRKQLAGTLSGGEQQMLAIARALMS 149 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhh--cCchhHHHHH--HHHHHHHHhhh----hhhhCchhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 999999987432 1111111111 11112221223 33345567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHh
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.+ ||+|++|++|+|++.|+.+++..
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 999999999999999999999999998875 57899999999998755 99999999999999999988753
No 112
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-45 Score=384.89 Aligned_cols=221 Identities=28% Similarity=0.402 Sum_probs=189.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----ccEEEECCeeCC--CCCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT-----GGRITVGGEDLR--TFDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~-----~G~I~idG~di~--~i~~ 609 (782)
.|+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|++||+++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 3899999999963 46999999999999999999999999999999999999974 999999999997 4566
Q ss_pred HhhhhceEEEcccCCCCcc-cHHHHHHcCCCCCC------CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChh
Q 003981 610 SEWARVVSIVNQEPVLFSV-SVGENIAYGLPDEN------VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGG 682 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~g-TIreNI~~G~p~~~------~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGG 682 (782)
..+|++|+||+|++.+|.+ |++||+.++..... ..++++.++++..++.+++. .........||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 6788999999999999975 99999987521001 11234566666666654332 2234567889999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHH
Q 003981 683 QRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 683 QrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~ 761 (782)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778999999999999765 9999999999999999999
Q ss_pred HHHhcc
Q 003981 762 ELLARK 767 (782)
Q Consensus 762 eLl~~~ 767 (782)
++.+..
T Consensus 234 ~~~~~~ 239 (253)
T PRK14267 234 KVFENP 239 (253)
T ss_pred HHHhCC
Confidence 997653
No 113
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=388.02 Aligned_cols=217 Identities=33% Similarity=0.510 Sum_probs=192.2
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCc---cEEEECCeeCCCCChHhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG---GRITVGGEDLRTFDKSEWA 613 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~---G~I~idG~di~~i~~~~lR 613 (782)
.|+++|++|+|+.. ..++|+||||+|++||++||+|++|||||||+++|+|+++|++ |+|++||.++...+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 59999999999732 3469999999999999999999999999999999999999998 8999999999888877889
Q ss_pred hceEEEcccC--CCCcccHHHHHHcCCCCCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 614 RVVSIVNQEP--VLFSVSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 614 ~~Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
++|+||+|++ .+++.|++|||.|+.+....+. +++.++++..++.++....| .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 4678999999998743222333 34667777778777655544 68999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHh
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
+|||||+.+|++|||||||++||..+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988753 789999999999999999999999999999999998865
No 114
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=6.8e-45 Score=400.29 Aligned_cols=215 Identities=32% Similarity=0.511 Sum_probs=189.5
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCc--cEEEECCeeCCCCChHhhh
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG--GRITVGGEDLRTFDKSEWA 613 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~--G~I~idG~di~~i~~~~lR 613 (782)
|.|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++.+.++ .+
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYG---ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEEC---CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 5799999999996 3469999999999999999999999999999999999999999 999999999987665 46
Q ss_pred hceEEEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 614 RVVSIVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
+.|+||+|++.||.. |++|||.|+......+ ++++.++++..++.++..+.| .+||||||||+|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999964 9999999873211223 245667777777777765555 489999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHH
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLMK---GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~---~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
|||||+++|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||.++.+. -||+|+||++|+|++.|+.+|+.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999988764 689999999999875 59999999999999999999998
Q ss_pred hc
Q 003981 765 AR 766 (782)
Q Consensus 765 ~~ 766 (782)
++
T Consensus 228 ~~ 229 (362)
T TIGR03258 228 DA 229 (362)
T ss_pred hC
Confidence 75
No 115
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=387.18 Aligned_cols=216 Identities=31% Similarity=0.469 Sum_probs=190.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
++++||+++|+. ..++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||+++...+...+++.++
T Consensus 4 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 789999999963 246999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcccC--CCCcccHHHHHHcCCCCCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 618 IVNQEP--VLFSVSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 618 ~V~Q~~--~LF~gTIreNI~~G~p~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
||+|++ .+|+.|++|||.++......+. +++.++++..++.+++...| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 4788999999987532112232 34667777777776655443 589999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+++|+++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988754 78999999999998 56999999999999999999999764
No 116
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.5e-45 Score=399.32 Aligned_cols=213 Identities=31% Similarity=0.462 Sum_probs=186.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+.++ .++.|+
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 889999999963 469999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCC----CCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPD----ENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~----~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
||+|++.+|. .|++|||.|+... ...+ ++++.++++..++.++..+. ...||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 9999999997 5999999987421 0122 34566777777776654443 3589999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+|++.|+++|+..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998764 7899999999998655 99999999999999999999986
Q ss_pred c
Q 003981 766 R 766 (782)
Q Consensus 766 ~ 766 (782)
+
T Consensus 227 ~ 227 (353)
T PRK10851 227 E 227 (353)
T ss_pred C
Confidence 5
No 117
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-45 Score=390.27 Aligned_cols=219 Identities=30% Similarity=0.447 Sum_probs=185.5
Q ss_pred EEEEeeEEEcCCCC--CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC----CChHh
Q 003981 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT----FDKSE 611 (782)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~----i~~~~ 611 (782)
|+++||+|+|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997321 1469999999999999999999999999999999999999999999999999864 34567
Q ss_pred hhhceEEEcccC--CCCcccHHHHHHcCCCCCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 612 WARVVSIVNQEP--VLFSVSVGENIAYGLPDENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 612 lR~~Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
+|+.|+||+|+| .+|+.||+|||.|+......+.+ ++.++++.+++++.+ .......|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 888999999998 68999999999987321123333 344555555554211 13345689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~e 762 (782)
|++|||||+.+|+||||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+.++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988753 789999999999885 599999999999999999999
Q ss_pred HHhc
Q 003981 763 LLAR 766 (782)
Q Consensus 763 Ll~~ 766 (782)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8654
No 118
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.1e-44 Score=399.99 Aligned_cols=215 Identities=33% Similarity=0.530 Sum_probs=191.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 14 ~L~l~~l~~~~~---~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 599999999996 34689999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
+||+|++.||. .||+|||.|+......+ ++++.++++..++.++..+.| ..||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 59999999974211122 345677888888888777666 479999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
||+++|++||||||||+||..+...+.+.|+++.+ +.|+|+|||++..+ ..||+|+||++|+|++.|+++++..+.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999998764 78999999999986 459999999999999999999998753
No 119
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=381.32 Aligned_cols=221 Identities=31% Similarity=0.498 Sum_probs=189.8
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--CC
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--FD 608 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~--i~ 608 (782)
|.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999963 4699999999999999999999999999999999999863 69999999999875 45
Q ss_pred hHhhhhceEEEcccCCCCcccHHHHHHcCCCCCC-----CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-----VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 609 ~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~-----~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
...+|+.|+||+|++.+|+.|++|||.++..... ..++++.++++.+++.+.+. .........|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 6678999999999999999999999998631111 12345566666666654332 23455677899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHH
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~e 762 (782)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+.. ||+|++|++|+|++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999998755 99999999999999999999
Q ss_pred HHhc
Q 003981 763 LLAR 766 (782)
Q Consensus 763 Ll~~ 766 (782)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8754
No 120
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-45 Score=380.76 Aligned_cols=218 Identities=32% Similarity=0.486 Sum_probs=185.4
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
++++||+|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGG--GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCC--cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 468999999973 146999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|. .|++||+.++......+ ++++.++++..++.+ +........+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999996 79999998752111112 223444444444332 013345568899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+|++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998753 799999999999764 5999999999999999999998754
No 121
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-45 Score=383.92 Aligned_cols=220 Identities=29% Similarity=0.419 Sum_probs=188.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--C---CccEEEECCeeCCC--CCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE--P---TGGRITVGGEDLRT--FDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~--p---~~G~I~idG~di~~--i~~ 609 (782)
-|+++||+|.|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++ | ++|+|++||+++.. .+.
T Consensus 12 ~l~i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYG---QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEEC---CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 489999999996 3469999999999999999999999999999999999997 3 69999999999864 455
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCC-CCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-VSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~-~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
..+|+.|+||+|++.+|++|++||+.++..... .++ +++.++++..++.+++. .........||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 678899999999999999999999988632111 122 23455566666654432 234566778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999985 4999999999999999999998
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
.+.
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 754
No 122
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=7.8e-45 Score=378.35 Aligned_cols=218 Identities=26% Similarity=0.436 Sum_probs=184.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh-hhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~I 616 (782)
|+++||+++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++|.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 47899999996 3469999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred EEEcccCCCCcc-cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 617 SIVNQEPVLFSV-SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 617 a~V~Q~~~LF~g-TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
+|++|++.+|.+ |++||+.++.+......++..+ .+++++..+ |++.........||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 9999999863211122222211 122333333 55555566778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHh
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+. .||+|++|++|+|++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 4789999999997665 599999999999999999999864
No 123
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=5.1e-45 Score=376.15 Aligned_cols=206 Identities=32% Similarity=0.459 Sum_probs=174.7
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh----h
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE----W 612 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~----l 612 (782)
|+++||+++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997311 157999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hhceEEEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 613 ARVVSIVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 613 R~~Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
++.++||+|++.+|.+ |++|||.++......+ ++++.++++..++.++ ......+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR-----------LNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhcChhhcCHHHHHHH
Confidence 6789999999999986 9999999863211121 2345555555555443 3344568999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHhcCeEEEEeCCEE
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRI 754 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~IiVLd~G~I 754 (782)
+|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998864 7999999999999989999999999975
No 124
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-45 Score=373.76 Aligned_cols=205 Identities=29% Similarity=0.446 Sum_probs=179.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+|+|++ .++|+|+||+|++| .+||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999963 47999999999999 99999999999999999999999999999999999998776 77899999
Q ss_pred EEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|.+ |++|||.+.......+ ++++.++++..++.++. ++ ....||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-------KK----KIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-------hC----chhhCCHHHHHHHHHHHH
Confidence 99999999986 9999998742100111 34566777777776553 33 335799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEec
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELG 758 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~G 758 (782)
|+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+. .||+|++|++|+|++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999877899999999999986 49999999999999875
No 125
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-45 Score=382.12 Aligned_cols=219 Identities=32% Similarity=0.459 Sum_probs=189.9
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCCChHhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTFDKSEW 612 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~i~~~~l 612 (782)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+.+...+
T Consensus 4 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 4 IEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred EEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 899999999963 4699999999999999999999999999999999999984 69999999999998888889
Q ss_pred hhceEEEcccCCCC-cccHHHHHHcCCCCCC------CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 613 ARVVSIVNQEPVLF-SVSVGENIAYGLPDEN------VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 613 R~~Ia~V~Q~~~LF-~gTIreNI~~G~p~~~------~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
|+.|+||+|++.+| +.|++||+.++..... ..++++.++++..++.+.+. +.++ ....+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLD----APAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhc----CCcccCCHHHHH
Confidence 99999999999755 6899999987631100 11345677777777755432 1233 345679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+. .||+|++|++|+|++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999999877899999999999885 59999999999999999999997
Q ss_pred hc
Q 003981 765 AR 766 (782)
Q Consensus 765 ~~ 766 (782)
+.
T Consensus 234 ~~ 235 (250)
T PRK14247 234 TN 235 (250)
T ss_pred cC
Confidence 65
No 126
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=377.11 Aligned_cols=211 Identities=27% Similarity=0.405 Sum_probs=179.8
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh---hh
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---WA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~---lR 613 (782)
++++||+|+|+.+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+++..++... +|
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR 85 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHH
Confidence 89999999997421 147999999999999999999999999999999999999999999999999999887654 33
Q ss_pred -hceEEEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 614 -RVVSIVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 614 -~~Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
+.|+||+|++.+|.. |++||+.++......+ ++++.++++..++.++ ......+||||||||+
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qrl 154 (233)
T PRK11629 86 NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQRV 154 (233)
T ss_pred hccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHH
Confidence 679999999999975 9999998742100112 2345556655555443 3445578999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHhcCeEEEEeCCEEEEecC
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGT 759 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gt 759 (782)
+||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..+|++++|++|+|++.|.
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999874 4899999999999999999999999999998775
No 127
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-44 Score=386.45 Aligned_cols=219 Identities=27% Similarity=0.447 Sum_probs=191.2
Q ss_pred cEEEEeeEEEcCCCC---CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC-hHhh
Q 003981 537 DICLEDVYFSYPLRP---DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD-KSEW 612 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~---~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~-~~~l 612 (782)
-|+++|++|+|++.. ++++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 389999999997421 246999999999999999999999999999999999999999999999999997654 3567
Q ss_pred hhceEEEcccCC--CCcccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHH
Q 003981 613 ARVVSIVNQEPV--LFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQR 686 (782)
Q Consensus 613 R~~Ia~V~Q~~~--LF~gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQR 686 (782)
|+.++||+|+|. +|..|+.|||.|+......+ ++++.++++.+++.++..+.| ..||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 78789999999862111122 355677787888877765544 6899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHH
Q 003981 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 687 IaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..||+|++|++|+|++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 389999999999999889999999999999999999997
Q ss_pred hc
Q 003981 765 AR 766 (782)
Q Consensus 765 ~~ 766 (782)
+.
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
No 128
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-45 Score=387.78 Aligned_cols=214 Identities=32% Similarity=0.515 Sum_probs=185.1
Q ss_pred EEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh----hh
Q 003981 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW----AR 614 (782)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l----R~ 614 (782)
.++||++.|. +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.+++...+ ++
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4568888885 3468999999999999999999999999999999999999999999999999988776553 46
Q ss_pred ceEEEcccCCCCc-ccHHHHHHcCCCCC----CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 003981 615 VVSIVNQEPVLFS-VSVGENIAYGLPDE----NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~-gTIreNI~~G~p~~----~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
+|+||+|++.+|. .|++|||.++.... ...++++.++++..++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 8999999999985 69999998752111 112345677787788777665555 4799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+|++.|+++|+.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988753 799999999999875 4999999999999999999999864
No 129
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=381.70 Aligned_cols=221 Identities=33% Similarity=0.480 Sum_probs=187.9
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~~--i~~ 609 (782)
.|+++||+|+|+ +.++|+|+||+|++||++||+|++|||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 389999999996 3479999999999999999999999999999999999997 489999999999864 345
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC-----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~-----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
..+|+.++||+|++.+|+.|++|||.++...... .++++.++++..++++.+ .........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 6778899999999999999999999876321111 123455666666654311 1223456679999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999765 999999999999999999999
Q ss_pred Hhcc
Q 003981 764 LARK 767 (782)
Q Consensus 764 l~~~ 767 (782)
....
T Consensus 234 ~~~~ 237 (251)
T PRK14251 234 FIAP 237 (251)
T ss_pred HhCC
Confidence 7553
No 130
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.2e-44 Score=381.63 Aligned_cols=215 Identities=29% Similarity=0.429 Sum_probs=183.8
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC---------
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD--------- 608 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~--------- 608 (782)
|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 578999999963 47999999999999999999999999999999999999999999999999987653
Q ss_pred ----hHhhhhceEEEcccCCCCc-ccHHHHHHcCCCC-CCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCC
Q 003981 609 ----KSEWARVVSIVNQEPVLFS-VSVGENIAYGLPD-ENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGL 678 (782)
Q Consensus 609 ----~~~lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p~-~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~ 678 (782)
...+|+.++||+|++.+|. .|++||+.++... .... ++++.++++..++.++ +......
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------ADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hhcChhh
Confidence 2467889999999999985 8999999985210 0112 2334455555555444 3445578
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEE
Q 003981 679 LSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIA 755 (782)
Q Consensus 679 LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Iv 755 (782)
||||||||++|||||+++|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|+|+
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 789999999999985 59999999999999
Q ss_pred EecCHHHHHhc
Q 003981 756 ELGTHFELLAR 766 (782)
Q Consensus 756 e~Gth~eLl~~ 766 (782)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999765
No 131
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=8.6e-45 Score=371.81 Aligned_cols=205 Identities=27% Similarity=0.419 Sum_probs=180.7
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|+ +.++|+|+||++++|+.++|+|++|||||||+++|+|+++|++|+|.++|.++... ..+|+.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 47899999996 34799999999999999999999999999999999999999999999999988765 56788999
Q ss_pred EEcccCCCC-cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 618 IVNQEPVLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 618 ~V~Q~~~LF-~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
||+|++.+| +.|++|||.++......+++++.++++..++.+...+ ....||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 999999888 5899999987632112356778888888888765432 3467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEec
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELG 758 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~G 758 (782)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|+|++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998875 47999999999998865 9999999999999875
No 132
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=381.18 Aligned_cols=220 Identities=31% Similarity=0.475 Sum_probs=188.8
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC---CCC--CccEEEECCeeCCCC--Ch
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF---YEP--TGGRITVGGEDLRTF--DK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl---y~p--~~G~I~idG~di~~i--~~ 609 (782)
.|+++|+++.|+ +.++|+|+||+|++||.++|+|++|||||||+++|+|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEEC---CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 489999999996 34699999999999999999999999999999999997 454 589999999998764 34
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC-----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~-----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
..+|+.|+||+|++.+|+.|++|||.++...... .++++.++++..++.+++. +.....+..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 6788899999999999999999999876321111 2234566666666654442 334567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999878899999999999985 5999999999999999999999
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 764
No 133
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-44 Score=383.11 Aligned_cols=221 Identities=27% Similarity=0.415 Sum_probs=192.1
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CC
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FD 608 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~~--i~ 608 (782)
..|+++||+|+|+ +.++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 3699999999996 3579999999999999999999999999999999999997 589999999999864 34
Q ss_pred hHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC-----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 609 ~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~-----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
...+|+.|+||+|++.+|..|++|||.++...... .++++.++++..++.+++. +........|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 56788999999999999999999999986321111 1344666677777765542 34567788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHH
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~e 762 (782)
|||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999885 599999999999999999999
Q ss_pred HHhc
Q 003981 763 LLAR 766 (782)
Q Consensus 763 Ll~~ 766 (782)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 9764
No 134
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=385.18 Aligned_cols=222 Identities=28% Similarity=0.443 Sum_probs=192.6
Q ss_pred cccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--C
Q 003981 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--F 607 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~--i 607 (782)
.+.|+++||+|+|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEEC---CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 34699999999996 24699999999999999999999999999999999999984 89999999999865 4
Q ss_pred ChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC-----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChh
Q 003981 608 DKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGG 682 (782)
Q Consensus 608 ~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~-----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGG 682 (782)
+...+|+.++||+|++.+|++|++|||.++...... .++++.++++.+++.+++. +..+..+..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 456789999999999999999999999876321111 1244667777777665443 3456778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHH
Q 003981 683 QRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 683 QrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~ 761 (782)
||||++|||||+++|+||||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999999999877899999999999875 59999999999999999999
Q ss_pred HHHhc
Q 003981 762 ELLAR 766 (782)
Q Consensus 762 eLl~~ 766 (782)
++.+.
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 99754
No 135
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=381.93 Aligned_cols=220 Identities=30% Similarity=0.462 Sum_probs=187.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCC--Ch
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTF--DK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~i--~~ 609 (782)
.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 599999999996 34699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
..+|+.++||+|++.+|+.|++|||.++......+. +++.++++.+++.+++ +.........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHH
Confidence 567889999999999999999999997631111222 2355666666664332 12233456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+.+ ||+|++|++|+|++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999855 9999999999999999999997
Q ss_pred hc
Q 003981 765 AR 766 (782)
Q Consensus 765 ~~ 766 (782)
+.
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 54
No 136
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=399.70 Aligned_cols=214 Identities=32% Similarity=0.510 Sum_probs=186.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|
T Consensus 3 ~l~i~~l~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 389999999996 3469999999999999999999999999999999999999999999999999987665 35789
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
+||+|++.+|. .|++|||.|+......+ ++++.++++..++.++..+.| ..||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 59999999874211122 245667777777766544433 579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||+++|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+...
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988753 789999999999875 5999999999999999999999764
No 137
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.2e-44 Score=373.33 Aligned_cols=209 Identities=29% Similarity=0.475 Sum_probs=177.8
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
|+++||+++|++.. ..++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999997421 1269999999999999999999999999999999999999999999999999875 456788999
Q ss_pred EEEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
+||+|++.+|.+ |++|||.+.......+ ++++.++++..++.++ .......||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-----------LDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhhhhhhcCHHHHHHHHHHH
Confidence 999999999985 9999998642111122 2344555555555443 34566789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEec
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELG 758 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~G 758 (782)
|++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 47999999999998765 9999999999999865
No 138
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-44 Score=379.57 Aligned_cols=220 Identities=29% Similarity=0.453 Sum_probs=187.4
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CC---CccEEEECCeeCCCC--Ch
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY--EP---TGGRITVGGEDLRTF--DK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly--~p---~~G~I~idG~di~~i--~~ 609 (782)
-++++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|++ .| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 389999999996 346999999999999999999999999999999999995 46 499999999998643 44
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCC-----CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-----VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~-----~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
..+|+.|+||+|++.+|+.|++||+.++..... ..++++.++++.+++.+.+. +........||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 577889999999999999999999987521101 11234555666666544332 344567788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++||||++++|+||||||||++||..+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877899999999999875 5999999999999999999999
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
.+.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 765
No 139
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-45 Score=382.65 Aligned_cols=219 Identities=28% Similarity=0.448 Sum_probs=188.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCCCC--hH
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRTFD--KS 610 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~~i~--~~ 610 (782)
-+++||+|+|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++ |++|+|+++|.++.+.+ ..
T Consensus 6 ~~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 46899999996 3479999999999999999999999999999999999986 47999999999987653 34
Q ss_pred hhhhceEEEcccCCCCcccHHHHHHcCCCCCC------CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPDEN------VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~------~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
.+|+.++||+|++.+|++|++|||.++....+ ..++++.++++..++.+++ .+.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 67889999999999999999999987621101 1234456667776665432 2344566788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+.. ||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
.+.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 865
No 140
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.9e-44 Score=372.60 Aligned_cols=207 Identities=29% Similarity=0.455 Sum_probs=174.4
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh---hh
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---WA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~---lR 613 (782)
|+++||+++|++.. ..++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996321 246999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -hceEEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 614 -RVVSIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 614 -~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
+.|+||+|++.+|. .|++||+.++......+ ++++.++++..++++ ........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-----------RINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHH
Confidence 68999999999995 69999998742100112 223444454444433 33344578999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHhcCeEEEEeCCEEE
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQNAHQIALCSDGRIA 755 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~aD~IiVLd~G~Iv 755 (782)
+|||||+++|+||||||||++||..+++.+.+.|+++. .++|+|+|||++..+..||+|++|++|+|+
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999875 378999999999999999999999999986
No 141
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-44 Score=383.01 Aligned_cols=216 Identities=31% Similarity=0.472 Sum_probs=186.3
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC-hHhhhhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD-KSEWARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~-~~~lR~~I 616 (782)
|+++||+|+|+. +.++|+||||+|++||.+||+|++|||||||+++|+|+++|++|+|.++|.++...+ ...+++.|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999962 346999999999999999999999999999999999999999999999999998775 46788899
Q ss_pred EEEcccCC--CCcccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 617 SIVNQEPV--LFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 617 a~V~Q~~~--LF~gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
+||+|+|. +|+.|++|||.++......+ ++++.++++..++.+++ ......||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-----------HRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCCcccCCHHHHHHHHHH
Confidence 99999985 67889999999863211122 23455555555555443 334568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|||+.+|+||||||||++||+.+...+.+.|+++. +++|+|++||++..+..||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998875 48999999999999999999999999999999999988653
No 142
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-44 Score=382.45 Aligned_cols=218 Identities=28% Similarity=0.411 Sum_probs=189.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++|
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999742 34699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcccCC--CCcccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 617 SIVNQEPV--LFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 617 a~V~Q~~~--LF~gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
+||+|++. ++..|+++|+.++......+ ++++.++++..++.++.. ....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 55678999998863211122 234556666666655432 34568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+..||+|++|++|+|++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 7899999999999988999999999999999999998765
No 143
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-44 Score=382.97 Aligned_cols=223 Identities=28% Similarity=0.421 Sum_probs=192.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.|
T Consensus 11 ~l~i~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVP---GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEEC---CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 489999999996 34799999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCC--------CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPD--------ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~--------~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
+||+|++.+|. .|++||+.++... +...++++.++++.+++.+++...| ..||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 99999987765 4999999986310 0112456777888888766554443 47999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHH
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
+|||||+.+|+||||||||++||..+.+.+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|+|++.|+.+|+.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999998753 789999999999985 59999999999999999999986
Q ss_pred hccCchHHHH
Q 003981 765 ARKGQYASLV 774 (782)
Q Consensus 765 ~~~g~Y~~L~ 774 (782)
.. ..+.+++
T Consensus 237 ~~-~~~~~~~ 245 (265)
T PRK10575 237 RG-ETLEQIY 245 (265)
T ss_pred CH-HHHHHHh
Confidence 53 2344444
No 144
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-44 Score=377.61 Aligned_cols=220 Identities=27% Similarity=0.451 Sum_probs=189.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----ccEEEECCeeCCC--CCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT-----GGRITVGGEDLRT--FDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~-----~G~I~idG~di~~--i~~ 609 (782)
.|+++||+|+|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~---~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEEC---CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 489999999996 346999999999999999999999999999999999999997 6999999999865 345
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCC-----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVS-----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s-----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
..+|+.++||+|++.+|+.|++|||.++....... ++.+.++++..++.+++ .......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHH
Confidence 67899999999999999999999999863211111 23344455555554433 2345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 799999999999999999998
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 754
No 145
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-44 Score=372.69 Aligned_cols=211 Identities=29% Similarity=0.417 Sum_probs=181.8
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|+ +.++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEEC---CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 47899999996 34799999999999999999999999999999999999999999999999988753 356788999
Q ss_pred EEcccCCCCcc-cHHHHHHcCCCCCCC----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p~~~~----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|.. |++|||.++...... .++++.++++..++.++.... ...||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999875 999999874211011 234566777777776654332 35799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988753 7899999999998865 999999999999999998875
No 146
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-44 Score=376.01 Aligned_cols=214 Identities=28% Similarity=0.419 Sum_probs=181.7
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh-hhhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~I 616 (782)
|+++||+++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++|.++...+... +++.+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeC---CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 47899999996 347999999999999999999999999999999999999999999999999998887654 46789
Q ss_pred EEEcccCCCCcc-cHHHHHHcCCCCCCCCHHH-HHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 617 SIVNQEPVLFSV-SVGENIAYGLPDENVSKDD-IIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 617 a~V~Q~~~LF~g-TIreNI~~G~p~~~~s~ee-i~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+|++|++.+|.. |++||+.++.......+++ ..++++.. ++++.........||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~----------~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELF----------PVLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHH----------HhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999999863211112222 22222222 22333445566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999998764 7899999999999985 9999999999999999999983
No 147
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3e-44 Score=379.81 Aligned_cols=218 Identities=28% Similarity=0.420 Sum_probs=186.2
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCC--------
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF-------- 607 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i-------- 607 (782)
+.|+++||+|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..+
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 4699999999996 34799999999999999999999999999999999999999999999999988642
Q ss_pred -----ChHhhhhceEEEcccCCCCc-ccHHHHHHcCCC-CCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCC
Q 003981 608 -----DKSEWARVVSIVNQEPVLFS-VSVGENIAYGLP-DENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERG 676 (782)
Q Consensus 608 -----~~~~lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p-~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G 676 (782)
....+|+.++||+|++.+|. .|++||+.++.. ..... ++++.++++..++.++.. ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 13567889999999999997 599999987410 00111 234555565555544321 3456
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEE
Q 003981 677 GLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRI 754 (782)
Q Consensus 677 ~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~I 754 (782)
..||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7899999999999999999999999999999999999999999999875 48999999999999986 999999999999
Q ss_pred EEecCHHHHHhc
Q 003981 755 AELGTHFELLAR 766 (782)
Q Consensus 755 ve~Gth~eLl~~ 766 (782)
++.|+++++.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999999764
No 148
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-44 Score=370.19 Aligned_cols=212 Identities=30% Similarity=0.496 Sum_probs=186.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++|++|+|.+ . ++|+||||+|++|++++||||+|||||||+|+|+|+.+|++|+|.+.|.+.+.... +..|
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 4999999999963 3 69999999999999999999999999999999999999999999999998766543 5679
Q ss_pred EEEcccC---CCCcccHHHHHHcCCCCC--------CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 617 SIVNQEP---VLFSVSVGENIAYGLPDE--------NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 617 a~V~Q~~---~LF~gTIreNI~~G~p~~--------~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
|||||.. |=|.-||+|=+.+|+... ..+.+++.+|++.+++.++. |-+||| |||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i~~----LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQIGE----LSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCcccc----cCcHHHH
Confidence 9999955 669999999999984311 12358999999999999985 345555 9999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
|+-|||||+.+|++|+|||||+++|+.++..|.+-|+++.+ |||+++|+|.|+.+.. +|+|+.|++ +++..|+.+|.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhc
Confidence 99999999999999999999999999999999999998875 8999999999999865 999998864 67778998888
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
...
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 653
No 149
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3e-44 Score=370.50 Aligned_cols=210 Identities=32% Similarity=0.460 Sum_probs=188.3
Q ss_pred EEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh----Hhhhh
Q 003981 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK----SEWAR 614 (782)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~----~~lR~ 614 (782)
.+.|+.|+|+. +.++++|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 46799999973 3579999999999999999999999999999999999999999999999998876543 34567
Q ss_pred ceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
.++|++|++.+|+.|++|||.++.+ .++++..++++..++.+++..+|.|++|.++....+||||||||++||||++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP---FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY 156 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc---CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh
Confidence 8999999999999999999998743 3466778888999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCcEEEEEecChhHHHhcCeEEEEeCCE
Q 003981 695 KNAPILILDEATSALDAVSERLVQD--ALNHLM-KGRTTLVIAHRLSTVQNAHQIALCSDGR 753 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~--~L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~G~ 753 (782)
++|+||||||||++||..+...+.+ .++.+. .++|+|++||+++.+..||+|++|++|.
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999999888877 444443 3789999999999999999999999984
No 150
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-44 Score=377.67 Aligned_cols=227 Identities=28% Similarity=0.447 Sum_probs=192.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCC--ChH
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTF--DKS 610 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~i--~~~ 610 (782)
|+++||+|+|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 4 l~~~~l~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 4 IEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred EEEEeeEEEeC---CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 89999999996 34799999999999999999999999999999999999984 899999999998653 345
Q ss_pred hhhhceEEEcccCCCCcccHHHHHHcCCCCCC-----CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-----VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~-----~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
.+|+.++|++|++.+|..|++||+.++..... ..++++.++++..++++.+. +.......+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHHH
Confidence 67889999999999999999999997521101 12334566777777655432 2345677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
|++|||||+++|+||||||||++||..+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999877899999999999765 59999999999999999999997
Q ss_pred hcc-CchHHHH
Q 003981 765 ARK-GQYASLV 774 (782)
Q Consensus 765 ~~~-g~Y~~L~ 774 (782)
+.. ..|.+.+
T Consensus 234 ~~~~~~~~~~~ 244 (250)
T PRK14262 234 ERPKNKLTEEY 244 (250)
T ss_pred hCCCChHHHHH
Confidence 653 2344443
No 151
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=387.32 Aligned_cols=218 Identities=24% Similarity=0.420 Sum_probs=184.0
Q ss_pred EEEEeeEEEcCCCC--CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC---------
Q 003981 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT--------- 606 (782)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~--------- 606 (782)
|+++||+|+|++.. +.++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999997421 1369999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CChHhhhhceEEEcccC--CCCcccHHHHHHcCCCCCCCCHH----HHHHHHHHhcch-hHHHhC
Q 003981 607 ---------------FDKSEWARVVSIVNQEP--VLFSVSVGENIAYGLPDENVSKD----DIIKAAKAANAH-DFIISL 664 (782)
Q Consensus 607 ---------------i~~~~lR~~Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~e----ei~~A~~~a~l~-dfI~~L 664 (782)
.+...+|+.|+||+|+| .+|..||+|||.|+......+.+ ++.++++..++. ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 13467889999999986 78999999999987321123333 345555555553 22
Q ss_pred CCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHH-Hh
Q 003981 665 PQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTV-QN 742 (782)
Q Consensus 665 P~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti-~~ 742 (782)
.......||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||++..+ +.
T Consensus 159 -------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 159 -------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 234567899999999999999999999999999999999999999999998875 489999999999976 56
Q ss_pred cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 743 AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 743 aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||+|++|++|+|++.|+.+++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998654
No 152
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-44 Score=377.49 Aligned_cols=215 Identities=27% Similarity=0.367 Sum_probs=181.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC------CCChHh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR------TFDKSE 611 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~------~i~~~~ 611 (782)
|+++||+|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...
T Consensus 3 l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYG---AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEEC---CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 78999999996 347999999999999999999999999999999999999999999999999873 223467
Q ss_pred hhhceEEEcccCCCCcc-cHHHHHHcCCC-CCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 612 WARVVSIVNQEPVLFSV-SVGENIAYGLP-DENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 612 lR~~Ia~V~Q~~~LF~g-TIreNI~~G~p-~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
+|++|+||+|++.+|.+ |++|||.++.. ....+. +++.++++..++.+ .+.....+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-----------YADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHH
Confidence 78899999999999975 99999975310 001222 23344444444433 344445689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
|++||||++++|+||||||||++||+++...+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999875 48999999999999865 999999999999999999987
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
.+.
T Consensus 229 ~~~ 231 (242)
T PRK11124 229 TQP 231 (242)
T ss_pred cCc
Confidence 643
No 153
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.5e-44 Score=392.18 Aligned_cols=226 Identities=28% Similarity=0.419 Sum_probs=187.9
Q ss_pred cEEEEeeEEEcCCCC----------CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC
Q 003981 537 DICLEDVYFSYPLRP----------DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT 606 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~----------~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~ 606 (782)
-|+++|++++|+.+. ...+++||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 389999999997321 2469999999999999999999999999999999999999999999999999998
Q ss_pred CChHh---hhhceEEEcccC--CCC-cccHHHHHHcCCC-C-CCCCHHH----HHHHHHHhcchhHHHhCCCCccccccC
Q 003981 607 FDKSE---WARVVSIVNQEP--VLF-SVSVGENIAYGLP-D-ENVSKDD----IIKAAKAANAHDFIISLPQGYDTLVGE 674 (782)
Q Consensus 607 i~~~~---lR~~Ia~V~Q~~--~LF-~gTIreNI~~G~p-~-~~~s~ee----i~~A~~~a~l~dfI~~LP~GldT~VGE 674 (782)
++..+ +|++|+||+|+| .|| ..||.|||.++.. . ...+.++ +.++++.+++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 87654 678999999999 477 5899999975310 0 1134333 344455555421 11234
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeC
Q 003981 675 RGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSD 751 (782)
Q Consensus 675 ~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~ 751 (782)
....||||||||++|||||+.+|++||+|||||+||..+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4568999999999999999999999999999999999999999999998764 7899999999999976 999999999
Q ss_pred CEEEEecCHHHHHhcc-CchHH
Q 003981 752 GRIAELGTHFELLARK-GQYAS 772 (782)
Q Consensus 752 G~Ive~Gth~eLl~~~-g~Y~~ 772 (782)
|+|+|.|+.+++.+.. ..|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999998753 34544
No 154
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-44 Score=377.58 Aligned_cols=221 Identities=25% Similarity=0.409 Sum_probs=188.9
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--C---CccEEEECCeeCCCC--C
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE--P---TGGRITVGGEDLRTF--D 608 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~--p---~~G~I~idG~di~~i--~ 608 (782)
+.|+++|++|+|+ +.++|+|+||+|++||.++|+|++|||||||+++|+|+++ | ++|+|++||.++... +
T Consensus 3 ~~l~~~nl~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFG---KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 4699999999996 3469999999999999999999999999999999999986 4 699999999998653 4
Q ss_pred hHhhhhceEEEcccCCCCc-ccHHHHHHcCCCCCC-CC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChh
Q 003981 609 KSEWARVVSIVNQEPVLFS-VSVGENIAYGLPDEN-VS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGG 682 (782)
Q Consensus 609 ~~~lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~-~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGG 682 (782)
...+|+.|+||+|++.+|. .|++|||.++..... .+ ++++.++++..++.+++.. ........||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 5567899999999999998 699999987521101 11 2445666777776554432 233467789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHH
Q 003981 683 QRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 683 QrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~ 761 (782)
||||++||||++.+|++|||||||++||..+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999985 59999999999999999999
Q ss_pred HHHhc
Q 003981 762 ELLAR 766 (782)
Q Consensus 762 eLl~~ 766 (782)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 99754
No 155
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.7e-44 Score=376.30 Aligned_cols=215 Identities=29% Similarity=0.438 Sum_probs=183.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCC--ChHhhhhc
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF--DKSEWARV 615 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i--~~~~lR~~ 615 (782)
|+++|++++|+ +.++|+|+||++++||+++|+|++|||||||+++|+|+++|++|+|.+||.++... +...+|+.
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 68999999996 34699999999999999999999999999999999999999999999999998764 34577889
Q ss_pred eEEEcccCCCCc-ccHHHHHHcCCC-CCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 003981 616 VSIVNQEPVLFS-VSVGENIAYGLP-DENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 616 Ia~V~Q~~~LF~-gTIreNI~~G~p-~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
++|++|++.+|. .|++||+.++.. ....+.+ ++.++++.. |++.........||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKV-----------GLAERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHc-----------CChHHHhcChhhcCHHHHHHHHH
Confidence 999999999886 699999988621 0112222 233444433 34444445557899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|||++++|+||||||||++||..+...+.+.|+++. +++|+|+|||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999998875 47999999999999865 999999999999999999998754
No 156
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.9e-44 Score=398.88 Aligned_cols=215 Identities=29% Similarity=0.521 Sum_probs=193.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|+ ++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|+++|.++.+++..+++++|+
T Consensus 4 L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 4 IDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred EEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 89999999996 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCC-CcccHHHHHHcCCC-C-------CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 618 IVNQEPVL-FSVSVGENIAYGLP-D-------ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 618 ~V~Q~~~L-F~gTIreNI~~G~p-~-------~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
||+|++.+ |+.|++||+.+++. . ...+++++.++++..++.++..+ ....||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 99999998 78999999998741 0 11234567888888888776533 34679999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|||||+++|+||||||||++||+.+...+.+.|+++. +++|+|+++|+++.+ +.||+|++|++|+|++.|+++|++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999886 488999999999999 55999999999999999999998753
No 157
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-44 Score=378.28 Aligned_cols=229 Identities=26% Similarity=0.389 Sum_probs=192.9
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCC--Ch
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTF--DK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~i--~~ 609 (782)
.|+++||+|+|+ +.++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.++|+++.+. +.
T Consensus 6 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYG---EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEEC---CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 489999999996 34799999999999999999999999999999999999763 489999999999876 45
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC-C----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-S----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~-s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
...|+.|+||+|++.+|+.|++|||.++...... . ++++.++++.+++.+. +.+.....+..||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHH
Confidence 6778899999999999999999999986321111 1 2344555555555433 33456777889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++||||++.+|+++||||||++||..+.+.+.+.|+++.+++|+|++||++..+. .||+|++|++|+|++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999999877899999999999986 5999999999999999999999
Q ss_pred HhccC-chHHHHH
Q 003981 764 LARKG-QYASLVC 775 (782)
Q Consensus 764 l~~~g-~Y~~L~~ 775 (782)
..... .+.+.+.
T Consensus 236 ~~~~~~~~~~~~~ 248 (253)
T PRK14261 236 FENPHEELTENYI 248 (253)
T ss_pred HhCCCcHHHHHHh
Confidence 76432 3444443
No 158
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.9e-44 Score=380.55 Aligned_cols=227 Identities=31% Similarity=0.443 Sum_probs=187.8
Q ss_pred EEEEeeEEEcCCC------CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh
Q 003981 538 ICLEDVYFSYPLR------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611 (782)
Q Consensus 538 I~f~nVsF~Y~~~------~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~ 611 (782)
|+++||+|+|+.. .+.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1357999999999999999999999999999999999999999999999999998877643
Q ss_pred ---hhhceEEEcccCC--CC-cccHHHHHHcCCC-----CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCC
Q 003981 612 ---WARVVSIVNQEPV--LF-SVSVGENIAYGLP-----DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLS 680 (782)
Q Consensus 612 ---lR~~Ia~V~Q~~~--LF-~gTIreNI~~G~p-----~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LS 680 (782)
+|+.|+||+|++. ++ ..|++|||.++.. .....++++.++++..++.+ .........||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 6788999999983 44 4799999975421 00112334555555554431 12345667899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEe
Q 003981 681 GGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAEL 757 (782)
Q Consensus 681 GGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~ 757 (782)
||||||++|||||+.+|+||||||||++||+.+++.+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|+|++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998764 789999999999997 4999999999999999
Q ss_pred cCHHHHHhccC-chHHHH
Q 003981 758 GTHFELLARKG-QYASLV 774 (782)
Q Consensus 758 Gth~eLl~~~g-~Y~~L~ 774 (782)
|+++++..... .|+.+.
T Consensus 233 g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCCCCHHHHHHH
Confidence 99999987433 444443
No 159
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-44 Score=383.05 Aligned_cols=219 Identities=30% Similarity=0.439 Sum_probs=184.0
Q ss_pred EEEEeeEEEcCCCC--CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCC----ChHh
Q 003981 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF----DKSE 611 (782)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i----~~~~ 611 (782)
|+++||+|+|+.+. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 14699999999999999999999999999999999999999999999999998764 3567
Q ss_pred hhhceEEEcccC--CCCcccHHHHHHcCCCCCCCCHHHH----HHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 612 WARVVSIVNQEP--VLFSVSVGENIAYGLPDENVSKDDI----IKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 612 lR~~Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~eei----~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
+|+.|+||+|++ .+|+.|++|||.++......+.++. .++++..++.+ .........|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 889999999998 6889999999987621112333333 33333333321 1234556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eL 763 (782)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998875 3789999999999885 4999999999999999999998
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 653
No 160
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-44 Score=381.60 Aligned_cols=220 Identities=25% Similarity=0.398 Sum_probs=187.8
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~~--i~~ 609 (782)
-|+++|++|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 489999999996 3469999999999999999999999999999999999865 799999999999865 345
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCC-----CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-----VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~-----~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
..+|+.|+||+|++.+|++|++||+.++..... ..++.+.++++..++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 577889999999999999999999987521101 11234556666666543221 234566788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877889999999999875 5999999999999999999998
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
...
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 764
No 161
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-44 Score=379.25 Aligned_cols=221 Identities=29% Similarity=0.446 Sum_probs=189.6
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CC
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FD 608 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~~--i~ 608 (782)
..|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEEC---CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 4599999999996 3469999999999999999999999999999999999987 699999999999863 56
Q ss_pred hHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC---CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV---SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 609 ~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~---s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
...+|+.|+||+|++.+|..|++|||.++...... .++++.++++.+++.+. +++........|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHH
Confidence 77889999999999999999999999986421111 13445566666655432 233445567789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeC-----------CE
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSD-----------GR 753 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~-----------G~ 753 (782)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+. .||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 99999999999999999999999999999999999999877899999999999875 5999999996 67
Q ss_pred EEEecCHHHHHhc
Q 003981 754 IAELGTHFELLAR 766 (782)
Q Consensus 754 Ive~Gth~eLl~~ 766 (782)
|+|.|+.+++...
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999764
No 162
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.7e-44 Score=369.43 Aligned_cols=205 Identities=33% Similarity=0.558 Sum_probs=175.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|+. .++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++...+.. ++.++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999963 4799999999999999999999999999999999999999999999999999766543 56899
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|. .|++||+.++......+ ++++.++++..++.++.. .....||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-----------RKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999985 69999998762111122 234455566666655443 3346899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEec
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELG 758 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~G 758 (782)
|+++|+|+||||||++||+.+.+.+.+.|+++. .++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999875 37999999999998866 9999999999999876
No 163
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-44 Score=382.06 Aligned_cols=220 Identities=27% Similarity=0.421 Sum_probs=187.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~~--i~~ 609 (782)
-++++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 4999999999963 469999999999999999999999999999999999987 699999999999853 456
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCH-----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSK-----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~-----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
..+|++++||+|++.+|..|++|||.++......++ +.+.++++..++.+ ++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 678899999999999999999999997632111222 22334444333322 333445677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998878999999999999865 999999999999999999999
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
...
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 765
No 164
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=9.5e-45 Score=348.93 Aligned_cols=209 Identities=30% Similarity=0.433 Sum_probs=187.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC---hHhhhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD---KSEWAR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~---~~~lR~ 614 (782)
|+|+||+..|+. ++++|+||||+|++||++-++|||||||||++|||++...|+.|+|.++|.|+..+. ..-+|+
T Consensus 2 I~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 899999999984 467999999999999999999999999999999999999999999999999998876 445899
Q ss_pred ceEEEcccCCCC-cccHHHHHHcC-----CCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 615 VVSIVNQEPVLF-SVSVGENIAYG-----LPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 615 ~Ia~V~Q~~~LF-~gTIreNI~~G-----~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
+||+|+||--|. +-|+.||++|. .+. ..-.+++.++++.+++.+-...|| ..|||||+||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~-~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRva 147 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPP-REIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVA 147 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCH-HHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHH
Confidence 999999999976 57999999984 331 223567889999999999999888 569999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhc-CeEEEEeCCEEEEecCH
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNA-HQIALCSDGRIAELGTH 760 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~a-D~IiVLd~G~Ive~Gth 760 (782)
||||++.+|++||=||||-+||+.+...|.+.+.++- .|.||++.||..+.+..+ -+++.+++|+++....+
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 9999999999999999999999999999999988875 588999999999999775 57889999999975543
No 165
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-44 Score=359.52 Aligned_cols=216 Identities=31% Similarity=0.447 Sum_probs=192.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC---hHhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD---KSEWA 613 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~---~~~lR 613 (782)
.|+++||+..||+ ++.+|+||||+|++||+|||+|+||||||||++.|.|+.+|++|+|.++|.++...+ +..||
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 3899999999983 578999999999999999999999999999999999999999999999999998888 66788
Q ss_pred hceEEEcccCCCCc-ccHHHHHHcCCCC------------CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCC
Q 003981 614 RVVSIVNQEPVLFS-VSVGENIAYGLPD------------ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLS 680 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~-gTIreNI~~G~p~------------~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LS 680 (782)
++|||++|++-|-+ -|+.+|++.|+-. +..+..+..+|++..++.|..- .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 99999999999976 6999999988421 1123345667788888877643 5788999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEe
Q 003981 681 GGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAEL 757 (782)
Q Consensus 681 GGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~ 757 (782)
|||+||++|||||.++|+|++=|||+|+||+++.+.|++.|++.. .|.|+|+.-|.+.+.++ ||||+=|++|+||-.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998765 58899999999999865 999999999999999
Q ss_pred cCHHHHHh
Q 003981 758 GTHFELLA 765 (782)
Q Consensus 758 Gth~eLl~ 765 (782)
|+.+||-+
T Consensus 230 g~~~el~~ 237 (258)
T COG3638 230 GPASELTD 237 (258)
T ss_pred CChhhhhH
Confidence 99999754
No 166
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-44 Score=379.50 Aligned_cols=222 Identities=27% Similarity=0.452 Sum_probs=191.9
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|+ +.++|+|+||+|++|++++|+|++|||||||+++|+|+++|++|+|.++|.++.+++...+++.++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 78999999996 357999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcccCCCCcc-cHHHHHHcCCCC--------CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLPD--------ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p~--------~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
||+|++.+|.+ |++||+.++... +...++++.++++..++.++.. .....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 99999999876 999999986310 0112345666777666655433 345789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|++||++..+. .||+|++|++|+|++.|+.+++...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999998875 4799999999999986 5999999999999999999998653
Q ss_pred cCchHHHH
Q 003981 767 KGQYASLV 774 (782)
Q Consensus 767 ~g~Y~~L~ 774 (782)
..+.+.+
T Consensus 229 -~~~~~~~ 235 (255)
T PRK11231 229 -GLLRTVF 235 (255)
T ss_pred -HHHHHHh
Confidence 3455554
No 167
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-44 Score=376.11 Aligned_cols=220 Identities=28% Similarity=0.483 Sum_probs=189.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCC-CCChH
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLR-TFDKS 610 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~-~i~~~ 610 (782)
.++++||+++|+ +.++|+|+||+|++||.++|+|++|||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEEC---CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 388999999996 35699999999999999999999999999999999999986 5999999999985 45677
Q ss_pred hhhhceEEEcccCCCCcccHHHHHHcCCCCCCCC-----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPDENVS-----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s-----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
.+|+.++||+|++.+|..|++|||.++....... ++++.++++.+++.+.+ .+.+......|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHH
Confidence 8899999999999999999999999863211111 23445566666665433 23445567789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+.. ||+|++|++|+|++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999999986
Q ss_pred hc
Q 003981 765 AR 766 (782)
Q Consensus 765 ~~ 766 (782)
..
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 53
No 168
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.4e-44 Score=380.97 Aligned_cols=225 Identities=24% Similarity=0.398 Sum_probs=187.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChH---hhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWA 613 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~---~lR 613 (782)
-|+++||+|+|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 489999999996 35799999999999999999999999999999999999999999999999999877653 357
Q ss_pred hceEEEcccCCCCcc-cHHHHHHcCCCC-CCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 614 RVVSIVNQEPVLFSV-SVGENIAYGLPD-ENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~g-TIreNI~~G~p~-~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
+.|+||+|++.+|.+ |++|||.++... ...+. +++.++++..++.+.. ......||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-----------KLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 789999999999986 999999875211 11222 2344455554444332 233467999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
+|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+|++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999998865 9999999999999999999998
Q ss_pred hcc-CchHHHHH
Q 003981 765 ARK-GQYASLVC 775 (782)
Q Consensus 765 ~~~-g~Y~~L~~ 775 (782)
+.. ..+..++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 643 33455543
No 169
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-44 Score=371.34 Aligned_cols=207 Identities=32% Similarity=0.471 Sum_probs=176.4
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
|+++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997311 1579999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCC----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
+||+|++.+|. .|++|||.++...... .++++.++++..++.++..+.| ..||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999997 7999999875211111 2345666777666665544433 579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHH-hcCeEEEEe--CCEEEEecCH
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQ-NAHQIALCS--DGRIAELGTH 760 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~-~aD~IiVLd--~G~Ive~Gth 760 (782)
||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|+ +|+|++.++-
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998874 3789999999999775 599999999 7999998874
No 170
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-44 Score=380.79 Aligned_cols=221 Identities=25% Similarity=0.436 Sum_probs=189.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCCC-hH
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTFD-KS 610 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~i~-~~ 610 (782)
.++++||+|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFA---GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEEC---CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 489999999996 35799999999999999999999999999999999999986 6999999999998764 45
Q ss_pred hhhhceEEEcccCCCCcccHHHHHHcCCCC-CCCCHHHHHH----HHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPD-ENVSKDDIIK----AAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~-~~~s~eei~~----A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
.+|+.|+||+|++.+|+.|++|||.++... ...+++++.+ +++..++ ++.+++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL-------WDAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC-------CchhhhHhhCCcccCCHHHHH
Confidence 778999999999999999999999986321 1134444432 2333333 333334556778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
|++|||||+.+|+||||||||++||..+.+.+.+.|+++.+++|+|+|||++..+.. ||+|++|++|+|++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777999999999998765 9999999999999999999998
Q ss_pred hcc
Q 003981 765 ARK 767 (782)
Q Consensus 765 ~~~ 767 (782)
+..
T Consensus 251 ~~~ 253 (276)
T PRK14271 251 SSP 253 (276)
T ss_pred hCc
Confidence 653
No 171
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-44 Score=384.00 Aligned_cols=225 Identities=28% Similarity=0.498 Sum_probs=183.7
Q ss_pred cccEEEEeeEEEcCCCC--CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC----C-
Q 003981 535 SGDICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT----F- 607 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~--~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~----i- 607 (782)
.+.|+++||+++|++.. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35799999999997421 1359999999999999999999999999999999999999999999999999852 2
Q ss_pred ChHhhhhceEEEcccC--CCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 608 DKSEWARVVSIVNQEP--VLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 608 ~~~~lR~~Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
+...+|+.|+||+|++ .+|..|++|||.++......+.++..+.+. .+.+. ..||+++ .......|||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~ll~~-~~L~~~~---~~~~~~~LS~Gq~q 157 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVP--ELLKL-VQLPEDY---VKRSPFELSGGQKR 157 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHH-cCCChhH---hcCChhhCCHHHHH
Confidence 4567888999999998 578899999999863211223333322221 11111 1233322 34566789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~e 762 (782)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988753 789999999999875 599999999999999999988
Q ss_pred HHh
Q 003981 763 LLA 765 (782)
Q Consensus 763 Ll~ 765 (782)
+..
T Consensus 238 ~~~ 240 (289)
T PRK13645 238 IFS 240 (289)
T ss_pred Hhc
Confidence 764
No 172
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.6e-44 Score=368.65 Aligned_cols=204 Identities=32% Similarity=0.474 Sum_probs=174.9
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh---Hhhhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK---SEWAR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~---~~lR~ 614 (782)
|+++||+++|++ ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 468999999963 2469999999999999999999999999999999999999999999999999987764 35788
Q ss_pred ceEEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 003981 615 VVSIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
.|+||+|++.+|. .|++|||.++......+ ++++.++++..++.+..... ..+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHH
Confidence 9999999999998 59999998763211122 23456666666665544333 35799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEE
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRI 754 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~I 754 (782)
||||+++|+|+||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.+ ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 58999999999999976 899999999975
No 173
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.7e-44 Score=368.92 Aligned_cols=203 Identities=33% Similarity=0.557 Sum_probs=174.2
Q ss_pred EEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEE
Q 003981 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (782)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 618 (782)
+++||+++|+++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999732 2579999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EcccC--CCCcccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 619 VNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 619 V~Q~~--~LF~gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
++|++ .+++.|++||+.++......+ ++++.++++..++.+++. .....||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99998 467899999998863211122 234455555555554433 3457899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHh-cCeEEEEeCCE
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQN-AHQIALCSDGR 753 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~-aD~IiVLd~G~ 753 (782)
|+++|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999988754 7899999999999987 99999999985
No 174
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-44 Score=394.61 Aligned_cols=215 Identities=30% Similarity=0.506 Sum_probs=187.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.++++ .++.|
T Consensus 19 ~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred eEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 599999999996 3469999999999999999999999999999999999999999999999999987664 57889
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
+||+|++.||. .|++|||.|+......+ .+++.++++..++.++..+.| ..||||||||+||||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 59999999974211222 245566677777766554444 479999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
||+++|++|+||||||+||..+...+.+.|+++. .+.|+|+|||++..+ .-||+|+||++|+|++.|+.+|+..+.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999998887764 378999999999986 559999999999999999999998753
No 175
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=6.9e-44 Score=375.50 Aligned_cols=215 Identities=31% Similarity=0.431 Sum_probs=182.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC--------h
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD--------K 609 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~--------~ 609 (782)
++++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||+++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999963 46999999999999999999999999999999999999999999999999987542 3
Q ss_pred HhhhhceEEEcccCCCCc-ccHHHHHHcCCC-CCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 610 SEWARVVSIVNQEPVLFS-VSVGENIAYGLP-DENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p-~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
..+|+.++||+|++.+|. .|++||+.++.. ......+ ++.++++.. |++.........|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKV-----------GLAGKETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCcchhhCChhhCChHH
Confidence 567889999999999986 799999987421 0112222 233333333 33333445678899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHH
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~ 761 (782)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+|++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999988764 8899999999999865 9999999999999999999
Q ss_pred HHHhc
Q 003981 762 ELLAR 766 (782)
Q Consensus 762 eLl~~ 766 (782)
++.+.
T Consensus 230 ~~~~~ 234 (250)
T PRK11264 230 ALFAD 234 (250)
T ss_pred HHhcC
Confidence 98754
No 176
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.3e-44 Score=373.50 Aligned_cols=214 Identities=25% Similarity=0.439 Sum_probs=184.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh-hhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~I 616 (782)
|+++|++++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++...+.... |+.+
T Consensus 3 i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFD---GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 78999999996 3479999999999999999999999999999999999999999999999999988776654 5579
Q ss_pred EEEcccCCCCcc-cHHHHHHcCCCCCC--------C----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 617 SIVNQEPVLFSV-SVGENIAYGLPDEN--------V----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 617 a~V~Q~~~LF~g-TIreNI~~G~p~~~--------~----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
+|++|++.+|.+ |++||+.++..... . .++++.++++.. |++.........|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-----------GLADEADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHH
Confidence 999999999986 99999998632100 0 112233333333 34444455667899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHH
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~e 762 (782)
|||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.+ ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999975 99999999999999999999
Q ss_pred HHh
Q 003981 763 LLA 765 (782)
Q Consensus 763 Ll~ 765 (782)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 864
No 177
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.2e-44 Score=358.65 Aligned_cols=178 Identities=38% Similarity=0.675 Sum_probs=167.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++|+|+.. +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999742 24699999999999999999999999999999999999999999999999988776 667889999
Q ss_pred EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA 697 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p 697 (782)
||+|++.+|+.|++||| ...||||||||++||||++++|
T Consensus 79 ~~~q~~~~~~~tv~~~i-----------------------------------------~~~LS~G~~qrv~laral~~~p 117 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL-----------------------------------------GRRFSGGERQRLALARILLQDA 117 (178)
T ss_pred EEccCCeeecccHHHhh-----------------------------------------cccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 5789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEec
Q 003981 698 PILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELG 758 (782)
Q Consensus 698 ~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~G 758 (782)
++|||||||++||+.+++.+.+.|+++.+++|+|++||++..+..||++++|++|++++.|
T Consensus 118 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 118 PIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999887789999999999999999999999999999865
No 178
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-44 Score=377.91 Aligned_cols=220 Identities=26% Similarity=0.430 Sum_probs=190.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCC--CCCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLR--TFDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~--~i~~ 609 (782)
.|+++||+++|+ +.++|+|+||+|++||++||+|++|||||||+++|+|++. |++|+|.+||.++. ..+.
T Consensus 10 ~l~i~~v~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYG---SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEEC---CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 489999999996 3479999999999999999999999999999999999986 48999999999985 3456
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC---CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV---SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQR 686 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~---s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQR 686 (782)
..+|++|+||+|++.+|+.|++|||.++...... .++++.++++.+++.+++.. .......+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 6788999999999999999999999986321111 23455667777777655532 3456678899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEe---------CCEEEE
Q 003981 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCS---------DGRIAE 756 (782)
Q Consensus 687 IaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd---------~G~Ive 756 (782)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999999887899999999999875 599999999 899999
Q ss_pred ecCHHHHHhc
Q 003981 757 LGTHFELLAR 766 (782)
Q Consensus 757 ~Gth~eLl~~ 766 (782)
.|+++|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999764
No 179
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.8e-44 Score=369.59 Aligned_cols=203 Identities=33% Similarity=0.509 Sum_probs=177.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChH---hhhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWAR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~---~lR~ 614 (782)
|+++|++++|+. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 35799999999999999999999999999999999999999999999999999887643 4788
Q ss_pred ceEEEcccCCCCc-ccHHHHHHcCCCC----CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 003981 615 VVSIVNQEPVLFS-VSVGENIAYGLPD----ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~-gTIreNI~~G~p~----~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
.++|++|++.+|. .|++||+.++... +...++++.++++..++.+++...| ..||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999996 6999999875211 1122456777888877776655443 4799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCE
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGR 753 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~ 753 (782)
||||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999875 48999999999999876 99999999985
No 180
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-44 Score=373.51 Aligned_cols=218 Identities=26% Similarity=0.403 Sum_probs=182.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh-hhhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~ 615 (782)
-|+++||+++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++|.++.+.+... +++.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeC---CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 389999999996 347999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred eEEEcccCCCCcc-cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 616 VSIVNQEPVLFSV-SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 616 Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
++||+|++.+|.+ |++|||.++... .+.++..+.+ .+.+..++...++ .......||||||||++||||++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~--~~~~~~~~~~-----~~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFF--AERDQFQERI-----KWVYELFPRLHER-RIQRAGTMSGGEQQMLAIGRALM 153 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhc--cChhHHHHHH-----HHHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHHHHH
Confidence 9999999999985 999999986421 1222222221 1122222211122 23456789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHh
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
++|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|+|++.|+++++..
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999999998875 489999999999976 5599999999999999999999974
No 181
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-44 Score=395.24 Aligned_cols=202 Identities=33% Similarity=0.549 Sum_probs=178.3
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh----hhceEEEcccCCCCc-c
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW----ARVVSIVNQEPVLFS-V 628 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l----R~~Ia~V~Q~~~LF~-g 628 (782)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+++...+ |++|+||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998887654 468999999999996 5
Q ss_pred cHHHHHHcCCCCCCC----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 003981 629 SVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDE 704 (782)
Q Consensus 629 TIreNI~~G~p~~~~----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDE 704 (782)
|++|||.++...... .++++.++++..++.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999986311111 2356677888888877666555 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 705 ATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 705 aTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|||+||+.+.+.+++.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|++++++..
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999998874 4899999999999875 5999999999999999999999865
No 182
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=9.2e-44 Score=371.59 Aligned_cols=212 Identities=32% Similarity=0.479 Sum_probs=182.9
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++|+|+ +.++|+|+||+|.+||+++|+|++|||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~i~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEEC---CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 47899999997 3469999999999999999999999999999999999999999999999999987653 477899
Q ss_pred EEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|.+ |++||+.++.+....+ ++++.++++..++.++.. ....+|||||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999975 9999999864211111 334555555555544433 3346899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHh
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|+++|+++||||||++||..+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999998754 7999999999998765 99999999999999999999975
No 183
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=373.95 Aligned_cols=220 Identities=28% Similarity=0.416 Sum_probs=189.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCC--Ch
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTF--DK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~i--~~ 609 (782)
.|+++|++++|+ +.++|+|+||+|++||.++|+|++|||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEEC---CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 489999999996 34699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC-C----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-S----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~-s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
..+|+.++||+|++.+|+.|++||+.++...... + ++++.++++.+++.+.+. .........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 5678899999999999999999999976311111 1 234566777776654333 233456778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++||||++++|+|||||||||+||+.+.+.+.+.|+++.+++|+|+|||++..+.. ||+|++|++|+|++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999998
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 754
No 184
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=371.70 Aligned_cols=219 Identities=26% Similarity=0.419 Sum_probs=185.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh-hhhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~I 616 (782)
|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+... +|+.|
T Consensus 4 l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYK---GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 88999999996 347999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCC-CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPD-ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~-~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+||+|++.+|. .|++||+.++... ...+.++.. ..+.+++..+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 99999999998 5999999875311 112222211 1223444444 4555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+ ..||+|++|++|+|++.|++++++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 9999999999999999999999999998775 489999999999766 55999999999999999999998753
No 185
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-43 Score=379.26 Aligned_cols=216 Identities=33% Similarity=0.513 Sum_probs=184.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC--CChHhhhhc
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT--FDKSEWARV 615 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~--i~~~~lR~~ 615 (782)
|+++||+|+|+. ..++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|++||.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999962 3469999999999999999999999999999999999999999999999999852 234568899
Q ss_pred eEEEcccC--CCCcccHHHHHHcCCCCCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 003981 616 VSIVNQEP--VLFSVSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 616 Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
|+||+|++ .+|+.|++|||.++......+. +++.++++..++.++. ++ ....||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~----~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-------NK----PPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-------cC----ChhhCCHHHHHHHHH
Confidence 99999998 5789999999998632111222 3455666666665432 22 345799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|++++.|+.+++.+.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 4899999999999986 5999999999999999999998753
No 186
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=9.6e-44 Score=369.25 Aligned_cols=210 Identities=27% Similarity=0.383 Sum_probs=180.3
Q ss_pred cEEEEeeEEEcCCCCC-ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh---h
Q 003981 537 DICLEDVYFSYPLRPD-VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---W 612 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~-~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~---l 612 (782)
.|+++||+++|+++.. .++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974211 36999999999999999999999999999999999999999999999999998887654 2
Q ss_pred -hhceEEEcccCCCCcc-cHHHHHHcCCCCC----CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHH
Q 003981 613 -ARVVSIVNQEPVLFSV-SVGENIAYGLPDE----NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQR 686 (782)
Q Consensus 613 -R~~Ia~V~Q~~~LF~g-TIreNI~~G~p~~----~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQR 686 (782)
++.++|++|++.+|.+ |++|||.++.... ....+++.++++..++.+++...| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999999885 9999998742101 112345677777777766655443 4799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHhcCeEEEEeCCEEEEe
Q 003981 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRIAEL 757 (782)
Q Consensus 687 IaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~ 757 (782)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|+|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 7899999999999999999999999999874
No 187
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=374.93 Aligned_cols=221 Identities=24% Similarity=0.410 Sum_probs=184.9
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh-hhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~ 615 (782)
-|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 389999999996 3579999999999999999999999999999999999999999999999999988876665 456
Q ss_pred eEEEcccCCCCcc-cHHHHHHcCCCC-------------CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCCh
Q 003981 616 VSIVNQEPVLFSV-SVGENIAYGLPD-------------ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSG 681 (782)
Q Consensus 616 Ia~V~Q~~~LF~g-TIreNI~~G~p~-------------~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSG 681 (782)
++||+|++.+|.+ |++|||.++.-. +...+++ .++. ..+.++++.+ |++........+|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEAL--DRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHHH--HHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 9999999999985 999999986210 0000000 0000 1122333443 555566677789999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEec
Q 003981 682 GQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELG 758 (782)
Q Consensus 682 GQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~G 758 (782)
|||||++|||||+.+|+||||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.+ ||+|++|++|++++.|
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 999999999999999999999999999999999999999988753 7899999999999865 9999999999999999
Q ss_pred CHHHHHh
Q 003981 759 THFELLA 765 (782)
Q Consensus 759 th~eLl~ 765 (782)
+.+++..
T Consensus 237 ~~~~~~~ 243 (255)
T PRK11300 237 TPEEIRN 243 (255)
T ss_pred CHHHHhh
Confidence 9998864
No 188
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=7.6e-44 Score=385.20 Aligned_cols=215 Identities=28% Similarity=0.432 Sum_probs=184.9
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+++|+ +..+|+||||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 599999999996 357999999999999999999999999999999999999999999999999997755 4578999
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCCCHHHH----HHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENVSKDDI----IKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei----~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
|||||++.+|. .|++||+.|.......+..+. .++++.. .|++..++.++ +||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~----~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFA-------KLENKADAKVG----ELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCchHhcCchh----hCCHHHHHHHHHHH
Confidence 99999999986 699999986321112333333 3333333 34455666664 69999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||.++.+.. ||+|++|++|+|++.|+.+++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 47899999999999865 999999999999999999999765
No 189
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.2e-43 Score=367.12 Aligned_cols=206 Identities=28% Similarity=0.407 Sum_probs=175.7
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh---hhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---WAR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~---lR~ 614 (782)
|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 347999999999999999999999999999999999999999999999999998876544 688
Q ss_pred ceEEEcccCCC-CcccHHHHHHcCCCCCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 003981 615 VVSIVNQEPVL-FSVSVGENIAYGLPDENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 615 ~Ia~V~Q~~~L-F~gTIreNI~~G~p~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
.++||+|++.+ ++.|++|||.++......+++ ++.++++..++.+++. .....||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 99999999987 568999999986311122333 3445555555555433 3346899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEE
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAE 756 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive 756 (782)
|||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999874 47899999999999976 89999999999864
No 190
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-43 Score=378.52 Aligned_cols=221 Identities=27% Similarity=0.402 Sum_probs=187.5
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCCC--C
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRTF--D 608 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~~i--~ 608 (782)
..|+++||+|+|++ .++|+|+||+|++||+++|+|++|||||||+++|+|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999962 469999999999999999999999999999999999864 4999999999998653 3
Q ss_pred hHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC-C----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-S----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 609 ~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~-s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
...+|+.|+||+|++.+|+.|++|||.++...... + ++++.++++..++.+.+. .........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHH
Confidence 34678899999999999999999999986311111 1 234556666666543322 12345667899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHH
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~e 762 (782)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.. ||+|++|++|+|++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778899999999999865 99999999999999999999
Q ss_pred HHhc
Q 003981 763 LLAR 766 (782)
Q Consensus 763 Ll~~ 766 (782)
+.+.
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 9765
No 191
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-44 Score=370.54 Aligned_cols=213 Identities=36% Similarity=0.534 Sum_probs=187.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++|+|+ +.++++|+||+|++|++++|+|++|||||||+++|+|+++|++|+|+++|+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~---~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeC---CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 46899999996 3479999999999999999999999999999999999999999999999999987664 367899
Q ss_pred EEcccCCCCcc-cHHHHHHcCCCC----CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLPD----ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p~----~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|.+ |++||+.++... ....++++.++++..++.+++...| ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 999999875211 1112456677777778877766555 5899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
++++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|+++|++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999998764 8999999999999865 999999999999999999999764
No 192
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6.2e-44 Score=369.97 Aligned_cols=212 Identities=26% Similarity=0.409 Sum_probs=182.8
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++||++.|+ +.++++|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++..++...+++.+
T Consensus 7 ~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 489999999996 34699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcccCCCCcccHHHHHHcCCC-C-CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 617 SIVNQEPVLFSVSVGENIAYGLP-D-ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 617 a~V~Q~~~LF~gTIreNI~~G~p-~-~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+||+|++.+|+.|++||+.++.- . ....++++.++++..++. ++........||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999987410 0 011223344444444442 13345667889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHhcCeEEEEe-CCEEEEecCHH
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCS-DGRIAELGTHF 761 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~IiVLd-~G~Ive~Gth~ 761 (782)
++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.++.||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998753 789999999999999999999994 67778899996
No 193
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.1e-43 Score=368.56 Aligned_cols=214 Identities=35% Similarity=0.511 Sum_probs=175.1
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh---Hhhh
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK---SEWA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~---~~lR 613 (782)
|+++||+|+|+... +.++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996321 1369999999999999999999999999999999999999999999999999988774 5788
Q ss_pred hceEEEcccC--CCC-cccHHHHHHcCCCC--CCCCHHHHHHHHHHhcchhHHHhCCCCcc-ccccCCCCCCChhHHHHH
Q 003981 614 RVVSIVNQEP--VLF-SVSVGENIAYGLPD--ENVSKDDIIKAAKAANAHDFIISLPQGYD-TLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 614 ~~Ia~V~Q~~--~LF-~gTIreNI~~G~p~--~~~s~eei~~A~~~a~l~dfI~~LP~Gld-T~VGE~G~~LSGGQrQRI 687 (782)
+.++||+|++ .++ ..|++|||.++... ....+++..+++ ++.+..+ |++ ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999999 344 58999999864211 011122222111 1222222 332 344566688999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEec
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELG 758 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~G 758 (782)
+|||||+.+|+||||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+|++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998864 799999999999987 59999999999999865
No 194
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=374.76 Aligned_cols=204 Identities=34% Similarity=0.474 Sum_probs=180.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYG---ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 499999999996 347999999999999999999999999999999999999999999999998763 567889
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
+||+|++.+|. .|++|||.++.. ...++++.++++..++.++. .....+||||||||++|||||++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~--~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK--GQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc--chHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999997 699999998732 12356677777777776543 33457899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHH
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~ 761 (782)
+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999998874 3799999999999875 59999999999999998865
No 195
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=373.76 Aligned_cols=215 Identities=29% Similarity=0.440 Sum_probs=187.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|+ +.++|+|+||+|++|++++|+|++|||||||+++|+|+++|++|+|.++|.++..++...+++.++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLG---GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 78999999996 346999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEcccCCC-CcccHHHHHHcCCCCCCC----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVL-FSVSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~L-F~gTIreNI~~G~p~~~~----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
|++|++.+ +..|++||+.++...... .++++.++++..++.++.. .....||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99999988 678999999986321111 1334566666666655432 3456899999999999999
Q ss_pred hc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHH
Q 003981 693 LL------KNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 693 Ll------r~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eL 763 (782)
|+ .+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||.+..+. .||+|++|++|+|++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 4789999999999886 5999999999999999999998
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 653
No 196
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.1e-43 Score=375.27 Aligned_cols=214 Identities=29% Similarity=0.452 Sum_probs=186.3
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
++++|++|.|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.+++...+|+.++
T Consensus 2 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAG---GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 78999999996 357999999999999999999999999999999999999999999999999999998888888999
Q ss_pred EEcccCC-CCcccHHHHHHcCCC-C------C-CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 618 IVNQEPV-LFSVSVGENIAYGLP-D------E-NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 618 ~V~Q~~~-LF~gTIreNI~~G~p-~------~-~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
|++|++. .+..||+|||.++.. . + ...++++.++++..++.+.. ......||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHH
Confidence 9999985 467899999988631 0 0 01123456666666665432 2345689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|+|++.|+++|+..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999999999998753 78999999999999 4599999999999999999999865
No 197
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=379.32 Aligned_cols=219 Identities=27% Similarity=0.448 Sum_probs=183.4
Q ss_pred EEEEeeEEEcCCCC--CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCC----ChHh
Q 003981 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF----DKSE 611 (782)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i----~~~~ 611 (782)
|+++||+++|+... ..++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997321 24699999999999999999999999999999999999999999999999998653 3456
Q ss_pred hhhceEEEcccC--CCCcccHHHHHHcCCCCCCCCHHH----HHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 612 WARVVSIVNQEP--VLFSVSVGENIAYGLPDENVSKDD----IIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 612 lR~~Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~ee----i~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
.|+.|+||+|+| .+|+.|++|||.++......+.++ +.++++..++.. .........|||||||
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQMR 152 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHHH
Confidence 788999999998 688899999998763211223332 344444444421 1234456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eL 763 (782)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|++||++..+. .||+|++|++|+|++.|+++++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 4789999999999875 5999999999999999999988
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13641 233 FSD 235 (287)
T ss_pred hcC
Confidence 653
No 198
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-43 Score=378.04 Aligned_cols=215 Identities=28% Similarity=0.459 Sum_probs=183.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC--CCChHhhhhc
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR--TFDKSEWARV 615 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~--~i~~~~lR~~ 615 (782)
|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++. +.+...+|+.
T Consensus 2 l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 68999999996 346999999999999999999999999999999999999999999999999985 3445678889
Q ss_pred eEEEcccCC--CCcccHHHHHHcCCCCCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 003981 616 VSIVNQEPV--LFSVSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 616 Ia~V~Q~~~--LF~gTIreNI~~G~p~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
|+||+|++. +|..|+.||+.++......+. +++.++++..++.++. + .....||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-------H----QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-------c----CCchhCCHHHHHHHHH
Confidence 999999985 678899999987521111222 3345566666665542 2 2456899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998875 47899999999999854 999999999999999999988654
No 199
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.1e-44 Score=368.13 Aligned_cols=200 Identities=30% Similarity=0.469 Sum_probs=171.5
Q ss_pred EEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEE
Q 003981 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (782)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 618 (782)
+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.|+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36799999963 46999999999999999999999999999999999999999999999998764 47889999
Q ss_pred EcccCCC---CcccHHHHHHcCCCCC--------CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 619 VNQEPVL---FSVSVGENIAYGLPDE--------NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 619 V~Q~~~L---F~gTIreNI~~G~p~~--------~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
|+|++.+ |+.|++|||.++.... ...++++.++++..++.++... ...+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHH
Confidence 9999987 6789999999863210 0123456777777777665443 3457999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEec
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELG 758 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~G 758 (782)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++| |++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 67899999999999865 8999999986 66654
No 200
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=372.45 Aligned_cols=219 Identities=31% Similarity=0.474 Sum_probs=190.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CChH
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FDKS 610 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~~--i~~~ 610 (782)
++++||+++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+.+ |++|+|.+||.++.. .+..
T Consensus 4 l~~~~v~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 4 IEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEeEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 78999999996 3469999999999999999999999999999999999864 489999999999875 3466
Q ss_pred hhhhceEEEcccCCCCcccHHHHHHcCCCCCCC-C----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-S----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~-s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
.+|+.++||+|++.+|+.|++|||.++...... + ++++.++++.+++.+++.. .+...+..|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence 789999999999999999999999976311111 1 2446667778888766542 234567789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
|++|||||+++|+||||||||++||..+.+.+.+.|+++.+++|+|++||++..+.. ||+|++|++|+|++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999998766 8999999999999999999997
Q ss_pred hc
Q 003981 765 AR 766 (782)
Q Consensus 765 ~~ 766 (782)
..
T Consensus 234 ~~ 235 (250)
T PRK14266 234 IN 235 (250)
T ss_pred hC
Confidence 55
No 201
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=375.88 Aligned_cols=220 Identities=31% Similarity=0.486 Sum_probs=187.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--CCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--FDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~--i~~ 609 (782)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 4699999999999999999999999999999999999974 79999999999853 456
Q ss_pred HhhhhceEEEcccCCCCc-ccHHHHHHcCCCC-C----CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 610 SEWARVVSIVNQEPVLFS-VSVGENIAYGLPD-E----NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p~-~----~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
..+|+.|+||+|++.+|. .|++||+.++... . ...++++.++++..++.+++. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999997 5999999875211 0 111234556666666654332 23345667899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEe------CCEEEE
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCS------DGRIAE 756 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd------~G~Ive 756 (782)
|||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||++..+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999999877899999999999985 599999997 899999
Q ss_pred ecCHHHHHhc
Q 003981 757 LGTHFELLAR 766 (782)
Q Consensus 757 ~Gth~eLl~~ 766 (782)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999999754
No 202
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-43 Score=367.80 Aligned_cols=212 Identities=38% Similarity=0.589 Sum_probs=186.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|+. .+ .||||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 789999999962 22 499999999999999999999999999999999999999999999998876543 56899
Q ss_pred EEcccCCCCcc-cHHHHHHcCC-CC---CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFSV-SVGENIAYGL-PD---ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~-p~---~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|.+ |++|||.++. +. ....++++.++++..++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998752 11 1123456888898888888776665 3799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++....
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 9999999999999999999999999999988753 7899999999999865 9999999999999999999998654
No 203
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-43 Score=375.56 Aligned_cols=222 Identities=29% Similarity=0.435 Sum_probs=191.4
Q ss_pred cccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCC----
Q 003981 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLR---- 605 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~---- 605 (782)
.+.|+++|++++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+.+| ++|+|+++|.++.
T Consensus 14 ~~~l~~~~l~~~~~---~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYG---GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEEC---CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 46799999999996 34799999999999999999999999999999999999975 7999999998874
Q ss_pred CCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCC-----CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCC
Q 003981 606 TFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE-----NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLS 680 (782)
Q Consensus 606 ~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~-----~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LS 680 (782)
..+...+|+.|+|++|++.+|.+|++|||.++.... ...++++.++++.+++.+. +.+.+......||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCcccCC
Confidence 334567889999999999999999999998762111 1123566677766665443 3345566778999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecC
Q 003981 681 GGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGT 759 (782)
Q Consensus 681 GGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gt 759 (782)
||||||++|||||+++|++|||||||++||..+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999999877889999999999986 599999999999999999
Q ss_pred HHHHHhc
Q 003981 760 HFELLAR 766 (782)
Q Consensus 760 h~eLl~~ 766 (782)
++++...
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9999753
No 204
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=375.73 Aligned_cols=220 Identities=28% Similarity=0.446 Sum_probs=189.9
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--CCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--FDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~--i~~ 609 (782)
.|+++||+++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++| ++|+|.+||+++.+ .+.
T Consensus 7 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYN---TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEEC---CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 599999999996 34699999999999999999999999999999999999985 48999999999864 455
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCC----CCCC-HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPD----ENVS-KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~----~~~s-~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
..+|+.|+||+|++.+|+.|++|||.++... ++.. ++.+.++++.+++.+++.. ........||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 6788999999999999999999999875211 1111 2345677777777655432 23456778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEe-----CCEEEEec
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCS-----DGRIAELG 758 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd-----~G~Ive~G 758 (782)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+.. ||+|++|+ +|+|++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999998778999999999999865 99999998 59999999
Q ss_pred CHHHHHhc
Q 003981 759 THFELLAR 766 (782)
Q Consensus 759 th~eLl~~ 766 (782)
+++|+.+.
T Consensus 237 ~~~~~~~~ 244 (259)
T PRK14260 237 VTTQIFSN 244 (259)
T ss_pred CHHHHhcC
Confidence 99999754
No 205
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-43 Score=384.99 Aligned_cols=225 Identities=32% Similarity=0.476 Sum_probs=187.7
Q ss_pred EEEEeeEEEcCCCC-------CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChH
Q 003981 538 ICLEDVYFSYPLRP-------DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS 610 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-------~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~ 610 (782)
|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.|+.+++..
T Consensus 6 l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~ 85 (327)
T PRK11308 6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPE 85 (327)
T ss_pred EEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHH
Confidence 89999999997321 24699999999999999999999999999999999999999999999999999888754
Q ss_pred ---hhhhceEEEcccCC--CCc-ccHHHHHHcCC-----CCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCC
Q 003981 611 ---EWARVVSIVNQEPV--LFS-VSVGENIAYGL-----PDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLL 679 (782)
Q Consensus 611 ---~lR~~Ia~V~Q~~~--LF~-gTIreNI~~G~-----p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~L 679 (782)
.+|++|+||+|+|. |+. -||.+|+.... .......+++.++++.+++.+ ++++. ....|
T Consensus 86 ~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~----~p~~L 155 (327)
T PRK11308 86 AQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDR----YPHMF 155 (327)
T ss_pred HHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcC----CCccC
Confidence 56789999999994 554 59999986421 011112345667777776642 23333 34679
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEE
Q 003981 680 SGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAE 756 (782)
Q Consensus 680 SGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive 756 (782)
|||||||++|||||+.+|+|||+||||++||..+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive 235 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE 235 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988754 8899999999999975 99999999999999
Q ss_pred ecCHHHHHhcc-CchHH
Q 003981 757 LGTHFELLARK-GQYAS 772 (782)
Q Consensus 757 ~Gth~eLl~~~-g~Y~~ 772 (782)
.|+.+++++.. ..|.+
T Consensus 236 ~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 236 KGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred ECCHHHHhcCCCCHHHH
Confidence 99999998753 33543
No 206
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-43 Score=363.29 Aligned_cols=203 Identities=35% Similarity=0.553 Sum_probs=176.9
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|++ .. .|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 578999999963 22 39999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEcccCCCCcc-cHHHHHHcCCC-C---CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLP-D---ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p-~---~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|.+ |++||+.++.. . ...+++++.++++..++.++....| ..||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999987632 1 0123456778888888877666554 4799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEec
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELG 758 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~G 758 (782)
++++|++|||||||++||.++++.+.+.|+++. .++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 37899999999999865 9999999999999865
No 207
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-44 Score=367.19 Aligned_cols=215 Identities=33% Similarity=0.528 Sum_probs=187.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCe---eCCCCChHhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE---DLRTFDKSEWA 613 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~---di~~i~~~~lR 613 (782)
.|+++|++..|+ ..++++||||+|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.++. ..-.
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 378899999996 457899999999999999999999999999999999999999999999999 66553 3445
Q ss_pred hceEEEcccCCCC-cccHHHHHHcCC------CCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHH
Q 003981 614 RVVSIVNQEPVLF-SVSVGENIAYGL------PDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQR 686 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF-~gTIreNI~~G~------p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQR 686 (782)
++||+|+|+.-|| +.||+|||+||. |.+...+.++.+-++.+++.++-.+-| ..||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 7899999999998 699999999996 333334567777788888887766555 6799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHH
Q 003981 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 687 IaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eL 763 (782)
+||||||...|++|+||||.+|||+.-.+.++.-|++.. -+.|+++|||..... +-||+|+||++|+|.+.|+.+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999988888887764 278999999998765 66999999999999999999999
Q ss_pred Hhcc
Q 003981 764 LARK 767 (782)
Q Consensus 764 l~~~ 767 (782)
....
T Consensus 226 ~~~P 229 (345)
T COG1118 226 YDHP 229 (345)
T ss_pred hcCC
Confidence 7653
No 208
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-43 Score=376.76 Aligned_cols=221 Identities=27% Similarity=0.454 Sum_probs=189.6
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCC--CC
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FD 608 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~~--i~ 608 (782)
..|+++||+++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~---~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEEC---CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 3589999999996 3479999999999999999999999999999999999997 689999999999864 34
Q ss_pred hHhhhhceEEEcccCCCCcccHHHHHHcCCCC---CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPD---ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 609 ~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~---~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
...+|+.++||+|++.+|..|++|||.++... +...++++.++++..++...+. ..+..+...|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 56788999999999999999999999875211 1112456677777776654332 1335667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEE-EEeCCEEEEecCHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIA-LCSDGRIAELGTHFEL 763 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~Ii-VLd~G~Ive~Gth~eL 763 (782)
|++|||||+++|+||||||||++||..+.+.+.+.|+++.+++|+|+|||++..+.. ||+|+ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999865 99975 5799999999999998
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
.+.
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 764
No 209
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-43 Score=385.16 Aligned_cols=227 Identities=23% Similarity=0.369 Sum_probs=186.6
Q ss_pred EEEEeeEEEcCCCCC-ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC----CCccEEEECCeeCCCCChHhh
Q 003981 538 ICLEDVYFSYPLRPD-VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE----PTGGRITVGGEDLRTFDKSEW 612 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~-~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~----p~~G~I~idG~di~~i~~~~l 612 (782)
++++||+++|+.+.. ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||+|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999974321 469999999999999999999999999999999999998 489999999999999987776
Q ss_pred hh----ceEEEcccCC--CCc-ccHHHHH----HcCC-CCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCC
Q 003981 613 AR----VVSIVNQEPV--LFS-VSVGENI----AYGL-PDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLS 680 (782)
Q Consensus 613 R~----~Ia~V~Q~~~--LF~-gTIreNI----~~G~-p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LS 680 (782)
++ .|+||+|++. ++. -|+.+|+ .... ......++++.++++..++.+.. .........||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 54 6999999995 332 3666555 3221 01111235567777777776532 12345667899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEe
Q 003981 681 GGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAEL 757 (782)
Q Consensus 681 GGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~ 757 (782)
||||||++|||||+.+|++||+|||||+||..++..|.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998853 789999999999985 5999999999999999
Q ss_pred cCHHHHHhcc-CchHH
Q 003981 758 GTHFELLARK-GQYAS 772 (782)
Q Consensus 758 Gth~eLl~~~-g~Y~~ 772 (782)
|+.+++.+.. ..|.+
T Consensus 236 g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CCHHHHhhCCCChHHH
Confidence 9999998753 34543
No 210
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=375.13 Aligned_cols=215 Identities=27% Similarity=0.446 Sum_probs=189.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+++|+ +..+|+|+||++++||+++|+|++|||||||+++|+|+++|++|+|.+||.++..++...+++.|
T Consensus 7 ~l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYG---KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEEC---CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 599999999997 34699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEcccCCCCc-ccHHHHHHcCC-CCC-------CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGL-PDE-------NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~-p~~-------~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
+||+|++.+|. .|++||+.++. +.. +..++++.++++..++.++.. .....||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHHH
Confidence 99999999875 79999998762 110 112345667777777765433 34578999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
+||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|+|++.|+.+++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999997755 9999999999999999999986
Q ss_pred h
Q 003981 765 A 765 (782)
Q Consensus 765 ~ 765 (782)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
No 211
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.1e-43 Score=381.92 Aligned_cols=219 Identities=32% Similarity=0.447 Sum_probs=182.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+++|+ +.++|+||||+|++|+++||+||+|||||||+++|+|+++|++|+|.++|.++... ...+|+.|
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 389999999996 34699999999999999999999999999999999999999999999999998764 35678999
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
+||+|++.+|. .|++||+.+.......+.++..+.++. +.+. ..|++..++.+ ..||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~l~~~~~~~~----~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADVRV----ALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-CCChhHhcCch----hhCCHHHHHHHHHHHHHhc
Confidence 99999999985 799999985311111333333322211 1121 13444445544 5699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 48899999999999865 999999999999999999999764
No 212
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-43 Score=379.58 Aligned_cols=221 Identities=27% Similarity=0.455 Sum_probs=189.9
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CCccEEEECCeeCCCC--C
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRTF--D 608 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-----p~~G~I~idG~di~~i--~ 608 (782)
..|+++||+++|++ .++|+|+||+|++||+++|+|++|||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 45999999999963 469999999999999999999999999999999999986 6899999999998653 4
Q ss_pred hHhhhhceEEEcccCCCCcccHHHHHHcCCCCC-----------------CCCHHHHHHHHHHhcchhHHHhCCCCcccc
Q 003981 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE-----------------NVSKDDIIKAAKAANAHDFIISLPQGYDTL 671 (782)
Q Consensus 609 ~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~-----------------~~s~eei~~A~~~a~l~dfI~~LP~GldT~ 671 (782)
...+|+.|+||+|++.+|++||+|||.++.... ...++++.++++.+++. +++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW-------DEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc-------hhhhHH
Confidence 567889999999999999999999999863110 01133455555555543 344556
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeE-EEE
Q 003981 672 VGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQI-ALC 749 (782)
Q Consensus 672 VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~I-iVL 749 (782)
+.....+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 67788999999999999999999999999999999999999999999999998878999999999999865 9997 578
Q ss_pred eCCEEEEecCHHHHHhc
Q 003981 750 SDGRIAELGTHFELLAR 766 (782)
Q Consensus 750 d~G~Ive~Gth~eLl~~ 766 (782)
++|+|++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999999754
No 213
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.5e-43 Score=384.48 Aligned_cols=228 Identities=28% Similarity=0.443 Sum_probs=187.5
Q ss_pred cEEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCCChHhh
Q 003981 537 DICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRTFDKSEW 612 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~---~G~I~idG~di~~i~~~~l 612 (782)
-++++|+++.|+.+. ...+++||||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996321 346999999999999999999999999999999999999996 9999999999999988776
Q ss_pred h----hceEEEcccC--CCCc-ccHHHHHHcCCC-CCCCCHHH----HHHHHHHhcchhHHHhCCCCccccccCCCCCCC
Q 003981 613 A----RVVSIVNQEP--VLFS-VSVGENIAYGLP-DENVSKDD----IIKAAKAANAHDFIISLPQGYDTLVGERGGLLS 680 (782)
Q Consensus 613 R----~~Ia~V~Q~~--~LF~-gTIreNI~~G~p-~~~~s~ee----i~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LS 680 (782)
| +.|+||+|++ .++. -|+.+||..... ....+.++ +.++++.+ .||++++ .++.....||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~v-------gL~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAV-------KMPEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------CCCChHH-HhcCCcccCC
Confidence 4 4799999998 4544 688888753210 01123333 23333332 3555443 3567788999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEe
Q 003981 681 GGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAEL 757 (782)
Q Consensus 681 GGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~ 757 (782)
||||||++|||||+.+|+|||+|||||+||..+...|.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988864 789999999999986 5999999999999999
Q ss_pred cCHHHHHhcc-CchHH
Q 003981 758 GTHFELLARK-GQYAS 772 (782)
Q Consensus 758 Gth~eLl~~~-g~Y~~ 772 (782)
|+.+++.+.. ..|.+
T Consensus 244 g~~~~i~~~p~~pyt~ 259 (330)
T PRK09473 244 GNARDVFYQPSHPYSI 259 (330)
T ss_pred CCHHHHHhCCCCHHHH
Confidence 9999998753 34544
No 214
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.6e-43 Score=374.58 Aligned_cols=230 Identities=23% Similarity=0.392 Sum_probs=191.5
Q ss_pred cEEEEeeEEEcCCC------CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChH
Q 003981 537 DICLEDVYFSYPLR------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS 610 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~------~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~ 610 (782)
.|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999631 124799999999999999999999999999999999999999999999999999766666
Q ss_pred hhhhceEEEcccCC--CCc-ccHHHHHHcCCCC-----CCCCHHHHHHHHHHhcch-hHHHhCCCCccccccCCCCCCCh
Q 003981 611 EWARVVSIVNQEPV--LFS-VSVGENIAYGLPD-----ENVSKDDIIKAAKAANAH-DFIISLPQGYDTLVGERGGLLSG 681 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~--LF~-gTIreNI~~G~p~-----~~~s~eei~~A~~~a~l~-dfI~~LP~GldT~VGE~G~~LSG 681 (782)
..++.|+||+|++. ++. -|+.+|+.++... ....++++.++++..++. +.. + .....|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-------S----YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-------h----cCchhcCH
Confidence 66778999999985 444 4899999753110 011234567777777773 332 2 23357999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEec
Q 003981 682 GQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELG 758 (782)
Q Consensus 682 GQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~G 758 (782)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999986 9999999999999999
Q ss_pred CHHHHHhcc--CchHHHHHHh
Q 003981 759 THFELLARK--GQYASLVCTQ 777 (782)
Q Consensus 759 th~eLl~~~--g~Y~~L~~~q 777 (782)
+++++.+.. ..+++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 999998753 4567777643
No 215
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=372.27 Aligned_cols=219 Identities=32% Similarity=0.497 Sum_probs=184.4
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----ccEEEECCeeCCC--CChH
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT-----GGRITVGGEDLRT--FDKS 610 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~-----~G~I~idG~di~~--i~~~ 610 (782)
++++||+|+|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|+ +|+|.++|.++.+ .+..
T Consensus 5 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 5 LSAQDVNIYYG---DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEeeeEEEEC---CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 88999999996 357999999999999999999999999999999999999875 8999999999875 3455
Q ss_pred hhhhceEEEcccCCCCc-ccHHHHHHcCCCCCCC-CHHHHHHH----HHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 611 EWARVVSIVNQEPVLFS-VSVGENIAYGLPDENV-SKDDIIKA----AKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~-s~eei~~A----~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
.+|+.|+|++|++.+|. .|++||+.++...... .+++..+. ++..++.+. +++.+++ ...+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~----~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLKT----PATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhcC----CcccCCHHHH
Confidence 77889999999999998 5999999875321111 23333332 333333322 2333443 4568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++|||||+++|+||||||||++||..+.+.+.+.|+++.+++|+|++||+++.+.+ ||+|++|++|+|++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999875 999999999999999999999
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
+..
T Consensus 235 ~~~ 237 (252)
T PRK14272 235 FTN 237 (252)
T ss_pred HhC
Confidence 865
No 216
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-43 Score=372.28 Aligned_cols=219 Identities=28% Similarity=0.423 Sum_probs=191.8
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCC--ChH
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTF--DKS 610 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~i--~~~ 610 (782)
+.++++++.|. +.++|+|+||+|++||+++|+|++|||||||+++|+|+++| ++|+|++||+++... +..
T Consensus 9 ~~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 9 MDCKLDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred EEEEeEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 78999999995 35799999999999999999999999999999999999987 799999999998653 445
Q ss_pred hhhhceEEEcccCCCCcccHHHHHHcCCCC---CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPD---ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~---~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
.+|+.|+||+|++.+|+.|++|||.++... .....+++.++++.+++.+.+.. ..++...+||||||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 778899999999999999999999987311 11123567888888887665532 23567789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEe--------CCEEEEec
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCS--------DGRIAELG 758 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd--------~G~Ive~G 758 (782)
+|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+ +|+|++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999998778899999999998754 99999996 89999999
Q ss_pred CHHHHHhc
Q 003981 759 THFELLAR 766 (782)
Q Consensus 759 th~eLl~~ 766 (782)
+++++.+.
T Consensus 239 ~~~~~~~~ 246 (261)
T PRK14263 239 PTAQIFQN 246 (261)
T ss_pred CHHHHHhC
Confidence 99999864
No 217
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=372.35 Aligned_cols=228 Identities=26% Similarity=0.442 Sum_probs=191.8
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECC------eeCCCCChH
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG------EDLRTFDKS 610 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG------~di~~i~~~ 610 (782)
.|+++|++++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++| +++.+++..
T Consensus 10 ~i~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIN---DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecC---CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 499999999996 34799999999999999999999999999999999999999997666654 677777778
Q ss_pred hhhhceEEEcccCCCCcc-cHHHHHHcCCCCCCC-CH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 611 EWARVVSIVNQEPVLFSV-SVGENIAYGLPDENV-SK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~-s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
.+|+.++|++|++.+|.+ |++|||.++.+.... ++ +++.++++..++.+++. ......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 889999999999999975 999999976321111 22 23456666666654431 223456778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++||||++++|+++||||||++||..+++.+.+.|.++.+++|+|++||++..+ ..||++++|++|++++.|+++|+
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999987789999999999999 56999999999999999999999
Q ss_pred Hhcc-CchHHHH
Q 003981 764 LARK-GQYASLV 774 (782)
Q Consensus 764 l~~~-g~Y~~L~ 774 (782)
.+.. ..|.+.+
T Consensus 240 ~~~~~~~~~~~~ 251 (257)
T PRK14246 240 FTSPKNELTEKY 251 (257)
T ss_pred HhCCCcHHHHHH
Confidence 8653 3355443
No 218
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.9e-43 Score=389.47 Aligned_cols=217 Identities=29% Similarity=0.448 Sum_probs=183.5
Q ss_pred eeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCe----eCCCCChHhhh----
Q 003981 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE----DLRTFDKSEWA---- 613 (782)
Q Consensus 542 nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~----di~~i~~~~lR---- 613 (782)
++...|+ ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++..++...+|
T Consensus 29 ~~~~~~g---~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETG---LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhC---CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence 4455553 356899999999999999999999999999999999999999999999996 67777766553
Q ss_pred hceEEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
++|+||+|++.+|+ .|++|||.|+......+ .+++.++++..++.++....| ..||||||||++
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~ 174 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVG 174 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHH
Confidence 57999999999997 79999999873211122 245677788887776644433 469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||+.+|+|||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|+|++.|+++|++.
T Consensus 175 LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 175 LARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999988754 79999999999987 5699999999999999999999986
Q ss_pred cc-CchHH
Q 003981 766 RK-GQYAS 772 (782)
Q Consensus 766 ~~-g~Y~~ 772 (782)
+. ..|.+
T Consensus 255 ~p~~~~~~ 262 (382)
T TIGR03415 255 NPANDYVA 262 (382)
T ss_pred CcchHHHH
Confidence 53 44443
No 219
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.3e-43 Score=364.29 Aligned_cols=203 Identities=33% Similarity=0.483 Sum_probs=171.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC--CChHhhhhc
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT--FDKSEWARV 615 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~--i~~~~lR~~ 615 (782)
|+++||+++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. .+...+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999963 469999999999999999999999999999999999999999999999999853 455678899
Q ss_pred eEEEcccCCCCc-ccHHHHHHcCCC-CCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 003981 616 VSIVNQEPVLFS-VSVGENIAYGLP-DENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 616 Ia~V~Q~~~LF~-gTIreNI~~G~p-~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
|+||+|++.+|. .|++||+.++.. ....+.+ ++.++++..++. ..+......||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-----------DKADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------hHhhhCccccCHHHHHHHHH
Confidence 999999999996 699999987621 0112222 333444444443 33344457899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEE
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRI 754 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~I 754 (782)
|||++++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|+|
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 47899999999999965 999999999985
No 220
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.7e-43 Score=351.78 Aligned_cols=172 Identities=41% Similarity=0.679 Sum_probs=163.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|++. ..++++|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++.+++...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999742 346999999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA 697 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p 697 (782)
||+|++.+|++|++||+ ||||||||++||||++++|
T Consensus 80 ~~~q~~~~~~~tv~~~l--------------------------------------------LS~G~~qrv~la~al~~~p 115 (173)
T cd03246 80 YLPQDDELFSGSIAENI--------------------------------------------LSGGQRQRLGLARALYGNP 115 (173)
T ss_pred EECCCCccccCcHHHHC--------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEEeCCEE
Q 003981 698 PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALCSDGRI 754 (782)
Q Consensus 698 ~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~G~I 754 (782)
++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+..||+|++|++|+|
T Consensus 116 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 116 RILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999999998875 47899999999999999999999999975
No 221
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-43 Score=363.85 Aligned_cols=203 Identities=23% Similarity=0.418 Sum_probs=172.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|+++.|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.. .+|+.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 47899999996 3479999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
|++|++.+|.+ |++||+.++......+ ++++.++++..++. ........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-----------EYANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-----------HHHhCcHhhCCHHHHHHHHHHHH
Confidence 99999999975 9999998752111111 23344444444443 33345567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEec
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELG 758 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~G 758 (782)
++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999998875 47899999999998865 9999999999999865
No 222
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.5e-43 Score=379.72 Aligned_cols=214 Identities=23% Similarity=0.372 Sum_probs=185.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
++++|++++|+ +..+|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.++|.++.. +...+|+.++
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 78999999996 3579999999999999999999999999999999999999999999999999977 4567889999
Q ss_pred EEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
|++|++.+|.+ |++||+.+.......+ .+++.++++..++. ........+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-----------PEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCchhhCCHHHHHHHHHHHH
Confidence 99999999976 9999998642111122 23344444444443 33345567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998888999999999998866 999999999999999999999765
No 223
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-43 Score=371.33 Aligned_cols=221 Identities=30% Similarity=0.460 Sum_probs=189.8
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----ccEEEECCeeCCC--CC
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT-----GGRITVGGEDLRT--FD 608 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~-----~G~I~idG~di~~--i~ 608 (782)
+.|+++||+|+|++ ..+|+|+||+|++||.+||+|++|||||||+++|+|+++|+ +|+|.++|+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 36999999999999999999999999999999999999985 8999999999853 35
Q ss_pred hHhhhhceEEEcccCCCCcccHHHHHHcCCCC----CCCC-HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPD----ENVS-KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 609 ~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~----~~~s-~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
...+|+.++|++|++.+|..|++||+.++... +... ++++.++++..++.+++.. ..+.....|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 56788999999999999999999999875211 1111 2345667777777655442 3456778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHH-hcCeEEEEeC-----CEEE
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQ-NAHQIALCSD-----GRIA 755 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~-~aD~IiVLd~-----G~Iv 755 (782)
|||++|||||+++|++|||||||++||..+.+.+.+.|+++. .++|+|+|||++..+. .||+|++|++ |+|+
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998864 4899999999999986 4999999999 9999
Q ss_pred EecCHHHHHhc
Q 003981 756 ELGTHFELLAR 766 (782)
Q Consensus 756 e~Gth~eLl~~ 766 (782)
+.|+++++...
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999764
No 224
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.1e-43 Score=368.81 Aligned_cols=215 Identities=27% Similarity=0.355 Sum_probs=177.3
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCCChHhh-hh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--YEPTGGRITVGGEDLRTFDKSEW-AR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl--y~p~~G~I~idG~di~~i~~~~l-R~ 614 (782)
|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.++..++.... +.
T Consensus 1 l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVE---DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEEC---CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 47899999996 34799999999999999999999999999999999999 47999999999999988887665 44
Q ss_pred ceEEEcccCCCCcc-cHHHHHHcCCCC-C------CCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChh
Q 003981 615 VVSIVNQEPVLFSV-SVGENIAYGLPD-E------NVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGG 682 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~g-TIreNI~~G~p~-~------~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGG 682 (782)
.++||+|++.+|.+ |++||+.+.... . ..+ ++++.++++..++.+.. .+..++ ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHH
Confidence 59999999999975 899999764210 0 011 12344444444443211 122221 259999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh--cCeEEEEeCCEEEEecC
Q 003981 683 QRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN--AHQIALCSDGRIAELGT 759 (782)
Q Consensus 683 QrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~--aD~IiVLd~G~Ive~Gt 759 (782)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999875 47899999999999976 79999999999999999
Q ss_pred HHHHH
Q 003981 760 HFELL 764 (782)
Q Consensus 760 h~eLl 764 (782)
+++..
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 98654
No 225
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-43 Score=370.57 Aligned_cols=220 Identities=30% Similarity=0.472 Sum_probs=186.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--C---CccEEEECCeeCCC--CCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE--P---TGGRITVGGEDLRT--FDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~--p---~~G~I~idG~di~~--i~~ 609 (782)
-|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYG---KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEEC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 389999999996 3479999999999999999999999999999999999975 5 59999999999864 345
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC-----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~-----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
..+++.++||+|++.+|+.|++||+.++...... .++++.++++.+++.+.+ ..........||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 5678899999999999999999999875211111 123455556666554332 2334556778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
||++|||||+++|+||||||||++||..+++.+.+.|+++.+++|+|+|||++..+.. ||+|++|++|+|++.|+.++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999864 999999999999999999888
Q ss_pred Hhc
Q 003981 764 LAR 766 (782)
Q Consensus 764 l~~ 766 (782)
...
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 765
No 226
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-43 Score=365.00 Aligned_cols=212 Identities=30% Similarity=0.517 Sum_probs=184.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|+. .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 468999999962 37999999999999999999999999999999999999999999999999987654 368899
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCCCCC----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~~~~----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|. .|++||+.++...... .++++.++++..++.+++.+. ...||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK-----------PETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcC-----------cccCCHHHHHHHHHHHH
Confidence 9999999995 7999999976422112 234456677777776655443 35799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
++++|++++|||||++||..+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999998754 8999999999999875 999999999999999999999865
No 227
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=6e-43 Score=359.55 Aligned_cols=203 Identities=37% Similarity=0.630 Sum_probs=178.0
Q ss_pred EEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEE
Q 003981 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (782)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 618 (782)
+++||+++|+. .++|+||++++||.++|+|++|||||||+++|+|+++|++|+|.+||+++.+.+ .+|+.++|
T Consensus 2 ~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 2 ALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred eEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 68999999961 468999999999999999999999999999999999999999999999987654 46788999
Q ss_pred EcccCCCCc-ccHHHHHHcCC-CC---CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 619 VNQEPVLFS-VSVGENIAYGL-PD---ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 619 V~Q~~~LF~-gTIreNI~~G~-p~---~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
|+|++.+|. .|++||+.++. +. +...++++.++++..++.+...+.|. .||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHHH
Confidence 999999997 49999998752 11 11234567778888888777666553 7999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecC
Q 003981 694 LKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGT 759 (782)
Q Consensus 694 lr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gt 759 (782)
+++|+|+||||||++||.++.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+|++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998753 7899999999998865 99999999999999874
No 228
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=6e-43 Score=382.36 Aligned_cols=219 Identities=31% Similarity=0.432 Sum_probs=184.9
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++||+++|+ +..+|+||||+|++|+.+||+||+|||||||+++|+|+++|++|+|.++|+++.+.+ ..+|+.|
T Consensus 41 ~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 499999999996 347999999999999999999999999999999999999999999999999997654 5688999
Q ss_pred EEEcccCCCC-cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 617 SIVNQEPVLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 617 a~V~Q~~~LF-~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
+||||++.+| ..|++||+.+.......+.++..+.++. +.++ ..|++..++.+ .+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~L~~~~~~~~----~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADARV----SDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-cCCchhhCCCh----hhCCHHHHHHHHHHHHHhc
Confidence 9999999986 5799999986321111233333322211 1121 24555566666 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||.++.+.. ||+|++|++|+|++.|+.+++.+.
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999875 48999999999999865 999999999999999999999764
No 229
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=371.04 Aligned_cols=220 Identities=26% Similarity=0.411 Sum_probs=189.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCC--CCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--FDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~--i~~ 609 (782)
.|+++||+++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++| ++|+|.++|+++.+ .+.
T Consensus 20 ~l~~~nl~~~~~---~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYG---GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeC---CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 599999999996 34699999999999999999999999999999999999864 69999999999864 345
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCC---CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDE---NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQR 686 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~---~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQR 686 (782)
..+|+.|+||+|++.+|+.|++|||.++.... ...++++.++++.+++.+++.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 56789999999999999999999999863110 0123456667777777654432 2345677899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEe---------CCEEEE
Q 003981 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCS---------DGRIAE 756 (782)
Q Consensus 687 IaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd---------~G~Ive 756 (782)
++|||||+++|+||||||||++||..+...+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|+|++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999999877899999999999885 599999998 899999
Q ss_pred ecCHHHHHhc
Q 003981 757 LGTHFELLAR 766 (782)
Q Consensus 757 ~Gth~eLl~~ 766 (782)
.|+.+|+...
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999999764
No 230
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=9.3e-43 Score=368.64 Aligned_cols=227 Identities=26% Similarity=0.386 Sum_probs=185.4
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCee-----CCCCChHh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED-----LRTFDKSE 611 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~d-----i~~i~~~~ 611 (782)
-|+++||+++|++ .++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++|.+ +.+++...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999963 469999999999999999999999999999999999999999999999998 87776655
Q ss_pred ----hhhceEEEcccCC--CC-cccHHHHHHcCCC-CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 612 ----WARVVSIVNQEPV--LF-SVSVGENIAYGLP-DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 612 ----lR~~Ia~V~Q~~~--LF-~gTIreNI~~G~p-~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
+++.++||+|++. ++ ..|+.|||.+..- ....+.+++.+ .+++++..++-+ ++.....+..|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3567999999984 33 3589999875310 00111222221 124455555322 245667788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCH
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTH 760 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth 760 (782)
|||++|||||+++|+||||||||++||+.+++.+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988754 789999999999997 5999999999999999999
Q ss_pred HHHHhcc-CchHH
Q 003981 761 FELLARK-GQYAS 772 (782)
Q Consensus 761 ~eLl~~~-g~Y~~ 772 (782)
+++..+. ..|.+
T Consensus 237 ~~~~~~~~~~~~~ 249 (258)
T PRK11701 237 DQVLDDPQHPYTQ 249 (258)
T ss_pred HHHhcCCCCHHHH
Confidence 9997653 33544
No 231
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=5.7e-43 Score=372.13 Aligned_cols=230 Identities=30% Similarity=0.461 Sum_probs=189.0
Q ss_pred EEEEeeEEEcCCC------CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh--
Q 003981 538 ICLEDVYFSYPLR------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-- 609 (782)
Q Consensus 538 I~f~nVsF~Y~~~------~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~-- 609 (782)
|+++||+|+|+.. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8899999999731 13579999999999999999999999999999999999999999999999999988765
Q ss_pred -HhhhhceEEEcccCC--CC-cccHHHHHHcCCCC-CCCCHHHHHHHHHHhcchhHHHhCCCCccc-cccCCCCCCChhH
Q 003981 610 -SEWARVVSIVNQEPV--LF-SVSVGENIAYGLPD-ENVSKDDIIKAAKAANAHDFIISLPQGYDT-LVGERGGLLSGGQ 683 (782)
Q Consensus 610 -~~lR~~Ia~V~Q~~~--LF-~gTIreNI~~G~p~-~~~s~eei~~A~~~a~l~dfI~~LP~GldT-~VGE~G~~LSGGQ 683 (782)
..+|+.++||+|++. ++ ..|++||+.++... ...+.++ ....+++.+..+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 357889999999983 43 47999999753100 0111111 112233444443 5653 4566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCH
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTH 760 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth 760 (782)
|||++|||||+.+|+||||||||++||..+++.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999998753 7899999999999975 999999999999999999
Q ss_pred HHHHhccCchHHHH
Q 003981 761 FELLARKGQYASLV 774 (782)
Q Consensus 761 ~eLl~~~g~Y~~L~ 774 (782)
+|+....+.|..-+
T Consensus 237 ~~~~~~~~~~~~~~ 250 (268)
T PRK10419 237 GDKLTFSSPAGRVL 250 (268)
T ss_pred hhccCCCCHHHHHH
Confidence 99987666664433
No 232
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=369.06 Aligned_cols=225 Identities=27% Similarity=0.395 Sum_probs=187.8
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCC-----C
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRTF-----D 608 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~---~G~I~idG~di~~i-----~ 608 (782)
-|+++||+++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFN---QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeC---CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 389999999996 357999999999999999999999999999999999999986 49999999998654 3
Q ss_pred hHhhhhceEEEcccCCCCc-ccHHHHHHcCCCC------------CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCC
Q 003981 609 KSEWARVVSIVNQEPVLFS-VSVGENIAYGLPD------------ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGER 675 (782)
Q Consensus 609 ~~~lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p~------------~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~ 675 (782)
...+|+.++||+|++.+|. .|++||+.++..+ +...++++.++++..++.+++. ..
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-----------QR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----------CC
Confidence 4567889999999999987 5999999976321 0011234566666666654432 34
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCC
Q 003981 676 GGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDG 752 (782)
Q Consensus 676 G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G 752 (782)
...||||||||++|||||+.+|++|||||||++||..+.+.+.+.|+++.+ ++|+|+|||++..+ +.||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 567999999999999999999999999999999999999999999998863 79999999999976 569999999999
Q ss_pred EEEEecCHHHHHhccCchHHHHHHh
Q 003981 753 RIAELGTHFELLARKGQYASLVCTQ 777 (782)
Q Consensus 753 ~Ive~Gth~eLl~~~g~Y~~L~~~q 777 (782)
+|++.|+++++ ......++|...
T Consensus 230 ~i~~~g~~~~~--~~~~~~~~~~~~ 252 (262)
T PRK09984 230 HVFYDGSSQQF--DNERFDHLYRSI 252 (262)
T ss_pred EEEEeCCHHHh--ccHHHHHHHhhh
Confidence 99999999997 233455555443
No 233
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-43 Score=384.30 Aligned_cols=211 Identities=28% Similarity=0.439 Sum_probs=185.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCC----ChHhhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF----DKSEWA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i----~~~~lR 613 (782)
|++ |++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +...++
T Consensus 2 l~~-~l~k~~~~---~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 566 99999962 22 3 89999999999999999999999999999999999999999999998653 244578
Q ss_pred hceEEEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
++|+||+|++.+|. .|++|||.|+.. ...++++.++++..++.++..+.| .+||||||||++||||
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalara 142 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA--KSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRA 142 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh--hhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 89999999999996 699999999843 245677888888888776655443 6899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..+.
T Consensus 143 L~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 143 LLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999999988754 7899999999998755 9999999999999999999998653
No 234
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-43 Score=371.59 Aligned_cols=214 Identities=31% Similarity=0.447 Sum_probs=185.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--------ccEEEECCeeCCCCCh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT--------GGRITVGGEDLRTFDK 609 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~--------~G~I~idG~di~~i~~ 609 (782)
|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++..++.
T Consensus 2 l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARR---HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEEC---CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 78999999996 347999999999999999999999999999999999999998 9999999999998888
Q ss_pred HhhhhceEEEcccCC-CCcccHHHHHHcCC-CCC----CCC---HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCC
Q 003981 610 SEWARVVSIVNQEPV-LFSVSVGENIAYGL-PDE----NVS---KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLS 680 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~-LF~gTIreNI~~G~-p~~----~~s---~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LS 680 (782)
..+++.++||+|++. +|..|++|||.++. +.. ..+ ++.+.++++..+ +++.+......||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG-----------ATALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcC-----------cHhhhcCCcccCC
Confidence 888999999999986 67899999998863 110 011 123444444444 4445566778999
Q ss_pred hhHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEE
Q 003981 681 GGQRQRIAIARALL---------KNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIAL 748 (782)
Q Consensus 681 GGQrQRIaIARALl---------r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiV 748 (782)
||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998754 789999999999986 5999999
Q ss_pred EeCCEEEEecCHHHHHh
Q 003981 749 CSDGRIAELGTHFELLA 765 (782)
Q Consensus 749 Ld~G~Ive~Gth~eLl~ 765 (782)
|++|+|++.|+.++++.
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999865
No 235
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=379.09 Aligned_cols=227 Identities=25% Similarity=0.333 Sum_probs=188.2
Q ss_pred EEEEeeEEEcCCC-CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC----CCccEEEECCeeCCCCChHhh
Q 003981 538 ICLEDVYFSYPLR-PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE----PTGGRITVGGEDLRTFDKSEW 612 (782)
Q Consensus 538 I~f~nVsF~Y~~~-~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~----p~~G~I~idG~di~~i~~~~l 612 (782)
|+++|++++|+.+ ....+|+||||+|++||++||||+||||||||+++|+|+.+ |++|+|.+||+++.+++...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 7899999999642 13469999999999999999999999999999999999986 689999999999998887765
Q ss_pred h----hceEEEcccCCC--C-cccHHHHHHcCCC---C-----CC--CCHHHHHHHHHHhcchhHHHhCCCCccccccCC
Q 003981 613 A----RVVSIVNQEPVL--F-SVSVGENIAYGLP---D-----EN--VSKDDIIKAAKAANAHDFIISLPQGYDTLVGER 675 (782)
Q Consensus 613 R----~~Ia~V~Q~~~L--F-~gTIreNI~~G~p---~-----~~--~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~ 675 (782)
+ +.|+||+|++.. + ..||.+||..... . .+ ..++++.++++..++.+.-. .....
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhCC
Confidence 4 479999999973 3 3689999964210 0 00 11346677788887764211 11233
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCC
Q 003981 676 GGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDG 752 (782)
Q Consensus 676 G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G 752 (782)
...||||||||++|||||+.+|+|||||||||+||+.+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 468999999999999999999999999999999999999999999998764 7899999999999965 9999999999
Q ss_pred EEEEecCHHHHHhcc-CchHH
Q 003981 753 RIAELGTHFELLARK-GQYAS 772 (782)
Q Consensus 753 ~Ive~Gth~eLl~~~-g~Y~~ 772 (782)
+|+|.|+.+++.+.. ..|.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHH
Confidence 999999999998653 45654
No 236
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.2e-42 Score=359.12 Aligned_cols=206 Identities=28% Similarity=0.427 Sum_probs=176.6
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChH---hhh
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~---~lR 613 (782)
++++||++.|+... +..+|+|+||++++||.+||+|++|||||||+++|+|+++|++|+|.+||+++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996321 25799999999999999999999999999999999999999999999999999877754 468
Q ss_pred hceEEEcccCCCCc-ccHHHHHHcCCCC-CCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 614 RVVSIVNQEPVLFS-VSVGENIAYGLPD-ENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~-gTIreNI~~G~p~-~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
+.|+|++|++.+|. .|+.||+.++... +..+.+ ++.++++..++.+++.+. ..+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY-----------PHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHH
Confidence 89999999999998 7999999876321 112322 355555555555554444 358999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHhcCeEEEEeCCEE
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRI 754 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~IiVLd~G~I 754 (782)
+|||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|+|+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988763 7999999999998888999999999986
No 237
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=6.7e-43 Score=362.50 Aligned_cols=212 Identities=30% Similarity=0.418 Sum_probs=171.7
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC---CCccEEEECCeeCCCCChHhhh
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE---PTGGRITVGGEDLRTFDKSEWA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~---p~~G~I~idG~di~~i~~~~lR 613 (782)
++|+||+|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999998431 3689999999999999999999999999999999999999 99999999999875 35688
Q ss_pred hceEEEcccCCCCcc-cHHHHHHcCCCCC--CCCHHHHHHHHHHhcchhHHHhCCC-CccccccCCCCCCChhHHHHHHH
Q 003981 614 RVVSIVNQEPVLFSV-SVGENIAYGLPDE--NVSKDDIIKAAKAANAHDFIISLPQ-GYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~g-TIreNI~~G~p~~--~~s~eei~~A~~~a~l~dfI~~LP~-GldT~VGE~G~~LSGGQrQRIaI 689 (782)
+.|+||+|++.+|++ |++|||.++.... ....++... ...+++ .++. |++.........||||||||++|
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~----~~~~~~--~l~~~~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRK----KRVEDV--LLRDLALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHH----HHHHHH--HHHhhcchhhhcccccCcCHHHHHHHHH
Confidence 999999999999987 9999999752110 001111111 111110 1222 22233334567899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCh--hHHHhcCeEEEEeCCEEEEec
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRL--STVQNAHQIALCSDGRIAELG 758 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRL--sti~~aD~IiVLd~G~Ive~G 758 (782)
|||++++|+||||||||++||+.+.+.+.+.|+++. +++|+|++||++ .....||+|++|++|+|++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998875 478999999998 345679999999999999876
No 238
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.4e-42 Score=364.58 Aligned_cols=228 Identities=28% Similarity=0.373 Sum_probs=188.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC----CccEEEECCeeCCCCChHhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP----TGGRITVGGEDLRTFDKSEW 612 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p----~~G~I~idG~di~~i~~~~l 612 (782)
.|+++||+|+| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 3699999999999999999999999999999999999999 999999999998632 223
Q ss_pred hhceEEEcccCC-CCc--ccHHHHHHcCC--CCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 613 ARVVSIVNQEPV-LFS--VSVGENIAYGL--PDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 613 R~~Ia~V~Q~~~-LF~--gTIreNI~~G~--p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
++.|+||+|++. .|. .|+.+|+.+.. ......++++.++++..++.++ ++.+......||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 567999999985 454 58888875421 0112345667788877777543 2345666789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHH
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
+|||||+++|+||||||||++||..+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988753 789999999999986 59999999999999999999997
Q ss_pred hccC--chHHHHHHhh
Q 003981 765 ARKG--QYASLVCTQR 778 (782)
Q Consensus 765 ~~~g--~Y~~L~~~q~ 778 (782)
+... ..+.++..+.
T Consensus 230 ~~~~~~~~~~~~~~~~ 245 (254)
T PRK10418 230 NAPKHAVTRSLVSAHL 245 (254)
T ss_pred hCCCCHHHHHHHHhhh
Confidence 6532 3445665543
No 239
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.5e-42 Score=375.05 Aligned_cols=202 Identities=28% Similarity=0.421 Sum_probs=173.9
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcc-cHH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSV-SVG 631 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~g-TIr 631 (782)
.++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++.. ....+|++|+||+|++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 479999999999999999999999999999999999999999999999999876 446778999999999999975 999
Q ss_pred HHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 003981 632 ENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATS 707 (782)
Q Consensus 632 eNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTS 707 (782)
|||.+.......+ ++++.++++..++.+.. + ....+||||||||++|||||+.+|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------D----RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------C----CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9998742111122 23455556555554332 2 3446799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 708 ALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 708 ALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
+||+.+.+.+.+.|+++. +|+|+|++||+++.+.+ ||+|++|++|+|++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999875 47899999999999865 999999999999999999999765
No 240
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-42 Score=362.69 Aligned_cols=204 Identities=33% Similarity=0.437 Sum_probs=173.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 4699999999999999999999999999999999999999999999999988643 24599
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|. .|++||+.++......+ ++++.++++..++.+.. .....+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHH
Confidence 9999999987 69999998752111122 23455555555554432 33557899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEe--CCEEEEecCH
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCS--DGRIAELGTH 760 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd--~G~Ive~Gth 760 (782)
|+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|+ +|+|++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999999873 38999999999998855 99999998 5999998764
No 241
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.8e-42 Score=379.30 Aligned_cols=210 Identities=31% Similarity=0.448 Sum_probs=178.2
Q ss_pred eeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC----hHhhhhceE
Q 003981 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD----KSEWARVVS 617 (782)
Q Consensus 542 nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~----~~~lR~~Ia 617 (782)
|++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.|+
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999962 23 5 999999999999999999999999999999999999999999999987543 345788999
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCCCCC--CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPDENV--SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~~~~--s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
||+|++.+|. .|++|||.|+...... .++++.++++..++.++ .......||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL-----------LGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999997 4999999987432111 12235555555555443 33445789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++....
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999999999999999998754 7899999999998865 9999999999999999999998653
No 242
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-42 Score=351.25 Aligned_cols=190 Identities=24% Similarity=0.384 Sum_probs=165.0
Q ss_pred EEEEeeEEEcCCC-CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC---CCccEEEECCeeCCCCChHhhh
Q 003981 538 ICLEDVYFSYPLR-PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE---PTGGRITVGGEDLRTFDKSEWA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~-~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~---p~~G~I~idG~di~~i~~~~lR 613 (782)
+.++||+|.|+.+ .+.++|+|+||+|++||++||+|++|||||||+++|+|+++ |++|+|.+||.++...+ ...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 7899999999853 35689999999999999999999999999999999999999 89999999999998765 4578
Q ss_pred hceEEEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
+.++||+|++.+|. .|++|||.++.. .. ..+....||||||||++||||
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~---~~---------------------------~~~~~~~LS~Ge~qrl~lara 132 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALR---CK---------------------------GNEFVRGISGGERKRVSIAEA 132 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhh---hc---------------------------cccchhhCCHHHHHHHHHHHH
Confidence 89999999998887 599999987621 00 123446799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEec-ChhHH-HhcCeEEEEeCCEEEEec
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAH-RLSTV-QNAHQIALCSDGRIAELG 758 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaH-RLsti-~~aD~IiVLd~G~Ive~G 758 (782)
|+++|+||||||||++||+++++.+.+.|+++.+ ++|+|+++| .+..+ +.||+|++|++|+|++.|
T Consensus 133 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998764 467677655 45555 569999999999999865
No 243
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.4e-42 Score=356.49 Aligned_cols=207 Identities=26% Similarity=0.387 Sum_probs=179.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
++++||+++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFG---KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 46899999996 347999999999999999999999999999999999999999999999999875422 35799
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
|++|++.+|. .|++||+.++......+++++.++++..++.+.... ....||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 699999986521112346677778877777665332 3467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHH
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~e 762 (782)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+. .||+|++|++|+|++.|+.++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 4789999999999985 599999999999999998765
No 244
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-42 Score=340.86 Aligned_cols=170 Identities=35% Similarity=0.598 Sum_probs=158.3
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
++++||+++|++ .++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 468999999963 36999999999999999999999999999999999999999999999999998766 67788999
Q ss_pred EEcccCCCCcc-cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
||+|++.+|.+ |++||+. ||||||||++|||||+++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-------------------------------------------LS~G~~qrv~laral~~~ 113 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-------------------------------------------LSGGMKQRLALAQALLHD 113 (173)
T ss_pred EEecCCccccCCcHHHHhh-------------------------------------------cCHHHHHHHHHHHHHHcC
Confidence 99999999986 9999984 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEE
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRI 754 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~I 754 (782)
|+||||||||++||+.+.+.+.+.|+++. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 114 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 114 PELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999875 4689999999999887 5999999999974
No 245
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-42 Score=341.40 Aligned_cols=172 Identities=40% Similarity=0.637 Sum_probs=160.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC--hHhhhhc
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD--KSEWARV 615 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~--~~~lR~~ 615 (782)
|+++|++|+|+. .++++|+||++++||.++|+|++|||||||+++|+|+++|++|+|.++|.++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 478999999963 47999999999999999999999999999999999999999999999999998876 6678899
Q ss_pred eEEEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 616 VSIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 616 Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
++|++|++.+|. .|++||+.+. ||||||||++|||||+
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~-----------------------------------------lS~G~~qr~~la~al~ 116 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG-----------------------------------------LSGGQQQRVALARALA 116 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec-----------------------------------------CCHHHHHHHHHHHHHH
Confidence 999999999986 5999999753 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCE
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGR 753 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~ 753 (782)
++|+++||||||++||+.+...+.+.|+++.+ ++|+|++||++..+. .||+|++|++|+
T Consensus 117 ~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 117 MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999988765 689999999999998 499999999985
No 246
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-41 Score=338.06 Aligned_cols=171 Identities=54% Similarity=0.844 Sum_probs=162.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|++. ..++++|+||+|++|+.++|+||+|||||||+++|+|+++|++|+|.++|.++..++...+|+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4689999999742 236999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA 697 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p 697 (782)
|++|++.+|+.|++||+ ||||||||++||||++.+|
T Consensus 80 ~~~~~~~~~~~t~~e~l--------------------------------------------LS~G~~~rl~la~al~~~p 115 (171)
T cd03228 80 YVPQDPFLFSGTIRENI--------------------------------------------LSGGQRQRIAIARALLRDP 115 (171)
T ss_pred EEcCCchhccchHHHHh--------------------------------------------hCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCE
Q 003981 698 PILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGR 753 (782)
Q Consensus 698 ~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~ 753 (782)
++|||||||++||+.+.+.+.+.|+++.+++|+|++||++..+..||++++|++|+
T Consensus 116 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 116 PILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999999999999999877899999999999998899999999985
No 247
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-42 Score=351.15 Aligned_cols=203 Identities=32% Similarity=0.515 Sum_probs=169.8
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC----hHhhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD----KSEWA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~----~~~lR 613 (782)
+++ ||+++|++ ..+ |+||+|++ |+++|+|++|||||||+++|+|+++|++|+|.++|.++.+.+ ...+|
T Consensus 2 ~~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 2 LCV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred cee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 355 99999973 334 99999999 999999999999999999999999999999999999986432 34578
Q ss_pred hceEEEcccCCCCc-ccHHHHHHcCCCCC--CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDE--NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~--~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
+.++||+|++.+|. .|++|||.++.... ...++++.++++.. |++..+......||||||||++||
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la 143 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLL-----------GLDHLLNRYPAQLSGGEKQRVALA 143 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHc-----------CCHhHhhcCcccCCHHHHHHHHHH
Confidence 89999999999996 59999999863210 01122344444443 444445566788999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEec
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELG 758 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~G 758 (782)
||++.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|++++.|
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999988753 789999999999985 59999999999999876
No 248
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.7e-41 Score=356.49 Aligned_cols=227 Identities=29% Similarity=0.398 Sum_probs=183.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCee-----CCCCChHh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED-----LRTFDKSE 611 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~d-----i~~i~~~~ 611 (782)
.|+++||+++|++ ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 3899999999963 468999999999999999999999999999999999999999999999988 77766554
Q ss_pred h----hhceEEEcccCC--C-CcccHHHHHHcCC-CCCCCCHHHHHHHHHHhcchhHHHhCCCCcc-ccccCCCCCCChh
Q 003981 612 W----ARVVSIVNQEPV--L-FSVSVGENIAYGL-PDENVSKDDIIKAAKAANAHDFIISLPQGYD-TLVGERGGLLSGG 682 (782)
Q Consensus 612 l----R~~Ia~V~Q~~~--L-F~gTIreNI~~G~-p~~~~s~eei~~A~~~a~l~dfI~~LP~Gld-T~VGE~G~~LSGG 682 (782)
. ++.|+|++|++. + +..|+.+|+.++. ........+. ...+.++++.+. ++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~--l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVE--IDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcC--CChhhhhcCchhcCHH
Confidence 3 467999999985 2 3468899986421 0000011111 122345555553 32 4566778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecC
Q 003981 683 QRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGT 759 (782)
Q Consensus 683 QrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gt 759 (782)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+|||.+..+.. ||+|++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988643 7899999999999975 99999999999999999
Q ss_pred HHHHHhcc-CchHHH
Q 003981 760 HFELLARK-GQYASL 773 (782)
Q Consensus 760 h~eLl~~~-g~Y~~L 773 (782)
++++.... ..|.++
T Consensus 233 ~~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 233 TDQVLDDPQHPYTQL 247 (253)
T ss_pred HHHHhcCCCCHHHHH
Confidence 99997542 344433
No 249
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-42 Score=345.25 Aligned_cols=182 Identities=29% Similarity=0.428 Sum_probs=162.6
Q ss_pred cEEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCccEEEECCeeCCCCChHhhh
Q 003981 537 DICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY--EPTGGRITVGGEDLRTFDKSEWA 613 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly--~p~~G~I~idG~di~~i~~~~lR 613 (782)
.|+++|++|.|+++. +.++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 389999999997421 257999999999999999999999999999999999986 489999999999885 5678
Q ss_pred hceEEEcccCCCCcc-cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 614 RVVSIVNQEPVLFSV-SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
++++|++|++.+|.+ |++||+.++.. ++ .||||||||++||||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~------------~~------------------------~LSgGe~qrv~la~a 122 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL------------LR------------------------GLSVEQRKRLTIGVE 122 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH------------Hh------------------------cCCHHHhHHHHHHHH
Confidence 899999999998875 99999997510 00 899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhH--HHhcCeEEEEeC-CEEEEec
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLST--VQNAHQIALCSD-GRIAELG 758 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLst--i~~aD~IiVLd~-G~Ive~G 758 (782)
++++|++|||||||++||..+.+.+.+.|+++. +++|+|+|||+++. ...||+|++|++ |+|++.|
T Consensus 123 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 123 LAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999875 47999999999983 577999999999 9999876
No 250
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.4e-41 Score=357.52 Aligned_cols=217 Identities=28% Similarity=0.383 Sum_probs=173.3
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCCChHhhh-h
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--YEPTGGRITVGGEDLRTFDKSEWA-R 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl--y~p~~G~I~idG~di~~i~~~~lR-~ 614 (782)
|+++||+++|+ +.++|+|+||+|++|+++||+|++|||||||+++|+|+ ++|++|+|.+||.++.+.+....+ +
T Consensus 2 i~~~nl~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVE---DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeC---CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 78999999997 34699999999999999999999999999999999999 479999999999999888877665 5
Q ss_pred ceEEEcccCCCCcc-cHHHHHHcC-------CCCCCCCHHHHHHHHHHhcchhHHH--hCCCCccccccCCCCCCChhHH
Q 003981 615 VVSIVNQEPVLFSV-SVGENIAYG-------LPDENVSKDDIIKAAKAANAHDFII--SLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~g-TIreNI~~G-------~p~~~~s~eei~~A~~~a~l~dfI~--~LP~GldT~VGE~G~~LSGGQr 684 (782)
.++||+|++.++.. |..+|+.+. .........++.+.+ .+.++ .+|+++.+... ...||||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~--~~~LS~G~~ 151 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLM-----EEKIALLKMPEDLLTRSV--NVGFSGGEK 151 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHH-----HHHHHHcCCChhhcccCC--CCCCCHHHH
Confidence 79999999988764 545554321 110001111111111 11111 35555544322 237999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHh--cCeEEEEeCCEEEEecCHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQN--AHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~--aD~IiVLd~G~Ive~Gth~ 761 (782)
||++||||++++|+||||||||++||.++.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+|++.|+++
T Consensus 152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999988754 7899999999999987 8999999999999999998
Q ss_pred HHH
Q 003981 762 ELL 764 (782)
Q Consensus 762 eLl 764 (782)
+..
T Consensus 232 ~~~ 234 (248)
T PRK09580 232 LVK 234 (248)
T ss_pred HHH
Confidence 653
No 251
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.4e-41 Score=356.65 Aligned_cols=215 Identities=23% Similarity=0.355 Sum_probs=178.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCCChHhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--YEPTGGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl--y~p~~G~I~idG~di~~i~~~~lR~ 614 (782)
.|+++||+++|+ +.++|+||||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++.+++....++
T Consensus 7 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVN---ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeC---CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 389999999996 34699999999999999999999999999999999998 7899999999999999888776665
Q ss_pred -ceEEEcccCCCCcc-cHHHHHHcCCC-C------CCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCCh
Q 003981 615 -VVSIVNQEPVLFSV-SVGENIAYGLP-D------ENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSG 681 (782)
Q Consensus 615 -~Ia~V~Q~~~LF~g-TIreNI~~G~p-~------~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSG 681 (782)
.++|++|++.+|.+ |+++|+.++.. . ++.+ .+++.++++..++.+ .-.+..++ ..|||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~---~~LSg 154 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP------SFLSRNVN---EGFSG 154 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch------hhhccccc---cCCCH
Confidence 58999999999975 89999986521 0 0011 123344555544431 11222222 15999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh--cCeEEEEeCCEEEEec
Q 003981 682 GQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN--AHQIALCSDGRIAELG 758 (782)
Q Consensus 682 GQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~--aD~IiVLd~G~Ive~G 758 (782)
|||||++|||||+++|+||||||||++||..+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+|++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998875 48999999999999875 8999999999999999
Q ss_pred CHHHH
Q 003981 759 THFEL 763 (782)
Q Consensus 759 th~eL 763 (782)
+++++
T Consensus 235 ~~~~~ 239 (252)
T CHL00131 235 DAELA 239 (252)
T ss_pred Chhhh
Confidence 99844
No 252
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=360.50 Aligned_cols=212 Identities=27% Similarity=0.417 Sum_probs=176.9
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+++|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 4899999999962 3579999999999999999999999999999999999999999999999998742 1223469
Q ss_pred EEEcccCCC---CcccHHHHHHcCCCC-------C-CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 617 SIVNQEPVL---FSVSVGENIAYGLPD-------E-NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 617 a~V~Q~~~L---F~gTIreNI~~G~p~-------~-~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
+||+|++.+ +..++++|+.++... . ...++++.++++..++.++. ++. ...|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~----~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------HRQ----IGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------cCC----cccCCHHHHH
Confidence 999999865 567899999764210 0 11234566677777776543 333 3469999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eL 763 (782)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+ ..||+++++ +|+|++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999999875 478999999999887 459999777 8999999999998
Q ss_pred Hh
Q 003981 764 LA 765 (782)
Q Consensus 764 l~ 765 (782)
..
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 63
No 253
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.5e-41 Score=343.98 Aligned_cols=183 Identities=30% Similarity=0.486 Sum_probs=163.6
Q ss_pred cEEEEeeEEEcCCC---CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCccEEEECCeeCCCCChHh
Q 003981 537 DICLEDVYFSYPLR---PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY--EPTGGRITVGGEDLRTFDKSE 611 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~---~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly--~p~~G~I~idG~di~~i~~~~ 611 (782)
.|+++||+|+|+.. .+.++|+|+||+|++||.++|+|++|||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999731 0257999999999999999999999999999999999999 9999999999998864 36
Q ss_pred hhhceEEEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 612 WARVVSIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 612 lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
+|+.++|++|++.+|. .|++||+.++.. .. .||||||||++||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~---~~---------------------------------~LS~G~~qrv~la 123 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK---LR---------------------------------GLSGGERKRVSIA 123 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH---hc---------------------------------cCCHHHHHHHHHH
Confidence 7889999999999987 599999987521 00 8999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChh-HH-HhcCeEEEEeCCEEEEec
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLS-TV-QNAHQIALCSDGRIAELG 758 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLs-ti-~~aD~IiVLd~G~Ive~G 758 (782)
|||+++|+++||||||++||..+.+.+.+.|+++. +++|+|++||++. .+ ..||+|++|++|+|++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999875 4899999999996 44 459999999999998765
No 254
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.3e-41 Score=340.97 Aligned_cols=171 Identities=24% Similarity=0.449 Sum_probs=157.8
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh-Hhhhhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~I 616 (782)
|+++|++++| +|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++...+. ..+|+.+
T Consensus 5 l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 5 LEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 8999999998 7999999999999999999999999999999999999999999999999988874 4578899
Q ss_pred EEEcccC----CCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 617 SIVNQEP----VLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 617 a~V~Q~~----~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
+||+|++ .+++.|++||+.++.+ ||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh---------------------------------------cCHHHHHHHHHHHH
Confidence 9999995 3456899999987620 99999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEE
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRI 754 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~I 754 (782)
++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.+ ||+|++|++|+|
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999875 47999999999999877 999999999975
No 255
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.5e-41 Score=347.26 Aligned_cols=196 Identities=27% Similarity=0.454 Sum_probs=166.4
Q ss_pred EEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh----Hhhhhc
Q 003981 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK----SEWARV 615 (782)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~----~~lR~~ 615 (782)
++||++.|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++|.++..++. ...++.
T Consensus 1 i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFG---DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEEC---CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 468999996 3479999999999999999999999999999999999999999999999999765542 246788
Q ss_pred eEEEcccCCCCc-ccHHHHHHcCCCCCCC----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 616 VSIVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 616 Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
++||+|++.+|. .|++||+.++...... .++++.++++..++.++. .....+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-----------KQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-----------cCChhhCCHHHHHHHHHH
Confidence 999999999997 7999999885321111 234556666666664432 233467999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEE
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALC 749 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVL 749 (782)
|||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999998875 478999999999988899999885
No 256
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.3e-41 Score=334.13 Aligned_cols=164 Identities=33% Similarity=0.453 Sum_probs=152.3
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|++ ++++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 478999999963 346999999999999999999999999999999999999999999999984 5699
Q ss_pred EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA 697 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p 697 (782)
|++|++.+|++|++|||.++ ....||||||||++||||++++|
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-------------------------------------~~~~LS~G~~~rv~laral~~~p 110 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-------------------------------------WDDVLSGGEQQRLAFARLLLHKP 110 (166)
T ss_pred EECCCCccccccHHHHhhcc-------------------------------------CCCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999863 34789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCE
Q 003981 698 PILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGR 753 (782)
Q Consensus 698 ~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~ 753 (782)
+++||||||++||..+.+.+.+.|+++ ++|+|++||++.....||+|++|++|-
T Consensus 111 ~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 111 KFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999999999886 689999999999989999999998864
No 257
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.3e-41 Score=361.63 Aligned_cols=216 Identities=32% Similarity=0.475 Sum_probs=189.8
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+..|.. +..+|+||||+|++|+.+|++||+|||||||+++|+|+..|++|+|.++|.|...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 3788999999962 35799999999999999999999999999999999999999999999999988765 77899999
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCC---CC-CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLP---DE-NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p---~~-~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
|||||+|.++. -|++||+.|... .+ ...++++.+.++..++.+.- ...-..||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 99999999885 599999987321 11 12356788888888776521 2345679999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMK-G-RTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~-kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ + +|+++.||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999875 4 699999999999988 999999999999999999998755
No 258
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6.2e-41 Score=352.77 Aligned_cols=207 Identities=29% Similarity=0.436 Sum_probs=181.4
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++| +..++
T Consensus 5 l~~~~l~~~~~---~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 5 VSLENVSVSFG---QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEeceEEEEC---CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 89999999996 34699999999999999999999999999999999999999999999987 24699
Q ss_pred EEcccCCCCc---ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 618 IVNQEPVLFS---VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 618 ~V~Q~~~LF~---gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
|++|++.++. .|+++|+.+.. ..+++++.++++..++.+++.. ....||||||||++||||++
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~ 136 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRP---GTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALL 136 (251)
T ss_pred EeccccccccccChhHHHHHhccc---cccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 9999998875 48999997642 2457788899988888776543 34679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhccCchH
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLARKGQYA 771 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~ 771 (782)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++ +|++.|+++|+.. ...|.
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~ 214 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFI 214 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHH
Confidence 99999999999999999999999999988753 789999999999985 5999999965 7999999999864 45566
Q ss_pred HHH
Q 003981 772 SLV 774 (782)
Q Consensus 772 ~L~ 774 (782)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 665
No 259
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.6e-41 Score=342.21 Aligned_cols=185 Identities=32% Similarity=0.466 Sum_probs=163.4
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCCChHhh-hh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--YEPTGGRITVGGEDLRTFDKSEW-AR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl--y~p~~G~I~idG~di~~i~~~~l-R~ 614 (782)
++++||+++|+ +.++|+|+||++++||.++|+|++|||||||+++|+|+ ++|++|+|.+||+++.+.+.... |.
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVG---GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeC---CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 46899999996 34799999999999999999999999999999999999 58999999999999999887654 55
Q ss_pred ceEEEcccCCCCcc-cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 615 VVSIVNQEPVLFSV-SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
.++||+|++.+|++ |+++|+ .. ....||||||||++||||+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l---------------------------~~-----------~~~~LS~G~~qrv~laral 119 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL---------------------------RY-----------VNEGFSGGEKKRNEILQLL 119 (200)
T ss_pred cEEEeecChhhccCccHHHHH---------------------------hh-----------ccccCCHHHHHHHHHHHHH
Confidence 69999999999875 444444 00 1147999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHH--hcCeEEEEeCCEEEEecCHHHHH
Q 003981 694 LKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQ--NAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 694 lr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~--~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
+++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+. .||+|++|++|++++.|+ .|+.
T Consensus 120 ~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~-~~~~ 192 (200)
T cd03217 120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD-KELA 192 (200)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEcc-HHHH
Confidence 999999999999999999999999999998754 789999999999998 699999999999999994 4454
No 260
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.1e-40 Score=385.53 Aligned_cols=215 Identities=32% Similarity=0.535 Sum_probs=184.4
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhh-hc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWA-RV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR-~~ 615 (782)
.|+++|++++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 499999999996 34699999999999999999999999999999999999999999999999999887776655 46
Q ss_pred eEEEcccCCCCcc-cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 616 VSIVNQEPVLFSV-SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 616 Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
|+||+|++.+|.. |++||+.++.......++++.++++..++.++ .+ .....||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~----~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-------LD----SSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-------cc----CChhhCCHHHHHHHHHHHHHH
Confidence 9999999998874 99999998743211123455566655555332 23 334679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHh
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999998874 47899999999998855 99999999999999999988754
No 261
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.2e-40 Score=350.36 Aligned_cols=215 Identities=27% Similarity=0.443 Sum_probs=178.8
Q ss_pred EEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEE
Q 003981 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (782)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 618 (782)
+++||++. .+|+|+||+|++||+++|+|++|||||||+++|+|+++ .+|+|.+||.++.+.+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 46777774 26999999999999999999999999999999999996 59999999999998888888899999
Q ss_pred EcccCC-CCcccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 619 VNQEPV-LFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 619 V~Q~~~-LF~gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
|+|++. .+..|++||+.++.+. ..+ ++++.++++..++.+ ........||||||||++|||||
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al 141 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDD-----------KLGRSVNQLSGGEWQRVRLAAVV 141 (248)
T ss_pred ecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHHH
Confidence 999985 5578999999987432 111 233445554444433 33445678999999999999999
Q ss_pred cc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHH
Q 003981 694 LK-------NAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 694 lr-------~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
+. +|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++.
T Consensus 142 ~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 142 LQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred hccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 97 679999999999999999999999998875 478999999999966 559999999999999999999986
Q ss_pred hccCchHHHH
Q 003981 765 ARKGQYASLV 774 (782)
Q Consensus 765 ~~~g~Y~~L~ 774 (782)
.. ....+.+
T Consensus 222 ~~-~~~~~~~ 230 (248)
T PRK03695 222 TP-ENLAQVF 230 (248)
T ss_pred Cc-hHHHHHh
Confidence 43 2334444
No 262
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.6e-41 Score=335.86 Aligned_cols=177 Identities=34% Similarity=0.567 Sum_probs=160.8
Q ss_pred EEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEE
Q 003981 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (782)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 618 (782)
+++||+|+|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999963 469999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC
Q 003981 619 VNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAP 698 (782)
Q Consensus 619 V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ 698 (782)
++| +++..++.+++. .....||||||||++||||++++|+
T Consensus 78 ~~q-----------------------------~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~ 117 (180)
T cd03214 78 VPQ-----------------------------ALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPP 117 (180)
T ss_pred HHH-----------------------------HHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999 555666666543 2457899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEec
Q 003981 699 ILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELG 758 (782)
Q Consensus 699 ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~G 758 (782)
++||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|++++.|
T Consensus 118 llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 118 ILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999998765 78999999999998 559999999999998764
No 263
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=9.5e-41 Score=347.29 Aligned_cols=208 Identities=35% Similarity=0.481 Sum_probs=171.7
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC----CccEEEECCeeCCCCChHhhhhceEEEcccCC-CCc--
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP----TGGRITVGGEDLRTFDKSEWARVVSIVNQEPV-LFS-- 627 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p----~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~-LF~-- 627 (782)
+|+|+||+|++||+++|+|++|||||||+++|+|+++| ++|+|.+||+++... +..++.|+||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998754 223468999999995 454
Q ss_pred ccHHHHHHcCCCC----CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 003981 628 VSVGENIAYGLPD----ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILD 703 (782)
Q Consensus 628 gTIreNI~~G~p~----~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILD 703 (782)
-|+.||+.++... ....++++.++++..++.+ + ++........||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 5999998653210 0111334666666666542 1 23445667789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhcc-CchHH
Q 003981 704 EATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLARK-GQYAS 772 (782)
Q Consensus 704 EaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~~-g~Y~~ 772 (782)
|||++||..+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+|++.|+++++.... +.|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999998753 789999999999996 59999999999999999999998653 44443
No 264
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.4e-40 Score=346.11 Aligned_cols=193 Identities=31% Similarity=0.497 Sum_probs=162.2
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCc-ccHHHHH
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS-VSVGENI 634 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~-gTIreNI 634 (782)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. .+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5799999999999999999999999999999999999999999999998765542 489999999997 6999999
Q ss_pred HcCCC--CCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCC
Q 003981 635 AYGLP--DENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSA 708 (782)
Q Consensus 635 ~~G~p--~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSA 708 (782)
.++.. ....+++ ++.++++..++.++ .......||||||||++|||||+.+|+||||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEA-----------ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHH-----------HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 87520 0123322 34455555555433 2334567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 709 LDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 709 LD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+|++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998875 37899999999998755 9999999999999999876653
No 265
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-41 Score=343.44 Aligned_cols=220 Identities=35% Similarity=0.548 Sum_probs=193.0
Q ss_pred cEEEEeeEEEcCCCCC---------------------ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCcc
Q 003981 537 DICLEDVYFSYPLRPD---------------------VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~---------------------~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G 595 (782)
.|+++||+.-+..++. .--++|+||+|+.||...|.|=||||||||+++|.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4888999887754321 1238999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCChHhhh----hceEEEcccCCCC-cccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCC
Q 003981 596 RITVGGEDLRTFDKSEWA----RVVSIVNQEPVLF-SVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQ 666 (782)
Q Consensus 596 ~I~idG~di~~i~~~~lR----~~Ia~V~Q~~~LF-~gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~ 666 (782)
+|++||.|+..++.++|| +.+++|+|.--|| +.||.||..||..-...+ ++...++++.+++++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999988875 5799999999998 589999999995432333 455778899999999987777
Q ss_pred CccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhH-HHhc
Q 003981 667 GYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLST-VQNA 743 (782)
Q Consensus 667 GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLst-i~~a 743 (782)
..||||+|||+.|||||..||+||++|||+|||||--....|+-|.++. -.||+|+|||.|.. ++-.
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 4699999999999999999999999999999999988888998886654 37999999999975 6779
Q ss_pred CeEEEEeCCEEEEecCHHHHHhcc
Q 003981 744 HQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 744 D~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|||..|++|+||+.||++|++.+.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999999764
No 266
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-40 Score=389.39 Aligned_cols=225 Identities=30% Similarity=0.445 Sum_probs=185.5
Q ss_pred cEEEEeeEEEcCCCC--------CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC
Q 003981 537 DICLEDVYFSYPLRP--------DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD 608 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~--------~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~ 608 (782)
-++++||++.|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+.+|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 246999999999999999999999999999999999999999999999999998776
Q ss_pred hH---hhhhceEEEcccCC--CCc-ccHHHHHHcCCCCCC-CC----HHHHHHHHHHhcch-hHHHhCCCCccccccCCC
Q 003981 609 KS---EWARVVSIVNQEPV--LFS-VSVGENIAYGLPDEN-VS----KDDIIKAAKAANAH-DFIISLPQGYDTLVGERG 676 (782)
Q Consensus 609 ~~---~lR~~Ia~V~Q~~~--LF~-gTIreNI~~G~p~~~-~s----~eei~~A~~~a~l~-dfI~~LP~GldT~VGE~G 676 (782)
.. .+|++|+||+|+++ +|. -||.||+.++..... .+ ++++.++++..++. +... ..-
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-----------~~~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW-----------RYP 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhh-----------CCc
Confidence 43 46778999999984 664 699999976410001 11 23455556655553 2222 234
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCE
Q 003981 677 GLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGR 753 (782)
Q Consensus 677 ~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~ 753 (782)
..||||||||++|||||+.+|+|||||||||+||..+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999999999988753 7899999999999865 99999999999
Q ss_pred EEEecCHHHHHhc-cCchHH
Q 003981 754 IAELGTHFELLAR-KGQYAS 772 (782)
Q Consensus 754 Ive~Gth~eLl~~-~g~Y~~ 772 (782)
|++.|+.+++... ...|.+
T Consensus 542 iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred EEEecCHHHHhcCCCCHHHH
Confidence 9999999999764 334543
No 267
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.3e-40 Score=336.18 Aligned_cols=195 Identities=25% Similarity=0.373 Sum_probs=169.9
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
++++||+++|+ +.++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.++...+ ..+|+.++
T Consensus 1 l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERD---GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeC---CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 46899999996 346999999999999999999999999999999999999999999999999987653 56788999
Q ss_pred EEcccCCCC-cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 618 IVNQEPVLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 618 ~V~Q~~~LF-~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
|++|++.++ +.|++||+.+..+ ...++++.++++..++.++.. + ...+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~--~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrl~laral~~~ 143 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA--DHSDEQVEEALARVGLNGFED-------R----PVAQLSAGQQRRVALARLLLSG 143 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc--cccHHHHHHHHHHcCChhhhc-------C----chhhCCHHHHHHHHHHHHHhcC
Confidence 999999886 6899999998743 245778888888888865432 2 2457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChh-HHHhcCeEEEE
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLS-TVQNAHQIALC 749 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLs-ti~~aD~IiVL 749 (782)
|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+.. ....+|+++++
T Consensus 144 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 144 RPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999999998765 4899999999865 45668898876
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.9e-40 Score=324.42 Aligned_cols=159 Identities=35% Similarity=0.574 Sum_probs=148.4
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh-Hhhhhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~I 616 (782)
|+++||+++|++ .++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++...+. +..|+++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 478999999963 479999999999999999999999999999999999999999999999999988876 4467789
Q ss_pred EEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 617 SIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 617 a~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
+|++| ||||||||++||||++++
T Consensus 78 ~~~~q---------------------------------------------------------LS~G~~qrl~laral~~~ 100 (163)
T cd03216 78 AMVYQ---------------------------------------------------------LSVGERQMVEIARALARN 100 (163)
T ss_pred EEEEe---------------------------------------------------------cCHHHHHHHHHHHHHhcC
Confidence 99999 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEE
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAE 756 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive 756 (782)
|++|||||||++||..+.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999998874 48899999999998765 99999999999985
No 269
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.8e-40 Score=336.47 Aligned_cols=195 Identities=24% Similarity=0.388 Sum_probs=165.7
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|++||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYH---DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeC---CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 68999999996 3469999999999999999999999999999999999999999999999999875 4467889999
Q ss_pred EEcccCCCC-cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 618 IVNQEPVLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 618 ~V~Q~~~LF-~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
|++|++.+| ..|++||+.++.. ....++++.++++..++.+ ..+..+ ..||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~~rv~laral~~~ 145 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIH-FSPGAVGITELCRLFSLEH-------LIDYPC----GLLSSGQKRQVALLRLWMSK 145 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHh-cCcchHHHHHHHHHcCCch-------hhhCCh----hhcCHHHHHHHHHHHHHhcC
Confidence 999999996 5899999998631 1122344555555544433 223333 46999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEE
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIAL 748 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiV 748 (782)
|++|||||||++||..+.+.+.+.|+++. +++|+|++||+...+.+||.-++
T Consensus 146 p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 146 AKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 99999999999999999999999999863 58899999999999999997654
No 270
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.2e-40 Score=367.71 Aligned_cols=228 Identities=32% Similarity=0.458 Sum_probs=187.2
Q ss_pred cEEEEeeEEEcCCC--------CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCee--CCC
Q 003981 537 DICLEDVYFSYPLR--------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED--LRT 606 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~--------~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~d--i~~ 606 (782)
-++++|++..|..+ ....+++||||++++||++||||+||||||||+++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999842 12468999999999999999999999999999999999999999999999987 332
Q ss_pred CChHhhhhceEEEcccCCCC---cccHHHHHHcCC----CCC-CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCC
Q 003981 607 FDKSEWARVVSIVNQEPVLF---SVSVGENIAYGL----PDE-NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGL 678 (782)
Q Consensus 607 i~~~~lR~~Ia~V~Q~~~LF---~gTIreNI~~G~----p~~-~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~ 678 (782)
-+...+|+.+-+|+|||+=. ..||+++|.--. +.. ....+.+.+.++.+++..- ...-.-..
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP~e 429 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYPHE 429 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCchh
Confidence 23456788999999999842 479999996321 110 1112335555666666531 23344567
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEE
Q 003981 679 LSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIA 755 (782)
Q Consensus 679 LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Iv 755 (782)
||||||||+||||||..+|+++|+||||||||+-+.+.|.+.|.++.+ |.|.|+|+|.++.++. ||||+||++|+||
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999988764 7899999999999987 9999999999999
Q ss_pred EecCHHHHHhc-cCchHHHH
Q 003981 756 ELGTHFELLAR-KGQYASLV 774 (782)
Q Consensus 756 e~Gth~eLl~~-~g~Y~~L~ 774 (782)
|.|+.+++.+. ...|.+..
T Consensus 510 E~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 510 EEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999876 56676654
No 271
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.6e-40 Score=344.26 Aligned_cols=194 Identities=28% Similarity=0.448 Sum_probs=160.6
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEc-ccCCCC-cccH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVN-QEPVLF-SVSV 630 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~-Q~~~LF-~gTI 630 (782)
.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4799999999999999999999999999999999999999999999999987653 356788999997 667776 5799
Q ss_pred HHHHHcCCCCCCCCHHHHH----HHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC
Q 003981 631 GENIAYGLPDENVSKDDII----KAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEAT 706 (782)
Q Consensus 631 reNI~~G~p~~~~s~eei~----~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaT 706 (782)
+||+.++......+.++.. ++++..+ +++..++.+ ..||||||||++|||||+.+|+||||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-------l~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLD-------LEELLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------ChhHhcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 9999765211123333333 2233222 333345544 569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEec
Q 003981 707 SALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELG 758 (782)
Q Consensus 707 SALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~G 758 (782)
++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998753 7899999999998765 9999999999999865
No 272
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-40 Score=336.30 Aligned_cols=197 Identities=22% Similarity=0.356 Sum_probs=170.3
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|+ +.++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERD---ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEEC---CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 68999999996 346999999999999999999999999999999999999999999999999987654 45778899
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCCCC-CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPDEN-VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~~~-~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
|++|++.+|. .|++|||.++.+... .+++++.++++..++.++... ....||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhc
Confidence 9999998886 699999987643211 345677888888888765422 346799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEE
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALC 749 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVL 749 (782)
+|+||||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998874 47899999999999954 5677766
No 273
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-40 Score=380.20 Aligned_cols=214 Identities=28% Similarity=0.390 Sum_probs=179.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CccEEEECCeeCCCCChHh-hh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP--TGGRITVGGEDLRTFDKSE-WA 613 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p--~~G~I~idG~di~~i~~~~-lR 613 (782)
-|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +|
T Consensus 5 ~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 389999999996 34799999999999999999999999999999999999996 8999999999998777654 46
Q ss_pred hceEEEcccCCCCc-ccHHHHHHcCCCCC---CCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDE---NVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~---~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
+.|+||+|++.+|. -|++|||.++.... ..+.+ ++.++++..++. .........|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-----------INPATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-----------CCcccchhhCCHHHHH
Confidence 78999999999886 59999999873210 11222 233444333332 2223344679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
|++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999999998874 47899999999999865 999999999999999998776
Q ss_pred H
Q 003981 764 L 764 (782)
Q Consensus 764 l 764 (782)
.
T Consensus 231 ~ 231 (506)
T PRK13549 231 T 231 (506)
T ss_pred C
Confidence 4
No 274
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=382.99 Aligned_cols=214 Identities=26% Similarity=0.347 Sum_probs=179.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh-hhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~ 615 (782)
-|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.
T Consensus 5 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 389999999996 3469999999999999999999999999999999999999999999999999988876553 467
Q ss_pred eEEEcccCCCCcc-cHHHHHHcCCC-C---CC---CCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 616 VSIVNQEPVLFSV-SVGENIAYGLP-D---EN---VSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 616 Ia~V~Q~~~LF~g-TIreNI~~G~p-~---~~---~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
|+||+|++.+|.. |++||+.++.. . .. .+. +++.++++..++. +-.+. ...+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-------~~~~~----~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-------VDLDE----KVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-------CCccc----chhhCCHHH
Confidence 9999999998874 99999988631 0 00 111 2333444443332 22333 345799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHH
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~ 761 (782)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+.+
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999998875 47899999999999865 9999999999999999988
Q ss_pred HHH
Q 003981 762 ELL 764 (782)
Q Consensus 762 eLl 764 (782)
++.
T Consensus 231 ~~~ 233 (510)
T PRK09700 231 DVS 233 (510)
T ss_pred hCC
Confidence 764
No 275
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.7e-41 Score=316.53 Aligned_cols=194 Identities=29% Similarity=0.498 Sum_probs=168.9
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHH
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIr 631 (782)
+.++|+|+||++.+||++||.||||||||||+|.++-+..|++|++++.|+|++.++++.+|++|+|+.|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCC--CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 003981 632 ENIAYGLP--DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSAL 709 (782)
Q Consensus 632 eNI~~G~p--~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSAL 709 (782)
||+-|--- ++..+.+.-.+-++.+++. ++.+..+-.+|||||||||||+|-|---|+||+|||+||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~----------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALP----------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCc----------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99987410 1112223333333333333 34556678899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEEecChhH-HHhcCeEEEEeCCEEE
Q 003981 710 DAVSERLVQDALNHLM--KGRTTLVIAHRLST-VQNAHQIALCSDGRIA 755 (782)
Q Consensus 710 D~~tE~~I~~~L~~l~--~~kTvIvIaHRLst-i~~aD~IiVLd~G~Iv 755 (782)
|..+.+.|.+.|.++. ++..++.|||.... +++||+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999999998886 57789999999987 9999999999999874
No 276
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.6e-37 Score=338.08 Aligned_cols=508 Identities=18% Similarity=0.209 Sum_probs=333.5
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHH----HHHHHHHHH
Q 003981 207 GARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGEL----SGLLTSDLG 282 (782)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l----~srlt~Dv~ 282 (782)
+.+...++......+..+.+...+..+..+..+-+..+...++..-++++.++-- .||.-.+.++. =.|+++|++
T Consensus 115 ~kd~~~F~~~~~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~-~yYkis~~d~ridNPDQrltqDv~ 193 (659)
T KOG0060|consen 115 NKDAELFKRLLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGF-TYYKLSNLDDRIDNPDQRLTQDVE 193 (659)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccc-eEEEecccccccCChHHHHhHHHH
Confidence 3333444444444444444444444444455555555666666666666665432 33332222222 258999998
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003981 283 SLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVL-TVSVLVAVYKRSTVPVFKAHGLAQASIADCVTET 361 (782)
Q Consensus 283 ~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 361 (782)
.....+.+.... ...+++.++.+..-++....++.++.++.-+ +..++...+++...+...++++..++..-.-.+.
T Consensus 194 kf~~~l~sl~s~--l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rl 271 (659)
T KOG0060|consen 194 KFCRQLSSLYSN--LLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRL 271 (659)
T ss_pred HHHHHHHHHHHh--hhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeee
Confidence 887777654431 3334444444444444444444444332222 2223344455555555556666666666666788
Q ss_pred HhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCHHHHHH
Q 003981 362 FSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKV----KAGELSVGIVAS 437 (782)
Q Consensus 362 l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv----~~g~lt~G~l~a 437 (782)
..|.+.|-.|+.++.+..+..+..+...+...+.-.+...+..+.++.-+++.++-+.+-+.-+ ..+++|+.++..
T Consensus 272 r~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~ 351 (659)
T KOG0060|consen 272 RVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSG 351 (659)
T ss_pred eecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHH
Confidence 8999999999999998887777776666665555444444444444444443332222111111 336788888877
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccccccccchhhhhhhhhccCCCCccc
Q 003981 438 FIGYT----FTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQ 513 (782)
Q Consensus 438 ~~~~~----~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (782)
.+... ..+...+..+.....++.+...-..||.++.+.-. +......+... ..+...|..
T Consensus 352 ~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~--d~~~~~~~~~~-~~~~~~E~~------------- 415 (659)
T KOG0060|consen 352 LISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLD--DLSSGSQECTM-EEEELGEAE------------- 415 (659)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH--HhccCCcchhh-hhhhhhhhh-------------
Confidence 65443 34455566666677778888888899998875311 00000000000 000000000
Q ss_pred ccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 003981 514 HLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT 593 (782)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~ 593 (782)
+....+... ....+.+..|+|++|+++=|++ +..+.+|+||+|+.|+.+-|.||||||||+|++.|.|+|+-.
T Consensus 416 -----~~l~~~~G~-~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~ 488 (659)
T KOG0060|consen 416 -----WGLSLPPGS-GKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST 488 (659)
T ss_pred -----hccCCCCCC-cccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC
Confidence 000000000 0111224579999999999964 556788899999999999999999999999999999999999
Q ss_pred ccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcC-----CCCCCCCHHHHHHHHHHhcchhHHHhCCCCc
Q 003981 594 GGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYG-----LPDENVSKDDIIKAAKAANAHDFIISLPQGY 668 (782)
Q Consensus 594 ~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G-----~p~~~~s~eei~~A~~~a~l~dfI~~LP~Gl 668 (782)
+|.|.--...-. +.+-||||.|+.=.||+||-+.|- .....++|++|.+-++.+++.+.++ ..+|+
T Consensus 489 ~G~l~k~~~~~~--------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~-r~ggl 559 (659)
T KOG0060|consen 489 GGKLTKPTDGGP--------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLE-REGGL 559 (659)
T ss_pred CCeEEecccCCC--------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHH-HhCCC
Confidence 999986433111 348999999999999999999985 1123578999999999999988654 56899
Q ss_pred ccccc-CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEE
Q 003981 669 DTLVG-ERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIA 747 (782)
Q Consensus 669 dT~VG-E~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~Ii 747 (782)
|+++- |-...||+||+||+|.||-+|.+|++-||||+|||||.+.|..+-+-+++ .|-|.|.|.||-|.-+.-|.++
T Consensus 560 d~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~kfHd~~L 637 (659)
T KOG0060|consen 560 DQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLWKFHDYVL 637 (659)
T ss_pred CchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHHhhhhEEE
Confidence 97664 66788999999999999999999999999999999999999999999887 4899999999999999999999
Q ss_pred EEeC
Q 003981 748 LCSD 751 (782)
Q Consensus 748 VLd~ 751 (782)
-|+.
T Consensus 638 ~~~g 641 (659)
T KOG0060|consen 638 RMDG 641 (659)
T ss_pred EecC
Confidence 9986
No 277
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.8e-40 Score=334.97 Aligned_cols=196 Identities=29% Similarity=0.418 Sum_probs=169.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||++.|+ +..+|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|+++|.++.. .. +|++++
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRG---GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEEC---CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 78999999996 3469999999999999999999999999999999999999999999999998753 22 888999
Q ss_pred EEcccCCCC-cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 618 IVNQEPVLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 618 ~V~Q~~~LF-~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
|++|++.++ +.|++||+.+........++++.++++..++.++.. .| ...||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~----------~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LP----------FGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CC----------hhhcCHHHHHHHHHHHHHhcC
Confidence 999988775 689999998753211234567888888888876432 22 247999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEEeC
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALCSD 751 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~ 751 (782)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999998763 58999999999999998 99988854
No 278
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.4e-40 Score=380.02 Aligned_cols=213 Identities=27% Similarity=0.386 Sum_probs=177.7
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh-hhhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~I 616 (782)
|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.|
T Consensus 5 i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 5 LQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred EEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 89999999996 357999999999999999999999999999999999999999999999999987766544 35789
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCC----CCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPD----ENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~----~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
+||+|++.+|. -|++|||.++... ...+.+ ++.++++..++.+ -.+ ..-.+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~----~~~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-------SSD----KLVGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-------Ccc----CchhhCCHHHHHHH
Confidence 99999998886 5999999986321 011222 2333443333322 223 33457999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|+.+++.
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999999998874 47899999999998864 9999999999999999877653
No 279
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=6.1e-40 Score=333.40 Aligned_cols=195 Identities=27% Similarity=0.372 Sum_probs=165.7
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|+ +.++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.+||.++...+ ..++++++
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRG---ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 46899999996 347999999999999999999999999999999999999999999999999988765 45788999
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
|++|++.+|. .|++||+.++.+.....++++.++++..++.++.. + ....||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-------L----PAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-------C----ChhhcCHHHHHHHHHHHHHhcC
Confidence 9999999986 79999998763211112446788888888876643 2 2357999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhHHHhcCeEEE
Q 003981 697 APILILDEATSALDAVSERLVQDALNHL-MKGRTTLVIAHRLSTVQNAHQIAL 748 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l-~~~kTvIvIaHRLsti~~aD~IiV 748 (782)
|+++||||||++||..+.+.+.+.|+++ .+++|+|++||+...+. +|+.++
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999999886 35789999999986544 355544
No 280
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=376.44 Aligned_cols=209 Identities=29% Similarity=0.435 Sum_probs=175.2
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh-Hhhhhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~ 615 (782)
-|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFP---GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEEC---CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 389999999996 3469999999999999999999999999999999999999999999999999876553 456788
Q ss_pred eEEEcccCCCCcc-cHHHHHHcCCCCC--C-CCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 616 VSIVNQEPVLFSV-SVGENIAYGLPDE--N-VSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 616 Ia~V~Q~~~LF~g-TIreNI~~G~p~~--~-~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
|+||+|++.+|.. |++||+.++.... . .+. +++.++++..++. .........||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-----------IDPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-----------CCcCCchhhCCHHHHHHH
Confidence 9999999999875 9999999863110 1 122 2344444444332 122334567999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecC
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGT 759 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gt 759 (782)
+|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.+.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999999999998874 47899999999998865 99999999999987665
No 281
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7.1e-40 Score=386.35 Aligned_cols=213 Identities=30% Similarity=0.442 Sum_probs=178.2
Q ss_pred EEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--ccEEEECCeeCCCCChHhhhhceE
Q 003981 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT--GGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~--~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
.+|++.+|+ ++.+|+|||+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++. ...+++++
T Consensus 71 ~~~l~~~~~---~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~ 143 (659)
T PLN03211 71 ISDETRQIQ---ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTG 143 (659)
T ss_pred cccccccCC---CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceE
Confidence 344555553 357999999999999999999999999999999999999985 899999999874 24567799
Q ss_pred EEcccCCCCc-ccHHHHHHcCC----CCCCCCHHHHHHHHHHhcchhHHH--hCCCCccccccCC-CCCCChhHHHHHHH
Q 003981 618 IVNQEPVLFS-VSVGENIAYGL----PDENVSKDDIIKAAKAANAHDFII--SLPQGYDTLVGER-GGLLSGGQRQRIAI 689 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~----p~~~~s~eei~~A~~~a~l~dfI~--~LP~GldT~VGE~-G~~LSGGQrQRIaI 689 (782)
||+|++.+|. .|++|||.++. | ...++++..+.+ ++.++ .|++..||.||++ ...||||||||++|
T Consensus 144 yv~Q~~~l~~~lTV~E~l~~~a~~~~~-~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~i 217 (659)
T PLN03211 144 FVTQDDILYPHLTVRETLVFCSLLRLP-KSLTKQEKILVA-----ESVISELGLTKCENTIIGNSFIRGISGGERKRVSI 217 (659)
T ss_pred EECcccccCCcCCHHHHHHHHHHhCCC-CCCCHHHHHHHH-----HHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHH
Confidence 9999999996 59999998852 2 123444433222 22232 3555669999865 67899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhH--HHhcCeEEEEeCCEEEEecCHHHHHh
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLST--VQNAHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLst--i~~aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. .+.+|+|++|++|++++.|+++++.+
T Consensus 218 a~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 218 AHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred HHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999999999999999999999999876 58999999999984 46699999999999999999999974
No 282
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.7e-40 Score=389.62 Aligned_cols=220 Identities=28% Similarity=0.398 Sum_probs=184.3
Q ss_pred cEEEEeeEEEcCCC------CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCC
Q 003981 537 DICLEDVYFSYPLR------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRTF 607 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~------~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~---~G~I~idG~di~~i 607 (782)
+++|.++. +++.. .++++|+|+|++|++||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 56777776 55422 2567999999999999999999999999999999999999885 899999999875
Q ss_pred ChHhhhhceEEEcccCCCCc-ccHHHHHHcCCCCC---CCCHHHHHHHHHHhcchhHHHh--CCCCccccccCC--CCCC
Q 003981 608 DKSEWARVVSIVNQEPVLFS-VSVGENIAYGLPDE---NVSKDDIIKAAKAANAHDFIIS--LPQGYDTLVGER--GGLL 679 (782)
Q Consensus 608 ~~~~lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~---~~s~eei~~A~~~a~l~dfI~~--LP~GldT~VGE~--G~~L 679 (782)
...+|+.++||+|++++|+ .||+|||.|+.... +.+.++.. ..+++.++. |++..||.||+. +..|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKR-----ERVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHH-----HHHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 4678999999999999995 59999999863211 22333221 122333443 556789999985 4889
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChh--HHHhcCeEEEEeCCEEEE
Q 003981 680 SGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLS--TVQNAHQIALCSDGRIAE 756 (782)
Q Consensus 680 SGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLs--ti~~aD~IiVLd~G~Ive 756 (782)
|||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +|+|+|+++|+++ ....+|+|++|++|++++
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 9999999999999999999999999999999999999999999886 4899999999996 367899999999999999
Q ss_pred ecCHHHHHh
Q 003981 757 LGTHFELLA 765 (782)
Q Consensus 757 ~Gth~eLl~ 765 (782)
.|+++|+.+
T Consensus 248 ~G~~~~~~~ 256 (617)
T TIGR00955 248 LGSPDQAVP 256 (617)
T ss_pred ECCHHHHHH
Confidence 999999864
No 283
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-39 Score=323.50 Aligned_cols=220 Identities=29% Similarity=0.451 Sum_probs=187.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh-hhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~I 616 (782)
++++||+-.|. ...+|+||||++++||.++++|++|+||||+++.|+|+.+|.+|+|.++|.||...+++.. |.-|
T Consensus 4 L~v~~l~~~YG---~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeeccc---ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 78999999996 3579999999999999999999999999999999999999999999999999999987765 6679
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
+||||.-.+|. -||+||+.+|.-. ..+++-. ...+++..+-+| -+......+|.+|||||+|-+||||||..
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~--~~~~~~~----~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYA--RRDKEAQ----ERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhc--ccccccc----cccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 99999999996 6999999988311 1111110 011222223344 46667788999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
+|++|+|||||.+|-|.--+.|.+.|+++.+ +-|+++|-++.... +-||+-+||++|+|+..|+-+||.+..
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999874 55999999998765 569999999999999999999998763
No 284
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-40 Score=319.97 Aligned_cols=216 Identities=29% Similarity=0.470 Sum_probs=184.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
+++.+++.+|++ -..+++||||+++.||.+||.|++||||||+++.|..+..|++|.|++||.|+.. ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 678899999973 3458999999999999999999999999999999999999999999999999877 4567899999
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCCCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPDENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
+++-+.-|+. -|.||||.|...-.+.++. ++.+..+.-++.+. .|+.+ .+||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-------~~rRv----~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-------LDRRV----GEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-------HHHHH----hhhchhhHHHHHHHHH
Confidence 9998888885 6999999875211122333 33333333444443 34444 4599999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|++||+|+|||||||+||..+.+.+.+-|.++.. ||++|+-||-++.++ -||+|+|+.+|++|..|+.+++.++.
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 9999999999999999999999999999998875 999999999999998 69999999999999999999998753
No 285
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.3e-39 Score=375.35 Aligned_cols=210 Identities=22% Similarity=0.274 Sum_probs=182.8
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 899999999963 35999999999999999999999999999999999999999999999999887777777888899
Q ss_pred EEcccCCC---------CcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 618 IVNQEPVL---------FSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 618 ~V~Q~~~L---------F~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
||+|++.+ +.-|++||+.++. ..++++.++++..++.+.. ......||||||||++
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 145 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV----KDPARCEQLAQQFGITALL-----------DRRFKYLSTGETRKTL 145 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch----hHHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHHHHH
Confidence 99998753 2569999987651 1245667777666665432 2344679999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||+.+|++|||||||++||+++.+.+.+.|+++. +++|+|+|||++..+.+ ||+|++|++|+|++.|+.+++..
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998875 47899999999998865 99999999999999999988764
No 286
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9.7e-40 Score=379.60 Aligned_cols=219 Identities=31% Similarity=0.468 Sum_probs=180.4
Q ss_pred cEEEEeeEEEcCCC--------CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC
Q 003981 537 DICLEDVYFSYPLR--------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD 608 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~--------~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~ 608 (782)
-|+++||+++|+.+ .+.++|+||||+|++||++||+|+||||||||+++|+|++ |++|+|+++|.++..++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999621 1347999999999999999999999999999999999998 49999999999998776
Q ss_pred hHh---hhhceEEEcccC--CCCc-ccHHHHHHcCCC-CC-CCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCC
Q 003981 609 KSE---WARVVSIVNQEP--VLFS-VSVGENIAYGLP-DE-NVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERG 676 (782)
Q Consensus 609 ~~~---lR~~Ia~V~Q~~--~LF~-gTIreNI~~G~p-~~-~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G 676 (782)
... +|+.|+||+|++ .+|. .|++||+.++.. .. ..+ ++++.++++..++.+ .......
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhcCC
Confidence 543 578899999998 3665 599999987521 00 011 233444454444421 1123345
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCE
Q 003981 677 GLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGR 753 (782)
Q Consensus 677 ~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~ 753 (782)
.+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 67999999999999999999999999999999999999999999998753 7899999999998865 99999999999
Q ss_pred EEEecCHHHHHhc
Q 003981 754 IAELGTHFELLAR 766 (782)
Q Consensus 754 Ive~Gth~eLl~~ 766 (782)
|++.|+.+++...
T Consensus 504 i~~~~~~~~~~~~ 516 (529)
T PRK15134 504 VVEQGDCERVFAA 516 (529)
T ss_pred EEEEcCHHHHhcC
Confidence 9999999999764
No 287
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=384.15 Aligned_cols=222 Identities=26% Similarity=0.384 Sum_probs=180.0
Q ss_pred cEEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC----------
Q 003981 537 DICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR---------- 605 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~---------- 605 (782)
-|+++|++++|+... +.++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 489999999996321 347999999999999999999999999999999999999999999999998552
Q ss_pred CCChH---hhh-hceEEEcccC--CCCc-ccHHHHHHcCCCC-CCCCH----HHHHHHHHHhcchhHHHhCCCCcccccc
Q 003981 606 TFDKS---EWA-RVVSIVNQEP--VLFS-VSVGENIAYGLPD-ENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVG 673 (782)
Q Consensus 606 ~i~~~---~lR-~~Ia~V~Q~~--~LF~-gTIreNI~~G~p~-~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VG 673 (782)
+.+.. .+| +.|+||+|+| .++. -||+|||.++... ...+. +++.++++..++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22322 233 4799999998 5776 5999999875210 01222 344455555544210 12234
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecChhHHHh-cCeEEEEe
Q 003981 674 ERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-K-GRTTLVIAHRLSTVQN-AHQIALCS 750 (782)
Q Consensus 674 E~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~-~kTvIvIaHRLsti~~-aD~IiVLd 750 (782)
....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. + |+|+|+|||++..+.. ||+|+||+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 4556799999999999999999999999999999999999999999999875 3 8999999999999855 99999999
Q ss_pred CCEEEEecCHHHHHhc
Q 003981 751 DGRIAELGTHFELLAR 766 (782)
Q Consensus 751 ~G~Ive~Gth~eLl~~ 766 (782)
+|+|++.|+++++...
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999999998753
No 288
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=375.56 Aligned_cols=215 Identities=27% Similarity=0.377 Sum_probs=176.7
Q ss_pred EEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh-HhhhhceEE
Q 003981 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARVVSI 618 (782)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~Ia~ 618 (782)
++|++++|+ +.++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+. ..+|+.++|
T Consensus 1 ~~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 368999996 3479999999999999999999999999999999999999999999999999976654 445778999
Q ss_pred EcccCCCCc-ccHHHHHHcCCC-CCC--CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 619 VNQEPVLFS-VSVGENIAYGLP-DEN--VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 619 V~Q~~~LF~-gTIreNI~~G~p-~~~--~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
|+|++.+|. .|++||+.++.. ... .+.++..+. +.+.+..+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----TKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 699999998631 111 122222211 12223332 3333344556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|+.+++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999998874 47899999999998864 9999999999999999987763
No 289
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.1e-39 Score=375.44 Aligned_cols=222 Identities=27% Similarity=0.398 Sum_probs=181.8
Q ss_pred cEEEEeeEEEcCCC-CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCCChH
Q 003981 537 DICLEDVYFSYPLR-PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTFDKS 610 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~-~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~i~~~ 610 (782)
-|+++||+++|+.+ .+.++|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 38999999999631 125799999999999999999999999999999999999987 799999999999887654
Q ss_pred h---hh-hceEEEcccCC--CCc-ccHHHHHHcCCC-CCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCC
Q 003981 611 E---WA-RVVSIVNQEPV--LFS-VSVGENIAYGLP-DENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGL 678 (782)
Q Consensus 611 ~---lR-~~Ia~V~Q~~~--LF~-gTIreNI~~G~p-~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~ 678 (782)
. +| +.|+||+|++. ++. -|+++|+.++.. ....+ ++++.++++..++.++.. .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3 33 57999999985 443 699999874210 00111 345566666666643210 11234567
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEE
Q 003981 679 LSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIA 755 (782)
Q Consensus 679 LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Iv 755 (782)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. .++|+|+|||++..+.. ||+|++|++|+|+
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998875 37999999999998865 9999999999999
Q ss_pred EecCHHHHHhc
Q 003981 756 ELGTHFELLAR 766 (782)
Q Consensus 756 e~Gth~eLl~~ 766 (782)
+.|+.+++...
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998754
No 290
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.9e-39 Score=334.76 Aligned_cols=202 Identities=30% Similarity=0.416 Sum_probs=163.3
Q ss_pred EEEEeeEEEcCCC---C-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEEC--Ce--eCCCCCh
Q 003981 538 ICLEDVYFSYPLR---P-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVG--GE--DLRTFDK 609 (782)
Q Consensus 538 I~f~nVsF~Y~~~---~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~id--G~--di~~i~~ 609 (782)
|+++||+++|+.. . ..++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 2479999999999999999999999999999999999999999999998 43 6666665
Q ss_pred Hh---h-hhceEEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCC
Q 003981 610 SE---W-ARVVSIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLS 680 (782)
Q Consensus 610 ~~---l-R~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LS 680 (782)
.. + ++.++||+|++.+|. -|++|||.++......+ ++++.++++..++.+... ...+..||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCcccCC
Confidence 43 3 457999999999886 59999998631111122 234444454444433211 22467899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEE
Q 003981 681 GGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALC 749 (782)
Q Consensus 681 GGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVL 749 (782)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999999875 4789999999999885 69999876
No 291
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-39 Score=337.16 Aligned_cols=222 Identities=29% Similarity=0.494 Sum_probs=181.7
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-C----CccEEEECCeeCCCCChHh
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-P----TGGRITVGGEDLRTFDKSE 611 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-p----~~G~I~idG~di~~i~~~~ 611 (782)
++++|++..|.... ...+++||||+|++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|+|+-.++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57889999997532 3579999999999999999999999999999999999998 3 6799999999999999886
Q ss_pred hh----hceEEEcccCCC-Cc--ccHHHHH----HcCCCC--CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCC
Q 003981 612 WA----RVVSIVNQEPVL-FS--VSVGENI----AYGLPD--ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGL 678 (782)
Q Consensus 612 lR----~~Ia~V~Q~~~L-F~--gTIreNI----~~G~p~--~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~ 678 (782)
+| +.|++|+|||.- || -||.+-| ..-... ..--.++..+.++.+++.+- +..+..--..
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 54 479999999853 33 3444444 321100 00013467778888888753 1112233467
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEE
Q 003981 679 LSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIA 755 (782)
Q Consensus 679 LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Iv 755 (782)
||||||||+.||=||..+|++||-||||+|||..++++|.+-|+++.+ |.|+|+|||.+..+.. ||+|.||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999998874 8899999999998855 9999999999999
Q ss_pred EecCHHHHHhcc
Q 003981 756 ELGTHFELLARK 767 (782)
Q Consensus 756 e~Gth~eLl~~~ 767 (782)
|.|+-+|+.++.
T Consensus 234 E~g~~~~i~~~P 245 (316)
T COG0444 234 EEGPVEEIFKNP 245 (316)
T ss_pred EeCCHHHHhcCC
Confidence 999999999764
No 292
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.7e-39 Score=332.68 Aligned_cols=198 Identities=24% Similarity=0.301 Sum_probs=165.9
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-++++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999963 4699999999999999999999999999999999999999999999999988753 346689
Q ss_pred EEEcccCCCCcc-cHHHHHHcCCCCCCC-CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 617 SIVNQEPVLFSV-SVGENIAYGLPDENV-SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 617 a~V~Q~~~LF~g-TIreNI~~G~p~~~~-s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+|++|++.+|.+ |++||+.++...... .++.+.++++..++ ++..++. ...||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~----~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGL-------AGYEDTL----VRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCC-------hhhccCC----hhhCCHHHHHHHHHHHHHh
Confidence 999999999986 999999875321112 23344455544443 3333443 3679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeC
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSD 751 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~ 751 (782)
++|+||||||||++||.++.+.+.+.|+++. +++|+|++||+++.+. -||+|++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998764 4789999999999885 5899999874
No 293
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=381.71 Aligned_cols=221 Identities=30% Similarity=0.472 Sum_probs=186.6
Q ss_pred cEEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh---
Q 003981 537 DICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW--- 612 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l--- 612 (782)
.++++|++++|+... ..++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|++||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 389999999997321 2479999999999999999999999999999999999999999999999999999987764
Q ss_pred -hhceEEEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 613 -ARVVSIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 613 -R~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
|+.++||+|++.+|. .|+.||+.++......+.++. ...++++++.+ |++..+......||||||||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR-----LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 578999999999996 599999987521111121111 11223333433 445555556678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHH
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
|||+++|++|||||||++||..+.+.+.+.|+++. +++|+|+|||++..++.||++++|++|+++++|+.+|..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999999875 489999999999999999999999999999999999885
No 294
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.5e-39 Score=371.07 Aligned_cols=212 Identities=27% Similarity=0.408 Sum_probs=175.7
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CccEEEECCeeCCCCChHh-hhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP--TGGRITVGGEDLRTFDKSE-WAR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p--~~G~I~idG~di~~i~~~~-lR~ 614 (782)
|+++|++++|+ +.++|+||||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++...+... +|+
T Consensus 2 l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeC---CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 78999999996 34699999999999999999999999999999999999987 7999999999998877654 467
Q ss_pred ceEEEcccCCCCc-ccHHHHHHcCCCCC----CCCHH----HHHHHHHHhcchhHHHhCCCCc-cccccCCCCCCChhHH
Q 003981 615 VVSIVNQEPVLFS-VSVGENIAYGLPDE----NVSKD----DIIKAAKAANAHDFIISLPQGY-DTLVGERGGLLSGGQR 684 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~-gTIreNI~~G~p~~----~~s~e----ei~~A~~~a~l~dfI~~LP~Gl-dT~VGE~G~~LSGGQr 684 (782)
.|+||+|++.+|. -|++||+.++.... ..+.+ ++.++++..++ ++.+ +.. ...||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~----~~~LSgG~~ 147 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQL-------DADNVTRP----VGDYGGGQQ 147 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCC-------CCCcccCc----hhhCCHHHH
Confidence 7999999998886 49999999863210 01222 23333333332 2111 222 456999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~e 762 (782)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|+.++
T Consensus 148 qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 148 QLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999999999999999999999999999999998874 47899999999999865 99999999999999988665
Q ss_pred H
Q 003981 763 L 763 (782)
Q Consensus 763 L 763 (782)
.
T Consensus 228 ~ 228 (500)
T TIGR02633 228 M 228 (500)
T ss_pred C
Confidence 4
No 295
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.6e-39 Score=333.82 Aligned_cols=196 Identities=27% Similarity=0.429 Sum_probs=164.8
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCC---CcccHHHHHHcC
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVL---FSVSVGENIAYG 637 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~L---F~gTIreNI~~G 637 (782)
|+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++. ..|++++||+|++.+ |+.|++|||.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999999764 357789999999976 568999999876
Q ss_pred CC-------CC-CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 003981 638 LP-------DE-NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSAL 709 (782)
Q Consensus 638 ~p-------~~-~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSAL 709 (782)
.. .+ ...++++.++++..++.++.. + ....||||||||++|||||+++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELAD-------R----PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhc-------C----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 01 112345777888877765532 2 33469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhccCchHHHH
Q 003981 710 DAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLARKGQYASLV 774 (782)
Q Consensus 710 D~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~ 774 (782)
|+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|+++ +|+|++.|+++++.+. ..+.+++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~-~~~~~~~ 209 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP-APWMTTF 209 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh-HHHHHHh
Confidence 9999999999999875 4889999999999875 49999999 7999999999998764 3344443
No 296
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-38 Score=337.22 Aligned_cols=199 Identities=23% Similarity=0.369 Sum_probs=166.4
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCc-ccH
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS-VSV 630 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~-gTI 630 (782)
..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.++|. +++++|++.+++ .|+
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTG 102 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcH
Confidence 346899999999999999999999999999999999999999999999996 678889887764 699
Q ss_pred HHHHHcCCCCCCCCHHHHHH----HHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC
Q 003981 631 GENIAYGLPDENVSKDDIIK----AAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEAT 706 (782)
Q Consensus 631 reNI~~G~p~~~~s~eei~~----A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaT 706 (782)
+|||.++......+.++..+ +++..++.++ +......||||||||++||||++.+|+||||||||
T Consensus 103 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt 171 (264)
T PRK13546 103 IENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEF-----------IYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAL 171 (264)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence 99998742111233444433 3333344333 33456789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhccCchHHHH
Q 003981 707 SALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARKGQYASLV 774 (782)
Q Consensus 707 SALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~ 774 (782)
++||+.+.+.+.+.|.++. .++|+|+|||++..+.. ||+|++|++|+|++.|+++++.++.+.|-+..
T Consensus 172 ~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 241 (264)
T PRK13546 172 SVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDF 241 (264)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHHHH
Confidence 9999999999999998874 48899999999999865 99999999999999999999998765555544
No 297
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.4e-39 Score=372.72 Aligned_cols=223 Identities=26% Similarity=0.436 Sum_probs=178.6
Q ss_pred cEEEEeeEEEcCC--CCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEEC-Cee---CCCCC--
Q 003981 537 DICLEDVYFSYPL--RPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVG-GED---LRTFD-- 608 (782)
Q Consensus 537 ~I~f~nVsF~Y~~--~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~id-G~d---i~~i~-- 608 (782)
-|+++||+++|++ +.+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999963 123479999999999999999999999999999999999999999999996 643 33332
Q ss_pred -hHhhhhceEEEcccCCCCc-ccHHHHHHcCCCC--CC-CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 609 -KSEWARVVSIVNQEPVLFS-VSVGENIAYGLPD--EN-VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 609 -~~~lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p~--~~-~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
...+|++|+||+|++.+|. -|++||+.++... +. ..++++.++++..++.+. ..+.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHH
Confidence 2346778999999998887 5999999864211 00 012344455555554320 00001233456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCH
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTH 760 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth 760 (782)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+|++.|+.
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988753 7899999999999865 999999999999999999
Q ss_pred HHHHh
Q 003981 761 FELLA 765 (782)
Q Consensus 761 ~eLl~ 765 (782)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 98864
No 298
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.7e-39 Score=373.29 Aligned_cols=215 Identities=26% Similarity=0.423 Sum_probs=175.3
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCccEEEEC---------------
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY--EPTGGRITVG--------------- 600 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly--~p~~G~I~id--------------- 600 (782)
|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 47899999996 347999999999999999999999999999999999996 7999999997
Q ss_pred --------CeeCC-------CCC---hHhhhhceEEEccc-CCCCc-ccHHHHHHcCCCCCCCCH----HHHHHHHHHhc
Q 003981 601 --------GEDLR-------TFD---KSEWARVVSIVNQE-PVLFS-VSVGENIAYGLPDENVSK----DDIIKAAKAAN 656 (782)
Q Consensus 601 --------G~di~-------~i~---~~~lR~~Ia~V~Q~-~~LF~-gTIreNI~~G~p~~~~s~----eei~~A~~~a~ 656 (782)
|.++. ..+ ...+|+.++||+|+ +.+|. -|++||+.++......+. +++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33331 111 23467889999998 57776 599999987521111222 33445555555
Q ss_pred chhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEe
Q 003981 657 AHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIA 734 (782)
Q Consensus 657 l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIa 734 (782)
+.++. .....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+||
T Consensus 158 l~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 54332 33457799999999999999999999999999999999999999999998874 378999999
Q ss_pred cChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 735 HRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 735 HRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|++..+.. ||+|++|++|+|++.|+++++..+
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99999865 999999999999999999988653
No 299
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.7e-39 Score=358.11 Aligned_cols=226 Identities=26% Similarity=0.409 Sum_probs=188.3
Q ss_pred cEEEEeeEEEcCCCCC-ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC----ccEEEECCeeCCCCChHh
Q 003981 537 DICLEDVYFSYPLRPD-VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT----GGRITVGGEDLRTFDKSE 611 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~-~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~----~G~I~idG~di~~i~~~~ 611 (782)
-++++|++..|..... ..+++||||+|.+||.+||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 3899999999975422 25999999999999999999999999999999999999988 899999999999999877
Q ss_pred hh----hceEEEcccCC-CCcc--cHHHHHH----cCCCC-CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCC
Q 003981 612 WA----RVVSIVNQEPV-LFSV--SVGENIA----YGLPD-ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLL 679 (782)
Q Consensus 612 lR----~~Ia~V~Q~~~-LF~g--TIreNI~----~G~p~-~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~L 679 (782)
+| +.|+||+|+|+ .||- ||.+-|. ...+. .+.-.++..+.++.+++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 65 57999999987 5664 6766663 22110 11123456666667776554332 3345789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEE
Q 003981 680 SGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAE 756 (782)
Q Consensus 680 SGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive 756 (782)
|||||||+.||+||..||++||+||||.|||+.++++|.+.|+++. .|.++|+|||.+..+.. ||+|+||++|+|||
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999887 58899999999999966 99999999999999
Q ss_pred ecCHHHHHhcc-CchH
Q 003981 757 LGTHFELLARK-GQYA 771 (782)
Q Consensus 757 ~Gth~eLl~~~-g~Y~ 771 (782)
.|+.++++++. -.|.
T Consensus 236 ~G~~~~i~~~p~hpYT 251 (539)
T COG1123 236 TGPTEEILSNPQHPYT 251 (539)
T ss_pred ecCHHHHHhccCCccc
Confidence 99999999874 3453
No 300
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=356.12 Aligned_cols=214 Identities=24% Similarity=0.335 Sum_probs=175.2
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.++++|++|+|+.+...++|+|+||+|++|+++||+|++|||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999754345799999999999999999999999999999999999999999999999851
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCCCHHH----HHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENVSKDD----IIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~s~ee----i~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
++.+.+.++. .|++|||.++......+.++ +.++++.+++.+++. .....||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHH
Confidence 2233444443 59999998742111233333 344566666655543 345689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhccCc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARKGQ 769 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~g~ 769 (782)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+++++...-..
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~ 236 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDE 236 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHH
Confidence 9999999999999999999999999999998874 47899999999999865 999999999999999999999876445
Q ss_pred hHHHH
Q 003981 770 YASLV 774 (782)
Q Consensus 770 Y~~L~ 774 (782)
|.+.+
T Consensus 237 ~~~~~ 241 (549)
T PRK13545 237 FLKKY 241 (549)
T ss_pred HHHHH
Confidence 54443
No 301
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.5e-39 Score=325.65 Aligned_cols=177 Identities=32% Similarity=0.488 Sum_probs=149.3
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC--CChHhhhhceEEEcccC--CCCc
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT--FDKSEWARVVSIVNQEP--VLFS 627 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~--i~~~~lR~~Ia~V~Q~~--~LF~ 627 (782)
+.++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.. .+...+++.++||+|++ .+|.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 3579999999999999999999999999999999999999999999999999852 23456788999999998 5888
Q ss_pred ccHHHHHHcCCCCCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 003981 628 VSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILD 703 (782)
Q Consensus 628 gTIreNI~~G~p~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILD 703 (782)
.|++|||.++......++ +++.++++..++.++... ....||||||||++|||||+++|+++|||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER-----------PTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999988521111222 345666666666655433 33679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhH
Q 003981 704 EATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLST 739 (782)
Q Consensus 704 EaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLst 739 (782)
|||++||+.+.+.+.+.|+++. +++|+|+|||++..
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999999999998875 47899999999864
No 302
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.6e-39 Score=325.55 Aligned_cols=190 Identities=21% Similarity=0.338 Sum_probs=162.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++++|+. +.++ ++||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999962 3445 599999999999999999999999999999999999999999999886643 35699
Q ss_pred EEcccCCC-CcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 618 IVNQEPVL-FSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 618 ~V~Q~~~L-F~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
|++|++.+ |+.|++|||.++.+.. ..++++.++++..++.++.. ..+.+||||||||++||||++++
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~ 141 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIY-NSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQ 141 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhc-ccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcC
Confidence 99998754 7899999999864321 23566777777777765433 45678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhHHHhcCeEE
Q 003981 697 APILILDEATSALDAVSERLVQDALNHL-MKGRTTLVIAHRLSTVQNAHQIA 747 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l-~~~kTvIvIaHRLsti~~aD~Ii 747 (782)
|++|||||||++||+.+.+.+.+.|+.. .+++|+|+|||+++.++.||-|.
T Consensus 142 p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 142 SDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 9999999999999999999999999753 46899999999999999999763
No 303
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-39 Score=329.93 Aligned_cols=192 Identities=33% Similarity=0.541 Sum_probs=168.4
Q ss_pred EEEEeeEEEcCCCCC------ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh
Q 003981 538 ICLEDVYFSYPLRPD------VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~------~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~ 611 (782)
++.+|++..|+.+.. ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|.|+..++
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--- 81 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--- 81 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---
Confidence 788999999975321 36899999999999999999999999999999999999999999999999987776
Q ss_pred hhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchh-HHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 612 WARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHD-FIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 612 lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~d-fI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
. ....+++.+.++.+++.+ +..+.| ..|||||||||+||
T Consensus 82 -------------------------~----~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IA 121 (268)
T COG4608 82 -------------------------K----EERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIA 121 (268)
T ss_pred -------------------------h----hHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHH
Confidence 1 123577899999999876 445444 56999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|||.-+|+++|.||||||||.-.+++|.+-|.++. .+-|.++|||.++.++. ||+|.||..|+|||.|+-+|+.++.
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 99999999999999999999999999999987775 37899999999999988 9999999999999999999998753
Q ss_pred -CchHH
Q 003981 768 -GQYAS 772 (782)
Q Consensus 768 -g~Y~~ 772 (782)
-.|-+
T Consensus 202 ~HpYTk 207 (268)
T COG4608 202 LHPYTK 207 (268)
T ss_pred CCHHHH
Confidence 34533
No 304
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.4e-38 Score=329.72 Aligned_cols=196 Identities=24% Similarity=0.297 Sum_probs=157.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
+.++|++.+|. ++++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||+++.... ..+
T Consensus 23 l~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-----~~~- 93 (224)
T cd03220 23 LGILGRKGEVG---EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG-----LGG- 93 (224)
T ss_pred hhhhhhhhhcC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhc-----ccc-
Confidence 56778888885 357999999999999999999999999999999999999999999999999764211 111
Q ss_pred EEcccCCCCcccHHHHHHcCCCCCCCCHHH----HHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDD----IIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~~~~s~ee----i~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
.+..+.|++||+.++......+.++ +.++++..++ ++..++.+ ..||||||||++||||+
T Consensus 94 -----~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~----~~LSgG~~qrv~laral 157 (224)
T cd03220 94 -----GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL-------GDFIDLPV----KTYSSGMKARLAFAIAT 157 (224)
T ss_pred -----cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------hhhhhCCh----hhCCHHHHHHHHHHHHH
Confidence 1224679999998763211123333 3333333333 33344444 56999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEec
Q 003981 694 LKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELG 758 (782)
Q Consensus 694 lr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~G 758 (782)
+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|+|++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998874 4689999999999886 59999999999999865
No 305
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-39 Score=369.69 Aligned_cols=221 Identities=23% Similarity=0.369 Sum_probs=176.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCccEEEECCeeCCCCCh-Hhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-PTGGRITVGGEDLRTFDK-SEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-p~~G~I~idG~di~~i~~-~~lR~ 614 (782)
-|+++||++.|+.+.+.++|+|+||+|++||++||+|++|||||||+++|+|+++ |++|+|.++|.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953223469999999999999999999999999999999999999 599999999999875543 44677
Q ss_pred ceEEEcccC---CCC-cccHHHHHHcCCCC--CC---CCHHHHHHHHHHhcchhHHHhCCCCccc-cccCCCCCCChhHH
Q 003981 615 VVSIVNQEP---VLF-SVSVGENIAYGLPD--EN---VSKDDIIKAAKAANAHDFIISLPQGYDT-LVGERGGLLSGGQR 684 (782)
Q Consensus 615 ~Ia~V~Q~~---~LF-~gTIreNI~~G~p~--~~---~s~eei~~A~~~a~l~dfI~~LP~GldT-~VGE~G~~LSGGQr 684 (782)
.|+||+|++ .+| +.|+.||+.++... .. .+.++.. ..++++++.+ |++. ........||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAEL-----KTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHH-----HHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 365 46999999875210 00 1111111 1122333333 2221 22344568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~e 762 (782)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|+..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998874 48999999999998865 99999999999999998877
Q ss_pred HH
Q 003981 763 LL 764 (782)
Q Consensus 763 Ll 764 (782)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 63
No 306
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.7e-38 Score=396.49 Aligned_cols=219 Identities=27% Similarity=0.434 Sum_probs=189.3
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
..|+++||++.|+++ ++++++|+||++++||+++|+|++|||||||+++|+|+++|++|+|.++|.|+.. +...+|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 359999999999632 4579999999999999999999999999999999999999999999999999975 56778999
Q ss_pred eEEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 616 VSIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 616 Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
||||+|++.+|+ -|++|||.++......+ ++++.+.++..++.+ .......+||||||||++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~-----------~~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH-----------KRNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHH
Confidence 999999999997 59999998752111122 234555555554433 33455678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|||+.+|+|||||||||+||+.+.+.+.+.|+++.+|+|+|++||.+..+.. ||||++|++|++++.|+.++|.++-
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 9999999999999999999999999999999998889999999999999865 9999999999999999999998763
No 307
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=8.5e-38 Score=329.76 Aligned_cols=225 Identities=34% Similarity=0.529 Sum_probs=188.1
Q ss_pred cEEEEeeEEEcCCCC--------CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC
Q 003981 537 DICLEDVYFSYPLRP--------DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD 608 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~--------~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~ 608 (782)
-++.+||...||-+. ...+.++|||++++||+++|||+||||||||...|+|+.+++ |+|.++|++|...+
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 478899988887432 235799999999999999999999999999999999999876 99999999999998
Q ss_pred hHh---hhhceEEEcccCCC-C--cccHHHHHHcCC----CC--CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCC
Q 003981 609 KSE---WARVVSIVNQEPVL-F--SVSVGENIAYGL----PD--ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERG 676 (782)
Q Consensus 609 ~~~---lR~~Ia~V~Q~~~L-F--~gTIreNI~~G~----p~--~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G 676 (782)
.++ +|+.+-+|+|||+= + ..||.+=|.=|. |. ..-.++++.+|++.++++.-... .-.
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~----------RYP 424 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRN----------RYP 424 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhh----------cCC
Confidence 776 57899999999982 3 257777776542 21 11235668888888888764331 223
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCE
Q 003981 677 GLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGR 753 (782)
Q Consensus 677 ~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~ 753 (782)
..+|||||||||||||++-+|++++|||||||||---.++|.+-|+++. .+-+-++|+|.|..++. ||+|+||.+|+
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gk 504 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCE
Confidence 5699999999999999999999999999999999999999999998875 46799999999999987 99999999999
Q ss_pred EEEecCHHHHHhcc-CchHH
Q 003981 754 IAELGTHFELLARK-GQYAS 772 (782)
Q Consensus 754 Ive~Gth~eLl~~~-g~Y~~ 772 (782)
|||+|+-+++.++. -.|.+
T Consensus 505 iVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 505 IVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EeeeCCHHHHhcCCCcHHHH
Confidence 99999999999874 45643
No 308
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-38 Score=318.05 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=184.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh-hhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~I 616 (782)
++.+|++.+|. +-.+++||||++++||.+||+||+||||||++|+|.|+|+|++|+|.++|+||..++++.. |.-|
T Consensus 5 L~v~~l~k~FG---Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFG---GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecC---CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 57899999996 4579999999999999999999999999999999999999999999999999999998876 4568
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCC----------CC--CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDE----------NV--SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~----------~~--s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
+--+|.+-+|+ -|+-||+..|.-.. .. .+++..+.+ -.+-+++ |++-.-.+...+||+||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A--~~~Le~v-----gL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEFV-----GLGELADRPAGNLSYGQ 154 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH--HHHHHHc-----CCchhhcchhhcCChhH
Confidence 99999999996 59999998872100 01 122222221 2222332 44555556677899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCH
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTH 760 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth 760 (782)
+.|+.|||||..+|++|+||||.++|.+.-...+.+.|+++.+ |.|+++|-|+++.+.+ ||||+||+.|+++.+|++
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence 9999999999999999999999999999888888899998874 4899999999999876 999999999999999999
Q ss_pred HHHHhc
Q 003981 761 FELLAR 766 (782)
Q Consensus 761 ~eLl~~ 766 (782)
+|..+.
T Consensus 235 ~eV~~d 240 (250)
T COG0411 235 EEVRNN 240 (250)
T ss_pred HHHhcC
Confidence 998765
No 309
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=364.86 Aligned_cols=209 Identities=17% Similarity=0.306 Sum_probs=170.2
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh-Hhhhhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~ 615 (782)
.|+++|+++.|. .+|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999999763 28999999999999999999999999999999999999999999999999876544 456788
Q ss_pred eEEEcccC---CCCc-ccHHHHHHcCCCCC--------C-CCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCC
Q 003981 616 VSIVNQEP---VLFS-VSVGENIAYGLPDE--------N-VSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGL 678 (782)
Q Consensus 616 Ia~V~Q~~---~LF~-gTIreNI~~G~p~~--------~-~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~ 678 (782)
|+||+|++ .+|. -|++||+.++.... . .+. +++.++++..++. ++-.++. ...
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~----~~~ 409 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK------CHSVNQN----ITE 409 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC------CCCccCc----ccc
Confidence 99999984 5775 59999998763100 0 011 1222333332221 0223444 456
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEE
Q 003981 679 LSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAE 756 (782)
Q Consensus 679 LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive 756 (782)
||||||||++|||||+.+|+|||||||||+||..+.+.+.+.|+++. +|+|+|+|||.+..+. .||+|++|++|+|++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 5889999999998875 599999999999999
Q ss_pred ecCH
Q 003981 757 LGTH 760 (782)
Q Consensus 757 ~Gth 760 (782)
.|+.
T Consensus 490 ~~~~ 493 (510)
T PRK09700 490 ILTN 493 (510)
T ss_pred EecC
Confidence 8865
No 310
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=4.5e-38 Score=343.02 Aligned_cols=183 Identities=36% Similarity=0.547 Sum_probs=157.5
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcc-cHHHHHHcCCCCCCCC----H
Q 003981 571 LVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSV-SVGENIAYGLPDENVS----K 645 (782)
Q Consensus 571 IVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~ 645 (782)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|+||+|++.+|.. |++|||.|+......+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 46789999999999975 9999999873211122 2
Q ss_pred HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 003981 646 DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM 725 (782)
Q Consensus 646 eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~ 725 (782)
+++.++++..++.++..+. ...||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRK-----------PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhcCC-----------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 3456667666666554433 46799999999999999999999999999999999999999999998875
Q ss_pred C--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 726 K--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 726 ~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
+ ++|+|+|||++..+.. ||+|++|++|+|++.|+++|+..+
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3 7999999999998754 999999999999999999999865
No 311
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-37 Score=305.02 Aligned_cols=215 Identities=31% Similarity=0.491 Sum_probs=185.4
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+.+|+|++-. ++.+|+++||+++|||.+||+||+|||||||+|+|+|...|++|++.++|+++.++++.++.++-+
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 77899999885 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCC-CcccHHHHHHcCC-CC---CCCCHHH--HHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 618 IVNQEPVL-FSVSVGENIAYGL-PD---ENVSKDD--IIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 618 ~V~Q~~~L-F~gTIreNI~~G~-p~---~~~s~ee--i~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
+.||+..| |.-|++|-+.||+ |. .+..+++ ..+|+..+++..|-. ..=..|||||+||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-----------R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-----------RDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-----------cchhhcCchHHHHHHHH
Confidence 99999998 9999999999995 22 1122333 456666666655422 22356999999999999
Q ss_pred HHhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHH
Q 003981 691 RALLK------NAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 691 RALlr------~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~e 762 (782)
|.|.. ++++|+|||||||||..-+..+.+..+++. +|..|++|=|.|+.. +.||||++|.+|||+..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99975 345899999999999999999988888875 588999999999965 6699999999999999999998
Q ss_pred HHhc
Q 003981 763 LLAR 766 (782)
Q Consensus 763 Ll~~ 766 (782)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8753
No 312
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.6e-38 Score=397.17 Aligned_cols=213 Identities=29% Similarity=0.424 Sum_probs=182.9
Q ss_pred cEEEEeeEEEcCCC-CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC---CCccEEEECCeeCCCCChHhh
Q 003981 537 DICLEDVYFSYPLR-PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE---PTGGRITVGGEDLRTFDKSEW 612 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~-~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~---p~~G~I~idG~di~~i~~~~l 612 (782)
.++++||+++|+.+ .++++|+|||++|++||++||+||||||||||+++|+|+.+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 47999999999632 24579999999999999999999999999999999999998 78999999999885 257
Q ss_pred hhceEEEcccCC-CCcccHHHHHHcCC----CCCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 613 ARVVSIVNQEPV-LFSVSVGENIAYGL----PDENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 613 R~~Ia~V~Q~~~-LF~gTIreNI~~G~----p~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
|+.++||+|++. +++.||||||.|+. |. +.+++ ++.++++..++ .+-.|+.||+.|.+|||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~-~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGq 906 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPK-SVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQ 906 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHH
Confidence 899999999865 56789999999852 21 23333 34555555554 3447999999999999999
Q ss_pred HHHHHHHHHhccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhHH--HhcCeEEEEeCC-EEEEec
Q 003981 684 RQRIAIARALLKNAP-ILILDEATSALDAVSERLVQDALNHL-MKGRTTLVIAHRLSTV--QNAHQIALCSDG-RIAELG 758 (782)
Q Consensus 684 rQRIaIARALlr~p~-ILILDEaTSALD~~tE~~I~~~L~~l-~~~kTvIvIaHRLsti--~~aD~IiVLd~G-~Ive~G 758 (782)
|||++|||||+.+|+ ||+||||||+||+.+...|.+.|+++ .+|+|+|+++|+++.. ..+|+|++|++| ++++.|
T Consensus 907 rqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 907 RKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred hhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEEC
Confidence 999999999999997 99999999999999999999999987 4689999999999973 679999999997 999999
Q ss_pred CHH
Q 003981 759 THF 761 (782)
Q Consensus 759 th~ 761 (782)
+.+
T Consensus 987 ~~~ 989 (1394)
T TIGR00956 987 DLG 989 (1394)
T ss_pred Ccc
Confidence 863
No 313
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-37 Score=343.02 Aligned_cols=212 Identities=35% Similarity=0.493 Sum_probs=177.9
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhh-hce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWA-RVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR-~~I 616 (782)
++++|++.+|+ ..++|+||||++.+||.+|++|.+|||||||+|.|.|.|+|++|+|.+||++..-.++.+-+ .-|
T Consensus 9 l~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 9 LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 88999999997 46899999999999999999999999999999999999999999999999999877766554 569
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCC----CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDEN----VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~----~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
+.|.||..|+. -||.|||-+|+.-.. .+..++.+.++.+-. .. .++...+++|+ +||+||||-++|||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~-~l--g~~~~~~~~v~----~LsiaqrQ~VeIAr 158 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLA-RL--GLDIDPDTLVG----DLSIAQRQMVEIAR 158 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHH-Hc--CCCCChhhhhh----hCCHHHHHHHHHHH
Confidence 99999999995 699999999964211 345566555433211 11 11123677775 59999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecC
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGT 759 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gt 759 (782)
|+..+++|+|||||||+|+..-.+.+.+.++++. +|.++|+|+|||..+.. ||||.||.||++|..+.
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999966666677787776 69999999999998855 99999999999987665
No 314
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.8e-35 Score=372.27 Aligned_cols=219 Identities=21% Similarity=0.331 Sum_probs=186.8
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++|+++.|+.+ +.++|+||||+|++||++||+|++|||||||+|+|+|+.+|++|+|.++|.++.+ +....|++|
T Consensus 1937 ~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 59999999999632 3579999999999999999999999999999999999999999999999999865 456788899
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
||+||++.++. -|++|||.+...-...+.+ .+.++++..++.++. ......||||||||++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~-----------dk~~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA-----------DRLAGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHH
Confidence 99999999886 6999999763110112222 344555556665543 2334679999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhccC
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARKG 768 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~g 768 (782)
||+.+|+||+|||||++||+.+++.+.+.|+++. +|+|+|++||.++.+.. ||||++|++|++++.|+.++|.++-|
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 9999999999999999999999999999998874 58999999999999865 99999999999999999999987644
No 315
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-37 Score=359.74 Aligned_cols=215 Identities=20% Similarity=0.331 Sum_probs=172.4
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CccEEEECCeeCCCCCh-Hhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRITVGGEDLRTFDK-SEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-~~G~I~idG~di~~i~~-~~lR~ 614 (782)
-|+++|++++|+.+.+..+|+|+||+|++||++||+|++|||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999522234699999999999999999999999999999999999995 89999999999865443 56788
Q ss_pred ceEEEcccC---CCCc-ccHHHHHHcCCCCC-----CCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCCh
Q 003981 615 VVSIVNQEP---VLFS-VSVGENIAYGLPDE-----NVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSG 681 (782)
Q Consensus 615 ~Ia~V~Q~~---~LF~-gTIreNI~~G~p~~-----~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSG 681 (782)
+|+||+|++ .+|. .|++||+.++.... .... +++.++++..++.+ .-.+. ....|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~----~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT------ASPFL----PIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC------CCccC----ccccCCH
Confidence 999999996 4665 69999998862100 0111 22333333333210 01233 3457999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecC
Q 003981 682 GQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGT 759 (782)
Q Consensus 682 GQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gt 759 (782)
|||||++|||||+.+|++|||||||++||..+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|+..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998874 47899999999998865 99999999999998775
Q ss_pred HH
Q 003981 760 HF 761 (782)
Q Consensus 760 h~ 761 (782)
-+
T Consensus 487 ~~ 488 (500)
T TIGR02633 487 NH 488 (500)
T ss_pred cc
Confidence 43
No 316
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-38 Score=307.23 Aligned_cols=222 Identities=26% Similarity=0.445 Sum_probs=184.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh-hhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~ 615 (782)
.+..+|+..+|. ..+|.+||||++++||.|++.||+|+||||.+..+.|+..|++|+|.+||.||..++...- |--
T Consensus 4 ~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 477889999996 4579999999999999999999999999999999999999999999999999999998764 446
Q ss_pred eEEEcccCCCCcc-cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 616 VSIVNQEPVLFSV-SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 616 Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
|||.||||.+|.+ ||+|||..-.. ..+.+..++-++..+++.++.+ .+...-...|..||||||.|+.|||||.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE---~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLE---IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHh---hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHh
Confidence 9999999999975 99999986532 2222222222222222222222 4555556789999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCh-hHHHhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRL-STVQNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRL-sti~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
.+|+.++||||++++||.+-..|++-++.+.. |--+++--|.. .|+.-|||.+++.+|+|...|+++|+.++
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 99999999999999999999999999988864 44555555885 68899999999999999999999999876
No 317
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-38 Score=298.39 Aligned_cols=212 Identities=30% Similarity=0.462 Sum_probs=181.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC--------
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD-------- 608 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~-------- 608 (782)
.++.+|+..+|. ...||++|||+.++|+.|.|+|.|||||||++++|.=+-.|+.|+|.++|..|+-..
T Consensus 6 ~l~v~dlHK~~G---~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcc---cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 488999999996 347999999999999999999999999999999999999999999999998775332
Q ss_pred -----hHhhhhceEEEcccCCCCc-ccHHHHHH------cCCCCCCCCHHHHHH---HHHHhcchhHHHhCCCCcccccc
Q 003981 609 -----KSEWARVVSIVNQEPVLFS-VSVGENIA------YGLPDENVSKDDIIK---AAKAANAHDFIISLPQGYDTLVG 673 (782)
Q Consensus 609 -----~~~lR~~Ia~V~Q~~~LF~-gTIreNI~------~G~p~~~~s~eei~~---A~~~a~l~dfI~~LP~GldT~VG 673 (782)
.+.+|.+.++|+|.--|++ .||-||+. +|.+ ..|.+++ -+.++++.+--..
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~----k~ea~e~Ae~~L~kVGi~ek~~~---------- 148 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVS----KAEAIERAEKYLAKVGIAEKADA---------- 148 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCC----HHHHHHHHHHHHHHhCchhhhhc----------
Confidence 4568899999999999985 89999995 3422 1233333 3455666554333
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeC
Q 003981 674 ERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSD 751 (782)
Q Consensus 674 E~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~ 751 (782)
-...|||||.||.||||||.-+|+++++||||||||++---.|.+.++++. +|||.++|||-+...++ +.+++.|.+
T Consensus 149 -YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~ 227 (256)
T COG4598 149 -YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQ 227 (256)
T ss_pred -CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeec
Confidence 347899999999999999999999999999999999998888888888875 69999999999999988 789999999
Q ss_pred CEEEEecCHHHHHhc
Q 003981 752 GRIAELGTHFELLAR 766 (782)
Q Consensus 752 G~Ive~Gth~eLl~~ 766 (782)
|.|-|+|+++++..+
T Consensus 228 G~iEE~G~P~qvf~n 242 (256)
T COG4598 228 GKIEEEGPPEQVFGN 242 (256)
T ss_pred ceecccCChHHHhcC
Confidence 999999999999865
No 318
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.7e-37 Score=318.90 Aligned_cols=194 Identities=19% Similarity=0.259 Sum_probs=160.3
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEE-ECCeeCCCCChHhhhhceEEEcccCCCCcc-cHHH
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRIT-VGGEDLRTFDKSEWARVVSIVNQEPVLFSV-SVGE 632 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~-idG~di~~i~~~~lR~~Ia~V~Q~~~LF~g-TIre 632 (782)
+|+||||+|++||++||+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|++ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 69999999999999999999999999999999999999999997 887633 14467888875 9999
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 003981 633 NIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAV 712 (782)
Q Consensus 633 NI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~ 712 (782)
||.+.......+.+++.+.+. + ...|++.+++.++ .||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~-----~-~~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY-----Q-LTQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH-----H-HhChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998752111234444443331 1 2345666666664 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhccCchH
Q 003981 713 SERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLARKGQYA 771 (782)
Q Consensus 713 tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~ 771 (782)
+++.+.+.|.+..+++|+|++||+++.+. .||+|++|++|+|++.|+-+++.+..+.|.
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 198 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFEQYQ 198 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHHH
Confidence 99999998876667889999999999986 599999999999999999999876544443
No 319
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.8e-37 Score=293.33 Aligned_cols=209 Identities=29% Similarity=0.406 Sum_probs=173.2
Q ss_pred EEEEeeEEEcCCC-CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh---h-
Q 003981 538 ICLEDVYFSYPLR-PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---W- 612 (782)
Q Consensus 538 I~f~nVsF~Y~~~-~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~---l- 612 (782)
|++++++..-++. ..-.+|++|+|.|++||.+|||||||||||||+-+|+|+-+|++|+|.+.|+++..++.+. +
T Consensus 7 i~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R 86 (228)
T COG4181 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALR 86 (228)
T ss_pred eehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhh
Confidence 7888888877643 2347999999999999999999999999999999999999999999999999999998654 3
Q ss_pred hhceEEEcccCCCC-cccHHHHHHcCCCCC-CCCHH---HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 613 ARVVSIVNQEPVLF-SVSVGENIAYGLPDE-NVSKD---DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 613 R~~Ia~V~Q~~~LF-~gTIreNI~~G~p~~-~~s~e---ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
.++|++|+|.-+|. +-|--||+.+-..-. +...+ .-.+-++.+++ .-.+..-..+||||++||+
T Consensus 87 ~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGL-----------g~Rl~HyP~qLSGGEQQRV 155 (228)
T COG4181 87 ARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGL-----------GKRLTHYPAQLSGGEQQRV 155 (228)
T ss_pred ccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCc-----------ccccccCccccCchHHHHH
Confidence 36899999999876 679999997632111 11111 12233344444 4444455578999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHhcCeEEEEeCCEEEEe
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQNAHQIALCSDGRIAEL 757 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~ 757 (782)
|||||+...|+||+=||||-+||.+|-++|.+-+-.+. .|.|.|+|||..+...+|||++-|.+|+|++.
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 99999999999999999999999999999999886554 57899999999999999999999999999863
No 320
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-37 Score=299.31 Aligned_cols=205 Identities=30% Similarity=0.457 Sum_probs=172.4
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
+..++++.+|++.+ .++|+|+|++|.+||.++++||||||||||+|+++||.+|..|+|.+||++|..-..+ =|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----ce
Confidence 55678999998653 5699999999999999999999999999999999999999999999999998876654 59
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCCCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPDENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
+|+|++-|+. -|+.||+.||..-..++.+ ...+.+..+++.|+=. ..-..||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~-----------~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH-----------KYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccc-----------cceEeecchHHHHHHHHHH
Confidence 9999999998 6999999998432223322 2334555566655421 2336799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhH-HHhcCeEEEEe--CCEEEEecC
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLST-VQNAHQIALCS--DGRIAELGT 759 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLst-i~~aD~IiVLd--~G~Ive~Gt 759 (782)
|.-+|+.|+||||.+|||+-|.+.+|+.|-++. .||-+++|||.+.. +--|++++||+ .||||+.=+
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 999999999999999999999999999987765 48999999999976 45699999997 589998644
No 321
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.4e-37 Score=323.21 Aligned_cols=196 Identities=23% Similarity=0.323 Sum_probs=159.7
Q ss_pred EEcCCCCCccceeeeeEEEe-----CCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEE
Q 003981 545 FSYPLRPDVVILNGLNLTLK-----SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIV 619 (782)
Q Consensus 545 F~Y~~~~~~~vL~~Isl~I~-----~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 619 (782)
|+|+. ....++|++|+++ +||+++|+|++|||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~--~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPT--MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCcc--cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 67873 3458899999997 68999999999999999999999999999999999995 49999
Q ss_pred cccCC-CCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC
Q 003981 620 NQEPV-LFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAP 698 (782)
Q Consensus 620 ~Q~~~-LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ 698 (782)
+|++. .|+.|++||+.+.........+...++++..++.+ ........||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQ-----------ILDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHH-----------HhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99997 47899999998652211111223344554444433 2334556799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEE--EecCHHHHHh
Q 003981 699 ILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIA--ELGTHFELLA 765 (782)
Q Consensus 699 ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Iv--e~Gth~eLl~ 765 (782)
++||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|+++..+ ..++++++.+
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 9999999999999999999999998753 7999999999999875 9999999876554 4567777653
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.2e-37 Score=359.93 Aligned_cols=211 Identities=27% Similarity=0.334 Sum_probs=172.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++||+++|++ ++++|+|+||+|++|++++|+|++|||||||+++|+|+++|++|+|.+++. ..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-----------IKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 3899999999962 347999999999999999999999999999999999999999999999762 469
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCC---------------CCC-C--------HHHHHHHHHHhcchh-------HHHhC
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPD---------------ENV-S--------KDDIIKAAKAANAHD-------FIISL 664 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~---------------~~~-s--------~eei~~A~~~a~l~d-------fI~~L 664 (782)
+||+|++.+|. .|++|||.++... ... . .+++.++++.++.++ .+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999986 5999999875210 000 1 124555555555432 22222
Q ss_pred CCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-c
Q 003981 665 PQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-A 743 (782)
Q Consensus 665 P~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-a 743 (782)
|++ .......+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++ ++|+|+|||++..+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 123455689999999999999999999999999999999999999999999886 3699999999999876 8
Q ss_pred CeEEEEeCCEEE-EecCHHHHHh
Q 003981 744 HQIALCSDGRIA-ELGTHFELLA 765 (782)
Q Consensus 744 D~IiVLd~G~Iv-e~Gth~eLl~ 765 (782)
|+|++|++|+++ ..|++++.++
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 6799988654
No 323
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=358.35 Aligned_cols=212 Identities=24% Similarity=0.391 Sum_probs=171.1
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh-Hhhhhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~ 615 (782)
-|+++||++ ++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 389999984 26999999999999999999999999999999999999999999999999987665 346778
Q ss_pred eEEEcccC---CCC-cccHHHHHHcCCCC--CC----CCHHHHHHHHHHhcchhHHHhCCCCcc-ccccCCCCCCChhHH
Q 003981 616 VSIVNQEP---VLF-SVSVGENIAYGLPD--EN----VSKDDIIKAAKAANAHDFIISLPQGYD-TLVGERGGLLSGGQR 684 (782)
Q Consensus 616 Ia~V~Q~~---~LF-~gTIreNI~~G~p~--~~----~s~eei~~A~~~a~l~dfI~~LP~Gld-T~VGE~G~~LSGGQr 684 (782)
|+||+|++ .+| +.|++||+.++... .. .+.++.. ..+.+++..+ |+. -........||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ-----QAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-----HHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 354 57999999875210 00 1111111 1122333332 221 123445567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~e 762 (782)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||++..+.. ||+|++|++|+|++.|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999999875 47899999999998855 99999999999999888766
Q ss_pred H
Q 003981 763 L 763 (782)
Q Consensus 763 L 763 (782)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 5
No 324
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.3e-37 Score=327.70 Aligned_cols=202 Identities=24% Similarity=0.326 Sum_probs=162.8
Q ss_pred EeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEE-----------ECCeeCCCCCh
Q 003981 541 EDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRIT-----------VGGEDLRTFDK 609 (782)
Q Consensus 541 ~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~-----------idG~di~~i~~ 609 (782)
.||+|+|+. ..++|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. +||+++.++..
T Consensus 4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 378999962 3469999995 999999999999999999999999999999999996 88998877644
Q ss_pred Hhhhh--ceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 610 SEWAR--VVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 610 ~~lR~--~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
+..|. .++|++|++.++..++.+||...... .-.++++.++++..++. ..+.....+||||||||+
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv 148 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK-KDERGKLDELVDQLELR-----------HVLDRNIDQLSGGELQRV 148 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhch-hHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHH
Confidence 43433 47899998887776666666543111 11234555666555543 334456678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHh-cCeEEEEeCCEEEEec
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELG 758 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~G 758 (782)
+||||++++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|+|+|+++.+.. ||+|++|+ |+|++.|
T Consensus 149 ~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 149 AIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999999988754 7999999999999985 99999995 6676544
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-37 Score=355.60 Aligned_cols=204 Identities=21% Similarity=0.297 Sum_probs=174.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+++|++ .++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++|. +.|
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999983 469
Q ss_pred EEEcccCC--CC-cccHHHHHHcCCCCCCCCHHHHHHHHHHhcch-hHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 617 SIVNQEPV--LF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAH-DFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 617 a~V~Q~~~--LF-~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~-dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
+||+|++. ++ ..|++||+.+... ....++++.++++..++. +. .......||||||||++||||
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LSgGq~qrv~la~a 452 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQ-EGDDEQAVRGTLGRLLFSQDD-----------IKKSVKVLSGGEKGRMLFGKL 452 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhcc-CCccHHHHHHHHHHcCCChhH-----------hcCcccccCHHHHHHHHHHHH
Confidence 99999974 44 3699999975321 123355677777666653 22 224456899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEE-EecCHHHHHhccC
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIA-ELGTHFELLARKG 768 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Iv-e~Gth~eLl~~~g 768 (782)
++.+|+||||||||++||+.+...+.+.|+++ +.|+|+|||.+..+.. ||+|++|++|+++ ..|+++++++.+|
T Consensus 453 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 99999999999999999999999999999986 4699999999999875 9999999999998 7899999887654
No 326
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=357.74 Aligned_cols=211 Identities=19% Similarity=0.313 Sum_probs=171.4
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh-Hhhhhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~ 615 (782)
.++++|+++. .+++|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|+++...+. ..+|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999842 38999999999999999999999999999999999999999999999999875543 456788
Q ss_pred eEEEcccCC---CC-cccHHHHHHcCCCCC----C--CCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCCh
Q 003981 616 VSIVNQEPV---LF-SVSVGENIAYGLPDE----N--VSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSG 681 (782)
Q Consensus 616 Ia~V~Q~~~---LF-~gTIreNI~~G~p~~----~--~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSG 681 (782)
|+|++|++. +| +.|+.||+.++.... . .+. +++.++++..++. ++-.++ ....|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~----~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------TPSREQ----LIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc------cCCccC----ccccCCH
Confidence 999999972 55 589999998763110 0 011 1233333333221 111233 3457999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecC
Q 003981 682 GQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGT 759 (782)
Q Consensus 682 GQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gt 759 (782)
|||||++|||||+.+|+||||||||++||..+.+.+.+.|+++. .|+|+|+|||.+..+. .||+|++|++|+|++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998875 4789999999999885 499999999999999999
Q ss_pred HHHHH
Q 003981 760 HFELL 764 (782)
Q Consensus 760 h~eLl 764 (782)
.+|..
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 88754
No 327
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-37 Score=313.83 Aligned_cols=198 Identities=29% Similarity=0.454 Sum_probs=176.7
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC----CCChHhhhhceEEEcccCCCC-cccHH
Q 003981 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR----TFDKSEWARVVSIVNQEPVLF-SVSVG 631 (782)
Q Consensus 557 ~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~----~i~~~~lR~~Ia~V~Q~~~LF-~gTIr 631 (782)
=++||+.+....+||-|+||||||||+|+|.|+..|++|+|.+||.-+. .+...--+++||||+||.-|| +-|||
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 4688999887899999999999999999999999999999999998664 455666788999999999999 58999
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 003981 632 ENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDA 711 (782)
Q Consensus 632 eNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~ 711 (782)
-|++||.- ..+.++..+++..-++.....+.| .+||||||||+||+|||+.+|++|+||||.|+||-
T Consensus 95 gNL~YG~~--~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 95 GNLRYGMW--KSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred cchhhhhc--ccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 99999964 356788888998888888887777 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 712 VSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 712 ~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
...+.+.--|+++.+ +--++.|+|.+..+ +-||+|+||++|+|...|.-+|.+++.
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 999999999888764 44588899999887 559999999999999999999998763
No 328
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-37 Score=355.09 Aligned_cols=210 Identities=22% Similarity=0.398 Sum_probs=167.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++|++|+|+ +.++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|. ..|+
T Consensus 2 l~i~~ls~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFG---AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeC---CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 78999999996 347999999999999999999999999999999999999999999999983 3599
Q ss_pred EEcccCCCCc-ccHHHHHHcCCCC--------------CCCCHHH---HHHH----------HHHhcchhHHHhCCCCcc
Q 003981 618 IVNQEPVLFS-VSVGENIAYGLPD--------------ENVSKDD---IIKA----------AKAANAHDFIISLPQGYD 669 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~p~--------------~~~s~ee---i~~A----------~~~a~l~dfI~~LP~Gld 669 (782)
||+|++.+|. -|++||+.++... +....+. +.+. -....+.+.+..+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998876 5999999875210 0000000 0000 0001122333333 332
Q ss_pred ccc-cCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEE
Q 003981 670 TLV-GERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIA 747 (782)
Q Consensus 670 T~V-GE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~Ii 747 (782)
... .....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|.+ .++|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 222 234578999999999999999999999999999999999999999999975 47999999999998865 99999
Q ss_pred EEeCCEEE-EecCHHHHHh
Q 003981 748 LCSDGRIA-ELGTHFELLA 765 (782)
Q Consensus 748 VLd~G~Iv-e~Gth~eLl~ 765 (782)
+|++|+|+ +.|++++.++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 99999994 7899998864
No 329
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.9e-37 Score=357.87 Aligned_cols=211 Identities=27% Similarity=0.320 Sum_probs=167.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++||+++|+. +.++|+||||+|++|+++||+||+|||||||+++|+|+++|++|+|.+++. ..|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 4899999999962 357999999999999999999999999999999999999999999999752 369
Q ss_pred EEEcccCCCCcc-cHHHHHHcCCCC---------------CCCC---------HHHHHHHHHHhc-------chhHHHhC
Q 003981 617 SIVNQEPVLFSV-SVGENIAYGLPD---------------ENVS---------KDDIIKAAKAAN-------AHDFIISL 664 (782)
Q Consensus 617 a~V~Q~~~LF~g-TIreNI~~G~p~---------------~~~s---------~eei~~A~~~a~-------l~dfI~~L 664 (782)
+||+|++.+|+. |++|||.++... .... .+++.++++.++ +.+.+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999875 999999875210 0000 011222222111 11122221
Q ss_pred CCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-c
Q 003981 665 PQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-A 743 (782)
Q Consensus 665 P~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-a 743 (782)
|++ ........||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||++..+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 123344679999999999999999999999999999999999999999999986 3699999999999876 9
Q ss_pred CeEEEEeCCEEE-EecCHHHHHh
Q 003981 744 HQIALCSDGRIA-ELGTHFELLA 765 (782)
Q Consensus 744 D~IiVLd~G~Iv-e~Gth~eLl~ 765 (782)
|+|++|++|+++ ..|++++..+
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999987 7899988654
No 330
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-37 Score=288.10 Aligned_cols=213 Identities=29% Similarity=0.438 Sum_probs=181.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCe--eCCCCC----hH
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE--DLRTFD----KS 610 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~--di~~i~----~~ 610 (782)
.|+++|++|.|.. ..+|.||+|+-+.|+++.+.||||+|||||++.|.=+--|.+|+..|.|. |..+.+ ..
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 3889999999973 46899999999999999999999999999999999899999999999875 333333 45
Q ss_pred hhhhceEEEcccCCCCc-ccHHHHHHc------CCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 611 EWARVVSIVNQEPVLFS-VSVGENIAY------GLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~LF~-gTIreNI~~------G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
.+|+++|+|+|+-.|+. -|+-||+-= |.+.++ -..+-.+.++.-.+.+|-++.| ..|||||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~q-a~~~a~ellkrlrl~~~adr~p-----------lhlsggq 146 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQ-ALARAEKLLKRLRLKPYADRYP-----------LHLSGGQ 146 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHH-HHHHHHHHHHHhccccccccCc-----------eecccch
Confidence 79999999999999985 799999952 322111 1233456677777888877776 5799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHH
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~ 761 (782)
.||+||||||.-+|++|++||||+|||++-..+|.+-|+++.. |-|-++|||.....++ |.+++.|++|+|||.|+++
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999999999988889899998864 8899999999998866 9999999999999999987
Q ss_pred HHH
Q 003981 762 ELL 764 (782)
Q Consensus 762 eLl 764 (782)
-.-
T Consensus 227 ~ft 229 (242)
T COG4161 227 CFT 229 (242)
T ss_pred hcc
Confidence 553
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=9.3e-37 Score=294.10 Aligned_cols=143 Identities=36% Similarity=0.552 Sum_probs=134.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
++++|++++|++ .++|+|+||++++||.++|+|++|||||||+++|+|+++|++|+|.+||. ..++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 468999999963 36999999999999999999999999999999999999999999999995 4699
Q ss_pred EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA 697 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p 697 (782)
|++| ||||||||++||||++++|
T Consensus 67 ~~~~---------------------------------------------------------lS~G~~~rv~laral~~~p 89 (144)
T cd03221 67 YFEQ---------------------------------------------------------LSGGEKMRLALAKLLLENP 89 (144)
T ss_pred EEcc---------------------------------------------------------CCHHHHHHHHHHHHHhcCC
Confidence 9999 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCE
Q 003981 698 PILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGR 753 (782)
Q Consensus 698 ~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~ 753 (782)
+++||||||++||..+...+.+.|+++ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999886 5799999999999965 89999999986
No 332
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.5e-36 Score=349.21 Aligned_cols=212 Identities=20% Similarity=0.317 Sum_probs=170.4
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh-hhhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~ 615 (782)
-|+++|+++ .+|+||||+|++|+++||+|++|||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1599999999999999999999999999999999999999999999999998776654 4568
Q ss_pred eEEEcccC---CCCc-ccHHHHHHcCC----CCCCCCHHHHHHHHHHhcchhHHHhCCCCcc-ccccCCCCCCChhHHHH
Q 003981 616 VSIVNQEP---VLFS-VSVGENIAYGL----PDENVSKDDIIKAAKAANAHDFIISLPQGYD-TLVGERGGLLSGGQRQR 686 (782)
Q Consensus 616 Ia~V~Q~~---~LF~-gTIreNI~~G~----p~~~~s~eei~~A~~~a~l~dfI~~LP~Gld-T~VGE~G~~LSGGQrQR 686 (782)
|+||+|++ .+|. -|+.||+.... +. .....+.. ..+.+++..+ |++ .........||||||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~-~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqr 411 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGF-WIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQK 411 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhcc-ccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHH
Confidence 99999986 3665 59999996420 10 00111111 1122333332 222 22334456799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 687 IaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||.+..+.+ ||+|++|++|+|+..|+.+++.
T Consensus 412 l~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 412 VLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999999999999999999999998875 48899999999999865 9999999999999999887765
No 333
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.7e-36 Score=347.89 Aligned_cols=208 Identities=26% Similarity=0.309 Sum_probs=167.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CccEEEECCeeCCC-CChHhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRITVGGEDLRT-FDKSEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-~~G~I~idG~di~~-i~~~~lR~ 614 (782)
-|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 4999999999962 4699999999999999999999999999999999998876 69999999987632 23345788
Q ss_pred ceEEEcccCCCCc---ccHHHHHHcCCCC-----CCCC---HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 615 VVSIVNQEPVLFS---VSVGENIAYGLPD-----ENVS---KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~---gTIreNI~~G~p~-----~~~s---~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
+|+||+|++.++. .|++||+.++..+ .... ++++.++++..++.+. ........|||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq 406 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQ 406 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHH
Confidence 9999999987643 4787777643110 0011 2345555555554320 1223446799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-Cc-EEEEEecChhHHHh--cCeEEEEeCCEEEEe
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK-GR-TTLVIAHRLSTVQN--AHQIALCSDGRIAEL 757 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~k-TvIvIaHRLsti~~--aD~IiVLd~G~Ive~ 757 (782)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++ |+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 407 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 407 QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999998753 44 69999999999964 899999999999874
No 334
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=321.61 Aligned_cols=209 Identities=30% Similarity=0.499 Sum_probs=173.4
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh-Hhhhhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~ 615 (782)
.|+++|++..|| +..+++||||+|++||.-|+.|++|+|||||++.|.|+|+|++|+|++||++++--++ +..|.-
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 389999999997 4678999999999999999999999999999999999999999999999999876654 556778
Q ss_pred eEEEcccCCCCc-ccHHHHHHcCCCCC---CCCHHHHHHHHHHhcchhHHH--hCCCCccccccCCCCCCChhHHHHHHH
Q 003981 616 VSIVNQEPVLFS-VSVGENIAYGLPDE---NVSKDDIIKAAKAANAHDFII--SLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 616 Ia~V~Q~~~LF~-gTIreNI~~G~p~~---~~s~eei~~A~~~a~l~dfI~--~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
||+|.|+..|++ -|+.|||.+|.+.. ..+..+..+-+ .+..+ .||--.|..| ..||-|||||+.|
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i-----~~l~~~yGl~vdp~~~V----~dLsVG~qQRVEI 151 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI-----KELSERYGLPVDPDAKV----ADLSVGEQQRVEI 151 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHH-----HHHHHHhCCCCCcccee----ecCCcchhHHHHH
Confidence 999999999996 59999999997531 12333322222 12112 2333444444 5699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEe
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAEL 757 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~ 757 (782)
-+|||++|+|||||||||-|-+.--+.+.+.++++. .|+|+|+|||+|..++. ||+|-||.+|+++..
T Consensus 152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt 221 (501)
T COG3845 152 LKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221 (501)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee
Confidence 999999999999999999999966667777787775 69999999999999877 999999999998754
No 335
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=341.03 Aligned_cols=213 Identities=21% Similarity=0.315 Sum_probs=168.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChH-hhhhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS-EWARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~-~lR~~ 615 (782)
.|+++|+++.|. ++|+||||+|++||++||+|++|||||||+++|+|+.+|++|+|.++|.++...+.. .+|+.
T Consensus 250 ~i~~~~l~~~~~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLRQ-----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCcccccC-----cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 489999999852 489999999999999999999999999999999999999999999999999877654 35777
Q ss_pred eEEEcccCC---CCc-ccHHHH-----HHcCCCCCC-CCHHHHHHHHHHhcchhHHHhCCCCcc-ccccCCCCCCChhHH
Q 003981 616 VSIVNQEPV---LFS-VSVGEN-----IAYGLPDEN-VSKDDIIKAAKAANAHDFIISLPQGYD-TLVGERGGLLSGGQR 684 (782)
Q Consensus 616 Ia~V~Q~~~---LF~-gTIreN-----I~~G~p~~~-~s~eei~~A~~~a~l~dfI~~LP~Gld-T~VGE~G~~LSGGQr 684 (782)
++|++|++. +|. .|+.+| +.+..+... .+.++..+ .+.+++..+ |+. -........||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHH
Confidence 999999963 565 577766 432211000 11122211 122333333 221 012444567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~ 761 (782)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||.++.+. .||+|++|++|+++..++.+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999998764 5899999999999885 49999999999999887654
No 336
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-35 Score=287.33 Aligned_cols=154 Identities=40% Similarity=0.663 Sum_probs=145.3
Q ss_pred EEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEE
Q 003981 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIV 619 (782)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 619 (782)
++|++|.|++ .++++++||+|++|+.++|+|++|||||||+++|+|+++|++|+|+++|.++.+.....+++.++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6899999973 3699999999999999999999999999999999999999999999999999888788889999999
Q ss_pred cccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 003981 620 NQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPI 699 (782)
Q Consensus 620 ~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~I 699 (782)
+| ||||||||++||||++.+|++
T Consensus 79 ~q---------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 79 PQ---------------------------------------------------------LSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred ee---------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 99 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHh-cCeEEEEeCCE
Q 003981 700 LILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQN-AHQIALCSDGR 753 (782)
Q Consensus 700 LILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~-aD~IiVLd~G~ 753 (782)
+||||||++||.++...+.+.|+++.+ ++|+|++||+++.+.+ ||+|++|++|+
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999988754 5899999999999988 59999999985
No 337
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.5e-35 Score=368.12 Aligned_cols=215 Identities=28% Similarity=0.412 Sum_probs=180.4
Q ss_pred ccEEEEeeEEEcCCC----------CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CccEEEECCee
Q 003981 536 GDICLEDVYFSYPLR----------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP--TGGRITVGGED 603 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~----------~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p--~~G~I~idG~d 603 (782)
..++|+||++..+.. ....+|+|||++++||+++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 369999999998531 123699999999999999999999999999999999999873 78999999987
Q ss_pred CCCCChHhhhhceEEEcccCCCCc-ccHHHHHHcCC----CCCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccC
Q 003981 604 LRTFDKSEWARVVSIVNQEPVLFS-VSVGENIAYGL----PDENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGE 674 (782)
Q Consensus 604 i~~i~~~~lR~~Ia~V~Q~~~LF~-gTIreNI~~G~----p~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE 674 (782)
++ ...+|+.++||+|++.++. .||+|||.|+. |. +.+++ .+.++++..++.+ -.|+.+|.
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~-~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~ 1014 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPK-EVSKEEKMMFVDEVMELVELDN-------LKDAIVGL 1014 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHCCChh-------HhCCccCC
Confidence 64 3457888999999988775 69999998752 21 23333 2556666666544 34788886
Q ss_pred CC-CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhH--HHhcCeEEEEe
Q 003981 675 RG-GLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLST--VQNAHQIALCS 750 (782)
Q Consensus 675 ~G-~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLst--i~~aD~IiVLd 750 (782)
.+ ..||||||||++|||||+.+|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|+++. ...+|+|++|+
T Consensus 1015 ~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred CCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence 65 6799999999999999999999999999999999999999999999875 48999999999984 47799999999
Q ss_pred C-CEEEEecCHH
Q 003981 751 D-GRIAELGTHF 761 (782)
Q Consensus 751 ~-G~Ive~Gth~ 761 (782)
+ |+++..|+.+
T Consensus 1095 ~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1095 RGGQVIYSGPLG 1106 (1470)
T ss_pred CCCEEEEECCcc
Confidence 6 8999999853
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-34 Score=339.05 Aligned_cols=204 Identities=26% Similarity=0.363 Sum_probs=166.1
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++||+++|+ +.++|+||||+|++|++++|+|++|||||||+++|+|+++|++|+|.+++. + .|
T Consensus 324 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFG---DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET-V----------KL 389 (556)
T ss_pred EEEEEeEEEEEC---CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-e----------EE
Confidence 499999999996 346999999999999999999999999999999999999999999999652 1 49
Q ss_pred EEEcccC-CCCc-ccHHHHHHcCCCCCC--CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 617 SIVNQEP-VLFS-VSVGENIAYGLPDEN--VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 617 a~V~Q~~-~LF~-gTIreNI~~G~p~~~--~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
+||+|++ .++. -|++||+.++..... ..+++..++++..++.+. ........||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG----------DQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence 9999997 5654 599999988632111 112333344444333210 1223345799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeC-CEEEE-ecCHHHHHhc
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSD-GRIAE-LGTHFELLAR 766 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~-G~Ive-~Gth~eLl~~ 766 (782)
++.+|++|||||||++||+.+...+.+.|+++ + .|+|+|||.+..+.. ||+|++|++ |++++ .|+++++++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999999999999999999999987 3 499999999998865 999999996 88874 7899887654
No 339
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.3e-35 Score=291.03 Aligned_cols=146 Identities=32% Similarity=0.398 Sum_probs=133.0
Q ss_pred EeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEc
Q 003981 541 EDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVN 620 (782)
Q Consensus 541 ~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~ 620 (782)
.||+++|+ +.++++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~~---~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYG---VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEEC---CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 48899996 35789984 9999999999999999999999999999999999999999973 88999
Q ss_pred ccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 003981 621 QEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPIL 700 (782)
Q Consensus 621 Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~IL 700 (782)
|++. ||||||||++||||++.+|+++
T Consensus 68 q~~~------------------------------------------------------LSgGq~qrv~laral~~~p~ll 93 (177)
T cd03222 68 QYID------------------------------------------------------LSGGELQRVAIAAALLRNATFY 93 (177)
T ss_pred ccCC------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 8653 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecChhHHHh-cCeEEEEeCCEEEE
Q 003981 701 ILDEATSALDAVSERLVQDALNHLM-K-GRTTLVIAHRLSTVQN-AHQIALCSDGRIAE 756 (782)
Q Consensus 701 ILDEaTSALD~~tE~~I~~~L~~l~-~-~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive 756 (782)
||||||++||..+.+.+.+.|+++. + ++|+|+|||++..+.. ||+|++|+++-.+.
T Consensus 94 lLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~ 152 (177)
T cd03222 94 LFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVY 152 (177)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccc
Confidence 9999999999999999999998875 3 4899999999999885 99999999887663
No 340
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.8e-34 Score=336.92 Aligned_cols=204 Identities=25% Similarity=0.359 Sum_probs=165.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++|++++|+ +.++|+||||+|++|++++|+||+|||||||+++|+|+.+|++|+|.+++. + .|
T Consensus 322 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~-~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFG---DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET-V----------KL 387 (552)
T ss_pred EEEEeeEEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc-e----------EE
Confidence 499999999996 346999999999999999999999999999999999999999999999652 1 59
Q ss_pred EEEcccCC-CCc-ccHHHHHHcCCCCCCCC--HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 617 SIVNQEPV-LFS-VSVGENIAYGLPDENVS--KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 617 a~V~Q~~~-LF~-gTIreNI~~G~p~~~~s--~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
+||+|++. +|. .|++||+.++.+..... +++..++++..++.+ . ........||||||||++||||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~---~~~~~~~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG-------S---DQQKKVGQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCCh-------h---HhcCchhhCCHHHHHHHHHHHH
Confidence 99999973 554 69999999874211111 222333333333321 0 1233456799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeC-CEEE-EecCHHHHHhc
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSD-GRIA-ELGTHFELLAR 766 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~-G~Iv-e~Gth~eLl~~ 766 (782)
|+.+|+||||||||++||..+.+.+.+.|+++ . .|+|+|||.+..+.. ||+|++|++ |+++ ..|++++..+.
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 99999999999999999999999999999987 3 499999999998875 999999997 6876 46888877543
No 341
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.9e-34 Score=342.15 Aligned_cols=201 Identities=23% Similarity=0.343 Sum_probs=167.2
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++||+|+|++ +.++|+|+||+|++|++++|+||+|||||||+++|+|+.+|++|+|.+++. ..|
T Consensus 508 ~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-----------~~i 574 (718)
T PLN03073 508 IISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-----------VRM 574 (718)
T ss_pred eEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-----------eeE
Confidence 4999999999963 346999999999999999999999999999999999999999999998762 369
Q ss_pred EEEcccCCCCcccHHHHHHcC--CCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 617 SIVNQEPVLFSVSVGENIAYG--LPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 617 a~V~Q~~~LF~gTIreNI~~G--~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+|++|++. ..-++.+|+.+. ...+..+++++.++++..++.+... ......||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHHh
Confidence 99999873 334566664321 1011345778888888877753221 2235689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEE-EecCHHHH
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIA-ELGTHFEL 763 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Iv-e~Gth~eL 763 (782)
.+|++|||||||++||..+...+.+.|.+. + .|+|+|||++..+.. ||+|++|++|+|+ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999999875 3 599999999999875 9999999999998 57888764
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.7e-34 Score=341.91 Aligned_cols=203 Identities=27% Similarity=0.412 Sum_probs=165.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++||+++|+ +.++|+|+||+|++|+++||+|++|||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEEC---CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 489999999996 346999999999999999999999999999999999999999999999 4432 49
Q ss_pred EEEcccC-CCCc-ccHHHHHHcCCCCCCCC--HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 617 SIVNQEP-VLFS-VSVGENIAYGLPDENVS--KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 617 a~V~Q~~-~LF~-gTIreNI~~G~p~~~~s--~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
+|++|++ .++. .|+.||+.++.+....+ .+++.+.++..++.+ +-.++.+ ..||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTPV----KALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhChh----hhCCHHHHHHHHHHHH
Confidence 9999986 4655 59999999864311111 233444443333321 1123333 5699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEe-CCEEEE-ecCHHHHHh
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCS-DGRIAE-LGTHFELLA 765 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd-~G~Ive-~Gth~eLl~ 765 (782)
++.+|++|||||||++||..+...+.+.|+++ +.|+|+|||.+..+.. ||+|++|+ +|+|++ .|+|++-+.
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999886 4699999999998865 99999998 899987 588887643
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=339.74 Aligned_cols=200 Identities=25% Similarity=0.340 Sum_probs=166.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++||+++|+ +.++|+|+||+|++|+++||+||+|||||||+++|+|+++|++|+|.+++. .+|
T Consensus 312 ~l~~~~l~~~y~---~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYG---DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeC---CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 489999999996 347999999999999999999999999999999999999999999999742 259
Q ss_pred EEEcccC--CCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 617 SIVNQEP--VLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 617 a~V~Q~~--~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
+|++|++ .++. .|+.+|+.-..+ ...++++.++++..++.+. -.+. ....||||||||++||||+
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~~l~~~------~~~~----~~~~LSgGekqRl~La~~l 445 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAP--QELEQKLRDYLGGFGFQGD------KVTE----ETRRFSGGEKARLVLALIV 445 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCc--hhhHHHHHHHHHHcCCChh------HhcC----chhhCCHHHHHHHHHHHHH
Confidence 9999985 3443 488998853212 2334556666655555311 1122 3457999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEE-EecCHHHHH
Q 003981 694 LKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIA-ELGTHFELL 764 (782)
Q Consensus 694 lr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Iv-e~Gth~eLl 764 (782)
+.+|+||||||||++||..+...+.+.|+++ . .|+|+|||++..+.. ||+|++|++|+|+ ..|++++..
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999987 4 599999999999865 9999999999998 689998874
No 344
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.4e-34 Score=285.50 Aligned_cols=161 Identities=25% Similarity=0.385 Sum_probs=132.9
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHH
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIr 631 (782)
..++|+|+||++++|++++|+||||||||||+++++ +++|+|.++|.. ... .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 457899999999999999999999999999999996 369999998862 221 2445888887
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC--CCEEEEeCCCCCC
Q 003981 632 ENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN--APILILDEATSAL 709 (782)
Q Consensus 632 eNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~--p~ILILDEaTSAL 709 (782)
.++++..++ +.. ....+...||||||||++||||++++ |+++||||||++|
T Consensus 68 -----------------~~~l~~~~L---------~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 -----------------LQFLIDVGL---------GYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred -----------------HHHHHHcCC---------Ccc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 123333322 211 24567789999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEEeC------CEEEEec
Q 003981 710 DAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALCSD------GRIAELG 758 (782)
Q Consensus 710 D~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~------G~Ive~G 758 (782)
|.++.+.+.+.|+++. .++|+|+|||++..++.||+|++|++ |++||.|
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 176 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCCCcEEEecC
Confidence 9999999999998875 58999999999999999999999965 5556544
No 345
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-35 Score=282.10 Aligned_cols=215 Identities=29% Similarity=0.487 Sum_probs=188.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+.+|. ++.+|+|+|++|++|+.++|+||+|+|||||+..+.|+.++++|+|++||.++.+.+-++|.+.++
T Consensus 2 I~i~nv~K~y~---~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYG---TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhC---CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 78899999996 468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCc-ccHHHHHHcCC-CCC----CC-CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 618 IVNQEPVLFS-VSVGENIAYGL-PDE----NV-SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 618 ~V~Q~~~LF~-gTIreNI~~G~-p~~----~~-s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
+.-|+.++-. -||||=+.||+ |++ .. +..-|.+|++--++.+. .+.|- ..||||||||--||
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l----~dryL-------d~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDL----SDRYL-------DELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccch----HHHhH-------Hhcccchhhhhhhh
Confidence 9999999864 69999999995 221 11 22346677776666553 22222 35999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
-.+.+|.+.++||||..+||-.-...+++.|+++.+ +||+|+|-|...... .+|+|+-|++|+|+.+|+++|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999999999999999999999888888888887753 899999999999874 5999999999999999999999865
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.9e-34 Score=334.86 Aligned_cols=192 Identities=23% Similarity=0.293 Sum_probs=162.8
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-++++|++++|++ ..|+++||+|++||++||+|++|||||||+++|+|+.+|++|+|.++ + .|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eE
Confidence 4899999999962 24999999999999999999999999999999999999999999986 1 49
Q ss_pred EEEcccCCC-CcccHHHHHHcCCCCCCCC-HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 617 SIVNQEPVL-FSVSVGENIAYGLPDENVS-KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 617 a~V~Q~~~L-F~gTIreNI~~G~p~~~~s-~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+|++|++.+ ++.|++||+.++.. ... .+.+.++++..++.+.. + ..-..||||||||++|||||+
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~--~~~~~~~~~~~L~~l~l~~~~-------~----~~~~~LSGGe~QRvaiAraL~ 469 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITD--DLGSSYYKSEIIKPLQLERLL-------D----KNVKDLSGGELQRVAIAACLS 469 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhh--hcChHHHHHHHHHHCCCHHHH-------h----CCcccCCHHHHHHHHHHHHHh
Confidence 999999875 56899999998632 122 33455666666665432 2 334579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecC
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGT 759 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gt 759 (782)
++|+||||||||++||..+...+.+.|+++.+ ++|+|+|||.+..+.. ||+|++|++ ++...|+
T Consensus 470 ~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 470 RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999999998853 7899999999998765 999999975 8877776
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.7e-34 Score=363.06 Aligned_cols=210 Identities=25% Similarity=0.313 Sum_probs=171.8
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCC----CCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCc
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY----EPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS 627 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly----~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~ 627 (782)
.+++|+|||+++++||.+||+||||||||||+|+|+|.. .|.+|+|.+||+++.+.+ ..+|+.++||+|++.+|.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCC
Confidence 356999999999999999999999999999999999986 579999999999887654 456788999999988886
Q ss_pred -ccHHHHHHcCC----CCC---CCCHHHHHHHHHHhcchhHHHhCCCCccccccC-CCCCCChhHHHHHHHHHHhccCCC
Q 003981 628 -VSVGENIAYGL----PDE---NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGE-RGGLLSGGQRQRIAIARALLKNAP 698 (782)
Q Consensus 628 -gTIreNI~~G~----p~~---~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE-~G~~LSGGQrQRIaIARALlr~p~ 698 (782)
-|++|||.|+. |.. +.+.++..+.....-++. ..|.+-.||.||+ ....||||||||++|||||+.+|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~ 229 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMAT--YGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAK 229 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHH--cCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCC
Confidence 59999998852 110 133333222111111111 1355557899986 456799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChh-HH-HhcCeEEEEeCCEEEEecCHHHHH
Q 003981 699 ILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLS-TV-QNAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 699 ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLs-ti-~~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
||+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++ .+ ..+|+|++|++|+++..|+.+++.
T Consensus 230 vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 230 IQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999999863 799999999974 44 569999999999999999999884
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=331.67 Aligned_cols=210 Identities=24% Similarity=0.323 Sum_probs=161.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|+ +.++|+||||+|++|+++|||||+|||||||+++|+|+++|++|+|.++|.. .|+
T Consensus 2 i~i~nls~~~g---~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRG---VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeC---CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 78999999996 3479999999999999999999999999999999999999999999999852 389
Q ss_pred EEcccCCCCcccHHHHHHcCCCC-CCCCH-----------HHHHHHHH----------HhcchhHHHhCCCCcc-ccccC
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPD-ENVSK-----------DDIIKAAK----------AANAHDFIISLPQGYD-TLVGE 674 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~-~~~s~-----------eei~~A~~----------~a~l~dfI~~LP~Gld-T~VGE 674 (782)
|++|++..+..|+.+++.-+... ...+. ..+..... ...+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 99997766666776665421000 00000 00000000 01122223332 332 12233
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCE
Q 003981 675 RGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGR 753 (782)
Q Consensus 675 ~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~ 753 (782)
.-..||||||||++|||||+.+|+||||||||++||..+...+.+.|+++ +.|+|+|||+...+.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 45679999999999999999999999999999999999999999999885 5799999999999865 99999999999
Q ss_pred EEE-ecCHHHHHh
Q 003981 754 IAE-LGTHFELLA 765 (782)
Q Consensus 754 Ive-~Gth~eLl~ 765 (782)
|+. .|++++...
T Consensus 224 i~~~~g~~~~~~~ 236 (638)
T PRK10636 224 LFEYTGNYSSFEV 236 (638)
T ss_pred EEEecCCHHHHHH
Confidence 974 788887664
No 349
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=8.5e-34 Score=357.38 Aligned_cols=211 Identities=24% Similarity=0.376 Sum_probs=172.0
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCCChHhhhhceEEEcccCCCCc-
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS- 627 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~---~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~- 627 (782)
...+|+|||+.|+|||.++|+||+|||||||+++|+|.++|+ +|+|++||+++.+.. .|+.++||+|++.+|.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCc
Confidence 356999999999999999999999999999999999999998 999999999987654 3788999999987775
Q ss_pred ccHHHHHHcCCC----CC------CCCH----------HHH---HHHHHHhc------chhHHH--hCCCCccccccCCC
Q 003981 628 VSVGENIAYGLP----DE------NVSK----------DDI---IKAAKAAN------AHDFII--SLPQGYDTLVGERG 676 (782)
Q Consensus 628 gTIreNI~~G~p----~~------~~s~----------eei---~~A~~~a~------l~dfI~--~LP~GldT~VGE~G 676 (782)
-||+|||.|+.. .. +.+. +++ .+++...+ .++.++ .|.+-.||.||+..
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 699999988521 00 0111 111 12221111 122222 45566789998654
Q ss_pred -CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCh--hHHHhcCeEEEEeC
Q 003981 677 -GLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRL--STVQNAHQIALCSD 751 (782)
Q Consensus 677 -~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRL--sti~~aD~IiVLd~ 751 (782)
..||||||||++|||||+.+|++|+|||||++||+.+...|.+.|+++. .|+|+|+++|++ .+..-+|+|++|++
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~ 413 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE 413 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC
Confidence 5799999999999999999999999999999999999999999999985 488999999997 45577999999999
Q ss_pred CEEEEecCHHHHHh
Q 003981 752 GRIAELGTHFELLA 765 (782)
Q Consensus 752 G~Ive~Gth~eLl~ 765 (782)
|+|+..|+.+++.+
T Consensus 414 G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 414 GQIVYQGPRDHILE 427 (1470)
T ss_pred ceEEEeCCHHHHHH
Confidence 99999999998873
No 350
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-33 Score=295.85 Aligned_cols=229 Identities=26% Similarity=0.392 Sum_probs=188.1
Q ss_pred EEEEeeEEEcCC-CCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----CccEEEECCeeCCCCChHh
Q 003981 538 ICLEDVYFSYPL-RPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTFDKSE 611 (782)
Q Consensus 538 I~f~nVsF~Y~~-~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----~~G~I~idG~di~~i~~~~ 611 (782)
++++|++.+|.. +....+++||||+|.+||++|+||+||||||--++.++|+.+- .+|+|+++|.|+-..+...
T Consensus 7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence 778888877752 2356799999999999999999999999999999999999864 4799999999999999999
Q ss_pred hhh----ceEEEcccCCC-Cc--ccH----HHHHHcCCC-CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCC
Q 003981 612 WAR----VVSIVNQEPVL-FS--VSV----GENIAYGLP-DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLL 679 (782)
Q Consensus 612 lR~----~Ia~V~Q~~~L-F~--gTI----reNI~~G~p-~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~L 679 (782)
+|. .|++++|||.- .| -|| .|-|.+-+. ...+-.+++.+.++.+++.+-=. .+..-...|
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPHeL 158 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPHEL 158 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCccc
Confidence 886 79999999963 22 244 444444321 11234567778888888765311 223345779
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEE
Q 003981 680 SGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAE 756 (782)
Q Consensus 680 SGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive 756 (782)
|||||||+-||-||..+|++||=||||.|||....++|.+-|+++. .|..+++|||.|+.++. ||+|.||.+|+|||
T Consensus 159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 9999999999999999999999999999999999999999998875 38899999999999977 99999999999999
Q ss_pred ecCHHHHHhcc-CchHHHH
Q 003981 757 LGTHFELLARK-GQYASLV 774 (782)
Q Consensus 757 ~Gth~eLl~~~-g~Y~~L~ 774 (782)
.|+-++|.+.. ..|.+..
T Consensus 239 ~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 239 TGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred cCcHHHHhhCCCChHHHHH
Confidence 99999998764 5565543
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6.3e-33 Score=328.41 Aligned_cols=209 Identities=27% Similarity=0.412 Sum_probs=159.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|+ +.++|+||||+|++|+++|||||+|||||||+++|+|+++|++|+|.++|.. .++
T Consensus 4 l~i~~ls~~~~---~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFS---DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEeeEEEEeC---CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 88999999996 3479999999999999999999999999999999999999999999998741 267
Q ss_pred EEcccCCC-CcccHHHHHHcCCCC----------------CCCCHHHHHHHHH-------------HhcchhHHHhCCCC
Q 003981 618 IVNQEPVL-FSVSVGENIAYGLPD----------------ENVSKDDIIKAAK-------------AANAHDFIISLPQG 667 (782)
Q Consensus 618 ~V~Q~~~L-F~gTIreNI~~G~p~----------------~~~s~eei~~A~~-------------~a~l~dfI~~LP~G 667 (782)
+++|++.. ..+++.+++..+... .+..++.+....+ ...+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 88887643 236777765422100 0000111100000 01122223332 2
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeE
Q 003981 668 YDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQI 746 (782)
Q Consensus 668 ldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~I 746 (782)
++ ....-..||||||||++|||||+.+|+||||||||++||..+...+.+.|+++ +.|+|+|||+...+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 21 12344679999999999999999999999999999999999999999999887 3699999999999865 9999
Q ss_pred EEEeCCEEEE-ecCHHHHHhc
Q 003981 747 ALCSDGRIAE-LGTHFELLAR 766 (782)
Q Consensus 747 iVLd~G~Ive-~Gth~eLl~~ 766 (782)
++|++|+|+. .|++++.++.
T Consensus 224 ~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred EEEECCEEEEecCCHHHHHHH
Confidence 9999999985 5998876543
No 352
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=276.29 Aligned_cols=207 Identities=28% Similarity=0.458 Sum_probs=175.4
Q ss_pred CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCC--C-c
Q 003981 551 PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVL--F-S 627 (782)
Q Consensus 551 ~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~L--F-~ 627 (782)
.++++|+++||+|+.|++|-|+|.+|||||||++.|+|...|++|+|+|||+|+..++...-...++=|+|||-. | +
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999974 4 4
Q ss_pred ccHHHHHHcCCCCC-CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC
Q 003981 628 VSVGENIAYGLPDE-NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEAT 706 (782)
Q Consensus 628 gTIreNI~~G~p~~-~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaT 706 (782)
-||.||+.++.-.. .-....-...-+.....+-+..+|.|++-.++.+-.-|||||||-|+|+-|.++.|+||+|||=|
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT 176 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence 69999999873210 00011111222334455668899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhH-HHhcCeEEEEeCCEEEEe
Q 003981 707 SALDAVSERLVQDALNHLM--KGRTTLVIAHRLST-VQNAHQIALCSDGRIAEL 757 (782)
Q Consensus 707 SALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLst-i~~aD~IiVLd~G~Ive~ 757 (782)
+||||.+...|.+.=.+.- .+-|+++|||.+.. +..-+|.+||++|+||-.
T Consensus 177 AALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 9999988888887655443 35699999999975 566899999999999864
No 353
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-32 Score=276.62 Aligned_cols=212 Identities=27% Similarity=0.394 Sum_probs=173.8
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh-Hhhhhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~ 615 (782)
-|+|+||++.|. ++++|+|||++|+|||.-+|+|++|||||||++++.+.+.|++|.+.+-|+.....+. .++|++
T Consensus 31 li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 499999999996 5689999999999999999999999999999999999999999999999999988887 999999
Q ss_pred eEEEcccC---CCCcccHHHHHHcC------CCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHH
Q 003981 616 VSIVNQEP---VLFSVSVGENIAYG------LPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQR 686 (782)
Q Consensus 616 Ia~V~Q~~---~LF~gTIreNI~~G------~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQR 686 (782)
||+|+-+- +.=+.+++|=+.=| ......++++..+|-... +.+ |.....+..=..||-|||||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~ll------e~~--g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLL------ELL--GAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHH------HHc--chhhhccCchhhcCHhHHHH
Confidence 99998543 33356777776433 221245666554443221 111 33333344456799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecC
Q 003981 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK---GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGT 759 (782)
Q Consensus 687 IaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~---~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gt 759 (782)
+-|||||+++|++|||||||.+||....+.+.+.|.++.. +.|+|+|||+...+.. .++++.+++|+|+.+|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999988763 5689999999988754 79999999999998874
No 354
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.1e-33 Score=326.27 Aligned_cols=192 Identities=28% Similarity=0.375 Sum_probs=159.2
Q ss_pred eeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEE-----------ECCeeCCCCChH
Q 003981 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRIT-----------VGGEDLRTFDKS 610 (782)
Q Consensus 542 nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~-----------idG~di~~i~~~ 610 (782)
+++++|.. +..+|++++ ++++||++|||||+|||||||+++|+|+++|++|+|. ++|.++.++..+
T Consensus 78 ~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 48999962 346899999 9999999999999999999999999999999999998 999988655321
Q ss_pred h--hhhc----eEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 611 E--WARV----VSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 611 ~--lR~~----Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
- .+.. +.|++|.|.+|.+|++|||.+. + ..+++.++++..++.+. .|+. -.+||||||
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~--~---~~~~~~~~l~~l~l~~~-------~~~~----~~~LSgGe~ 218 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV--D---ERGKLDEVVERLGLENI-------LDRD----ISELSGGEL 218 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhh--h---HHHHHHHHHHHcCCchh-------hcCC----hhhCCHHHH
Confidence 1 1122 4456667788899999999853 1 23566777766665433 2333 356999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCC
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDG 752 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G 752 (782)
||++|||||+++|+|||||||||+||..+...+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|
T Consensus 219 qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999998668999999999999865 9999999873
No 355
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-32 Score=263.11 Aligned_cols=227 Identities=23% Similarity=0.403 Sum_probs=181.7
Q ss_pred EEEEeeEEEcCC------CCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh
Q 003981 538 ICLEDVYFSYPL------RPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611 (782)
Q Consensus 538 I~f~nVsF~Y~~------~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~ 611 (782)
++++|++..+.. +....+.+.|||++++|+++||+|.+|||||||++.|.|..+|++|+|++||+++.-=+-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 455666543321 12345789999999999999999999999999999999999999999999999998777777
Q ss_pred hhhceEEEcccCC-CCc----------ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCC
Q 003981 612 WARVVSIVNQEPV-LFS----------VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLS 680 (782)
Q Consensus 612 lR~~Ia~V~Q~~~-LF~----------gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LS 680 (782)
-.++|-+++|||. -|| +.++-|-.+- ++...++|.+-++.+++. |+--+- .-..||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~---~~~R~~~i~~TL~~VGL~------Pdhan~----~~~~la 151 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLE---PEQRRKQIFETLRMVGLL------PDHANY----YPHMLA 151 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCC---hHHHHHHHHHHHHHhccC------cccccc----chhhcC
Confidence 7789999999985 233 3333333332 245677899999998885 433222 246799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEe
Q 003981 681 GGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAEL 757 (782)
Q Consensus 681 GGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~ 757 (782)
-|||||+|+||||+-+|+|+|-|||..+||..-..++.+-.-++. .|-.-|.|+..+-.+++ +|+|+||++|++||.
T Consensus 152 ~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred chhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec
Confidence 999999999999999999999999999999988888777654443 47889999999999998 999999999999999
Q ss_pred cCHHHHHhc--cCchHHHHHHh
Q 003981 758 GTHFELLAR--KGQYASLVCTQ 777 (782)
Q Consensus 758 Gth~eLl~~--~g~Y~~L~~~q 777 (782)
|+..|+++. ...-++|++..
T Consensus 232 G~t~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 232 GSTADVLASPLHELTKRLIESH 253 (267)
T ss_pred CChhhhhcCCccHHHHHHHHHH
Confidence 999999875 34556666543
No 356
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-32 Score=252.89 Aligned_cols=194 Identities=29% Similarity=0.494 Sum_probs=164.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCCChHhhhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~---~G~I~idG~di~~i~~~~lR~ 614 (782)
++++||+.+.+ +...|-||||+|.+||.+-+.||||||||||+.-+.|...+. +|++.+|++++..++.+ ++
T Consensus 3 l~l~nvsl~l~---g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 3 LCLKNVSLRLP---GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred eeeeeeeecCC---CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 67899998886 457899999999999999999999999999999999999875 89999999999988754 68
Q ss_pred ceEEEcccCCCCc-ccHHHHHHcCCCCC---CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 615 VVSIVNQEPVLFS-VSVGENIAYGLPDE---NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~-gTIreNI~~G~p~~---~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
+||+.+||++||. -+|-+||.|..|.+ ++.......|++..+++.+..+-| .+||||||.|+|+-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHH
Confidence 9999999999995 69999999987742 234555677788888888777665 57999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hhc-CCcEEEEEecChhHHHhcCeEE
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALN-HLM-KGRTTLVIAHRLSTVQNAHQIA 747 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~-~l~-~~kTvIvIaHRLsti~~aD~Ii 747 (782)
|+|+..|+.|+||||.|.||..-+.++.+-.- +.. .+--+|.|||.+..+..-.+++
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVi 205 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVI 205 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeee
Confidence 99999999999999999999987777766542 222 4778999999998877444443
No 357
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.98 E-value=1.1e-32 Score=262.81 Aligned_cols=136 Identities=41% Similarity=0.657 Sum_probs=126.7
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCccc-HHHHH
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVS-VGENI 634 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gT-IreNI 634 (782)
|+||||+|++|++++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|++|++.+|.+. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999876 9999
Q ss_pred HcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 003981 635 AYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATS 707 (782)
Q Consensus 635 ~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTS 707 (782)
..++++.++++..++.+ ..++.++.+...||||||||++|||||+++|++|||||||+
T Consensus 80 --------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 --------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp --------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred --------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 13577888888887766 36788888999999999999999999999999999999996
No 358
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=7.7e-32 Score=268.82 Aligned_cols=217 Identities=27% Similarity=0.435 Sum_probs=186.9
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.+++++|+.+|. +..+++||||+++||+..+++|++|+||||.+++|+|+.+|++|+|.++|.+++. ..+++|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 378999999996 5689999999999999999999999999999999999999999999999998865 456789
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCC-CccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQ-GYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~-GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
||.|.|--|+. .|+.|-|.|-..-...+.+|+.+- +..|.+++.- |+. ..+-..||-|-.|.|-+--|++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~~~---~~kIk~LSKGnqQKIQfisavi 146 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVGKK---TKKIKELSKGNQQKIQFISAVI 146 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhccccccc---cchHHHhhhhhhHHHHHHHHHh
Confidence 99999999995 799999998533234556666533 3456665532 222 2455679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhccC
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARKG 768 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~g 768 (782)
.+|+++|||||+|+||+++.+.+.+++.++. +|.|+|+-+||++-+.. ||+++.|++|+.|-+|+-++..+..|
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 9999999999999999999999999998876 69999999999999966 99999999999999999998876544
No 359
>PLN03073 ABC transporter F family; Provisional
Probab=99.98 E-value=8.2e-32 Score=319.72 Aligned_cols=221 Identities=22% Similarity=0.234 Sum_probs=164.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCC---CCCccEEEECCeeCCCC--Ch--
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY---EPTGGRITVGGEDLRTF--DK-- 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly---~p~~G~I~idG~di~~i--~~-- 609 (782)
.|+++|++|+|+ +.++|+|+||+|++|+++||||++|||||||+++|+|.. .|.+|+|.+.++++..- +.
T Consensus 177 ~I~i~nls~~y~---~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 177 DIHMENFSISVG---GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eEEEceEEEEeC---CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 599999999996 346999999999999999999999999999999999864 58899998655543211 11
Q ss_pred ----------HhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCH----HHHHHHHHHhcch----------hHHHhCC
Q 003981 610 ----------SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSK----DDIIKAAKAANAH----------DFIISLP 665 (782)
Q Consensus 610 ----------~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~----eei~~A~~~a~l~----------dfI~~LP 665 (782)
..+++.+++++|++.+...+..+|+.... +...+. +++.++.+..++. ..+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGAN-KDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhccccccccccc-ccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 12356689999998775556666653211 111122 2233333322221 122222
Q ss_pred CCcc-ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-c
Q 003981 666 QGYD-TLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-A 743 (782)
Q Consensus 666 ~Gld-T~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-a 743 (782)
|++ ......-.+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+|+|++..+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 221 1111223579999999999999999999999999999999999999999999886 6899999999999977 9
Q ss_pred CeEEEEeCCEEE-EecCHHHHHh
Q 003981 744 HQIALCSDGRIA-ELGTHFELLA 765 (782)
Q Consensus 744 D~IiVLd~G~Iv-e~Gth~eLl~ 765 (782)
|+|++|++|+|+ ..|++++..+
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999996 5788876554
No 360
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.2e-31 Score=313.68 Aligned_cols=219 Identities=31% Similarity=0.474 Sum_probs=185.4
Q ss_pred ccEEEEeeEEEcCCCC--CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC---CccEEEECCeeCCCCChH
Q 003981 536 GDICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP---TGGRITVGGEDLRTFDKS 610 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~--~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p---~~G~I~idG~di~~i~~~ 610 (782)
-+++|+|++..-+... .+.+|+|||.+++|||..||.||||||||||++.|+|.-+. .+|+|++||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 3689999999887542 47899999999999999999999999999999999999974 7999999995 45788
Q ss_pred hhhhceEEEcccCCCCc-ccHHHHHHcCC----CCCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCC-CCCCC
Q 003981 611 EWARVVSIVNQEPVLFS-VSVGENIAYGL----PDENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGER-GGLLS 680 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~LF~-gTIreNI~~G~----p~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~-G~~LS 680 (782)
.+|+..|||+||..+++ -||+|++.|.. |. +.+.+ .|++..+.-++.+ =-||.||.. +..+|
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~-~~~~~~k~~~V~~vi~~LgL~~-------~~~t~ig~~~~rgiS 172 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPS-SLSKEEKRERVEEVISELGLEK-------CADTLIGNPGIRGLS 172 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCChh-------hccceecCCCCCccc
Confidence 99999999999999986 69999998752 22 22333 3444444444432 258999843 35799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhH--HHhcCeEEEEeCCEEEEe
Q 003981 681 GGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLST--VQNAHQIALCSDGRIAEL 757 (782)
Q Consensus 681 GGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLst--i~~aD~IiVLd~G~Ive~ 757 (782)
||||+|++||--++.||+||+||||||+||+.+..++.+.|+++. +|||+|+.=|+++. ..-.|++++|.+|+++-.
T Consensus 173 GGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~ 252 (613)
T KOG0061|consen 173 GGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYS 252 (613)
T ss_pred cchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEe
Confidence 999999999999999999999999999999999999999999875 59999999999975 577999999999999999
Q ss_pred cCHHHHHh
Q 003981 758 GTHFELLA 765 (782)
Q Consensus 758 Gth~eLl~ 765 (782)
|+.+++.+
T Consensus 253 G~~~~~~~ 260 (613)
T KOG0061|consen 253 GSPRELLE 260 (613)
T ss_pred cCHHHHHH
Confidence 99988864
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=3.2e-31 Score=302.06 Aligned_cols=205 Identities=34% Similarity=0.507 Sum_probs=167.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++|++++|+ ++++++|+||++.+|+++||||++|||||||+++|+|...|++|+|...+. -.|
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 389999999995 468999999999999999999999999999999999999999999999873 139
Q ss_pred EEEcccCCCCcc-cHHHHHHcCCCCCCCCHHHHHHHHHH-----------------------------hcchhHHHhC--
Q 003981 617 SIVNQEPVLFSV-SVGENIAYGLPDENVSKDDIIKAAKA-----------------------------ANAHDFIISL-- 664 (782)
Q Consensus 617 a~V~Q~~~LF~g-TIreNI~~G~p~~~~s~eei~~A~~~-----------------------------a~l~dfI~~L-- 664 (782)
+|++|++.+.++ ||+|.+..|... ..++.+..+. +.+...+..|
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~ 144 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGE----LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGF 144 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHH----HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCC
Confidence 999999999965 999999987321 1111111111 1112222222
Q ss_pred CCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-c
Q 003981 665 PQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-A 743 (782)
Q Consensus 665 P~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-a 743 (782)
|+- ++++ .+||||||-|++|||||+.+|+||+|||||.+||.++-.-+.+-|.++ +| |+|+|+|.-..+.+ |
T Consensus 145 ~~~-~~~~----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~ 217 (530)
T COG0488 145 PDE-DRPV----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVA 217 (530)
T ss_pred Ccc-cCch----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHh
Confidence 111 4444 469999999999999999999999999999999999999999999875 56 99999999999977 9
Q ss_pred CeEEEEeCCEEEE-ecCHHHHHhc
Q 003981 744 HQIALCSDGRIAE-LGTHFELLAR 766 (782)
Q Consensus 744 D~IiVLd~G~Ive-~Gth~eLl~~ 766 (782)
++|+-+|+|++.. .|+|+.-++.
T Consensus 218 t~I~~ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 218 THILELDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred hheEEecCCceeEecCCHHHHHHH
Confidence 9999999998864 6888876654
No 362
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=259.27 Aligned_cols=216 Identities=28% Similarity=0.410 Sum_probs=184.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCCChHhh-hh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--YEPTGGRITVGGEDLRTFDKSEW-AR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl--y~p~~G~I~idG~di~~i~~~~l-R~ 614 (782)
++++|++.+-.+ .+++|++|||+|++||..||.||+|||||||.+.|+|. |++++|+|++||+||.++++++- |.
T Consensus 4 L~I~dLhv~v~~--~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 4 LEIKDLHVEVEG--KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eEEeeeEEEecC--chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 788999998852 14899999999999999999999999999999999996 58999999999999999998875 55
Q ss_pred ceEEEcccCCCCcc-cHHHHHHcCCC----CCC---CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHH
Q 003981 615 VVSIVNQEPVLFSV-SVGENIAYGLP----DEN---VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQR 686 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~g-TIreNI~~G~p----~~~---~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQR 686 (782)
-|.+.+|.|.=+.| |+++=++.+.. .+. .-.+++.++++..++++... +-.| ...||||+|.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l------~R~v---N~GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL------ERYV---NEGFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh------hccc---CCCcCcchHHH
Confidence 69999999999988 88887765421 000 22467778888888876321 2222 24699999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhc--CeEEEEeCCEEEEecCHHHH
Q 003981 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNA--HQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 687 IaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~a--D~IiVLd~G~Ive~Gth~eL 763 (782)
..|+-+++-+|++.|||||-|+||..+=+.|.+.++.++ +++++++|||.-..+... |++.||-+|+||..|.. ||
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 999999999999999999999999999999999999886 589999999998888775 99999999999999999 78
Q ss_pred Hh
Q 003981 764 LA 765 (782)
Q Consensus 764 l~ 765 (782)
..
T Consensus 232 ~~ 233 (251)
T COG0396 232 AE 233 (251)
T ss_pred HH
Confidence 65
No 363
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.97 E-value=9.7e-28 Score=260.23 Aligned_cols=468 Identities=15% Similarity=0.203 Sum_probs=296.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhc-cChhHH---HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 003981 239 NTVWEKVMSIVKAQIFRRVLIQKAEFFDR-YKVGEL---SGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNI 314 (782)
Q Consensus 239 ~~~~~~~~~~lr~~lf~kll~lp~~~f~~-~~~G~l---~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~ 314 (782)
..++-.+..++....|+..+... .||.- +.-|.+ =+++|+|+..+.+-..+.+.+ ..-.++.++.+...+.-.
T Consensus 182 ~klaLafrtrL~~h~y~~Y~snq-TyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysn--LtKP~lDl~l~s~~L~~s 258 (728)
T KOG0064|consen 182 SKLALAFRTRLTRHAYDMYLSNQ-TFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSN--LTKPVLDLILISFTLLDS 258 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC-ceEEEecccchhcCccchhHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHhh
Confidence 33444444555555555555444 44432 222222 246889988887777665542 344454444333333222
Q ss_pred hhHHH--H--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHH
Q 003981 315 APQLA--P--ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQ 390 (782)
Q Consensus 315 ~~~La--l--i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~ 390 (782)
+.... . ++++.+.+-.-+.+.+..+..+...+.....+.+...=+..+.+-+.|-.|+..+.+.++.++..+....
T Consensus 259 ~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~ 338 (728)
T KOG0064|consen 259 ATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVE 338 (728)
T ss_pred hccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 21111 1 1111111111223333334444444555555566666678899999999999999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCCCC--------HHHHHHHHHHHHHHHHHHH
Q 003981 391 SGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKV------------KAGELS--------VGIVASFIGYTFTLTFAVQ 450 (782)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv------------~~g~lt--------~G~l~a~~~~~~~l~~pl~ 450 (782)
+....-+.+.+...+-+++.- ..|-|.-+| ..++.. ...+.+.=.+......++.
T Consensus 339 qm~li~k~r~~YiMleqF~mK-----YvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAie 413 (728)
T KOG0064|consen 339 QMNLIFKVRLWYIMLEQFVMK-----YTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIE 413 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 766655555555444433321 123222222 122211 1122333344455566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccC
Q 003981 451 GLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVC 530 (782)
Q Consensus 451 ~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (782)
.++....++++...--.|+.+.++.-+ +. ..+.-....-++..+........++.+ .+ ...
T Consensus 414 RlMssyKeItqLaGyt~Rv~~mf~v~~--dv-~~g~~~k~~v~e~~~~~~~~e~r~s~~-------------l~---~~~ 474 (728)
T KOG0064|consen 414 RLMSSYKEITQLAGYTNRVFTMFSVLH--DV-HKGNYNKTAVPEILSSRTIDESRNSNP-------------LP---TTD 474 (728)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH--HH-hcccccccccCchhhccCccccccCCc-------------CC---ccc
Confidence 788888888888888889886654210 00 000000000000000000000000000 00 000
Q ss_pred CCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChH
Q 003981 531 SFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS 610 (782)
Q Consensus 531 ~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~ 610 (782)
.......|.++||-.--|. ...+...+||+|++|-.+-|.||+|||||+|.+.|.|+|+...|...+--.
T Consensus 475 ~i~~~~gI~lenIpvItP~--~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~-------- 544 (728)
T KOG0064|consen 475 AIRNFNGIILENIPVITPA--GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRP-------- 544 (728)
T ss_pred hhhcccceEEecCceeccC--cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCC--------
Confidence 0112346999999888774 346889999999999999999999999999999999999998887765322
Q ss_pred hhhhceEEEcccCCCCcccHHHHHHcCCC-----CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 611 EWARVVSIVNQEPVLFSVSVGENIAYGLP-----DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 611 ~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p-----~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
.+|-|+||.|+.=-||+||-|-|-.. +...+|.|+++.++.+.++- |.+-..|+|.+. +--.-||||+||
T Consensus 545 ---~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~-i~qr~~g~da~~-dWkd~LsgGekQ 619 (728)
T KOG0064|consen 545 ---NNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEH-ILQREGGWDAVR-DWKDVLSGGEKQ 619 (728)
T ss_pred ---cceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHH-HHHhccChhhhc-cHHhhccchHHH
Confidence 34999999999999999999987411 13578999999999999975 566677777654 445579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEe
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCS 750 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd 750 (782)
|+++||.++.+|+.-+|||+|||+-.+-|..+-++.++. |-+.|-||||++..+.-..++-.|
T Consensus 620 R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~d 682 (728)
T KOG0064|consen 620 RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEFD 682 (728)
T ss_pred HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999884 889999999999988777776663
No 364
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=6.8e-31 Score=264.74 Aligned_cols=190 Identities=27% Similarity=0.416 Sum_probs=160.1
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCC--ccc
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLF--SVS 629 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF--~gT 629 (782)
..++|+||||++++||.+||||++|||||||+++|+|.|+|++|+|.++|. |+..---..=| +-|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccc
Confidence 457899999999999999999999999999999999999999999999998 44333333323 358
Q ss_pred HHHHHHc-----CCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 003981 630 VGENIAY-----GLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDE 704 (782)
Q Consensus 630 IreNI~~-----G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDE 704 (782)
-||||.+ |... ..-++.+.+..+-|.+.||+. .|| .+.|-|.+-|||.|=|.--+|+||||||
T Consensus 106 GreNi~l~~~~~G~~~-~ei~~~~~eIieFaELG~fi~-------~Pv----ktYSSGM~aRLaFsia~~~~pdILllDE 173 (249)
T COG1134 106 GRENIYLRGLILGLTR-KEIDEKVDEIIEFAELGDFID-------QPV----KTYSSGMYARLAFSVATHVEPDILLLDE 173 (249)
T ss_pred hHHHHHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHhh-------Cch----hhccHHHHHHHHHhhhhhcCCCEEEEeh
Confidence 9999965 3211 123445566777788888863 344 6799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 705 ATSALDAVSERLVQDALNHL-MKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 705 aTSALD~~tE~~I~~~L~~l-~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
+.|..|+.=.++=.+.++++ .+++|+|+|+|.++.|++ ||++++|++|+|+..|+.+|.++.
T Consensus 174 vlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 174 VLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 99999998777777778777 688999999999999977 999999999999999999999864
No 365
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5.3e-30 Score=247.67 Aligned_cols=215 Identities=23% Similarity=0.396 Sum_probs=183.8
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECC-eeCCCCChHhh-hhc
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG-EDLRTFDKSEW-ARV 615 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG-~di~~i~~~~l-R~~ 615 (782)
++++||+.+++ +-.+|+|+||+|.+||.-+|+||+|+||||++..|.|--.|++|+++++| .|+..++.... |.-
T Consensus 6 L~~~~vsVsF~---GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 6 LYLDGVSVSFG---GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred EEEeceEEEEc---ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 78899999996 45789999999999999999999999999999999999999999999999 99999997776 556
Q ss_pred eEEEcccCCCCc-ccHHHHHHcCCCCC------------CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChh
Q 003981 616 VSIVNQEPVLFS-VSVGENIAYGLPDE------------NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGG 682 (782)
Q Consensus 616 Ia~V~Q~~~LF~-gTIreNI~~G~p~~------------~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGG 682 (782)
|+=-+|.|..|. -||+||+.+....+ ....++|.+.+...++.|- ...-...||-|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~-----------~~~~A~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE-----------RDRLAALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh-----------hhhhhhhhccc
Confidence 999999999996 59999997653111 1123356666655555543 23445789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHH
Q 003981 683 QRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 683 QrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~ 761 (782)
|||++.|+--+..+|++|+||||++++-.+-....-+-|+.+.+.++++||-|.+..++. ||+|-||.+|.|...|+-+
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 999999999999999999999999999665556667788888889999999999999976 9999999999999999999
Q ss_pred HHHhc
Q 003981 762 ELLAR 766 (782)
Q Consensus 762 eLl~~ 766 (782)
|+-+.
T Consensus 232 ~v~~d 236 (249)
T COG4674 232 EVQND 236 (249)
T ss_pred HhhcC
Confidence 98654
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=4.9e-30 Score=265.99 Aligned_cols=191 Identities=21% Similarity=0.266 Sum_probs=128.1
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHH-HHHHcCCCCCccEEEEC-C------eeCCCCC---hHhhhh-ceEEE
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIV-QLLARFYEPTGGRITVG-G------EDLRTFD---KSEWAR-VVSIV 619 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl-~LL~gly~p~~G~I~id-G------~di~~i~---~~~lR~-~Ia~V 619 (782)
+.++|+||||+|++||++||+|+||||||||+ ..+. .+|++.+. + ..+..+. ...++. ..++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 45799999999999999999999999999996 4442 13433221 0 1111111 111111 23444
Q ss_pred cccCC-CCc--cc---HHHHHHcCC-CCCCCCHHHHHHHHHHhcchhHHHhCCCCccc-cccCCCCCCChhHHHHHHHHH
Q 003981 620 NQEPV-LFS--VS---VGENIAYGL-PDENVSKDDIIKAAKAANAHDFIISLPQGYDT-LVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 620 ~Q~~~-LF~--gT---IreNI~~G~-p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT-~VGE~G~~LSGGQrQRIaIAR 691 (782)
.|++. .++ .+ +.+...+-. .......++..+.++.. |+.. ........||||||||++|||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDV-----------GLGYLTLSRSAPTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHC-----------CCCcccccCccCcCCHHHHHHHHHHH
Confidence 45443 211 12 222222110 00001111112222222 2222 245667789999999999999
Q ss_pred HhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEE------eCCEEEEec
Q 003981 692 ALLKNA--PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALC------SDGRIAELG 758 (782)
Q Consensus 692 ALlr~p--~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVL------d~G~Ive~G 758 (782)
||+++| ++|||||||++||+.+.+.+.+.|+++. +++|+|+|||.++.+..||+|++| ++|+|||+|
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 999998 5999999999999999999999998864 588999999999999999999999 999999987
No 367
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.7e-30 Score=270.35 Aligned_cols=193 Identities=25% Similarity=0.358 Sum_probs=142.5
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHH-----c-CC----CCCcc-----------EEEECCeeCCCCChHh--
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA-----R-FY----EPTGG-----------RITVGGEDLRTFDKSE-- 611 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~-----g-ly----~p~~G-----------~I~idG~di~~i~~~~-- 611 (782)
.|+|||++||.|..++|+|.||||||||++.++ + +. .|..+ -|.+|..+|..-+...
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 599999999999999999999999999998653 2 22 13333 3556655553322111
Q ss_pred --------hhh----------------ceEEEcccCCC-CcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCC
Q 003981 612 --------WAR----------------VVSIVNQEPVL-FSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQ 666 (782)
Q Consensus 612 --------lR~----------------~Ia~V~Q~~~L-F~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~ 666 (782)
+|+ .+.|..++... .+-|+.||+.|.... ...++..++++..
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~--~~~~~~~~~L~~v----------- 156 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI--PKIARKLQTLCDV----------- 156 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh--hhHHHHHHHHHHc-----------
Confidence 111 13344444442 456777877765211 1122333333333
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH
Q 003981 667 GYDT-LVGERGGLLSGGQRQRIAIARALLKN---APILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ 741 (782)
Q Consensus 667 GldT-~VGE~G~~LSGGQrQRIaIARALlr~---p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~ 741 (782)
|++. ..++....||||||||++|||||.++ |+++||||||++||+.+.+.+.+.|+++. ++.|+|+|+|++..++
T Consensus 157 gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~ 236 (261)
T cd03271 157 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK 236 (261)
T ss_pred CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3443 35788899999999999999999996 79999999999999999999999998876 4899999999999999
Q ss_pred hcCeEEEE------eCCEEEEecCH
Q 003981 742 NAHQIALC------SDGRIAELGTH 760 (782)
Q Consensus 742 ~aD~IiVL------d~G~Ive~Gth 760 (782)
.||+|++| ++|+|+++|++
T Consensus 237 ~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 237 CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 99999999 89999999974
No 368
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.5e-29 Score=254.71 Aligned_cols=213 Identities=23% Similarity=0.377 Sum_probs=164.0
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEc-ccCCCC-cccH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVN-QEPVLF-SVSV 630 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~-Q~~~LF-~gTI 630 (782)
-++.+||||+||||+.++++|++|+||||++|+|.|+..|++|.|.++|.+--+ +.+++-+++++|. |...|. .--+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechh
Confidence 357899999999999999999999999999999999999999999999997665 3444444455543 333221 1113
Q ss_pred HHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 003981 631 GENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALD 710 (782)
Q Consensus 631 reNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD 710 (782)
.|-+..-+.--++++++..+-. +.+++-| +++..+-.+-..||=|||-|..||-||+++|+||+|||||=.||
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~-----~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD 188 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERL-----DFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHH-----HHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc
Confidence 3332211000024455443322 1122211 45556666778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhccCchHHH
Q 003981 711 AVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARKGQYASL 773 (782)
Q Consensus 711 ~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L 773 (782)
..+...|.+.|++.. +++|++..||-++-|.. ||||++|++|+++..|+.++|.++-|.|+++
T Consensus 189 V~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~ 254 (325)
T COG4586 189 VNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF 254 (325)
T ss_pred hhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEE
Confidence 999999999998764 58899999999998855 9999999999999999999999987777654
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=4.3e-29 Score=253.28 Aligned_cols=164 Identities=25% Similarity=0.373 Sum_probs=135.2
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC---------ccEEEECCeeCCCCChHhhhhceEEEcccCCCCc
Q 003981 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT---------GGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS 627 (782)
Q Consensus 557 ~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~---------~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~ 627 (782)
+++++++++| +++|+||||||||||+++|.++..|. .|++.++|.++.. ...+++|+||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 6789999999 99999999999999999999998665 3468888887654 22467899999999988
Q ss_pred ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc----cCCCEEEEe
Q 003981 628 VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL----KNAPILILD 703 (782)
Q Consensus 628 gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl----r~p~ILILD 703 (782)
|+. ...+++.++++. ++-.+ .....||||||||++||||+. ++|+++|||
T Consensus 89 --------~~~----~~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlD 142 (197)
T cd03278 89 --------YSI----ISQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLD 142 (197)
T ss_pred --------eeE----EehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 431 123455555544 22223 344679999999999999986 577999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeC
Q 003981 704 EATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSD 751 (782)
Q Consensus 704 EaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~ 751 (782)
|||++||+.+...+.+.|+++.++.|+|+|||++..+..||+|+.|..
T Consensus 143 EP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 143 EVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999999999998888999999999999999999998853
No 370
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=2.8e-28 Score=277.99 Aligned_cols=204 Identities=29% Similarity=0.421 Sum_probs=175.1
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-++++|++|+|++ ++++++++||.|++|++||||||+|+|||||+|+|+|...|.+|+|.++-. + +|
T Consensus 321 vl~~~~~~~~y~~--~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~i 387 (530)
T COG0488 321 VLEFENVSKGYDG--GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------KI 387 (530)
T ss_pred eEEEeccccccCC--CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------EE
Confidence 4899999999973 368999999999999999999999999999999999999999999998654 2 39
Q ss_pred EEEcccC-CCC-cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 617 SIVNQEP-VLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 617 a~V~Q~~-~LF-~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
||.+|+. .++ +.|+-|++.-+.|+ ..+.++...+...+....- ..++ ...||||||-|+.||+.++
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~~--~~e~~~r~~L~~f~F~~~~------~~~~----v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFPD--GDEQEVRAYLGRFGFTGED------QEKP----VGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCcc--ccHHHHHHHHHHcCCChHH------HhCc----hhhcCHhHHHHHHHHHHhc
Confidence 9999998 444 45999999877543 3478888888777765432 1333 4569999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEEe-cCHHHHHhccC
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAEL-GTHFELLARKG 768 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~-Gth~eLl~~~g 768 (782)
.+|.+|||||||-.||.+|-..+.++|.++ .-|+|+|+|.-..+.. |++|+++++ ++.+. |+|++-.+..+
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~~ 528 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQKK 528 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhhc
Confidence 999999999999999999999999999987 4599999999999977 999999999 88776 89988876543
No 371
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.7e-29 Score=240.75 Aligned_cols=197 Identities=26% Similarity=0.413 Sum_probs=164.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
++.+|++..-. +..++.++||++.+||.+-|+||+|||||||+++|+|+.+|++|+|+++|.++.... ++.++.+-
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 34566666553 457899999999999999999999999999999999999999999999999988754 34578888
Q ss_pred EEcccCCCC-cccHHHHHHcCCCCCC-CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 618 IVNQEPVLF-SVSVGENIAYGLPDEN-VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 618 ~V~Q~~~LF-~gTIreNI~~G~p~~~-~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
|..-.+-+= .-|+.||+.|+....+ .+++.+++|+..+++.++ ..+| + .+||-||+.|+||||-.+.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp------~----~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP------V----GQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc------h----hhcchhHHHHHHHHHHHcC
Confidence 888888775 4699999999864322 568999999999999987 4444 3 3599999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhHHHhcCeEEEEe
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHL-MKGRTTLVIAHRLSTVQNAHQIALCS 750 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l-~~~kTvIvIaHRLsti~~aD~IiVLd 750 (782)
.+|+-||||||+|||.+.+..+..-+... .+|-.||..||...-+..+ ++.-++
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~a-~~~~~~ 202 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIASA-QIRRLD 202 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCcc-ceEEee
Confidence 99999999999999999999999988654 4688899999998766543 344433
No 372
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.9e-28 Score=232.36 Aligned_cols=225 Identities=24% Similarity=0.404 Sum_probs=175.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECC-----eeCCCCChHhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG-----EDLRTFDKSEW 612 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG-----~di~~i~~~~l 612 (782)
++.+++|..|..+ .--+||||++-|||..+|||+||||||||+++|.+-..|+.|+|.++- .|+-.++..+-
T Consensus 7 L~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 7 LSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred eeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 7788999999743 457999999999999999999999999999999999999999999965 34545554443
Q ss_pred ----hhceEEEcccCC--C-C----cccHHHHHH-cCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCC
Q 003981 613 ----ARVVSIVNQEPV--L-F----SVSVGENIA-YGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLS 680 (782)
Q Consensus 613 ----R~~Ia~V~Q~~~--L-F----~gTIreNI~-~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LS 680 (782)
|-.-++|.|+|- | . .+.|-|-+. .| .--+-+|.+ .+.||+++..-. .+.+.+....+|
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G----~RHYG~iR~-----~a~~WL~~VEI~-~~RiDD~PrtFS 153 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG----ARHYGNIRA-----EAQDWLEEVEID-LDRIDDLPRTFS 153 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhh----hhhhhhHHH-----HHHHHHHhcccC-cccccCcccccc
Confidence 445699999994 1 1 112222221 11 011233332 234666655433 356778889999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEe
Q 003981 681 GGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAEL 757 (782)
Q Consensus 681 GGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~ 757 (782)
||.+||+.|||-|+..|++..+||||-+||.--++++.+.++.+.. +-.+|+|||.+...+- ||+.+||++|+++|.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999999999999988764 6689999999998876 999999999999999
Q ss_pred cCHHHHHhc-cCchHHHHH
Q 003981 758 GTHFELLAR-KGQYASLVC 775 (782)
Q Consensus 758 Gth~eLl~~-~g~Y~~L~~ 775 (782)
|--+..+.. ...|.+|.-
T Consensus 234 GLTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 234 GLTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred ccccccccCCCCchHHHHH
Confidence 987777754 456777653
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=1.8e-28 Score=252.04 Aligned_cols=192 Identities=21% Similarity=0.220 Sum_probs=149.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEe-CCcEEEEECCCCCcHHHHHHHHH-cCCCCCccEEEECCeeCCCCChHhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLK-SGSVTALVGSSGAGKSTIVQLLA-RFYEPTGGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~-~Ge~vaIVG~SGSGKSTLl~LL~-gly~p~~G~I~idG~di~~i~~~~lR~ 614 (782)
.|+++|.. +|.++ ++|+|+.. +|++++|+|++|||||||+++|. .+|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 48999998 77522 56777654 58999999999999999999999 5777777766654 2334455566777
Q ss_pred ceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCC-ccccccCCCCCCChhHHHHHHHHHHh
Q 003981 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQG-YDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~G-ldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
.|++++|++. ....+++++ ..+.+++.+... ++.| +++.+...+.+||||||||++||||+
T Consensus 77 ~v~~~f~~~~----~~~~~~r~~----gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al 138 (213)
T cd03279 77 EVSFTFQLGG----KKYRVERSR----GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLAL 138 (213)
T ss_pred EEEEEEEECC----eEEEEEEec----CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHH
Confidence 8999999983 333344443 245555554331 2333 56666778889999999999999999
Q ss_pred cc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHh-cCeEEEEeCCEE
Q 003981 694 LK----------NAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQN-AHQIALCSDGRI 754 (782)
Q Consensus 694 lr----------~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~-aD~IiVLd~G~I 754 (782)
.. +|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|-+
T Consensus 139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 74 6789999999999999999999999988865 8899999999998765 799999999854
No 374
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.95 E-value=9.1e-25 Score=228.11 Aligned_cols=270 Identities=20% Similarity=0.373 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 178 GLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPE---PLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIF 254 (782)
Q Consensus 178 ~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf 254 (782)
++++++.++..++.++.|++++.++|.+..+... ..+.....+++++++...+.....+...+...++..++|.+++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888999999999986544322 1112222222223333344444445567888999999999999
Q ss_pred HHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003981 255 RRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVA 334 (782)
Q Consensus 255 ~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~~~~~~~~~~ 334 (782)
+|++++|.++|+++++|++++|+++|++.+++.+...+. ..+..+..+++.+++++.++|++++++++++++..++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLF--QIISSIISIIFSLILLFFISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhccccccccccccccccccccccccc--ccccccchhhhhhhcccccccccccccchhhhhhHhhhh
Confidence 999999999999999999999999999999999987765 356677788888899999999999998878787777888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 335 VYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISL 414 (782)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (782)
.+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..+.......+..++..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999998899999988888
Q ss_pred HHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHH
Q 003981 415 LALYCLGGSK-VKAGELSVGIVASFIGYTFTLTFAV 449 (782)
Q Consensus 415 ~~il~~G~~l-v~~g~lt~G~l~a~~~~~~~l~~pl 449 (782)
++++++|+++ +.+|.+|+|++++++.+...+.+|+
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 9999999999 9999999999999999999999885
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=6.4e-28 Score=252.94 Aligned_cols=191 Identities=23% Similarity=0.326 Sum_probs=141.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHH----------------cCCCCCcc------
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA----------------RFYEPTGG------ 595 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~----------------gly~p~~G------ 595 (782)
|+++|- .+|. +..++++++ |++++|+||+|||||||+++|+ ++..+.+|
T Consensus 4 i~~~nf-ksy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 4 VIIQGF-KSYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEeCc-cCcc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 455543 1353 345777776 7899999999999999999998 44455556
Q ss_pred --EEEECCeeCCCC---ChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHH--HhCCCCc
Q 003981 596 --RITVGGEDLRTF---DKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFI--ISLPQGY 668 (782)
Q Consensus 596 --~I~idG~di~~i---~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI--~~LP~Gl 668 (782)
+|.+++.+-... +...+++.+++++|++.++. ..++.++++.+++..++.+.- ..+|+|.
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~-------------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~ 141 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK-------------KNVTKNDVMNLLESAGFSRSNPYYIVPQGK 141 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC-------------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCc
Confidence 666655322111 22345667788877765532 135677888888777665421 0123443
Q ss_pred cc-------cccCCCCCCChhHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 003981 669 DT-------LVGERGGLLSGGQRQRIAIARALL----KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRL 737 (782)
Q Consensus 669 dT-------~VGE~G~~LSGGQrQRIaIARALl----r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRL 737 (782)
.+ ...+.+..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|+++.+++|+|+++|+.
T Consensus 142 i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~ 221 (243)
T cd03272 142 INSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP 221 (243)
T ss_pred hHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 22 235788899999999999999996 4689999999999999999999999999987788999999999
Q ss_pred hHHHhcCeEEEEe
Q 003981 738 STVQNAHQIALCS 750 (782)
Q Consensus 738 sti~~aD~IiVLd 750 (782)
...+.||+|++|+
T Consensus 222 ~~~~~~d~i~~l~ 234 (243)
T cd03272 222 ELLEVADKFYGVK 234 (243)
T ss_pred HHHhhCCEEEEEE
Confidence 9889999999985
No 376
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.1e-27 Score=223.53 Aligned_cols=203 Identities=28% Similarity=0.422 Sum_probs=146.6
Q ss_pred EEEEeeEEEcC--CC--CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECC----eeCCCCCh
Q 003981 538 ICLEDVYFSYP--LR--PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG----EDLRTFDK 609 (782)
Q Consensus 538 I~f~nVsF~Y~--~~--~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG----~di~~i~~ 609 (782)
+..+||+.++. .+ -.-||++|+||+++.||++++-||||||||||++.|-+-|.|++|+|.+.- .|+-...+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 67778866553 11 124799999999999999999999999999999999999999999999853 24444443
Q ss_pred Hh----hhhceEEEcccCCCCcc-----cHHHHH-HcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCC
Q 003981 610 SE----WARVVSIVNQEPVLFSV-----SVGENI-AYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLL 679 (782)
Q Consensus 610 ~~----lR~~Ia~V~Q~~~LF~g-----TIreNI-~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~L 679 (782)
.+ -|+.||||+|---.... -+.|-+ ..|-|. +.-.++...-+..- ++|+.+-.. -..++
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~-~~a~~~a~~Ll~rL-------nlperLW~L---aPaTF 153 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPR-EVARAKAADLLTRL-------NLPERLWSL---APATF 153 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCH-HHHHHHHHHHHHHc-------CCCHHHhcC---CCccc
Confidence 33 46779999994332221 122222 233221 00011111112222 345544432 25789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeC
Q 003981 680 SGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSD 751 (782)
Q Consensus 680 SGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~ 751 (782)
|||++||+.|||.+.-|-|||+|||||++||+.+.+.|.+.|++.. +|+..|=|=|.-+.=.. |||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999998765 58888889999876544 899987753
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=2.4e-26 Score=242.29 Aligned_cols=183 Identities=23% Similarity=0.298 Sum_probs=140.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCC-ccEEEECCe-eCCCCC--hHhhhhceEEEcccCCC---------C-cccHH
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYEPT-GGRITVGGE-DLRTFD--KSEWARVVSIVNQEPVL---------F-SVSVG 631 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~p~-~G~I~idG~-di~~i~--~~~lR~~Ia~V~Q~~~L---------F-~gTIr 631 (782)
..+++||||||||||||+++|+++..++ .|+++..|. |+-... ....+..|++++|++.. . .-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999876 568988887 432211 11234589999999632 1 46888
Q ss_pred HHHHcCCC------CCCCCHHHHHHHHHHhcch----hHHHhCCCCc-------cccccCCCCCCChhHHHHHHHHHHhc
Q 003981 632 ENIAYGLP------DENVSKDDIIKAAKAANAH----DFIISLPQGY-------DTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 632 eNI~~G~p------~~~~s~eei~~A~~~a~l~----dfI~~LP~Gl-------dT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+||.++.. +.....+++.++++.+++. .|+ +|+|- ..........||||||||++|||||.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~--i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFL--IMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEE--EeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 88866531 1123567888888888874 110 11110 12234566789999999999999997
Q ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEe
Q 003981 695 ----KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCS 750 (782)
Q Consensus 695 ----r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd 750 (782)
++|+++||||||++||+.+.+.+.+.|+++.++.|+|+|||+.+.+..||+|+-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999999888899999999999999999998654
No 378
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=3.9e-26 Score=278.15 Aligned_cols=223 Identities=22% Similarity=0.367 Sum_probs=190.4
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCC-ChHhhhh
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF-DKSEWAR 614 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i-~~~~lR~ 614 (782)
-.+..+|++..|+.. +. +.+++|+.|++||+.++-|++||||||+++++.|...|++|++.++|.++..- +.+..|+
T Consensus 563 ~~~~~~~L~k~y~~~-~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK-DG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecch-hh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 358899999999854 22 89999999999999999999999999999999999999999999999998764 4556999
Q ss_pred ceEEEcccCCCCc-ccHHHHHHcCCCCCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 003981 615 VVSIVNQEPVLFS-VSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
++||+||+..|+. -|.||.+.+-.--..... +.+.+.|+..++.+.. +++ -.++|||+|.||++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~-------~~~----~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYA-------NKQ----VRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhh-------ccc----hhhCCCcchhhHHH
Confidence 9999999999986 599999976311112222 2356666666666553 333 46799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGR-TTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~k-TvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|-|++-+|++++|||||+++|+.+++.+.+.|+++.++. .+|+.||.++.... |||+.+|.+|++...|+.++|.++-
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhc
Confidence 999999999999999999999999999999999988754 99999999999876 9999999999999999999999876
Q ss_pred CchH
Q 003981 768 GQYA 771 (782)
Q Consensus 768 g~Y~ 771 (782)
|.++
T Consensus 790 G~gy 793 (885)
T KOG0059|consen 790 GSGY 793 (885)
T ss_pred CCcE
Confidence 6543
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=7.8e-26 Score=230.76 Aligned_cols=163 Identities=23% Similarity=0.283 Sum_probs=131.5
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHH----cCCCCCccEEEECCeeCCCCChHhhhhceEEEcccC-----CCCc-cc
Q 003981 560 NLTLKSGSVTALVGSSGAGKSTIVQLLA----RFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEP-----VLFS-VS 629 (782)
Q Consensus 560 sl~I~~Ge~vaIVG~SGSGKSTLl~LL~----gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~-----~LF~-gT 629 (782)
++++.+| +++|+||+|||||||++.|. |.-.|..|.+..+.. .+.....+..|++++|++ .++. -|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~---~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPK---LIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHH---HHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 3566677 99999999999999999994 888888887762222 222344567899999998 4433 29
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHH------HHHHHHhccCCCEEEEe
Q 003981 630 VGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQR------IAIARALLKNAPILILD 703 (782)
Q Consensus 630 IreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQR------IaIARALlr~p~ILILD 703 (782)
+.||+.++ + .+++.+.+ .+....|||||||| ++||||+..+|+++|||
T Consensus 93 ~~~~~~~~-~-----~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 93 ILENVIFC-H-----QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred Hhhceeee-c-----hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 99999876 1 33443222 45567899999996 79999999999999999
Q ss_pred CCCCCCCHHHHH-HHHHHHHHhcC--CcEEEEEecChhHHHhcCeEEEEeCC
Q 003981 704 EATSALDAVSER-LVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDG 752 (782)
Q Consensus 704 EaTSALD~~tE~-~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~IiVLd~G 752 (782)
|||++||+.+.. .+.+.|+++.+ ++|+|+|||.+..+..||+|++|++.
T Consensus 147 EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 147 EPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 999999999998 99999988765 78999999999999999999999653
No 380
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=2.4e-25 Score=268.41 Aligned_cols=104 Identities=34% Similarity=0.499 Sum_probs=94.4
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH
Q 003981 667 GYDT-LVGERGGLLSGGQRQRIAIARALLKNA---PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ 741 (782)
Q Consensus 667 GldT-~VGE~G~~LSGGQrQRIaIARALlr~p---~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~ 741 (782)
|++. .++.....||||||||++|||||+++| +++||||||++||..+.+.+.+.|+++. +|+|+|+|+|.+..+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4443 367888999999999999999999999 9999999999999999999999998875 5899999999999999
Q ss_pred hcCeEEEE------eCCEEEEecCHHHHHhccCch
Q 003981 742 NAHQIALC------SDGRIAELGTHFELLARKGQY 770 (782)
Q Consensus 742 ~aD~IiVL------d~G~Ive~Gth~eLl~~~g~Y 770 (782)
.||+|++| ++|+|++.|+++++.+....|
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 99999999 799999999999998766444
No 381
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=4.8e-25 Score=275.65 Aligned_cols=215 Identities=21% Similarity=0.314 Sum_probs=155.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHH---------HHHcCCCCCcc--------EEEE
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQ---------LLARFYEPTGG--------RITV 599 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~---------LL~gly~p~~G--------~I~i 599 (782)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++ +|.|...+..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 588888862 2599999999999999999999999999999 55554332111 2455
Q ss_pred CCeeCCCCCh----------Hhhhh---------ce-----EEEccc------------------C--------------
Q 003981 600 GGEDLRTFDK----------SEWAR---------VV-----SIVNQE------------------P-------------- 623 (782)
Q Consensus 600 dG~di~~i~~----------~~lR~---------~I-----a~V~Q~------------------~-------------- 623 (782)
|-.++..-+. +++|+ +. .+.+|. +
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 5444332111 13331 11 112221 1
Q ss_pred ------CCCc-ccHHHHHHcCCCCC---CCCHHHHHHHHHHhcchhHHHhCCCCcccc-ccCCCCCCChhHHHHHHHHHH
Q 003981 624 ------VLFS-VSVGENIAYGLPDE---NVSKDDIIKAAKAANAHDFIISLPQGYDTL-VGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 624 ------~LF~-gTIreNI~~G~p~~---~~s~eei~~A~~~a~l~dfI~~LP~GldT~-VGE~G~~LSGGQrQRIaIARA 692 (782)
..+. -||.||+.|+.... ..+.+++.+.++ .+..+ |++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 1232 48999998873100 011234443332 12222 56654 678889999999999999999
Q ss_pred hc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEEe------CCEEEEecCHHH
Q 003981 693 LL---KNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALCS------DGRIAELGTHFE 762 (782)
Q Consensus 693 Ll---r~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd------~G~Ive~Gth~e 762 (782)
|+ ++|++|||||||++||..+.+.+.+.|+++. +|+|+|+|+|++..++.||+|++|+ +|+|++.|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 6999999999999999999999999998875 5889999999999999999999996 899999999999
Q ss_pred HHhcc
Q 003981 763 LLARK 767 (782)
Q Consensus 763 Ll~~~ 767 (782)
+....
T Consensus 904 l~~~~ 908 (1809)
T PRK00635 904 LIHLH 908 (1809)
T ss_pred HHhcc
Confidence 98654
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=2.1e-26 Score=236.11 Aligned_cols=185 Identities=19% Similarity=0.221 Sum_probs=140.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhh-hc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWA-RV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR-~~ 615 (782)
.|+++|.- +|. +..+++++++ +.++|+||+||||||++++|. .++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 47778876 775 3468999988 899999999999999999997 34554432 233 57
Q ss_pred eEEEcccCCCCcc-cHHHHHHcCCCCCCCCHHHH-----HHHHHH----hcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 616 VSIVNQEPVLFSV-SVGENIAYGLPDENVSKDDI-----IKAAKA----ANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 616 Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s~eei-----~~A~~~----a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
+++++|+..+++. |.++++.+.... ...+.+ ...... .+-...+..||++.++.++ .|||||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~----~lS~G~~~ 134 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEI--IDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS----NLSGGEKT 134 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeC--CCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh----hcCHHHHH
Confidence 9999999887764 788887665211 011100 000000 0111234668888888754 69999999
Q ss_pred HHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeC
Q 003981 686 RIAIARALL----KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSD 751 (782)
Q Consensus 686 RIaIARALl----r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~ 751 (782)
|++||||+. ++|++++|||||++||+.+...+.+.|+++.++.|+|+|||+....+.||+|++|..
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 999999996 358999999999999999999999999999888899999999998899999999864
No 383
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=1.5e-25 Score=213.09 Aligned_cols=209 Identities=29% Similarity=0.444 Sum_probs=179.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
++++||+.+- -|-.+|.++.+||.+-+|||+|||||||+.-++|+. |-+|+|.++|.|+..++..++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 5667776432 266789999999999999999999999999999986 58999999999999999999999999
Q ss_pred EEcccC-CCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc-
Q 003981 618 IVNQEP-VLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK- 695 (782)
Q Consensus 618 ~V~Q~~-~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr- 695 (782)
|..|+. -.|...|-.-+++-.|+ ...-+++.++|++-+++| .+|..-..|||||-||+-+|-.++.
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~-~~~a~~i~~i~~~L~l~D-----------KL~Rs~~qLSGGEWQRVRLAav~LQv 143 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPD-KTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQI 143 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCch-HHHHHHHHHHHhhhcccc-----------hhhhhhhhcCcccceeeEEeEEEEEe
Confidence 998754 58999999999999885 344566777777766655 3345557899999999999998885
Q ss_pred ----C--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChh-HHHhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 696 ----N--APILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLS-TVQNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 696 ----~--p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLs-ti~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
| .++||||||-+.||...+..+...|.++. .|.|+|+..|.|. |+++||++..+..|++..+|.-+|.+..
T Consensus 144 ~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 144 TPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred cCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 3 36999999999999999998888887775 5999999999996 8999999999999999999999998754
No 384
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=4.8e-25 Score=262.82 Aligned_cols=212 Identities=31% Similarity=0.444 Sum_probs=175.9
Q ss_pred EEEeeEEEcCC-CCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCccEEEECCeeCCCCChHhhhhc
Q 003981 539 CLEDVYFSYPL-RPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE--PTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 539 ~f~nVsF~Y~~-~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~--p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
..+|+.|.-+. +....+|+||+=-++||..+|++|+||||||||++.|+|--. ..+|+|+|||.+..+ +..++.
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~ 865 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARV 865 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccc
Confidence 34444444321 234679999999999999999999999999999999998643 358999999998765 789999
Q ss_pred eEEEcccC-CCCcccHHHHHHcC----CCCCCCCHHH----HHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHH
Q 003981 616 VSIVNQEP-VLFSVSVGENIAYG----LPDENVSKDD----IIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQR 686 (782)
Q Consensus 616 Ia~V~Q~~-~LF~gTIreNI~~G----~p~~~~s~ee----i~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQR 686 (782)
+|||.|+. ++=.-||||-+.|. .| .+++++| |+++.+..++.++ =|..||.-|..||..||.|
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp-~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKr 937 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLP-KEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKR 937 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCC-CcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhce
Confidence 99999855 56678999999885 23 2344433 6677776666654 3678999999999999999
Q ss_pred HHHHHHhccCC-CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhH--HHhcCeEEEEe-CCEEEEecCHH
Q 003981 687 IAIARALLKNA-PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLST--VQNAHQIALCS-DGRIAELGTHF 761 (782)
Q Consensus 687 IaIARALlr~p-~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLst--i~~aD~IiVLd-~G~Ive~Gth~ 761 (782)
+.||=-|+.|| .||.||||||+||+.+...|.+.++++. .|+|++.-=|++|. .+..|+++.|+ +|+.|-.|+..
T Consensus 938 LTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 938 LTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred eeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 99999999999 8999999999999999999999999886 69999999999985 58899999997 57899888743
No 385
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.91 E-value=5.4e-24 Score=237.21 Aligned_cols=208 Identities=23% Similarity=0.373 Sum_probs=170.9
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChH-hhhhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS-EWARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~-~lR~~I 616 (782)
++++|++..- .++|+||++.+||.++|.|--|||+|-+++.|.|..++.+|+|.+||++++--++. ..+.-|
T Consensus 264 l~v~~l~~~~-------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 264 LEVRNLSGGG-------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEecCCCCC-------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 5677776421 47899999999999999999999999999999999999999999999988777744 788889
Q ss_pred EEEcccC----CCCcccHHHHHHcCCCCCCCCHH-HHHHHHHHhcchhHHHhCCC---CccccccCCCCCCChhHHHHHH
Q 003981 617 SIVNQEP----VLFSVSVGENIAYGLPDENVSKD-DIIKAAKAANAHDFIISLPQ---GYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 617 a~V~Q~~----~LF~gTIreNI~~G~p~~~~s~e-ei~~A~~~a~l~dfI~~LP~---GldT~VGE~G~~LSGGQrQRIa 688 (782)
+|||-|= .+...||++||.+..- ...+.. -+..+.+.+.+.+++.+|-- +.+.++ .+||||-+|++.
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l-~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKVv 411 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASL-RRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVV 411 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhh-hhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhHH
Confidence 9999753 3557899999987621 111101 24455555666677776642 333444 579999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEe
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAEL 757 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~ 757 (782)
|||.|..+|+||||||||-++|.-+.+.|.+.|+++. +|+++|+|+-.+..+. .||||+||.+|+|+..
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999876 6899999999988765 7999999999999874
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=6.8e-24 Score=255.43 Aligned_cols=97 Identities=34% Similarity=0.492 Sum_probs=89.4
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHhcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH
Q 003981 667 GYDT-LVGERGGLLSGGQRQRIAIARALLK---NAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ 741 (782)
Q Consensus 667 GldT-~VGE~G~~LSGGQrQRIaIARALlr---~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~ 741 (782)
|++. .+++...+||||||||++|||||.+ +|+++||||||++||..+.+.+.+.|+++. +|+|+|+|+|++..++
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5544 3688889999999999999999997 599999999999999999999999999875 5899999999999999
Q ss_pred hcCeEEEE------eCCEEEEecCHHHH
Q 003981 742 NAHQIALC------SDGRIAELGTHFEL 763 (782)
Q Consensus 742 ~aD~IiVL------d~G~Ive~Gth~eL 763 (782)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999986
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=7.6e-25 Score=239.81 Aligned_cols=199 Identities=27% Similarity=0.396 Sum_probs=167.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|.++||+|+|+++ ..+++++||-|..++++|+|||+|+|||||+|++.|...|+.|.|.-.-+.. +
T Consensus 389 vi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~-----------~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK-----------L 455 (614)
T ss_pred eEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc-----------c
Confidence 48999999999843 4799999999999999999999999999999999999999999997655422 3
Q ss_pred EEEcc---cCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 617 SIVNQ---EPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 617 a~V~Q---~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
++-.| +..-.+-|.-||+.=-.|+ .-+.+++...+...++....+..| + .+||+|||.||+.||.+
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~-~~~~e~~r~ilgrfgLtgd~q~~p------~----~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPD-EKELEEMRSILGRFGLTGDAQVVP------M----SQLSDGQRRRVLFARLA 524 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccc-cchHHHHHHHHHHhCCCccccccc------h----hhcccccchhHHHHHHH
Confidence 33333 4456788888888643332 346788889999999986554443 2 57999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEE-ecCHH
Q 003981 694 LKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAE-LGTHF 761 (782)
Q Consensus 694 lr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive-~Gth~ 761 (782)
++.|.||||||||++||.++-....++|+++ .-++|+|+|..-.|.+ |++|.++++|.+.. .|.+.
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 9999999999999999999999999999986 4689999999999976 99999999999875 45543
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=1.2e-24 Score=228.86 Aligned_cols=185 Identities=18% Similarity=0.200 Sum_probs=138.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCee-C------CCCChHhhhhceEEEcccC--CCCcccHHHHHH-c
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED-L------RTFDKSEWARVVSIVNQEP--VLFSVSVGENIA-Y 636 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~d-i------~~i~~~~lR~~Ia~V~Q~~--~LF~gTIreNI~-~ 636 (782)
..++|+||+|||||||+.+|.+...+..|+++.++.+ + ...+.....-.+.+..|++ .++..+++++-. |
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888765421 1 1111223344455555653 345556555432 2
Q ss_pred CCCCCCCCHHHHHHHHHHhcchhHHHh--CCCCccccccCCC---------CCCChhHHHHHHHHHHhcc----CCCEEE
Q 003981 637 GLPDENVSKDDIIKAAKAANAHDFIIS--LPQGYDTLVGERG---------GLLSGGQRQRIAIARALLK----NAPILI 701 (782)
Q Consensus 637 G~p~~~~s~eei~~A~~~a~l~dfI~~--LP~GldT~VGE~G---------~~LSGGQrQRIaIARALlr----~p~ILI 701 (782)
.......+.+++.+.++.++++.+... +++|.-+.+.+.. ..||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 211234678889999999998643221 3556555555443 6899999999999999975 489999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHhcCeEEEEeC
Q 003981 702 LDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQNAHQIALCSD 751 (782)
Q Consensus 702 LDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~aD~IiVLd~ 751 (782)
|||||++||..+...+.+.|+++.+ +.|+|+|||+.+.+..||+|++|.+
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998865 7899999999999999999999864
No 389
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.89 E-value=1.9e-22 Score=220.39 Aligned_cols=218 Identities=24% Similarity=0.404 Sum_probs=177.4
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeC-CCCChHhhhh-
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDL-RTFDKSEWAR- 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di-~~i~~~~lR~- 614 (782)
-++++|++..-.. +.+.+++|||+|++||.+||.|-+|-|-+-|+.+|+|+..|.+|+|.++|+|+ ...++..+|+
T Consensus 257 vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 4788999986542 35689999999999999999999999999999999999999999999999997 6678777765
Q ss_pred ceEEEcccCC----CCcccHHHHHHcCCCCCC-------CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 615 VVSIVNQEPV----LFSVSVGENIAYGLPDEN-------VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 615 ~Ia~V~Q~~~----LF~gTIreNI~~G~p~~~-------~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
-++|||.|-+ ...-|+.||+.++.-+.. .+..++.+.++..--.-.|. +.|-++++ .+||||+
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr--~~~~~~~a----~~LSGGN 408 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR--APSPDAPA----RSLSGGN 408 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCcc--CCCCCcch----hhcCCcc
Confidence 5999998874 678899999988742211 33455554443221111121 44555444 5799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHH
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~ 761 (782)
.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.+++|+-.|..+. -||+|.||.+|+|+.....+
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 999999999999999999999999999999999999987665 6999999999999875 59999999999999877655
Q ss_pred H
Q 003981 762 E 762 (782)
Q Consensus 762 e 762 (782)
+
T Consensus 489 ~ 489 (501)
T COG3845 489 E 489 (501)
T ss_pred c
Confidence 4
No 390
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.88 E-value=1.5e-22 Score=211.37 Aligned_cols=199 Identities=23% Similarity=0.273 Sum_probs=145.3
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEE--EECCeeCCCCChHhhhhce--EEEcccCCCCcccHHHHHHc
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI--TVGGEDLRTFDKSEWARVV--SIVNQEPVLFSVSVGENIAY 636 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I--~idG~di~~i~~~~lR~~I--a~V~Q~~~LF~gTIreNI~~ 636 (782)
+.+.+||+++|+|++|+|||||++.+.+.++...+++ .+-...-+..+..++.+.+ .+|-.+. +.+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence 5789999999999999999999999999988764432 3222222234555665554 1111111 1111221211
Q ss_pred CCCCCCCCHHHHHHHHH--H-----hcchhHHHhCCCCccccccCCCCCCChhH--------HHHHHHHHHhccCCCEEE
Q 003981 637 GLPDENVSKDDIIKAAK--A-----ANAHDFIISLPQGYDTLVGERGGLLSGGQ--------RQRIAIARALLKNAPILI 701 (782)
Q Consensus 637 G~p~~~~s~eei~~A~~--~-----a~l~dfI~~LP~GldT~VGE~G~~LSGGQ--------rQRIaIARALlr~p~ILI 701 (782)
. +.-+..|.. . .-+-|-+.++|+++++.+|+.|.++|||| |||+++||+++++++|.+
T Consensus 88 ~-------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 88 A-------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred H-------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 1 111111111 1 22446688999999999999999999999 999999999999999999
Q ss_pred EeCCCCCCCHHHHHH-HHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhh
Q 003981 702 LDEATSALDAVSERL-VQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQR 778 (782)
Q Consensus 702 LDEaTSALD~~tE~~-I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 778 (782)
| ||+++|+.+|.. ++ ++++. .++|.|+++||+++..++|.|.||++|++ |++|+..++.|+.++..+.
T Consensus 161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~~r~ 230 (249)
T cd01128 161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWLLRR 230 (249)
T ss_pred e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHHHHH
Confidence 9 999999866654 43 44444 68999999999999999999999999997 8899988889998877654
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=7.2e-22 Score=200.60 Aligned_cols=170 Identities=23% Similarity=0.269 Sum_probs=118.9
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCe---eCCCCChHhhhhceEEEcccCCCCcccHHH
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE---DLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~---di~~i~~~~lR~~Ia~V~Q~~~LF~gTIre 632 (782)
++++++++.+| ..+|+|++|||||||+..|.-.+..... ....|. ++-... .-...|.++.|+.-++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA----- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCC--CCeEEEEEEEEcCCccC-----
Confidence 35667777776 7799999999999999998743332211 111122 111111 12455888888876665
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh----ccCCCEEEEeCCCCC
Q 003981 633 NIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL----LKNAPILILDEATSA 708 (782)
Q Consensus 633 NI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL----lr~p~ILILDEaTSA 708 (782)
| +....+.++ +.+++.. .+-. .+...+||||||||++||||+ +.+|+++||||||++
T Consensus 83 ~-----~~~~~~~~~---------~~~~l~~-~~~~----~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~g 143 (198)
T cd03276 83 N-----PLCVLSQDM---------ARSFLTS-NKAA----VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVF 143 (198)
T ss_pred C-----cCCHHHHHH---------HHHHhcc-cccc----CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccc
Confidence 2 111111222 3333333 2222 345568999999999999999 699999999999999
Q ss_pred CCHHHHHHHHHHHHHhcC----CcEEEEEecChhHHHhcCeEEEEeCCE
Q 003981 709 LDAVSERLVQDALNHLMK----GRTTLVIAHRLSTVQNAHQIALCSDGR 753 (782)
Q Consensus 709 LD~~tE~~I~~~L~~l~~----~kTvIvIaHRLsti~~aD~IiVLd~G~ 753 (782)
||..+...+.+.|++..+ ++|+|+++|.+..+.+.|+|-||..|+
T Consensus 144 lD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 144 MDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999999999988643 358888999999999999999998754
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.6e-21 Score=210.11 Aligned_cols=195 Identities=23% Similarity=0.302 Sum_probs=161.2
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.+++.+|+|.|+.. +.+.+.+++++++.-+++++||+.|+||||+++++.+-..|..|.+-+.+. .+|
T Consensus 362 ~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r-----------~ri 429 (582)
T KOG0062|consen 362 NLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR-----------LRI 429 (582)
T ss_pred eeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc-----------cee
Confidence 58999999999732 227899999999999999999999999999999999999999999988774 568
Q ss_pred EEEcccCCCC-cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCC-CCCChhHHHHHHHHHHhc
Q 003981 617 SIVNQEPVLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERG-GLLSGGQRQRIAIARALL 694 (782)
Q Consensus 617 a~V~Q~~~LF-~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G-~~LSGGQrQRIaIARALl 694 (782)
+|-.|...=| +-.+..=-.+-+-.+.-++||+++.|...|+...+. -.. ..||||||-|+++|-...
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la-----------~~si~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELA-----------LQSIASLSGGQKSRVAFAACTW 498 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhh-----------hccccccCCcchhHHHHHHHhc
Confidence 8888865533 222221111211123458999999997777665543 333 569999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEEE
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIAE 756 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive 756 (782)
.+|.+|||||||..||-++-..+-++|+++. --||+|+|..+.+.. |+.+.|.++|+|..
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999873 479999999999987 99999999999975
No 393
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.86 E-value=7.9e-21 Score=208.51 Aligned_cols=223 Identities=24% Similarity=0.312 Sum_probs=150.1
Q ss_pred CcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhh
Q 003981 534 WSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWA 613 (782)
Q Consensus 534 ~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR 613 (782)
...+|.++|++++|. +.++++|+.|++.+|+++||+|++||||||+++.|.|--.|..=++-+-=. -+++.+..+.
T Consensus 72 ~s~dvk~~sls~s~~---g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~l-s~e~~ps~~~ 147 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFH---GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLL-SREIEPSEKQ 147 (614)
T ss_pred ccccceeeeeeeccC---CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhh-cccCCCchHH
Confidence 345799999999996 457999999999999999999999999999999999988886555432110 0112221111
Q ss_pred hceEEEcccCCCCcccHHHHHHc-------CCCC-CCCCHHHHHHHHHHhcchhHHHh----C-CCCcc-ccccCCCCCC
Q 003981 614 RVVSIVNQEPVLFSVSVGENIAY-------GLPD-ENVSKDDIIKAAKAANAHDFIIS----L-PQGYD-TLVGERGGLL 679 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~gTIreNI~~-------G~p~-~~~s~eei~~A~~~a~l~dfI~~----L-P~Gld-T~VGE~G~~L 679 (782)
. -|....+..+-+--+.+ ..++ +...-+++++-+...+.+.|=.+ | ..|+. ...--.-.+|
T Consensus 148 a-----v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~ 222 (614)
T KOG0927|consen 148 A-----VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDL 222 (614)
T ss_pred H-----HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhcc
Confidence 1 11111122222222211 1110 00011111111111111111000 0 11333 2233445789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCE-EEEe
Q 003981 680 SGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGR-IAEL 757 (782)
Q Consensus 680 SGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~-Ive~ 757 (782)
|||||-|++|||||+.+|++|+|||||.+||.++-.-+.+-|.+..+. |.++++|.-.++.. |-+|+-|++++ +--.
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeec
Confidence 999999999999999999999999999999999999999999886433 89999999999977 99999999999 6678
Q ss_pred cCHHHHHhc
Q 003981 758 GTHFELLAR 766 (782)
Q Consensus 758 Gth~eLl~~ 766 (782)
|++++.+..
T Consensus 302 Gnydqy~~t 310 (614)
T KOG0927|consen 302 GNYDQYVKT 310 (614)
T ss_pred CCHHHHhhH
Confidence 999988764
No 394
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.85 E-value=7.6e-21 Score=189.71 Aligned_cols=85 Identities=28% Similarity=0.374 Sum_probs=79.0
Q ss_pred HHhCCCCccccccCCCCCCChhHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEec
Q 003981 661 IISLPQGYDTLVGERGGLLSGGQRQRIAIARALL----KNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAH 735 (782)
Q Consensus 661 I~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl----r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaH 735 (782)
+..+|+|..|++ ||||||||++||||+. .+|+++||||||++||..+.+.+.+.|+++.+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 567999999999 9999999999999984 79999999999999999999999999988754 589999999
Q ss_pred ChhHHHhcCeEEEEeC
Q 003981 736 RLSTVQNAHQIALCSD 751 (782)
Q Consensus 736 RLsti~~aD~IiVLd~ 751 (782)
+++.+..||+++++++
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999876
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=3e-20 Score=199.90 Aligned_cols=171 Identities=27% Similarity=0.419 Sum_probs=133.0
Q ss_pred ceeeeeEEE-----eCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCC-CCcc
Q 003981 555 ILNGLNLTL-----KSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPV-LFSV 628 (782)
Q Consensus 555 vL~~Isl~I-----~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~-LF~g 628 (782)
.+.++.|++ ..||.++++||+|-||||++++|+|..+|++|. ..++ .|+|=||-.. -|+|
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~g 416 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDG 416 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCC
Confidence 355666665 456889999999999999999999999999998 2222 2999999543 3999
Q ss_pred cHHHHHHcCCCCCCCCHHHHH-HHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 003981 629 SVGENIAYGLPDENVSKDDII-KAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATS 707 (782)
Q Consensus 629 TIreNI~~G~p~~~~s~eei~-~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTS 707 (782)
||++=+.-..+. .....-++ +.++--++++ .+-.+-.+||||+.||+|||-||.|++|+++||||++
T Consensus 417 tV~~~l~~~~~~-~~~~s~~~~ei~~pl~l~~-----------i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA 484 (591)
T COG1245 417 TVEDLLRSAIRS-AFGSSYFKTEIVKPLNLED-----------LLERPVDELSGGELQRVAIAAALSREADLYLLDEPSA 484 (591)
T ss_pred cHHHHHHHhhhh-hcccchhHHhhcCccchHH-----------HHhcccccCCchhHHHHHHHHHhccccCEEEecCchh
Confidence 999987644221 12222222 2333333333 3334456799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeC
Q 003981 708 ALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSD 751 (782)
Q Consensus 708 ALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~ 751 (782)
-||.+..-.+-++|++.. .++|.++|-|.+..+.. +|+++|.+.
T Consensus 485 ~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 485 YLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred hccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 999999999999998876 57899999999998866 899999974
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.5e-20 Score=198.31 Aligned_cols=198 Identities=25% Similarity=0.328 Sum_probs=151.9
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-+-+.||+|.||+ ..|.+++++|-|.--..||||||+|-|||||++||.|-++|++|+.+=+- |=+|
T Consensus 586 vLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 3678999999984 46899999999999999999999999999999999999999999876443 3358
Q ss_pred EEEcccCC--C-CcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 617 SIVNQEPV--L-FSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 617 a~V~Q~~~--L-F~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
|+-.|..- | -..|-.|-+.-+ + +.++++-.+++-.-++..- -+|. .-..||||||.|+++|--.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~--F-Nlpyq~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRK--F-NLPYQEARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELA 719 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHh--c-CCChHHHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHh
Confidence 88877642 1 233555555433 2 3566776666655544321 1222 2357999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCe-EEEEeCCEEEE-ecCHHH
Q 003981 694 LKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQ-IALCSDGRIAE-LGTHFE 762 (782)
Q Consensus 694 lr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~-IiVLd~G~Ive-~Gth~e 762 (782)
++.|+||||||||.+||.++-..+-++|+++. -.||+|+|.-..|...|. .+|+++-.|-| .|.+++
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 99999999999999999999999999999873 579999998887766553 45666655554 355543
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=8.6e-21 Score=207.14 Aligned_cols=204 Identities=26% Similarity=0.330 Sum_probs=143.7
Q ss_pred cccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhh
Q 003981 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~ 614 (782)
..+|..+|.+.+|. ++..|++-++++..|-+.++||++|+|||||++.|.. |.|.+-.+ . +++|-
T Consensus 78 ~~Di~~~~fdLa~G---~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~v--e----qE~~g 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG---GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHV--E----QEVRG 142 (582)
T ss_pred ccceeeeeeeeeec---chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCc--h----hheec
Confidence 45799999999996 4579999999999999999999999999999999998 44322221 1 11111
Q ss_pred ceEEEcccCCCCcccHHHHHHcCCCC--CCCCHHHHHH-HHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 615 VVSIVNQEPVLFSVSVGENIAYGLPD--ENVSKDDIIK-AAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~gTIreNI~~G~p~--~~~s~eei~~-A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
.--...|+ .+=.+|-|.-+..-.+. ...+.+||.. +++-.+..+..+..| -..||||-|=|+||||
T Consensus 143 ~~t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 143 DDTEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALAR 211 (582)
T ss_pred cchHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHH
Confidence 11111111 12233333333321000 0013345544 554444444444444 2469999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEE-EecCHHHHHhc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIA-ELGTHFELLAR 766 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Iv-e~Gth~eLl~~ 766 (782)
|++++||||+|||||..||..+-.-+.+-|..+. .|+|+|+|.-+.+.. |--||.+++=++- ..|++++-.++
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 9999999999999999999999999999998863 899999999988866 7788888886663 46777776654
No 398
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=9e-20 Score=178.26 Aligned_cols=221 Identities=26% Similarity=0.340 Sum_probs=171.2
Q ss_pred EEeeEEEcCCC-CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC----CCccEEEECCeeCCCCChHhhhh
Q 003981 540 LEDVYFSYPLR-PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE----PTGGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 540 f~nVsF~Y~~~-~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~----p~~G~I~idG~di~~i~~~~lR~ 614 (782)
++|++..+... .-..+.+++|++...||.-++||+||||||-++|.|+|... .+.-+.++|++|+-.+++.+-|+
T Consensus 6 IrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk 85 (330)
T COG4170 6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred ccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhh
Confidence 44555444321 23468999999999999999999999999999999999865 45566778899999999988886
Q ss_pred ----ceEEEcccCCCCc---cc----HHHHHHcCCCCC-------CCCHHHHHHHHHHhcchhH--H-HhCCCCcccccc
Q 003981 615 ----VVSIVNQEPVLFS---VS----VGENIAYGLPDE-------NVSKDDIIKAAKAANAHDF--I-ISLPQGYDTLVG 673 (782)
Q Consensus 615 ----~Ia~V~Q~~~LF~---gT----IreNI~~G~p~~-------~~s~eei~~A~~~a~l~df--I-~~LP~GldT~VG 673 (782)
.|++++|||.-.- .+ +-+||-.+. +. .-...+-++.+.+++++|- | .+-|
T Consensus 86 ~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wT-fkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP-------- 156 (330)
T COG4170 86 LVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWT-YKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP-------- 156 (330)
T ss_pred hhccchhhhhcCchhhcChHHHHHHHHHhhCcccc-ccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc--------
Confidence 5789999997432 23 335553321 00 1234556677888888753 2 2333
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEe
Q 003981 674 ERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCS 750 (782)
Q Consensus 674 E~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd 750 (782)
-.|-.|+-|++.||-|+..+|++||-||||.++|+.|..+|...|.++. .+.|+++|+|.+.++.. ||+|-||-
T Consensus 157 ---~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY 233 (330)
T COG4170 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY 233 (330)
T ss_pred ---chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE
Confidence 2355678899999999999999999999999999999999999987765 46688889999999855 99999999
Q ss_pred CCEEEEecCHHHHHhcc-CchHH
Q 003981 751 DGRIAELGTHFELLARK-GQYAS 772 (782)
Q Consensus 751 ~G~Ive~Gth~eLl~~~-g~Y~~ 772 (782)
-|+-+|.+.-++|++.. -.|.+
T Consensus 234 CGQ~~ESa~~e~l~~~PhHPYTq 256 (330)
T COG4170 234 CGQTVESAPSEELVTMPHHPYTQ 256 (330)
T ss_pred ecccccccchhHHhcCCCCchHH
Confidence 99999999999999863 44544
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=4.9e-20 Score=189.15 Aligned_cols=180 Identities=18% Similarity=0.221 Sum_probs=116.4
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCC---Cccc----
Q 003981 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVL---FSVS---- 629 (782)
Q Consensus 557 ~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~L---F~gT---- 629 (782)
+++.++..+| ..+|+|++|||||||+..|.-..-...... ..+ -...++ +..=.++.++ |...
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~---i~~g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEF---VKRGCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHH---hhCCCCcEEEEEEEEeCCCcc
Confidence 4455555554 668999999999999998854442111100 000 011111 1110111110 1111
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH----hccCCCEEEEeCC
Q 003981 630 VGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA----LLKNAPILILDEA 705 (782)
Q Consensus 630 IreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA----Llr~p~ILILDEa 705 (782)
..+|+++. .+.+.+.++++.... |.+..+|.+.+.. ..+...||||||||+.+|++ ++.+|+++|+|||
T Consensus 85 ~~~n~~~~-----~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP 157 (213)
T cd03277 85 QVDNLCQF-----LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEI 157 (213)
T ss_pred ccCCceEE-----EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecc
Confidence 23444432 345667777766555 6667788776543 55778999999999887754 4689999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcC--C-cEEEEEecChhHH-HhcC--eEEEEeCCE
Q 003981 706 TSALDAVSERLVQDALNHLMK--G-RTTLVIAHRLSTV-QNAH--QIALCSDGR 753 (782)
Q Consensus 706 TSALD~~tE~~I~~~L~~l~~--~-kTvIvIaHRLsti-~~aD--~IiVLd~G~ 753 (782)
|++||+.+.+.+.+.|.+..+ + .|+|+|||++..+ ..|| +|+||++|+
T Consensus 158 ~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 158 NQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 999999999999999988754 3 4799999997544 4465 677777775
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.7e-19 Score=190.18 Aligned_cols=77 Identities=23% Similarity=0.319 Sum_probs=71.5
Q ss_pred CCChhHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCE
Q 003981 678 LLSGGQRQRIAIARALLK----NAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGR 753 (782)
Q Consensus 678 ~LSGGQrQRIaIARALlr----~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~ 753 (782)
.||||||||++|||+++. +|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||++.....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999999888899999999999999999999999874
Q ss_pred E
Q 003981 754 I 754 (782)
Q Consensus 754 I 754 (782)
.
T Consensus 250 ~ 250 (276)
T cd03241 250 E 250 (276)
T ss_pred C
Confidence 3
No 401
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=1.8e-19 Score=215.69 Aligned_cols=209 Identities=30% Similarity=0.446 Sum_probs=173.3
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC---CccEEEECCeeCCCCChHhhhhceEEEcccCCCCc-
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP---TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS- 627 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p---~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~- 627 (782)
...+|+|+|.-++||+.+-+.||.|||||||++.|+|-.+- ..|+|..||.+.+++-. ++.++|.+|+...|.
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPE 203 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccce
Confidence 34789999999999999999999999999999999998764 35799999999999887 888999999888875
Q ss_pred ccHHHHHHcCC----C---CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCC-CCChhHHHHHHHHHHhccCCCE
Q 003981 628 VSVGENIAYGL----P---DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGG-LLSGGQRQRIAIARALLKNAPI 699 (782)
Q Consensus 628 gTIreNI~~G~----p---~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~-~LSGGQrQRIaIARALlr~p~I 699 (782)
-||||-|.|.. | .++.+++|-.++....-++ |-.|-...||.||.+.. ..|||||.|+++|-+++.++++
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lk--ilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~ 281 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLK--ILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASI 281 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHH--HhCchhhccceecccccccccCcccceeeeeeeeecCcce
Confidence 79999998852 1 1133444433221111122 23577889999997764 6999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCh--hHHHhcCeEEEEeCCEEEEecCHHHHHh
Q 003981 700 LILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRL--STVQNAHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 700 LILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRL--sti~~aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
+.+||+|-+||+.|.-+|.++|+++.+ +.|.++.=|+. .+..--|+|++|.+|++|-+|+.++.+.
T Consensus 282 ~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 282 LFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999999998753 67777777875 4678899999999999999999998874
No 402
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=5.6e-19 Score=201.75 Aligned_cols=104 Identities=33% Similarity=0.474 Sum_probs=94.9
Q ss_pred cccCCCCCCChhHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeE
Q 003981 671 LVGERGGLLSGGQRQRIAIARALLKNA---PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQI 746 (782)
Q Consensus 671 ~VGE~G~~LSGGQrQRIaIARALlr~p---~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~I 746 (782)
.+|+...+|||||.|||-||.-|.|++ -++||||||.+|-.+--+++.+.|.++. +|.|||+|-|.|..|+.||.|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 469999999999999999999999998 8999999999999988899999998876 699999999999999999999
Q ss_pred EEE------eCCEEEEecCHHHHHhccCchHHHH
Q 003981 747 ALC------SDGRIAELGTHFELLARKGQYASLV 774 (782)
Q Consensus 747 iVL------d~G~Ive~Gth~eLl~~~g~Y~~L~ 774 (782)
+=| +.|+||.+||+||+.+..+.|-.-+
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~y 928 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKY 928 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCccchhHHH
Confidence 998 6799999999999998766664443
No 403
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.79 E-value=9.4e-19 Score=170.87 Aligned_cols=210 Identities=26% Similarity=0.383 Sum_probs=157.0
Q ss_pred cccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC-CC-----
Q 003981 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT-FD----- 608 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~-i~----- 608 (782)
+..|++.++.|+|+. ..|++-|+|+++|+|....+||.+|||||||+|+|.|-.-...|.|.+.|.+--. -.
T Consensus 11 ~~aievsgl~f~y~~--~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV--SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEeccc--CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 457999999999984 3489999999999999999999999999999999999999889999999985322 11
Q ss_pred -----hHhhhhceEEEcccCCCCcccHHHHHHcCCCCCC-CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChh
Q 003981 609 -----KSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGG 682 (782)
Q Consensus 609 -----~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~-~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGG 682 (782)
-.+|++.++..- |..|--+==.+-+.||-..++ ...|+++ +=+|-.+-=|=..+|-|
T Consensus 89 dl~YLGgeW~~~~~~ag-evplq~D~sae~mifgV~g~dp~Rre~LI----------------~iLDIdl~WRmHkvSDG 151 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVGGDDPERREKLI----------------DILDIDLRWRMHKVSDG 151 (291)
T ss_pred ceeEecccccccccccc-cccccccccHHHHHhhccCCChhHhhhhh----------------hheeccceEEEeecccc
Confidence 123444444333 222222111222333321110 1112222 12344444566789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecC
Q 003981 683 QRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGT 759 (782)
Q Consensus 683 QrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gt 759 (782)
||.|+.|+-.|+++=++|+|||-|--||......+.+-+++.. +++|+|..||=..-+.. +.+++.|.+|+|+..-.
T Consensus 152 qrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~ 231 (291)
T KOG2355|consen 152 QRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLK 231 (291)
T ss_pred chhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccc
Confidence 9999999999999999999999999999999999999997754 68999999999988866 89999999999998555
Q ss_pred HHHH
Q 003981 760 HFEL 763 (782)
Q Consensus 760 h~eL 763 (782)
+++.
T Consensus 232 ~~~i 235 (291)
T KOG2355|consen 232 YQKI 235 (291)
T ss_pred cchh
Confidence 5444
No 404
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.79 E-value=3.4e-19 Score=181.49 Aligned_cols=145 Identities=15% Similarity=0.188 Sum_probs=110.2
Q ss_pred eeeeeEEEeCCc-EEEEECCCCCcHHHHHHHHH--------cCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCC
Q 003981 556 LNGLNLTLKSGS-VTALVGSSGAGKSTIVQLLA--------RFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLF 626 (782)
Q Consensus 556 L~~Isl~I~~Ge-~vaIVG~SGSGKSTLl~LL~--------gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF 626 (782)
.-++||++.+|+ .++|+||+|||||||++.|. |++-|....+ .++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 457899999996 69999999999999999998 6666542211 1344444311
Q ss_pred cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC
Q 003981 627 SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEAT 706 (782)
Q Consensus 627 ~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaT 706 (782)
.++ .+..+.++-..+|+|+|||..|++++ .+|++++|||||
T Consensus 78 --------~lg------------------------------~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~ 118 (200)
T cd03280 78 --------DIG------------------------------DEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELG 118 (200)
T ss_pred --------ecC------------------------------chhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCC
Confidence 111 00112233358999999999999995 899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHhc-CCcEEEEEecChhHHHhcCeEEEEeCCEEEEec
Q 003981 707 SALDAVSERLVQ-DALNHLM-KGRTTLVIAHRLSTVQNAHQIALCSDGRIAELG 758 (782)
Q Consensus 707 SALD~~tE~~I~-~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~G 758 (782)
+++|+.+...+. +.++.+. .++|+|++||.....+.||++++|++|+++..+
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 999998887775 4566554 478999999998777889999999999998663
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=4.2e-18 Score=213.94 Aligned_cols=202 Identities=20% Similarity=0.223 Sum_probs=145.8
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHH------cC---CCCCccEEEECCeeCCCCC----------hHhhhhce
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA------RF---YEPTGGRITVGGEDLRTFD----------KSEWARVV 616 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~------gl---y~p~~G~I~idG~di~~i~----------~~~lR~~I 616 (782)
|+||+++||-|..++|.|.||||||||++=.+ .+ ++.-+--|.||-.||..-+ -+.+|+-+
T Consensus 1506 Lk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~lF 1585 (1809)
T PRK00635 1506 IQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNFY 1585 (1809)
T ss_pred CCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHHH
Confidence 89999999999999999999999999998544 11 1333445778866664433 23345444
Q ss_pred EEEcc------cC--C--------------------------------------------------------CCcccHHH
Q 003981 617 SIVNQ------EP--V--------------------------------------------------------LFSVSVGE 632 (782)
Q Consensus 617 a~V~Q------~~--~--------------------------------------------------------LF~gTIre 632 (782)
+-.|+ .+ | +++.||.|
T Consensus 1586 A~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~e 1665 (1809)
T PRK00635 1586 ASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIEE 1665 (1809)
T ss_pred hcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHHH
Confidence 32211 11 1 12223333
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC---CCEEEEeCCCCCC
Q 003981 633 NIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN---APILILDEATSAL 709 (782)
Q Consensus 633 NI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~---p~ILILDEaTSAL 709 (782)
-+.|... ..+|.+. -..+..+--||-+ +|+.-.+|||||.|||-||.-|.++ +.++||||||.+|
T Consensus 1666 a~~~F~~-----~~~i~~~------L~~L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GL 1733 (1809)
T PRK00635 1666 VAETFPF-----LKKIQKP------LQALIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSL 1733 (1809)
T ss_pred HHHHhhc-----cHHHHHH------HHHHHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCC
Confidence 3322210 0111111 1223334446654 6999999999999999999999976 7899999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEE------eCCEEEEecCHHHHHhccCc
Q 003981 710 DAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALC------SDGRIAELGTHFELLARKGQ 769 (782)
Q Consensus 710 D~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVL------d~G~Ive~Gth~eLl~~~g~ 769 (782)
+...-+++.+.|+++. +|.|+|+|-|.+..|+.||.|+-| +.|+||.+||++|+.+...-
T Consensus 1734 h~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S 1800 (1809)
T PRK00635 1734 DNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDS 1800 (1809)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCC
Confidence 9998889999988875 689999999999999999999999 56899999999999976533
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.77 E-value=3.6e-18 Score=181.78 Aligned_cols=178 Identities=27% Similarity=0.482 Sum_probs=139.9
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC--------CCCCccEEEECCeeCCCCChHhhhhceEEEcc--c
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--------YEPTGGRITVGGEDLRTFDKSEWARVVSIVNQ--E 622 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl--------y~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q--~ 622 (782)
.++|+||||+|+||+.++|||+|||||||++++|+|. |.|++|.|.+--..+. +++|- |
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~E 464 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYE 464 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-----------hccCcccc
Confidence 4679999999999999999999999999999999986 6799999987443232 23332 3
Q ss_pred CCCCcccHHHHHHcCCCCCCCCH-HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 003981 623 PVLFSVSVGENIAYGLPDENVSK-DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILI 701 (782)
Q Consensus 623 ~~LF~gTIreNI~~G~p~~~~s~-eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILI 701 (782)
|.+=.-||-|.+.= ...| .--.+.++.+++.|-+. |-. .=..||-|||-|..||+++-..|.+++
T Consensus 465 p~f~~~tilehl~s-----~tGD~~~AveILnraGlsDAvl-----yRr----~f~ELStGQKeR~KLAkllaerpn~~~ 530 (593)
T COG2401 465 PEFGEVTILEHLRS-----KTGDLNAAVEILNRAGLSDAVL-----YRR----KFSELSTGQKERAKLAKLLAERPNVLL 530 (593)
T ss_pred cccCchhHHHHHhh-----ccCchhHHHHHHHhhccchhhh-----hhc----cHhhcCcchHHHHHHHHHHhcCCCcEE
Confidence 43334477777641 1122 23456778888887543 222 234599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh--cCeEEEEeCCEEE
Q 003981 702 LDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN--AHQIALCSDGRIA 755 (782)
Q Consensus 702 LDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~--aD~IiVLd~G~Iv 755 (782)
-||.-|.||..|...|...|.++. .+-|.++||||...+.. -|.++.+-=|.+.
T Consensus 531 iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 531 IDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 999999999999999999998887 68899999999998866 4888887766654
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.74 E-value=1.6e-17 Score=163.40 Aligned_cols=134 Identities=25% Similarity=0.340 Sum_probs=99.1
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE-EEcccCCCCcccHHHHHHcCCC
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS-IVNQEPVLFSVSVGENIAYGLP 639 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia-~V~Q~~~LF~gTIreNI~~G~p 639 (782)
+.+.++..+.|+||+||||||+++.+.-..-..+|.+.-... + +.+ .+++...-| .+
T Consensus 16 i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~-~----------~~g~~~~~~~~~~--------i~--- 73 (162)
T cd03227 16 VTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG-V----------KAGCIVAAVSAEL--------IF--- 73 (162)
T ss_pred EecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc-c----------cCCCcceeeEEEE--------eh---
Confidence 444555799999999999999999976555445554443110 0 011 122211111 00
Q ss_pred CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHH
Q 003981 640 DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK----NAPILILDEATSALDAVSER 715 (782)
Q Consensus 640 ~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr----~p~ILILDEaTSALD~~tE~ 715 (782)
+. ..||+||+||++|||+|.. +|+++|||||++++|+....
T Consensus 74 ------------------------------~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~ 118 (162)
T cd03227 74 ------------------------------TR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQ 118 (162)
T ss_pred ------------------------------he-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHH
Confidence 00 0199999999999999986 78999999999999999999
Q ss_pred HHHHHHHHhcC-CcEEEEEecChhHHHhcCeEEEEeC
Q 003981 716 LVQDALNHLMK-GRTTLVIAHRLSTVQNAHQIALCSD 751 (782)
Q Consensus 716 ~I~~~L~~l~~-~kTvIvIaHRLsti~~aD~IiVLd~ 751 (782)
.+.+.+.++.+ ++|+|++||++.....+|++++|+.
T Consensus 119 ~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 119 ALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99999887643 5899999999999999999999964
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.72 E-value=5.7e-17 Score=174.85 Aligned_cols=196 Identities=26% Similarity=0.354 Sum_probs=132.0
Q ss_pred eeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc-eEEEc
Q 003981 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV-VSIVN 620 (782)
Q Consensus 542 nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~-Ia~V~ 620 (782)
++.-+|.. +.-.|.++- ..++|+.+||+|++|-||||-+++|+|...|.=|+- ++-+ +-++.-++ =|-=-
T Consensus 79 e~vHRYg~--NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp----~wdeVi~~FrGtEL 149 (591)
T COG1245 79 EVVHRYGV--NGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPP----SWDEVIKRFRGTEL 149 (591)
T ss_pred cceeeccC--CceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCC----CHHHHHHHhhhhHH
Confidence 56778863 223333332 357999999999999999999999999999987753 3311 11111111 01111
Q ss_pred ccCCCCcccHHHHHHcC-CCC-----CCCCHHHHHHHHHHh----cchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 621 QEPVLFSVSVGENIAYG-LPD-----ENVSKDDIIKAAKAA----NAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 621 Q~~~LF~gTIreNI~~G-~p~-----~~~s~eei~~A~~~a----~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
|+- |.+=..+||+-- +|. +.+=.-.+.+.++++ ..++.|+.| +++-.+...-..||||+-||+|||
T Consensus 150 q~Y--F~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l--~L~nvl~r~v~~LSGGELQr~aIa 225 (591)
T COG1245 150 QNY--FKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERL--GLENVLDRDVSELSGGELQRVAIA 225 (591)
T ss_pred HHH--HHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHh--cchhhhhhhhhhcCchHHHHHHHH
Confidence 211 111111222211 010 001111233333333 455666665 677777777788999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHh-cCeEEEEe
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQN-AHQIALCS 750 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~-aD~IiVLd 750 (782)
-|++|+++++++|||||-||....-..-+.|+++.+ +++||+|-|.|+.+.. +|-|-++-
T Consensus 226 a~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 226 AALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 999999999999999999999988888899999887 6999999999999966 89888775
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.71 E-value=3.8e-17 Score=168.85 Aligned_cols=153 Identities=17% Similarity=0.132 Sum_probs=112.8
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE-EEcccCCCCcccH
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS-IVNQEPVLFSVSV 630 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia-~V~Q~~~LF~gTI 630 (782)
...+.+|+++++++|+.++|+||+||||||+++.+.- -.+..++| +||.+...+. +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~ 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--I 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--c
Confidence 3478999999999999999999999999999999981 23455565 6776642221 1
Q ss_pred HHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh--ccCCCEEEEeCC---
Q 003981 631 GENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL--LKNAPILILDEA--- 705 (782)
Q Consensus 631 reNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL--lr~p~ILILDEa--- 705 (782)
.|+| ....++.|. . ..++|.|++|+..+|+++ +.+|+++|||||
T Consensus 73 ~~~i-----------------l~~~~l~d~----------~----~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 73 VDCI-----------------LARVGASDS----------Q----LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ccee-----------------Eeeeccccc----------h----hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 1111 111112111 1 356999999999999999 999999999999
Q ss_pred CCCCCHHHHHHH-HHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecC
Q 003981 706 TSALDAVSERLV-QDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGT 759 (782)
Q Consensus 706 TSALD~~tE~~I-~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gt 759 (782)
|+.+|....... .+.+.+ .+++|+|++||.....+.||++..+++|++...++
T Consensus 122 T~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999665433 255543 24799999999755566699999999999977653
No 410
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.70 E-value=1.3e-17 Score=150.44 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=72.7
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIre 632 (782)
.++|++++|++++|+.++|+||||||||||+++++ +|+|.++|.|+..++.++.++.+++++|+ +|.+||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999987 89999999999999999999999999999 99999999
Q ss_pred HHHc
Q 003981 633 NIAY 636 (782)
Q Consensus 633 NI~~ 636 (782)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9987
No 411
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=2.2e-16 Score=168.30 Aligned_cols=190 Identities=22% Similarity=0.271 Sum_probs=122.0
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----------------------------------------Ccc
Q 003981 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----------------------------------------TGG 595 (782)
Q Consensus 557 ~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-----------------------------------------~~G 595 (782)
++.++++.+| .++|+|++|||||||+..|.-+... .+.
T Consensus 13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~~ 91 (270)
T cd03242 13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGGR 91 (270)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCce
Confidence 4456777776 6889999999999998876433210 011
Q ss_pred EEEECCeeCCC-CChHhhhhceEEEcccCCCCcccHHHHHHcC----CCCCCCCHH----HHHHHHHHhcchhHHHhCCC
Q 003981 596 RITVGGEDLRT-FDKSEWARVVSIVNQEPVLFSVSVGENIAYG----LPDENVSKD----DIIKAAKAANAHDFIISLPQ 666 (782)
Q Consensus 596 ~I~idG~di~~-i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G----~p~~~~s~e----ei~~A~~~a~l~dfI~~LP~ 666 (782)
.+.+||..++. -+...+-..|.+.+++..|+.++-.+-..|- .+- ...+. ++.++.+.- .+ +.+-|+
T Consensus 92 ~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~-~~~y~~~~~~~~~~~~~~--~~-~~~g~~ 167 (270)
T cd03242 92 KARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQL-EPAYAHVLSEYQKALRQR--NA-LLKGPH 167 (270)
T ss_pred EEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH--HH-HhCCCC
Confidence 34566766554 1223334457777888888855444433332 110 11121 222222211 11 122466
Q ss_pred CccccccCCCC----CCChhHHHHHHHHHHh---------ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 003981 667 GYDTLVGERGG----LLSGGQRQRIAIARAL---------LKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVI 733 (782)
Q Consensus 667 GldT~VGE~G~----~LSGGQrQRIaIARAL---------lr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvI 733 (782)
..+..+.-++. -+|+||||+++|||+| +++|+|+||||||++||+...+.+.+.|.+.. .++++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEE
Confidence 66666554444 3899999999999997 48999999999999999999999999998752 45555
Q ss_pred ecChhHHHh-c---CeEEEEeCCEE
Q 003981 734 AHRLSTVQN-A---HQIALCSDGRI 754 (782)
Q Consensus 734 aHRLsti~~-a---D~IiVLd~G~I 754 (782)
+|....+.+ | ++|+.|++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred eCCchhccchhccCccEEEEeCcEE
Confidence 555444433 4 78999999986
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.68 E-value=2e-16 Score=191.61 Aligned_cols=100 Identities=30% Similarity=0.456 Sum_probs=90.2
Q ss_pred Ccccc-ccCCCCCCChhHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh
Q 003981 667 GYDTL-VGERGGLLSGGQRQRIAIARALLKNA--PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN 742 (782)
Q Consensus 667 GldT~-VGE~G~~LSGGQrQRIaIARALlr~p--~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~ 742 (782)
|++.. ....-.+|||||||||+|||||..+| ++|||||||++||+...+.+.+.|+++. +|+|+|+|+|++..+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 55433 45667789999999999999999997 9999999999999999999999998886 48999999999999999
Q ss_pred cCeEEEE------eCCEEEEecCHHHHHhc
Q 003981 743 AHQIALC------SDGRIAELGTHFELLAR 766 (782)
Q Consensus 743 aD~IiVL------d~G~Ive~Gth~eLl~~ 766 (782)
||+|++| ++|+|+..|+.+|+.+.
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998654
No 413
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=9.6e-17 Score=193.95 Aligned_cols=95 Identities=28% Similarity=0.425 Sum_probs=88.2
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEE
Q 003981 672 VGERGGLLSGGQRQRIAIARALLKNA--PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIAL 748 (782)
Q Consensus 672 VGE~G~~LSGGQrQRIaIARALlr~p--~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiV 748 (782)
.+....+|||||+|||+|||||..+| ++|||||||++||+.+.+.+.+.|+++. +|+|+|+|+|+++.++.||+|++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 46677899999999999999999986 8999999999999999999999998885 48899999999999999999999
Q ss_pred E------eCCEEEEecCHHHHHhc
Q 003981 749 C------SDGRIAELGTHFELLAR 766 (782)
Q Consensus 749 L------d~G~Ive~Gth~eLl~~ 766 (782)
| ++|+|++.|+.+++...
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhcC
Confidence 9 99999999999998643
No 414
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=3.5e-16 Score=199.11 Aligned_cols=119 Identities=24% Similarity=0.322 Sum_probs=105.7
Q ss_pred CCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH------HHHHHHHhccCCC
Q 003981 625 LFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ------RIAIARALLKNAP 698 (782)
Q Consensus 625 LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ------RIaIARALlr~p~ 698 (782)
.|+||++|||.+ +| +++++ +.|++.+++++|+..+|.| ||.++.+| .||||||| |++||||++.+|+
T Consensus 1153 ~~~~~~~~~i~~-~~--~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~ 1225 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS--DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCG 1225 (1311)
T ss_pred HcCccHHHHhhc-CC--CCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCC
Confidence 499999999999 66 36666 7999999999999999999 99999887 89999999 9999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc------CCcEEEEEecChhHHHh------cCeEEEEe
Q 003981 699 ILILDEATSALDAVSERLVQDALNHLM------KGRTTLVIAHRLSTVQN------AHQIALCS 750 (782)
Q Consensus 699 ILILDEaTSALD~~tE~~I~~~L~~l~------~~kTvIvIaHRLsti~~------aD~IiVLd 750 (782)
||+|||||++||+.+...+.+.|.++. .|.|+|+|||.+..+.. ||+.+-+.
T Consensus 1226 il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1226 IIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred EEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 999999999999999999999887763 36799999999998763 56766553
No 415
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.64 E-value=2.3e-16 Score=160.29 Aligned_cols=138 Identities=15% Similarity=0.224 Sum_probs=95.2
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCC-cccHH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLF-SVSVG 631 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF-~gTIr 631 (782)
++|++|++|+. |+.++|+||+|||||||++.|.+..- +..+|.++... .++.|...+| +-|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 46788887765 79999999999999999999987442 22366655331 3566755555 57999
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 003981 632 ENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDA 711 (782)
Q Consensus 632 eNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~ 711 (782)
||+.++.. ...+++.++ .+.++.+. +++|+++||||||+++|+
T Consensus 78 d~l~~~~s---~~~~e~~~~------~~iL~~~~----------------------------~~~p~llllDEp~~glD~ 120 (199)
T cd03283 78 DDLRDGIS---YFYAELRRL------KEIVEKAK----------------------------KGEPVLFLLDEIFKGTNS 120 (199)
T ss_pred hccccccC---hHHHHHHHH------HHHHHhcc----------------------------CCCCeEEEEecccCCCCH
Confidence 99998732 222333222 22222221 079999999999999999
Q ss_pred HHHHHHHH-HHHHhc-CCcEEEEEecChhHHHhc
Q 003981 712 VSERLVQD-ALNHLM-KGRTTLVIAHRLSTVQNA 743 (782)
Q Consensus 712 ~tE~~I~~-~L~~l~-~~kTvIvIaHRLsti~~a 743 (782)
.+...+.. .++.+. ++.|+|++||.+..+...
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 87765543 455443 478999999998877554
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.62 E-value=8.5e-16 Score=156.74 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=102.1
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHc-CCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcC
Q 003981 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLAR-FYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYG 637 (782)
Q Consensus 559 Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~g-ly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G 637 (782)
.++++.+|++++|+||+||||||+++.|.+ .+.+..|...- ..+..+++..|.-..|. ..++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~---- 84 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDS---- 84 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Cccc----
Confidence 345556899999999999999999999994 32222221100 00112333222211111 0001
Q ss_pred CCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 003981 638 LPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLV 717 (782)
Q Consensus 638 ~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I 717 (782)
+-++-..++++++| ++.+-++..+|+++||||||+++|+.....+
T Consensus 85 ----------------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 85 ----------------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred ----------------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 11222445666665 6666788899999999999999999776655
Q ss_pred HHH-HHHhc-CCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHH
Q 003981 718 QDA-LNHLM-KGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 718 ~~~-L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eL 763 (782)
.+. ++.+. +++++|++||....++.+|++..+++|++.+.++.+++
T Consensus 130 ~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 130 AYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 443 44332 47899999999999999999999999999988865444
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.60 E-value=4.4e-15 Score=157.10 Aligned_cols=141 Identities=22% Similarity=0.300 Sum_probs=105.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC-hHhhhhceEEEcccCCCCc-ccHHHHHHcCCCCCCCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD-KSEWARVVSIVNQEPVLFS-VSVGENIAYGLPDENVS 644 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~-~~~lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s 644 (782)
+.++|+||+|||||||++.|+|++.|++|+|.++|+++..++ ..+++..++++||.. ++. .++.||- |
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~----~----- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGC----P----- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccc----h-----
Confidence 678999999999999999999999999999999999998775 678888899999965 332 2333331 0
Q ss_pred HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 003981 645 KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHL 724 (782)
Q Consensus 645 ~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l 724 (782)
..+ + -..++|+. +|+++|+|||++ +..+...++.+
T Consensus 182 k~~--------~-----------------------------~~~~i~~~--~P~villDE~~~------~e~~~~l~~~~ 216 (270)
T TIGR02858 182 KAE--------G-----------------------------MMMLIRSM--SPDVIVVDEIGR------EEDVEALLEAL 216 (270)
T ss_pred HHH--------H-----------------------------HHHHHHhC--CCCEEEEeCCCc------HHHHHHHHHHH
Confidence 010 0 05666664 999999999974 33344444555
Q ss_pred cCCcEEEEEecChhH--H------------HhcCeEEEEeCCEEEEecCHHHHH
Q 003981 725 MKGRTTLVIAHRLST--V------------QNAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 725 ~~~kTvIvIaHRLst--i------------~~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
..|+|+|+++|..+. + .-+||+++|++|+ ..|+.++..
T Consensus 217 ~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 217 HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 579999999997655 3 3479999999887 667765543
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.51 E-value=3.1e-13 Score=149.75 Aligned_cols=76 Identities=28% Similarity=0.427 Sum_probs=66.1
Q ss_pred CCCChhHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh---cC
Q 003981 677 GLLSGGQRQRIAIARALL---------KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN---AH 744 (782)
Q Consensus 677 ~~LSGGQrQRIaIARALl---------r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~---aD 744 (782)
..+|+||+|+++||++|. ++||||+||||+|.||+...+.+.+.|.++ ++++++.+|.+..+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999884 899999999999999999999998888653 4688889998776544 56
Q ss_pred eEEEEeCCEE
Q 003981 745 QIALCSDGRI 754 (782)
Q Consensus 745 ~IiVLd~G~I 754 (782)
+|+.|++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 419
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.50 E-value=1.2e-13 Score=142.79 Aligned_cols=171 Identities=23% Similarity=0.379 Sum_probs=102.6
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHH-HcCCC-CC-ccEEEECCeeCCCC------ChHhhhhceEEEcccCCCC-
Q 003981 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLL-ARFYE-PT-GGRITVGGEDLRTF------DKSEWARVVSIVNQEPVLF- 626 (782)
Q Consensus 557 ~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL-~gly~-p~-~G~I~idG~di~~i------~~~~lR~~Ia~V~Q~~~LF- 626 (782)
++..+.+.| ..++|+||+||||||++..| .-+.. +. +.+ +...+++ ........|....++.--.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r----~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFR----GSKLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-----SSGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHccccccc----ccccccccccccccccccccccccccccccccc
Confidence 345556654 59999999999999999999 44442 11 111 1111111 1112223344433332211
Q ss_pred ---cc--cHHHHH------HcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH----H
Q 003981 627 ---SV--SVGENI------AYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA----R 691 (782)
Q Consensus 627 ---~g--TIreNI------~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA----R 691 (782)
.. .|+..+ .+......++.+++.+.+....++.. .||||||-+++|| .
T Consensus 91 ~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~ 153 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLAL 153 (220)
T ss_dssp SSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-----------------cccccccccccccccccc
Confidence 10 111000 11111123455666655544444322 9999999999987 4
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEE
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALC 749 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVL 749 (782)
.-+++.|++||||+.++||....+.+.+.|++..+++-+|++||+..+...||+.+.+
T Consensus 154 ~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 154 QRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp HTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4467899999999999999999999999999998889999999999999999999875
No 420
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.50 E-value=2.6e-14 Score=168.12 Aligned_cols=106 Identities=27% Similarity=0.411 Sum_probs=92.2
Q ss_pred HHHHHHHHhcchhHHHhCCCCccccccCCC------CCCChhHHHHHHHHHHhc----------cCCCEEEEeCCC-CCC
Q 003981 647 DIIKAAKAANAHDFIISLPQGYDTLVGERG------GLLSGGQRQRIAIARALL----------KNAPILILDEAT-SAL 709 (782)
Q Consensus 647 ei~~A~~~a~l~dfI~~LP~GldT~VGE~G------~~LSGGQrQRIaIARALl----------r~p~ILILDEaT-SAL 709 (782)
.+.+.++..+. ++...+|+++++.+++.| .+||||||||++|||||+ .+|++||||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 44555555543 556678999999999999 689999999999999887 599999999998 789
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeC-CEE
Q 003981 710 DAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSD-GRI 754 (782)
Q Consensus 710 D~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~-G~I 754 (782)
|..+...+.+.|.++ +++|+|+|||+......||++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999998 78999999999999999999999986 554
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.50 E-value=5e-14 Score=145.06 Aligned_cols=155 Identities=19% Similarity=0.215 Sum_probs=103.7
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCC-cccHH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLF-SVSVG 631 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF-~gTIr 631 (782)
..+.+|+++++++ ++++|+||+||||||+++.+.+..-. |+ .|.. ++ ..+..++++.| +| +-+++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~---vp--~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSF---VP--ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCe---ec--cccceecceee---EeccCCch
Confidence 4588999999987 99999999999999999999764321 11 1111 11 11245777765 23 33556
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh--ccCCCEEEEeCC---C
Q 003981 632 ENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL--LKNAPILILDEA---T 706 (782)
Q Consensus 632 eNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL--lr~p~ILILDEa---T 706 (782)
||+..|. |-=...+..|++++ ..+|+++||||| |
T Consensus 84 ~~ls~g~-----------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 84 DDLAGGR-----------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhhccCc-----------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 6665541 00011122344443 469999999999 9
Q ss_pred CCCCHHH-HHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHH
Q 003981 707 SALDAVS-ERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 707 SALD~~t-E~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eL 763 (782)
+++|... ...+.+.+.+. .++|+|++||.......+|++.-+++|++...++-+++
T Consensus 123 ~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 123 STYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred ChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 9999854 24455555442 37899999999877777888877888998776655555
No 422
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.48 E-value=1.1e-13 Score=141.14 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=96.2
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE-EEcccCCCCcccH
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS-IVNQEPVLFSVSV 630 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia-~V~Q~~~LF~gTI 630 (782)
+..+.+|++|++++|+.++|+||+||||||+++.+.+.. +..++| +||-+. ..-++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccC
Confidence 457899999999999999999999999999999998873 222232 222111 11133
Q ss_pred HHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 003981 631 GENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALD 710 (782)
Q Consensus 631 reNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD 710 (782)
.|||.. .+.. +..+.++-+++|+|+||+. .+-++..+|+++|||||++++|
T Consensus 72 ~d~I~~--------------------------~~~~--~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 72 FNRLLS--------------------------RLSN--DDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hhheeE--------------------------ecCC--ccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCC
Confidence 444421 1111 1123355678999999764 4455778999999999999999
Q ss_pred HHH-HHHHHHHHHHhc-CCcEEEEEecChhHHHhcC
Q 003981 711 AVS-ERLVQDALNHLM-KGRTTLVIAHRLSTVQNAH 744 (782)
Q Consensus 711 ~~t-E~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD 744 (782)
+.. .....+.++.+. .++++|++||....+..++
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 954 333333344433 4889999999998876643
No 423
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.2e-13 Score=147.76 Aligned_cols=199 Identities=25% Similarity=0.355 Sum_probs=139.4
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHc--CCCCCccEEEECCeeCCCCChHhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLAR--FYEPTGGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~g--ly~p~~G~I~idG~di~~i~~~~lR~ 614 (782)
+|.++|.+.+-. ++..+.|-||.|-.|...++|||+|-|||||++-|.- |--|..=.
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnID------------------ 322 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNID------------------ 322 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCc------------------
Confidence 588898887764 4568899999999999999999999999999998853 22232222
Q ss_pred ceEEEcccCCCCcccHHHHHHcCC------------------CCCCCCHHHHHH---HHHHhc-------chhHHHhCCC
Q 003981 615 VVSIVNQEPVLFSVSVGENIAYGL------------------PDENVSKDDIIK---AAKAAN-------AHDFIISLPQ 666 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~gTIreNI~~G~------------------p~~~~s~eei~~---A~~~a~-------l~dfI~~LP~ 666 (782)
+-|+.|+..-=+.|--+-+.-.. ..+.--.|++.+ -++..+ +...+..|
T Consensus 323 -vLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGL-- 399 (807)
T KOG0066|consen 323 -VLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGL-- 399 (807)
T ss_pred -eEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhc--
Confidence 34444544433333333222110 000000122221 122222 22223332
Q ss_pred CccccccCCCC-CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cC
Q 003981 667 GYDTLVGERGG-LLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AH 744 (782)
Q Consensus 667 GldT~VGE~G~-~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD 744 (782)
|++-..-++.. .+|||-|-|++|||||+-.|-+|.|||||..||-..---+.+-|+.| .+|.++|+|.-+.+.+ |.
T Consensus 400 GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCt 477 (807)
T KOG0066|consen 400 GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCT 477 (807)
T ss_pred CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHH
Confidence 78888878775 59999999999999999999999999999999987777777778876 4899999999999977 99
Q ss_pred eEEEEeCCEEE-EecCHH
Q 003981 745 QIALCSDGRIA-ELGTHF 761 (782)
Q Consensus 745 ~IiVLd~G~Iv-e~Gth~ 761 (782)
.|+.||+-++- .+|+|.
T Consensus 478 dIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 478 DIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred HHhhhhhhhhhhhcchHH
Confidence 99999998874 356663
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.46 E-value=3.4e-13 Score=144.75 Aligned_cols=196 Identities=22% Similarity=0.339 Sum_probs=142.2
Q ss_pred EEEcCCCCCccceeeeeEEEeCCc-----EEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEE
Q 003981 544 YFSYPLRPDVVILNGLNLTLKSGS-----VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (782)
Q Consensus 544 sF~Y~~~~~~~vL~~Isl~I~~Ge-----~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 618 (782)
.++||+ .+..+.++.|.|+.|+ .+...|++|-||||++++++|..+|++|. ++..++ |+|
T Consensus 342 ~y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~ln-------VSy 406 (592)
T KOG0063|consen 342 RYSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVLN-------VSY 406 (592)
T ss_pred eeccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------cccccc-------eec
Confidence 367874 4567889999999996 57889999999999999999999998762 344444 788
Q ss_pred EcccCC-CCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 003981 619 VNQEPV-LFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA 697 (782)
Q Consensus 619 V~Q~~~-LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p 697 (782)
=||... =|.||+|.=+. +.++.|.-.-+....++ -|-..+..++..-.+||||+.||+|||=+|=+.+
T Consensus 407 kpqkispK~~~tvR~ll~----------~kIr~ay~~pqF~~dvm-kpL~ie~i~dqevq~lSggelQRval~KOGGKpA 475 (592)
T KOG0063|consen 407 KPQKISPKREGTVRQLLH----------TKIRDAYMHPQFVNDVM-KPLQIENIIDQEVQGLSGGELQRVALALCLGKPA 475 (592)
T ss_pred cccccCccccchHHHHHH----------HHhHhhhcCHHHHHhhh-hhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCC
Confidence 888754 58899987553 22333322222222221 1334444556667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhHHH-hcCeEEEEeCCE--EEEecCHHHHHh
Q 003981 698 PILILDEATSALDAVSERLVQDALNHL--MKGRTTLVIAHRLSTVQ-NAHQIALCSDGR--IAELGTHFELLA 765 (782)
Q Consensus 698 ~ILILDEaTSALD~~tE~~I~~~L~~l--~~~kTvIvIaHRLsti~-~aD~IiVLd~G~--Ive~Gth~eLl~ 765 (782)
++++.|||.+-||++.+...-..+++. ...+|-.+|-|.+-.-. -|||++|.+.-. ..-.-.++.|++
T Consensus 476 dvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 476 DVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred ceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 999999999999998877766666664 35889999999976543 389999987532 222334555544
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.40 E-value=4.8e-12 Score=142.32 Aligned_cols=178 Identities=20% Similarity=0.254 Sum_probs=126.6
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECC---eeCCC-----CChHhhhhceEEEcccC
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG---EDLRT-----FDKSEWARVVSIVNQEP 623 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG---~di~~-----i~~~~lR~~Ia~V~Q~~ 623 (782)
+..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.| .++.+ ++...+++.|.+|.+-.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 34689999 99999999999999999999999999999999999999954 44453 45566788888886421
Q ss_pred CCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCC-CCCChhHHHHHHHHHHhccCCCEEEE
Q 003981 624 VLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERG-GLLSGGQRQRIAIARALLKNAPILIL 702 (782)
Q Consensus 624 ~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G-~~LSGGQrQRIaIARALlr~p~ILIL 702 (782)
+..-+++..+.-...+.++... +|.|-.+--.- .++---||. |++ ++..||
T Consensus 224 ------------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A~A~rE-isl---~~ge~P---- 275 (438)
T PRK07721 224 ------------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVAMAQRE-IGL---AVGEPP---- 275 (438)
T ss_pred ------------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHHHHHHH-HHH---hcCCCC----
Confidence 1223444444444445566553 47665553211 111111100 111 123444
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc---CCc-----EEEEEecChhHHHhcCeEEEEeCCEEEEecCHH
Q 003981 703 DEATSALDAVSERLVQDALNHLM---KGR-----TTLVIAHRLSTVQNAHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 703 DEaTSALD~~tE~~I~~~L~~l~---~~k-----TvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~ 761 (782)
.|+++|+..-..+.+.++++. +|. |+++.+|+++. .-||++.+|.+|+|+..|+-.
T Consensus 276 --~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 276 --TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred --ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHH
Confidence 689999999998888888875 465 99999999996 779999999999999988754
No 426
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.30 E-value=6e-12 Score=129.53 Aligned_cols=44 Identities=11% Similarity=0.152 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhc
Q 003981 682 GQRQRIAIARALLKNAPILILDEAT-----SALDAVSERLVQDALNHLM 725 (782)
Q Consensus 682 GQrQRIaIARALlr~p~ILILDEaT-----SALD~~tE~~I~~~L~~l~ 725 (782)
-|+|++.|||+++.+|++++||||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998863
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.29 E-value=8e-12 Score=146.49 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=72.4
Q ss_pred CCCChhHHHHHHHHHHhccC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCC
Q 003981 677 GLLSGGQRQRIAIARALLKN----APILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDG 752 (782)
Q Consensus 677 ~~LSGGQrQRIaIARALlr~----p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G 752 (782)
..|||||+||++||||++.. |++|||||||++||..+...+.+.|+++.+++|+|+|||.+..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 46899999999999999875 69999999999999999999999999988899999999999999999999999987
Q ss_pred E
Q 003981 753 R 753 (782)
Q Consensus 753 ~ 753 (782)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 428
>PRK10869 recombination and repair protein; Provisional
Probab=99.27 E-value=1.1e-11 Score=144.19 Aligned_cols=76 Identities=25% Similarity=0.387 Sum_probs=71.7
Q ss_pred CCChhHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCE
Q 003981 678 LLSGGQRQRIAIARALLK----NAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGR 753 (782)
Q Consensus 678 ~LSGGQrQRIaIARALlr----~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~ 753 (782)
.+||||+|||+|||+++. +|+++|||||+++||..+...+.+.|+++.+++|+|+|||.+.....||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 689999999999999996 6899999999999999999999999999988899999999999999999999998753
No 429
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.25 E-value=4.2e-11 Score=123.12 Aligned_cols=138 Identities=16% Similarity=0.228 Sum_probs=92.5
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHc--CCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHH
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLAR--FYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~g--ly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIr 631 (782)
.|-+|+++.=..+.+++|+||+|+||||+++.+.. .. +..|....... ..++|..|.-.-+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~-----------~~~~~~d~i~~~l----- 79 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADS-----------ATIGLVDKIFTRM----- 79 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCC-----------cEEeeeeeeeeee-----
Confidence 45566665432237899999999999999999983 33 56666554321 2377777753322
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 003981 632 ENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDA 711 (782)
Q Consensus 632 eNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~ 711 (782)
+. + +.+... ...| --+-||+++|+++..+|+++|||||++++|+
T Consensus 80 -----~~-~-----~si~~~-----~S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 80 -----SS-R-----ESVSSG-----QSAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred -----CC-c-----cChhhc-----cchH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 10 0 111100 0111 2345999999999999999999999999998
Q ss_pred H-HHHHHHHHHHHhcC----CcEEEEEecChhHHHhcC
Q 003981 712 V-SERLVQDALNHLMK----GRTTLVIAHRLSTVQNAH 744 (782)
Q Consensus 712 ~-tE~~I~~~L~~l~~----~kTvIvIaHRLsti~~aD 744 (782)
. ......+.++++.+ +.++|++||.++.++...
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 5 45555566666543 248999999999887653
No 430
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.19 E-value=2.3e-11 Score=122.37 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=52.5
Q ss_pred cCCCCCCChhHHHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCcEEEEEecChhHHHhcCe
Q 003981 673 GERGGLLSGGQRQRIAIARALLK--NAPILILDEATSALDAVSERLV-QDALNHLM--KGRTTLVIAHRLSTVQNAHQ 745 (782)
Q Consensus 673 GE~G~~LSGGQrQRIaIARALlr--~p~ILILDEaTSALD~~tE~~I-~~~L~~l~--~~kTvIvIaHRLsti~~aD~ 745 (782)
.++-..||+|++| +++++.. +|+++|+|||++++|+.....+ ...++.+. .++++|++||.....+.+|+
T Consensus 56 ~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 56 AQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred hccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 3455678888887 4555555 9999999999999999766555 44455544 37899999999987777774
No 431
>PRK13695 putative NTPase; Provisional
Probab=99.19 E-value=2.8e-11 Score=120.49 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=66.0
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeC
Q 003981 674 ERGGLLSGGQRQRIAIARALLKNAPILILDE--ATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSD 751 (782)
Q Consensus 674 E~G~~LSGGQrQRIaIARALlr~p~ILILDE--aTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~ 751 (782)
.....+||+++-++.+++..+++|+++|+|| ++..+|....+.+.++++ .++++|+++|.-..-..+|+|.++.+
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCC
Confidence 3345699999999999999999999999999 444556555555555552 48899999999666677999999999
Q ss_pred CEEEEe
Q 003981 752 GRIAEL 757 (782)
Q Consensus 752 G~Ive~ 757 (782)
|+|.+.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 999886
No 432
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.15 E-value=5.7e-12 Score=149.44 Aligned_cols=123 Identities=15% Similarity=0.069 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhHHHHHHHhCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003981 352 ASIADCVTETFSAIRTVRSFGGEKRQMLMF-----GRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVK 426 (782)
Q Consensus 352 ~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~ 426 (782)
....+.+.|++.++.+||..+.|......| .+...+..+...+..........+...+..+...+++|+|++++.
T Consensus 40 ~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~ 119 (644)
T PRK10733 40 EVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFF 119 (644)
T ss_pred HHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567889999999999999988777677 555555656555544444434444445555566778889999999
Q ss_pred cCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003981 427 AGELSVG---IVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILST 475 (782)
Q Consensus 427 ~g~lt~G---~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~ 475 (782)
.|.++.| .+++|..+...+..| ..+...+.++.....+.+|+.++.+.
T Consensus 120 ~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~ 170 (644)
T PRK10733 120 MRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEY 170 (644)
T ss_pred HhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHH
Confidence 9999998 788888777777777 66777788888888888888887653
No 433
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.14 E-value=2.3e-10 Score=137.53 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=97.4
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCC-cEEEEECCCCCcHHHHHHHHHcC-CCCCccEEEECCeeCCCCChHhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSG-SVTALVGSSGAGKSTIVQLLARF-YEPTGGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~G-e~vaIVG~SGSGKSTLl~LL~gl-y~p~~G~I~idG~di~~i~~~~lR~ 614 (782)
.+.++++..-+-.. ..+ -.+|+++.++ +.++|+||+|+||||+++.+.+. +.+..|
T Consensus 295 ~i~l~~~rhPll~~-~~~--vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------------------- 352 (771)
T TIGR01069 295 KIILENARHPLLKE-PKV--VPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------------------- 352 (771)
T ss_pred CEEEccccCceecC-Cce--EeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC-------------------
Confidence 46777665422110 001 1368888877 89999999999999999999987 333333
Q ss_pred ceEEEcccCC-CCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 615 VVSIVNQEPV-LFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 615 ~Ia~V~Q~~~-LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
.+||.... .+ .+.+++... ..+++ .+.++-++||+|++|+..|++++
T Consensus 353 --~~Vpa~~~~~~--~~~d~i~~~-----i~~~~-----------------------si~~~LStfS~~m~~~~~il~~~ 400 (771)
T TIGR01069 353 --IPIPANEHSEI--PYFEEIFAD-----IGDEQ-----------------------SIEQNLSTFSGHMKNISAILSKT 400 (771)
T ss_pred --CCccCCccccc--cchhheeee-----cChHh-----------------------HHhhhhhHHHHHHHHHHHHHHhc
Confidence 14444331 11 122333211 11110 11234567999999999999987
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc-CCcEEEEEecChhH
Q 003981 694 LKNAPILILDEATSALDAVSERLVQ-DALNHLM-KGRTTLVIAHRLST 739 (782)
Q Consensus 694 lr~p~ILILDEaTSALD~~tE~~I~-~~L~~l~-~~kTvIvIaHRLst 739 (782)
.+|+++|||||++++|+..-..+. ..++.+. +++++|++||....
T Consensus 401 -~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 401 -TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred -CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 789999999999999997776664 4444443 58899999999765
No 434
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.14 E-value=9.5e-11 Score=127.34 Aligned_cols=143 Identities=22% Similarity=0.273 Sum_probs=102.5
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCC
Q 003981 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638 (782)
Q Consensus 559 Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~ 638 (782)
+++.+++|+.++|+|++||||||++++|++++++..|.+.++ |..++.... +..+.++.|.. + + +
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~----~---~----~- 201 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKG----G---Q----G- 201 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCC----C---C----C-
Confidence 567889999999999999999999999999999999988885 444544432 23333332210 0 0 0
Q ss_pred CCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q 003981 639 PDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQ 718 (782)
Q Consensus 639 p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~ 718 (782)
...++.++ .++++|-.+|+++++||+.+ .+ +.
T Consensus 202 -~~~~~~~~----------------------------------------~l~~~Lr~~pd~ii~gE~r~---~e----~~ 233 (308)
T TIGR02788 202 -LAKVTPKD----------------------------------------LLQSCLRMRPDRIILGELRG---DE----AF 233 (308)
T ss_pred -cCccCHHH----------------------------------------HHHHHhcCCCCeEEEeccCC---HH----HH
Confidence 01122222 34556778999999999997 22 23
Q ss_pred HHHHHhcCCc-EEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHH
Q 003981 719 DALNHLMKGR-TTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 719 ~~L~~l~~~k-TvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
+.++....|. +++...|-.+.....||+..|..|+++..|..+|.+
T Consensus 234 ~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 234 DFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 4455444454 568999999988889999999999999888877776
No 435
>PRK14079 recF recombination protein F; Provisional
Probab=99.12 E-value=7.4e-10 Score=122.33 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=61.1
Q ss_pred CCCChhHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEE
Q 003981 677 GLLSGGQRQRIAIARALL---------KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIA 747 (782)
Q Consensus 677 ~~LSGGQrQRIaIARALl---------r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~Ii 747 (782)
.-+|+||+++++||+.|. .+|||++||||+|.||......+.+.|.+. ..+.|.-|+ .-.-+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~--~q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL--PQAIVAGTE---APPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC--CcEEEEcCC---CCCCCceEE
Confidence 357999999999999998 899999999999999999998888888653 244444333 334589999
Q ss_pred EEeCCEEEE
Q 003981 748 LCSDGRIAE 756 (782)
Q Consensus 748 VLd~G~Ive 756 (782)
++++|++.-
T Consensus 337 ~~~~~~~~~ 345 (349)
T PRK14079 337 RIEAGVFTP 345 (349)
T ss_pred EEeccEecC
Confidence 999998764
No 436
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.11 E-value=2.6e-10 Score=117.68 Aligned_cols=138 Identities=17% Similarity=0.191 Sum_probs=85.2
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHc-CCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLAR-FYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~g-ly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIr 631 (782)
..+.+|+++++.+|++++|+||+|+||||+++.+++ .+.++.|.....-. -.++|..|= +..-...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~-----------~~~~~~~~i--~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-----------ATLSIFDSV--LTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc-----------eEEeccceE--EEEecCc
Confidence 478999999999999999999999999999999999 77888888654432 113443331 1111112
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCC-
Q 003981 632 ENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALD- 710 (782)
Q Consensus 632 eNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD- 710 (782)
|++.-|.. .=..|+.+.. -.=.-..+++++||||+.++.|
T Consensus 85 d~~~~~~S---tF~~e~~~~~------------------------------------~il~~~~~~sLvllDE~~~gT~~ 125 (222)
T cd03287 85 DSIQHGMS---TFMVELSETS------------------------------------HILSNCTSRSLVILDELGRGTST 125 (222)
T ss_pred cccccccc---hHHHHHHHHH------------------------------------HHHHhCCCCeEEEEccCCCCCCh
Confidence 22221100 0012222221 1111235799999999855555
Q ss_pred --HHH-HHHHHHHHHHhcCCcEEEEEecChhHHHhc
Q 003981 711 --AVS-ERLVQDALNHLMKGRTTLVIAHRLSTVQNA 743 (782)
Q Consensus 711 --~~t-E~~I~~~L~~l~~~kTvIvIaHRLsti~~a 743 (782)
..+ ...+.+.+.+. +++|+|++||.+......
T Consensus 126 ~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 126 HDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred hhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 433 23344555443 478999999998865443
No 437
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.11 E-value=7.7e-07 Score=99.06 Aligned_cols=270 Identities=8% Similarity=0.021 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHHHhc-------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 003981 189 TCTLSMPIFSGRFFEVLIG-------ARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQK 261 (782)
Q Consensus 189 ~~~l~~P~~~~~~id~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp 261 (782)
.+.+......+.+.|.+.. .+...++..+..++.+.++...+..+..+...+...+....|.+.+.++-++..
T Consensus 106 ~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r 185 (409)
T PRK11098 106 QVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR 185 (409)
T ss_pred HhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444555667776654 133445555544444444444455555566666667777777778887777554
Q ss_pred hhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHH-------------HHHHHHHHHH
Q 003981 262 AEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQL-------------APILGVLVLT 328 (782)
Q Consensus 262 ~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~L-------------ali~l~~~~~ 328 (782)
..+ + --.|++.|+....+....... ..+.++++++..+.+++.++..+ ..++++..++
T Consensus 186 --~ie-n----PDQRIqEDi~~F~~~tl~L~~--~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~ 256 (409)
T PRK11098 186 --HIE-G----AAQRVQEDTMRFASTLENLGV--SFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLF 256 (409)
T ss_pred --CCC-C----ccHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHH
Confidence 112 2 356899998887776654433 35666777777777787777653 2222222333
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 329 VSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRI 408 (782)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (782)
..++..+..++..+..-+.++..++....+.-.=++.+ +.+.++.++..++..+...+.-........+...
T Consensus 257 GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~f~~~ 328 (409)
T PRK11098 257 GTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELFSNVRKNYFRLYFHYMYFNIARIL 328 (409)
T ss_pred HHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666655443322222222 2333344443333333333332222222333333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003981 409 AIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILST 475 (782)
Q Consensus 409 ~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~ 475 (782)
-..+..+.-+.+.+-....|++|.|.+......+.++..+++.+.+.+.++.+-.+..+|+.++.+.
T Consensus 329 y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 329 YLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334445677788999999999999999999999999999999999999999999999753
No 438
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.09 E-value=5e-10 Score=129.39 Aligned_cols=108 Identities=32% Similarity=0.475 Sum_probs=89.7
Q ss_pred hHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEec
Q 003981 659 DFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA--PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAH 735 (782)
Q Consensus 659 dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p--~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaH 735 (782)
+|+...--||-|. .-...+|||||.|||-||+-+-.+= =++|||||+.+|-..--.++.+.|++++ .|.|+|||-|
T Consensus 463 ~fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEH 541 (935)
T COG0178 463 GFLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541 (935)
T ss_pred HHHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEec
Confidence 4555555566665 3445689999999999999998763 4899999999999955555666777765 5999999999
Q ss_pred ChhHHHhcCeEEEE------eCCEEEEecCHHHHHhcc
Q 003981 736 RLSTVQNAHQIALC------SDGRIAELGTHFELLARK 767 (782)
Q Consensus 736 RLsti~~aD~IiVL------d~G~Ive~Gth~eLl~~~ 767 (782)
...||+.||+|+=| ..|+||.+||++|+++..
T Consensus 542 Dedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 542 DEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred CHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 99999999999988 579999999999999876
No 439
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.09 E-value=1.3e-09 Score=113.49 Aligned_cols=157 Identities=15% Similarity=0.216 Sum_probs=91.3
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHH-HHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTI-VQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTL-l~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
+.+++++..++. -+++|+.+.|+|++||||||+ .+++.++.++.+..+++... .++++
T Consensus 8 ~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e----~~~~~----- 66 (230)
T PRK08533 8 LSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ----LTTTE----- 66 (230)
T ss_pred EEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----CCHHH-----
Confidence 566677666642 279999999999999999999 68999887754444443321 11111
Q ss_pred EEEcccCCCCcccHHHHH-HcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 617 SIVNQEPVLFSVSVGENI-AYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 617 a~V~Q~~~LF~gTIreNI-~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
+.+|. .+|. +.++. ...-.+ .++ + + ...+|+++.++-.++|.+-.
T Consensus 67 -------------~~~~~~~~g~-----~~~~~---~~~~~l-~~~-------~--~---~~~~~~~~~~~~~l~~il~~ 112 (230)
T PRK08533 67 -------------FIKQMMSLGY-----DINKK---LISGKL-LYI-------P--V---YPLLSGNSEKRKFLKKLMNT 112 (230)
T ss_pred -------------HHHHHHHhCC-----chHHH---hhcCcE-EEE-------E--e---cccccChHHHHHHHHHHHHH
Confidence 11221 2231 01111 000000 000 0 0 02356776666555554433
Q ss_pred ----CCCEEEEeCCCCCC----CHHHHHHHHHHHHHhcC-CcEEEEEecChhHHH--------h-cCeEEEEe
Q 003981 696 ----NAPILILDEATSAL----DAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQ--------N-AHQIALCS 750 (782)
Q Consensus 696 ----~p~ILILDEaTSAL----D~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~--------~-aD~IiVLd 750 (782)
+|+++++||||+.+ |+...+.+.+.++.+.+ ++|+++ +|....+. . ||-|+.|+
T Consensus 113 ~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 113 RRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 69999999999999 66666778888877644 666554 55544321 1 57787776
No 440
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.07 E-value=1e-09 Score=133.65 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=60.9
Q ss_pred hccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCcEEEEEecChhHH----------HhcCeEEEEeCCEEEEecCH
Q 003981 693 LLKNAPILILDEATSAL-DAVSERLVQDALNHLM-KGRTTLVIAHRLSTV----------QNAHQIALCSDGRIAELGTH 760 (782)
Q Consensus 693 Llr~p~ILILDEaTSAL-D~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti----------~~aD~IiVLd~G~Ive~Gth 760 (782)
+..+|+++++|||+++| |+...+.+.+.+++.+ +|.++|++||.++.+ ..||.+++|.+|++.+.|+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 35799999999999999 6899999999998765 488999999999887 47999999999999877643
Q ss_pred HHHHh
Q 003981 761 FELLA 765 (782)
Q Consensus 761 ~eLl~ 765 (782)
++.+
T Consensus 729 -~~~~ 732 (818)
T PRK13830 729 -EFYE 732 (818)
T ss_pred -HHHH
Confidence 4433
No 441
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.06 E-value=3.7e-10 Score=121.74 Aligned_cols=171 Identities=27% Similarity=0.385 Sum_probs=119.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEE-----------ECCeeCCCC----ChHhhhhc--eEEEcccCCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRIT-----------VGGEDLRTF----DKSEWARV--VSIVNQEPVLF 626 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~-----------idG~di~~i----~~~~lR~~--Ia~V~Q~~~LF 626 (782)
+||+..++||..|-||||-++.|+|-.+|.-|.-. +.|-.+..+ ..+.++.- .-||.|=|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 68999999999999999999999999999877532 111111111 11111111 23555555566
Q ss_pred cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC
Q 003981 627 SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEAT 706 (782)
Q Consensus 627 ~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaT 706 (782)
.|++++++.-- ++.-+ ..++|..-++... +|-. -..||||+-||.|||-+.+++++++++|||.
T Consensus 178 k~~v~~~l~~~--~~r~~---~~~~~~~~~L~~~-------~~re----~~~lsggelqrfaia~~~vq~advyMFDEpS 241 (592)
T KOG0063|consen 178 KGTVGSLLDRK--DERDN---KEEVCDQLDLNNL-------LDRE----VEQLSGGELQRFAIAMVCVQKADVYMFDEPS 241 (592)
T ss_pred HHHHHHHHHHH--hhccc---HHHHHHHHHHhhH-------HHhh----hhhcccchhhhhhhhhhhhhhcceeEecCCc
Confidence 67777777532 11112 3334433333322 1222 3469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEe
Q 003981 707 SALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCS 750 (782)
Q Consensus 707 SALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd 750 (782)
|-||......-...|+.+. .++-+|||-|.||.+.. .|-|-++-
T Consensus 242 sYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 242 SYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred ccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 9999988888888888775 58899999999998865 67777664
No 442
>PRK12369 putative transporter; Reviewed
Probab=99.05 E-value=2.2e-06 Score=93.43 Aligned_cols=272 Identities=10% Similarity=0.083 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 003981 187 CTTCTLSMPIFSGRFFEVLIGA-------RPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLI 259 (782)
Q Consensus 187 ~~~~~l~~P~~~~~~id~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~ 259 (782)
.+.+.+......+.+.|.+... +...++..+..++++.++..++.....+.......+....+.+.+.++-+.
T Consensus 29 ~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~ 108 (326)
T PRK12369 29 QVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRN 108 (326)
T ss_pred HHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555555667777777642 233455555444444444444555566666677777777788888888876
Q ss_pred CChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH------------HHHHHHH
Q 003981 260 QKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP------------ILGVLVL 327 (782)
Q Consensus 260 lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lal------------i~l~~~~ 327 (782)
..- .- +++ =.|++.|++...+....... ..+.++++++....+++.++..+.+ .+++..+
T Consensus 109 ~~~-~i-DNP----DQRI~EDi~~f~~~tl~l~~--~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai 180 (326)
T PRK12369 109 KRD-NI-EGS----SQRIQEDTYRFAKIMESLGL--SFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISL 180 (326)
T ss_pred CCC-CC-CCc----cHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHH
Confidence 431 11 222 26999999887776655443 3566677777777777776644432 1222223
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 328 TVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGE-KRQMLMFGRQVLAYQQSGIKLGTFKSLNESLT 406 (782)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (782)
+..++..++.++..+..-+.++..++....+.-.=++-+. + .| +...++|.+..+.+.+.-.+..++ ..+.
T Consensus 181 ~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~-~E~~~l~~~f~~v~~n~~~~~~~~~~l----~~~~ 252 (326)
T PRK12369 181 GGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y-AKPETLIELFTGLRFNYFRLFLHYGYF----NIWL 252 (326)
T ss_pred HHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h-hhHHHHHHHHHHHHHHHHHHHHHHHhH----HHHH
Confidence 3333445566666666666555555554322111000000 1 11 223334444333333333222222 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003981 407 RIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILS 474 (782)
Q Consensus 407 ~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~ 474 (782)
.....++.++-+.+.+.....|+++.|.+......+..+..+++.+.+.+.++.+-.+.++|+.++.+
T Consensus 253 ~~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 253 ISFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEK 320 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344566777899999999999999999999999999999999999999999999864
No 443
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.04 E-value=1.3e-10 Score=129.39 Aligned_cols=67 Identities=25% Similarity=0.217 Sum_probs=56.8
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCcc-EEEECCeeCCCCChHhhhhceEEEcccC
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG-RITVGGEDLRTFDKSEWARVVSIVNQEP 623 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G-~I~idG~di~~i~~~~lR~~Ia~V~Q~~ 623 (782)
.+|++||++|++||.++|+||||||||||++ .++..|++| +|.+||+++...+...++.-= +|.|+-
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 5899999999999999999999999999999 778888888 799999999887755543322 777753
No 444
>PRK01156 chromosome segregation protein; Provisional
Probab=99.02 E-value=7.2e-10 Score=137.48 Aligned_cols=76 Identities=25% Similarity=0.326 Sum_probs=66.9
Q ss_pred CCCCCChhHHHHHHH------HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---C-cEEEEEecChhHHHhcC
Q 003981 675 RGGLLSGGQRQRIAI------ARALLKNAPILILDEATSALDAVSERLVQDALNHLMK---G-RTTLVIAHRLSTVQNAH 744 (782)
Q Consensus 675 ~G~~LSGGQrQRIaI------ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~---~-kTvIvIaHRLsti~~aD 744 (782)
....||||||||++| ||+++.+|++++|||||++||..+...+.+.|..... + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 5999999999999999999999999998888864322 2 48999999999999999
Q ss_pred eEEEEe
Q 003981 745 QIALCS 750 (782)
Q Consensus 745 ~IiVLd 750 (782)
+|++++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 445
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.01 E-value=1.8e-06 Score=92.76 Aligned_cols=223 Identities=13% Similarity=0.155 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 003981 184 LIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAE 263 (782)
Q Consensus 184 ~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~ 263 (782)
.++.+.++.......+.+++.+...+...++..+...+++.+...++.....+....+..++...|...+.++.++-. .
T Consensus 36 ~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~ 114 (281)
T PF06472_consen 36 LLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-T 114 (281)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-h
Confidence 333445566666777888888877666667766666666666666666667777777788888888888888888777 6
Q ss_pred hhhccC----hhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHH
Q 003981 264 FFDRYK----VGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP-ILGVLVLTVSVLVAVYKR 338 (782)
Q Consensus 264 ~f~~~~----~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lal-i~l~~~~~~~~~~~~~~~ 338 (782)
||.-.. ....=.|++.|++.+.+.....+. ..+.++++++.....++..+..+.+ ++++..++..++..++.+
T Consensus 115 yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~--~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~ 192 (281)
T PF06472_consen 115 YYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFL--GLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGP 192 (281)
T ss_pred hHhhhccccccccHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 666332 234557999999998887766554 3566666777777777777766666 333444455556677888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 339 STVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIA 409 (782)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (782)
...+...+.++..++.........++-+.|-.++.|+.+.++.++..++..+...+..+.+.....+..+.
T Consensus 193 ~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 263 (281)
T PF06472_consen 193 PLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNFY 263 (281)
T ss_pred hhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888889999999999999999999999999988888777777666665555554444
No 446
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.99 E-value=3.1e-09 Score=106.50 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=62.0
Q ss_pred CccccccCCCCCCChhHHH-----HHHHHHH-hccCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhc-CCcEEEEEecC
Q 003981 667 GYDTLVGERGGLLSGGQRQ-----RIAIARA-LLKNAPILILDEATSALD---AVSERLVQDALNHLM-KGRTTLVIAHR 736 (782)
Q Consensus 667 GldT~VGE~G~~LSGGQrQ-----RIaIARA-Llr~p~ILILDEaTSALD---~~tE~~I~~~L~~l~-~~kTvIvIaHR 736 (782)
|....+......+|+||+| +..+.++ .-.+|+++|+||+|+.+| ......+.+.++.+. .|.|+|+++|.
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444455566778999999 3444444 456899999999999999 666666766665543 47899999998
Q ss_pred hhH---------H-HhcCeEEEEe
Q 003981 737 LST---------V-QNAHQIALCS 750 (782)
Q Consensus 737 Lst---------i-~~aD~IiVLd 750 (782)
... + .-||.|+.|+
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEE
Confidence 764 3 3489999987
No 447
>PRK03918 chromosome segregation protein; Provisional
Probab=98.98 E-value=9.9e-10 Score=136.20 Aligned_cols=75 Identities=31% Similarity=0.441 Sum_probs=67.2
Q ss_pred CCCChhHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHhcCeEEEE
Q 003981 677 GLLSGGQRQ------RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQNAHQIALC 749 (782)
Q Consensus 677 ~~LSGGQrQ------RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~aD~IiVL 749 (782)
..||||||| |+||||+++.+|+++||||||++||+.+...+.+.|..+.. +.|+|+|||+......||+|++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 469999999 56677789999999999999999999999999999987653 67999999999988889999999
Q ss_pred eC
Q 003981 750 SD 751 (782)
Q Consensus 750 d~ 751 (782)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
No 448
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.97 E-value=1.2e-09 Score=131.75 Aligned_cols=81 Identities=12% Similarity=0.132 Sum_probs=61.2
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhc-CCcEEEEEecChhHHHhcCeEEEEeC
Q 003981 674 ERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDA-LNHLM-KGRTTLVIAHRLSTVQNAHQIALCSD 751 (782)
Q Consensus 674 E~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~-L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~ 751 (782)
.+-+.||+|++|+..|+|++ .+|+++|||||++++|+..-..+..+ ++.+. +++++|++||.......+.....+.+
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~ 464 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVEN 464 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEE
Confidence 45577999999999999999 89999999999999999766666444 44432 57899999999887665433323345
Q ss_pred CEEE
Q 003981 752 GRIA 755 (782)
Q Consensus 752 G~Iv 755 (782)
+.+.
T Consensus 465 ~~~~ 468 (782)
T PRK00409 465 ASVE 468 (782)
T ss_pred EEEE
Confidence 5553
No 449
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.97 E-value=9.4e-10 Score=140.28 Aligned_cols=75 Identities=32% Similarity=0.414 Sum_probs=68.7
Q ss_pred CCCCCChhHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEE
Q 003981 675 RGGLLSGGQRQRIAIARAL----LKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALC 749 (782)
Q Consensus 675 ~G~~LSGGQrQRIaIARAL----lr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVL 749 (782)
....||||||||++|||++ +++||++||||||++||..+...+.+.|..+.++.|+|+|||++..+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 3457999999999999998 57889999999999999999999999999887788999999999999999999754
No 450
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.96 E-value=1.1e-09 Score=111.85 Aligned_cols=78 Identities=32% Similarity=0.431 Sum_probs=66.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC------------CCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHH
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYE------------PTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~------------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIr 631 (782)
++|+.++|+||||||||||+++|++.++ |..|+ ++|.|+..++.+++++. +.|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999986 88899 69999999999999885 4688999999999
Q ss_pred HHHHcCCCCCCCCHHHHHHHH
Q 003981 632 ENIAYGLPDENVSKDDIIKAA 652 (782)
Q Consensus 632 eNI~~G~p~~~~s~eei~~A~ 652 (782)
+|. ||. +.+.+.+++
T Consensus 78 ~~~-y~~-----~~~~i~~~l 92 (205)
T PRK00300 78 GNY-YGT-----PRSPVEEAL 92 (205)
T ss_pred Ccc-ccC-----cHHHHHHHH
Confidence 994 773 356666555
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.96 E-value=1.1e-09 Score=111.30 Aligned_cols=119 Identities=20% Similarity=0.261 Sum_probs=78.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC-ccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHH
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEPT-GGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKD 646 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p~-~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~e 646 (782)
.+.|+||+||||||+++.|++.+++. .|.|..-+.++. +... ...+++.|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~------------------------ 54 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQR------------------------ 54 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeec------------------------
Confidence 68999999999999999999988754 567665544432 1100 011122221
Q ss_pred HHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 003981 647 DIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK 726 (782)
Q Consensus 647 ei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~ 726 (782)
.+|.+...++. +|++||..+|+++++||+. |.++- ..+++....
T Consensus 55 ------------------------~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~---~~~l~~a~~ 98 (198)
T cd01131 55 ------------------------EVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETI---RLALTAAET 98 (198)
T ss_pred ------------------------ccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHH---HHHHHHHHc
Confidence 01111111111 4889999999999999996 55543 344444456
Q ss_pred CcEEEEEecChhHHHhcCeEEEEe
Q 003981 727 GRTTLVIAHRLSTVQNAHQIALCS 750 (782)
Q Consensus 727 ~kTvIvIaHRLsti~~aD~IiVLd 750 (782)
|++++.+.|..+.....||++.|-
T Consensus 99 G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 99 GHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred CCEEEEEecCCcHHHHHhHHHhhc
Confidence 899999999999888889987763
No 452
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.95 E-value=1.7e-06 Score=88.18 Aligned_cols=170 Identities=10% Similarity=0.150 Sum_probs=116.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 168 SLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMS 247 (782)
Q Consensus 168 ~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (782)
...|++++++.+...+.+..+++.++.|++.+..||.+.+++..... .++.+.++..++...+..+-.++..++-.
T Consensus 3 ~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~~~~~----~~~~~~l~~~~igaaRR~~DTRvf~rIy~ 78 (237)
T PF13748_consen 3 AIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDVWQAL----MYAALVLLMWAIGAARRIYDTRVFSRIYA 78 (237)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH----HHHHHHHHHHHHhhhhHHHhhHHHHHHHH
Confidence 56788999999999999999999999999999999999876533222 22223333333344444444444444444
Q ss_pred HHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003981 248 IVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVL 327 (782)
Q Consensus 248 ~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~l~~~~ 327 (782)
++-..++-+-- -++.+++.+..|++- ...+-+|+...+| ..+.+++.+++++++++.++.++++.++.++.
T Consensus 79 ~la~~vi~~qr------~~~~~~S~i~ARv~l-sRE~VdFfE~~lP--~lits~vsivga~vmLl~~e~~~g~~~l~~l~ 149 (237)
T PF13748_consen 79 ELAVPVILSQR------QQGLSVSTIAARVAL-SREFVDFFEQHLP--TLITSVVSIVGAAVMLLVFEFWLGLACLLILA 149 (237)
T ss_pred HHhHHHHHHHH------HhCCChhHHHHHHHH-HHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333221 345678889999854 5567788888886 36788899999999999999999988777766
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Q 003981 328 TVSVLVAVYKRSTVPVFKAHGLA 350 (782)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~ 350 (782)
++.++...|.++....+.+.+..
T Consensus 150 ~~~~i~~~f~~~~~~L~~~LNnr 172 (237)
T PF13748_consen 150 LFLLILPRFARRNYRLYRRLNNR 172 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 66666666766665555544433
No 453
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.93 E-value=2.5e-09 Score=134.28 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=69.4
Q ss_pred CCCCChhHHHHHHHHHHhcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-c
Q 003981 676 GGLLSGGQRQRIAIARALLK----------NAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-A 743 (782)
Q Consensus 676 G~~LSGGQrQRIaIARALlr----------~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-a 743 (782)
-.+|||||++|++||+||.. +|++|||||||++||+.+...+.+.|+++. .|+|++||||....... +
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 36799999999999999985 799999999999999999999999998874 58899999999988755 8
Q ss_pred CeEEEEeCC
Q 003981 744 HQIALCSDG 752 (782)
Q Consensus 744 D~IiVLd~G 752 (782)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999765
No 454
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.92 E-value=5.8e-09 Score=116.71 Aligned_cols=167 Identities=22% Similarity=0.218 Sum_probs=118.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
++-++++-.|.. +..+++++ |++.+||+++|+|++|+|||||++.|+|.++|+.|.|.+.|+.-
T Consensus 131 ~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------- 194 (432)
T PRK06793 131 FEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------- 194 (432)
T ss_pred hheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc-------------
Confidence 455666666653 34678885 99999999999999999999999999999999998887776632
Q ss_pred EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc---
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL--- 694 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl--- 694 (782)
.+++|.+.. .++..+++ .|.+=..-.+-|.|+|+|.+.+.+.+
T Consensus 195 ----------~ev~e~~~~--------------~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 195 ----------REVKDFIRK--------------ELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred ----------ccHHHHHHH--------------Hhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 234444431 00001110 12222445678999999999999988
Q ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEEeCCEEEEecC
Q 003981 695 ----KNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGT 759 (782)
Q Consensus 695 ----r~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gt 759 (782)
.++-++++||+|...|+. +.|-..+.+.- .|.|..+-+|-.+.+++|-+ .++|.|...++
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 788999999999999996 55555565544 47788888884444555554 47888865543
No 455
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.89 E-value=7.2e-08 Score=90.13 Aligned_cols=117 Identities=36% Similarity=0.430 Sum_probs=86.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCc-cEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTG-GRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV 643 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~-G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~ 643 (782)
++..+.|+||+||||||+++.|++.+.... +.+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999988655 5666666533222211111
Q ss_pred CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH----
Q 003981 644 SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQD---- 719 (782)
Q Consensus 644 s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~---- 719 (782)
.....+......+++.++..+++|-..+++++++||+....+.........
T Consensus 51 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~ 105 (148)
T smart00382 51 -------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEEL 105 (148)
T ss_pred -------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhh
Confidence 333445566788999999999999998999999999999999977766553
Q ss_pred ---HHHHhcCCcEEEEEecC
Q 003981 720 ---ALNHLMKGRTTLVIAHR 736 (782)
Q Consensus 720 ---~L~~l~~~kTvIvIaHR 736 (782)
.......+..+|.++|.
T Consensus 106 ~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 106 RLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHHHhcCCCEEEEEeCC
Confidence 22333456777777883
No 456
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.89 E-value=3e-09 Score=135.66 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=74.0
Q ss_pred CccccccCCC------CCCChhHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecC
Q 003981 667 GYDTLVGERG------GLLSGGQRQRIAIARALL----KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHR 736 (782)
Q Consensus 667 GldT~VGE~G------~~LSGGQrQRIaIARALl----r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHR 736 (782)
|++..|...| ..||||||++++||+++. ++||++|||||+++||+.....+.+.|..+.++.++|+|||+
T Consensus 1057 ~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1057 GLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 4555554333 479999999999999997 588999999999999999999999999998888899999999
Q ss_pred hhHHHhcCeEEEEeC
Q 003981 737 LSTVQNAHQIALCSD 751 (782)
Q Consensus 737 Lsti~~aD~IiVLd~ 751 (782)
..++..||+++.+..
T Consensus 1137 ~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1137 SPMIEYADRAIGVTM 1151 (1164)
T ss_pred HHHHHhcceeEeEEE
Confidence 999999999987653
No 457
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.88 E-value=4.8e-09 Score=115.25 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=51.7
Q ss_pred cccEEEEeeEEEcCCCCCcccee-----------eeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 003981 535 SGDICLEDVYFSYPLRPDVVILN-----------GLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT 593 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~-----------~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~ 593 (782)
.+.|+|+||+|.||+ +..+|+ |+++.|.+||+++||||+|||||||+++|.+.+...
T Consensus 128 ~~ri~Fe~LTf~YP~--er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 128 KNRVLFENLTPLYPN--ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCeEEEEeeecCCC--ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 567999999999984 347897 999999999999999999999999999999998754
No 458
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.88 E-value=1.3e-08 Score=98.81 Aligned_cols=128 Identities=18% Similarity=0.135 Sum_probs=77.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHH
Q 003981 569 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDI 648 (782)
Q Consensus 569 vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei 648 (782)
++|.|++|+||||+++.+++...+..|.|.+-+ ++...- .++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-------------------~e~~~~--~~~~~~~~~~---------- 50 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD-------------------IEEEIE--ELTERLIGES---------- 50 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE-------------------CCcchH--HHHHHHhhhh----------
Confidence 689999999999999999998877656554433 322100 0111110000
Q ss_pred HHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH----------HHHHHH
Q 003981 649 IKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAV----------SERLVQ 718 (782)
Q Consensus 649 ~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~----------tE~~I~ 718 (782)
. ...+++ ...+......-+.++.++++.+++...+|+++|+||+++-+|.. ..+.+.
T Consensus 51 --------~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~ 117 (165)
T cd01120 51 --------L----KGALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELR 117 (165)
T ss_pred --------h----cccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHH
Confidence 0 000111 11122222233455666889999999999999999999665553 334554
Q ss_pred HHHHHhc-CCcEEEEEecChhHH
Q 003981 719 DALNHLM-KGRTTLVIAHRLSTV 740 (782)
Q Consensus 719 ~~L~~l~-~~kTvIvIaHRLsti 740 (782)
+.+.... .+.|+|+++|.....
T Consensus 118 ~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 118 ELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHhcCCceEEEEEecCCcc
Confidence 4444443 388999999987544
No 459
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.72 E-value=1.5e-07 Score=98.37 Aligned_cols=152 Identities=15% Similarity=0.089 Sum_probs=87.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHH-HcCCCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENI-AYGLPD 640 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI-~~G~p~ 640 (782)
-+++|+.+.|.|++||||||++..++-..-...+. +.|+..+-.. ..+.+|. .+|-
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~-------------------~~y~~~e~~~--~~~~~~~~~~g~-- 77 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKK-------------------VYVITTENTS--KSYLKQMESVKI-- 77 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCE-------------------EEEEEcCCCH--HHHHHHHHHCCC--
Confidence 48999999999999999999999885321112222 4455443211 1222222 2221
Q ss_pred CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc--CCCEEEEeCCCCCCCH---HHHH
Q 003981 641 ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK--NAPILILDEATSALDA---VSER 715 (782)
Q Consensus 641 ~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr--~p~ILILDEaTSALD~---~tE~ 715 (782)
+.++... -+...++..-| ++....|.++++.+...+..++ +|+++|+||+|+.+|. ..-.
T Consensus 78 ---~~~~~~~----~g~l~i~~~~~--------~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~ 142 (234)
T PRK06067 78 ---DISDFFL----WGYLRIFPLNT--------EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDIL 142 (234)
T ss_pred ---ChhHHHh----CCCceEEeccc--------cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHH
Confidence 1111000 00001111111 1223457789999999999998 9999999999975554 3333
Q ss_pred HHHHHHHHh-cCCcEEEEEecChhH-------H-HhcCeEEEEeC
Q 003981 716 LVQDALNHL-MKGRTTLVIAHRLST-------V-QNAHQIALCSD 751 (782)
Q Consensus 716 ~I~~~L~~l-~~~kTvIvIaHRLst-------i-~~aD~IiVLd~ 751 (782)
.+.+.++.+ .+++|+++++|.... + .-+|-++.|+.
T Consensus 143 ~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 143 NFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 333334432 357899999997542 2 22577777763
No 460
>PRK02224 chromosome segregation protein; Provisional
Probab=98.71 E-value=2.4e-08 Score=123.94 Aligned_cols=77 Identities=32% Similarity=0.425 Sum_probs=67.1
Q ss_pred CCCChhHHH------HHHHHHHhccC------CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEecChhHHHh
Q 003981 677 GLLSGGQRQ------RIAIARALLKN------APILILDEATSALDAVSERLVQDALNHLMK-G-RTTLVIAHRLSTVQN 742 (782)
Q Consensus 677 ~~LSGGQrQ------RIaIARALlr~------p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~-kTvIvIaHRLsti~~ 742 (782)
..||||||| |+||||++..+ ++++||||||++||+.....+.+.|..+.. + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 367999999999999999999988887653 4 479999999999999
Q ss_pred cCeEEEEeCCE
Q 003981 743 AHQIALCSDGR 753 (782)
Q Consensus 743 aD~IiVLd~G~ 753 (782)
||+|++|.+..
T Consensus 860 ad~~~~~~~~~ 870 (880)
T PRK02224 860 ADDLVRVEKDP 870 (880)
T ss_pred cCeeEEeecCC
Confidence 99999997543
No 461
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.70 E-value=9.4e-08 Score=98.50 Aligned_cols=139 Identities=20% Similarity=0.234 Sum_probs=82.6
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CccEEEECCeeCCCCChHhhhhceEEEcccCCCC-ccc
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLF-SVS 629 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF-~gT 629 (782)
+..|-+|++|++++|++++|.||+|+||||+++.+....-. ..|.- ++-+ +..++++. .+| .-.
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~----vpa~-------~~~i~~~~---~i~~~~~ 81 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD----VPAK-------SMRLSLVD---RIFTRIG 81 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc----cCcc-------ccEecccc---EEEEecC
Confidence 35788999999999999999999999999999988754211 11110 0000 00122211 112 123
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 003981 630 VGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSAL 709 (782)
Q Consensus 630 IreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSAL 709 (782)
-.||+..|. +.. ..|+.+.. ..+. ...+|+++||||+.++.
T Consensus 82 ~~d~~~~~~--StF-~~e~~~~~------~il~------------------------------~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 82 ARDDIMKGE--STF-MVELSETA------NILR------------------------------HATPDSLVILDELGRGT 122 (218)
T ss_pred cccccccCc--chH-HHHHHHHH------HHHH------------------------------hCCCCeEEEEecccCCC
Confidence 334444331 000 12222211 1111 12478999999999999
Q ss_pred CHHHHHHHHHH-HHHhcC--CcEEEEEecChhHHHhc
Q 003981 710 DAVSERLVQDA-LNHLMK--GRTTLVIAHRLSTVQNA 743 (782)
Q Consensus 710 D~~tE~~I~~~-L~~l~~--~kTvIvIaHRLsti~~a 743 (782)
|+.....+..+ ++.+.+ ++++|++||........
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 99665555555 555544 79999999998876654
No 462
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.66 E-value=4.9e-08 Score=122.25 Aligned_cols=76 Identities=32% Similarity=0.316 Sum_probs=64.1
Q ss_pred CCCCChhHHHHHHHHHHhcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCe
Q 003981 676 GGLLSGGQRQRIAIARALLK--------NAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQ 745 (782)
Q Consensus 676 G~~LSGGQrQRIaIARALlr--------~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~ 745 (782)
-.+|||||+|+++|||||.. +|++|+|||||++||+.+...+.+.|..+. .|+||+||||--..... ..+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 46799999999999999995 899999999999999999999999998875 68999999995555433 445
Q ss_pred EEEEeC
Q 003981 746 IALCSD 751 (782)
Q Consensus 746 IiVLd~ 751 (782)
|.|-..
T Consensus 1027 i~V~k~ 1032 (1047)
T PRK10246 1027 IKVKKI 1032 (1047)
T ss_pred EEEEEC
Confidence 555543
No 463
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.65 E-value=4.5e-08 Score=109.73 Aligned_cols=85 Identities=22% Similarity=0.295 Sum_probs=71.2
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEEC---CeeCCCCChHhh
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVG---GEDLRTFDKSEW 612 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~id---G~di~~i~~~~l 612 (782)
+-++.++++..|.. +..+++.++ +|.+||+++|+|+||||||||++.|+|+.+|+.|.|.+. |.++.++..+.+
T Consensus 138 ~~~~r~~v~~~l~T--Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRT--GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCC--CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 45899999999974 467899996 999999999999999999999999999999999999885 567666554433
Q ss_pred ----hhceEEEcccC
Q 003981 613 ----ARVVSIVNQEP 623 (782)
Q Consensus 613 ----R~~Ia~V~Q~~ 623 (782)
++.|++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 35799999954
No 464
>PRK01889 GTPase RsgA; Reviewed
Probab=98.64 E-value=2.3e-08 Score=110.67 Aligned_cols=135 Identities=22% Similarity=0.222 Sum_probs=95.4
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHH
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~ 635 (782)
++.+.-.+++|++++|||+||+|||||++.|+|...+..|+|.++|...+. ...++++.+++|+.+||+.+-..|+.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhhc
Confidence 556666788999999999999999999999999999999999998754333 23456899999999999998888888
Q ss_pred cCCCCCC--CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 636 YGLPDEN--VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 636 ~G~p~~~--~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
+..+... ....++.+.++.|..++....-..|-...-.-.-.+|| ++|..--+.|++.
T Consensus 262 l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~---~~r~~~Y~~l~~e 321 (356)
T PRK01889 262 LWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELD---ERRLQSYRKLQRE 321 (356)
T ss_pred ccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 8743211 12256666666666655433333332111111113454 7888888888765
No 465
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.64 E-value=2.5e-07 Score=113.55 Aligned_cols=54 Identities=30% Similarity=0.327 Sum_probs=48.4
Q ss_pred HHHHhccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh
Q 003981 689 IARALLKNAPILILDEATSAL-DAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN 742 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSAL-D~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~ 742 (782)
|+|++..+|+++++|||++.| |+...+.+.+.++..+ .|.++|++||.++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 789999999999999999999 6899999999998775 48899999999998764
No 466
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.61 E-value=6.8e-08 Score=100.02 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=52.9
Q ss_pred CCChhHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHH
Q 003981 678 LLSGGQRQRIAIARALLKNA---PILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTV 740 (782)
Q Consensus 678 ~LSGGQrQRIaIARALlr~p---~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti 740 (782)
.+|.|+||.+.|+-+++..+ .++++|||-++|++...+.+.+.|++..+ +.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 46999999999999988776 89999999999999999999999988776 78899999998754
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.58 E-value=9e-08 Score=96.40 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=67.7
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCC--C-cccHH
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVL--F-SVSVG 631 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~L--F-~gTIr 631 (782)
..+=+.+.+++|+.++|+|++||||||+++.|+++++|+.|.|.+.+.+- +... .+..++++.|.... + .-|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E--~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAE--LQLP-HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccc--cCCC-CCCEEEEEEecCCCCCCCccCHH
Confidence 44556678999999999999999999999999999999999999977533 3221 24557777665532 2 35778
Q ss_pred HHHHcC---CCC----CCCCHHHHHHHHHHh
Q 003981 632 ENIAYG---LPD----ENVSKDDIIKAAKAA 655 (782)
Q Consensus 632 eNI~~G---~p~----~~~s~eei~~A~~~a 655 (782)
+++... .|+ .++.++|.+++++.+
T Consensus 91 ~~l~~~lR~~pd~i~igEir~~ea~~~~~a~ 121 (186)
T cd01130 91 DLLRSALRMRPDRIIVGEVRGGEALDLLQAM 121 (186)
T ss_pred HHHHHHhccCCCEEEEEccCcHHHHHHHHHH
Confidence 777543 232 134455555555443
No 468
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.48 E-value=1.1e-07 Score=106.60 Aligned_cols=83 Identities=24% Similarity=0.358 Sum_probs=66.3
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCcc---EEEECCeeCCCCChHhh------hhceEEEcccC
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG---RITVGGEDLRTFDKSEW------ARVVSIVNQEP 623 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G---~I~idG~di~~i~~~~l------R~~Ia~V~Q~~ 623 (782)
..+++++ |+|.+||+++|+|++|+|||||+++|+|+++++.+ .|-.+|.+++++..+.+ |..|++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4689999 99999999999999999999999999999998864 44455666666554444 45799999998
Q ss_pred CCCc-ccHHHHHHc
Q 003981 624 VLFS-VSVGENIAY 636 (782)
Q Consensus 624 ~LF~-gTIreNI~~ 636 (782)
..+. -++.+|+.+
T Consensus 222 s~~~rl~a~e~a~~ 235 (434)
T PRK07196 222 SPLMRIKATELCHA 235 (434)
T ss_pred ChhhhHHHHHHHHH
Confidence 7764 477777753
No 469
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.45 E-value=3.6e-07 Score=103.89 Aligned_cols=163 Identities=19% Similarity=0.259 Sum_probs=95.3
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHH
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~ 635 (782)
+++.++.+++|+.+++|||+|+||||++..|++.+.+..|.. +|++|++|+ |.-+..||+.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr 306 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLR 306 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHH
Confidence 344555677899999999999999999999999987776642 488999998 7777899997
Q ss_pred cC-----CCCCCC-CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC-----CEEEEeC
Q 003981 636 YG-----LPDENV-SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA-----PILILDE 704 (782)
Q Consensus 636 ~G-----~p~~~~-s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p-----~ILILDE 704 (782)
++ .|...+ +..+... . +..+.+.....|..-|.+-. ...+.-+.+++.++ .+|+||.
T Consensus 307 ~~AeilGVpv~~~~~~~Dl~~--a-------L~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdA 374 (484)
T PRK06995 307 IYGKILGVPVHAVKDAADLRL--A-------LSELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNA 374 (484)
T ss_pred HHHHHhCCCeeccCCchhHHH--H-------HHhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 53 121111 1122222 1 23444444555555443211 11223333344443 6899998
Q ss_pred CCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhH---------HHh-cCeEEEEeCCEEE
Q 003981 705 ATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLST---------VQN-AHQIALCSDGRIA 755 (782)
Q Consensus 705 aTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLst---------i~~-aD~IiVLd~G~Iv 755 (782)
.|..-| +.+.++.+. .+.+-+|+|+=-.+ +.. -=-|..+-.|+=|
T Consensus 375 t~~~~~------l~~i~~~f~~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 375 TSHGDT------LNEVVQAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred CCcHHH------HHHHHHHhccCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 887632 333333322 35566777763222 111 1235667777644
No 470
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.45 E-value=1.3e-06 Score=96.45 Aligned_cols=173 Identities=28% Similarity=0.389 Sum_probs=120.7
Q ss_pred eEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHH-HcCCCCCccEEEECCeeCCCCChHhhhhceEEEcc
Q 003981 543 VYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLL-ARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQ 621 (782)
Q Consensus 543 VsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL-~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q 621 (782)
|+|..|.+ -.+.+ +-||+| .+.|||.-=-|||||++.| .|-|+---| ||... +|.
T Consensus 227 ve~~LP~~---g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~-------------VVT- 282 (448)
T PF09818_consen 227 VEIELPNG---GTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREF-------------VVT- 282 (448)
T ss_pred EEEECCCC---CEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceE-------------EEE-
Confidence 77877742 23344 578999 9999999999999999998 678886555 55521 111
Q ss_pred cCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 003981 622 EPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILI 701 (782)
Q Consensus 622 ~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILI 701 (782)
++.- ...- + |+ -+..+.+.+..||.+||.|.||. ----.+=||---|=-.|..||=..+++|+
T Consensus 283 ~~~a--------vkir-----A--ED-GR~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LL 345 (448)
T PF09818_consen 283 DPDA--------VKIR-----A--ED-GRSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLL 345 (448)
T ss_pred CCCc--------eEEE-----e--cC-CceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEE
Confidence 1100 0000 0 00 12344578899999999999997 33345679999999999999999999999
Q ss_pred EeCCCCCC-----CHHHHHHH----------HHHHHHhc--CCcEEEEEecC-hhHHHhcCeEEEEeCCEEEE
Q 003981 702 LDEATSAL-----DAVSERLV----------QDALNHLM--KGRTTLVIAHR-LSTVQNAHQIALCSDGRIAE 756 (782)
Q Consensus 702 LDEaTSAL-----D~~tE~~I----------~~~L~~l~--~~kTvIvIaHR-Lsti~~aD~IiVLd~G~Ive 756 (782)
+||=|||- |..-++.| .+-++.+. .|-++|+|+=- =.++.-||+|++||+=+-.+
T Consensus 346 iDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~d 418 (448)
T PF09818_consen 346 IDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPKD 418 (448)
T ss_pred EcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccchh
Confidence 99999997 66667766 12233332 35555655544 45678899999999977543
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.40 E-value=9.2e-07 Score=97.68 Aligned_cols=122 Identities=20% Similarity=0.246 Sum_probs=79.6
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE 641 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~ 641 (782)
.+++..+.|.||+||||||+++.|++.+++ .+|.|..-+.++.-.. .....++.|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~----~~~~~~i~q-------------------- 174 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH----RNKRSLINQ-------------------- 174 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc----cCccceEEc--------------------
Confidence 467899999999999999999999997764 4677665443321100 000000100
Q ss_pred CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 003981 642 NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDAL 721 (782)
Q Consensus 642 ~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L 721 (782)
..+|..+.+ --=+|++||-.+|+++++||+. |.++-....++
T Consensus 175 ----------------------------~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a- 216 (343)
T TIGR01420 175 ----------------------------REVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA- 216 (343)
T ss_pred ----------------------------cccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH-
Confidence 111211111 1235788999999999999997 88877654443
Q ss_pred HHhcCCcEEEEEecChhHHHhcCeEEE
Q 003981 722 NHLMKGRTTLVIAHRLSTVQNAHQIAL 748 (782)
Q Consensus 722 ~~l~~~kTvIvIaHRLsti~~aD~IiV 748 (782)
...|.+++...|..+.....||++-
T Consensus 217 --a~tGh~v~~T~Ha~~~~~~~~Rl~~ 241 (343)
T TIGR01420 217 --AETGHLVFGTLHTNSAAQTIERIID 241 (343)
T ss_pred --HHcCCcEEEEEcCCCHHHHHHHHHH
Confidence 3468999999999877766666643
No 472
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.38 E-value=7.4e-07 Score=93.44 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=35.8
Q ss_pred HhccCCCEEEEeCCCCC------CCHHHHHHHHHHHHHhc--CCcEEEEEecCh
Q 003981 692 ALLKNAPILILDEATSA------LDAVSERLVQDALNHLM--KGRTTLVIAHRL 737 (782)
Q Consensus 692 ALlr~p~ILILDEaTSA------LD~~tE~~I~~~L~~l~--~~kTvIvIaHRL 737 (782)
+..++|+++|+| |+++ .|+.....+.+.|.++. .++|+|+++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 345799999999 7654 68887778888887765 389999999976
No 473
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.37 E-value=4.1e-06 Score=82.14 Aligned_cols=164 Identities=20% Similarity=0.232 Sum_probs=101.5
Q ss_pred cEEEEECCCCCcHHHHHHHHH---cCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCC-CCCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLA---RFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL-PDEN 642 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~---gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~-p~~~ 642 (782)
..+-|+|.+|||||||+..|+ |++..-.|. -..|. ...-+..+.+|+.+-+ |.+.
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~-n~~~~--------------------~~~s~s~l~~~~k~~~~~k~~ 96 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGK-NFKGE--------------------LDASHSALVDYAKLHKRKKPP 96 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCc-CcCcc--------------------cccccchHHHhHHHhhcCCCC
Confidence 378899999999999999874 555432222 11111 1111223445554421 1110
Q ss_pred ----CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCC---CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 003981 643 ----VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGG---LLSGGQRQRIAIARALLKNAPILILDEATSALDAVSER 715 (782)
Q Consensus 643 ----~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~---~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~ 715 (782)
..-|....++. .++|+ + -+.+-+|. .-|-|+-=-=-+.|.+ .+.-|+|||||-|+|-+.-+-
T Consensus 97 ~g~FlRAEs~yn~as--~~De~----~----~e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQl 165 (233)
T COG3910 97 IGFFLRAESFYNVAS--YLDEA----D----GEANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQL 165 (233)
T ss_pred cceEEehhHHHHHHH--HHHhh----h----hhcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHH
Confidence 12345555553 22222 1 11112333 3488987766677776 567899999999999998888
Q ss_pred HHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 716 LVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 716 ~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
.+..-|+++. .|.-+|+.||.+=.+.. --.|+-++.|-|. .=+++|.
T Consensus 166 ella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~-~~~fe~t 214 (233)
T COG3910 166 ELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIE-ERDFEET 214 (233)
T ss_pred HHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCcc-ccchHHH
Confidence 8888888775 47788889999866543 3488999888754 4455554
No 474
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=98.36 E-value=0.0038 Score=66.68 Aligned_cols=225 Identities=11% Similarity=0.067 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 003981 232 VIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICIL 311 (782)
Q Consensus 232 ~~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l 311 (782)
.+..+...+...+....+....++|--++ ++.---.+|+..|+.+....+..... ..+.++.+++..+-++
T Consensus 74 v~~~ff~shyiFrWR~Am~~yY~~~W~~~-------r~IEGASQRIQEDtmrfa~i~E~Lgv--~~i~simtliaFlPiL 144 (315)
T PF05992_consen 74 VLNSFFVSHYIFRWRTAMNEYYMSHWPKL-------RHIEGASQRIQEDTMRFAKIMEDLGV--SFIRSIMTLIAFLPIL 144 (315)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------ccCccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 33344444555677777777777776555 23333467999999888877765443 3566666677666666
Q ss_pred HHHhhHHH-----------HH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHH
Q 003981 312 FNIAPQLA-----------PI--LGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQM 378 (782)
Q Consensus 312 ~~~~~~La-----------li--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~ 378 (782)
+.++-.+. ++ +++..++..++......+.....-+.++..+...+ |-+-|=.. .-....+...
T Consensus 145 ~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRK---eLV~gED~-~~ra~~~tl~ 220 (315)
T PF05992_consen 145 WELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRK---ELVYGEDD-ANRAQPPTLR 220 (315)
T ss_pred HHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHH---HHHhcCcc-cccCCchhHH
Confidence 66553332 11 11122222233334444444444444444443333 22222111 1223334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 379 LMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGD 458 (782)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~ 458 (782)
+.|.+..+.+.+.-.....+........++.. +.-+.+-+--+..|.+|+|.+......+.++..+++.+.+.+..
T Consensus 221 eLF~~Vr~Ny~rly~hy~yfni~~~~y~q~~~----i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~sfq~lv~~W~t 296 (315)
T PF05992_consen 221 ELFSNVRRNYFRLYFHYMYFNIARISYLQFDV----IFPYIILIPSIVAGAITLGVLQQISNAFGQVRSSFQYLVNSWTT 296 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 55665555555555444444433333333222 22222234455679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 003981 459 LRGTFAAVERINSIL 473 (782)
Q Consensus 459 l~~a~~s~~RI~~ll 473 (782)
+.+.....+|+.++-
T Consensus 297 ivEL~Si~kRL~~FE 311 (315)
T PF05992_consen 297 IVELRSIYKRLRAFE 311 (315)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999873
No 475
>PRK08149 ATP synthase SpaL; Validated
Probab=98.34 E-value=5e-07 Score=101.18 Aligned_cols=70 Identities=27% Similarity=0.401 Sum_probs=61.0
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCc---cEEEECCeeCCCCChHhhh----hceEEEccc
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG---GRITVGGEDLRTFDKSEWA----RVVSIVNQE 622 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~---G~I~idG~di~~i~~~~lR----~~Ia~V~Q~ 622 (782)
+..+++++ +++.+||+++|+|+||+|||||++.|++.++++. |.|-.+|.++.++..+.++ +++++|...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 34689999 9999999999999999999999999999999988 9999999999888766665 566776553
No 476
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=6.6e-07 Score=99.46 Aligned_cols=63 Identities=35% Similarity=0.518 Sum_probs=56.7
Q ss_pred CCCChhHHHHHHHHHHhcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH
Q 003981 677 GLLSGGQRQRIAIARALLK---------NAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ 741 (782)
Q Consensus 677 ~~LSGGQrQRIaIARALlr---------~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~ 741 (782)
..+|.||+++++||.+|.. +|||||||||+|.||....+.+.+.|.+. +.++++.+|.+..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 3689999999999999999 99999999999999999999999999753 679999999987654
No 477
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.31 E-value=1.4e-07 Score=108.91 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=92.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHH--HcCCCCCccEEEECCeeCCCCChHhhhh---ceEEEcccCCCCcccHHHHHHc
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLL--ARFYEPTGGRITVGGEDLRTFDKSEWAR---VVSIVNQEPVLFSVSVGENIAY 636 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL--~gly~p~~G~I~idG~di~~i~~~~lR~---~Ia~V~Q~~~LF~gTIreNI~~ 636 (782)
=+++|..+.|.|++|||||||+.-. .|.-+..+..+++... -+++++++ .+++-.|+..- .+|+.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4789999999999999999999976 3444445667777653 24444444 34544443210 011221
Q ss_pred CCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHHH
Q 003981 637 GLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA--RALLKNAPILILDEATSALDAVSE 714 (782)
Q Consensus 637 G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA--RALlr~p~ILILDEaTSALD~~tE 714 (782)
-.+ ..........+..++++++ ......+|+||+||+.|+ .++..+|+.+ ....
T Consensus 88 ~~~---~~~~~~~~~~~~~~l~~~l-----------~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r 143 (484)
T TIGR02655 88 LDA---SPDPEGQDVVGGFDLSALI-----------ERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVR 143 (484)
T ss_pred Eec---CchhccccccccCCHHHHH-----------HHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHH
Confidence 100 0000111112222233332 233356899999999999 6776665533 3555
Q ss_pred HHHHHHHHHhc-CCcEEEEEecChhH--------H-H-hcCeEEEEe
Q 003981 715 RLVQDALNHLM-KGRTTLVIAHRLST--------V-Q-NAHQIALCS 750 (782)
Q Consensus 715 ~~I~~~L~~l~-~~kTvIvIaHRLst--------i-~-~aD~IiVLd 750 (782)
+.+.+.++.+. .|+|+|+++|.... + . -||.|+.|+
T Consensus 144 ~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 144 REIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 66666665543 58999999998753 1 2 279999887
No 478
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.31 E-value=5.8e-07 Score=99.39 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=67.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC--Cc-cEEEECCeeCCCCChHhhhhceEEEcccC-----CCCcccHHHHHH
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEP--TG-GRITVGGEDLRTFDKSEWARVVSIVNQEP-----VLFSVSVGENIA 635 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p--~~-G~I~idG~di~~i~~~~lR~~Ia~V~Q~~-----~LF~gTIreNI~ 635 (782)
++|..++|+||+||||||+++.|++++.+ .+ +.|.....++ ++..+.++...++|.|.. .-|..+|+++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999853 33 4665555555 577777777778888864 368899999998
Q ss_pred cCCCCC----CCCHHH-HHHHHHHh
Q 003981 636 YGLPDE----NVSKDD-IIKAAKAA 655 (782)
Q Consensus 636 ~G~p~~----~~s~ee-i~~A~~~a 655 (782)
.. |+- ++.|.| +..|++.|
T Consensus 211 ~~-Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 RK-PHAILVGEARDAETISAALEAA 234 (358)
T ss_pred cC-CCEEeeeeeCCHHHHHHHHHHH
Confidence 74 542 345555 45566663
No 479
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.28 E-value=1.2e-05 Score=98.63 Aligned_cols=190 Identities=20% Similarity=0.248 Sum_probs=106.6
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce-----EEEccc-----CCCCc
Q 003981 558 GLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV-----SIVNQE-----PVLFS 627 (782)
Q Consensus 558 ~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I-----a~V~Q~-----~~LF~ 627 (782)
.+|+.+.++..++|+|+||||||||++.|++.+....++|.+-+.+-. -..+-+.+ -+=+-. |+=..
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~~~---~~~~~~a~gG~y~~i~~~~~~~~NPf~l~ 514 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDRG---AEIFIRALNGVYTVIEPRLKCNFNPLQLD 514 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCCcC---HHHHHHhcCCEEEEecCCCCcccCCCCCC
Confidence 457888888999999999999999999999988888888877544322 11111111 111111 21112
Q ss_pred ccHHHHHHc---------CCCCCCCCHH---HHHHHHHHh--------cchhHHHhCC----------------CCc---
Q 003981 628 VSVGENIAY---------GLPDENVSKD---DIIKAAKAA--------NAHDFIISLP----------------QGY--- 668 (782)
Q Consensus 628 gTIreNI~~---------G~p~~~~s~e---ei~~A~~~a--------~l~dfI~~LP----------------~Gl--- 668 (782)
+|- +|+.+ ..+....+++ .|.+|++.+ .+.++.+.|+ +|-
T Consensus 515 ~~~-~~~~~l~~~l~~l~~~~~~~lt~~~~~~I~~av~~~~~~~~~~rtl~~l~~~l~~~~~~~L~~~L~~~~~~G~~g~ 593 (800)
T PRK13898 515 DTS-ENRTFLMEWLKVLVTSNGESLTAQDIKRINDAVEGNFKLKKEDRRLSNLVAFLGIDGPNTLAGRIAMWHGKGSHAA 593 (800)
T ss_pred CCh-HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhCChhhCcHHHHHHHhCcCCchHHHHHHHHHhcCCCcEE
Confidence 232 33322 1111123332 344444332 1223333332 111
Q ss_pred --c---cc--------ccCCCCCCCh-hHHHHHH-------HHHHhccCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhc-
Q 003981 669 --D---TL--------VGERGGLLSG-GQRQRIA-------IARALLKNAPILILDEATSALD-AVSERLVQDALNHLM- 725 (782)
Q Consensus 669 --d---T~--------VGE~G~~LSG-GQrQRIa-------IARALlr~p~ILILDEaTSALD-~~tE~~I~~~L~~l~- 725 (782)
| +. +|=....|.. .+-..+. |.+.+-.+|.++++|||...|| +...+.+.+.++..+
T Consensus 594 ~Fd~~~d~l~~~~~~~~~fdl~~l~~~~~~~~~vl~yl~~ri~~~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK 673 (800)
T PRK13898 594 IFDNEEDLLDFQKARVFGFEMGELLKDPVSLAPVLLYLFHRISISLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK 673 (800)
T ss_pred eecCCccccCCCCCcEEEEEchhhcCChhhHHHHHHHHHHHHHHHhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH
Confidence 0 01 1111111211 2211121 2234567899999999999999 788888998888775
Q ss_pred CCcEEEEEecChhH----------HHhcCeEEEEeC
Q 003981 726 KGRTTLVIAHRLST----------VQNAHQIALCSD 751 (782)
Q Consensus 726 ~~kTvIvIaHRLst----------i~~aD~IiVLd~ 751 (782)
.|..++++||.++. +++|+.-+.|-+
T Consensus 674 ~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 674 LNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred cCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 47889999999866 455665555544
No 480
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.28 E-value=1.5e-06 Score=88.55 Aligned_cols=106 Identities=20% Similarity=0.274 Sum_probs=70.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHH
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDD 647 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~ee 647 (782)
+++|+|+.|||||||++.+.+.+.+..| +.+-..|.......++....++++|+..+. +..| |.+.-...++-
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~---g~~~~~~~~~~ 75 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG---VETG---GCPHTAIREDA 75 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcC---CCccceeccCH
Confidence 6899999999999999999999887655 555556666666677777889999987652 1011 11111111222
Q ss_pred HHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 648 IIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 648 i~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
... ...+.+++.++|++..+.|+-.|..+|.-.
T Consensus 76 ~~~---~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 76 SMN---LEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred HHH---HHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 222 234556667788888888988887776655
No 481
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.27 E-value=1e-06 Score=88.65 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=48.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEP 623 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~ 623 (782)
|+.++|+||||||||||+++|++.+.+ .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 6888998888777777788899999984
No 482
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.27 E-value=1e-06 Score=89.49 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=64.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHH-----HHcCCCCCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGEN-----IAYGLPDEN 642 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreN-----I~~G~p~~~ 642 (782)
.++|+|+||||||||++.|.+++ ..|.+ .++++|.+...-+.+++ ..++.|. .
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~-------------------~v~~~D~~~~~~~~~~~~~~~~~~~~~~~-~ 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKV-------------------VIISQDSYYKDLSHEELEERKNNNYDHPD-A 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCe-------------------EEEEecccccccccccHHHhccCCCCCCC-c
Confidence 38999999999999999999988 23333 34444443322222222 2233332 2
Q ss_pred CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 003981 643 VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDA 711 (782)
Q Consensus 643 ~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~ 711 (782)
.+.+.+.+.++.....+. +--..-+.|.|++++-.+ .+.+++++|+|++.+..++
T Consensus 59 ~~~~~~~~~l~~l~~~~~-----------~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 59 FDFDLLISHLQDLKNGKS-----------VEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccHHHHHHHHHHHHCCCC-----------EeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 333444333332222111 222234667777776554 5788999999999999876
No 483
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.27 E-value=5.3e-07 Score=89.97 Aligned_cols=77 Identities=31% Similarity=0.421 Sum_probs=57.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC------------CCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHH
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYE------------PTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGEN 633 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~------------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreN 633 (782)
|++++|+||||||||||++.|++.++ |..|+ ++|.+..-++.+.+.+.+ .++.++..+++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999874 33444 366666666666666653 57888888888888
Q ss_pred HHcCCCCCCCCHHHHHHHHH
Q 003981 634 IAYGLPDENVSKDDIIKAAK 653 (782)
Q Consensus 634 I~~G~p~~~~s~eei~~A~~ 653 (782)
. || .+.+.+.++++
T Consensus 76 ~-y~-----~~~~~i~~~~~ 89 (180)
T TIGR03263 76 Y-YG-----TPKSPVEEALA 89 (180)
T ss_pred e-eC-----CcHHHHHHHHH
Confidence 4 77 34566666654
No 484
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.26 E-value=6.4e-06 Score=93.25 Aligned_cols=184 Identities=23% Similarity=0.215 Sum_probs=112.9
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHH
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIr 631 (782)
+..+++++ +++.+||+++|+|++|+|||||++.|+|..+|+.|.|..-|..-+++. ++.+. ++.+.-.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~---------~~~~~~l 217 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH---------DLGEEGL 217 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH---------Hhccccc
Confidence 35689999 999999999999999999999999999999999988877666444322 11110 1111101
Q ss_pred HHH-HcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCcccccc-CCCCCCChhHHHHHHHHHHhccCCCEEEEeC--CCC
Q 003981 632 ENI-AYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVG-ERGGLLSGGQRQRIAIARALLKNAPILILDE--ATS 707 (782)
Q Consensus 632 eNI-~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VG-E~G~~LSGGQrQRIaIARALlr~p~ILILDE--aTS 707 (782)
++- .+..+.++..-+++..+.-...+.++... +|+|-.+= +.=.++- |-|| .|+ +.+.| .+.
T Consensus 218 ~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~A--~A~R-Eis---------l~~ge~P~~~ 283 (440)
T TIGR01026 218 KRSVVVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRFA--MAQR-EIG---------LAAGEPPATK 283 (440)
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHHH--HHHH-HHH---------HhcCCCCccc
Confidence 111 11111122334555444433444455553 47765542 2111111 1111 111 12345 356
Q ss_pred CCCHHHHHHHHHHHHHhc-CCc-------EEEEEecChhHHHhcCeEEEEeCCEEEEecCHHH
Q 003981 708 ALDAVSERLVQDALNHLM-KGR-------TTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 708 ALD~~tE~~I~~~L~~l~-~~k-------TvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~e 762 (782)
+.|+..-..+.+-+++.. .++ |+++-+|.++ =.-+|++.-+.+|+|+-.+.-.+
T Consensus 284 Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 284 GYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred ccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhh
Confidence 899988888887777654 356 7888899883 33579999999999998766443
No 485
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.23 E-value=9.8e-07 Score=88.08 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=45.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhh-ceEEEcccCCC-CcccHHHHHH
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR-VVSIVNQEPVL-FSVSVGENIA 635 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~-~Ia~V~Q~~~L-F~gTIreNI~ 635 (782)
+|+.++|+|+|||||||+++.|++++.+ +.+||.++.. ...+|+ ..++.+|+... ...++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999887 6899988743 233333 34555555322 2334444444
No 486
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.23 E-value=5.1e-06 Score=95.34 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=57.1
Q ss_pred EEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC
Q 003981 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT 606 (782)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~ 606 (782)
++|++..|+ ...+++++++.+..|+.++++|++|||||||++.|.|+.+|.+|++.+++..|..
T Consensus 187 ~~d~~~v~G---q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 187 QHDLSDVIG---QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred ccCeEEEEC---cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 457888785 3468999999999999999999999999999999999999999999999986643
No 487
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.22 E-value=6.1e-07 Score=85.78 Aligned_cols=73 Identities=33% Similarity=0.487 Sum_probs=57.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCC-------------CccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHH
Q 003981 569 TALVGSSGAGKSTIVQLLARFYEP-------------TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (782)
Q Consensus 569 vaIVG~SGSGKSTLl~LL~gly~p-------------~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~ 635 (782)
++|+||||||||||+++|++.+++ ..|+ ++|++..-++..++++. +.|+.++..++...| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999764 4455 48888888888888774 668889999999999 5
Q ss_pred cCCCCCCCCHHHHHHHH
Q 003981 636 YGLPDENVSKDDIIKAA 652 (782)
Q Consensus 636 ~G~p~~~~s~eei~~A~ 652 (782)
||. ..+++.++.
T Consensus 76 yg~-----~~~~i~~~~ 87 (137)
T cd00071 76 YGT-----SKAAVEEAL 87 (137)
T ss_pred ecC-----cHHHHHHHH
Confidence 773 345565544
No 488
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.17 E-value=4.6e-06 Score=106.20 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=36.0
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHc-CCCCCccEEEECCe
Q 003981 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLAR-FYEPTGGRITVGGE 602 (782)
Q Consensus 559 Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~g-ly~p~~G~I~idG~ 602 (782)
+++..+.++.++|+|++|+|||||++.+.+ +-...+|.+.+++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 456677889999999999999999999944 44556899998864
No 489
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.14 E-value=1.7e-05 Score=74.62 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=40.1
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------CCcEEEEEecChh
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM------KGRTTLVIAHRLS 738 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~------~~kTvIvIaHRLs 738 (782)
++.....++...++.++++||+-.. +......+.+.+.... ++.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 6677778888899999999998765 5556667777776653 4667777877543
No 490
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.14 E-value=3e-06 Score=88.11 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=32.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHH-cCCCCCccEEEECCe
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLA-RFYEPTGGRITVGGE 602 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~-gly~p~~G~I~idG~ 602 (782)
-+++|+.+.|.|++|||||||+..++ ....+.++.+++...
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 48899999999999999999988654 334555667777663
No 491
>PLN02796 D-glycerate 3-kinase
Probab=98.14 E-value=8.8e-07 Score=96.20 Aligned_cols=62 Identities=21% Similarity=0.325 Sum_probs=53.3
Q ss_pred ccceeeeeEEE---eCCcE-----EEEECCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCCChHhhhh
Q 003981 553 VVILNGLNLTL---KSGSV-----TALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 553 ~~vL~~Isl~I---~~Ge~-----vaIVG~SGSGKSTLl~LL~gly~p~---~G~I~idG~di~~i~~~~lR~ 614 (782)
..+++++++++ ++|+. +||+|++|||||||++.|.+++.+. .|.|.+||..+...+...+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 35788898887 67887 9999999999999999999999875 688999999887777777665
No 492
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.13 E-value=4.5e-06 Score=83.30 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=46.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEE-----------CCeeCCCCChHhhhh-----ceEEEcccCCCCc
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV-----------GGEDLRTFDKSEWAR-----VVSIVNQEPVLFS 627 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~i-----------dG~di~~i~~~~lR~-----~Ia~V~Q~~~LF~ 627 (782)
|+.++|+|+||||||||++.|++.+.+. |.+.+ +|.+...++.+++.. .++.+.|...++.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSY 77 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence 6789999999999999999999987654 65544 777777777666643 4888888764443
No 493
>PRK15494 era GTPase Era; Provisional
Probab=98.10 E-value=2.2e-06 Score=94.52 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=50.7
Q ss_pred CCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCc-------EEEEECCCCCcHHHHHHHHHcCC
Q 003981 533 AWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGS-------VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 533 ~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge-------~vaIVG~SGSGKSTLl~LL~gly 590 (782)
...|.+++++|+|+|| ..+++++++++++++|+ +++|||.+|+|||||++.|.|-.
T Consensus 14 ~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 14 EFKGDTEALAAAVRED--ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hhCCccccccccccCC--CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3578999999999999 35679999999999999 99999999999999999998753
No 494
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.09 E-value=5e-06 Score=106.65 Aligned_cols=61 Identities=26% Similarity=0.305 Sum_probs=54.9
Q ss_pred CCCCCChhHHHHHH----HHHH--------hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 003981 675 RGGLLSGGQRQRIA----IARA--------LLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRL 737 (782)
Q Consensus 675 ~G~~LSGGQrQRIa----IARA--------Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRL 737 (782)
+...||||||||++ +|+| +..+|++++|||||++||+.+...+.+.|.++ +.++|+++|++
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 45789999999996 6766 55799999999999999999999999999887 78999999987
No 495
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.03 E-value=1.4e-05 Score=83.27 Aligned_cols=80 Identities=24% Similarity=0.346 Sum_probs=52.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcC-CCC------CccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHH
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARF-YEP------TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gl-y~p------~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~ 635 (782)
+++|+.+.|+|++|||||||+.-++.. ..| .++.|+|++.+ .++.+.+.+.. |..-....++.+||.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i~ 89 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNIY 89 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCEE
Confidence 789999999999999999999988633 334 37889999875 34444444322 111112346778888
Q ss_pred cCCCCCCCCHHHHHHH
Q 003981 636 YGLPDENVSKDDIIKA 651 (782)
Q Consensus 636 ~G~p~~~~s~eei~~A 651 (782)
+..+ .+.+++.+.
T Consensus 90 ~~~~---~~~~~l~~~ 102 (235)
T cd01123 90 VARA---YNSDHQLQL 102 (235)
T ss_pred EEec---CCHHHHHHH
Confidence 7644 344554443
No 496
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.01 E-value=2.4e-05 Score=92.81 Aligned_cols=109 Identities=21% Similarity=0.232 Sum_probs=67.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCcc--------EEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYEPTGG--------RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYG 637 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G--------~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G 637 (782)
.+.+.|+||+|+||||+++++.++..+..| -|.+||.++. .+...+ .|-.+|
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~llg 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPLLG 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHhcC
Confidence 356999999999999999999999865444 4888887653 222221 122333
Q ss_pred CCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 003981 638 LPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLV 717 (782)
Q Consensus 638 ~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I 717 (782)
... +...+...+.++..++.++. +. .-..+||| +|+||| +..||......+
T Consensus 235 ~~~-~~~~~~a~~~l~~~gl~~~~-------~g----~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 235 SVH-DPIYQGARRDLAETGVPEPK-------TG----LVTDAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred Ccc-HHHHHHHHHHHHHcCCCchh-------cC----chhhcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 210 00011222233333332221 11 12356677 999999 799999999888
Q ss_pred HHHHHH
Q 003981 718 QDALNH 723 (782)
Q Consensus 718 ~~~L~~ 723 (782)
.+.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 888865
No 497
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.00 E-value=1e-05 Score=82.96 Aligned_cols=70 Identities=23% Similarity=0.353 Sum_probs=49.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcc---cH--HHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSV---SV--GENIAYGL 638 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~g---TI--reNI~~G~ 638 (782)
+++..|+|+|+||||||||++.|.+.+. + ..+.+++||.+.++. +. +.++.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------~------------~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------D------------ESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------C------------CceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4678999999999999999999999872 1 238889999988755 33 33445555
Q ss_pred CCCCCCHHHHHHHHHHh
Q 003981 639 PDENVSKDDIIKAAKAA 655 (782)
Q Consensus 639 p~~~~s~eei~~A~~~a 655 (782)
|+ ..+.+.+.+.++..
T Consensus 63 ~~-~~~~~~l~~~l~~l 78 (209)
T PRK05480 63 PD-AFDHDLLIEHLKAL 78 (209)
T ss_pred cc-cccHHHHHHHHHHH
Confidence 42 34556666555443
No 498
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.00 E-value=4.4e-06 Score=85.00 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=41.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC-CccEEEECCeeCCCCChHhhhhceEEEcccC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRITVGGEDLRTFDKSEWARVVSIVNQEP 623 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~ 623 (782)
++|++++|+|++|||||||+++|.+.+.+ ..|.+.+||.+++. .+...++|++|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 46889999999999999999999996654 45789999987652 2223355555543
No 499
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.99 E-value=3.5e-06 Score=86.33 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=27.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
++|+.++|+|+||||||||++.|.+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999999764
No 500
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.98 E-value=1.8e-05 Score=98.52 Aligned_cols=77 Identities=26% Similarity=0.321 Sum_probs=66.6
Q ss_pred CCCCChhHHHHH------HHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHhcCeE
Q 003981 676 GGLLSGGQRQRI------AIARALLKN--APILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQNAHQI 746 (782)
Q Consensus 676 G~~LSGGQrQRI------aIARALlr~--p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~aD~I 746 (782)
-.+|||||+=.+ |||..+-.+ -+.|+|||||..||+++-..+.++|.++.. ++++|||||.-.....+|.+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~ 892 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVR 892 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeE
Confidence 357999999754 555666677 699999999999999999999999988875 69999999999999999999
Q ss_pred EEEeCC
Q 003981 747 ALCSDG 752 (782)
Q Consensus 747 iVLd~G 752 (782)
+.++..
T Consensus 893 i~V~k~ 898 (908)
T COG0419 893 IRVKKD 898 (908)
T ss_pred EEEEec
Confidence 988654
Done!