Query 003981
Match_columns 782
No_of_seqs 409 out of 2784
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 10:20:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1E-104 3E-109 1004.8 71.5 574 160-779 59-655 (1321)
2 4f4c_A Multidrug resistance pr 100.0 2E-101 7E-106 974.3 55.2 569 166-779 743-1318(1321)
3 3qf4_A ABC transporter, ATP-bi 100.0 5.7E-98 2E-102 874.7 70.7 567 164-778 12-579 (587)
4 4a82_A Cystic fibrosis transme 100.0 2.7E-97 9E-102 868.5 69.8 568 163-778 2-577 (578)
5 3qf4_B Uncharacterized ABC tra 100.0 7.1E-98 2E-102 876.2 65.1 569 161-779 23-592 (598)
6 3b5x_A Lipid A export ATP-bind 100.0 7.1E-95 2.4E-99 849.0 78.8 569 161-778 11-580 (582)
7 3b60_A Lipid A export ATP-bind 100.0 9.6E-95 3.3E-99 847.9 74.6 569 161-778 11-580 (582)
8 2yl4_A ATP-binding cassette SU 100.0 2.3E-94 8E-99 846.7 75.8 573 162-779 6-585 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 1.6E-93 5.4E-98 900.6 60.3 571 162-778 34-626 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 7.9E-88 2.7E-92 848.7 60.0 573 164-780 694-1273(1284)
11 3nh6_A ATP-binding cassette SU 100.0 4.9E-70 1.7E-74 585.9 28.9 241 535-779 51-291 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 3.3E-58 1.1E-62 481.5 32.0 239 537-778 7-246 (247)
13 2ghi_A Transport protein; mult 100.0 3.1E-57 1.1E-61 477.6 30.1 240 536-778 16-255 (260)
14 2ixe_A Antigen peptide transpo 100.0 1.8E-56 6.1E-61 474.4 30.2 242 535-778 14-258 (271)
15 1mv5_A LMRA, multidrug resista 100.0 1.7E-57 5.9E-62 475.2 21.5 237 538-778 2-239 (243)
16 3gd7_A Fusion complex of cysti 100.0 4E-54 1.4E-58 476.3 26.2 228 535-767 17-244 (390)
17 2cbz_A Multidrug resistance-as 100.0 1.1E-53 3.8E-58 444.6 25.0 226 538-780 4-232 (237)
18 2pze_A Cystic fibrosis transme 100.0 3.8E-53 1.3E-57 438.4 28.0 222 536-774 5-227 (229)
19 3gfo_A Cobalt import ATP-bindi 100.0 1.8E-50 6.1E-55 428.5 23.8 221 537-770 7-238 (275)
20 3tif_A Uncharacterized ABC tra 100.0 1.7E-50 5.8E-55 420.1 21.2 217 538-764 2-233 (235)
21 3tui_C Methionine import ATP-b 100.0 8.3E-50 2.8E-54 436.1 26.1 221 536-767 23-255 (366)
22 1ji0_A ABC transporter; ATP bi 100.0 1.8E-49 6E-54 413.8 26.5 220 537-766 6-229 (240)
23 4g1u_C Hemin import ATP-bindin 100.0 4.4E-49 1.5E-53 416.5 25.0 216 537-766 11-238 (266)
24 2olj_A Amino acid ABC transpor 100.0 7.3E-49 2.5E-53 413.7 26.3 217 537-767 24-250 (263)
25 2bbs_A Cystic fibrosis transme 100.0 4.4E-49 1.5E-53 420.9 23.1 216 536-773 39-255 (290)
26 1vpl_A ABC transporter, ATP-bi 100.0 1.5E-48 5.2E-53 409.9 25.2 216 536-766 14-236 (256)
27 3fvq_A Fe(3+) IONS import ATP- 100.0 2.1E-48 7.2E-53 424.9 26.5 217 537-767 4-230 (359)
28 2yz2_A Putative ABC transporte 100.0 2.4E-48 8.4E-53 411.2 25.7 216 538-767 3-229 (266)
29 1b0u_A Histidine permease; ABC 100.0 3.1E-48 1E-52 409.4 25.6 218 537-767 6-244 (262)
30 2pcj_A ABC transporter, lipopr 100.0 1.7E-48 5.8E-53 402.2 23.0 208 538-759 5-222 (224)
31 3rlf_A Maltose/maltodextrin im 100.0 2.6E-48 8.8E-53 426.9 25.1 215 537-767 3-225 (381)
32 1g6h_A High-affinity branched- 100.0 6.3E-48 2.1E-52 406.2 24.6 212 537-762 7-239 (257)
33 2yyz_A Sugar ABC transporter, 100.0 1.1E-47 3.8E-52 420.4 26.8 214 538-767 4-225 (359)
34 1z47_A CYSA, putative ABC-tran 100.0 1.1E-47 3.7E-52 419.5 25.6 217 536-767 13-237 (355)
35 2it1_A 362AA long hypothetical 100.0 9E-48 3.1E-52 421.5 24.8 214 538-767 4-225 (362)
36 2ihy_A ABC transporter, ATP-bi 100.0 4.9E-48 1.7E-52 411.0 20.8 216 537-766 21-253 (279)
37 2onk_A Molybdate/tungstate ABC 100.0 1.1E-47 3.8E-52 399.7 22.6 211 538-767 2-218 (240)
38 1oxx_K GLCV, glucose, ABC tran 100.0 1E-47 3.4E-52 420.8 23.3 216 538-767 4-232 (353)
39 1v43_A Sugar-binding transport 100.0 3E-47 1E-51 418.8 27.2 215 537-767 11-233 (372)
40 2qi9_C Vitamin B12 import ATP- 100.0 1.8E-47 6.1E-52 400.1 24.1 208 538-765 5-222 (249)
41 3d31_A Sulfate/molybdate ABC t 100.0 2.5E-47 8.7E-52 416.2 24.9 213 538-767 2-219 (348)
42 2d2e_A SUFC protein; ABC-ATPas 100.0 2E-47 6.7E-52 400.8 21.8 211 538-762 4-230 (250)
43 1g29_1 MALK, maltose transport 100.0 5E-47 1.7E-51 417.8 24.3 214 538-767 4-231 (372)
44 2zu0_C Probable ATP-dependent 100.0 1.4E-46 4.9E-51 397.8 22.5 215 537-765 20-254 (267)
45 2pjz_A Hypothetical protein ST 100.0 2.6E-46 8.9E-51 394.2 21.0 210 538-766 2-216 (263)
46 2nq2_C Hypothetical ABC transp 100.0 5.9E-46 2E-50 389.9 21.5 202 538-766 5-218 (253)
47 1sgw_A Putative ABC transporte 100.0 6E-45 2E-49 372.3 15.5 198 537-755 10-211 (214)
48 2v9p_A Replication protein E1; 100.0 2.3E-44 7.8E-49 385.4 -18.2 238 428-779 38-277 (305)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 5E-36 1.7E-40 346.4 14.8 200 537-765 287-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.3E-35 4.4E-40 342.3 18.0 201 537-764 269-476 (538)
51 3bk7_A ABC transporter ATP-bin 100.0 7.4E-36 2.5E-40 348.6 16.1 200 537-765 357-563 (607)
52 2iw3_A Elongation factor 3A; a 100.0 8.1E-36 2.8E-40 359.4 15.9 198 537-759 671-981 (986)
53 3j16_B RLI1P; ribosome recycli 100.0 9.9E-35 3.4E-39 338.5 15.4 200 541-766 350-560 (608)
54 3ux8_A Excinuclease ABC, A sub 100.0 1.7E-34 5.7E-39 343.4 14.5 217 542-771 325-646 (670)
55 3bk7_A ABC transporter ATP-bin 100.0 1E-34 3.5E-39 339.0 12.2 193 541-752 95-304 (607)
56 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-34 4.5E-39 334.6 10.7 196 538-752 21-234 (538)
57 3ux8_A Excinuclease ABC, A sub 100.0 3.9E-34 1.3E-38 340.2 14.7 209 552-769 30-302 (670)
58 2iw3_A Elongation factor 3A; a 100.0 9.5E-33 3.3E-37 332.8 26.2 198 536-766 434-636 (986)
59 3pih_A Uvrabc system protein A 100.0 2.1E-33 7.2E-38 338.3 19.3 209 554-774 598-911 (916)
60 3j16_B RLI1P; ribosome recycli 100.0 4E-32 1.4E-36 316.6 14.5 196 542-754 82-299 (608)
61 3ozx_A RNAse L inhibitor; ATP 100.0 1.7E-32 5.8E-37 316.3 10.1 192 542-753 4-214 (538)
62 2vf7_A UVRA2, excinuclease ABC 100.0 1.4E-31 4.7E-36 320.1 16.2 219 536-772 501-834 (842)
63 4aby_A DNA repair protein RECN 100.0 3.2E-31 1.1E-35 297.5 15.9 200 555-757 50-380 (415)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.6E-34 5.3E-39 327.0 -14.2 193 537-765 118-338 (460)
65 2r6f_A Excinuclease ABC subuni 100.0 4.8E-30 1.7E-34 306.9 19.9 216 537-773 629-950 (972)
66 2ygr_A Uvrabc system protein A 100.0 1.5E-29 5.1E-34 303.7 19.8 217 537-774 647-969 (993)
67 1e69_A Chromosome segregation 100.0 1.4E-28 4.6E-33 267.3 13.8 215 537-762 5-310 (322)
68 1z6g_A Guanylate kinase; struc 99.9 2E-30 6.9E-35 266.1 -12.3 166 554-751 11-193 (218)
69 3b85_A Phosphate starvation-in 99.9 1.8E-29 6E-34 256.9 -6.9 159 553-754 13-172 (208)
70 2pt7_A CAG-ALFA; ATPase, prote 99.9 6.9E-28 2.4E-32 262.2 -3.9 141 540-754 151-292 (330)
71 4gp7_A Metallophosphoesterase; 99.9 1.6E-26 5.5E-31 227.9 3.0 149 558-746 1-168 (171)
72 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1E-24 3.5E-29 240.6 16.4 82 675-756 276-364 (365)
73 1ye8_A Protein THEP1, hypothet 99.9 3.7E-26 1.3E-30 226.9 3.7 147 568-756 2-159 (178)
74 2dpy_A FLII, flagellum-specifi 99.9 1.2E-27 4E-32 269.4 -9.0 195 536-765 130-344 (438)
75 2eyu_A Twitching motility prot 99.9 6.6E-28 2.3E-32 253.8 -20.5 185 538-738 6-241 (261)
76 1tq4_A IIGP1, interferon-induc 99.9 4E-26 1.4E-30 254.0 -8.9 168 553-747 36-248 (413)
77 2f1r_A Molybdopterin-guanine d 99.9 8.6E-26 2.9E-30 222.5 -7.9 111 567-700 3-125 (171)
78 2vf7_A UVRA2, excinuclease ABC 99.9 2.6E-23 8.9E-28 248.8 10.6 96 672-767 373-477 (842)
79 2ewv_A Twitching motility prot 99.9 2.1E-26 7.3E-31 254.5 -16.3 177 554-739 126-353 (372)
80 3aez_A Pantothenate kinase; tr 99.9 5.2E-25 1.8E-29 237.5 -8.3 175 535-752 41-245 (312)
81 1lvg_A Guanylate kinase, GMP k 99.9 1.1E-25 3.9E-30 227.2 -14.0 169 563-765 1-183 (198)
82 3sop_A Neuronal-specific septi 99.9 3.2E-24 1.1E-28 226.8 -3.6 149 568-741 4-154 (270)
83 3b9q_A Chloroplast SRP recepto 99.9 2.5E-23 8.4E-28 223.4 -0.3 176 556-755 90-285 (302)
84 2o5v_A DNA replication and rep 99.9 1.3E-21 4.3E-26 214.4 12.4 82 678-764 265-355 (359)
85 2og2_A Putative signal recogni 99.8 2.3E-22 8E-27 219.9 0.2 175 557-755 148-342 (359)
86 2i3b_A HCR-ntpase, human cance 99.8 4.9E-23 1.7E-27 206.2 -6.1 159 566-758 1-169 (189)
87 1znw_A Guanylate kinase, GMP k 99.8 1.1E-22 3.7E-27 206.5 -4.0 170 553-750 9-202 (207)
88 2gza_A Type IV secretion syste 99.8 6E-25 2.1E-29 242.1 -22.6 150 539-693 137-302 (361)
89 2obl_A ESCN; ATPase, hydrolase 99.8 6.4E-22 2.2E-26 216.2 -0.2 193 537-763 45-253 (347)
90 3pih_A Uvrabc system protein A 99.8 1.1E-20 3.7E-25 228.0 7.5 167 584-767 386-562 (916)
91 1lw7_A Transcriptional regulat 99.8 2.9E-22 9.8E-27 221.2 -6.2 147 556-706 158-329 (365)
92 3asz_A Uridine kinase; cytidin 99.8 1.2E-22 4E-27 206.3 -9.4 145 563-737 3-161 (211)
93 1cr0_A DNA primase/helicase; R 99.8 2.7E-20 9.1E-25 199.3 5.7 181 554-754 23-237 (296)
94 4ad8_A DNA repair protein RECN 99.8 2.5E-19 8.4E-24 206.7 13.2 76 677-752 395-473 (517)
95 2jeo_A Uridine-cytidine kinase 99.8 3.7E-21 1.3E-25 200.4 -1.9 170 552-766 11-188 (245)
96 1tf7_A KAIC; homohexamer, hexa 99.8 1.9E-21 6.6E-26 224.7 -6.4 167 552-752 24-210 (525)
97 3qkt_A DNA double-strand break 99.8 4.7E-18 1.6E-22 185.6 17.5 78 677-754 247-333 (339)
98 2r6f_A Excinuclease ABC subuni 99.8 3.6E-19 1.2E-23 213.4 9.2 150 590-766 432-601 (972)
99 1tf7_A KAIC; homohexamer, hexa 99.8 2E-19 6.9E-24 207.8 4.8 169 538-753 258-444 (525)
100 2o8b_B DNA mismatch repair pro 99.8 4E-19 1.4E-23 217.9 7.1 171 536-761 749-938 (1022)
101 1pzn_A RAD51, DNA repair and r 99.7 9.5E-20 3.3E-24 199.6 0.7 166 555-764 119-314 (349)
102 1w1w_A Structural maintenance 99.7 5E-18 1.7E-22 191.4 14.3 73 678-750 333-410 (430)
103 2ygr_A Uvrabc system protein A 99.7 6E-18 2.1E-22 203.5 15.0 133 625-766 466-618 (993)
104 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 5.1E-18 1.7E-22 162.8 11.0 88 667-754 41-142 (148)
105 4a74_A DNA repair and recombin 99.7 7.6E-19 2.6E-23 179.8 4.6 148 562-753 21-201 (231)
106 1ewq_A DNA mismatch repair pro 99.7 2.1E-18 7.2E-23 205.6 9.0 147 535-743 548-704 (765)
107 1odf_A YGR205W, hypothetical 3 99.7 2.2E-20 7.4E-25 199.4 -7.3 131 565-713 30-169 (290)
108 3szr_A Interferon-induced GTP- 99.7 8.7E-20 3E-24 213.8 -5.8 190 537-764 10-236 (608)
109 1pui_A ENGB, probable GTP-bind 99.7 1.9E-19 6.6E-24 181.6 -3.8 169 538-725 4-197 (210)
110 2qag_C Septin-7; cell cycle, c 99.7 7.3E-19 2.5E-23 196.2 -0.4 166 536-740 10-180 (418)
111 1rj9_A FTSY, signal recognitio 99.7 2.8E-18 9.5E-23 184.2 3.5 149 565-739 101-260 (304)
112 3thx_A DNA mismatch repair pro 99.7 1.7E-17 5.8E-22 201.1 10.6 167 536-763 630-811 (934)
113 2ehv_A Hypothetical protein PH 99.7 8E-19 2.7E-23 182.0 -1.7 181 538-751 7-207 (251)
114 3jvv_A Twitching mobility prot 99.7 4.1E-18 1.4E-22 186.7 3.3 147 541-752 92-246 (356)
115 3kta_B Chromosome segregation 99.7 7.1E-17 2.4E-21 158.9 11.5 79 676-754 62-146 (173)
116 2qnr_A Septin-2, protein NEDD5 99.6 5.8E-18 2E-22 181.8 -2.5 162 541-738 2-168 (301)
117 3c8u_A Fructokinase; YP_612366 99.6 8.9E-20 3E-24 185.2 -15.8 150 563-737 19-183 (208)
118 1s96_A Guanylate kinase, GMP k 99.6 1.6E-17 5.5E-22 170.0 0.2 145 560-766 10-161 (219)
119 1nij_A Hypothetical protein YJ 99.6 8E-18 2.7E-22 182.1 -4.7 149 567-737 5-189 (318)
120 2w0m_A SSO2452; RECA, SSPF, un 99.6 2.3E-16 7.8E-21 161.3 4.7 165 553-753 9-193 (235)
121 1zp6_A Hypothetical protein AT 99.6 2.1E-17 7.2E-22 164.5 -3.8 161 562-746 5-169 (191)
122 2qag_B Septin-6, protein NEDD5 99.6 5.1E-16 1.7E-20 172.6 4.1 179 537-735 16-217 (427)
123 2cvh_A DNA repair and recombin 99.6 3.7E-15 1.3E-19 151.2 10.1 150 554-752 7-185 (220)
124 3thx_B DNA mismatch repair pro 99.6 1.8E-15 6.1E-20 183.0 7.2 159 537-746 640-805 (918)
125 1nlf_A Regulatory protein REPA 99.6 4.9E-15 1.7E-19 157.0 9.3 151 562-740 26-184 (279)
126 1wb9_A DNA mismatch repair pro 99.5 2.4E-15 8.3E-20 180.3 5.5 151 552-756 594-749 (800)
127 1n0w_A DNA repair protein RAD5 99.5 7.6E-15 2.6E-19 151.3 7.9 148 562-752 20-209 (243)
128 2qm8_A GTPase/ATPase; G protei 99.5 1.1E-16 3.6E-21 174.6 -10.9 181 538-725 30-259 (337)
129 2yhs_A FTSY, cell division pro 99.5 2.1E-14 7.3E-19 161.5 6.4 155 556-735 283-447 (503)
130 1htw_A HI0065; nucleotide-bind 99.4 7.5E-16 2.5E-20 149.5 -7.2 89 540-637 10-99 (158)
131 3auy_A DNA double-strand break 99.4 2.8E-13 9.7E-18 149.5 10.9 77 677-753 279-363 (371)
132 1p9r_A General secretion pathw 99.4 5.2E-16 1.8E-20 173.3 -11.2 144 538-701 144-314 (418)
133 2oap_1 GSPE-2, type II secreti 99.4 7.1E-16 2.4E-20 176.6 -11.8 176 553-744 247-458 (511)
134 2bdt_A BH3686; alpha-beta prot 99.4 1.4E-16 4.8E-21 158.6 -16.2 170 566-764 2-183 (189)
135 1sxj_E Activator 1 40 kDa subu 99.4 1.3E-13 4.5E-18 150.5 5.3 137 568-739 38-176 (354)
136 3e70_C DPA, signal recognition 99.4 2.9E-13 1E-17 146.5 6.6 166 562-755 125-307 (328)
137 2bbw_A Adenylate kinase 4, AK4 99.4 1.5E-14 5E-19 150.4 -5.1 167 565-751 26-218 (246)
138 2rcn_A Probable GTPase ENGC; Y 99.4 5.3E-13 1.8E-17 145.5 6.8 122 555-694 205-329 (358)
139 3lda_A DNA repair protein RAD5 99.3 1.1E-12 3.6E-17 145.7 8.1 147 562-753 174-364 (400)
140 3lnc_A Guanylate kinase, GMP k 99.3 4.3E-15 1.5E-19 152.9 -12.9 185 554-763 15-222 (231)
141 2kjq_A DNAA-related protein; s 99.3 2.5E-12 8.7E-17 123.3 6.2 91 555-736 30-124 (149)
142 1cke_A CK, MSSA, protein (cyti 99.3 6.4E-14 2.2E-18 143.2 -6.1 128 566-707 5-151 (227)
143 2x8a_A Nuclear valosin-contain 99.2 2.3E-14 7.7E-19 151.7 -12.0 144 553-721 33-190 (274)
144 2yv5_A YJEQ protein; hydrolase 99.2 2.1E-12 7.1E-17 138.5 1.8 118 561-691 160-300 (302)
145 3ec2_A DNA replication protein 99.2 1.7E-11 5.7E-16 120.8 7.2 111 560-738 32-144 (180)
146 4e22_A Cytidylate kinase; P-lo 99.2 2.3E-12 8E-17 134.5 -1.0 111 554-676 18-146 (252)
147 1udx_A The GTP-binding protein 99.1 8.3E-12 2.8E-16 139.2 2.7 156 556-735 147-306 (416)
148 3tr0_A Guanylate kinase, GMP k 99.1 1.2E-11 4.1E-16 124.0 3.3 156 560-723 1-186 (205)
149 1sq5_A Pantothenate kinase; P- 99.1 1.4E-12 4.8E-17 140.3 -5.1 139 535-710 35-198 (308)
150 1ls1_A Signal recognition part 99.1 9.4E-11 3.2E-15 125.2 7.5 142 538-734 77-219 (295)
151 3a00_A Guanylate kinase, GMP k 99.1 2E-11 6.8E-16 121.2 1.4 128 566-704 1-169 (186)
152 1u0l_A Probable GTPase ENGC; p 99.1 2.5E-11 8.5E-16 130.1 1.6 105 561-666 164-290 (301)
153 1vma_A Cell division protein F 99.0 3E-10 1E-14 121.7 8.6 98 559-707 97-197 (306)
154 3euj_A Chromosome partition pr 99.0 1.1E-10 3.7E-15 132.0 4.7 65 539-609 8-72 (483)
155 2px0_A Flagellar biosynthesis 99.0 3.4E-10 1.2E-14 120.8 8.3 139 564-757 103-247 (296)
156 1iy2_A ATP-dependent metallopr 98.9 1.5E-12 5E-17 137.8 -13.9 139 539-706 51-195 (278)
157 3ney_A 55 kDa erythrocyte memb 98.9 1.4E-10 4.9E-15 116.0 1.1 81 561-652 14-107 (197)
158 1ixz_A ATP-dependent metallopr 98.9 3.2E-12 1.1E-16 133.1 -13.2 140 539-707 27-172 (254)
159 1in4_A RUVB, holliday junction 98.9 1.7E-12 5.7E-17 141.3 -16.1 94 538-635 19-123 (334)
160 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 1.1E-11 3.8E-16 136.9 -9.7 168 562-759 16-207 (392)
161 2ius_A DNA translocase FTSK; n 98.9 1E-10 3.5E-15 133.0 -2.7 158 558-738 159-343 (512)
162 1t9h_A YLOQ, probable GTPase E 98.8 4.8E-10 1.6E-14 120.0 1.5 98 561-660 168-288 (307)
163 1kgd_A CASK, peripheral plasma 98.8 2.8E-10 9.7E-15 112.2 -0.6 80 565-653 4-94 (180)
164 1oix_A RAS-related protein RAB 98.8 5.4E-10 1.8E-14 111.0 0.0 141 568-723 31-188 (191)
165 1qhl_A Protein (cell division 98.8 2E-10 6.7E-15 117.7 -3.9 75 537-622 9-91 (227)
166 2zr9_A Protein RECA, recombina 98.8 1.7E-08 5.9E-13 110.1 10.8 143 562-759 57-237 (349)
167 2dr3_A UPF0273 protein PH0284; 98.8 2.2E-09 7.6E-14 110.3 3.5 166 555-751 11-196 (247)
168 3k1j_A LON protease, ATP-depen 98.8 5.6E-10 1.9E-14 130.9 -1.2 158 552-723 46-227 (604)
169 2r6a_A DNAB helicase, replicat 98.7 1E-08 3.5E-13 116.0 8.2 177 554-754 191-401 (454)
170 2dy1_A Elongation factor G; tr 98.7 3.3E-09 1.1E-13 125.4 4.2 75 560-635 3-79 (665)
171 2qt1_A Nicotinamide riboside k 98.7 1.6E-09 5.4E-14 109.0 0.4 50 562-637 17-66 (207)
172 3tau_A Guanylate kinase, GMP k 98.7 5.2E-09 1.8E-13 105.7 1.9 80 564-652 6-96 (208)
173 1svm_A Large T antigen; AAA+ f 98.6 2.2E-10 7.6E-15 126.0 -9.3 137 553-707 156-312 (377)
174 2j41_A Guanylate kinase; GMP, 98.6 8E-09 2.7E-13 103.3 0.1 84 561-653 1-95 (207)
175 2f9l_A RAB11B, member RAS onco 98.5 2E-08 6.9E-13 100.0 2.6 136 568-723 7-164 (199)
176 3cr8_A Sulfate adenylyltranfer 98.5 5.8E-09 2E-13 120.2 -3.6 91 561-656 364-468 (552)
177 3t34_A Dynamin-related protein 98.5 6.1E-08 2.1E-12 106.2 4.4 58 542-602 13-72 (360)
178 2ce7_A Cell division protein F 98.4 2.1E-07 7.2E-12 105.4 8.0 114 554-740 39-167 (476)
179 3nwj_A ATSK2; P loop, shikimat 98.4 1.7E-08 5.8E-13 105.0 -1.1 53 537-591 17-73 (250)
180 3uie_A Adenylyl-sulfate kinase 98.4 5.9E-09 2E-13 104.4 -4.5 52 553-605 12-65 (200)
181 3kta_A Chromosome segregation 98.4 2.3E-08 8E-13 98.1 -0.6 99 557-658 18-136 (182)
182 2dhr_A FTSH; AAA+ protein, hex 98.4 7.8E-09 2.7E-13 117.7 -6.1 140 540-708 43-188 (499)
183 4eun_A Thermoresistant glucoki 98.4 4.3E-08 1.5E-12 98.0 0.0 58 561-624 24-82 (200)
184 2qtf_A Protein HFLX, GTP-bindi 98.3 2E-07 6.8E-12 102.3 4.4 141 568-725 181-352 (364)
185 3vaa_A Shikimate kinase, SK; s 98.3 1.9E-07 6.4E-12 93.3 3.7 45 546-590 5-49 (199)
186 1zu4_A FTSY; GTPase, signal re 98.3 1.2E-07 4E-12 102.2 1.8 69 555-623 94-172 (320)
187 3ice_A Transcription terminati 98.2 1.9E-07 6.3E-12 101.6 1.2 55 534-590 130-198 (422)
188 2z43_A DNA repair and recombin 98.2 9E-07 3.1E-11 95.5 5.4 29 562-590 103-131 (324)
189 1jjv_A Dephospho-COA kinase; P 98.2 4.7E-07 1.6E-11 90.6 2.8 70 679-751 60-132 (206)
190 2ffh_A Protein (FFH); SRP54, s 98.2 1.2E-06 4.2E-11 97.6 6.4 163 540-735 79-246 (425)
191 1uf9_A TT1252 protein; P-loop, 98.2 1.5E-08 5E-13 101.1 -8.5 82 566-661 8-93 (203)
192 3hr8_A Protein RECA; alpha and 98.2 2.7E-06 9.3E-11 92.7 8.5 60 562-624 57-117 (356)
193 2xau_A PRE-mRNA-splicing facto 98.1 3.2E-06 1.1E-10 101.6 8.7 64 678-741 190-256 (773)
194 2vp4_A Deoxynucleoside kinase; 98.1 1.2E-07 4.2E-12 97.0 -3.4 63 561-627 15-87 (230)
195 2e87_A Hypothetical protein PH 98.1 6.2E-06 2.1E-10 90.1 9.3 61 677-738 230-293 (357)
196 2eyu_A Twitching motility prot 98.1 1.2E-06 4.2E-11 91.6 2.7 59 686-750 88-146 (261)
197 3m6a_A ATP-dependent protease 97.9 1.6E-06 5.3E-11 100.3 1.2 59 540-602 86-144 (543)
198 4a1f_A DNAB helicase, replicat 97.9 2E-05 6.9E-10 85.2 8.6 105 555-710 35-141 (338)
199 1knq_A Gluconate kinase; ALFA/ 97.9 2.7E-06 9.4E-11 82.6 1.4 38 564-605 6-43 (175)
200 1fnn_A CDC6P, cell division co 97.9 1.9E-05 6.4E-10 86.4 8.2 45 695-740 124-172 (389)
201 1rz3_A Hypothetical protein rb 97.9 2.8E-06 9.4E-11 85.0 1.3 47 563-609 19-65 (201)
202 3kl4_A SRP54, signal recogniti 97.8 1.9E-05 6.4E-10 88.1 6.6 40 565-604 96-135 (433)
203 3b9p_A CG5977-PA, isoform A; A 97.8 9.1E-05 3.1E-09 78.1 11.0 71 680-750 97-187 (297)
204 1v5w_A DMC1, meiotic recombina 97.7 1.3E-05 4.4E-10 87.2 4.2 28 562-589 118-145 (343)
205 3tqc_A Pantothenate kinase; bi 97.7 3.8E-06 1.3E-10 90.2 -0.1 132 543-710 66-210 (321)
206 2pez_A Bifunctional 3'-phospho 97.7 3.7E-06 1.3E-10 82.1 -0.7 41 564-605 3-45 (179)
207 3r20_A Cytidylate kinase; stru 97.7 7E-06 2.4E-10 84.2 1.2 70 566-635 9-96 (233)
208 2qor_A Guanylate kinase; phosp 97.7 3.9E-06 1.3E-10 84.0 -1.6 72 562-637 8-90 (204)
209 3lxx_A GTPase IMAP family memb 97.6 0.00033 1.1E-08 71.5 11.8 29 568-596 31-59 (239)
210 1ega_A Protein (GTP-binding pr 97.5 3.5E-05 1.2E-09 82.1 3.8 143 566-740 8-162 (301)
211 1ypw_A Transitional endoplasmi 97.5 1.7E-05 5.9E-10 95.7 0.8 32 561-592 233-264 (806)
212 1sxj_C Activator 1 40 kDa subu 97.5 1.3E-05 4.6E-10 86.6 -0.3 43 553-595 31-75 (340)
213 2z4s_A Chromosomal replication 97.5 0.0001 3.6E-09 82.7 6.5 64 696-759 194-262 (440)
214 1mky_A Probable GTP-binding pr 97.5 5.7E-05 1.9E-09 84.8 4.2 70 567-636 181-263 (439)
215 1m7g_A Adenylylsulfate kinase; 97.5 1.7E-05 5.7E-10 79.8 -0.1 44 561-604 20-65 (211)
216 1f6b_A SAR1; gtpases, N-termin 97.4 2.7E-05 9.3E-10 77.2 1.1 57 544-603 6-70 (198)
217 4eaq_A DTMP kinase, thymidylat 97.4 4E-05 1.4E-09 78.3 2.2 44 556-600 13-59 (229)
218 1kag_A SKI, shikimate kinase I 97.4 5.9E-05 2E-09 72.7 2.8 33 565-601 3-35 (173)
219 1u94_A RECA protein, recombina 97.4 0.00057 1.9E-08 74.4 10.8 47 554-601 49-99 (356)
220 3bh0_A DNAB-like replicative h 97.4 0.0003 1E-08 75.3 8.3 36 554-589 56-91 (315)
221 2qby_A CDC6 homolog 1, cell di 97.4 3.5E-05 1.2E-09 83.8 0.8 31 564-594 43-73 (386)
222 1lv7_A FTSH; alpha/beta domain 97.3 0.00019 6.6E-09 74.0 6.3 46 555-604 36-81 (257)
223 2p67_A LAO/AO transport system 97.3 2.7E-05 9.4E-10 84.4 -0.9 52 554-605 44-95 (341)
224 2jaq_A Deoxyguanosine kinase; 97.3 1.3E-05 4.5E-10 79.4 -3.4 70 568-637 2-87 (205)
225 1l8q_A Chromosomal replication 97.2 0.00021 7E-09 76.6 5.3 28 565-592 36-63 (324)
226 1m2o_B GTP-binding protein SAR 97.2 0.00018 6.2E-09 70.6 4.3 47 555-602 13-67 (190)
227 3llm_A ATP-dependent RNA helic 97.2 0.00036 1.2E-08 71.2 6.4 132 563-732 73-213 (235)
228 2www_A Methylmalonic aciduria 97.2 9.7E-05 3.3E-09 80.4 1.6 43 564-606 72-114 (349)
229 2gj8_A MNME, tRNA modification 97.1 0.00026 9.1E-09 68.3 4.3 27 564-590 2-28 (172)
230 3bos_A Putative DNA replicatio 97.1 0.00027 9.3E-09 71.3 4.4 28 565-592 51-78 (242)
231 3h4m_A Proteasome-activating n 97.1 0.00098 3.3E-08 69.6 8.3 28 563-590 48-75 (285)
232 2w58_A DNAI, primosome compone 97.1 0.00038 1.3E-08 68.9 4.8 26 567-592 55-80 (202)
233 4fcw_A Chaperone protein CLPB; 97.0 0.002 6.7E-08 68.1 10.0 31 566-596 47-77 (311)
234 1y63_A LMAJ004144AAA protein; 97.0 0.00033 1.1E-08 68.6 3.2 32 558-589 2-33 (184)
235 3cf0_A Transitional endoplasmi 97.0 0.0012 4.2E-08 69.9 7.8 38 561-600 44-81 (301)
236 2qag_A Septin-2, protein NEDD5 96.9 0.00011 3.6E-09 80.5 -1.0 59 534-601 14-72 (361)
237 4dcu_A GTP-binding protein ENG 96.9 0.0013 4.4E-08 74.1 7.8 57 681-740 87-144 (456)
238 2i1q_A DNA repair and recombin 96.9 0.0006 2.1E-08 73.0 4.5 27 562-588 94-120 (322)
239 1j8m_F SRP54, signal recogniti 96.8 0.00015 5.2E-09 77.0 -0.4 50 557-607 89-139 (297)
240 2p5t_B PEZT; postsegregational 96.8 0.0003 1E-08 72.7 1.2 42 562-605 28-69 (253)
241 1ex7_A Guanylate kinase; subst 96.8 0.00041 1.4E-08 68.4 2.1 74 569-653 4-90 (186)
242 1njg_A DNA polymerase III subu 96.8 0.00041 1.4E-08 69.4 2.1 44 695-739 125-168 (250)
243 2yvu_A Probable adenylyl-sulfa 96.8 0.00043 1.5E-08 67.6 2.2 40 562-601 9-49 (186)
244 1sxj_D Activator 1 41 kDa subu 96.8 0.00023 7.7E-09 76.7 0.1 42 696-738 133-174 (353)
245 3t61_A Gluconokinase; PSI-biol 96.7 0.00034 1.2E-08 69.4 1.3 34 566-603 18-51 (202)
246 3uk6_A RUVB-like 2; hexameric 96.7 0.0019 6.7E-08 69.9 6.9 39 564-602 68-106 (368)
247 3n70_A Transport activator; si 96.7 0.0047 1.6E-07 57.8 8.7 28 565-592 23-50 (145)
248 2wji_A Ferrous iron transport 96.7 0.0015 5E-08 62.3 5.2 25 567-591 4-28 (165)
249 1np6_A Molybdopterin-guanine d 96.7 0.00069 2.4E-08 66.1 2.8 38 566-603 6-46 (174)
250 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.001 3.5E-08 63.1 3.9 32 559-591 17-49 (149)
251 1xp8_A RECA protein, recombina 96.6 0.0049 1.7E-07 67.3 9.7 29 562-590 70-98 (366)
252 2wjg_A FEOB, ferrous iron tran 96.6 0.0011 3.8E-08 64.2 3.6 22 568-589 9-30 (188)
253 2q6t_A DNAB replication FORK h 96.6 0.0023 7.8E-08 71.8 6.7 37 555-591 189-225 (444)
254 2ohf_A Protein OLA1, GTP-bindi 96.6 0.001 3.5E-08 73.2 3.7 41 562-602 18-69 (396)
255 3lxw_A GTPase IMAP family memb 96.5 0.0078 2.7E-07 61.8 9.9 59 680-739 86-151 (247)
256 1lw7_A Transcriptional regulat 96.5 3E-05 1E-09 84.9 -9.1 86 678-765 258-355 (365)
257 2dby_A GTP-binding protein; GD 96.4 0.0009 3.1E-08 73.1 1.9 59 568-659 3-61 (368)
258 3ihw_A Centg3; RAS, centaurin, 96.4 0.003 1E-07 61.5 5.3 36 568-603 22-66 (184)
259 2zej_A Dardarin, leucine-rich 96.4 0.0017 5.7E-08 63.1 3.3 26 568-593 4-29 (184)
260 2if2_A Dephospho-COA kinase; a 96.3 0.0016 5.6E-08 64.4 3.3 21 568-588 3-23 (204)
261 3d8b_A Fidgetin-like protein 1 96.3 0.0082 2.8E-07 65.2 9.1 27 564-590 115-141 (357)
262 1qhx_A CPT, protein (chloramph 96.3 0.002 6.8E-08 62.1 3.7 26 566-591 3-28 (178)
263 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.012 4.2E-07 60.1 9.8 27 564-590 37-63 (262)
264 1gtv_A TMK, thymidylate kinase 96.3 0.00061 2.1E-08 67.8 -0.2 89 568-677 2-97 (214)
265 3qf4_B Uncharacterized ABC tra 96.2 2.2 7.5E-05 49.3 29.6 30 228-257 87-116 (598)
266 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.006 2.1E-07 65.0 7.0 29 561-589 118-146 (331)
267 3syl_A Protein CBBX; photosynt 96.2 0.028 9.5E-07 59.1 12.3 27 565-591 66-92 (309)
268 3cm0_A Adenylate kinase; ATP-b 96.2 0.002 6.7E-08 62.7 3.0 27 564-590 2-28 (186)
269 2ewv_A Twitching motility prot 96.2 0.0017 5.8E-08 71.1 2.6 57 686-748 199-255 (372)
270 3kb2_A SPBC2 prophage-derived 96.2 0.0024 8.2E-08 60.9 3.3 24 568-591 3-26 (173)
271 2v1u_A Cell division control p 96.2 0.0023 7.7E-08 69.4 3.4 28 564-591 42-69 (387)
272 1ko7_A HPR kinase/phosphatase; 96.1 0.0027 9.4E-08 67.5 3.7 46 554-600 133-182 (314)
273 2v54_A DTMP kinase, thymidylat 96.1 0.0033 1.1E-07 61.9 3.9 26 565-590 3-28 (204)
274 4ag6_A VIRB4 ATPase, type IV s 96.1 0.0025 8.6E-08 70.1 3.3 58 695-752 261-335 (392)
275 2ga8_A Hypothetical 39.9 kDa p 96.1 0.00089 3.1E-08 72.4 -0.4 37 554-590 10-48 (359)
276 1kht_A Adenylate kinase; phosp 96.1 0.0032 1.1E-07 61.1 3.6 27 565-591 2-28 (192)
277 2chg_A Replication factor C sm 96.0 0.016 5.6E-07 56.8 8.8 43 695-738 101-143 (226)
278 3trf_A Shikimate kinase, SK; a 96.0 0.0032 1.1E-07 61.1 3.5 26 565-590 4-29 (185)
279 1gvn_B Zeta; postsegregational 96.0 0.0033 1.1E-07 66.3 3.8 35 565-601 32-66 (287)
280 3cmw_A Protein RECA, recombina 95.9 0.029 1E-06 71.8 12.4 40 563-602 729-769 (1706)
281 3dm5_A SRP54, signal recogniti 95.9 0.024 8.2E-07 63.2 10.2 35 565-599 99-133 (443)
282 1fzq_A ADP-ribosylation factor 95.9 0.0033 1.1E-07 60.9 2.9 29 567-595 17-49 (181)
283 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.029 9.8E-07 60.0 10.4 27 564-590 43-69 (322)
284 2rhm_A Putative kinase; P-loop 95.9 0.0034 1.2E-07 61.2 2.9 27 564-590 3-29 (193)
285 1vht_A Dephospho-COA kinase; s 95.9 0.0045 1.5E-07 61.9 3.8 32 565-601 3-34 (218)
286 3lw7_A Adenylate kinase relate 95.9 0.004 1.4E-07 59.2 3.2 19 568-586 3-21 (179)
287 3b60_A Lipid A export ATP-bind 95.8 3.7 0.00013 47.2 35.5 97 161-258 8-105 (582)
288 1jal_A YCHF protein; nucleotid 95.8 0.0066 2.3E-07 66.0 5.1 36 566-601 2-48 (363)
289 3zvl_A Bifunctional polynucleo 95.8 0.034 1.2E-06 61.7 11.0 29 562-590 254-282 (416)
290 3qks_A DNA double-strand break 95.8 0.0051 1.7E-07 61.3 3.9 28 559-587 17-44 (203)
291 1xjc_A MOBB protein homolog; s 95.8 0.0032 1.1E-07 61.0 2.3 36 567-602 5-43 (169)
292 1q3t_A Cytidylate kinase; nucl 95.8 0.0047 1.6E-07 62.8 3.6 28 563-590 13-40 (236)
293 2b8t_A Thymidine kinase; deoxy 95.8 0.0097 3.3E-07 60.3 5.8 51 696-750 89-150 (223)
294 2wwf_A Thymidilate kinase, put 95.7 0.0049 1.7E-07 61.0 3.4 27 564-590 8-34 (212)
295 3t15_A Ribulose bisphosphate c 95.7 0.01 3.6E-07 62.5 5.9 25 566-590 36-60 (293)
296 3b5x_A Lipid A export ATP-bind 95.7 4.2 0.00014 46.7 37.7 12 554-565 342-353 (582)
297 2c95_A Adenylate kinase 1; tra 95.7 0.0049 1.7E-07 60.2 3.1 27 564-590 7-33 (196)
298 2plr_A DTMP kinase, probable t 95.7 0.0056 1.9E-07 60.4 3.5 28 565-592 3-30 (213)
299 3iij_A Coilin-interacting nucl 95.7 0.0051 1.7E-07 59.5 3.1 27 564-590 9-35 (180)
300 1nn5_A Similar to deoxythymidy 95.6 0.0054 1.9E-07 60.8 3.3 28 563-590 6-33 (215)
301 1via_A Shikimate kinase; struc 95.5 0.0058 2E-07 58.8 2.8 23 568-590 6-28 (175)
302 1ly1_A Polynucleotide kinase; 95.5 0.0069 2.4E-07 58.1 3.3 22 567-588 3-24 (181)
303 2ze6_A Isopentenyl transferase 95.5 0.0064 2.2E-07 62.7 3.2 25 567-591 2-26 (253)
304 2qp9_X Vacuolar protein sortin 95.4 0.037 1.3E-06 60.0 9.3 27 564-590 82-108 (355)
305 3co5_A Putative two-component 95.4 0.02 6.7E-07 53.4 6.1 27 565-591 26-52 (143)
306 2bwj_A Adenylate kinase 5; pho 95.4 0.0054 1.9E-07 60.0 2.3 29 563-591 9-37 (199)
307 2r62_A Cell division protease 95.4 0.0044 1.5E-07 64.0 1.7 33 556-590 36-68 (268)
308 2vli_A Antibiotic resistance p 95.4 0.0053 1.8E-07 59.3 2.2 28 564-591 3-30 (183)
309 1tev_A UMP-CMP kinase; ploop, 95.4 0.0079 2.7E-07 58.4 3.4 25 566-590 3-27 (196)
310 2fn4_A P23, RAS-related protei 95.3 0.015 5E-07 55.3 5.0 22 568-589 11-32 (181)
311 4a82_A Cystic fibrosis transme 95.3 2.8 9.4E-05 48.3 25.2 8 556-563 342-349 (578)
312 2r8r_A Sensor protein; KDPD, P 95.3 0.015 5.1E-07 58.8 5.1 43 693-735 81-125 (228)
313 2lkc_A Translation initiation 95.3 0.02 6.9E-07 54.4 5.9 25 565-589 7-31 (178)
314 2erx_A GTP-binding protein DI- 95.3 0.015 5.3E-07 54.6 5.0 21 568-588 5-25 (172)
315 2qby_B CDC6 homolog 3, cell di 95.3 0.0098 3.4E-07 64.5 4.1 25 566-590 45-69 (384)
316 1nks_A Adenylate kinase; therm 95.3 0.008 2.7E-07 58.3 3.0 24 568-591 3-26 (194)
317 3qf4_A ABC transporter, ATP-bi 95.3 5.8 0.0002 45.6 30.8 10 539-548 358-367 (587)
318 1aky_A Adenylate kinase; ATP:A 95.2 0.01 3.5E-07 59.4 3.7 28 564-591 2-29 (220)
319 3cbq_A GTP-binding protein REM 95.2 0.0086 3E-07 58.8 3.1 22 568-589 25-46 (195)
320 3bgw_A DNAB-like replicative h 95.2 0.027 9.1E-07 63.1 7.4 35 555-589 186-220 (444)
321 2z0h_A DTMP kinase, thymidylat 95.1 0.01 3.5E-07 57.9 3.3 24 568-591 2-25 (197)
322 2cdn_A Adenylate kinase; phosp 95.1 0.012 4.1E-07 57.9 3.7 25 566-590 20-44 (201)
323 1zd8_A GTP:AMP phosphotransfer 95.1 0.009 3.1E-07 60.2 2.8 27 564-590 5-31 (227)
324 1ukz_A Uridylate kinase; trans 95.1 0.0094 3.2E-07 58.7 2.8 25 566-590 15-39 (203)
325 3fb4_A Adenylate kinase; psych 95.1 0.011 3.7E-07 58.9 3.3 23 568-590 2-24 (216)
326 3dl0_A Adenylate kinase; phosp 95.1 0.0096 3.3E-07 59.3 2.9 23 568-590 2-24 (216)
327 2zan_A Vacuolar protein sortin 95.0 0.082 2.8E-06 59.1 10.7 27 564-590 165-191 (444)
328 3io5_A Recombination and repai 95.0 0.026 9E-07 60.0 6.1 39 563-602 26-67 (333)
329 1zuh_A Shikimate kinase; alpha 95.0 0.013 4.4E-07 55.9 3.5 25 566-590 7-31 (168)
330 2ew1_A RAS-related protein RAB 95.0 0.02 6.9E-07 56.5 5.0 22 568-589 28-49 (201)
331 2iyv_A Shikimate kinase, SK; t 95.0 0.01 3.4E-07 57.5 2.7 24 567-590 3-26 (184)
332 1e6c_A Shikimate kinase; phosp 95.0 0.011 3.7E-07 56.4 2.9 24 567-590 3-26 (173)
333 3ake_A Cytidylate kinase; CMP 95.0 0.012 4.1E-07 58.0 3.2 23 568-590 4-26 (208)
334 2pt5_A Shikimate kinase, SK; a 94.9 0.013 4.5E-07 55.6 3.4 23 568-590 2-24 (168)
335 2grj_A Dephospho-COA kinase; T 94.9 0.013 4.3E-07 58.0 3.3 24 567-590 13-36 (192)
336 3pfi_A Holliday junction ATP-d 94.9 0.11 3.9E-06 55.2 11.2 25 567-591 56-80 (338)
337 1z0j_A RAB-22, RAS-related pro 94.9 0.018 6.3E-07 54.0 4.4 23 568-590 8-30 (170)
338 1jr3_A DNA polymerase III subu 94.9 0.044 1.5E-06 59.0 8.0 42 696-738 119-160 (373)
339 1zak_A Adenylate kinase; ATP:A 94.9 0.0082 2.8E-07 60.2 1.9 27 565-591 4-30 (222)
340 1z2a_A RAS-related protein RAB 94.9 0.013 4.5E-07 54.9 3.2 22 568-589 7-28 (168)
341 2pbr_A DTMP kinase, thymidylat 94.9 0.013 4.6E-07 56.8 3.3 23 568-590 2-24 (195)
342 1ksh_A ARF-like protein 2; sma 94.8 0.027 9.2E-07 54.1 5.3 25 565-589 17-41 (186)
343 1a7j_A Phosphoribulokinase; tr 94.8 0.0078 2.7E-07 63.5 1.4 27 565-591 4-30 (290)
344 3clv_A RAB5 protein, putative; 94.8 0.019 6.6E-07 55.5 4.2 22 568-589 9-30 (208)
345 2oil_A CATX-8, RAS-related pro 94.8 0.021 7E-07 55.4 4.4 22 568-589 27-48 (193)
346 1r2q_A RAS-related protein RAB 94.8 0.021 7.3E-07 53.5 4.4 21 568-588 8-28 (170)
347 1kao_A RAP2A; GTP-binding prot 94.7 0.016 5.3E-07 54.2 3.3 22 568-589 5-26 (167)
348 1qf9_A UMP/CMP kinase, protein 94.7 0.014 4.7E-07 56.6 3.0 25 566-590 6-30 (194)
349 2nzj_A GTP-binding protein REM 94.7 0.016 5.5E-07 54.8 3.4 23 568-590 6-28 (175)
350 3a8t_A Adenylate isopentenyltr 94.7 0.017 5.9E-07 62.0 3.9 28 564-591 38-65 (339)
351 3tlx_A Adenylate kinase 2; str 94.7 0.015 5.3E-07 59.4 3.4 26 565-590 28-53 (243)
352 2ged_A SR-beta, signal recogni 94.7 0.016 5.3E-07 56.2 3.3 26 566-591 48-73 (193)
353 3q72_A GTP-binding protein RAD 94.7 0.013 4.4E-07 55.1 2.6 23 568-590 4-26 (166)
354 2dyk_A GTP-binding protein; GT 94.7 0.017 5.7E-07 53.9 3.3 23 568-590 3-25 (161)
355 1u8z_A RAS-related protein RAL 94.7 0.016 5.6E-07 54.1 3.2 22 568-589 6-27 (168)
356 3q85_A GTP-binding protein REM 94.7 0.017 5.7E-07 54.4 3.3 23 568-590 4-26 (169)
357 1uj2_A Uridine-cytidine kinase 94.7 0.015 5.3E-07 59.6 3.3 25 567-591 23-47 (252)
358 2ce2_X GTPase HRAS; signaling 94.6 0.015 5.1E-07 54.2 2.9 22 568-589 5-26 (166)
359 2bcg_Y Protein YP2, GTP-bindin 94.6 0.028 9.5E-07 55.1 5.0 22 568-589 10-31 (206)
360 3pxi_A Negative regulator of g 94.6 0.069 2.4E-06 63.9 9.3 23 568-590 523-545 (758)
361 1hqc_A RUVB; extended AAA-ATPa 94.6 0.087 3E-06 55.6 9.1 26 565-590 37-62 (324)
362 3iby_A Ferrous iron transport 94.6 0.016 5.6E-07 59.8 3.3 23 568-590 3-25 (256)
363 1z08_A RAS-related protein RAB 94.6 0.018 6E-07 54.2 3.3 22 568-589 8-29 (170)
364 1c1y_A RAS-related protein RAP 94.6 0.017 6E-07 54.0 3.2 22 568-589 5-26 (167)
365 1ky3_A GTP-binding protein YPT 94.5 0.018 6.2E-07 54.7 3.3 23 568-590 10-32 (182)
366 1ek0_A Protein (GTP-binding pr 94.5 0.018 6.2E-07 54.0 3.2 22 568-589 5-26 (170)
367 1wms_A RAB-9, RAB9, RAS-relate 94.5 0.019 6.4E-07 54.5 3.3 22 568-589 9-30 (177)
368 1g16_A RAS-related protein SEC 94.5 0.016 5.6E-07 54.4 2.9 22 568-589 5-26 (170)
369 1m7b_A RND3/RHOE small GTP-bin 94.5 0.026 9.1E-07 54.3 4.3 22 568-589 9-30 (184)
370 3t1o_A Gliding protein MGLA; G 94.5 0.02 6.8E-07 55.3 3.5 25 568-592 16-40 (198)
371 3k53_A Ferrous iron transport 94.5 0.017 5.6E-07 60.1 3.0 24 568-591 5-28 (271)
372 3a4m_A L-seryl-tRNA(SEC) kinas 94.4 0.02 6.8E-07 59.2 3.5 26 565-590 3-28 (260)
373 2qmh_A HPR kinase/phosphorylas 94.4 0.027 9.4E-07 55.8 4.3 36 554-590 23-58 (205)
374 3tw8_B RAS-related protein RAB 94.4 0.019 6.3E-07 54.6 3.0 22 568-589 11-32 (181)
375 3t5d_A Septin-7; GTP-binding p 94.4 0.016 5.4E-07 60.4 2.6 22 568-589 10-31 (274)
376 1svi_A GTP-binding protein YSX 94.3 0.018 6.1E-07 55.8 2.8 23 567-589 24-46 (195)
377 3u61_B DNA polymerase accessor 94.3 0.047 1.6E-06 57.9 6.3 44 696-739 105-148 (324)
378 4dsu_A GTPase KRAS, isoform 2B 94.3 0.022 7.4E-07 54.6 3.3 22 568-589 6-27 (189)
379 2f6r_A COA synthase, bifunctio 94.3 0.018 6.2E-07 60.3 2.9 23 566-588 75-97 (281)
380 4b4t_L 26S protease subunit RP 94.3 0.072 2.5E-06 59.3 7.8 30 562-591 211-240 (437)
381 3pqc_A Probable GTP-binding pr 94.3 0.019 6.3E-07 55.4 2.8 23 568-590 25-47 (195)
382 3bc1_A RAS-related protein RAB 94.3 0.022 7.5E-07 54.7 3.2 22 568-589 13-34 (195)
383 3cmw_A Protein RECA, recombina 94.2 0.1 3.5E-06 67.0 9.9 35 555-590 370-407 (1706)
384 3vfd_A Spastin; ATPase, microt 94.2 0.11 3.6E-06 56.9 9.0 27 564-590 146-172 (389)
385 1r8s_A ADP-ribosylation factor 94.2 0.024 8.2E-07 53.0 3.2 21 568-588 2-22 (164)
386 3be4_A Adenylate kinase; malar 94.2 0.021 7.3E-07 57.0 3.0 26 565-590 4-29 (217)
387 2hxs_A RAB-26, RAS-related pro 94.2 0.026 8.8E-07 53.6 3.5 22 568-589 8-29 (178)
388 1upt_A ARL1, ADP-ribosylation 94.1 0.025 8.5E-07 53.2 3.2 22 567-588 8-29 (171)
389 3t5g_A GTP-binding protein RHE 94.1 0.036 1.2E-06 52.8 4.5 28 568-595 8-40 (181)
390 4bas_A ADP-ribosylation factor 94.1 0.03 1E-06 54.3 3.9 22 567-588 18-39 (199)
391 2g6b_A RAS-related protein RAB 94.1 0.025 8.5E-07 53.8 3.2 22 568-589 12-33 (180)
392 2fg5_A RAB-22B, RAS-related pr 94.1 0.032 1.1E-06 54.1 4.0 22 568-589 25-46 (192)
393 2cxx_A Probable GTP-binding pr 94.1 0.022 7.4E-07 54.8 2.7 22 568-589 3-24 (190)
394 2y8e_A RAB-protein 6, GH09086P 94.1 0.023 7.8E-07 53.9 2.9 22 568-589 16-37 (179)
395 2gf0_A GTP-binding protein DI- 94.1 0.037 1.3E-06 53.6 4.4 21 568-588 10-30 (199)
396 3b1v_A Ferrous iron uptake tra 94.1 0.025 8.6E-07 59.0 3.4 23 568-590 5-27 (272)
397 3cmu_A Protein RECA, recombina 94.1 0.089 3E-06 68.4 9.0 40 563-602 380-420 (2050)
398 3exa_A TRNA delta(2)-isopenten 94.1 0.029 9.8E-07 59.6 3.8 26 566-591 3-28 (322)
399 1z0f_A RAB14, member RAS oncog 94.0 0.027 9.1E-07 53.4 3.2 22 568-589 17-38 (179)
400 2efe_B Small GTP-binding prote 94.0 0.027 9.3E-07 53.6 3.3 22 568-589 14-35 (181)
401 3con_A GTPase NRAS; structural 94.0 0.027 9.1E-07 54.4 3.2 22 568-589 23-44 (190)
402 1sxj_B Activator 1 37 kDa subu 94.0 0.064 2.2E-06 56.3 6.4 42 696-738 107-148 (323)
403 2a9k_A RAS-related protein RAL 94.0 0.028 9.5E-07 53.7 3.2 22 568-589 20-41 (187)
404 3auy_A DNA double-strand break 93.9 0.032 1.1E-06 60.8 4.0 31 556-587 16-46 (371)
405 2h92_A Cytidylate kinase; ross 93.9 0.023 7.8E-07 56.6 2.6 25 566-590 3-27 (219)
406 1gwn_A RHO-related GTP-binding 93.9 0.039 1.3E-06 54.5 4.3 22 568-589 30-51 (205)
407 3tmk_A Thymidylate kinase; pho 93.9 0.029 1E-06 56.4 3.4 29 564-592 3-31 (216)
408 3d3q_A TRNA delta(2)-isopenten 93.9 0.025 8.5E-07 60.8 3.0 25 567-591 8-32 (340)
409 1e4v_A Adenylate kinase; trans 93.9 0.026 8.9E-07 56.2 2.9 23 568-590 2-24 (214)
410 3cmu_A Protein RECA, recombina 93.9 0.11 3.8E-06 67.5 9.3 39 552-590 1065-1105(2050)
411 2g3y_A GTP-binding protein GEM 93.9 0.053 1.8E-06 54.1 5.2 23 568-590 39-61 (211)
412 3reg_A RHO-like small GTPase; 93.8 0.048 1.6E-06 52.9 4.7 22 568-589 25-46 (194)
413 1wf3_A GTP-binding protein; GT 93.8 0.029 9.9E-07 59.4 3.3 22 568-589 9-30 (301)
414 1zd9_A ADP-ribosylation factor 93.8 0.04 1.4E-06 53.3 4.1 22 568-589 24-45 (188)
415 2xb4_A Adenylate kinase; ATP-b 93.8 0.031 1E-06 56.2 3.4 23 568-590 2-24 (223)
416 2xtp_A GTPase IMAP family memb 93.8 0.027 9.3E-07 57.8 3.0 24 567-590 23-46 (260)
417 1ak2_A Adenylate kinase isoenz 93.8 0.034 1.2E-06 56.2 3.7 27 565-591 15-41 (233)
418 2gf9_A RAS-related protein RAB 93.8 0.031 1E-06 54.0 3.2 22 568-589 24-45 (189)
419 2atv_A RERG, RAS-like estrogen 93.8 0.051 1.7E-06 52.8 4.8 23 567-589 29-51 (196)
420 3hu3_A Transitional endoplasmi 93.8 0.076 2.6E-06 60.1 6.9 28 563-590 235-262 (489)
421 3kkq_A RAS-related protein M-R 93.8 0.031 1.1E-06 53.4 3.2 22 568-589 20-41 (183)
422 1vg8_A RAS-related protein RAB 93.8 0.031 1.1E-06 54.6 3.3 23 568-590 10-32 (207)
423 1ypw_A Transitional endoplasmi 93.8 0.0035 1.2E-07 75.6 -4.3 62 559-622 504-565 (806)
424 3v9p_A DTMP kinase, thymidylat 93.8 0.028 9.5E-07 57.1 2.9 28 564-591 23-50 (227)
425 2bov_A RAla, RAS-related prote 93.8 0.031 1.1E-06 54.5 3.2 22 568-589 16-37 (206)
426 2bme_A RAB4A, RAS-related prot 93.7 0.029 9.8E-07 53.8 2.9 22 568-589 12-33 (186)
427 1z06_A RAS-related protein RAB 93.7 0.033 1.1E-06 53.7 3.3 22 568-589 22-43 (189)
428 4edh_A DTMP kinase, thymidylat 93.7 0.035 1.2E-06 55.7 3.5 29 564-592 4-32 (213)
429 4dhe_A Probable GTP-binding pr 93.6 0.019 6.4E-07 57.1 1.4 24 567-590 30-53 (223)
430 1nrj_B SR-beta, signal recogni 93.6 0.034 1.2E-06 55.1 3.2 24 567-590 13-36 (218)
431 1sky_E F1-ATPase, F1-ATP synth 93.6 0.016 5.4E-07 64.9 0.9 43 555-598 141-183 (473)
432 1q57_A DNA primase/helicase; d 93.6 0.042 1.4E-06 62.4 4.4 36 556-591 232-267 (503)
433 3tkl_A RAS-related protein RAB 93.6 0.045 1.5E-06 52.9 4.0 23 568-590 18-40 (196)
434 1zbd_A Rabphilin-3A; G protein 93.6 0.036 1.2E-06 54.1 3.3 22 568-589 10-31 (203)
435 1mh1_A RAC1; GTP-binding, GTPa 93.6 0.036 1.2E-06 52.9 3.2 21 568-588 7-27 (186)
436 3iev_A GTP-binding protein ERA 93.6 0.034 1.2E-06 59.0 3.3 23 567-589 11-33 (308)
437 2cjw_A GTP-binding protein GEM 93.6 0.036 1.2E-06 54.1 3.2 22 568-589 8-29 (192)
438 2qu8_A Putative nucleolar GTP- 93.5 0.035 1.2E-06 55.7 3.1 23 567-589 30-52 (228)
439 3oes_A GTPase rhebl1; small GT 93.5 0.033 1.1E-06 54.5 2.9 24 567-590 25-48 (201)
440 1jbk_A CLPB protein; beta barr 93.5 0.042 1.4E-06 52.4 3.5 28 564-591 41-68 (195)
441 1moz_A ARL1, ADP-ribosylation 93.5 0.022 7.7E-07 54.4 1.6 23 566-588 18-40 (183)
442 2a5j_A RAS-related protein RAB 93.5 0.038 1.3E-06 53.5 3.3 22 568-589 23-44 (191)
443 1p5z_B DCK, deoxycytidine kina 93.5 0.025 8.5E-07 58.4 2.0 29 563-591 21-49 (263)
444 2il1_A RAB12; G-protein, GDP, 93.5 0.034 1.2E-06 54.0 2.9 22 568-589 28-49 (192)
445 3lv8_A DTMP kinase, thymidylat 93.4 0.038 1.3E-06 56.4 3.3 28 565-592 26-53 (236)
446 4tmk_A Protein (thymidylate ki 93.4 0.04 1.4E-06 55.3 3.4 27 565-591 2-28 (213)
447 3ld9_A DTMP kinase, thymidylat 93.4 0.041 1.4E-06 55.7 3.4 28 564-591 19-46 (223)
448 3crm_A TRNA delta(2)-isopenten 93.4 0.036 1.2E-06 59.2 3.1 25 567-591 6-30 (323)
449 3bwd_D RAC-like GTP-binding pr 93.4 0.045 1.5E-06 52.1 3.6 24 566-589 8-31 (182)
450 2ocp_A DGK, deoxyguanosine kin 93.4 0.034 1.1E-06 56.5 2.8 27 565-591 1-27 (241)
451 3dz8_A RAS-related protein RAB 93.4 0.035 1.2E-06 53.7 2.9 23 568-590 25-47 (191)
452 3llu_A RAS-related GTP-binding 93.3 0.04 1.4E-06 53.7 3.1 25 568-592 22-46 (196)
453 2j37_W Signal recognition part 93.3 0.1 3.5E-06 59.2 6.9 27 565-591 100-126 (504)
454 3cph_A RAS-related protein SEC 93.3 0.041 1.4E-06 54.0 3.2 23 567-589 21-43 (213)
455 1x3s_A RAS-related protein RAB 93.3 0.042 1.4E-06 52.9 3.2 22 568-589 17-38 (195)
456 3tqf_A HPR(Ser) kinase; transf 93.3 0.056 1.9E-06 52.3 4.0 34 554-588 5-38 (181)
457 3i8s_A Ferrous iron transport 93.3 0.038 1.3E-06 57.6 3.0 23 568-590 5-27 (274)
458 2fv8_A H6, RHO-related GTP-bin 93.3 0.038 1.3E-06 54.4 2.9 23 567-589 26-48 (207)
459 2p5s_A RAS and EF-hand domain 93.3 0.043 1.5E-06 53.6 3.3 24 566-589 28-51 (199)
460 2o52_A RAS-related protein RAB 93.2 0.04 1.4E-06 54.0 3.0 22 568-589 27-48 (200)
461 1ltq_A Polynucleotide kinase; 93.2 0.041 1.4E-06 57.7 3.2 23 567-589 3-25 (301)
462 1zj6_A ADP-ribosylation factor 93.2 0.041 1.4E-06 53.0 3.0 22 567-588 17-38 (187)
463 2wsm_A Hydrogenase expression/ 93.2 0.04 1.4E-06 54.7 2.9 24 567-590 31-54 (221)
464 3def_A T7I23.11 protein; chlor 93.2 0.041 1.4E-06 56.8 3.0 22 568-589 38-59 (262)
465 2h17_A ADP-ribosylation factor 93.1 0.037 1.3E-06 53.1 2.5 22 568-589 23-44 (181)
466 3a1s_A Iron(II) transport prot 93.1 0.046 1.6E-06 56.4 3.4 23 568-590 7-29 (258)
467 3foz_A TRNA delta(2)-isopenten 93.1 0.043 1.5E-06 58.1 3.2 26 566-591 10-35 (316)
468 1jwy_B Dynamin A GTPase domain 93.1 0.04 1.4E-06 58.2 3.0 23 568-590 26-48 (315)
469 2iwr_A Centaurin gamma 1; ANK 93.1 0.037 1.3E-06 52.6 2.5 22 568-589 9-30 (178)
470 2f7s_A C25KG, RAS-related prot 93.1 0.049 1.7E-06 53.8 3.4 22 568-589 27-48 (217)
471 1h65_A Chloroplast outer envel 93.1 0.041 1.4E-06 57.0 3.0 23 568-590 41-63 (270)
472 3c5c_A RAS-like protein 12; GD 93.1 0.048 1.7E-06 52.7 3.3 21 568-588 23-43 (187)
473 2h57_A ADP-ribosylation factor 93.1 0.034 1.2E-06 53.8 2.1 23 568-590 23-45 (190)
474 4b4t_K 26S protease regulatory 93.0 0.15 5.3E-06 56.5 7.6 30 562-591 202-231 (428)
475 3cnl_A YLQF, putative uncharac 93.0 0.048 1.6E-06 56.5 3.4 30 567-596 100-129 (262)
476 2q3h_A RAS homolog gene family 93.0 0.051 1.7E-06 52.9 3.3 23 567-589 21-43 (201)
477 2j1l_A RHO-related GTP-binding 93.0 0.046 1.6E-06 54.2 3.0 21 568-588 36-56 (214)
478 2fh5_B SR-beta, signal recogni 93.0 0.065 2.2E-06 52.8 4.1 24 567-590 8-31 (214)
479 2xxa_A Signal recognition part 92.9 0.14 4.7E-06 57.0 7.1 29 565-593 99-127 (433)
480 3q3j_B RHO-related GTP-binding 92.9 0.069 2.4E-06 53.0 4.2 23 567-589 28-50 (214)
481 2aka_B Dynamin-1; fusion prote 92.9 0.042 1.5E-06 57.3 2.8 23 568-590 28-50 (299)
482 2fu5_C RAS-related protein RAB 92.9 0.034 1.2E-06 53.1 1.9 22 568-589 10-31 (183)
483 2gco_A H9, RHO-related GTP-bin 92.8 0.047 1.6E-06 53.4 2.9 22 568-589 27-48 (201)
484 4gzl_A RAS-related C3 botulinu 92.8 0.076 2.6E-06 52.2 4.3 23 566-588 30-52 (204)
485 3umf_A Adenylate kinase; rossm 92.7 0.035 1.2E-06 56.0 1.6 29 563-591 26-54 (217)
486 1a5t_A Delta prime, HOLB; zinc 92.7 0.38 1.3E-05 51.3 10.0 25 568-592 26-50 (334)
487 2p65_A Hypothetical protein PF 92.6 0.051 1.7E-06 51.8 2.7 29 564-592 41-69 (187)
488 2atx_A Small GTP binding prote 92.6 0.056 1.9E-06 52.3 2.9 22 568-589 20-41 (194)
489 2b6h_A ADP-ribosylation factor 92.6 0.05 1.7E-06 53.0 2.6 23 566-588 29-51 (192)
490 3r7w_A Gtpase1, GTP-binding pr 92.5 0.061 2.1E-06 56.9 3.4 26 565-590 2-27 (307)
491 2yl4_A ATP-binding cassette SU 92.4 19 0.00064 41.4 34.3 44 331-375 181-224 (595)
492 2hf9_A Probable hydrogenase ni 92.4 0.058 2E-06 53.7 2.9 23 568-590 40-62 (226)
493 3eph_A TRNA isopentenyltransfe 92.3 0.06 2E-06 59.1 3.1 26 566-591 2-27 (409)
494 4djt_A GTP-binding nuclear pro 92.3 0.032 1.1E-06 55.2 0.8 22 568-589 13-34 (218)
495 4b4t_J 26S protease regulatory 92.3 0.21 7.1E-06 54.8 7.3 29 563-591 179-207 (405)
496 2hup_A RAS-related protein RAB 92.1 0.068 2.3E-06 52.4 2.9 22 568-589 31-52 (201)
497 3cpj_B GTP-binding protein YPT 92.1 0.077 2.6E-06 52.8 3.3 22 568-589 15-36 (223)
498 4hlc_A DTMP kinase, thymidylat 92.0 0.082 2.8E-06 52.6 3.4 26 566-591 2-27 (205)
499 2x77_A ADP-ribosylation factor 92.0 0.047 1.6E-06 52.6 1.6 22 567-588 23-44 (189)
500 3euj_A Chromosome partition pr 92.0 0.23 7.8E-06 55.9 7.4 77 670-750 371-464 (483)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9.6e-105 Score=1004.81 Aligned_cols=574 Identities=33% Similarity=0.471 Sum_probs=504.5
Q ss_pred chhHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------C-----------C-h----hHHHH
Q 003981 160 LITWGLLWSLFLKH-KLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGA------R-----------P-E----PLWKL 216 (782)
Q Consensus 160 ~~~~~~l~~~l~~~-~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~------~-----------~-~----~l~~~ 216 (782)
+.+++.+++|..++ +..++++++++++..+...+++++++.++|.+... . . . .+...
T Consensus 59 ~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1321)
T 4f4c_A 59 KVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNV 138 (1321)
T ss_dssp CCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHH
T ss_pred CCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHH
Confidence 34555666664333 33444455555554444445556778888865310 0 0 0 11223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 003981 217 LSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDR 296 (782)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~ 296 (782)
...+++++++..++.++..+++.++++++..++|.++|+|++++|++||+++++|++++|+++|++.++++++..+. .
T Consensus 139 ~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~--~ 216 (1321)
T 4f4c_A 139 VWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIG--M 216 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 33444555666777788888899999999999999999999999999999999999999999999999999877665 3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHH
Q 003981 297 GFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKR 376 (782)
Q Consensus 297 ~~~~~~~~i~~li~l~~~~~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~ 376 (782)
++..+++++++++++++++|++++++++++|+++++..++.++.++..++.++..++.++.+.|.++||++||+|++|+.
T Consensus 217 ~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 296 (1321)
T 4f4c_A 217 AFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRY 296 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHH
Confidence 67778888999999999999999998888888888888888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 377 QMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTF 456 (782)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~ 456 (782)
+.++|.+..++.++...+.....++..++..++..+..++++|+|++++.+|.+|+|.+++++.+...+..|+..++..+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~ 376 (1321)
T 4f4c_A 297 ELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQL 376 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcc
Q 003981 457 GDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSG 536 (782)
Q Consensus 457 ~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 536 (782)
..++++.++++||.++++.+++.+.. .. ....+.+..|
T Consensus 377 ~~~~~~~~s~~ri~~~l~~~~~~~~~---------~~---------------------------------~~~~~~~~~g 414 (1321)
T 4f4c_A 377 AVLGTAQGAASGIYEVLDRKPVIDSS---------SK---------------------------------AGRKDMKIKG 414 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCSSCS---------SS---------------------------------CCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcccccc---------cc---------------------------------ccccCCCCCC
Confidence 99999999999999999875432110 00 0011123467
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
+|+|+||+|+||++++.++|+||||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.++||++|
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 89999999999977778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 617 SIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 617 a~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
|||+||||||+|||||||+||+| ++++|++++||+.|+++|||++||+||||+|||+|.+||||||||||||||+|+|
T Consensus 495 ~~v~Q~~~Lf~~TI~eNI~~g~~--~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~ 572 (1321)
T 4f4c_A 495 AVVSQEPALFNCTIEENISLGKE--GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRN 572 (1321)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTC
T ss_pred cccCCcceeeCCchhHHHhhhcc--cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccC
Confidence 99999999999999999999975 5899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHH
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCT 776 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~ 776 (782)
|+||||||||||||++||+.|+++|+++.+|||+|+||||++++++||+|+||++|+|+|+|||+||++++|.|+++++.
T Consensus 573 ~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~ 652 (1321)
T 4f4c_A 573 PKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTA 652 (1321)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHH
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 003981 777 QRL 779 (782)
Q Consensus 777 q~~ 779 (782)
|..
T Consensus 653 q~~ 655 (1321)
T 4f4c_A 653 QTF 655 (1321)
T ss_dssp HHH
T ss_pred hhc
Confidence 864
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.1e-101 Score=974.35 Aligned_cols=569 Identities=31% Similarity=0.418 Sum_probs=471.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 166 LWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP---EPLWKLLSKVGLLYALEPIFTVIFVMNMNTVW 242 (782)
Q Consensus 166 l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (782)
++.+.+++++.+++++++.++..++....++++...++....... .....+...++++.++..++.++..++....+
T Consensus 743 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ 822 (1321)
T 4f4c_A 743 ILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIAS 822 (1321)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666656666667777777776653221 11222233344455566677788888888999
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhc--cChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 003981 243 EKVMSIVKAQIFRRVLIQKAEFFDR--YKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (782)
Q Consensus 243 ~~~~~~lr~~lf~kll~lp~~~f~~--~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lal 320 (782)
.++..++|.++|+|++++|++||+. +++|++++|+++|++.+++.+...+. ..+..++.+++.++++++++|++++
T Consensus 823 ~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~--~~~~~~~~~i~~~~~~~~~~~~l~l 900 (1321)
T 4f4c_A 823 ESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFS--TVITTLVSMVAGIGLAFFYGWQMAL 900 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHH--HHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHH--HHHHHhhhHHHHeeeehHHhHHHHH
Confidence 9999999999999999999999985 78999999999999999999877665 3566777888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (782)
Q Consensus 321 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (782)
++++++|++++...++.++......+..+..++....+.|+++|+++||+|++|+.+.++|.+..+...+...+......
T Consensus 901 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1321)
T 4f4c_A 901 LIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQG 980 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777666666555555544455556667778889999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 003981 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGI--VASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEI 478 (782)
Q Consensus 401 ~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~--l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~ 478 (782)
+...+...+..+..++++++|++++..|..+.+. +++++.+......++..+...+.+++++..+++|+.++++.+++
T Consensus 981 ~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 1060 (1321)
T 4f4c_A 981 LSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISK 1060 (1321)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 8777777778888888899999999988776654 44444444444567777888899999999999999999986543
Q ss_pred chhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceee
Q 003981 479 DDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNG 558 (782)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~ 558 (782)
.+.. . .+....+..|+|+|+||+|+||++++.+||+|
T Consensus 1061 ~~~~----------~---------------------------------~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~ 1097 (1321)
T 4f4c_A 1061 IDSL----------S---------------------------------LAGEKKKLYGKVIFKNVRFAYPERPEIEILKG 1097 (1321)
T ss_dssp SCTT----------C---------------------------------CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEE
T ss_pred CCCc----------c---------------------------------CCCCCCCCCCeEEEEEEEEeCCCCCCCccccc
Confidence 2110 0 00111234688999999999997777789999
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCC
Q 003981 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638 (782)
Q Consensus 559 Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~ 638 (782)
|||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|++++++++||++|+||||||+||+|||||||+||.
T Consensus 1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gl 1177 (1321)
T 4f4c_A 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGL 1177 (1321)
T ss_dssp EEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSS
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q 003981 639 PDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQ 718 (782)
Q Consensus 639 p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~ 718 (782)
+.++++|||+++||+.|+++|||.+||+||||+|||+|.+|||||||||||||||+|||+||||||||||||++||+.|+
T Consensus 1178 d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq 1257 (1321)
T 4f4c_A 1178 DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQ 1257 (1321)
T ss_dssp CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHH
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhhh
Q 003981 719 DALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQRL 779 (782)
Q Consensus 719 ~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 779 (782)
++|++..+|||+|+|||||+|+++||+|+|||+|+|+|+|||+||++++|.|++||+.|..
T Consensus 1258 ~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1258 EALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMT 1318 (1321)
T ss_dssp HHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC------------
T ss_pred HHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999975
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.7e-98 Score=874.72 Aligned_cols=567 Identities=27% Similarity=0.412 Sum_probs=508.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 164 GLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMNTVW 242 (782)
Q Consensus 164 ~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (782)
+.++++++++++.+++++++.++..++.++.|++++.++|.+..... ..++.+..++++++++..++.++..++..+.+
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYAS 91 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888999999999999999999999999999999998764333 23333334444455556667777778888899
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003981 243 EKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIL 322 (782)
Q Consensus 243 ~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~Lali~ 322 (782)
.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++++...+. .++..++.++++++++++++|++++++
T Consensus 92 ~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~--~~~~~~~~~i~~~~~l~~~~~~l~l~~ 169 (587)
T 3qf4_A 92 QNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLR--IVVRAPLLFVGGIVMAVSINVKLSSVL 169 (587)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHCTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987765 356667778888888999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 323 GVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLN 402 (782)
Q Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (782)
++++|++.++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..+++++...+..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (587)
T 3qf4_A 170 IFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFA 249 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777788888888888888899999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Q 003981 403 ESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDAL 482 (782)
Q Consensus 403 ~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~ 482 (782)
.++..++..+..++++++|++++.+|.+|+|.+++++.|...+..|+..++..+..++++.++++|+.++++.+++.+.
T Consensus 250 ~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~- 328 (587)
T 3qf4_A 250 LPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEE- 328 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCC-
Confidence 8888888888888999999999999999999999999999999999999999999999999999999999986542111
Q ss_pred hcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEE
Q 003981 483 ANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLT 562 (782)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~ 562 (782)
. . .....+...+.|+|+||+|+|+++ ++++|+|+||+
T Consensus 329 ----------~---~-----------------------------~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~ 365 (587)
T 3qf4_A 329 ----------A---D-----------------------------NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFS 365 (587)
T ss_dssp ----------C---T-----------------------------TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEE
T ss_pred ----------C---C-----------------------------CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEE
Confidence 0 0 000011235689999999999743 56899999999
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN 642 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~ 642 (782)
|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|++||+|||.+|.+ +
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--~ 443 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--D 443 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS--S
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999965 5
Q ss_pred CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 003981 643 VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALN 722 (782)
Q Consensus 643 ~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~ 722 (782)
+++++++++++.++++|++.++|+|+||.+||+|.+||||||||++|||||++||+|||||||||+||+++|+.|++.|+
T Consensus 444 ~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~ 523 (587)
T 3qf4_A 444 ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK 523 (587)
T ss_dssp CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhh
Q 003981 723 HLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQR 778 (782)
Q Consensus 723 ~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 778 (782)
++.+++|+|+||||+++++.||+|+||++|+|+|+|+|+||+++++.|+++++.|.
T Consensus 524 ~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 579 (587)
T 3qf4_A 524 RYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQF 579 (587)
T ss_dssp HHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHHHHC
T ss_pred HhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHh
Confidence 99899999999999999999999999999999999999999999999999998875
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.7e-97 Score=868.47 Aligned_cols=568 Identities=29% Similarity=0.442 Sum_probs=508.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----hhH----HHHHHHHHHHHHHHHHHHHHH
Q 003981 163 WGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP----EPL----WKLLSKVGLLYALEPIFTVIF 234 (782)
Q Consensus 163 ~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~----~~l----~~~~~~~~~~~~~~~~~~~~~ 234 (782)
++.++++++++++.+++++++.++..++.++.|++++.++|.+..... ..+ +.+...+++++++..++.++.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999999999998874322 112 122222333344556666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 003981 235 VMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNI 314 (782)
Q Consensus 235 ~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~ 314 (782)
.+...+++.++..++|.++|+|++++|++||+++++|++++|+++|++.+++++...+. ..+..++.+++++++++++
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~--~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLM--NIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCC--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999887665 3567777888888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 003981 315 APQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIK 394 (782)
Q Consensus 315 ~~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~ 394 (782)
+|+++++++++++++.++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|++..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877777777777888888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003981 395 LGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILS 474 (782)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~ 474 (782)
..++.+....+..++..+..++++++|++++.+|.+|+|.+++++.|...+..|+..++..+..++++.++++|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99888888888888888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCcc
Q 003981 475 TTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVV 554 (782)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~ 554 (782)
.+++.+.. . .........+.|+++||+|+|+++ +++
T Consensus 320 ~~~~~~~~----------~---------------------------------~~~~~~~~~~~i~~~~v~~~y~~~-~~~ 355 (578)
T 4a82_A 320 EDYDIKNG----------V---------------------------------GAQPIEIKQGRIDIDHVSFQYNDN-EAP 355 (578)
T ss_dssp CCCSSCCC----------T---------------------------------TCCCCCCCSCCEEEEEEEECSCSS-SCC
T ss_pred CCCcccCC----------C---------------------------------CccccCCCCCeEEEEEEEEEcCCC-CCc
Confidence 65421110 0 000001234689999999999842 568
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHH
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENI 634 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI 634 (782)
+|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+|++|++||+|||
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 435 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI 435 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHH
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 003981 635 AYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSE 714 (782)
Q Consensus 635 ~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE 714 (782)
.+|.| +.++++++++|+.++++|++.++|+|+||.+||+|.+||||||||++|||||++||+|||||||||+||+++|
T Consensus 436 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~ 513 (578)
T 4a82_A 436 LLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 513 (578)
T ss_dssp GGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHH
T ss_pred hcCCC--CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 99965 4789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhh
Q 003981 715 RLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQR 778 (782)
Q Consensus 715 ~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 778 (782)
+.+.+.|+++.+++|+|+||||+++++.||+|+||++|+|+|+|+|+||++++|.|+++++.|.
T Consensus 514 ~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~q~ 577 (578)
T 4a82_A 514 SIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN 577 (578)
T ss_dssp HHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhhc
Confidence 9999999999899999999999999999999999999999999999999999999999999885
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.1e-98 Score=876.19 Aligned_cols=569 Identities=30% Similarity=0.476 Sum_probs=514.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 161 ITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGAR-PEPLWKLLSKVGLLYALEPIFTVIFVMNMN 239 (782)
Q Consensus 161 ~~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (782)
..++.++++++++++.+++++++.++..++.++.|++++.++|.+.... ...++.+...+++++++..++.++..+...
T Consensus 23 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (598)
T 3qf4_B 23 ATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIML 102 (598)
T ss_dssp HHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788899999999999999999999999999999999886433 233444444555566677777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Q 003981 240 TVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLA 319 (782)
Q Consensus 240 ~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~La 319 (782)
+++.++..++|.++|+|++++|++||+++++|++++|+++|++.+++++...+. .++..++.++++++++++++|+++
T Consensus 103 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~--~~~~~~~~~i~~~~~l~~~~~~l~ 180 (598)
T 3qf4_B 103 TLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSII--QFFSGIVTLAGAVIMMFRVNVILS 180 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987665 356777888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 320 PILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFK 399 (782)
Q Consensus 320 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (782)
+++++++++.+++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..
T Consensus 181 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (598)
T 3qf4_B 181 LVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFS 260 (598)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887777777777788888888888888889999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 003981 400 SLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEID 479 (782)
Q Consensus 400 ~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~ 479 (782)
.....+..++..+..++++++|++++.+|.+|+|.+++++.|...+..|+..++..+..++++.++++|+.++++.+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 340 (598)
T 3qf4_B 261 GVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK 340 (598)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999875422
Q ss_pred hhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeee
Q 003981 480 DALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGL 559 (782)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~I 559 (782)
+. + ......+..++|+++||+|+|++ +.++|+|+
T Consensus 341 ~~-----------~---------------------------------~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i 374 (598)
T 3qf4_B 341 DD-----------P---------------------------------DAVELREVRGEIEFKNVWFSYDK--KKPVLKDI 374 (598)
T ss_dssp CC-----------S---------------------------------SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSE
T ss_pred CC-----------C---------------------------------CCCCCCCCCCeEEEEEEEEECCC--CCccccce
Confidence 10 0 00001123568999999999973 46799999
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCC
Q 003981 560 NLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639 (782)
Q Consensus 560 sl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p 639 (782)
||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|||++|++||+|||.+|+|
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~ 454 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP 454 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 003981 640 DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQD 719 (782)
Q Consensus 640 ~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~ 719 (782)
+.++++++++++.+++++++.++|+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++|+.|++
T Consensus 455 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~ 532 (598)
T 3qf4_B 455 --GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532 (598)
T ss_dssp --TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhhh
Q 003981 720 ALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQRL 779 (782)
Q Consensus 720 ~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 779 (782)
.|+++.+|+|+|+||||+++++.||+|+||++|+|+|+|+|+||++++|.|++++..|..
T Consensus 533 ~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 533 AMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYG 592 (598)
T ss_dssp HHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHHHG
T ss_pred HHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhh
Confidence 999998999999999999999999999999999999999999999999999999998764
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.1e-95 Score=849.01 Aligned_cols=569 Identities=29% Similarity=0.429 Sum_probs=506.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 161 ITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEP-LWKLLSKVGLLYALEPIFTVIFVMNMN 239 (782)
Q Consensus 161 ~~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (782)
..++.++++++++++.+++++++.++..++.++.|++++.++|.+....... ++.....++++.++..++.++..+...
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b5x_A 11 QTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLS 90 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888889999999999999999999876432222 222222234445556677777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Q 003981 240 TVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLA 319 (782)
Q Consensus 240 ~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~La 319 (782)
+.+.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++++...+. ..+..++.++++++++++++|+++
T Consensus 91 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~--~~~~~~~~~i~~~~~l~~~~~~l~ 168 (582)
T 3b5x_A 91 WVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALV--SIVREGASIIGLLTLMFWNSWQLS 168 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 899999999999999999999999999999999999999999999999877665 356777788888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 320 PILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFK 399 (782)
Q Consensus 320 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (782)
+++++++++.+++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..+++++...+..+..
T Consensus 169 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T 3b5x_A 169 LVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQ 248 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877777777777778888888888888889999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 003981 400 SLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEID 479 (782)
Q Consensus 400 ~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~ 479 (782)
.....+..++..+..++++++|++++.+|.+|+|.+++++.+...+..|+..++..+..++++.++++|+.++++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 328 (582)
T 3b5x_A 249 SIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETER 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999764321
Q ss_pred hhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeee
Q 003981 480 DALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGL 559 (782)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~I 559 (782)
+. . . .......+.|+++||+|+|+++ ++++|+|+
T Consensus 329 ~~-----------~---~-------------------------------~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i 362 (582)
T 3b5x_A 329 DN-----------G---K-------------------------------YEAERVNGEVDVKDVTFTYQGK-EKPALSHV 362 (582)
T ss_pred CC-----------C---C-------------------------------CCCCCCCCeEEEEEEEEEcCCC-Cccccccc
Confidence 10 0 0 0001124579999999999742 35799999
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCC
Q 003981 560 NLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639 (782)
Q Consensus 560 sl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p 639 (782)
||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+|++|++||+|||.+|..
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~ 442 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE 442 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999961
Q ss_pred CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 003981 640 DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQD 719 (782)
Q Consensus 640 ~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~ 719 (782)
++.++++++++++.+++++++.++|+||||.+||+|.+||||||||++|||||++||+|||||||||+||+++|+.|.+
T Consensus 443 -~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~ 521 (582)
T 3b5x_A 443 -GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA 521 (582)
T ss_pred -CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 2478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhh
Q 003981 720 ALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQR 778 (782)
Q Consensus 720 ~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 778 (782)
.|+++.+|+|+|+||||+++++.||+|+||++|+|+|.|+|+||+++++.|+++++.|.
T Consensus 522 ~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 522 ALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHhh
Confidence 99998889999999999999999999999999999999999999999999999999885
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=9.6e-95 Score=847.92 Aligned_cols=569 Identities=33% Similarity=0.445 Sum_probs=506.1
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 161 ITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPL-WKLLSKVGLLYALEPIFTVIFVMNMN 239 (782)
Q Consensus 161 ~~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (782)
..++.++++++++++.+++++++.++..++.++.|++++.++|.+........ ......+++++++..++.++..+...
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCIS 90 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888999999999999999997654322222 12222234445556677777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Q 003981 240 TVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLA 319 (782)
Q Consensus 240 ~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~La 319 (782)
+++.++..++|.++|+|++++|++||+++++|++++|+++|++.+++++...+. ..+..++.++++++++++++|+++
T Consensus 91 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~--~~~~~~~~~i~~~~~l~~~~~~l~ 168 (582)
T 3b60_A 91 WVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALI--TVVREGASIIGLFIMMFYYSWQLS 168 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 899999999999999999999999999999999999999999999999887765 356777788888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 320 PILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFK 399 (782)
Q Consensus 320 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (782)
++++++++++.++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..+++.+...+..+..
T Consensus 169 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T 3b60_A 169 IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 248 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877777777777778888888888888889999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 003981 400 SLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEID 479 (782)
Q Consensus 400 ~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~ 479 (782)
.....+..++..+..++++++|++++.+|.+|+|.+++++.+...+..|+..++..+..++++.++++|+.++++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 328 (582)
T 3b60_A 249 SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 328 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999865321
Q ss_pred hhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeee
Q 003981 480 DALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGL 559 (782)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~I 559 (782)
+. . +....+..+.|+++||+|+|+++ ++++|+|+
T Consensus 329 ~~-----------~----------------------------------~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v 362 (582)
T 3b60_A 329 DE-----------G----------------------------------KRVIDRATGDLEFRNVTFTYPGR-EVPALRNI 362 (582)
T ss_dssp CC-----------C----------------------------------CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEE
T ss_pred cC-----------C----------------------------------CCCCCCCCCcEEEEEEEEEcCCC-CCccccce
Confidence 10 0 00001124579999999999732 35799999
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCC
Q 003981 560 NLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639 (782)
Q Consensus 560 sl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p 639 (782)
||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+|++|++||+|||.+|..
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~ 442 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART 442 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999861
Q ss_pred CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 003981 640 DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQD 719 (782)
Q Consensus 640 ~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~ 719 (782)
++.++++++++++.+++++++.++|+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++|+.|.+
T Consensus 443 -~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~ 521 (582)
T 3b60_A 443 -EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521 (582)
T ss_dssp -SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH
Confidence 2478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhh
Q 003981 720 ALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQR 778 (782)
Q Consensus 720 ~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 778 (782)
.|+++.+|+|+|+||||+++++.||+|+||++|+|+|.|+|+||+++++.|+++++.|.
T Consensus 522 ~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b60_A 522 ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQF 580 (582)
T ss_dssp HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHTC
T ss_pred HHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhc
Confidence 99998889999999999999999999999999999999999999999999999999885
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.3e-94 Score=846.73 Aligned_cols=573 Identities=36% Similarity=0.536 Sum_probs=491.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP----EPLWKLLSKVGLLYALEPIFTVIFVMN 237 (782)
Q Consensus 162 ~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~ 237 (782)
.++.++++++++++.+++++++.++..++.++.|++++.++|.+..... ..++.+...+++++++..++.++..+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (595)
T 2yl4_A 6 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYL 85 (595)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888888889999999999999998764221 123333333444455566667777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhH
Q 003981 238 MNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQ 317 (782)
Q Consensus 238 ~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~~ 317 (782)
..+.+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++++...+. ..+..++.++++++++++++|+
T Consensus 86 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~--~~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 86 MQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLS--DGLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHH--HHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHH
Confidence 88899999999999999999999999999999999999999999999988877665 3566777888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 318 LAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGT 397 (782)
Q Consensus 318 Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~ 397 (782)
+++++++++++++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..+++++...+..+
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 243 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777777777777778888888888888889999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 003981 398 FKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTE 477 (782)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~ 477 (782)
.......+..++..+..++++++|++++.+|.+|+|.+++++.+...+..|+..++..+..++++.++++|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 323 (595)
T 2yl4_A 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888999999999999999999999999999999999999999999999999999999998653
Q ss_pred cchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCccc-EEEEeeEEEcCCCCCccce
Q 003981 478 IDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGD-ICLEDVYFSYPLRPDVVIL 556 (782)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-I~f~nVsF~Y~~~~~~~vL 556 (782)
+.+. .. .........++ |+++||+|+|+++++.++|
T Consensus 324 ~~~~----------~~---------------------------------~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl 360 (595)
T 2yl4_A 324 KLPF----------NE---------------------------------GVILNEKSFQGALEFKNVHFAYPARPEVPIF 360 (595)
T ss_dssp SSCS----------SC---------------------------------SBCCCTTTCCCCEEEEEEEEECSSCTTSEEE
T ss_pred ccCC----------CC---------------------------------CCCCCcCCCCCeEEEEEEEEEeCCCCCCccc
Confidence 2110 00 00000112467 9999999999753345799
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHc
Q 003981 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAY 636 (782)
Q Consensus 557 ~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~ 636 (782)
+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+|++|++||+|||.+
T Consensus 361 ~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~ 440 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAY 440 (595)
T ss_dssp EEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHT
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 003981 637 GLPD-ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSER 715 (782)
Q Consensus 637 G~p~-~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~ 715 (782)
|.+. .+.++++++++++.+++++++.++|+|+||.+||+|.+||||||||++|||||+++|+|||||||||+||+++|+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~ 520 (595)
T 2yl4_A 441 GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEY 520 (595)
T ss_dssp TSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHH
T ss_pred cCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHH
Confidence 9653 136899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc-cCchHHHHHHhhh
Q 003981 716 LVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR-KGQYASLVCTQRL 779 (782)
Q Consensus 716 ~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~-~g~Y~~L~~~q~~ 779 (782)
.|.+.|+++.+++|+|+||||+++++.||+|+||++|+|+|.|+|+||+++ ++.|+++++.|..
T Consensus 521 ~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q~~ 585 (595)
T 2yl4_A 521 LVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSF 585 (595)
T ss_dssp HHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C-----------
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHHHHHhhc
Confidence 999999998889999999999999999999999999999999999999984 8999999988764
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.6e-93 Score=900.58 Aligned_cols=571 Identities=34% Similarity=0.462 Sum_probs=504.9
Q ss_pred hHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------C-------------hhHHHHHHH
Q 003981 162 TWGLLWSLF-LKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGAR--------P-------------EPLWKLLSK 219 (782)
Q Consensus 162 ~~~~l~~~l-~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~--------~-------------~~l~~~~~~ 219 (782)
.+..++++. +.+++.++++++++++..++..+.|++++.++|.+.... . ..+..+..+
T Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1284)
T 3g5u_A 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYY 113 (1284)
T ss_dssp TTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHH
Confidence 344555555 345666777788888888888889999999998764210 0 011223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 003981 220 VGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFR 299 (782)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~kll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~ 299 (782)
+++++++..++.++..+++..++.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+. .++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~--~~~~ 191 (1284)
T 3g5u_A 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIG--MFFQ 191 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 44455566677778888888999999999999999999999999999999999999999999999999988775 3667
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHH
Q 003981 300 ALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQML 379 (782)
Q Consensus 300 ~~~~~i~~li~l~~~~~~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~ 379 (782)
.+++++++++++++++|++++++++++|+++++..++.++.++..++.++..+++++.+.|+++|+++||+|++|+.+.+
T Consensus 192 ~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~ 271 (1284)
T 3g5u_A 192 AMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHH
Confidence 77888888999999999999998888888888888888888888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 380 MFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDL 459 (782)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l 459 (782)
+|.+..++.++...+.........++..++..+..++++|+|++++..|.+|+|.+++++.+...+..|+..+...+..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1284)
T 3g5u_A 272 RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAF 351 (1284)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888899999999999999999999999988888888889999999999999
Q ss_pred HHHHHHHHHHHHHhcCCccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEE
Q 003981 460 RGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDIC 539 (782)
Q Consensus 460 ~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~ 539 (782)
+++.++++|+.++++.+++.+.. .. ....+....|.|+
T Consensus 352 ~~~~~a~~ri~~~l~~~~~~~~~---------~~---------------------------------~~~~~~~~~g~i~ 389 (1284)
T 3g5u_A 352 ANARGAAYEVFKIIDNKPSIDSF---------SK---------------------------------SGHKPDNIQGNLE 389 (1284)
T ss_dssp HHHHHHHHHHHHTTSCCCCCSSC---------CS---------------------------------SCCCCTTCCCCEE
T ss_pred HHHHHHHHHHHHHHcCCCcCCcc---------cc---------------------------------cCCCCCCCCCeEE
Confidence 99999999999999865321110 00 0001112467899
Q ss_pred EEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEE
Q 003981 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIV 619 (782)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 619 (782)
|+||+|+|+++++.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++++++|++|+||
T Consensus 390 ~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 469 (1284)
T 3g5u_A 390 FKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVV 469 (1284)
T ss_dssp EEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEE
Confidence 99999999865556899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 003981 620 NQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPI 699 (782)
Q Consensus 620 ~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~I 699 (782)
+|||+||++||+|||.+|.+ +++++++++||+.++++++|.+||+||||.+||+|.+|||||||||||||||++||+|
T Consensus 470 ~Q~~~l~~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~i 547 (1284)
T 3g5u_A 470 SQEPVLFATTIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKI 547 (1284)
T ss_dssp CSSCCCCSSCHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSE
T ss_pred cCCCccCCccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999965 5899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhh
Q 003981 700 LILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQR 778 (782)
Q Consensus 700 LILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~ 778 (782)
|||||||||||+++|+.|+++|+++.+|+|+|+||||++++++||+|+||++|+|+|+|+|+||++++|.|++++..|.
T Consensus 548 liLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 548 LLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626 (1284)
T ss_dssp EEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhh
Confidence 9999999999999999999999999899999999999999999999999999999999999999999999999998765
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.9e-88 Score=848.74 Aligned_cols=573 Identities=31% Similarity=0.418 Sum_probs=499.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 164 GLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-EP----LWKLLSKVGLLYALEPIFTVIFVMNM 238 (782)
Q Consensus 164 ~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~-~~----l~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (782)
+.++++.+++++.+++++++.++..++..+.|++++.+++.+..... .. ...+...++++.++..++.++..+..
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 773 (1284)
T 3g5u_A 694 WRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTF 773 (1284)
T ss_dssp THHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888888888889999999987764322 11 11222233334444555666777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhh--ccChhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 003981 239 NTVWEKVMSIVKAQIFRRVLIQKAEFFD--RYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAP 316 (782)
Q Consensus 239 ~~~~~~~~~~lr~~lf~kll~lp~~~f~--~~~~G~l~srlt~Dv~~i~~~~~~~~~~~~~~~~~~~~i~~li~l~~~~~ 316 (782)
.+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++...+. ..+..+..+++.+++++.++|
T Consensus 774 ~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~--~~~~~~~~~~~~~i~~~~~~~ 851 (1284)
T 3g5u_A 774 GKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLA--VIFQNIANLGTGIIISLIYGW 851 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhH
Confidence 8899999999999999999999999999 589999999999999999999988775 356677788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q 003981 317 QLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLG 396 (782)
Q Consensus 317 ~Lali~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~ 396 (782)
++++++++++|++++...+..+..+....+..+..++....+.|+++|+++||+|++|+.+.++|.+..+...+...+..
T Consensus 852 ~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~ 931 (1284)
T 3g5u_A 852 QLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKA 931 (1284)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888777766666666666667777777888889999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003981 397 TFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTT 476 (782)
Q Consensus 397 ~~~~~~~~~~~~~~~l~~~~il~~G~~lv~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~ 476 (782)
.+.+....+...+..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..++++..+++|+.++++.+
T Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~ 1011 (1284)
T 3g5u_A 932 HVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKT 1011 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888888889999999999999999999999999988888888888888888888999999999999999865
Q ss_pred ccchhhhcccccccccccchhhhhhhhhccCCCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccce
Q 003981 477 EIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVIL 556 (782)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL 556 (782)
++.+.. . . ....+....|.|+|+||+|+|+++++.++|
T Consensus 1012 ~~~~~~----------~---~-----------------------------~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l 1049 (1284)
T 3g5u_A 1012 PEIDSY----------S---T-----------------------------QGLKPNMLEGNVQFSGVVFNYPTRPSIPVL 1049 (1284)
T ss_dssp CSSSSC----------C---S-----------------------------SCCCTTTTSCCEEEEEEEBCCSCGGGCCSB
T ss_pred Cccccc----------c---c-----------------------------ccccccCCCCcEEEEEEEEECCCCCCCeee
Confidence 421110 0 0 000111235789999999999865455799
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHc
Q 003981 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAY 636 (782)
Q Consensus 557 ~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~ 636 (782)
+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++++++|++|+||||||.+|++||+|||.+
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~ 1129 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTC
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHH
Q 003981 637 GLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERL 716 (782)
Q Consensus 637 G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~ 716 (782)
|.+....++++++++++.+++++++.++|+||||.|||+|.+|||||||||+|||||+++|+|||||||||+||+++|+.
T Consensus 1130 ~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~ 1209 (1284)
T 3g5u_A 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV 1209 (1284)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 97755689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHHhhhh
Q 003981 717 VQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCTQRLA 780 (782)
Q Consensus 717 I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~~ 780 (782)
|++.|++..+|+|+|+||||++++++||+|+||++|+|+|.|+|+||++++|.|++||+.|...
T Consensus 1210 i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1210 VQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGA 1273 (1284)
T ss_dssp HHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHHHC--
T ss_pred HHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhhc
Confidence 9999999889999999999999999999999999999999999999999999999999988743
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.9e-70 Score=585.86 Aligned_cols=241 Identities=46% Similarity=0.691 Sum_probs=232.9
Q ss_pred cccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhh
Q 003981 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~ 614 (782)
.+.|+|+||+|+|+. +.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+.+++..++|+
T Consensus 51 ~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~ 128 (306)
T 3nh6_A 51 KGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128 (306)
T ss_dssp SCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHH
T ss_pred CCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhc
Confidence 467999999999973 457999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+|+||+|+|+||++||+|||.||.+ .+++++++++++.+++++++..+|+||+|.+|++|.+|||||||||+|||||+
T Consensus 129 ~i~~v~Q~~~lf~~Tv~eNi~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 129 HIGVVPQDTVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp TEEEECSSCCCCSEEHHHHHHTTST--TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred ceEEEecCCccCcccHHHHHHhhcc--cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999965 47899999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHH
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLV 774 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~ 774 (782)
++|+|||||||||+||+.+++.|++.|+++.+++|+|+||||++++..||+|+||++|+|++.|+|+||++.+|.|+++|
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~ 286 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMW 286 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q 003981 775 CTQRL 779 (782)
Q Consensus 775 ~~q~~ 779 (782)
+.|..
T Consensus 287 ~~q~~ 291 (306)
T 3nh6_A 287 QLQQG 291 (306)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98763
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.3e-58 Score=481.48 Aligned_cols=239 Identities=48% Similarity=0.727 Sum_probs=226.2
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
+|+++||+|+|+.+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++|
T Consensus 7 ~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 69999999999521 35799999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 617 SIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 617 a~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
+||+|++.+|++||+|||.++.+ ..+++++.++++.+++.+++..+|+|+++.+++++.+||||||||++|||||+++
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCT--TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCccccccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999853 3578889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc-cCchHHHHH
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR-KGQYASLVC 775 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~-~g~Y~~L~~ 775 (782)
|+|||||||||+||+.+++.|.+.|+++.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++. ++.|++++.
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 9999999999999999999999999998789999999999999989999999999999999999999987 889999988
Q ss_pred Hhh
Q 003981 776 TQR 778 (782)
Q Consensus 776 ~q~ 778 (782)
.|.
T Consensus 244 ~~~ 246 (247)
T 2ff7_A 244 LQS 246 (247)
T ss_dssp HHC
T ss_pred hhc
Confidence 763
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.1e-57 Score=477.61 Aligned_cols=240 Identities=45% Similarity=0.733 Sum_probs=225.8
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
+.|+++||+|+|++....++|+||||+|++||++||+||||||||||+++|+|+++| +|+|.+||+++.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999743225799999999999999999999999999999999999997 8999999999998888899999
Q ss_pred eEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 616 VSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 616 Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
|+||+|++.+|++||+|||.++.+ ..+++++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 172 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK 172 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcccccCHHHHHhccCC--CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999853 356788999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHH
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVC 775 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~ 775 (782)
+|+|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|.+++.
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 252 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHH
Confidence 99999999999999999999999999998889999999999999989999999999999999999999988899999998
Q ss_pred Hhh
Q 003981 776 TQR 778 (782)
Q Consensus 776 ~q~ 778 (782)
.|.
T Consensus 253 ~~~ 255 (260)
T 2ghi_A 253 MQS 255 (260)
T ss_dssp HHH
T ss_pred hhh
Confidence 774
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.8e-56 Score=474.44 Aligned_cols=242 Identities=47% Similarity=0.742 Sum_probs=223.6
Q ss_pred cccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhh
Q 003981 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~ 614 (782)
.+.|+++||+|+|+++.+.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999997422357999999999999999999999999999999999999999999999999999888888999
Q ss_pred ceEEEcccCCCCcccHHHHHHcCCCCCCCCH-HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSK-DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~-eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
+|+||+|++.+|+.||+|||.|+.+ ..++ +++.++++.+++.+++..+|+|+++.+++.+.+||||||||++|||||
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL 171 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLT--RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL 171 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCS--SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred cEEEEecCCccccccHHHHHhhhcc--cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999854 2333 678888899999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchH
Q 003981 694 LKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYA 771 (782)
Q Consensus 694 lr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~ 771 (782)
+++|+|||||||||+||+.+++.|.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|.
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~ 251 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHH
Confidence 999999999999999999999999999999864 899999999999998899999999999999999999998889999
Q ss_pred HHHHHhh
Q 003981 772 SLVCTQR 778 (782)
Q Consensus 772 ~L~~~q~ 778 (782)
+++..|.
T Consensus 252 ~~~~~~~ 258 (271)
T 2ixe_A 252 SMVEALA 258 (271)
T ss_dssp HHHHC--
T ss_pred HHHHHhh
Confidence 9987764
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-57 Score=475.24 Aligned_cols=237 Identities=43% Similarity=0.684 Sum_probs=223.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+|+|++ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 357999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcccCCCCcccHHHHHHcC-CCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 618 IVNQEPVLFSVSVGENIAYG-LPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G-~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
||+|++.+|++|++|||.++ .+ ..+++++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~ 157 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEG--DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTS--CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEcCCCccccccHHHHHhhhccC--CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998 33 3568889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHHHH
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLVCT 776 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~ 776 (782)
|+|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|++++..
T Consensus 158 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 237 (243)
T 1mv5_A 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (243)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHHHh
Confidence 99999999999999999999999999887899999999999999999999999999999999999999888889998876
Q ss_pred hh
Q 003981 777 QR 778 (782)
Q Consensus 777 q~ 778 (782)
|.
T Consensus 238 ~~ 239 (243)
T 1mv5_A 238 QL 239 (243)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4e-54 Score=476.26 Aligned_cols=228 Identities=23% Similarity=0.447 Sum_probs=216.6
Q ss_pred cccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhh
Q 003981 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~ 614 (782)
.+.|+++||+|+|+.+ +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+|+.+++...+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 4679999999999632 4679999999999999999999999999999999999998 9999999999999999999999
Q ss_pred ceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+|+||+|++.||+.||+|||.+.. ...+++++++++.+++.+++.++|.+++|.++++|.+||||||||+||||||+
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~---~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA---AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC---CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEcCCcccCccCHHHHhhhcc---ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999998652 35689999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
++|+|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|+||++|+|++.|+++|+.++.
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999999887899999999999999999999999999999999999999764
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.1e-53 Score=444.56 Aligned_cols=226 Identities=31% Similarity=0.496 Sum_probs=207.7
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+|+|+.+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||. |+
T Consensus 4 l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~-------------i~ 69 (237)
T 2cbz_A 4 ITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS-------------VA 69 (237)
T ss_dssp EEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSC-------------EE
T ss_pred EEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE-------------EE
Confidence 8999999999632 457999999999999999999999999999999999999999999999993 99
Q ss_pred EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA 697 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p 697 (782)
||+|+|++|+.|++|||.++.. .++++..++++.+++.+++..+|.|++|.+++++.+||||||||++|||||+++|
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQ---LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSC---CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEcCCCcCCCcCHHHHhhCccc---cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999843 2345566778888888888999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHH---HhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHH
Q 003981 698 PILILDEATSALDAVSERLVQDALN---HLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLV 774 (782)
Q Consensus 698 ~ILILDEaTSALD~~tE~~I~~~L~---~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~ 774 (782)
+|||||||||+||+.+++.+.+.|. ++.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++..+.|.+++
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 226 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHH
Confidence 9999999999999999999999984 4456899999999999998899999999999999999999999999999999
Q ss_pred HHhhhh
Q 003981 775 CTQRLA 780 (782)
Q Consensus 775 ~~q~~~ 780 (782)
..|..+
T Consensus 227 ~~~~~~ 232 (237)
T 2cbz_A 227 RTYASH 232 (237)
T ss_dssp HHTCC-
T ss_pred HHHHhh
Confidence 888643
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.8e-53 Score=438.38 Aligned_cols=222 Identities=26% Similarity=0.456 Sum_probs=202.3
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
+.|+++||+|+|+.+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------- 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------- 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSC-------------
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCE-------------
Confidence 359999999999632 457999999999999999999999999999999999999999999999993
Q ss_pred eEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 616 VSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 616 Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
|+||+|++++|++|++|||.++.+ ..+.++.++++.+++.+++..+|.+++|.+++++.+||||||||++|||||++
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~ 147 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS---YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 147 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC---CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS
T ss_pred EEEEecCCcccCCCHHHHhhccCC---cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999843 34556677888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHHH
Q 003981 696 NAPILILDEATSALDAVSERLVQDA-LNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASLV 774 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~-L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~ 774 (782)
+|+|||||||||+||+.+++.+.+. ++++.+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+..+.|.+++
T Consensus 148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 227 (229)
T 2pze_A 148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227 (229)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHHHH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHh
Confidence 9999999999999999999999987 455556899999999999998899999999999999999999998877787765
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.8e-50 Score=428.48 Aligned_cols=221 Identities=28% Similarity=0.440 Sum_probs=189.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC--CCChHhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR--TFDKSEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~--~i~~~~lR~ 614 (782)
-|+++||+|+|++ ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 4899999999973 346999999999999999999999999999999999999999999999999994 334567899
Q ss_pred ceEEEcccC--CCCcccHHHHHHcCCCCCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 615 VVSIVNQEP--VLFSVSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 615 ~Ia~V~Q~~--~LF~gTIreNI~~G~p~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
.|+||+|+| .+|..|++|||.|+......+. +++.++++..++.++. .....+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCCcccCCHHHHHHHH
Confidence 999999998 5889999999998732222333 3455666666665442 2345679999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||+.+|+|||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+|++.|+++|++.
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998875 38999999999999865 99999999999999999999987
Q ss_pred ccCch
Q 003981 766 RKGQY 770 (782)
Q Consensus 766 ~~g~Y 770 (782)
....+
T Consensus 234 ~~~~~ 238 (275)
T 3gfo_A 234 EKEVI 238 (275)
T ss_dssp HHHHH
T ss_pred CHHHH
Confidence 64433
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.7e-50 Score=420.08 Aligned_cols=217 Identities=27% Similarity=0.428 Sum_probs=182.8
Q ss_pred EEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh----
Q 003981 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW---- 612 (782)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l---- 612 (782)
|+++||+|+|+.+. +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2469999999999999999999999999999999999999999999999999999998764
Q ss_pred hhceEEEcccCCCCcc-cHHHHHHcCCC---CCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHH
Q 003981 613 ARVVSIVNQEPVLFSV-SVGENIAYGLP---DENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQR 684 (782)
Q Consensus 613 R~~Ia~V~Q~~~LF~g-TIreNI~~G~p---~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQr 684 (782)
|++|+||+|++.+|.. |++|||.++.. ....+. +++.++++..++.+.. .......||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 4579999999999987 99999987421 001222 3344555555554321 1345678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFE 762 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~e 762 (782)
||++|||||+.+|+|||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++..+.||+|++|++|+|++.|+.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999998753 899999999999888899999999999999998776
Q ss_pred HH
Q 003981 763 LL 764 (782)
Q Consensus 763 Ll 764 (782)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=8.3e-50 Score=436.05 Aligned_cols=221 Identities=32% Similarity=0.444 Sum_probs=192.1
Q ss_pred ccEEEEeeEEEcCCCC-CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh--
Q 003981 536 GDICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-- 612 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~-~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l-- 612 (782)
.-|+++||+++|+.+. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+..++..++
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999997421 2469999999999999999999999999999999999999999999999999999987654
Q ss_pred -hhceEEEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHH
Q 003981 613 -ARVVSIVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQR 686 (782)
Q Consensus 613 -R~~Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQR 686 (782)
|+.||||+|++.+|.. ||+|||.|+......+ ++++.++++.+++.++.. ....+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-----------CCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHH
Confidence 7899999999999875 9999999862111123 245667777777766533 3446899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHH
Q 003981 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 687 IaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eL 763 (782)
++|||||+.+|+|||||||||+||+.+.+.|.+.|+++. .|+|+|+|||+++.+.. ||+|+||++|+|++.|+++|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999875 38999999999999876 999999999999999999999
Q ss_pred Hhcc
Q 003981 764 LARK 767 (782)
Q Consensus 764 l~~~ 767 (782)
....
T Consensus 252 ~~~p 255 (366)
T 3tui_C 252 FSHP 255 (366)
T ss_dssp HSSC
T ss_pred HhCC
Confidence 8753
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-49 Score=413.79 Aligned_cols=220 Identities=24% Similarity=0.391 Sum_probs=188.4
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh-hhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~ 615 (782)
-|+++||+|+|+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.+...+ |+.
T Consensus 6 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEEC---CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 389999999996 3579999999999999999999999999999999999999999999999999998887665 456
Q ss_pred eEEEcccCCCCcc-cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 616 VSIVNQEPVLFSV-SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 616 Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
|+||+|++.+|.+ |++|||.++.. ...+.++..+.+ .+.++.++ |++........+||||||||++|||||+
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~ 155 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999987 99999999741 112222332222 22334443 4555566778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
.+|+|||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+ +.||+|++|++|+|++.|+++++.+.
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999998875 689999999999876 56999999999999999999999754
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.4e-49 Score=416.47 Aligned_cols=216 Identities=27% Similarity=0.431 Sum_probs=191.9
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++||+++|+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.+...+++.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 489999999996 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCC-CcccHHHHHHcCCCC--CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 617 SIVNQEPVL-FSVSVGENIAYGLPD--ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 617 a~V~Q~~~L-F~gTIreNI~~G~p~--~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
+||+|++.+ |+.|++|||.++... ....++++.++++..++.++..+ ...+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-----------DYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-----------BGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 999999987 678999999997421 12235667788888777654322 2357999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHH
Q 003981 694 LK------NAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 694 lr------~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
+. +|+|||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988753 579999999999986 59999999999999999999997
Q ss_pred hc
Q 003981 765 AR 766 (782)
Q Consensus 765 ~~ 766 (782)
..
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=7.3e-49 Score=413.72 Aligned_cols=217 Identities=28% Similarity=0.392 Sum_probs=188.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC--CCChHhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR--TFDKSEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~--~i~~~~lR~ 614 (782)
-|+++||+|+|+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 499999999995 357999999999999999999999999999999999999999999999999985 345567888
Q ss_pred ceEEEcccCCCCcc-cHHHHHHcCC-CCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 615 VVSIVNQEPVLFSV-SVGENIAYGL-PDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~g-TIreNI~~G~-p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
+|+||+|++.+|.. |++|||.++. .....+ ++++.++++..++.++. .....+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKA-----------HAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHHH
Confidence 99999999999986 9999999852 111122 34566677777665542 3345689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|||||+.+|+|||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998874 4899999999999986 4999999999999999999999875
Q ss_pred c
Q 003981 767 K 767 (782)
Q Consensus 767 ~ 767 (782)
.
T Consensus 250 ~ 250 (263)
T 2olj_A 250 P 250 (263)
T ss_dssp C
T ss_pred c
Confidence 4
No 25
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.4e-49 Score=420.92 Aligned_cols=216 Identities=26% Similarity=0.450 Sum_probs=182.8
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
+.|+++||+|.| .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~------------- 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------- 100 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSC-------------
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE-------------
Confidence 469999999964 26899999999999999999999999999999999999999999999993
Q ss_pred eEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 616 VSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 616 Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
|+||+|++.+|++|++|||. +.. ..+.++.++++.+++.+++..+|++++|.+++++.+||||||||++|||||++
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~ 176 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVS---YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 176 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTC---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHS
T ss_pred EEEEeCCCccCcccHHHHhh-Ccc---cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999 632 34556677888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhccCchHHH
Q 003981 696 NAPILILDEATSALDAVSERLVQDAL-NHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLARKGQYASL 773 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L-~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~~g~Y~~L 773 (782)
+|+|||||||||+||+.+++.+.+.+ +++.+++|+|+|||++..+..||+|++|++|+|++.|+++|+++....|.+.
T Consensus 177 ~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 255 (290)
T 2bbs_A 177 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSK 255 (290)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHHHH
Confidence 99999999999999999999999874 4555689999999999999899999999999999999999998755555443
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-48 Score=409.90 Aligned_cols=216 Identities=29% Similarity=0.427 Sum_probs=189.8
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
+.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 4699999999995 3579999999999999999999999999999999999999999999999999976 56678899
Q ss_pred eEEEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 616 VSIVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 616 Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
|+||+|++.+|.+ |++|||.++......+ ++++.++++..++.++.. ....+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHH
Confidence 9999999999887 9999998752100122 245677777777766532 23467999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+.+.
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999998875 58999999999999977 999999999999999999999753
No 27
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.1e-48 Score=424.86 Aligned_cols=217 Identities=29% Similarity=0.480 Sum_probs=187.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC--CChHhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT--FDKSEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~--i~~~~lR~ 614 (782)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ .+....++
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 389999999995 4579999999999999999999999999999999999999999999999999833 23345678
Q ss_pred ceEEEcccCCCCc-ccHHHHHHcCCCCCCC----CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 003981 615 VVSIVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~----s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
+|+||+|++.||. -||+|||.|+...... .++++.++++..++.++..+. ...||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~-----------~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRY-----------PHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSC-----------GGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHH
Confidence 8999999999996 5999999998432112 234677788888777654433 35799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 690 ARALLKNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
||||+.+|+|||||||||+||+.+...+.+.|.++. .|+|+|+|||+++.+.. ||+|+||++|+|++.|+++|+.++
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999988776653 48999999999998754 999999999999999999999876
Q ss_pred c
Q 003981 767 K 767 (782)
Q Consensus 767 ~ 767 (782)
.
T Consensus 230 p 230 (359)
T 3fvq_A 230 P 230 (359)
T ss_dssp C
T ss_pred c
Confidence 4
No 28
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-48 Score=411.20 Aligned_cols=216 Identities=27% Similarity=0.440 Sum_probs=190.6
Q ss_pred EEEEeeEEEcCCCCC--ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 538 ICLEDVYFSYPLRPD--VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~--~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
|+++||+|+|+.+.. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 5799999999999999999999999999999999999999999999999998642 67889
Q ss_pred eEEEcccC--CCCcccHHHHHHcCCCC---CCCCHHHHHHHHHHhcch--hHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 616 VSIVNQEP--VLFSVSVGENIAYGLPD---ENVSKDDIIKAAKAANAH--DFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 616 Ia~V~Q~~--~LF~gTIreNI~~G~p~---~~~s~eei~~A~~~a~l~--dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
|+||+|+| .+|+.|++|||.++... ....++++.++++..++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 57889999999987421 122357788999999987 7655443 679999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
|||||+.+|+|||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999874 58999999999999876 999999999999999999999865
Q ss_pred c
Q 003981 767 K 767 (782)
Q Consensus 767 ~ 767 (782)
.
T Consensus 229 ~ 229 (266)
T 2yz2_A 229 Y 229 (266)
T ss_dssp S
T ss_pred c
Confidence 3
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-48 Score=409.44 Aligned_cols=218 Identities=28% Similarity=0.418 Sum_probs=188.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC----------
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT---------- 606 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~---------- 606 (782)
.|+++||+|+|+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 389999999995 3579999999999999999999999999999999999999999999999999862
Q ss_pred CCh---HhhhhceEEEcccCCCCcc-cHHHHHHcCC-CCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCC
Q 003981 607 FDK---SEWARVVSIVNQEPVLFSV-SVGENIAYGL-PDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGG 677 (782)
Q Consensus 607 i~~---~~lR~~Ia~V~Q~~~LF~g-TIreNI~~G~-p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~ 677 (782)
++. ..+|++|+||+|++.+|.. |++|||.++. .....+ ++++.++++..++.+++ ......
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~ 152 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPV 152 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCcc
Confidence 443 3568899999999999976 9999999852 111122 34567777777776652 123446
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEE
Q 003981 678 LLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIA 755 (782)
Q Consensus 678 ~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Iv 755 (782)
+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|+|+
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 799999999999999999999999999999999999999999998875 4899999999999986 59999999999999
Q ss_pred EecCHHHHHhcc
Q 003981 756 ELGTHFELLARK 767 (782)
Q Consensus 756 e~Gth~eLl~~~ 767 (782)
+.|+++++.+..
T Consensus 233 ~~g~~~~~~~~~ 244 (262)
T 1b0u_A 233 EEGDPEQVFGNP 244 (262)
T ss_dssp EEECHHHHHHSC
T ss_pred EeCCHHHHHhCc
Confidence 999999998653
No 30
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.7e-48 Score=402.21 Aligned_cols=208 Identities=26% Similarity=0.375 Sum_probs=180.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh---hh-
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---WA- 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~---lR- 613 (782)
|+++|++|+|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 5 l~~~~l~~~y~---~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEeEEEEEC---CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 89999999996 357999999999999999999999999999999999999999999999999998887653 34
Q ss_pred hceEEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
++|+||+|++.+|. .|++|||.++......+ ++++.++++..++.++. .....+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-----------SRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 78999999999986 59999998852111112 34456666666655432 2344689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEEeCCEEEEecC
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGT 759 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gt 759 (782)
|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.++.||+|++|++|+|++.|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999998874 5899999999999988899999999999999986
No 31
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.6e-48 Score=426.89 Aligned_cols=215 Identities=30% Similarity=0.482 Sum_probs=188.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. ++.|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 389999999996 45799999999999999999999999999999999999999999999999999988765 4679
Q ss_pred EEEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
+||+|++.||.. ||+|||.||......+ ++++.++++..++.++..+ ...+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTC-----------CGGGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhHCCHHHHHHHHHHH
Confidence 999999999965 9999999873211223 3456677777777665433 34579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
||+.+|+|||||||||+||+.++..+.+.|+++.+ |+|+|+|||++..+. -||+|+||++|+|++.|+++|+....
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 99999999999999999999999999999988753 899999999999875 49999999999999999999998764
No 32
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=6.3e-48 Score=406.15 Aligned_cols=212 Identities=25% Similarity=0.387 Sum_probs=182.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh-Hhhhhc
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARV 615 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~ 615 (782)
-|+++||+|+|+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.+. ..+|+.
T Consensus 7 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEEC---CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 389999999996 3579999999999999999999999999999999999999999999999999988765 346788
Q ss_pred eEEEcccCCCCc-ccHHHHHHcCCCC--CC-----------CC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCC
Q 003981 616 VSIVNQEPVLFS-VSVGENIAYGLPD--EN-----------VS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGG 677 (782)
Q Consensus 616 Ia~V~Q~~~LF~-gTIreNI~~G~p~--~~-----------~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~ 677 (782)
|+||+|++.+|. .|++|||.++... .. .+ .+++.++++..+ ++........
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK-----------LSHLYDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTT-----------CGGGTTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcC-----------CchhhCCCch
Confidence 999999999986 6999999987321 01 11 123444444444 4444455667
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHH-hcCeEEEEeCCEEE
Q 003981 678 LLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQ-NAHQIALCSDGRIA 755 (782)
Q Consensus 678 ~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~-~aD~IiVLd~G~Iv 755 (782)
+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|+|+
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998875 4899999999999885 59999999999999
Q ss_pred EecCHHH
Q 003981 756 ELGTHFE 762 (782)
Q Consensus 756 e~Gth~e 762 (782)
+.|+++|
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999999
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-47 Score=420.39 Aligned_cols=214 Identities=31% Similarity=0.488 Sum_probs=190.2
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. +++|+
T Consensus 4 l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 4 IRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 89999999995 35799999999999999999999999999999999999999999999999999887754 67899
Q ss_pred EEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|.. |++|||.|+......+ ++++.++++..++.++..+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999964 9999999974221122 346788888888877655444 5799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|+||++|+|++.|+++|+.++.
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999988753 89999999999987 459999999999999999999998764
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.1e-47 Score=419.46 Aligned_cols=217 Identities=27% Similarity=0.475 Sum_probs=189.8
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
..|+++||+++|++ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+. .+++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 35999999999941 3469999999999999999999999999999999999999999999999999987654 4788
Q ss_pred eEEEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 616 VSIVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 616 Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
|+||+|++.+|.. |++|||.|+......+ ++++.++++..++.++..+.| .+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 9999999999974 9999999863111122 356778888888877654443 57999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|||+.+|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+.++.
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 8999999999998754 9999999999999999999998753
No 35
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=9e-48 Score=421.54 Aligned_cols=214 Identities=36% Similarity=0.520 Sum_probs=188.4
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. +++|+
T Consensus 4 l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 4 IKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp EEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 89999999995 35799999999999999999999999999999999999999999999999999887754 57899
Q ss_pred EEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
||+|++.+|.. |++|||.|+......+ ++++.++++..++.++..+.| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999999863111122 345777888887776644433 5799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
|+.+|+|||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+ ..||+|+||++|+|++.|+++|+.++.
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999988753 89999999999987 459999999999999999999998764
No 36
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.9e-48 Score=411.02 Aligned_cols=216 Identities=23% Similarity=0.340 Sum_probs=186.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC--CCChHhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR--TFDKSEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~--~i~~~~lR~ 614 (782)
.|+++||+|+|+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~---~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEEC---CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 499999999996 357999999999999999999999999999999999999999999999999998 778888999
Q ss_pred ceEEEcccCCC-Ccc--cHHHHHHcCCCC-----CCCC---HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 615 VVSIVNQEPVL-FSV--SVGENIAYGLPD-----ENVS---KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 615 ~Ia~V~Q~~~L-F~g--TIreNI~~G~p~-----~~~s---~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
+|+||+|++.+ |.. |++|||.++... ...+ .+++.++++..++.++. .....+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-----------QQYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHH
Confidence 99999999875 555 999999987310 0112 23456666666665442 33456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEE--EEEecChhHHH-hcCeEEEEeCCEEEEecC
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTT--LVIAHRLSTVQ-NAHQIALCSDGRIAELGT 759 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTv--IvIaHRLsti~-~aD~IiVLd~G~Ive~Gt 759 (782)
|||++|||||+.+|+|||||||||+||+.+++.+.+.|+++.+ |+|+ |+|||+++.+. .||+|++|++|+|++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999988754 8999 99999999884 599999999999999999
Q ss_pred HHHHHhc
Q 003981 760 HFELLAR 766 (782)
Q Consensus 760 h~eLl~~ 766 (782)
++|+.+.
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9998753
No 37
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-47 Score=399.71 Aligned_cols=211 Identities=28% Similarity=0.430 Sum_probs=182.4
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+|+|+ + +|+||||+|++ |++||+||||||||||+++|+|+++|++|+|.++|+++.+.+ .+|++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999995 2 59999999999 999999999999999999999999999999999999997643 4578899
Q ss_pred EEcccCCCCcc-cHHHHHHcCCCCCCC--CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLPDENV--SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p~~~~--s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
||+|++.+|.. |++|||.++...... .++++.++++..++.++.. ....+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-----------RKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-----------CCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 99999999986 999999997421111 1345666666666655432 334579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
.+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|+|++.|+++|+.+..
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999999988753 899999999999874 59999999999999999999998754
No 38
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1e-47 Score=420.82 Aligned_cols=216 Identities=27% Similarity=0.425 Sum_probs=189.1
Q ss_pred EEEEeeEEEcCCCCCcc--ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC---hHhh
Q 003981 538 ICLEDVYFSYPLRPDVV--ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD---KSEW 612 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~--vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~---~~~l 612 (782)
|+++||+++|+ +.+ +|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+ ....
T Consensus 4 l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 89999999995 346 999999999999999999999999999999999999999999999999986621 3345
Q ss_pred hhceEEEcccCCCCcc-cHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 613 ARVVSIVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 613 R~~Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
+++|+||+|++.+|.. |++|||.|+......+ ++++.++++..++.++..+.| .+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHH
Confidence 7889999999999975 9999999974321223 345778888888877654443 57999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHHH
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eLl 764 (782)
+|||||+.+|+|||||||||+||+.+.+.+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|+|++.|+++|+.
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988753 899999999999875 59999999999999999999998
Q ss_pred hcc
Q 003981 765 ARK 767 (782)
Q Consensus 765 ~~~ 767 (782)
++.
T Consensus 230 ~~p 232 (353)
T 1oxx_K 230 DNP 232 (353)
T ss_dssp HSC
T ss_pred hCc
Confidence 764
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3e-47 Score=418.82 Aligned_cols=215 Identities=32% Similarity=0.499 Sum_probs=184.2
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 399999999995 35799999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEcccCCCCc-ccHHHHHHcCCCCCCCCH----HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 617 SIVNQEPVLFS-VSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 617 a~V~Q~~~LF~-gTIreNI~~G~p~~~~s~----eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
+||+|++.||. -|++|||.|+......+. +++.++++..++.++..+.| .+||||||||++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999999843212232 45777888888777654443 689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 692 ALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 692 ALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999988753 79999999999987 459999999999999999999998764
No 40
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.8e-47 Score=400.14 Aligned_cols=208 Identities=26% Similarity=0.373 Sum_probs=189.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+|+ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++.+.+...+|++|+
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 4899999999999999999999999999999999999999 99999999999888889999999
Q ss_pred EEcccCCCCcc-cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
||+|++.+|.+ |++|||.++.. ...+++++.++++..++.++.. ....+||||||||++|||||+++
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQH-DKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCS-STTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCccCCCCcHHHHHHHhhc-cCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcC
Confidence 99999999875 99999999742 1224778888888888876532 34568999999999999999999
Q ss_pred CC-------EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHh
Q 003981 697 AP-------ILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 697 p~-------ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|+ |||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+ +.||+|++|++|+|++.|+++|+.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999999874 589999999999998 5699999999999999999999975
No 41
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.5e-47 Score=416.19 Aligned_cols=213 Identities=31% Similarity=0.491 Sum_probs=188.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+++|+ +. +|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 34 9999999999999999999999999999999999999999999999999987654 478899
Q ss_pred EEcccCCCCcc-cHHHHHHcCCCC-CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 618 IVNQEPVLFSV-SVGENIAYGLPD-ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 618 ~V~Q~~~LF~g-TIreNI~~G~p~-~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
||+|++.+|.. |++|||.|+... ....++++.++++..++.++..+.| .+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 99999999976 999999986310 0012377888888888877644433 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHhcc
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLARK 767 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~~~ 767 (782)
+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++.
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999999988753 89999999999876 559999999999999999999998754
No 42
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2e-47 Score=400.77 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=175.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCCChHhh-hh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--YEPTGGRITVGGEDLRTFDKSEW-AR 614 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl--y~p~~G~I~idG~di~~i~~~~l-R~ 614 (782)
|+++||+|+|+ +.++|+||||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |.
T Consensus 4 l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASID---GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEEC---CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 89999999996 35799999999999999999999999999999999999 89999999999999998887665 45
Q ss_pred ceEEEcccCCCCcc-cHHHHHHcCCC---CCCCC----HHHHHHHHHHhcch-hHHHhCCCCccccccCCCCC-CChhHH
Q 003981 615 VVSIVNQEPVLFSV-SVGENIAYGLP---DENVS----KDDIIKAAKAANAH-DFIISLPQGYDTLVGERGGL-LSGGQR 684 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~g-TIreNI~~G~p---~~~~s----~eei~~A~~~a~l~-dfI~~LP~GldT~VGE~G~~-LSGGQr 684 (782)
.++||+|++.+|.+ |++||+.++.. ..... .+++.++++..++. ++. +..+ .. ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~~----~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-------SRYL----NEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-------GSBT----TCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-------cCCc----ccCCCHHHH
Confidence 69999999999985 99999987521 00111 23455666665552 322 2222 34 999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh--cCeEEEEeCCEEEEecCHH
Q 003981 685 QRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN--AHQIALCSDGRIAELGTHF 761 (782)
Q Consensus 685 QRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~--aD~IiVLd~G~Ive~Gth~ 761 (782)
||++|||||+++|+|||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999999885 48999999999999886 5999999999999999988
Q ss_pred H
Q 003981 762 E 762 (782)
Q Consensus 762 e 762 (782)
+
T Consensus 230 ~ 230 (250)
T 2d2e_A 230 L 230 (250)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5e-47 Score=417.79 Aligned_cols=214 Identities=28% Similarity=0.471 Sum_probs=187.3
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC------CChHh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT------FDKSE 611 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~------i~~~~ 611 (782)
|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ .+.
T Consensus 4 l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 89999999995 3579999999999999999999999999999999999999999999999999876 554
Q ss_pred hhhceEEEcccCCCCc-ccHHHHHHcCCCCCCCC----HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHH
Q 003981 612 WARVVSIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQR 686 (782)
Q Consensus 612 lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s----~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQR 686 (782)
.+++|+||+|++.+|. .|++|||.|+......+ ++++.++++..++.++..+.| .+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHHH
Confidence 3678999999999996 69999999863111122 345777888888776644333 5799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHH-hcCeEEEEeCCEEEEecCHHHH
Q 003981 687 IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQ-NAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 687 IaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~-~aD~IiVLd~G~Ive~Gth~eL 763 (782)
++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||++..+. .||+|+||++|+|++.|+++|+
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 899999999999875 5999999999999999999999
Q ss_pred Hhcc
Q 003981 764 LARK 767 (782)
Q Consensus 764 l~~~ 767 (782)
..+.
T Consensus 228 ~~~p 231 (372)
T 1g29_1 228 YDKP 231 (372)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8764
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.4e-46 Score=397.78 Aligned_cols=215 Identities=26% Similarity=0.355 Sum_probs=180.6
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCccEEEECCeeCCCCChHhh-h
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--YEPTGGRITVGGEDLRTFDKSEW-A 613 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl--y~p~~G~I~idG~di~~i~~~~l-R 613 (782)
.|+++||+|+|+ +.++|+||||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++.+++.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 35799999999999999999999999999999999999 67999999999999988887665 4
Q ss_pred hceEEEcccCCCCcc-cHHHHHHcCC-------CCCCCCHH----HHHHHHHHhcchhHHHhCCCCccccccCCC-C-CC
Q 003981 614 RVVSIVNQEPVLFSV-SVGENIAYGL-------PDENVSKD----DIIKAAKAANAHDFIISLPQGYDTLVGERG-G-LL 679 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~g-TIreNI~~G~-------p~~~~s~e----ei~~A~~~a~l~dfI~~LP~GldT~VGE~G-~-~L 679 (782)
..|+||+|++.+|.+ |++||+.++. ..+..+.+ ++.++++..++ ++.+.++- . +|
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~~L 165 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM-----------PEDLLTRSVNVGF 165 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTC-----------CTTTTTSBTTTTC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCC-----------ChhHhcCCcccCC
Confidence 569999999999876 8999997631 01112332 34444444443 22222332 2 59
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh--cCeEEEEeCCEEEE
Q 003981 680 SGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN--AHQIALCSDGRIAE 756 (782)
Q Consensus 680 SGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~--aD~IiVLd~G~Ive 756 (782)
|||||||++|||||+.+|+|||||||||+||+.+++.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 48999999999999876 89999999999999
Q ss_pred ecCHHHHHh
Q 003981 757 LGTHFELLA 765 (782)
Q Consensus 757 ~Gth~eLl~ 765 (782)
.|+++++..
T Consensus 246 ~g~~~~~~~ 254 (267)
T 2zu0_C 246 SGDFTLVKQ 254 (267)
T ss_dssp EECTTHHHH
T ss_pred EcCHHHHhh
Confidence 999998753
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.6e-46 Score=394.23 Aligned_cols=210 Identities=20% Similarity=0.284 Sum_probs=183.2
Q ss_pred EEEEeeEEEcCCC-CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 538 ICLEDVYFSYPLR-PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~-~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
|+++||+++|++. ...++|+|+||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|+++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999621 01579999999999 9999999999999999999999999 9999999999998765 33 7889
Q ss_pred E-EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcch-hHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 617 S-IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAH-DFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 617 a-~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~-dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+ ||+|++.+ +.|++|||.++.+..+..++++.++++..++. ++ ......+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-----------LRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGG-----------GGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999999 99999999986321124567777887776665 43 34556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hcC-eEEEEeCCEEEEecCHHHHHhc
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NAH-QIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~aD-~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
.+|+|||||||||+||+.+++.+.+.|+++.+ |+|+|||++..+. .|| +|++|++|++++.|+++|+.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999998754 9999999999875 699 9999999999999999999854
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5.9e-46 Score=389.88 Aligned_cols=202 Identities=28% Similarity=0.375 Sum_probs=176.1
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
|+++||+|+|+. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. +++.|+
T Consensus 5 l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 5 LSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred EEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 899999999961 35799999999999999999999999999999999999999999998 356799
Q ss_pred EEcccCCCC-cccHHHHHHcCCCC--------CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 618 IVNQEPVLF-SVSVGENIAYGLPD--------ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 618 ~V~Q~~~LF-~gTIreNI~~G~p~--------~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
||+|++.+| +.|++|||.++... ....++++.++++..++.++.. ....+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHH
Confidence 999999988 67999999987310 0111345777887777766533 245689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHH-HhcCeEEEEeCCEEEEecCHHHHHh
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTV-QNAHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti-~~aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
|||||+.+|+|||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|+ ++.|+++|+.+
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999999999988753 89999999999998 5699999999999 99999999865
Q ss_pred c
Q 003981 766 R 766 (782)
Q Consensus 766 ~ 766 (782)
.
T Consensus 218 ~ 218 (253)
T 2nq2_C 218 S 218 (253)
T ss_dssp H
T ss_pred c
Confidence 3
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6e-45 Score=372.32 Aligned_cols=198 Identities=21% Similarity=0.348 Sum_probs=169.1
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.|+++||+++|+ + ++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 7999999999999999999999999999999999999999999999999886 368899
Q ss_pred EEEcccCCCCcc-cHHHHHHcCCC-CC-CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 617 SIVNQEPVLFSV-SVGENIAYGLP-DE-NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 617 a~V~Q~~~LF~g-TIreNI~~G~p-~~-~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
+||+|++.+|.+ |++|||.++.. .. ...++++.++++..++. .. .....+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-----------DL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-----------CT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-----------cC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999986 99999988621 00 12356677777666543 33 456778999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEEeCCEEE
Q 003981 694 LKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALCSDGRIA 755 (782)
Q Consensus 694 lr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVLd~G~Iv 755 (782)
+++|++||||||||+||+.+++.+.+.|+++. +++|+|++||++..+..++..+|+.+|+|-
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 99999999999999999999999999998875 478999999999999885555567778774
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=2.3e-44 Score=385.42 Aligned_cols=238 Identities=15% Similarity=0.144 Sum_probs=198.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhcccccccccccchhhhhhhhhccC
Q 003981 428 GELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDG 507 (782)
Q Consensus 428 g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~l~~a~~s~~RI~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (782)
+..+-+.+.+|+.+..+ ..|+..+...+..++++.++.+||.++++.+++... . .
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~-----------~---~---------- 92 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT-----------G---E---------- 92 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC-----------S---S----------
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-----------C---C----------
Confidence 55677888899888777 589999999999999999999999999975321000 0 0
Q ss_pred CCCcccccchhhhhhcccccccCCCCCcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHH
Q 003981 508 SNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA 587 (782)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~ 587 (782)
.......+.|+++||+|+|+ .++|+||||+|++|+++|||||||||||||+++|+
T Consensus 93 ---------------------~~~~~~~~~i~~~~vs~~y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 93 ---------------------GSWKSILTFFNYQNIELITF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp ---------------------CCTHHHHHHHHHTTCCHHHH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHH
T ss_pred ---------------------CcccccCCeEEEEEEEEEcC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHh
Confidence 00000123588999999995 47999999999999999999999999999999999
Q ss_pred cCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHH-HHHcCCCCCCCCHHHHHHHHHHhcchhHHHh-CC
Q 003981 588 RFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE-NIAYGLPDENVSKDDIIKAAKAANAHDFIIS-LP 665 (782)
Q Consensus 588 gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIre-NI~~G~p~~~~s~eei~~A~~~a~l~dfI~~-LP 665 (782)
|+| +|+| ++||+|++++|++|++| ||.|+ + ++++ +++++|.. ||
T Consensus 148 gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~-~--~~~~----------~~~~~i~~~L~ 193 (305)
T 2v9p_A 148 HFL---GGSV------------------LSFANHKSHFWLASLADTRAALV-D--DATH----------ACWRYFDTYLR 193 (305)
T ss_dssp HHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEE-E--EECH----------HHHHHHHHTTT
T ss_pred hhc---CceE------------------EEEecCccccccccHHHHhhccC-c--cccH----------HHHHHHHHHhH
Confidence 999 8998 56899999999999998 99997 2 3443 34677888 99
Q ss_pred CCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCe
Q 003981 666 QGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQ 745 (782)
Q Consensus 666 ~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~ 745 (782)
+|+| |.+|||||||| |||++++|+||| ||+||+.+|+.|.+ +|||+++++.||+
T Consensus 194 ~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~ 247 (305)
T 2v9p_A 194 NALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------------LHSRVQTFRFEQP 247 (305)
T ss_dssp GGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-------------GTTTEEEEECCCC
T ss_pred ccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-------------HhCCHHHHHhCCE
Confidence 9998 78999999999 999999999999 99999999998862 3999999999999
Q ss_pred EEEEeCCEEEEecCHHHHHhccCchHHHHHHhhh
Q 003981 746 IALCSDGRIAELGTHFELLARKGQYASLVCTQRL 779 (782)
Q Consensus 746 IiVLd~G~Ive~Gth~eLl~~~g~Y~~L~~~q~~ 779 (782)
| ||++|+|++.|+|+|| ++.|+++|..|..
T Consensus 248 i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~~ 277 (305)
T 2v9p_A 248 C-TDESGEQPFNITDADW---KSFFVRLWGRLDL 277 (305)
T ss_dssp C-CCC---CCCCCCHHHH---HHHHHHSTTTTTC
T ss_pred E-EEeCCEEEEeCCHHHH---HHHHHHHHHHccc
Confidence 9 9999999999999999 7889999887654
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5e-36 Score=346.45 Aligned_cols=200 Identities=27% Similarity=0.320 Sum_probs=166.2
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.++++|++++|. + ..|+++||+|++||++||+||+|||||||+++|+|+++|++|+|.++ ..|
T Consensus 287 ~l~~~~l~~~~~---~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYG---S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEET---T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEEC---C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 489999999995 2 36999999999999999999999999999999999999999999862 359
Q ss_pred EEEcccCCC-CcccHHHHHHcC-CCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 617 SIVNQEPVL-FSVSVGENIAYG-LPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 617 a~V~Q~~~L-F~gTIreNI~~G-~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+||+|++.+ ++.||.||+... .+. ....+.+.++++..++. .........||||||||++|||||+
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGe~qrv~lAraL~ 417 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASK-LNSNFYKTELLKPLGII-----------DLYDREVNELSGGELQRVAIAATLL 417 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHH-HTCHHHHHHTTTTTTCG-----------GGTTSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccC-CCHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999976 678999998753 110 01133344444333332 2233445679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeC--CEEEEecCHHHHHh
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSD--GRIAELGTHFELLA 765 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~--G~Ive~Gth~eLl~ 765 (782)
.+|+||||||||++||..+...|.+.|+++. .++|+|+|||.+..+.. ||+|+||++ |++++.|+.++++.
T Consensus 418 ~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999999875 48999999999999865 999999996 88888999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-35 Score=342.26 Aligned_cols=201 Identities=22% Similarity=0.270 Sum_probs=166.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .|
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------IL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------ee
Confidence 4889999999952 4688999999999999999999999999999999999999999998764 48
Q ss_pred EEEcccCCC-CcccHHHHHHcCCCCC-CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 617 SIVNQEPVL-FSVSVGENIAYGLPDE-NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 617 a~V~Q~~~L-F~gTIreNI~~G~p~~-~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+|++|++.. |..||+||+.+..... ....+.+.++++..++.++ ......+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-----------LESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-----------TTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 999999875 5899999998753211 1123345555555555443 23344679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeC--CEEEEecCHHHHH
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSD--GRIAELGTHFELL 764 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~--G~Ive~Gth~eLl 764 (782)
++|+||||||||++||+.+...|.+.|+++. .++|+|+|||++..+.. ||+|+||++ |.+...|+..++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999999875 48999999999999876 999999987 5566667655543
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=7.4e-36 Score=348.61 Aligned_cols=200 Identities=28% Similarity=0.331 Sum_probs=168.3
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
.++++|++++|.+ ..|+++||+|++||++||+||+|||||||+++|+|+++|++|+|.++ ..|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 4899999999952 36999999999999999999999999999999999999999999862 359
Q ss_pred EEEcccCCC-CcccHHHHHHcC-CCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 617 SIVNQEPVL-FSVSVGENIAYG-LPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 617 a~V~Q~~~L-F~gTIreNI~~G-~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+||+|++.+ ++.|++||+.+. .+. ....+.+.++++..++.++ .+. ...+||||||||++|||||+
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~-~~~~~~~~~~l~~~~l~~~-------~~~----~~~~LSGGe~QRv~iAraL~ 487 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSK-LNSNFYKTELLKPLGIIDL-------YDR----NVEDLSGGELQRVAIAATLL 487 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHH-HHCHHHHHHTHHHHTCTTT-------TTS----BGGGCCHHHHHHHHHHHHHT
T ss_pred EEEecCccCCCCCcHHHHHHhhhccC-CCHHHHHHHHHHHcCCchH-------hcC----ChhhCCHHHHHHHHHHHHHH
Confidence 999999876 678999999764 110 0123445556655555432 233 34579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeC--CEEEEecCHHHHHh
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSD--GRIAELGTHFELLA 765 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~--G~Ive~Gth~eLl~ 765 (782)
++|+||||||||++||..+...+.+.|+++. .++|+|+|||.+..+.. ||+|++|++ |++++.|++++++.
T Consensus 488 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999999874 58999999999999865 999999996 88888999988865
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=8.1e-36 Score=359.42 Aligned_cols=198 Identities=22% Similarity=0.340 Sum_probs=155.1
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhce
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 616 (782)
-|+++||+|+|+++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 39999999999742 357999999999999999999999999999999999999999999999873 138
Q ss_pred EEEcccCCC-----CcccHHHHHHc-------------------------------------------------------
Q 003981 617 SIVNQEPVL-----FSVSVGENIAY------------------------------------------------------- 636 (782)
Q Consensus 617 a~V~Q~~~L-----F~gTIreNI~~------------------------------------------------------- 636 (782)
+||+|++.. ++.|+++||.+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 888887632 23455555532
Q ss_pred -----------CCC---------------------------------------CCCCCHHHHHHHHHHhcchhHHHhCCC
Q 003981 637 -----------GLP---------------------------------------DENVSKDDIIKAAKAANAHDFIISLPQ 666 (782)
Q Consensus 637 -----------G~p---------------------------------------~~~~s~eei~~A~~~a~l~dfI~~LP~ 666 (782)
+.+ .....++++.++++..+
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lG---------- 888 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLG---------- 888 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTT----------
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcC----------
Confidence 100 00011233333333333
Q ss_pred Cccccc--cCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHH-hc
Q 003981 667 GYDTLV--GERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQ-NA 743 (782)
Q Consensus 667 GldT~V--GE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~-~a 743 (782)
++... .....+||||||||++|||||+.+|+||||||||++||..+...+.+.|+++ ++|+|+|||++..+. .|
T Consensus 889 -L~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~ 965 (986)
T 2iw3_A 889 -LDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLT 965 (986)
T ss_dssp -CCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTC
T ss_pred -CCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhC
Confidence 33321 3345689999999999999999999999999999999999999999999875 579999999999985 49
Q ss_pred CeEEEEeCCEEEEecC
Q 003981 744 HQIALCSDGRIAELGT 759 (782)
Q Consensus 744 D~IiVLd~G~Ive~Gt 759 (782)
|+|++|++|+|++.|+
T Consensus 966 DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 966 EEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CEEECCBTTBCCC---
T ss_pred CEEEEEECCEEEEeCC
Confidence 9999999999998775
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-35 Score=338.54 Aligned_cols=200 Identities=24% Similarity=0.336 Sum_probs=167.0
Q ss_pred EeeEEEcCCCCCccceeeeeEEEeCC-----cEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 541 EDVYFSYPLRPDVVILNGLNLTLKSG-----SVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 541 ~nVsF~Y~~~~~~~vL~~Isl~I~~G-----e~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
++++|+|+. ...+++|+||++++| |.+||+||||||||||+++|+|+.+|++|+. +. +..
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 678899973 346899999999999 7899999999999999999999999999972 21 235
Q ss_pred eEEEcccCC-CCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 616 VSIVNQEPV-LFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 616 Ia~V~Q~~~-LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
++|++|+.. .|++|++||+...........+...++++..++.++. + ..-..||||||||++|||||.
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~----~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII-------D----QEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTS-------S----SBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhh-------c----CChhhCCHHHHHHHHHHHHHH
Confidence 999999975 5789999999754222223455566667666665432 2 334579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeC--CEEEEecCHHHHHhc
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSD--GRIAELGTHFELLAR 766 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~--G~Ive~Gth~eLl~~ 766 (782)
.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||.+..+.. ||||+||++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998874 48999999999999865 999999997 999999999999865
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.7e-34 Score=343.45 Aligned_cols=217 Identities=24% Similarity=0.318 Sum_probs=157.9
Q ss_pred eeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHH---------------------cCCCCCccEEEEC
Q 003981 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA---------------------RFYEPTGGRITVG 600 (782)
Q Consensus 542 nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~---------------------gly~p~~G~I~id 600 (782)
+..+.+.+ ....+|+||||+|++||++||+||||||||||+++|+ +-+.+.+|.|.++
T Consensus 325 ~~~~~~~~-~~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~ 403 (670)
T 3ux8_A 325 GRWLEVVG-AREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDID 403 (670)
T ss_dssp SCEEEEEE-ECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECC
T ss_pred ccceeecC-ccccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEec
Confidence 33444432 1346899999999999999999999999999998764 1223345789999
Q ss_pred CeeCCCCChHhhhhc-----------------------------------------eEEEcccCCCC-------------
Q 003981 601 GEDLRTFDKSEWARV-----------------------------------------VSIVNQEPVLF------------- 626 (782)
Q Consensus 601 G~di~~i~~~~lR~~-----------------------------------------Ia~V~Q~~~LF------------- 626 (782)
|.++...+....+.. .+++.|+..++
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~ 483 (670)
T 3ux8_A 404 QSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGK 483 (670)
T ss_dssp SSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTC
T ss_pred cccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCc
Confidence 998876543222111 23333332222
Q ss_pred --------------------cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHH
Q 003981 627 --------------------SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQR 686 (782)
Q Consensus 627 --------------------~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQR 686 (782)
.-|++||+.+... ....++..++++..++. + ........+||||||||
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~--~~~~~~~~~~l~~~~l~---------~-~~~~~~~~~LSgG~~qr 551 (670)
T 3ux8_A 484 RYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS--IPKIKRKLETLYDVGLG---------Y-MKLGQPATTLSGGEAQR 551 (670)
T ss_dssp CBCHHHHTCCBTTBCHHHHHTSBHHHHHHHTTT--CHHHHHHHHHHHHTTCT---------T-SBTTCCGGGCCHHHHHH
T ss_pred ccChhhhheeecCCCHHHHhhCCHHHHHHHHHH--hhhHHHHHHHHHHcCCc---------h-hhccCCchhCCHHHHHH
Confidence 3589999988632 11122333333322221 1 23456778899999999
Q ss_pred HHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEE------eCCEEEE
Q 003981 687 IAIARALLKNA---PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALC------SDGRIAE 756 (782)
Q Consensus 687 IaIARALlr~p---~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVL------d~G~Ive 756 (782)
++|||||+.+| +|||||||||+||+.+.+.|.+.|+++. +|+|+|+|||+++.++.||+|+|| ++|+|++
T Consensus 552 v~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~ 631 (670)
T 3ux8_A 552 VKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVA 631 (670)
T ss_dssp HHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEE
T ss_pred HHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEE
Confidence 99999999887 4999999999999999999999998875 589999999999999999999999 8999999
Q ss_pred ecCHHHHHhccCchH
Q 003981 757 LGTHFELLARKGQYA 771 (782)
Q Consensus 757 ~Gth~eLl~~~g~Y~ 771 (782)
.|+++|+.+....|.
T Consensus 632 ~g~~~~~~~~~~~~~ 646 (670)
T 3ux8_A 632 VGTPEEVAEVKESHT 646 (670)
T ss_dssp EECHHHHHTCTTCHH
T ss_pred ecCHHHHHhCCccHH
Confidence 999999987655543
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1e-34 Score=338.99 Aligned_cols=193 Identities=27% Similarity=0.351 Sum_probs=156.5
Q ss_pred EeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEE---------EECCeeCCCCChHh
Q 003981 541 EDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI---------TVGGEDLRTFDKSE 611 (782)
Q Consensus 541 ~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I---------~idG~di~~i~~~~ 611 (782)
+||+++|+. ...+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .++|.++.++....
T Consensus 95 ~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGV--NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECC--CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 899999963 225899999 999999999999999999999999999999999996 45666543321111
Q ss_pred --hhhceEEEcccC----CCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 612 --WARVVSIVNQEP----VLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 612 --lR~~Ia~V~Q~~----~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
.+..+++++|+. .++.+|++||+... + ..+++.++++..++.++. +..+ ..|||||||
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~--~---~~~~~~~~L~~lgL~~~~-------~~~~----~~LSGGekQ 235 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV--D---EVGKFEEVVKELELENVL-------DREL----HQLSGGELQ 235 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT--C---CSSCHHHHHHHTTCTTGG-------GSBG----GGCCHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhh--H---HHHHHHHHHHHcCCCchh-------CCCh----hhCCHHHHH
Confidence 234588888874 34567999999753 1 124566777777765542 3333 469999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCC
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDG 752 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G 752 (782)
|++|||||+.+|+|||||||||+||+.+...+.+.|+++. +|+|+|+|+|+++.+.. ||+|++|+++
T Consensus 236 RvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 236 RVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999999999999999999999999998875 48999999999998865 9999999865
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-34 Score=334.59 Aligned_cols=196 Identities=28% Similarity=0.344 Sum_probs=155.5
Q ss_pred EEE-EeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEE---------EECCeeCCCC
Q 003981 538 ICL-EDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI---------TVGGEDLRTF 607 (782)
Q Consensus 538 I~f-~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I---------~idG~di~~i 607 (782)
.++ +||+++|++ ...+|+||| +|++||++|||||||||||||+++|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGV--NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECC--ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 455 599999963 225899999 999999999999999999999999999999999996 4566654322
Q ss_pred ChHh--hhhceEEEcccCCC----CcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCCh
Q 003981 608 DKSE--WARVVSIVNQEPVL----FSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSG 681 (782)
Q Consensus 608 ~~~~--lR~~Ia~V~Q~~~L----F~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSG 681 (782)
.... .+..+++++|+..+ +.+|++||+.... ..+++.++++..++.++ .+..+ .+|||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-----~~~~~~~~l~~lgl~~~-------~~~~~----~~LSg 161 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-----ETGKLEEVVKALELENV-------LEREI----QHLSG 161 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-----SSSCHHHHHHHTTCTTT-------TTSBG----GGCCH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-----HHHHHHHHHHHcCCChh-------hhCCh----hhCCH
Confidence 1111 12458899987544 3469999997531 12456777777776543 23333 56999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHh-cCeEEEEeCC
Q 003981 682 GQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQN-AHQIALCSDG 752 (782)
Q Consensus 682 GQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~-aD~IiVLd~G 752 (782)
|||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +|+|+|+|+|++..+.. ||+|++|++|
T Consensus 162 GekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999999998874 48999999999999866 9999999865
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.9e-34 Score=340.24 Aligned_cols=209 Identities=23% Similarity=0.331 Sum_probs=138.6
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHH---------------------HHHHcCCCCC-------ccEEEECCee
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIV---------------------QLLARFYEPT-------GGRITVGGED 603 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl---------------------~LL~gly~p~-------~G~I~idG~d 603 (782)
...+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 8999999998 5566677765
Q ss_pred CCCCChHhhhhceEEEcccCCCC--------------------cccHHHHHHcCCCCCC-CCHHH-----HHHHHHHhcc
Q 003981 604 LRTFDKSEWARVVSIVNQEPVLF--------------------SVSVGENIAYGLPDEN-VSKDD-----IIKAAKAANA 657 (782)
Q Consensus 604 i~~i~~~~lR~~Ia~V~Q~~~LF--------------------~gTIreNI~~G~p~~~-~s~ee-----i~~A~~~a~l 657 (782)
+... .++.+++|+|.+.++ .-|++||+.+...... ..+.+ +.++.+..+
T Consensus 110 ~~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 184 (670)
T 3ux8_A 110 TSRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG- 184 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHHH-
T ss_pred hhcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH-
Confidence 5432 245566776655432 4599999987521100 00111 111111111
Q ss_pred hhHHHhCCCCcccc-ccCCCCCCChhHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEE
Q 003981 658 HDFIISLPQGYDTL-VGERGGLLSGGQRQRIAIARALLKNAP--ILILDEATSALDAVSERLVQDALNHLM-KGRTTLVI 733 (782)
Q Consensus 658 ~dfI~~LP~GldT~-VGE~G~~LSGGQrQRIaIARALlr~p~--ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvI 733 (782)
.+..+ |++.. .......||||||||++|||||+.+|+ |||||||||+||+.+...+.+.|+++. +|+|+|+|
T Consensus 185 --~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 185 --FLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVV 260 (670)
T ss_dssp --HHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred --HHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 12222 22211 123345799999999999999999998 999999999999999999999998874 58999999
Q ss_pred ecChhHHHhcCeEEEE------eCCEEEEecCHHHHHhccCc
Q 003981 734 AHRLSTVQNAHQIALC------SDGRIAELGTHFELLARKGQ 769 (782)
Q Consensus 734 aHRLsti~~aD~IiVL------d~G~Ive~Gth~eLl~~~g~ 769 (782)
||++..+..||+|++| ++|+|++.|+.+|+.+....
T Consensus 261 tHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~ 302 (670)
T 3ux8_A 261 EHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNS 302 (670)
T ss_dssp CCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTC
T ss_pred eCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchh
Confidence 9999999999999999 89999999999999876543
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=9.5e-33 Score=332.78 Aligned_cols=198 Identities=27% Similarity=0.377 Sum_probs=165.6
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
..+...|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... . ..
T Consensus 434 ~~L~~~~ls~~yg---~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~----~--~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYG---AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE----E--CR 496 (986)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT----T--SC
T ss_pred ceeEEeeEEEEEC---CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc----c--ee
Confidence 3588889999996 3579999999999999999999999999999999996 654 5654321 1 23
Q ss_pred eEEEcccC-CC-CcccHHHHHHcCCCCCCCCHHHHHHHHHHhcch-hHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 616 VSIVNQEP-VL-FSVSVGENIAYGLPDENVSKDDIIKAAKAANAH-DFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 616 Ia~V~Q~~-~L-F~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~-dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
++|++|++ .+ ..-|++||+.+. .... ++++.++++..++. ++.. ..+ ..||||||||++||||
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~--~~~~-~~~v~~~L~~lgL~~~~~~-------~~~----~~LSGGqkQRvaLArA 562 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFES--GVGT-KEAIKDKLIEFGFTDEMIA-------MPI----SALSGGWKMKLALARA 562 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTT--CSSC-HHHHHHHHHHTTCCHHHHH-------SBG----GGCCHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHh--hcCH-HHHHHHHHHHcCCChhhhc-------CCc----ccCCHHHHHHHHHHHH
Confidence 78999985 34 456999999862 1112 77888888888884 4432 222 4699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCEEE-EecCHHHHHhc
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGRIA-ELGTHFELLAR 766 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~Iv-e~Gth~eLl~~ 766 (782)
|+.+|+||||||||++||+.+.+.+.+.|++ .|+|+|+|||++..+.+ ||+|++|++|+|+ ..|+++++++.
T Consensus 563 L~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~ 636 (986)
T 2iw3_A 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636 (986)
T ss_dssp HHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhh
Confidence 9999999999999999999999999999988 68999999999999865 9999999999997 58999998754
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-33 Score=338.34 Aligned_cols=209 Identities=27% Similarity=0.404 Sum_probs=161.5
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHH---------HHHHcCCCCC------cc------EEEECCeeCCCCCh---
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIV---------QLLARFYEPT------GG------RITVGGEDLRTFDK--- 609 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl---------~LL~gly~p~------~G------~I~idG~di~~i~~--- 609 (782)
..|+||||+|++|++++|+|+||||||||+ +++.+...+. +| .|.+|+.++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 469999999999999999999999999997 4454444333 33 36666666543221
Q ss_pred -------Hhhh-------------------------------hceEEEcccCCCCc------------------------
Q 003981 610 -------SEWA-------------------------------RVVSIVNQEPVLFS------------------------ 627 (782)
Q Consensus 610 -------~~lR-------------------------------~~Ia~V~Q~~~LF~------------------------ 627 (782)
+.+| +..|++.|+..++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1111 23577777776553
Q ss_pred ---------ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC-
Q 003981 628 ---------VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA- 697 (782)
Q Consensus 628 ---------gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p- 697 (782)
.|++||+.|... ....++..++++.+++ || ..+|+.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~--~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN--IPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT--CHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCC
T ss_pred cCCHHHHhhCCHHHHHHHHhc--chhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHHHHHHHHHHHHhhCCC
Confidence 477777776532 1122344445544444 22 3478899999999999999999999876
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEE------eCCEEEEecCHHHHHhccC
Q 003981 698 --PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALC------SDGRIAELGTHFELLARKG 768 (782)
Q Consensus 698 --~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVL------d~G~Ive~Gth~eLl~~~g 768 (782)
+||||||||++||+.+++.+.+.|+++. +|+|+|+|+|+++.++.||+|++| ++|+|+++|+|+|+++..+
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~ 905 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPH 905 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCc
Confidence 6999999999999999999999999875 589999999999999999999999 8999999999999999887
Q ss_pred chHHHH
Q 003981 769 QYASLV 774 (782)
Q Consensus 769 ~Y~~L~ 774 (782)
.|..-+
T Consensus 906 syt~~~ 911 (916)
T 3pih_A 906 SYTGRF 911 (916)
T ss_dssp CHHHHH
T ss_pred hHHHHH
Confidence 776544
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4e-32 Score=316.58 Aligned_cols=196 Identities=24% Similarity=0.336 Sum_probs=152.5
Q ss_pred eeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEE-----------EECCeeCCCCChH
Q 003981 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI-----------TVGGEDLRTFDKS 610 (782)
Q Consensus 542 nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I-----------~idG~di~~i~~~ 610 (782)
|++++|.. ....|++++ ++++||++||+||||||||||+++|+|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~--~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSA--NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECST--TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECC--CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 56899963 345788877 699999999999999999999999999999999998 3445444333333
Q ss_pred hhhhceE--EEcccCC----CCc---ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCCh
Q 003981 611 EWARVVS--IVNQEPV----LFS---VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSG 681 (782)
Q Consensus 611 ~lR~~Ia--~V~Q~~~----LF~---gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSG 681 (782)
.+++.+. +.+|... .+. .++.+++.... ...++++.++++..++.++.. ..-..|||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSg 224 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM---EKSPEDVKRYIKILQLENVLK-----------RDIEKLSG 224 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC---CSCHHHHHHHHHHHTCTGGGG-----------SCTTTCCH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh---hhHHHHHHHHHHHcCCcchhC-----------CChHHCCH
Confidence 3344443 3333222 122 26777776542 235678888888887765432 33467999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHh-cCeEEEEeCCEE
Q 003981 682 GQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQN-AHQIALCSDGRI 754 (782)
Q Consensus 682 GQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~-aD~IiVLd~G~I 754 (782)
|||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ |+|+|+|+|+++.+.. ||+|+||++|..
T Consensus 225 Ge~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 225 GELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999999999998864 8999999999999876 999999998754
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.7e-32 Score=316.31 Aligned_cols=192 Identities=21% Similarity=0.331 Sum_probs=152.9
Q ss_pred eeEEEcCCCCCccceeeeeEE-EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEE-----------EECCeeCCCCCh
Q 003981 542 DVYFSYPLRPDVVILNGLNLT-LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI-----------TVGGEDLRTFDK 609 (782)
Q Consensus 542 nVsF~Y~~~~~~~vL~~Isl~-I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I-----------~idG~di~~i~~ 609 (782)
+++.+|.. +. ++-..|. +++||.+||+||||||||||+|+|+|++.|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~--~~--f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKV--NG--FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESST--TS--CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCC--Cc--eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 57889963 32 4444454 45999999999999999999999999999999999 678876643322
Q ss_pred Hh------hhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH
Q 003981 610 SE------WARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ 683 (782)
Q Consensus 610 ~~------lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ 683 (782)
.. .+..+.++.|.+.++.+|+++++.... ..+++.++++..++.++. +..+ ..|||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-----~~~~~~~~l~~l~l~~~~-------~~~~----~~LSgGe 143 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID-----ERGKKDEVKELLNMTNLW-------NKDA----NILSGGG 143 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC-----CSSCHHHHHHHTTCGGGT-------TSBG----GGCCHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcch-----hHHHHHHHHHHcCCchhh-------cCCh----hhCCHHH
Confidence 21 223355667777788899999987431 123456677777765532 3333 4699999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHh-cCeEEEEeCCE
Q 003981 684 RQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQN-AHQIALCSDGR 753 (782)
Q Consensus 684 rQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~-aD~IiVLd~G~ 753 (782)
|||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|+||++|.
T Consensus 144 ~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 144 LQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 99999999999999999999999999999999999999999889999999999998865 99999998754
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=1.4e-31 Score=320.13 Aligned_cols=219 Identities=24% Similarity=0.375 Sum_probs=161.4
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHH-HHcCC-------CC---------------
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQL-LARFY-------EP--------------- 592 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~L-L~gly-------~p--------------- 592 (782)
..|+++|+++. +|+||||+|++|+++||+|+||||||||++. |+|+. .|
T Consensus 501 ~~L~v~~l~~~--------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTRN--------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEET--------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeeec--------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 45999999861 5999999999999999999999999999996 66543 22
Q ss_pred ---Ccc-------EEEECCeeCCCCCh----------HhhhhceEEEcc-------------------------------
Q 003981 593 ---TGG-------RITVGGEDLRTFDK----------SEWARVVSIVNQ------------------------------- 621 (782)
Q Consensus 593 ---~~G-------~I~idG~di~~i~~----------~~lR~~Ia~V~Q------------------------------- 621 (782)
.+| .|.+||.++..-+. +.+|+.++++++
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 78999998865432 344544333332
Q ss_pred cCCCC-------------------------cccHHHHHHcCCC-----CCCCCHHHHHHHHHHhcchhHHHhCCCCccc-
Q 003981 622 EPVLF-------------------------SVSVGENIAYGLP-----DENVSKDDIIKAAKAANAHDFIISLPQGYDT- 670 (782)
Q Consensus 622 ~~~LF-------------------------~gTIreNI~~G~p-----~~~~s~eei~~A~~~a~l~dfI~~LP~GldT- 670 (782)
+-..+ .-||.||+.+... .... +++. ...+.+..+ |+..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~--~~~~------~~~~~L~~~--gL~~~ 722 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE--SAIF------RALDTLREV--GLGYL 722 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS--HHHH------HHHHHHHHT--TCTTS
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc--hHHH------HHHHHHHHc--CCCcc
Confidence 11111 1255555543200 0000 1111 112333444 3333
Q ss_pred cccCCCCCCChhHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeE
Q 003981 671 LVGERGGLLSGGQRQRIAIARALLKN---APILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQI 746 (782)
Q Consensus 671 ~VGE~G~~LSGGQrQRIaIARALlr~---p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~I 746 (782)
.++....+|||||||||+|||||+++ |+||||||||++||..+.+.+.+.|+++. +|+|+|+|+|++..++.||+|
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDri 802 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWV 802 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 35777889999999999999999996 69999999999999999999999998874 689999999999999999999
Q ss_pred EEE------eCCEEEEecCHHHHHhccCchHH
Q 003981 747 ALC------SDGRIAELGTHFELLARKGQYAS 772 (782)
Q Consensus 747 iVL------d~G~Ive~Gth~eLl~~~g~Y~~ 772 (782)
++| ++|+|++.|+++|+.+....|..
T Consensus 803 i~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~ 834 (842)
T 2vf7_A 803 LDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTA 834 (842)
T ss_dssp EEECSSSGGGCCSEEEEECHHHHTTCTTCSSH
T ss_pred EEECCCCCCCCCEEEEEcCHHHHHhCchhHHH
Confidence 999 79999999999999877655543
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=3.2e-31 Score=297.52 Aligned_cols=200 Identities=27% Similarity=0.401 Sum_probs=156.2
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--------------------------------------CCccE
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE--------------------------------------PTGGR 596 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~--------------------------------------p~~G~ 596 (782)
+++++||++++| +++|||++|||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 689999999999 999999999999999999966653 45789
Q ss_pred EEECCeeCCCCChHhhhhc-eEEEcccCCCCcccHHHHHHcCCCCCCCCH------------------------------
Q 003981 597 ITVGGEDLRTFDKSEWARV-VSIVNQEPVLFSVSVGENIAYGLPDENVSK------------------------------ 645 (782)
Q Consensus 597 I~idG~di~~i~~~~lR~~-Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~------------------------------ 645 (782)
|++||.+++..+..++++. +++++|+..++-.+-.++..|- +.....
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~l--d~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLL--DRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHH--HHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 9999999987777777777 8999999999888877666553 111110
Q ss_pred --------------HHHHHHHHH-------------hcchhHHHhC--C----------------CCccc---cccCCCC
Q 003981 646 --------------DDIIKAAKA-------------ANAHDFIISL--P----------------QGYDT---LVGERGG 677 (782)
Q Consensus 646 --------------eei~~A~~~-------------a~l~dfI~~L--P----------------~GldT---~VGE~G~ 677 (782)
+++.+.+.. ..+.+.+..+ | .|.+. .++.++.
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000000000 0011111222 2 23333 4555554
Q ss_pred C--------CChhHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEE
Q 003981 678 L--------LSGGQRQRIAIARALLKNA--PILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIA 747 (782)
Q Consensus 678 ~--------LSGGQrQRIaIARALlr~p--~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~Ii 747 (782)
. ||||||||++|||||+.+| +||||||||++||+.+.+.|.+.|+++.+++|+|+|||+++.+..||+|+
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~ 366 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHY 366 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEE
Confidence 4 8999999999999999999 99999999999999999999999999988999999999999999999999
Q ss_pred EE----eCCEEEEe
Q 003981 748 LC----SDGRIAEL 757 (782)
Q Consensus 748 VL----d~G~Ive~ 757 (782)
|| ++|+++..
T Consensus 367 ~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 367 KVEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEEETTEEEEE
T ss_pred EEEEeccCCceEEE
Confidence 99 99999765
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-34 Score=327.00 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=155.2
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCcc-E-EEECCeeCCCCChHhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG-R-ITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G-~-I~idG~di~~i~~~~lR~ 614 (782)
.++++||+|+|+ ++||++++|++++|+||||||||||+++|+|++.|++| + |++||. .|+
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccC
Confidence 466777777772 69999999999999999999999999999999999999 9 999982 377
Q ss_pred ceEEEcccCCCCc----ccHHHHHHcCCCC-CC-CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHH
Q 003981 615 VVSIVNQEPVLFS----VSVGENIAYGLPD-EN-VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIA 688 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~----gTIreNI~~G~p~-~~-~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIa 688 (782)
.++||||++.+|. .|++||+ |+... .. ..++++.++++.. |++.... ..+||||||||++
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrla 245 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLG 245 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHH
Confidence 8999999996553 5999999 76321 01 1112222222222 4444432 6789999999999
Q ss_pred HHHH--hccCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChh------HH-HhcCe-----EEEE
Q 003981 689 IARA--LLKNAPI----LILDE-ATSALDAVSERLVQDALNHLMKGRTTLVIAHRLS------TV-QNAHQ-----IALC 749 (782)
Q Consensus 689 IARA--Llr~p~I----LILDE-aTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLs------ti-~~aD~-----IiVL 749 (782)
|||| |+.+|+| ||||| |||+||+. .+.+.+.++++ ++|+|+|+|+.. .+ +.||+ |++|
T Consensus 246 lAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l 322 (460)
T 2npi_A 246 QVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFI 322 (460)
T ss_dssp HHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEE
Confidence 9999 9999999 99999 99999999 77777777764 789999999987 43 45999 9999
Q ss_pred e-CCEEEEecCHHHHHh
Q 003981 750 S-DGRIAELGTHFELLA 765 (782)
Q Consensus 750 d-~G~Ive~Gth~eLl~ 765 (782)
+ +|+|+ .|+++++.+
T Consensus 323 ~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 323 PKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCCTTCC-CCCHHHHHH
T ss_pred eCCCcEE-ECCHHHHhh
Confidence 9 99999 999998854
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=4.8e-30 Score=306.86 Aligned_cols=216 Identities=24% Similarity=0.342 Sum_probs=161.5
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHH-c----CC---CCCcc-------------
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA-R----FY---EPTGG------------- 595 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~-g----ly---~p~~G------------- 595 (782)
.++++|++. ..|+||||+|++|+++||+|+||||||||++.|+ | .+ .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 589999862 2599999999999999999999999999999854 2 11 11233
Q ss_pred EEEECCeeCCCCC---hH-------hhh---------hceEEEcccCCC---------------------C---------
Q 003981 596 RITVGGEDLRTFD---KS-------EWA---------RVVSIVNQEPVL---------------------F--------- 626 (782)
Q Consensus 596 ~I~idG~di~~i~---~~-------~lR---------~~Ia~V~Q~~~L---------------------F--------- 626 (782)
.|.+||.++..-+ +. ..| +.++|++|...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889998885322 11 122 345788775321 0
Q ss_pred -------------------------cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccc-cccCCCCCCC
Q 003981 627 -------------------------SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDT-LVGERGGLLS 680 (782)
Q Consensus 627 -------------------------~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT-~VGE~G~~LS 680 (782)
.-|+.||+.|... . .++.++ .+.+..+ |+.. ..+....+||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~---~--~~~~~~------~~~L~~~--gL~~~~l~~~~~~LS 847 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS---I--PKIKRK------LETLYDV--GLGYMKLGQPATTLS 847 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS---C--HHHHHH------HHHHHHT--TCSSSBTTCCGGGCC
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc---c--hhHHHH------HHHHHHc--CCCcccccCchhhCC
Confidence 2256666665421 1 111111 1233333 4444 4677788999
Q ss_pred hhHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEE------e
Q 003981 681 GGQRQRIAIARALLKNA---PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALC------S 750 (782)
Q Consensus 681 GGQrQRIaIARALlr~p---~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVL------d 750 (782)
|||||||+|||||+++| +||||||||++||+.+.+.+.+.|+++. +|+|+|+|+|++..++.||+|++| +
T Consensus 848 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~ 927 (972)
T 2r6f_A 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDR 927 (972)
T ss_dssp HHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTS
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCC
Confidence 99999999999999875 9999999999999999999999998875 589999999999999999999999 7
Q ss_pred CCEEEEecCHHHHHhccCchHHH
Q 003981 751 DGRIAELGTHFELLARKGQYASL 773 (782)
Q Consensus 751 ~G~Ive~Gth~eLl~~~g~Y~~L 773 (782)
+|+|++.|+++++.+....|...
T Consensus 928 ~G~Iv~~g~~~el~~~~~~~t~~ 950 (972)
T 2r6f_A 928 GGQIVAVGTPEEVAEVKESHTGR 950 (972)
T ss_dssp CCSEEEEESHHHHHTCTTCHHHH
T ss_pred CCEEEEecCHHHHHhCchhHHHH
Confidence 99999999999998766555443
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=1.5e-29 Score=303.75 Aligned_cols=217 Identities=24% Similarity=0.375 Sum_probs=160.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHH-----cCCC---CCccE------------
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA-----RFYE---PTGGR------------ 596 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~-----gly~---p~~G~------------ 596 (782)
.++++|++. .+|+||||+|++|+++||+|+||||||||+++|+ +.+. +..|.
T Consensus 647 ~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 647 QLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp EEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred eEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 589999862 2599999999999999999999999999999853 2222 23343
Q ss_pred -EEECCeeCCCCC---hH-------hhh---------hceEEEcccCCC---------------------C---------
Q 003981 597 -ITVGGEDLRTFD---KS-------EWA---------RVVSIVNQEPVL---------------------F--------- 626 (782)
Q Consensus 597 -I~idG~di~~i~---~~-------~lR---------~~Ia~V~Q~~~L---------------------F--------- 626 (782)
|.+||.++..-+ +. ..| +.++|++|...+ |
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 566666664221 11 122 345777775321 0
Q ss_pred -------------------------cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccc-cccCCCCCCC
Q 003981 627 -------------------------SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDT-LVGERGGLLS 680 (782)
Q Consensus 627 -------------------------~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT-~VGE~G~~LS 680 (782)
..|+.||+.|... . .++.++ .+.+..+ |+.. .++....+||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~---~--~~~~~~------~~~L~~l--gL~~~~l~~~~~~LS 865 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP---I--AGVHRY------LRTLVDV--GLGYVRLGQPAPTLS 865 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT---C--HHHHHH------HHHHHHT--TGGGSBTTCCGGGSC
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc---c--hHHHHH------HHHHHHc--CCCcccccCccccCC
Confidence 1245556655421 1 111111 1233333 4444 5678888999
Q ss_pred hhHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEE------e
Q 003981 681 GGQRQRIAIARALLKNA---PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALC------S 750 (782)
Q Consensus 681 GGQrQRIaIARALlr~p---~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVL------d 750 (782)
|||||||+|||||+++| +||||||||++||..+.+.+.+.|+++. +|+|+|+|+|++..++.||+|++| +
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~ 945 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAG 945 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCC
Confidence 99999999999999875 9999999999999999999999998874 589999999999999999999999 6
Q ss_pred CCEEEEecCHHHHHhccCchHHHH
Q 003981 751 DGRIAELGTHFELLARKGQYASLV 774 (782)
Q Consensus 751 ~G~Ive~Gth~eLl~~~g~Y~~L~ 774 (782)
+|+|++.|+++++.+....|...+
T Consensus 946 ~G~Iv~~G~~~el~~~~~~~t~~~ 969 (993)
T 2ygr_A 946 GGTVVAQGTPEDVAAVPASYTGKF 969 (993)
T ss_dssp CSEEEEEECHHHHHHCTTCHHHHH
T ss_pred CCEEEEecCHHHHHhCCHHHHHHH
Confidence 999999999999988766665444
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=1.4e-28 Score=267.32 Aligned_cols=215 Identities=19% Similarity=0.233 Sum_probs=154.0
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC---------------------------
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--------------------------- 589 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl--------------------------- 589 (782)
.|+++| -.+|. +++++++.+| .++|+|++|||||||+++|..+
T Consensus 5 ~L~i~n-fr~~~--------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~ 74 (322)
T 1e69_A 5 KLYLKG-FKSFG--------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPP 74 (322)
T ss_dssp EEEEES-BTTBC--------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCC
T ss_pred EEEEeC-ceeec--------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCC
Confidence 367777 22342 2578888999 9999999999999999999843
Q ss_pred -----------------------CCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCC-cccHHHHHHcCCCCCC---
Q 003981 590 -----------------------YEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLF-SVSVGENIAYGLPDEN--- 642 (782)
Q Consensus 590 -----------------------y~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF-~gTIreNI~~G~p~~~--- 642 (782)
+.+.+|++.+||.+++..+...+.+.+++.+|+..++ .|+|.+|+.+. |...
T Consensus 75 ~~~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ 153 (322)
T 1e69_A 75 AGSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLE 153 (322)
T ss_dssp CSEEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------
T ss_pred CceEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHH
Confidence 3445689999999886666677777899999998766 89999999764 2110
Q ss_pred -----------CCHHHHHHHHHHhc-------------chhHHHhCCCCccccccC------CCCCCChhHHHHHHHHHH
Q 003981 643 -----------VSKDDIIKAAKAAN-------------AHDFIISLPQGYDTLVGE------RGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 643 -----------~s~eei~~A~~~a~-------------l~dfI~~LP~GldT~VGE------~G~~LSGGQrQRIaIARA 692 (782)
.+++++.+.++..- ..+....++.|+++.++. ....||||||||++||||
T Consensus 154 ld~~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~ 233 (322)
T 1e69_A 154 SSKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALL 233 (322)
T ss_dssp -------------CHHHHHHHHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHH
Confidence 01122333322110 001123466688776543 346899999999999999
Q ss_pred hc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeE--EEEeCCEE-EEecCHHH
Q 003981 693 LL----KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQI--ALCSDGRI-AELGTHFE 762 (782)
Q Consensus 693 Ll----r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~I--iVLd~G~I-ve~Gth~e 762 (782)
|. ++|+|||||||||+||+.+.+.+.+.|+++.+++|+|+|||+...+..||++ ++|++|+. +...+-+|
T Consensus 234 l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 234 FALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp HHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred HHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 96 7899999999999999999999999999987788999999999888999987 88888865 33344444
No 68
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.94 E-value=2e-30 Score=266.05 Aligned_cols=166 Identities=16% Similarity=0.118 Sum_probs=125.2
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh-HhhhhceEEEcccCCCC------
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARVVSIVNQEPVLF------ 626 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~Ia~V~Q~~~LF------ 626 (782)
..|+||||+|++|++++||||||||||||+++|+|++ | |+|.+ |+++...+. ...++.++|++|++.+|
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 6 99999 887755432 34567899999987555
Q ss_pred -----cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHH-----HHHhccC
Q 003981 627 -----SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAI-----ARALLKN 696 (782)
Q Consensus 627 -----~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaI-----ARALlr~ 696 (782)
.+++++| .+|. +++++.++++... ...+. .+||||||||++| ||+++++
T Consensus 87 ~~~l~~~~~~~~-~~g~-----~~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~ 145 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT-----LKSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKP 145 (218)
T ss_dssp TCEEEEEEETTE-EEEE-----EHHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEEC
T ss_pred cchhhhhhcccc-cCCC-----cHHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeC
Confidence 4555666 4553 2455666664322 12222 6899999999999 9999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeC
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSD 751 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~ 751 (782)
|++++|||||+++|.++|..|++.|.+..+++| ++| +..||.|+|+++
T Consensus 146 ~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 146 PSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp SCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred cCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999999998877777 788 578999988865
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=1.8e-29 Score=256.89 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=104.5
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIre 632 (782)
..+|+|| ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+|+.|+||+|++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 4689996 89999999999999999999999999 99999994 333331 2335688899999998 77
Q ss_pred HH-HcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 003981 633 NI-AYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDA 711 (782)
Q Consensus 633 NI-~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~ 711 (782)
|+ .++.+. .+.+........+.+.+.. |+ |||||++|||||+.+|+|||||||||+
T Consensus 78 nl~~~~~~~----~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~--- 134 (208)
T 3b85_A 78 KIDPYLRPL----HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT--- 134 (208)
T ss_dssp --CTTTHHH----HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC---
T ss_pred HHHHHHHHH----HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 77 453110 0000000000111222221 22 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEE
Q 003981 712 VSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRI 754 (782)
Q Consensus 712 ~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~I 754 (782)
+++.+.+.|+++.+++|+| |||+++.+. ++...++|..
T Consensus 135 -~~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 135 -TPAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp -CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred -cHHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 8889999998875578888 999988654 4556667754
No 70
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.92 E-value=6.9e-28 Score=262.22 Aligned_cols=141 Identities=17% Similarity=0.166 Sum_probs=121.3
Q ss_pred EEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEE
Q 003981 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIV 619 (782)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 619 (782)
|+||+| | .++++++||++++|+.++|+||||||||||+++|+|+++|++|.|+++|.+ ++....+++.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 778888 8 368999999999999999999999999999999999999999999999975 34444456667665
Q ss_pred cccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 003981 620 NQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPI 699 (782)
Q Consensus 620 ~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~I 699 (782)
+| |||+||++|||||.++|++
T Consensus 223 ~g-----------------------------------------------------------gg~~~r~~la~aL~~~p~i 243 (330)
T 2pt7_A 223 FG-----------------------------------------------------------GNITSADCLKSCLRMRPDR 243 (330)
T ss_dssp CB-----------------------------------------------------------TTBCHHHHHHHHTTSCCSE
T ss_pred eC-----------------------------------------------------------CChhHHHHHHHHhhhCCCE
Confidence 40 8999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCc-EEEEEecChhHHHhcCeEEEEeCCEE
Q 003981 700 LILDEATSALDAVSERLVQDALNHLMKGR-TTLVIAHRLSTVQNAHQIALCSDGRI 754 (782)
Q Consensus 700 LILDEaTSALD~~tE~~I~~~L~~l~~~k-TvIvIaHRLsti~~aD~IiVLd~G~I 754 (782)
+||||||+. .+.+.|+.+..++ |+|+++|++++...||||++|++|+.
T Consensus 244 lildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 244 IILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp EEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 999999992 2455666666665 79999999999999999999999864
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=1.6e-26 Score=227.89 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=108.1
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCC--CCcccHHHHHH
Q 003981 558 GLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPV--LFSVSVGENIA 635 (782)
Q Consensus 558 ~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~--LF~gTIreNI~ 635 (782)
||||++++||.++|+||||||||||++++.+-+ .. ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 689999999999999999999999999965321 11 2233344 56777752 22222222221
Q ss_pred cCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH-
Q 003981 636 YGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSE- 714 (782)
Q Consensus 636 ~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE- 714 (782)
..+ ...+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 64 --------------~~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 --------------YIV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp --------------HHH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred --------------HHH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 111 112334666665544 34599999999999999999999999999999999955
Q ss_pred ---------------HHHHHHHHHhc-CCcEEEEEecChhHHHhcCeE
Q 003981 715 ---------------RLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQI 746 (782)
Q Consensus 715 ---------------~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~I 746 (782)
+.+.+.|+++. +|+|+|+|+|+++.+..++++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77777765553 489999999999999888765
No 72
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.92 E-value=1e-24 Score=240.62 Aligned_cols=82 Identities=22% Similarity=0.292 Sum_probs=76.0
Q ss_pred CCCCCChhHHHHHHHHHHhc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEE
Q 003981 675 RGGLLSGGQRQRIAIARALL------KNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIA 747 (782)
Q Consensus 675 ~G~~LSGGQrQRIaIARALl------r~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~Ii 747 (782)
...+||||||||++|||||. .+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||++..+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 44579999999999999999 7999999999999999999999999998875 5899999999999998999999
Q ss_pred EEeCCEEEE
Q 003981 748 LCSDGRIAE 756 (782)
Q Consensus 748 VLd~G~Ive 756 (782)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999985
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.92 E-value=3.7e-26 Score=226.86 Aligned_cols=147 Identities=15% Similarity=0.134 Sum_probs=111.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHH
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDD 647 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~ee 647 (782)
+++|+||+|||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+ ++.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh--------
Confidence 689999999999999999999995 667887654443225678899999987 334444 2210
Q ss_pred HHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH-----hccCCCEEEEeC--CCCCCCHHHHHHHHHH
Q 003981 648 IIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA-----LLKNAPILILDE--ATSALDAVSERLVQDA 720 (782)
Q Consensus 648 i~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA-----Llr~p~ILILDE--aTSALD~~tE~~I~~~ 720 (782)
. .+ .+..++..+.+||||||||++|||| ++.+|+++|||| ||+++|+.+.+.+.+.
T Consensus 63 -----------~----~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~ 125 (178)
T 1ye8_A 63 -----------F----FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI 125 (178)
T ss_dssp -----------T----CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH
T ss_pred -----------c----CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH
Confidence 0 00 1145677888999999999999996 999999999999 9999999999999999
Q ss_pred HHHhcCCcEEEEEec---ChhHHHh-cCeEEEEeCCEEEE
Q 003981 721 LNHLMKGRTTLVIAH---RLSTVQN-AHQIALCSDGRIAE 756 (782)
Q Consensus 721 L~~l~~~kTvIvIaH---RLsti~~-aD~IiVLd~G~Ive 756 (782)
+++ .+.|+|+++| ....+.. ||+ .+|+|++
T Consensus 126 l~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 126 MHD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HTC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred Hhc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 876 4677999986 6666654 666 5677766
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.91 E-value=1.2e-27 Score=269.38 Aligned_cols=195 Identities=18% Similarity=0.171 Sum_probs=160.3
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCe---eCCCCC----
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE---DLRTFD---- 608 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~---di~~i~---- 608 (782)
+.++++||++.|+. +..+|+++ |+|++||+++|+||||||||||+++|+|+++|+.|.|.++|+ ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 35888999999963 45799999 999999999999999999999999999999999999999998 555432
Q ss_pred -hHhhhhceEEEccc--CCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 609 -KSEWARVVSIVNQE--PVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 609 -~~~lR~~Ia~V~Q~--~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
...+++.|+||+|+ +...+-|+.+|+.+. .+.... +...+..++ +...+||||| |
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~--------ae~~~~-~~~~v~~~l------------d~l~~lS~g~-q 264 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRI--------AEDFRD-RGQHVLLIM------------DSLTRYAMAQ-R 264 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHH--------HHHHHT-TTCEEEEEE------------ECHHHHHHHH-H
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHH--------HHHHHh-CCCCHHHHH------------HhHHHHHHHH-H
Confidence 35688999999994 344567999999875 122211 111122221 2356799999 9
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-----Cc-----EEEEEecChhHHHhcCeEEEEeCCEEE
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK-----GR-----TTLVIAHRLSTVQNAHQIALCSDGRIA 755 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-----~k-----TvIvIaHRLsti~~aD~IiVLd~G~Iv 755 (782)
|++|| +.+|++ |++||+.++..+.+.++++.+ |+ |++++||+++ ...||++++|.+|+|+
T Consensus 265 rvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Iv 334 (438)
T 2dpy_A 265 EIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIV 334 (438)
T ss_dssp HHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEE
T ss_pred HHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEE
Confidence 99999 899998 999999999999999988865 54 9999999999 7889999999999999
Q ss_pred EecCHHHHHh
Q 003981 756 ELGTHFELLA 765 (782)
Q Consensus 756 e~Gth~eLl~ 765 (782)
..|+++++..
T Consensus 335 l~~~~~~~~~ 344 (438)
T 2dpy_A 335 LSRRLAEAGH 344 (438)
T ss_dssp ECHHHHHTTC
T ss_pred EeCCHHHccC
Confidence 9999998854
No 75
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.89 E-value=6.6e-28 Score=253.85 Aligned_cols=185 Identities=20% Similarity=0.214 Sum_probs=152.9
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-ccEEEECCeeCCCCChHhhhhce
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT-GGRITVGGEDLRTFDKSEWARVV 616 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~-~G~I~idG~di~~i~~~~lR~~I 616 (782)
++++|++|. ++|+|+| +++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 345677642 4899999 9999999999999999999999999999998 999999999886553 3456
Q ss_pred EEEcc-----cCCCCcccHHHHHHcCCCC----CCC-CHHHHHHHHHHhcch-----------------hHH--------
Q 003981 617 SIVNQ-----EPVLFSVSVGENIAYGLPD----ENV-SKDDIIKAAKAANAH-----------------DFI-------- 661 (782)
Q Consensus 617 a~V~Q-----~~~LF~gTIreNI~~G~p~----~~~-s~eei~~A~~~a~l~-----------------dfI-------- 661 (782)
++|+| ++..|..+|+.|++.. |+ ++. +.+.++.+++.+... ..+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~-p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~ 151 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQ 151 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHC-CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGH
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhC-CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCcccc
Confidence 78888 7777889999999874 42 112 666676766654321 111
Q ss_pred ----HhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHhcC
Q 003981 662 ----ISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPI--LILDEATSALDAVS---------ERLVQDALNHLMK 726 (782)
Q Consensus 662 ----~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~I--LILDEaTSALD~~t---------E~~I~~~L~~l~~ 726 (782)
..+++++++.|++++..+||| ||++|||+++.||+| +|+||+||++|... +..++++++.+.+
T Consensus 152 ~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 229 (261)
T 2eyu_A 152 EQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQ 229 (261)
T ss_dssp HHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHT
T ss_pred chHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHc
Confidence 235689999999999999999 999999999999999 99999999999863 5578999999999
Q ss_pred CcEEEEEecChh
Q 003981 727 GRTTLVIAHRLS 738 (782)
Q Consensus 727 ~kTvIvIaHRLs 738 (782)
|+|++.++||++
T Consensus 230 g~t~~~~a~r~~ 241 (261)
T 2eyu_A 230 GLITLEDAMEAS 241 (261)
T ss_dssp TSSCHHHHHHHC
T ss_pred CCCCHHHHHHHh
Confidence 999999999987
No 76
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=4e-26 Score=254.03 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=135.3
Q ss_pred ccceeeeeEEEeCCc--------------------EEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh
Q 003981 553 VVILNGLNLTLKSGS--------------------VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW 612 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge--------------------~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l 612 (782)
+.+|+||||+|++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 468999999999999 99999999999999999999999999999999998763
Q ss_pred hhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChh--HHHHHHHH
Q 003981 613 ARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGG--QRQRIAIA 690 (782)
Q Consensus 613 R~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGG--QrQRIaIA 690 (782)
| .++++|++...+-|+.||+.++.+ ++++.+.++..++.++ +..+ . |||| ||||++||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~-----~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST-----NFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDIA 168 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS-----SCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccch-----HHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHHH
Confidence 1 278999986567899999988843 2345666666665442 2222 2 8999 99999999
Q ss_pred HHhcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------C----CcEEEEEecChhH--HHh-cCeEE
Q 003981 691 RALLK----------NAPILILDEATSALDAVSERLVQDALNHLM------K----GRTTLVIAHRLST--VQN-AHQIA 747 (782)
Q Consensus 691 RALlr----------~p~ILILDEaTSALD~~tE~~I~~~L~~l~------~----~kTvIvIaHRLst--i~~-aD~Ii 747 (782)
|||.+ +|++++|||||++||+.+++.+.+.|+++. . .+++++.||.++- +.. ||+|.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999998888887763 1 2456677898875 544 77774
No 77
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.88 E-value=8.6e-26 Score=222.49 Aligned_cols=111 Identities=17% Similarity=0.264 Sum_probs=90.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCC---ccEEEECCeeCCCCC---hHhhh-hceE----EEcccCCCCcccHHHHHH
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRTFD---KSEWA-RVVS----IVNQEPVLFSVSVGENIA 635 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly~p~---~G~I~idG~di~~i~---~~~lR-~~Ia----~V~Q~~~LF~gTIreNI~ 635 (782)
++++|||+||||||||+++|+|+|+|+ .|+|.+||.++.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999998887 78898 5788 899999998 322
Q ss_pred cCCCCCCCCHHHHHHHHHHhcchhHHHh-CCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 003981 636 YGLPDENVSKDDIIKAAKAANAHDFIIS-LPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPIL 700 (782)
Q Consensus 636 ~G~p~~~~s~eei~~A~~~a~l~dfI~~-LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~IL 700 (782)
+ + +++ .|+++++|.. || ||||.|+|+ |||||||||+||||++++|+|.
T Consensus 77 -~------~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V------S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C------C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C------C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 222 6899999999 99 999999995 9999999999999999999874
No 78
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.88 E-value=2.6e-23 Score=248.83 Aligned_cols=96 Identities=25% Similarity=0.347 Sum_probs=87.6
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEE
Q 003981 672 VGERGGLLSGGQRQRIAIARALLKNA--PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIAL 748 (782)
Q Consensus 672 VGE~G~~LSGGQrQRIaIARALlr~p--~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiV 748 (782)
.+..-.+|||||||||+|||||.++| .||||||||++||+...+.+.+.|+++. .|.|+|+|+|++..++.||+|++
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~ 452 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVD 452 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEE
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE
Confidence 45566789999999999999999999 4999999999999999999999888875 48999999999999999999999
Q ss_pred E------eCCEEEEecCHHHHHhcc
Q 003981 749 C------SDGRIAELGTHFELLARK 767 (782)
Q Consensus 749 L------d~G~Ive~Gth~eLl~~~ 767 (782)
| ++|+|+..|+++++.+..
T Consensus 453 lgpgaG~~~G~iv~~g~~~~~~~~~ 477 (842)
T 2vf7_A 453 VGPEAGEKGGEILYSGPPEGLKHVP 477 (842)
T ss_dssp ECSSSGGGCCSEEEEECGGGGGGCT
T ss_pred eCCCcccCCCEEEEecCHHHHHhch
Confidence 9 799999999999998753
No 79
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.88 E-value=2.1e-26 Score=254.47 Aligned_cols=177 Identities=21% Similarity=0.259 Sum_probs=149.2
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-ccEEEECCeeCCCCChHhhhhceEEEcc-----cCCCCc
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT-GGRITVGGEDLRTFDKSEWARVVSIVNQ-----EPVLFS 627 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~-~G~I~idG~di~~i~~~~lR~~Ia~V~Q-----~~~LF~ 627 (782)
++|++++ +++|+.++|+|||||||||++++|+|+|+|+ +|+|.+.|.++. + .+++.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3577766 8999999999999999999999999999998 899988776664 2 36788999999 899999
Q ss_pred ccHHHHHHcCCCC----CCC-CHHHHHHHHHHhcchh-----------------HH------------HhCCCCcccccc
Q 003981 628 VSVGENIAYGLPD----ENV-SKDDIIKAAKAANAHD-----------------FI------------ISLPQGYDTLVG 673 (782)
Q Consensus 628 gTIreNI~~G~p~----~~~-s~eei~~A~~~a~l~d-----------------fI------------~~LP~GldT~VG 673 (782)
++|++||++. |+ ++. +.+.++.+++.++... ++ ..+|+++++.|+
T Consensus 200 ~~l~~~L~~~-pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTSC-CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhhC-cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 9999999984 43 111 6777888888776421 11 125789999999
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHhcCCcEEEEEecChhH
Q 003981 674 ERGGLLSGGQRQRIAIARALLKNAPI--LILDEATSALDAV----S-----ERLVQDALNHLMKGRTTLVIAHRLST 739 (782)
Q Consensus 674 E~G~~LSGGQrQRIaIARALlr~p~I--LILDEaTSALD~~----t-----E~~I~~~L~~l~~~kTvIvIaHRLst 739 (782)
+++..+||| ||++|||+++.+|+| +|+||+||+||.. + +..++++++.+.+|+|++.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999999999 899999999999999 9999999999975 3 55788999999999999999999984
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.87 E-value=5.2e-25 Score=237.49 Aligned_cols=175 Identities=17% Similarity=0.203 Sum_probs=131.6
Q ss_pred cccEEEEeeEEEcCCCCCccceeeeeEE-----------------------EeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 535 SGDICLEDVYFSYPLRPDVVILNGLNLT-----------------------LKSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~Isl~-----------------------I~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
.+.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|+|+++
T Consensus 41 ~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45699999999994 577877775 89999999999999999999999999999
Q ss_pred CCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcC----CCCCCCCHHHHHHHHHHhcchhHHHhCCCC
Q 003981 592 PTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYG----LPDENVSKDDIIKAAKAANAHDFIISLPQG 667 (782)
Q Consensus 592 p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G----~p~~~~s~eei~~A~~~a~l~dfI~~LP~G 667 (782)
|+.|. ++|++|+||+++|..|++||+.+. .|. ..+.+.+.+. +..+..|
T Consensus 116 ~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~-~~d~~~~~~~---------L~~l~~~ 168 (312)
T 3aez_A 116 RWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPE-SYNRRALMRF---------VTSVKSG 168 (312)
T ss_dssp TSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGG-GBCHHHHHHH---------HHHHHTT
T ss_pred ccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCCh-HHHHHHHHHH---------HHHhCCC
Confidence 98664 459999999999999999999763 221 1223333333 3444344
Q ss_pred cc-ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHH--HhcC
Q 003981 668 YD-TLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTV--QNAH 744 (782)
Q Consensus 668 ld-T~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti--~~aD 744 (782)
+. ..+ ..|||||+||+++|||++.+|+|||||||++.+|+.. ..+.++. + .+|+|.|..+.. +..+
T Consensus 169 ~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~ 237 (312)
T 3aez_A 169 SDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVS 237 (312)
T ss_dssp CSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHH
T ss_pred cccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHH
Confidence 43 444 4799999999999999999999999999999998621 1233333 3 457778777654 2356
Q ss_pred eEEEEeCC
Q 003981 745 QIALCSDG 752 (782)
Q Consensus 745 ~IiVLd~G 752 (782)
|.+.+.+|
T Consensus 238 R~~~~rd~ 245 (312)
T 3aez_A 238 RFLAMRTT 245 (312)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhc
Confidence 66555554
No 81
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.87 E-value=1.1e-25 Score=227.16 Aligned_cols=169 Identities=16% Similarity=0.170 Sum_probs=136.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCC-------------CCccEEEECCeeCCCCChHhhhhceEEEcccCCCCccc
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYE-------------PTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVS 629 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-------------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gT 629 (782)
+++|++++||||||||||||+++|+|+|+ |..|+ +||.++..++.+.+++.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999996 88998 599999999999999986 7999999999
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHH-HhccCCCEEEEeCCCCC
Q 003981 630 VGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIAR-ALLKNAPILILDEATSA 708 (782)
Q Consensus 630 IreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR-ALlr~p~ILILDEaTSA 708 (782)
+++|+ ||. ++++++++++.+...-+ .-.|+|+++.... ++ .|| +++++|++++|||+|++
T Consensus 76 ~~~n~-~g~-----~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~ 136 (198)
T 1lvg_A 76 FSGNL-YGT-----SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRL 136 (198)
T ss_dssp ETTEE-EEE-----EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHH
T ss_pred ecCcc-CCC-----CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHh
Confidence 99999 883 57899999976433322 2357788887532 22 677 89999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHh
Q 003981 709 LDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 709 LD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~ 765 (782)
+|.++|+.|++.|.+..++ +.++| ++ ..+|+|+|+++ -..++++|.+
T Consensus 137 ~d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 137 RNTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp HTCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 9999999999999887654 46788 55 88999999885 2355666654
No 82
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.87 E-value=3.2e-24 Score=226.84 Aligned_cols=149 Identities=17% Similarity=0.135 Sum_probs=97.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcc-cHHHHHHcCCCCC-CCCH
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSV-SVGENIAYGLPDE-NVSK 645 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~g-TIreNI~~G~p~~-~~s~ 645 (782)
.+|||||||||||||+|+|+|++.|++|+|.++|.++. ....++.++||+|++.++.. ||.||+.||.... ....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~---~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIP---KTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CC---CCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccC---cceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 58999999999999999999999999999999999874 33457889999999998865 9999999985321 1122
Q ss_pred HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 003981 646 DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM 725 (782)
Q Consensus 646 eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~ 725 (782)
+.+.+.++ .++-..++ ..||||||||++||||+.. +++|||||++||+... .+.+.|.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~--- 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLS--- 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHH---
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHH---
Confidence 33444433 33332222 2599999999999999886 9999999999999763 3333443
Q ss_pred CCcEEEEEecChhHHH
Q 003981 726 KGRTTLVIAHRLSTVQ 741 (782)
Q Consensus 726 ~~kTvIvIaHRLsti~ 741 (782)
+.+++|+|.|+..++.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999987663
No 83
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.86 E-value=2.5e-23 Score=223.40 Aligned_cols=176 Identities=19% Similarity=0.265 Sum_probs=130.2
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC----hHhh--hhceEEEcccCC-CC-c
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD----KSEW--ARVVSIVNQEPV-LF-S 627 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~----~~~l--R~~Ia~V~Q~~~-LF-~ 627 (782)
++++||++++|+.++||||+||||||+++.|+|++.|++|+|.++|.|+.... +..| |..|+||+|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688999999999999999999999999999999999999999999886653 2344 457999999997 65 4
Q ss_pred ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC--EEEEeCC
Q 003981 628 VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAP--ILILDEA 705 (782)
Q Consensus 628 gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~--ILILDEa 705 (782)
.|++|||.++... ..+ . ..++.+++ .+-.+..++| || |||++||||+..+|+ +|+|| |
T Consensus 170 ~~v~e~l~~~~~~-~~d-~---~lldt~gl-------~~~~~~~~~e----LS---kqr~~iaral~~~P~e~lLvLD-p 229 (302)
T 3b9q_A 170 TVLSKAVKRGKEE-GYD-V---VLCDTSGR-------LHTNYSLMEE----LI---ACKKAVGKIVSGAPNEILLVLD-G 229 (302)
T ss_dssp HHHHHHHHHHHHT-TCS-E---EEECCCCC-------SSCCHHHHHH----HH---HHHHHHHTTSTTCCSEEEEEEE-G
T ss_pred HHHHHHHHHHHHc-CCc-c---hHHhcCCC-------CcchhHHHHH----HH---HHHHHHHHhhccCCCeeEEEEe-C
Confidence 6999999875211 110 0 01111222 1112333333 78 999999999999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEec---------ChhHHH-hcCeEEEEeCCEEE
Q 003981 706 TSALDAVSERLVQDALNHLMKGRTTLVIAH---------RLSTVQ-NAHQIALCSDGRIA 755 (782)
Q Consensus 706 TSALD~~tE~~I~~~L~~l~~~kTvIvIaH---------RLsti~-~aD~IiVLd~G~Iv 755 (782)
|+++|+.++. +.+.+ ..+.|+|++|| .++.+. ..+.|.++..|+.+
T Consensus 230 tsglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 230 NTGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCCcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9999997653 22332 24789999999 556554 36899999999764
No 84
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.85 E-value=1.3e-21 Score=214.45 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=76.2
Q ss_pred CCChhHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEE
Q 003981 678 LLSGGQRQRIAIARALL---------KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIAL 748 (782)
Q Consensus 678 ~LSGGQrQRIaIARALl---------r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiV 748 (782)
.||||||||++|||+|. .+|||||||||||+||+...+.+.+.|.++. +|+|++|| ++. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998863 89999999 454 8999999
Q ss_pred EeCCEEEEecCHHHHH
Q 003981 749 CSDGRIAELGTHFELL 764 (782)
Q Consensus 749 Ld~G~Ive~Gth~eLl 764 (782)
|++|+|++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999998873
No 85
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.83 E-value=2.3e-22 Score=219.93 Aligned_cols=175 Identities=18% Similarity=0.259 Sum_probs=130.9
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC----hHhh--hhceEEEcccCC-CC-cc
Q 003981 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD----KSEW--ARVVSIVNQEPV-LF-SV 628 (782)
Q Consensus 557 ~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~----~~~l--R~~Ia~V~Q~~~-LF-~g 628 (782)
+.+||++++|+.++|||++||||||+++.|+|++.|++|+|.++|.|+.... +..| |..|+||+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578999999999999999999999999999999999999999999886543 2334 567999999987 55 56
Q ss_pred cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC--EEEEeCCC
Q 003981 629 SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAP--ILILDEAT 706 (782)
Q Consensus 629 TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~--ILILDEaT 706 (782)
|++|||.++... ..+ . ..++.+++ .+-.+..+. .|| |||++||||+..+|+ +|||| ||
T Consensus 228 tv~e~l~~~~~~-~~d-~---~lldt~Gl-------~~~~~~~~~----eLS---kqr~~iaral~~~P~e~lLvLD-pt 287 (359)
T 2og2_A 228 VLSKAVKRGKEE-GYD-V---VLCDTSGR-------LHTNYSLME----ELI---ACKKAVGKIVSGAPNEILLVLD-GN 287 (359)
T ss_dssp HHHHHHHHHHHT-TCS-E---EEEECCCC-------SSCCHHHHH----HHH---HHHHHHHHHSTTCCSEEEEEEE-GG
T ss_pred hHHHHHHHHHhC-CCH-H---HHHHhcCC-------ChhhhhHHH----HHH---HHHHHHHHHHhcCCCceEEEEc-CC
Confidence 999999876211 111 0 01111222 111223333 378 999999999999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEec---------ChhHHH-hcCeEEEEeCCEEE
Q 003981 707 SALDAVSERLVQDALNHLMKGRTTLVIAH---------RLSTVQ-NAHQIALCSDGRIA 755 (782)
Q Consensus 707 SALD~~tE~~I~~~L~~l~~~kTvIvIaH---------RLsti~-~aD~IiVLd~G~Iv 755 (782)
+++|+.++. +.+.+ ..+.|+|++|| .++.+. ..+.|..+..|+.+
T Consensus 288 tglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 288 TGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp GGGGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCCCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 999997653 22332 24789999999 456654 46799999999754
No 86
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.83 E-value=4.9e-23 Score=206.24 Aligned_cols=159 Identities=14% Similarity=0.161 Sum_probs=124.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCH
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSK 645 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~ 645 (782)
|++++|+|++|||||||+++|+|+++ ++| |.+||.++.++. .++++++|++|+. +++ ++|+.--. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~----~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVG----LEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECC----CCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhccc----ccC
Confidence 78999999999999999999999999 999 999999886554 5799999999986 444 34443110 000
Q ss_pred HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH-HHHH---HhccCCCEEEEeC--CCCCCCHHHHHHHHH
Q 003981 646 DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI-AIAR---ALLKNAPILILDE--ATSALDAVSERLVQD 719 (782)
Q Consensus 646 eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI-aIAR---ALlr~p~ILILDE--aTSALD~~tE~~I~~ 719 (782)
. +...+..+|+.|..+|||||+++ +++| |+.++|+|||||| ||..+|....+.+.+
T Consensus 69 ------------~------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~ 130 (189)
T 2i3b_A 69 ------------P------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ 130 (189)
T ss_dssp ------------C------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH
T ss_pred ------------C------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH
Confidence 0 11234589999999999999999 6666 7899999999999 888899988888777
Q ss_pred HHHHhcCCcEEEE--Ee--cChhHHHhcCeEEEEeCCEEEEec
Q 003981 720 ALNHLMKGRTTLV--IA--HRLSTVQNAHQIALCSDGRIAELG 758 (782)
Q Consensus 720 ~L~~l~~~kTvIv--Ia--HRLsti~~aD~IiVLd~G~Ive~G 758 (782)
.+++ .+|+|+ |+ ||.+ ..-+|+|..+++|+|++..
T Consensus 131 ~l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 131 TLST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred HHhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 7764 456664 44 9876 5667899999999998754
No 87
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.83 E-value=1.1e-22 Score=206.53 Aligned_cols=170 Identities=17% Similarity=0.141 Sum_probs=110.1
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCc-ccHH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS-VSVG 631 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~-gTIr 631 (782)
.++++| .+|++||+++|+||||||||||+++|+|+++ .|.+++.....-+....++.++|++|++.+|. -|++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 7999999999999999999999999999996 34455422111111234678999999998875 3556
Q ss_pred HHHHcCC------CCCCCCHHHHHHHHHH----------hcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 003981 632 ENIAYGL------PDENVSKDDIIKAAKA----------ANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLK 695 (782)
Q Consensus 632 eNI~~G~------p~~~~s~eei~~A~~~----------a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr 695 (782)
+|+.... .....+.+++.+.++. .++.++....|. .|| ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EEEE
Confidence 6653110 0001234444443332 233333333332 233 8999
Q ss_pred CCCEEEEeCCCCCC----CHHHHHHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEe
Q 003981 696 NAPILILDEATSAL----DAVSERLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCS 750 (782)
Q Consensus 696 ~p~ILILDEaTSAL----D~~tE~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd 750 (782)
+|++++|||||+++ |+.+.+.+.+.++++. .++|+|+|+|.++.+.. ||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 7788899999888874 47899999999998864 99999985
No 88
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.83 E-value=6e-25 Score=242.08 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=121.9
Q ss_pred EEEeeEEE---cCCCCCccce---------eeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC
Q 003981 539 CLEDVYFS---YPLRPDVVIL---------NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT 606 (782)
Q Consensus 539 ~f~nVsF~---Y~~~~~~~vL---------~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~ 606 (782)
+|+||+|+ |+.. +.++| +++||+|++|+.++|+||||||||||+++|+|+|+|++|.|+++|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 88999999 9631 34566 9999999999999999999999999999999999999999999985 56
Q ss_pred CChHhhhhceEEEc-ccCCC---CcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChh
Q 003981 607 FDKSEWARVVSIVN-QEPVL---FSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGG 682 (782)
Q Consensus 607 i~~~~lR~~Ia~V~-Q~~~L---F~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGG 682 (782)
+....+|+.++||+ |++.+ +..|+++||.++... .++..+..+++.+.+++++..+|.|++|.+++-+.+-..+
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~--~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~ 291 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM--KPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCEL 291 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTS--CCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhc--CCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHH
Confidence 66666889999999 99887 899999999988542 3344455556667788999999999999999999998999
Q ss_pred HHHHHHHHHHh
Q 003981 683 QRQRIAIARAL 693 (782)
Q Consensus 683 QrQRIaIARAL 693 (782)
..+||+....-
T Consensus 292 ~~~Rl~~l~~~ 302 (361)
T 2gza_A 292 TFERLALMVLQ 302 (361)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999887653
No 89
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.82 E-value=6.4e-22 Score=216.22 Aligned_cols=193 Identities=18% Similarity=0.196 Sum_probs=148.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC-------CCh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT-------FDK 609 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~-------i~~ 609 (782)
-++.+|+++.|.. +..+|+++ |+|.+||+++|+|++|||||||+++|+|+++|+.|.|.+.|++.++ ...
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4788899999963 45799999 9999999999999999999999999999999999999999975222 122
Q ss_pred HhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccc-cCCCCCCChhHHHHHH
Q 003981 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLV-GERGGLLSGGQRQRIA 688 (782)
Q Consensus 610 ~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~V-GE~G~~LSGGQrQRIa 688 (782)
..+++.+.+++|... ...+++..+.....+.++... .|.+..+ -+.-.+||+|| ||++
T Consensus 122 ~~~~~~v~~~~~~~~------------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~ 180 (347)
T 2obl_A 122 STLSKCVLVVTTSDR------------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVG 180 (347)
T ss_dssp HHHTTEEEEEECTTS------------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHH
T ss_pred hhhhceEEEEECCCC------------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHH
Confidence 334555666665321 113444444444444444332 3433211 23456899999 9999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCc-----EEEEEecChhHHHhcCeEEEEeCCEEEEecCH
Q 003981 689 IARALLKNAPILILDEATSALDAVSERLVQDALNHLM---KGR-----TTLVIAHRLSTVQNAHQIALCSDGRIAELGTH 760 (782)
Q Consensus 689 IARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~---~~k-----TvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth 760 (782)
+| +.+|++ |+++|+.....+.+.++++. +|. |++++||+++ -.-||++++|.+|+|+..|+.
T Consensus 181 la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 181 LA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp HH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHH
T ss_pred HH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCH
Confidence 99 689988 99999999999999998875 366 8999999999 566999999999999999988
Q ss_pred HHH
Q 003981 761 FEL 763 (782)
Q Consensus 761 ~eL 763 (782)
+|+
T Consensus 251 ~~~ 253 (347)
T 2obl_A 251 AEE 253 (347)
T ss_dssp HTT
T ss_pred HHc
Confidence 776
No 90
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=1.1e-20 Score=228.03 Aligned_cols=167 Identities=23% Similarity=0.340 Sum_probs=118.9
Q ss_pred HHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHh
Q 003981 584 QLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIIS 663 (782)
Q Consensus 584 ~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~ 663 (782)
.+.-+.+.|+.|+|+++|.+|.++....+.+.++++.+-. -+.+++ .--.++.+..+. ..+++..
T Consensus 386 ~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~----l~~~~~---------~~~~~~~~~~~~--~~~~L~~ 450 (916)
T 3pih_A 386 VCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLN----LTERER---------EIVGELLKEIEK--RLEFLVD 450 (916)
T ss_dssp TTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCC----CCTTTT---------TTHHHHHHHHHH--HHHHHHT
T ss_pred hcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhcc----CcHHHH---------HHHHhhHHHHHH--HHHHHHH
Confidence 3334578999999999999886544333333333322110 011110 111112211111 1233443
Q ss_pred CCCCcccc-ccCCCCCCChhHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhH
Q 003981 664 LPQGYDTL-VGERGGLLSGGQRQRIAIARALLKNAP--ILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLST 739 (782)
Q Consensus 664 LP~GldT~-VGE~G~~LSGGQrQRIaIARALlr~p~--ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLst 739 (782)
+ |++.. ......+||||||||++|||||.++|+ ||||||||++||+...+.+.+.|+++. +|+|+|+|+|++..
T Consensus 451 v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~ 528 (916)
T 3pih_A 451 V--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528 (916)
T ss_dssp T--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHH
T ss_pred c--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 3 44322 345567899999999999999999887 999999999999999999999999885 48999999999999
Q ss_pred HHhcCeEEEE------eCCEEEEecCHHHHHhcc
Q 003981 740 VQNAHQIALC------SDGRIAELGTHFELLARK 767 (782)
Q Consensus 740 i~~aD~IiVL------d~G~Ive~Gth~eLl~~~ 767 (782)
+..||+|++| ++|+|++.|+++|+++..
T Consensus 529 ~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 529 IRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp HHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred HHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 9999999999 999999999999998754
No 91
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.81 E-value=2.9e-22 Score=221.23 Aligned_cols=147 Identities=22% Similarity=0.354 Sum_probs=115.0
Q ss_pred eeeeeEEEeC--CcEEEEECCCCCcHHHHHHHHHcCCCCCc----cEEEE----CCeeCCCCChHhhhhceEEEcccCCC
Q 003981 556 LNGLNLTLKS--GSVTALVGSSGAGKSTIVQLLARFYEPTG----GRITV----GGEDLRTFDKSEWARVVSIVNQEPVL 625 (782)
Q Consensus 556 L~~Isl~I~~--Ge~vaIVG~SGSGKSTLl~LL~gly~p~~----G~I~i----dG~di~~i~~~~lR~~Ia~V~Q~~~L 625 (782)
.+.|+++|++ |++++|||+||||||||+++|+|+|+|++ |+|.+ +|.++ .++..++ ++|++++|++.+
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHH
Confidence 5679999999 99999999999999999999999999999 99987 46666 5666667 669999999999
Q ss_pred CcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCC--ccccc-c-------CCCCCCChhHHHHHHHHHHh--
Q 003981 626 FSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQG--YDTLV-G-------ERGGLLSGGQRQRIAIARAL-- 693 (782)
Q Consensus 626 F~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~G--ldT~V-G-------E~G~~LSGGQrQRIaIARAL-- 693 (782)
|++|++|||.++.+ +..+..+...+...+..+++..++.+ ++..+ + ++|.++||||+||++|+|+|
T Consensus 236 ~~~t~~~nl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~ 313 (365)
T 1lw7_A 236 YAVRHSHKIAFIDT--DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK 313 (365)
T ss_dssp HHHHHCSSEEEESS--CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred HHHhccCCEEEEeC--CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence 99999999999843 34456666666666777778777754 54433 3 67889999999999999999
Q ss_pred -cc--CCCEEEEeCCC
Q 003981 694 -LK--NAPILILDEAT 706 (782)
Q Consensus 694 -lr--~p~ILILDEaT 706 (782)
++ +++|+++||||
T Consensus 314 l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 314 LLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHGGGCCCEEEECSS
T ss_pred HHHHcCCCEEEeCCCC
Confidence 77 89999999997
No 92
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.80 E-value=1.2e-22 Score=206.27 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=115.7
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcc---cHHHHHHc--C
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSV---SVGENIAY--G 637 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~g---TIreNI~~--G 637 (782)
.++|+++||+|+||||||||+++|+|++.| +++||+||+++|+. |+++|+.+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 49999999999854 67777655 3
Q ss_pred CCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCC-------CC
Q 003981 638 LPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSA-------LD 710 (782)
Q Consensus 638 ~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSA-------LD 710 (782)
.| ...+.+++.++++..++.+++.. | +++...|+++. |+||+++||+++.+|+++++||||++ ||
T Consensus 61 ~~-~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld 132 (211)
T 3asz_A 61 HP-DAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVD 132 (211)
T ss_dssp SG-GGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEECS-----SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEE
T ss_pred Ch-hhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCCC-----CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEe
Confidence 22 23456788888888877766543 4 55555554432 57899999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhc--CCcEEEEEecCh
Q 003981 711 AVSERLVQDALNHLM--KGRTTLVIAHRL 737 (782)
Q Consensus 711 ~~tE~~I~~~L~~l~--~~kTvIvIaHRL 737 (782)
+.++..+.+.+++.. +|+|++.++|+.
T Consensus 133 ~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 133 ADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999887653 589999999984
No 93
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.79 E-value=2.7e-20 Score=199.28 Aligned_cols=181 Identities=17% Similarity=0.123 Sum_probs=125.8
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCcc-EEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHH
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG-RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G-~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIre 632 (782)
++|+++++.+++|+.++|+|++|||||||++.|++...|++| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999988 67654432 3566777766666555432 3345
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhH-HHHHHHHHHhccCCCEEEEeCCCC---C
Q 003981 633 NIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQ-RQRIAIARALLKNAPILILDEATS---A 708 (782)
Q Consensus 633 NI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQ-rQRIaIARALlr~p~ILILDEaTS---A 708 (782)
|+..+. .++++..++++. ++...+-+ +.+...++|.+| +||+. |+|+..+|+++||||||+ +
T Consensus 97 ~l~~~~----~~~~~~~~~~~~-----~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 97 SLKREI----IENGKFDQWFDE-----LFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp HHHHHH----HHHTHHHHHHHH-----HHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred ccccCC----CCHHHHHHHHHH-----HhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 666541 233444433322 12222212 223335689999 77777 999999999999999999 4
Q ss_pred ---CCH-HHHHHHHHHHHHhcC--CcEEEEEecCh--h--------------------HH-HhcCeEEEEeCCEE
Q 003981 709 ---LDA-VSERLVQDALNHLMK--GRTTLVIAHRL--S--------------------TV-QNAHQIALCSDGRI 754 (782)
Q Consensus 709 ---LD~-~tE~~I~~~L~~l~~--~kTvIvIaHRL--s--------------------ti-~~aD~IiVLd~G~I 754 (782)
+|. .....+.+.|+++.+ ++|+|+++|.. . .+ ..||+|++|++|+.
T Consensus 163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 455677777877643 89999999995 3 34 56999999999985
No 94
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.79 E-value=2.5e-19 Score=206.70 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=71.4
Q ss_pred CCC-ChhHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCC
Q 003981 677 GLL-SGGQRQRIAIARALLKNA--PILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDG 752 (782)
Q Consensus 677 ~~L-SGGQrQRIaIARALlr~p--~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G 752 (782)
..| |||||||++|||||+.+| ++|||||||++||..+...|.+.|+++.+++|+|+|||++..+..||+|++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999999987799999999999999999999999554
No 95
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.79 E-value=3.7e-21 Score=200.43 Aligned_cols=170 Identities=13% Similarity=0.140 Sum_probs=110.6
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHH
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIr 631 (782)
+.++|+||||++++|+.+||+||+|||||||+++|+|++ |.+.+| ..++.++|++|+++...-|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999987 555554 367889999999754456999
Q ss_pred HHHHcCCCCC------CCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCC
Q 003981 632 ENIAYGLPDE------NVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEA 705 (782)
Q Consensus 632 eNI~~G~p~~------~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEa 705 (782)
+|+.+....- ..+.+++.+.++ .+.++.+..+ ..||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~---------~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLK---------NIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHH---------HHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHH---------HHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 9987642110 112333333332 2233445444 4699999999998 799999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHH-Hh-cCeEEEEeCCEEEEecCHHHHHhc
Q 003981 706 TSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTV-QN-AHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 706 TSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti-~~-aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
....|.. +.++ .+.|++++||...-+ +. ++.+ ++|+ +.+++.++
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 8877753 2333 488999999974333 33 3334 6675 67777643
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.78 E-value=1.9e-21 Score=224.71 Aligned_cols=167 Identities=17% Similarity=0.092 Sum_probs=119.7
Q ss_pred CccceeeeeE-EEeCCcEEEEECCCCCcHHHHHHH--HHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcc
Q 003981 552 DVVILNGLNL-TLKSGSVTALVGSSGAGKSTIVQL--LARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSV 628 (782)
Q Consensus 552 ~~~vL~~Isl-~I~~Ge~vaIVG~SGSGKSTLl~L--L~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~g 628 (782)
+.++|+|||| .|++|+.++|+||||||||||+++ +.|+++|.+|.|+++|.+. ..+....++.++|++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 4579999999 999999999999999999999999 6899999999999999873 223345567899999997631
Q ss_pred cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc-cCCCEEEEeCCCC
Q 003981 629 SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL-KNAPILILDEATS 707 (782)
Q Consensus 629 TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl-r~p~ILILDEaTS 707 (782)
+|+.+-...+ . ++.+++++..++.+ +.-.++++|- .+|++++|||||+
T Consensus 101 ---~~l~~~~~~~--~-~~~~~~l~~~~l~~-------------------------~~~~~~~~LS~g~~~~lilDe~t~ 149 (525)
T 1tf7_A 101 ---GKLFILDASP--D-PEGQEVVGGFDLSA-------------------------LIERINYAIQKYRARRVSIDSVTS 149 (525)
T ss_dssp ---TSEEEEECCC--C-SSCCSCCSSHHHHH-------------------------HHHHHHHHHHHHTCSEEEEECSTT
T ss_pred ---CcEEEEecCc--c-cchhhhhcccCHHH-------------------------HHHHHHHHHHHcCCCEEEECCHHH
Confidence 2332211110 0 00011111111212 2223333332 3578999999998
Q ss_pred C-----CCHHHHHHHHHHHHHhc-CCcEEEEEecChhHH---------Hh-cCeEEEEeCC
Q 003981 708 A-----LDAVSERLVQDALNHLM-KGRTTLVIAHRLSTV---------QN-AHQIALCSDG 752 (782)
Q Consensus 708 A-----LD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti---------~~-aD~IiVLd~G 752 (782)
. +|+...+.+.+.++.+. .|+|+|+|+|+++.+ .. ||+|++|++|
T Consensus 150 ~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 150 VFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 5 58899999999887764 489999999999874 45 9999999983
No 97
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.77 E-value=4.7e-18 Score=185.60 Aligned_cols=78 Identities=28% Similarity=0.408 Sum_probs=69.5
Q ss_pred CCCChhHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEE
Q 003981 677 GLLSGGQRQ------RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALC 749 (782)
Q Consensus 677 ~~LSGGQrQ------RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVL 749 (782)
..||||||| |+++|||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+......||+|++|
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l 326 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 326 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEE
Confidence 579999999 7788999999999999999999999999999999998864 478999999998888889999998
Q ss_pred e--CCEE
Q 003981 750 S--DGRI 754 (782)
Q Consensus 750 d--~G~I 754 (782)
+ +|..
T Consensus 327 ~~~~g~s 333 (339)
T 3qkt_A 327 SLENGSS 333 (339)
T ss_dssp EEETTEE
T ss_pred EecCCcc
Confidence 5 4543
No 98
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.76 E-value=3.6e-19 Score=213.38 Aligned_cols=150 Identities=24% Similarity=0.365 Sum_probs=115.5
Q ss_pred CCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCH----------HHHHHHHHHhcchh
Q 003981 590 YEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSK----------DDIIKAAKAANAHD 659 (782)
Q Consensus 590 y~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~----------eei~~A~~~a~l~d 659 (782)
|.|....|+++|.+|.+ +...||.|++.|.. +-..+. +|+.+-+ +
T Consensus 432 l~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e-~l~l~~~~~~i~~~~~~ei~~Rl------~ 486 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGE------------------VTAMSVTEALAFFD-GLELTEKEAQIARLILREIRDRL------G 486 (972)
T ss_dssp BCTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHH-HCCCCHHHHHHSHHHHHHHHHHH------H
T ss_pred cCHHHheeEECCCcHHH------------------HhhCCHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHH------H
Confidence 56788889999987643 34568888888752 112333 1222222 1
Q ss_pred HHHhCCCCcccc-ccCCCCCCChhHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEec
Q 003981 660 FIISLPQGYDTL-VGERGGLLSGGQRQRIAIARALLKNA--PILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAH 735 (782)
Q Consensus 660 fI~~LP~GldT~-VGE~G~~LSGGQrQRIaIARALlr~p--~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaH 735 (782)
++..+ |++.. ....-.+|||||||||+||+||..+| ++|||||||++||+...+.+.+.|+++. .|.|+|+|+|
T Consensus 487 ~L~~v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeH 564 (972)
T 2r6f_A 487 FLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564 (972)
T ss_dssp HHHHH--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HhhhC--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 22222 33321 34445689999999999999999985 9999999999999998889999998876 5899999999
Q ss_pred ChhHHHhcCeEEEE------eCCEEEEecCHHHHHhc
Q 003981 736 RLSTVQNAHQIALC------SDGRIAELGTHFELLAR 766 (782)
Q Consensus 736 RLsti~~aD~IiVL------d~G~Ive~Gth~eLl~~ 766 (782)
++..++.||+|++| ++|+|+..|+++++++.
T Consensus 565 dl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 565 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp CHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred CHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 99999999999999 79999999999999864
No 99
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.75 E-value=2e-19 Score=207.79 Aligned_cols=169 Identities=14% Similarity=0.040 Sum_probs=125.9
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
++.+++++.|+. -..+|+ ..+++|+.++|+|++|||||||++.+++...|. |+ +.+.
T Consensus 258 ~~~~~l~~g~~~--ld~vL~---g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVR--LDEMCG---GGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHH--HHHHTT---SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHH--HHHHhC---CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 466778777741 012343 489999999999999999999999999998874 53 1156
Q ss_pred EEcccCCCCcccHHHHHH-cCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 003981 618 IVNQEPVLFSVSVGENIA-YGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN 696 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~-~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~ 696 (782)
+++|++. .++++|.. +| .+.+++ ... |+..........|||||+||+++||++..+
T Consensus 315 ~~~ee~~---~~l~~~~~~~g-----~~~~~~----~~~-----------g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~ 371 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSWG-----MDFEEM----ERQ-----------NLLKIVCAYPESAGLEDHLQIIKSEINDFK 371 (525)
T ss_dssp EESSSCH---HHHHHHHHTTS-----CCHHHH----HHT-----------TSEEECCCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCH---HHHHHHHHHcC-----CCHHHH----HhC-----------CCEEEEEeccccCCHHHHHHHHHHHHHhhC
Confidence 7777762 36666653 33 222221 111 222223334467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHH-----HHHHHHHHHHHhc-CCcEEEEEecCh----------hHHH-hcCeEEEEeCCE
Q 003981 697 APILILDEATSALDAV-----SERLVQDALNHLM-KGRTTLVIAHRL----------STVQ-NAHQIALCSDGR 753 (782)
Q Consensus 697 p~ILILDEaTSALD~~-----tE~~I~~~L~~l~-~~kTvIvIaHRL----------sti~-~aD~IiVLd~G~ 753 (782)
|++||+| ||++||.. ..+.+.+.++.+. .|+|+|+|+|.. ..+. .||+|++|++|+
T Consensus 372 p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 372 PARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred CCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999 99999998 8888877776654 589999999998 5554 499999999987
No 100
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.75 E-value=4e-19 Score=217.87 Aligned_cols=171 Identities=16% Similarity=0.142 Sum_probs=123.5
Q ss_pred ccEEEEe-----eEEEcCCCCCccceeeeeEEEeC-------CcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCee
Q 003981 536 GDICLED-----VYFSYPLRPDVVILNGLNLTLKS-------GSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED 603 (782)
Q Consensus 536 g~I~f~n-----VsF~Y~~~~~~~vL~~Isl~I~~-------Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~d 603 (782)
+.|+++| |++.|++ +..+++|++|++++ |+.++|+||+||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 3599999 9999952 35799999999987 999999999999999999999 99863
Q ss_pred CCCCChHhhhhceE-EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChh
Q 003981 604 LRTFDKSEWARVVS-IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGG 682 (782)
Q Consensus 604 i~~i~~~~lR~~Ia-~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGG 682 (782)
+.++| ||||++. .-|+.|||..- . ++.|.+. .|. .++|+|
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r-----i------------g~~d~~~---~~~--------stf~~e 855 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR-----L------------GASDRIM---SGE--------STFFVE 855 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE-----C------------C--------------------CHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH-----c------------CCHHHHh---hch--------hhhHHH
Confidence 34566 9999983 66788887421 1 1112111 122 356777
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHH-HHHHHHHHHHhc-C-CcEEEEEecChhHHHh-cCeEEEEeCCEEE--E
Q 003981 683 QRQRIAIARALLKNAPILILDEATSALDAVS-ERLVQDALNHLM-K-GRTTLVIAHRLSTVQN-AHQIALCSDGRIA--E 756 (782)
Q Consensus 683 QrQRIaIARALlr~p~ILILDEaTSALD~~t-E~~I~~~L~~l~-~-~kTvIvIaHRLsti~~-aD~IiVLd~G~Iv--e 756 (782)
+++ +++||++..+|+++||||||+++|+.. ...+.+.|+.+. + ++|+|++||.++.+.. ||++.|+ +|+++ +
T Consensus 856 m~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~ 933 (1022)
T 2o8b_B 856 LSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMV 933 (1022)
T ss_dssp HHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-
T ss_pred HHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEE
Confidence 765 999999999999999999999999965 566677777664 3 8999999999998865 8999887 58887 5
Q ss_pred ecCHH
Q 003981 757 LGTHF 761 (782)
Q Consensus 757 ~Gth~ 761 (782)
.|+.+
T Consensus 934 ~~~~~ 938 (1022)
T 2o8b_B 934 ENECE 938 (1022)
T ss_dssp -----
T ss_pred ecCcc
Confidence 56543
No 101
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.75 E-value=9.5e-20 Score=199.62 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=122.0
Q ss_pred ceeee-eEEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCc----cE-EEECCeeCCCCChHhhhhceEEEcccCCCC
Q 003981 555 ILNGL-NLTLKSGSVTALVGSSGAGKSTIVQLLARFY--EPTG----GR-ITVGGEDLRTFDKSEWARVVSIVNQEPVLF 626 (782)
Q Consensus 555 vL~~I-sl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly--~p~~----G~-I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF 626 (782)
.|+++ ++.|++|+.++|+||+|||||||++.+++.+ +|++ |. |+||+.+.. .++++++++|+..++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 46665 6899999999999999999999999999999 6666 67 999998651 256789999999999
Q ss_pred cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc-------cCCCE
Q 003981 627 SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL-------KNAPI 699 (782)
Q Consensus 627 ~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl-------r~p~I 699 (782)
..++.|||.+..+ .+ |++|+|++.++++++ .+|++
T Consensus 193 ~~~v~~ni~~~~~---~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~l 234 (349)
T 1pzn_A 193 PDEVLKHIYVARA---FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKL 234 (349)
T ss_dssp HHHHGGGEEEEEC---CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEE
T ss_pred HHHHhhCEEEEec---CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCE
Confidence 9999999998732 11 356788888888888 68999
Q ss_pred EEEeCCCCCCCHHH-------H-----HHHHHHHHHhc--CCcEEEEEecChhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 700 LILDEATSALDAVS-------E-----RLVQDALNHLM--KGRTTLVIAHRLSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 700 LILDEaTSALD~~t-------E-----~~I~~~L~~l~--~~kTvIvIaHRLsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
+|+||||+.+|++. + +.+...|.++. .++|+|+++|....... ++.+.+...|++++.+.+..|.
T Consensus 235 lIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 235 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 99999999999863 2 33334444443 38999999998775532 2456788889998888876664
No 102
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.75 E-value=5e-18 Score=191.37 Aligned_cols=73 Identities=21% Similarity=0.326 Sum_probs=68.0
Q ss_pred CCChhHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhHHHhcCeEEEEe
Q 003981 678 LLSGGQRQRIAIARALL----KNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLVIAHRLSTVQNAHQIALCS 750 (782)
Q Consensus 678 ~LSGGQrQRIaIARALl----r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti~~aD~IiVLd 750 (782)
.||||||||++|||+|. ++||+||||||||+||+.+...+.+.|+++.+ +.++|+|||+...+..||++++|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 789999999999999999999985
No 103
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=6e-18 Score=203.52 Aligned_cols=133 Identities=26% Similarity=0.394 Sum_probs=104.3
Q ss_pred CCcccHHHHHHcCCCCCCCCH----------HHHHHHHHHhcchhHHHhCCCCcccc-ccCCCCCCChhHHHHHHHHHHh
Q 003981 625 LFSVSVGENIAYGLPDENVSK----------DDIIKAAKAANAHDFIISLPQGYDTL-VGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 625 LF~gTIreNI~~G~p~~~~s~----------eei~~A~~~a~l~dfI~~LP~GldT~-VGE~G~~LSGGQrQRIaIARAL 693 (782)
++..||.|++.|.. +-..+. +|+.+-+ +++..+ |++.. ....-.+|||||||||+||+||
T Consensus 466 ~~~ltV~e~l~f~e-nl~l~~~~~~i~~~i~~ei~~Rl------~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL 536 (993)
T 2ygr_A 466 VCELSIADCADFLN-ALTLGPREQAIAGQVLKEIRSRL------GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQI 536 (993)
T ss_dssp SSHHHHHHHHHTTT-TTTSCHHHHHHHHHHHHHHHHHH------HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHH-hcCCCHHHhHHHHHHHHHHHHHH------HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHH
Confidence 56778889988852 222344 2222222 122222 44322 3455668999999999999999
Q ss_pred ccC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhHHHhcCeEEEE------eCCEEEEecCHHHHH
Q 003981 694 LKN--APILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIAHRLSTVQNAHQIALC------SDGRIAELGTHFELL 764 (782)
Q Consensus 694 lr~--p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti~~aD~IiVL------d~G~Ive~Gth~eLl 764 (782)
..+ |+||||||||++||+...+.+.+.|+++. .|+|+|+|+|++..++.||+|++| ++|+|+..|+++++.
T Consensus 537 ~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 537 GSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp TTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred hhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 998 58999999999999999999999988875 589999999999999999999999 699999999999998
Q ss_pred hc
Q 003981 765 AR 766 (782)
Q Consensus 765 ~~ 766 (782)
+.
T Consensus 617 ~~ 618 (993)
T 2ygr_A 617 RN 618 (993)
T ss_dssp HC
T ss_pred hh
Confidence 75
No 104
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.74 E-value=5.1e-18 Score=162.82 Aligned_cols=88 Identities=24% Similarity=0.318 Sum_probs=76.8
Q ss_pred Cccccc-----cCCCCCCChhHHHHHHHH------HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEe
Q 003981 667 GYDTLV-----GERGGLLSGGQRQRIAIA------RALLKNAPILILDEATSALDAVSERLVQDALNHLM-KGRTTLVIA 734 (782)
Q Consensus 667 GldT~V-----GE~G~~LSGGQrQRIaIA------RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~-~~kTvIvIa 734 (782)
+|++.+ .....+||||||||++|| |||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 777776 234578999999999876 99999999999999999999999999999999875 478999999
Q ss_pred cChhHHHhcCeEEEE--eCCEE
Q 003981 735 HRLSTVQNAHQIALC--SDGRI 754 (782)
Q Consensus 735 HRLsti~~aD~IiVL--d~G~I 754 (782)
|+......||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999767779999999 56644
No 105
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.73 E-value=7.6e-19 Score=179.81 Aligned_cols=148 Identities=19% Similarity=0.226 Sum_probs=104.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-------CccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHH
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEP-------TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENI 634 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-------~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI 634 (782)
-|++|+.++|+||||||||||+++|+|.+.+ ..|.|++++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999996665 455888888752 11 2457788898888888999999
Q ss_pred HcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc-------cCCCEEEEeCCCC
Q 003981 635 AYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL-------KNAPILILDEATS 707 (782)
Q Consensus 635 ~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl-------r~p~ILILDEaTS 707 (782)
.+..+ .+..+ |++++..+++++ .+|++++|||||+
T Consensus 95 ~~~~~---~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 95 YVARA---FNSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp EEEEC---CSHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred EEEec---CChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 88743 22221 222233333333 4899999999999
Q ss_pred CCCHH-------HH-----HHHHHHHHHhc--CCcEEEEEec----ChhHHHh-cCeEEEEeCCE
Q 003981 708 ALDAV-------SE-----RLVQDALNHLM--KGRTTLVIAH----RLSTVQN-AHQIALCSDGR 753 (782)
Q Consensus 708 ALD~~-------tE-----~~I~~~L~~l~--~~kTvIvIaH----RLsti~~-aD~IiVLd~G~ 753 (782)
.+|++ .+ ..+.+.|.++. .++|+|+|+| ....+.+ ||++++|++|+
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 99983 22 24555555543 3899999999 4444655 89999999763
No 106
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.73 E-value=2.1e-18 Score=205.55 Aligned_cols=147 Identities=20% Similarity=0.268 Sum_probs=114.6
Q ss_pred cccEEEEeeEEEcCCC--CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCccEEEECCeeCCCCChHh
Q 003981 535 SGDICLEDVYFSYPLR--PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-PTGGRITVGGEDLRTFDKSE 611 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~--~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-p~~G~I~idG~di~~i~~~~ 611 (782)
.+.|++++. ++|-- .+..+++|+||+ |+.++|+||+||||||++++++|+.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 456888888 44420 236799999999 99999999999999999999999874 6778752 1 1
Q ss_pred hhhceEEEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 612 WARVVSIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 612 lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
.+..+++|+| +|. -++.|||..| +|+|++|++.+|
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g-----------------------------------------~S~~~~e~~~la 647 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG-----------------------------------------KSTFMVEMEEVA 647 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C-----------------------------------------CSHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHhc-----------------------------------------ccHHHHHHHHHH
Confidence 2456889888 554 3666666532 478999999999
Q ss_pred HHh--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhcCCcEEEEEecChhHHHhc
Q 003981 691 RAL--LKNAPILILDEA---TSALDAVSE-RLVQDALNHLMKGRTTLVIAHRLSTVQNA 743 (782)
Q Consensus 691 RAL--lr~p~ILILDEa---TSALD~~tE-~~I~~~L~~l~~~kTvIvIaHRLsti~~a 743 (782)
+++ +.+|+++||||| ||++|..+. ..+.+.|.+ .++|+|++||..+....|
T Consensus 648 ~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 648 LILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999 999999999999 999999775 578888877 589999999998876554
No 107
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.73 E-value=2.2e-20 Score=199.38 Aligned_cols=131 Identities=8% Similarity=0.075 Sum_probs=98.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCC-C
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-V 643 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~-~ 643 (782)
++.+|||+|+||||||||+++|.+++.+. | . . ++.+.+|+||.++|+.++++|+.++.++.. .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 57899999999999999999999999864 2 1 1 455777799999999999999988743100 0
Q ss_pred CHHHHHHHHHHhcchhHHHhCCCCcccc------ccCCCCCCChhHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHH
Q 003981 644 SKDDIIKAAKAANAHDFIISLPQGYDTL------VGERGGLLSGGQRQRIAIA--RALLKNAPILILDEATSALDAVS 713 (782)
Q Consensus 644 s~eei~~A~~~a~l~dfI~~LP~GldT~------VGE~G~~LSGGQrQRIaIA--RALlr~p~ILILDEaTSALD~~t 713 (782)
+....-++...+.+.+++..+++|++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000112223455778899999998764 5667889999999999998 666 999999999999999854
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.72 E-value=8.7e-20 Score=213.84 Aligned_cols=190 Identities=16% Similarity=0.236 Sum_probs=124.2
Q ss_pred cEEEEeeEEEcCCCCCccceeee----------eEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CccEEEECCeeCC
Q 003981 537 DICLEDVYFSYPLRPDVVILNGL----------NLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRITVGGEDLR 605 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~I----------sl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-~~G~I~idG~di~ 605 (782)
.++++|+++.|+.. ..++|+.+ ++++|. +||||+||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 48899999999632 23455554 367765 999999999999999999999988 7999999999863
Q ss_pred CC---ChHhhhhceEEEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCCh
Q 003981 606 TF---DKSEWARVVSIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSG 681 (782)
Q Consensus 606 ~i---~~~~lR~~Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSG 681 (782)
.. ....+|+.|+||+|++.+++ .||+|||.++. +. +.. .+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-------~~-------------~~~-----------~~~~~s- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-------NA-------------IAG-----------EGMGIS- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-------HH-------------HHC-----------SSSCCC-
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-------HH-------------hcC-----------Cccccc-
Confidence 22 24578999999999998875 69999997531 00 000 011112
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhcC---CcEEEEEecChh--------HHHh--
Q 003981 682 GQRQRIAIARALLKNAPILILDEA------TSALDAVSERLVQDALNHLMK---GRTTLVIAHRLS--------TVQN-- 742 (782)
Q Consensus 682 GQrQRIaIARALlr~p~ILILDEa------TSALD~~tE~~I~~~L~~l~~---~kTvIvIaHRLs--------ti~~-- 742 (782)
++++.++.+...+|+++++||| |++||+.+++.+.+.++++.+ +-++++++|.+. .++.
T Consensus 134 --~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~ 211 (608)
T 3szr_A 134 --HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD 211 (608)
T ss_dssp --SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC
T ss_pred --hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh
Confidence 3445566666678999999999 999999999999999998643 456777899865 2333
Q ss_pred ---cCeEEEEeCCEEEEecCHHHHH
Q 003981 743 ---AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 743 ---aD~IiVLd~G~Ive~Gth~eLl 764 (782)
...|+|+.++.+++.|+.+++.
T Consensus 212 ~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 212 PEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred hcCCceEEEecchhhcCcccHHHHH
Confidence 3568999999999999876543
No 109
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.71 E-value=1.9e-19 Score=181.64 Aligned_cols=169 Identities=18% Similarity=0.212 Sum_probs=106.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCC-----CCCccEEEE-------CCeeCC
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY-----EPTGGRITV-------GGEDLR 605 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly-----~p~~G~I~i-------dG~di~ 605 (782)
|+++|++|.|+ .+++++ |++++|.+++|+|++|||||||++.|+|.. .|+.|.+.+ ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 899999999999999999999999999998 889898765 233222
Q ss_pred CCC-----------hHhhhhceEEEcccCCCCcc-cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCcccccc
Q 003981 606 TFD-----------KSEWARVVSIVNQEPVLFSV-SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVG 673 (782)
Q Consensus 606 ~i~-----------~~~lR~~Ia~V~Q~~~LF~g-TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VG 673 (782)
+.+ .+.+++.++++.|+...+++ ++..|+..+ . ...++++.+.++.. .+|. -.|+
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~--~-~~~~~~~~~~~~~~-------~~~~---~~v~ 144 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP--L-KDLDQQMIEWAVDS-------NIAV---LVLL 144 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC--C-CHHHHHHHHHHHHT-------TCCE---EEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC--C-chhHHHHHHHHHHc-------CCCe---EEEE
Confidence 111 13456666666665443332 333344332 1 11123343333221 2221 1235
Q ss_pred CCCCCCChhHHHH-HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 003981 674 ERGGLLSGGQRQR-IAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM 725 (782)
Q Consensus 674 E~G~~LSGGQrQR-IaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~ 725 (782)
..-..+|+||||| +.+||+++++|+++++||||||+|..+...+.+.|.++.
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 5555799999999 899999999999999999999999999999988887764
No 110
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.70 E-value=7.3e-19 Score=196.18 Aligned_cols=166 Identities=16% Similarity=0.194 Sum_probs=102.7
Q ss_pred ccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
+.|+++|++++|+ +..+++|+||+| +|||+||||||||++.|+|...|..| .+|.++... ....++.
T Consensus 10 ~~l~~~~l~~~y~---~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVY---RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTT---TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeEC---CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 4699999999996 347999999998 99999999999999999999886666 244433221 1122467
Q ss_pred eEEEcccCCCC-cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 616 VSIVNQEPVLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 616 Ia~V~Q~~~LF-~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+++++|++.++ +-||.||+.++.. .+.++.++.+ .+++.. .++++.+||++||||++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~---~~~~~~~~~i-----~~~i~~--------------~~~~~l~qr~~IaRal~ 134 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA---VDNSNCWQPV-----IDYIDS--------------KFEDYLNAESRVNRRQM 134 (418)
T ss_dssp EECC------CEEEEEEECC--------------CHHH-----HHHHHH--------------HHHHHTTTSCC-CCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh---ccchhhHHHH-----HHHHHH--------------HHHHHHHHHHHHHHHhc
Confidence 99999998887 6799999999843 2222222221 233321 34456678999999999
Q ss_pred cCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHH
Q 003981 695 KNAP---ILILDEAT-SALDAVSERLVQDALNHLMKGRTTLVIAHRLSTV 740 (782)
Q Consensus 695 r~p~---ILILDEaT-SALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti 740 (782)
++|+ +|+||||| ++||+..... ++.+..+.++|+|.|+..++
T Consensus 135 ~d~~~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 135 PDNRVQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCC-CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred cCCCeeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 9999 99999999 5999876422 33444578899999987654
No 111
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.70 E-value=2.8e-18 Score=184.19 Aligned_cols=149 Identities=20% Similarity=0.286 Sum_probs=104.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC----hHhh--hhceEEEcccCCCCc-ccHHHHHHcC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD----KSEW--ARVVSIVNQEPVLFS-VSVGENIAYG 637 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~----~~~l--R~~Ia~V~Q~~~LF~-gTIreNI~~G 637 (782)
+|+.++|||||||||||+++.|+|++.|++|+|.++|.|+.... ...| |..|+||+|++.++. .|++||+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987654 2233 467999999998775 4788888754
Q ss_pred CCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHH
Q 003981 638 LPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAP--ILILDEATSALDAVSER 715 (782)
Q Consensus 638 ~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~--ILILDEaTSALD~~tE~ 715 (782)
.. .+.+..+...+...+. .-..++..++||.+||||+..+|+ +|+|| |+++.|..
T Consensus 181 ~~---------------~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--- 237 (304)
T 1rj9_A 181 KA---------------RGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--- 237 (304)
T ss_dssp HH---------------HTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH---
T ss_pred Hh---------------CCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH---
Confidence 10 0111111112222111 112246777999999999999999 56666 55554432
Q ss_pred HHHHHHHHhc--CCcEEEEEecChhH
Q 003981 716 LVQDALNHLM--KGRTTLVIAHRLST 739 (782)
Q Consensus 716 ~I~~~L~~l~--~~kTvIvIaHRLst 739 (782)
+.++++. .+.|+|++||...+
T Consensus 238 ---~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 238 ---EQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp ---HHHHHHHHHHCCSEEEEECTTSS
T ss_pred ---HHHHHHHHHcCCcEEEEECCccc
Confidence 2222221 37899999997544
No 112
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.70 E-value=1.7e-17 Score=201.12 Aligned_cols=167 Identities=19% Similarity=0.155 Sum_probs=120.8
Q ss_pred ccEEEEeeEEEcCCC--CCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHH--------HcCCCCCccEEEECCeeCC
Q 003981 536 GDICLEDVYFSYPLR--PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLL--------ARFYEPTGGRITVGGEDLR 605 (782)
Q Consensus 536 g~I~f~nVsF~Y~~~--~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL--------~gly~p~~G~I~idG~di~ 605 (782)
+.|++++...-+-.. .+..+++|++|++++|+.++|+||+||||||+++.+ .|.|-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 358888876544321 235799999999999999999999999999999999 66666654332
Q ss_pred CCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHH
Q 003981 606 TFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQ 685 (782)
Q Consensus 606 ~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQ 685 (782)
++++. .+|. .+| +.|.+ -..+|+|+++
T Consensus 702 ----------~~~~d---~i~~-------~ig-------------------~~d~l--------------~~~lStf~~e 728 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG-------------------AGDSQ--------------LKGVSTFMAE 728 (934)
T ss_dssp ----------EECCS---EEEE-------ECC------------------------------------------CHHHHH
T ss_pred ----------chHHH---HHHH-------hcC-------------------chhhH--------------HHhHhhhHHH
Confidence 11110 0111 111 00110 1347888888
Q ss_pred HHHHHHHh--ccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCH
Q 003981 686 RIAIARAL--LKNAPILILDEATSALDAVSERLV-QDALNHLM--KGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTH 760 (782)
Q Consensus 686 RIaIARAL--lr~p~ILILDEaTSALD~~tE~~I-~~~L~~l~--~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth 760 (782)
+..+|+++ +.+|+++||||||+++|+.....+ ...++.+. .++|+|++||.......||++..+++|++...|+.
T Consensus 729 ~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~ 808 (934)
T 3thx_A 729 MLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTE 808 (934)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEET
T ss_pred HHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecC
Confidence 88888888 999999999999999999776666 44445543 38999999999998889999999999999988876
Q ss_pred HHH
Q 003981 761 FEL 763 (782)
Q Consensus 761 ~eL 763 (782)
+++
T Consensus 809 ~~l 811 (934)
T 3thx_A 809 ETL 811 (934)
T ss_dssp TEE
T ss_pred CcE
Confidence 665
No 113
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.69 E-value=8e-19 Score=181.99 Aligned_cols=181 Identities=14% Similarity=0.079 Sum_probs=112.4
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHH--cCCCCCccEEEECCeeCCCCChHhhhhc
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA--RFYEPTGGRITVGGEDLRTFDKSEWARV 615 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~--gly~p~~G~I~idG~di~~i~~~~lR~~ 615 (782)
++++++++.|+.- + .+|.+ .|++|+.++|+||+|||||||++.|+ ++.++.+|.+.+++.+..+ .....++.
T Consensus 7 ~~~~~i~tg~~~l-D-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF-D-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT-G-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH-H-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 6677888888621 1 23433 68999999999999999999999999 7757788888888764321 22334466
Q ss_pred eEEEcccCCCCc-ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 616 VSIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 616 Ia~V~Q~~~LF~-gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+++++|+...+. -++.++...... ...++.... . ...+-++.++...+..-.
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------------------~----~~~~~~~~~~~~~~~l~~ 133 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVG---LPSEEKFVL--------------------E----DRFNVDNFLRYIYRVVKA 133 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC----------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred cCCChHHHhhcCCEEEEEccccccc---cccccceec--------------------c----CcccHHHHHHHHHHHHHh
Confidence 888888764332 233333322100 000000000 0 011234444444444345
Q ss_pred cCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHhc-CCcEEEEEecChhHH----------Hhc-CeEEEEeC
Q 003981 695 KNAPILILDEATSALD-----AVSERLVQDALNHLM-KGRTTLVIAHRLSTV----------QNA-HQIALCSD 751 (782)
Q Consensus 695 r~p~ILILDEaTSALD-----~~tE~~I~~~L~~l~-~~kTvIvIaHRLsti----------~~a-D~IiVLd~ 751 (782)
.+|++++|||||+.+| ....+.+.+.++.+. .|+|+|+++|.+..+ ..| |+|++|++
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 7999999999999997 566666777776654 489999999999886 457 99999953
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.69 E-value=4.1e-18 Score=186.66 Aligned_cols=147 Identities=19% Similarity=0.239 Sum_probs=109.9
Q ss_pred EeeEEEcCCCCCccceeeeeE-------EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-ccEEEECCeeCCCCChHhh
Q 003981 541 EDVYFSYPLRPDVVILNGLNL-------TLKSGSVTALVGSSGAGKSTIVQLLARFYEPT-GGRITVGGEDLRTFDKSEW 612 (782)
Q Consensus 541 ~nVsF~Y~~~~~~~vL~~Isl-------~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~-~G~I~idG~di~~i~~~~l 612 (782)
.+++|+|... ..+.|+++.+ .+.+|+.++|+|||||||||++++|+|+++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5778888633 4567788776 77899999999999999999999999999997 57775544433 222 2
Q ss_pred hhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 613 ARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 613 R~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
+...++++|...-.. ..+..+ +||||
T Consensus 167 ~~~~~~v~q~~~~~~--------------~~~~~~----------------------------------------~La~a 192 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD--------------TLGFSE----------------------------------------ALRSA 192 (356)
T ss_dssp CCSSSEEEEEEBTTT--------------BSCHHH----------------------------------------HHHHH
T ss_pred hccccceeeeeeccc--------------cCCHHH----------------------------------------HHHHH
Confidence 334566766542110 111211 99999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCC
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDG 752 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G 752 (782)
|..+|++++||||| |.++.+.+.++ ...|+|+|+++|..+.+..+|||++|..|
T Consensus 193 L~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 193 LREDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp TTSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hhhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 99999999999999 77776655554 33699999999999999999999988554
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.69 E-value=7.1e-17 Score=158.88 Aligned_cols=79 Identities=29% Similarity=0.348 Sum_probs=72.2
Q ss_pred CCCCChhHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEE--E
Q 003981 676 GGLLSGGQRQRIAIARALL----KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIAL--C 749 (782)
Q Consensus 676 G~~LSGGQrQRIaIARALl----r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiV--L 749 (782)
...||||||||++||||+. ++||++||||||++||+.+++.+.+.|+++.++.++|+|||+..++..||+|+. |
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999995 678999999999999999999999999999888999999999999999999985 4
Q ss_pred eCCEE
Q 003981 750 SDGRI 754 (782)
Q Consensus 750 d~G~I 754 (782)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 67764
No 116
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.64 E-value=5.8e-18 Score=181.79 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=80.1
Q ss_pred EeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC-CCCCccEEEECCeeCCCCChHhhhhceEEE
Q 003981 541 EDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF-YEPTGGRITVGGEDLRTFDKSEWARVVSIV 619 (782)
Q Consensus 541 ~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl-y~p~~G~I~idG~di~~i~~~~lR~~Ia~V 619 (782)
+|+++.|. +..+++|++|+| +|||++|+|||||++.|.|. ..|++| |.++|.++.. .. -++.++++
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEE
Confidence 47888895 357999999988 99999999999999999998 889999 9999987653 11 24668999
Q ss_pred cccCCCC-cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC
Q 003981 620 NQEPVLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAP 698 (782)
Q Consensus 620 ~Q~~~LF-~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ 698 (782)
+|+..++ .-||.||..+|... ...++.....+ ++.. -++..+ .++|||||||+++|||+.
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~--~~~e~~~~l~~------~l~~---~~~~~~----~~~sgg~rqrv~~ara~~---- 129 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAI--NCRDCFKTIIS------YIDE---QFERYL----HDESGLNRRHIIDNRVHC---- 129 (301)
T ss_dssp EC---CCEEEEEEEEC-------------CTTHHH------HHHH---HHHHHH----HHHTSSCCTTCCCCCCCE----
T ss_pred ecCCCcccCcchhhhhhhhhhc--CcHHHHHHHHH------HHHH---HHHHHH----HHhCHHhhhhhhhhhhhh----
Confidence 9987654 56999999887321 01111111111 1111 112222 358999999999999986
Q ss_pred EEEEeCCCCC-CCHHHHHHHHHHHHHhcC--CcEEEEEecChh
Q 003981 699 ILILDEATSA-LDAVSERLVQDALNHLMK--GRTTLVIAHRLS 738 (782)
Q Consensus 699 ILILDEaTSA-LD~~tE~~I~~~L~~l~~--~kTvIvIaHRLs 738 (782)
++++||||++ ||+... +.++++.+ +.++|+..|.+.
T Consensus 130 ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999999986 999764 33444333 556777788874
No 117
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.64 E-value=8.9e-20 Score=185.16 Aligned_cols=150 Identities=15% Similarity=0.120 Sum_probs=107.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN 642 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~ 642 (782)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+||.+.++.+.++|+.... ...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~-~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLP-RKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGG-GTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccc-cCC
Confidence 5789999999999999999999999999986 5 2489999999999988888874210 001
Q ss_pred CCHHHHHHHHHHhcchhHHHhCCCC--ccccccCCCCCCChhHHHHHHHH-HHhccCCCEEEEeCCC-----------CC
Q 003981 643 VSKDDIIKAAKAANAHDFIISLPQG--YDTLVGERGGLLSGGQRQRIAIA-RALLKNAPILILDEAT-----------SA 708 (782)
Q Consensus 643 ~s~eei~~A~~~a~l~dfI~~LP~G--ldT~VGE~G~~LSGGQrQRIaIA-RALlr~p~ILILDEaT-----------SA 708 (782)
. ..+.+...+.+++..|+.| +++++.++|..+||||+||+++| |+++.+++++++|||. ..
T Consensus 79 ~-----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~ 153 (208)
T 3c8u_A 79 A-----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIR 153 (208)
T ss_dssp S-----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEE
T ss_pred C-----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEE
Confidence 1 1111222334455566655 88899999999999999999999 9999999999999985 33
Q ss_pred CCHHHHHHHHHHHHHhc-CCcEEEEEecCh
Q 003981 709 LDAVSERLVQDALNHLM-KGRTTLVIAHRL 737 (782)
Q Consensus 709 LD~~tE~~I~~~L~~l~-~~kTvIvIaHRL 737 (782)
||...+..++..+++.. .|+|..-+.||.
T Consensus 154 vd~~~~~~~~R~~~R~~~~g~t~~~~~~~~ 183 (208)
T 3c8u_A 154 LEVPMADLEARLVQRWLDHGLNHDAAVARA 183 (208)
T ss_dssp ECCCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 45555555555444432 244444444443
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.64 E-value=1.6e-17 Score=170.01 Aligned_cols=145 Identities=15% Similarity=0.145 Sum_probs=106.9
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CccEEEECCeeCCCCChHhhhhceEEEcccCCCCcc-cH----HH
Q 003981 560 NLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP--TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSV-SV----GE 632 (782)
Q Consensus 560 sl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p--~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~g-TI----re 632 (782)
.-..++|+.++|+||||||||||+++|+|+++| ..|.|.+.|.+.+. ..++.++|++|++.+|.. |+ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346789999999999999999999999999986 78999999886643 246679999999988875 33 46
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 003981 633 NIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAV 712 (782)
Q Consensus 633 NI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~ 712 (782)
|+.+....-..+.+++.+ ++..++++||| ||+.
T Consensus 86 ~~~~~~~~yg~~~~~v~~------------------------------------------~l~~G~illLD-----LD~~ 118 (219)
T 1s96_A 86 HAEVFGNYYGTSREAIEQ------------------------------------------VLATGVDVFLD-----IDWQ 118 (219)
T ss_dssp EEEETTEEEEEEHHHHHH------------------------------------------HHTTTCEEEEE-----CCHH
T ss_pred HHHHHhccCCCCHHHHHH------------------------------------------HHhcCCeEEEE-----ECHH
Confidence 665431000012233332 33346999999 9999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeCCEEEEecCHHHHHhc
Q 003981 713 SERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAR 766 (782)
Q Consensus 713 tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive~Gth~eLl~~ 766 (782)
+.+.+.+.+. +++|+++++|.++.++. |+ +++| .|+.+++.++
T Consensus 119 ~~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 119 GAQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp HHHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred HHHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 9999998875 58899999999999876 43 7777 6788888654
No 119
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.62 E-value=8e-18 Score=182.13 Aligned_cols=149 Identities=19% Similarity=0.174 Sum_probs=112.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC--------CCCccEEEECCeeCCCCC---------------hHhhhhceEEE---c
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFY--------EPTGGRITVGGEDLRTFD---------------KSEWARVVSIV---N 620 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly--------~p~~G~I~idG~di~~i~---------------~~~lR~~Ia~V---~ 620 (782)
+.++|+|++|||||||++.|+|++ .|+.|+|.|||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 889999999999998764 45778889988 7
Q ss_pred ccCC-CCcccHHHHHHcCCCCCCCCHHHHHHHH-------HHhcchhHHH--hCCCCccccccCCCCCCChhHHHHHHHH
Q 003981 621 QEPV-LFSVSVGENIAYGLPDENVSKDDIIKAA-------KAANAHDFII--SLPQGYDTLVGERGGLLSGGQRQRIAIA 690 (782)
Q Consensus 621 Q~~~-LF~gTIreNI~~G~p~~~~s~eei~~A~-------~~a~l~dfI~--~LP~GldT~VGE~G~~LSGGQrQRIaIA 690 (782)
|++. .|+.++.||+.++.| +.+.+.. +...+...+. .+.+..+... ++|||||||...+
T Consensus 85 q~~~~~~~~~v~E~~~l~~p------~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-----~ls~g~~Q~~~ad 153 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP------GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-----QFTIAQSQVGYAD 153 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH------HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-----HCHHHHHHHHTCS
T ss_pred hcCCCCCCEEEEeCCCCCCH------HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-----hchHHHHHHHhCC
Confidence 8876 478999999998854 2222221 1111211110 1111112211 5899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 003981 691 RALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRL 737 (782)
Q Consensus 691 RALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRL 737 (782)
|+++.+|+++ ||| +.+.+.|+++.++.|+++++|..
T Consensus 154 ~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 154 RILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp EEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred EEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 9999999987 888 67777888877889999999974
No 120
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.61 E-value=2.3e-16 Score=161.27 Aligned_cols=165 Identities=13% Similarity=0.045 Sum_probs=112.5
Q ss_pred ccceeeeeE-EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhh---ceEEEcccCCCCcc
Q 003981 553 VVILNGLNL-TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR---VVSIVNQEPVLFSV 628 (782)
Q Consensus 553 ~~vL~~Isl-~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~---~Ia~V~Q~~~LF~g 628 (782)
.+.|+++.. .+++|+.++|+||+|||||||++.|++...+.+|.|.+.+.+. +...+++ .+++.+|+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 81 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI---- 81 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh----
Confidence 457888887 8999999999999999999999999999888888888766533 3333332 2333333211
Q ss_pred cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCcc-ccccCCCCCCChhHHHHHHHHHHhccCCC--EEEEeCC
Q 003981 629 SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYD-TLVGERGGLLSGGQRQRIAIARALLKNAP--ILILDEA 705 (782)
Q Consensus 629 TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~Gld-T~VGE~G~~LSGGQrQRIaIARALlr~p~--ILILDEa 705 (782)
.+++.+- ......+. -.+- ...|.+|.++...+.+...+|+ ++|+|||
T Consensus 82 --~~~~~~~------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 82 --EKKLIII------------------------DALMKEKEDQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp --TTTEEEE------------------------ECCC----CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred --hCCEEEE------------------------eccccccCceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 0111111 00000000 0010 1238999998888888778999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHhc--CCcEEEEEecCh--------hHH-HhcCeEEEEeCCE
Q 003981 706 TSAL--DAVSERLVQDALNHLM--KGRTTLVIAHRL--------STV-QNAHQIALCSDGR 753 (782)
Q Consensus 706 TSAL--D~~tE~~I~~~L~~l~--~~kTvIvIaHRL--------sti-~~aD~IiVLd~G~ 753 (782)
|+.+ |+...+.+.+.|+++. .++|+|+++|.. ..+ ..||+|++|++.+
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9888 9877778888887763 488999999998 335 4599999998653
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.60 E-value=2.1e-17 Score=164.53 Aligned_cols=161 Identities=17% Similarity=0.116 Sum_probs=101.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE 641 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~ 641 (782)
.+++|+.++|+|++|||||||+++|++. |..|.|.+||.++..... -++.++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 678999999987643221 1345788888765 5678999987531
Q ss_pred CCCHHHHHHHHHHhcchhHHHhCC--CCcccc--ccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 003981 642 NVSKDDIIKAAKAANAHDFIISLP--QGYDTL--VGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLV 717 (782)
Q Consensus 642 ~~s~eei~~A~~~a~l~dfI~~LP--~GldT~--VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I 717 (782)
... . ..+....+..+. .+++.. .+.....+|+||+||+++||++.++|+++ +|++..+.+
T Consensus 77 -----~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 77 -----GRY--A-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp -----HHH--H-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred -----HHH--h-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 110 1 111111111111 011111 12334579999999999999999999976 577766666
Q ss_pred HHHHHHhcCCcEEEEEecChhHHHhcCeE
Q 003981 718 QDALNHLMKGRTTLVIAHRLSTVQNAHQI 746 (782)
Q Consensus 718 ~~~L~~l~~~kTvIvIaHRLsti~~aD~I 746 (782)
.+.++.+.+...+++.++..+.-..+|+|
T Consensus 141 ~~~~~~l~~~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 141 HSQFADLGAFEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp HHHTTCCGGGGGGEEECTTCCTTTTTTTT
T ss_pred HHHHhccCcccccEEECCCCCHHHHHHHH
Confidence 66665443222344555543322334443
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=5.1e-16 Score=172.60 Aligned_cols=179 Identities=16% Similarity=0.182 Sum_probs=115.7
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcE--EEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhh
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSV--TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~--vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~ 614 (782)
.+++++ +++|++ .+ |+++||++++|+. +||||+||||||||+++|+|+. ++|.++...++...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 366667 888862 35 9999999999999 9999999999999999999994 5666666555555677
Q ss_pred ceEEEcccCCCC-cccHHHHHHcCCCCCCCCHHHHHHH----HHHhcchhHHHh-------CCCCcccc-------ccCC
Q 003981 615 VVSIVNQEPVLF-SVSVGENIAYGLPDENVSKDDIIKA----AKAANAHDFIIS-------LPQGYDTL-------VGER 675 (782)
Q Consensus 615 ~Ia~V~Q~~~LF-~gTIreNI~~G~p~~~~s~eei~~A----~~~a~l~dfI~~-------LP~GldT~-------VGE~ 675 (782)
.++|++|++.++ +-|+.||+.||.. .+.+.-++. ++ ....+++.. ++..-|+. |-+.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~---~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~ 158 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ---INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPT 158 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC----CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCC
T ss_pred eEEEEeecCccccccchhhhhhhhhc---cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCC
Confidence 899999999987 5799999999842 333222211 11 112222222 22223332 2355
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCcEEEEEec
Q 003981 676 GGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNH-LM-KGRTTLVIAH 735 (782)
Q Consensus 676 G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~-l~-~~kTvIvIaH 735 (782)
+..|+-.+ +.|+|+|-.+++|+++|++|..|...--..+.+.|++ +. .|..++.|+.
T Consensus 159 ~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 159 GHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp C---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 56677776 8999999999999999999999988655666666765 43 4667777774
No 123
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.57 E-value=3.7e-15 Score=151.21 Aligned_cols=150 Identities=16% Similarity=0.152 Sum_probs=97.6
Q ss_pred cceeeeeE-EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHH
Q 003981 554 VILNGLNL-TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (782)
Q Consensus 554 ~vL~~Isl-~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIre 632 (782)
+.|+++.. .+++|+.++|+|++|||||||++.+++ .+..+.+++++.+ .++...++ +
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~------------------~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLV------------------Q 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHH------------------H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHH------------------H
Confidence 45666654 689999999999999999999999999 4334444444332 12222222 2
Q ss_pred HHH-cCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChh--HHHHHHHHHHhccC-CCEEEEeCCCCC
Q 003981 633 NIA-YGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGG--QRQRIAIARALLKN-APILILDEATSA 708 (782)
Q Consensus 633 NI~-~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGG--QrQRIaIARALlr~-p~ILILDEaTSA 708 (782)
... +| .+.+++. ..+ .+. ..+++ |+|+++.+|+++++ |+++|+||||+.
T Consensus 65 ~~~~~~-----~~~~~~~------------~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 65 MAETRG-----LNPEEAL------------SRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHTTT-----CCHHHHH------------HHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHhcC-----CChHHHh------------hcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 111 11 1222211 111 011 12333 47899999999986 999999999999
Q ss_pred CCHHHH--------HHHHHHHHHhcC--CcEEEEEecChh-------------HH-HhcCeEEEEeCC
Q 003981 709 LDAVSE--------RLVQDALNHLMK--GRTTLVIAHRLS-------------TV-QNAHQIALCSDG 752 (782)
Q Consensus 709 LD~~tE--------~~I~~~L~~l~~--~kTvIvIaHRLs-------------ti-~~aD~IiVLd~G 752 (782)
+|...+ ..+.+.|+++.+ ++|+|+++|... .+ ..||.|++|++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 997432 334444665543 899999999865 33 469999999865
No 124
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.56 E-value=1.8e-15 Score=183.00 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=103.1
Q ss_pred cEEEEeeEEEcC----CCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh
Q 003981 537 DICLEDVYFSYP----LRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW 612 (782)
Q Consensus 537 ~I~f~nVsF~Y~----~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l 612 (782)
.|++++..--.- ...+..|++||||++++|+.++|+||+||||||+++.+.+..- +
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~--------------------~ 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI--------------------M 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--------------------H
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--------------------H
Confidence 577776543220 1124679999999999999999999999999999999875311 0
Q ss_pred hhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 613 ARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 613 R~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
.+.-.+||++..-+ .+.++| |. ..++.|.+ ..+-..+|+|++|+..|+|+
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i-~~----------------~ig~~d~l-----------~~~~stfs~em~~~~~il~~ 749 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGI-FT----------------RMGAADNI-----------YKGRSTFMEELTDTAEIIRK 749 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEE-EE----------------EC---------------------CCHHHHHHHHHHHHHH
T ss_pred hhcCccccchhhhh--hHHHHH-HH----------------hCChHHHH-----------HHhHHHhhHHHHHHHHHHHh
Confidence 01111233221100 000111 00 00111111 12225689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc--CCcEEEEEecChhHHHhcCeE
Q 003981 693 LLKNAPILILDEATSALDAVSERLVQ-DALNHLM--KGRTTLVIAHRLSTVQNAHQI 746 (782)
Q Consensus 693 Llr~p~ILILDEaTSALD~~tE~~I~-~~L~~l~--~~kTvIvIaHRLsti~~aD~I 746 (782)
..+|+++||||||+++|+.....+. ..++.+. .|+|+|++||.+.....||+.
T Consensus 750 -a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 750 -ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp -CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred -ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 8999999999999999997777766 4455542 489999999998877766653
No 125
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.55 E-value=4.9e-15 Score=157.04 Aligned_cols=151 Identities=17% Similarity=0.215 Sum_probs=103.4
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHH-cCCCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA-YGLPD 640 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~-~G~p~ 640 (782)
.+++|+.++|+|++|||||||++.+++... .|++. .|.+..+ +..+.|++.+... ..+.+++. +|.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh--
Confidence 378999999999999999999999998664 57663 3543321 3458888876543 33444432 342
Q ss_pred CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC--CCCHHHH---H
Q 003981 641 ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATS--ALDAVSE---R 715 (782)
Q Consensus 641 ~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTS--ALD~~tE---~ 715 (782)
+...++..++++...+.+ ..+.....||+||+|++ |+++++|+++||||||+ ++|.... .
T Consensus 93 -~~~~~~~~~~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 93 -HLSAEERQAVADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp -TSCHHHHHHHHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred -hcChhhhhhccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 234444444444444332 23445677999998865 78899999999999999 8997443 6
Q ss_pred HHHHHHHHhc--CCcEEEEEecChhHH
Q 003981 716 LVQDALNHLM--KGRTTLVIAHRLSTV 740 (782)
Q Consensus 716 ~I~~~L~~l~--~~kTvIvIaHRLsti 740 (782)
.+.+.|.++. .|+|+|+|+|.....
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 7777777764 389999999987654
No 126
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.54 E-value=2.4e-15 Score=180.26 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=101.7
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CccEEEECCeeCCCCChHhhhhceEEEcccCCCCc-cc
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS-VS 629 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~-gT 629 (782)
+..+++|+||+ ++|+.++|+||+||||||++++++|+.-+ ..| ..+.. -+..++++.| +|. -+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa-----~~~~i~~~~~---i~~~~~ 658 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA-----QKVEIGPIDR---IFTRVG 658 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-----SEEEECCCCE---EEEEEC
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-----hcccceeHHH---HHhhCC
Confidence 35789999999 99999999999999999999999997432 222 11111 1245677666 443 24
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 003981 630 VGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSAL 709 (782)
Q Consensus 630 IreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSAL 709 (782)
+.||+..+ -..+|+|+++ ++.+...+.+|+++||||||+++
T Consensus 659 ~~d~l~~~--------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gt 699 (800)
T 1wb9_A 659 AADDLASG--------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGT 699 (800)
T ss_dssp -------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCS
T ss_pred HHHHHHhh--------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCC
Confidence 44444322 0235666654 44444568999999999999888
Q ss_pred CHHH-HHHHHHHHHHhc--CCcEEEEEecChhHHHhcCeEEEEeCCEEEE
Q 003981 710 DAVS-ERLVQDALNHLM--KGRTTLVIAHRLSTVQNAHQIALCSDGRIAE 756 (782)
Q Consensus 710 D~~t-E~~I~~~L~~l~--~~kTvIvIaHRLsti~~aD~IiVLd~G~Ive 756 (782)
|+.. ...+.+.++.+. .++|+|++||.......||++..+++|++..
T Consensus 700 d~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 700 STYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 8843 333355555553 3899999999998888899887777777654
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.53 E-value=7.6e-15 Score=151.30 Aligned_cols=148 Identities=20% Similarity=0.253 Sum_probs=95.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHc--CCCC-----CccEEEECCeeCCC-CChHhhhhceEEEcccCCCCcccHHHH
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLAR--FYEP-----TGGRITVGGEDLRT-FDKSEWARVVSIVNQEPVLFSVSVGEN 633 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~g--ly~p-----~~G~I~idG~di~~-i~~~~lR~~Ia~V~Q~~~LF~gTIreN 633 (782)
-+++|+.++|+||+|||||||++.|++ ..+| .+|.+++++.+.-. -....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5655 67899999875311 1133455667777765 5677
Q ss_pred HHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH-
Q 003981 634 IAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAV- 712 (782)
Q Consensus 634 I~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~- 712 (782)
+.+..+ .+.++..+.++ .+.+.+.. .+|+++|+||+|+.+|..
T Consensus 93 ~~~~~~---~~~~~~~~~~~--~~~~~~~~-------------------------------~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA---FNTDHQTQLLY--QASAMMVE-------------------------------SRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC---CSHHHHHHHHH--HHHHHHHH-------------------------------SCEEEEEEETSSGGGC---
T ss_pred eEEEec---CCHHHHHHHHH--HHHHHHhc-------------------------------CCceEEEEeCchHHHHHHh
Confidence 766532 23344333321 11111111 689999999999999985
Q ss_pred ------HHHH--HH---HHHHHhc--CCcEEEEEecChhHHH--------------------hcCeEEEEeCC
Q 003981 713 ------SERL--VQ---DALNHLM--KGRTTLVIAHRLSTVQ--------------------NAHQIALCSDG 752 (782)
Q Consensus 713 ------tE~~--I~---~~L~~l~--~~kTvIvIaHRLsti~--------------------~aD~IiVLd~G 752 (782)
+++. +. +.|.++. .++|+|+++|-..... .||.|++|++|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 4332 33 3344332 3899999999654332 58999999876
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.48 E-value=1.1e-16 Score=174.56 Aligned_cols=181 Identities=12% Similarity=0.098 Sum_probs=122.0
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh----Hhhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK----SEWA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~----~~lR 613 (782)
|+++|+++.|. ...+|+++||++++|++++|+|++|||||||++.|+|++.|++|+|.+.|.|+..... ...|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 67788999995 3468999999999999999999999999999999999999999999999998754331 3457
Q ss_pred hceEEEcccCCCCcc-------------cHHHHHHc----CC-------CCCCCCHHHHHHHHHH-------------hc
Q 003981 614 RVVSIVNQEPVLFSV-------------SVGENIAY----GL-------PDENVSKDDIIKAAKA-------------AN 656 (782)
Q Consensus 614 ~~Ia~V~Q~~~LF~g-------------TIreNI~~----G~-------p~~~~s~eei~~A~~~-------------a~ 656 (782)
..+++|+|++.+|.. +++|.+.. |. |.-.-++..+.+.+.. ..
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 889999999999852 23333210 00 0000011111111000 00
Q ss_pred chhHHHhCCCCcc-cccc-CCCCCCChhHHHHHHHHHHhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 003981 657 AHDFIISLPQGYD-TLVG-ERGGLLSGGQRQRIAIARALLK------NAPILILDEATSALDAVSERLVQDALNHLM 725 (782)
Q Consensus 657 l~dfI~~LP~Gld-T~VG-E~G~~LSGGQrQRIaIARALlr------~p~ILILDEaTSALD~~tE~~I~~~L~~l~ 725 (782)
+.+.+...|+-+- +.+- .....+|+|++|+++.|++++. +|+|+. |||+|.+.-..+.+.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 1111112221100 1111 0123479999999999999998 688887 99999988888888887653
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.47 E-value=2.1e-14 Score=161.52 Aligned_cols=155 Identities=20% Similarity=0.243 Sum_probs=105.4
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC----hHh--hhhceEEEcccCCCC-cc
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD----KSE--WARVVSIVNQEPVLF-SV 628 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~----~~~--lR~~Ia~V~Q~~~LF-~g 628 (782)
-+++||++++|++++|||+||||||||++.|+|++.|++|+|.++|.|+.... +.. .|..|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36789999999999999999999999999999999999999999988765431 123 377899999998765 57
Q ss_pred cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCcccccc-CCCCCCChhHHHHHHHHHHhccC-C-CEEEEeCC
Q 003981 629 SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVG-ERGGLLSGGQRQRIAIARALLKN-A-PILILDEA 705 (782)
Q Consensus 629 TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VG-E~G~~LSGGQrQRIaIARALlr~-p-~ILILDEa 705 (782)
|+++||.++... .. |+|. .||.=. .+-.++-.--+||+.++|++..+ | .+|+..+|
T Consensus 363 tV~e~l~~a~~~-~~---------------DvVL-----IDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDa 421 (503)
T 2yhs_A 363 VIFDAIQAAKAR-NI---------------DVLI-----ADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421 (503)
T ss_dssp HHHHHHHHHHHT-TC---------------SEEE-----ECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEG
T ss_pred HHHHHHHHHHhc-CC---------------CEEE-----EeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecC
Confidence 999999876311 11 1110 111100 00011112235889999988654 4 35555558
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEec
Q 003981 706 TSALDAVSERLVQDALNHLMKGRTTLVIAH 735 (782)
Q Consensus 706 TSALD~~tE~~I~~~L~~l~~~kTvIvIaH 735 (782)
|++.|.... .+.+++. -+.|.|++||
T Consensus 422 ttGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 422 STGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp GGTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred cccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 888766432 1223322 3789999999
No 130
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.44 E-value=7.5e-16 Score=149.50 Aligned_cols=89 Identities=18% Similarity=0.111 Sum_probs=75.0
Q ss_pred EEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEE
Q 003981 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIV 619 (782)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 619 (782)
-+|++++|. +..+++++||+|++|++++|+||+|||||||+++|+|++ |++|+|.++|.++.+. ...+ .+|
T Consensus 10 ~~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~ 80 (158)
T 1htw_A 10 DEFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKM 80 (158)
T ss_dssp SHHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEE
T ss_pred CHHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccc
Confidence 346677784 357899999999999999999999999999999999999 9999999999987521 1122 279
Q ss_pred cccCCCCcccHHHHHH-cC
Q 003981 620 NQEPVLFSVSVGENIA-YG 637 (782)
Q Consensus 620 ~Q~~~LF~gTIreNI~-~G 637 (782)
+|++.+|.-|+.||+. +|
T Consensus 81 ~q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 81 IYHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEEECTTCSCTTHHHHST
T ss_pred eeccccccCCcHHHHHHcC
Confidence 9999999889999995 45
No 131
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.42 E-value=2.8e-13 Score=149.54 Aligned_cols=77 Identities=30% Similarity=0.379 Sum_probs=69.5
Q ss_pred CCCChhHHHHH------HHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEE
Q 003981 677 GLLSGGQRQRI------AIARALLKN-APILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALC 749 (782)
Q Consensus 677 ~~LSGGQrQRI------aIARALlr~-p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVL 749 (782)
..||||||||+ ++|||+..+ |++|||||||++||+.+...+.+.|.++.+++|+|+|||.+.....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999987 678999999 99999999999999999999999999876678999999999877779999999
Q ss_pred e-CCE
Q 003981 750 S-DGR 753 (782)
Q Consensus 750 d-~G~ 753 (782)
+ +|.
T Consensus 359 ~k~~~ 363 (371)
T 3auy_A 359 KKDGN 363 (371)
T ss_dssp EESSS
T ss_pred EecCC
Confidence 7 443
No 132
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.42 E-value=5.2e-16 Score=173.28 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=102.6
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC----CChHhhh
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT----FDKSEWA 613 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~----i~~~~lR 613 (782)
++++|++|.|+ ...+|+++ + .++|+.++|+||+||||||++++|+|+++|++|+|.++|.++.. ++...++
T Consensus 144 ~~l~~Lg~~~~---~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 144 LDLHSLGMTAH---NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCGGGSCCCHH---HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCHHHcCCCHH---HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 55667777664 34578888 5 48999999999999999999999999999999999999988742 1123345
Q ss_pred hceEEEc---------ccCCCC--c-----ccHHHHHHcCCCC-------CCCCHHHHHHHHHHhcchhHHHhCCCCccc
Q 003981 614 RVVSIVN---------QEPVLF--S-----VSVGENIAYGLPD-------ENVSKDDIIKAAKAANAHDFIISLPQGYDT 670 (782)
Q Consensus 614 ~~Ia~V~---------Q~~~LF--~-----gTIreNI~~G~p~-------~~~s~eei~~A~~~a~l~dfI~~LP~GldT 670 (782)
+.+++++ |+|.++ . .|+++|+.++... ...+..+..+.+...++.++.
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--------- 289 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--------- 289 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---------
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---------
Confidence 5666655 998763 2 3888888764210 001123344445444444331
Q ss_pred cccCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 003981 671 LVGERGGLLSGGQRQRIAIARALLKNAPILI 701 (782)
Q Consensus 671 ~VGE~G~~LSGGQrQRIaIARALlr~p~ILI 701 (782)
...+|||||+|| |||||+.+|++..
T Consensus 290 ----~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ----ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp ----HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred ----HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 235799999999 9999999999875
No 133
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.41 E-value=7.1e-16 Score=176.59 Aligned_cols=176 Identities=14% Similarity=0.171 Sum_probs=124.4
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCc--ccH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS--VSV 630 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~--gTI 630 (782)
..+++++++.+++|+.++|+||+||||||++++|+|+++|++|.|+++|.+--.++ . ++.++++.|+.. .. .|+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~--~-~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY--H-ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC--C-SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC--C-CCeEEEEeeccc-ccCCcCH
Confidence 45789999999999999999999999999999999999999999999987522222 1 456888888776 43 378
Q ss_pred HHHHHcC---CCC----CCCCHHHHHHHHHHhcc-------------hhHHHh---CCCCcccccc-------CCCCCCC
Q 003981 631 GENIAYG---LPD----ENVSKDDIIKAAKAANA-------------HDFIIS---LPQGYDTLVG-------ERGGLLS 680 (782)
Q Consensus 631 reNI~~G---~p~----~~~s~eei~~A~~~a~l-------------~dfI~~---LP~GldT~VG-------E~G~~LS 680 (782)
++++... +|+ .+.+++|...+++.++. .+.+.. .|.|....+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 8887533 221 14666677666666541 122222 2334333222 2334689
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CcEEEE--EecChhHHHh-cC
Q 003981 681 GGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMK-GRTTLV--IAHRLSTVQN-AH 744 (782)
Q Consensus 681 GGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~-~kTvIv--IaHRLsti~~-aD 744 (782)
||||||.++|. + | |++||+++.+.+.+.|.++.+ ++|+|+ +||.++.+.. |+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999988751 1 6 999999887777666766643 788875 8999998754 54
No 134
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.40 E-value=1.4e-16 Score=158.60 Aligned_cols=170 Identities=15% Similarity=0.078 Sum_probs=106.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCC-cccHHHHHHcCCCCCCCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLF-SVSVGENIAYGLPDENVS 644 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF-~gTIreNI~~G~p~~~~s 644 (782)
|+.++|+||+|||||||++.|++ |.+|.|.++|.++... ..+++++|+...+ ..|+++|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68899999999999999999997 6789999999765332 2356777765332 34777777532
Q ss_pred HHHHHHHHHHhcchhHHHhCCCCccccccCCCCCC--ChhHHHHHHHHH------HhccCCCEEEEeCCCCCCCHHHHHH
Q 003981 645 KDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLL--SGGQRQRIAIAR------ALLKNAPILILDEATSALDAVSERL 716 (782)
Q Consensus 645 ~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~L--SGGQrQRIaIAR------ALlr~p~ILILDEaTSALD~~tE~~ 716 (782)
..... ..+. +.|...-.+-.. . +.-..+ |+|++|++.++. +++++++...+|+ .+|+...+.
T Consensus 66 ---~~~~~-~~~~-~~ild~~~~~~~-~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 66 ---TVNFL-LAQN-DVVLDYIAFPDE-A-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp ---HHHHH-HTTC-EEEEESCCCHHH-H-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred ---HHHHH-hcCC-cEEEeeccCHHH-H-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 00011 0110 111100000000 0 000124 889999988888 8888888888884 789866666
Q ss_pred HHHHHHHhc-CCcEEEEEecC-hhHHHh-cCeEEEEeCCEEEEecCHHHHH
Q 003981 717 VQDALNHLM-KGRTTLVIAHR-LSTVQN-AHQIALCSDGRIAELGTHFELL 764 (782)
Q Consensus 717 I~~~L~~l~-~~kTvIvIaHR-Lsti~~-aD~IiVLd~G~Ive~Gth~eLl 764 (782)
.+.+..+. .+.|+|..+|. ++.+.. ||+|+ ++|+|+..|+.+-|-
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred -HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 66676654 35788888999 888865 99998 999999999987663
No 135
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=1.3e-13 Score=150.49 Aligned_cols=137 Identities=19% Similarity=0.198 Sum_probs=80.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc-CCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCC-cccHHHHHHcCCCCCCCCH
Q 003981 568 VTALVGSSGAGKSTIVQLLAR-FYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLF-SVSVGENIAYGLPDENVSK 645 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~g-ly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF-~gTIreNI~~G~p~~~~s~ 645 (782)
.+.|+||+|+||||+++.|+| ++.|+.|.|.++|.+...... -+..+++++|++++. +.+ ..+. ...
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~----~~~ 106 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPS-----DMGN----NDR 106 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-------------CCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHh-----hcCC----cch
Confidence 399999999999999999999 899999999999988764332 377899999988763 211 0110 112
Q ss_pred HHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 003981 646 DDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLM 725 (782)
Q Consensus 646 eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~ 725 (782)
+.+.+.++.+.. . .+++..+ .||| +..+|+|+|||||++ ||..+...+.+.|++..
T Consensus 107 ~~~~~~i~~~~~-----~--~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 107 IVIQELLKEVAQ-----M--EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp HHHHHHHHHHTT-----T--TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHH-----h--ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 233333322211 0 1111111 5676 788999999999999 99999999999999887
Q ss_pred CCcEEEEEecChhH
Q 003981 726 KGRTTLVIAHRLST 739 (782)
Q Consensus 726 ~~kTvIvIaHRLst 739 (782)
+++++|++||+++.
T Consensus 163 ~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 KNIRLIMVCDSMSP 176 (354)
T ss_dssp TTEEEEEEESCSCS
T ss_pred CCCEEEEEeCCHHH
Confidence 78899999999753
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.37 E-value=2.9e-13 Score=146.49 Aligned_cols=166 Identities=17% Similarity=0.150 Sum_probs=109.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChH----hhhhc--eEEEcccCCCCc-ccHHHHH
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS----EWARV--VSIVNQEPVLFS-VSVGENI 634 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~----~lR~~--Ia~V~Q~~~LF~-gTIreNI 634 (782)
..++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+...... .|+++ +.+++|+..++. .|++|||
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999876643 34444 459999988875 6899999
Q ss_pred HcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 003981 635 AYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSE 714 (782)
Q Consensus 635 ~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE 714 (782)
.++.. .+ .|.+. .||. |-.. .-..=-++.-.|+|++..++++++||..|. .|....
T Consensus 205 ~~~~~---------------~~-~d~vl-----iDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~ 260 (328)
T 3e70_C 205 QHAKA---------------RG-IDVVL-----IDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ 260 (328)
T ss_dssp HHHHH---------------HT-CSEEE-----EEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH
T ss_pred HHHHh---------------cc-chhhH-----Hhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH
Confidence 86521 00 01100 2221 1000 000112334459999999999999996655 343322
Q ss_pred HHHHHHHHHhcCCcEEEEEecChh---------HH-HhcCeEEEEeCCEEE
Q 003981 715 RLVQDALNHLMKGRTTLVIAHRLS---------TV-QNAHQIALCSDGRIA 755 (782)
Q Consensus 715 ~~I~~~L~~l~~~kTvIvIaHRLs---------ti-~~aD~IiVLd~G~Iv 755 (782)
. +.+.+. .+.|.|++||--. .+ ...-.|..+..|+-+
T Consensus 261 ~---~~~~~~-~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 261 A---RQFNEA-VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp H---HHHHHH-SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred H---HHHHHh-cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 1 223221 4789999999432 11 123468888888765
No 137
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.35 E-value=1.5e-14 Score=150.42 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=108.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH---cCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCc-ccHHHHHHcC---
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLA---RFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS-VSVGENIAYG--- 637 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~---gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~-gTIreNI~~G--- 637 (782)
++++++|+|++|||||||+++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.++. .|+.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999887532 234556777788877655 5899998641
Q ss_pred ----------CCCCCCCHHHHHHHHHHhcchhHHH--hCCC--CccccccCCCCCCChhHHHHHHHHHHh-ccCCCEEEE
Q 003981 638 ----------LPDENVSKDDIIKAAKAANAHDFII--SLPQ--GYDTLVGERGGLLSGGQRQRIAIARAL-LKNAPILIL 702 (782)
Q Consensus 638 ----------~p~~~~s~eei~~A~~~a~l~dfI~--~LP~--GldT~VGE~G~~LSGGQrQRIaIARAL-lr~p~ILIL 702 (782)
.| .+.++.....+.... +.+. ..|. .++-....+...||| |+ ||+ +.+|++++|
T Consensus 102 ~~~~~~il~g~~---~~~~~~~~l~~~~~~-~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lll 170 (246)
T 2bbw_A 102 RRGQHWLLDGFP---RTLGQAEALDKICEV-DLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGI 170 (246)
T ss_dssp CTTSCEEEESCC---CSHHHHHHHHTTCCC-CEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTB
T ss_pred cCCCeEEEECCC---CCHHHHHHHHhhcCC-CEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccc
Confidence 11 122222211110000 0000 0000 011111223456898 66 899 999999999
Q ss_pred e----CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEeC
Q 003981 703 D----EATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSD 751 (782)
Q Consensus 703 D----EaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd~ 751 (782)
| |||+++|..++..+.+.|+++.+.... -+....+.++++++|.
T Consensus 171 D~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~-----v~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 171 DDVTGEPLVQQEDDKPEAVAARLRQYKDVAKP-----VIELYKSRGVLHQFSG 218 (246)
T ss_dssp CTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHH-----HHHHHHHTTCEEEEEC
T ss_pred ccccccccccCCCCcHHHHHHHHHHHHHhHHH-----HHHHHhhcCcEEEECC
Confidence 9 999999999999999998876432100 0123344567777765
No 138
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.35 E-value=5.3e-13 Score=145.52 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=82.8
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCccEEEEC-CeeCCCCChHhhhhceEEEcccCCCCcc-cHH
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-PTGGRITVG-GEDLRTFDKSEWARVVSIVNQEPVLFSV-SVG 631 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-p~~G~I~id-G~di~~i~~~~lR~~Ia~V~Q~~~LF~g-TIr 631 (782)
-++++++. .+|++++|+|+||||||||+|+|+|+.. |..|+|.++ |.+.. ...+..+++++|+++++.. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 47777775 4899999999999999999999999999 999999997 76542 2346679999999998864 899
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 003981 632 ENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL 694 (782)
Q Consensus 632 eNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl 694 (782)
+|-.. ..+.+++.+. ..+++..+ |+.-.....-.+|| ||+||++||++++
T Consensus 280 e~~l~-----~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGLW-----HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCCC-----CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhhc-----CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 96332 2455555332 33333332 33333445557899 9999999999974
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.33 E-value=1.1e-12 Score=145.74 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=97.5
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHH--HHcCCCCCcc-----EEEECCeeC-CCCChHhhhhceEEEcccCCCCcccHHHH
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQL--LARFYEPTGG-----RITVGGEDL-RTFDKSEWARVVSIVNQEPVLFSVSVGEN 633 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~L--L~gly~p~~G-----~I~idG~di-~~i~~~~lR~~Ia~V~Q~~~LF~gTIreN 633 (782)
-|++|+.++|+||||||||||++. +.+..+++.| .|++++.+. +......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4567666444 899999863 22223334566777666 67888
Q ss_pred HHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc--cCCCEEEEeCCCCCCCH
Q 003981 634 IAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL--KNAPILILDEATSALDA 711 (782)
Q Consensus 634 I~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl--r~p~ILILDEaTSALD~ 711 (782)
|.+..+ .+.++..+.. .-+++++ .+|+++|+||+|+.+|.
T Consensus 247 i~~~~~---~~~~~~~~~l-----------------------------------~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 247 VAYARA---YNADHQLRLL-----------------------------------DAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp EEEEEC---CSHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred EEEecc---CChHHHHHHH-----------------------------------HHHHHHHHhcCCceEEecchhhhCch
Confidence 887643 2233322222 1122221 47999999999999997
Q ss_pred HHH------------HHHHHHHHHhc--CCcEEEEEecChh-------------------HHHh-cCeEEEEeCCE
Q 003981 712 VSE------------RLVQDALNHLM--KGRTTLVIAHRLS-------------------TVQN-AHQIALCSDGR 753 (782)
Q Consensus 712 ~tE------------~~I~~~L~~l~--~~kTvIvIaHRLs-------------------ti~~-aD~IiVLd~G~ 753 (782)
+.. ..+.+.|+++. .++|+|+|+|-.+ .+.+ ||.+++|++|+
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 543 44556666654 3899999999832 2333 89999998764
No 140
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.30 E-value=4.3e-15 Score=152.92 Aligned_cols=185 Identities=15% Similarity=0.175 Sum_probs=85.4
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHH-cCC------------CCCccEEEECCeeCCCCChHhhhhceEEEc
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA-RFY------------EPTGGRITVGGEDLRTFDKSEWARVVSIVN 620 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~-gly------------~p~~G~I~idG~di~~i~~~~lR~~Ia~V~ 620 (782)
...+++||++++|++++|+||||||||||+++|+ |++ +|..|++ +|.++...+...+... ..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 4578999999999999999999999999999999 999 6777765 6665555555554432 23
Q ss_pred ccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhC-CCCccccccCCCCCCChhHHHHH-HHHH-HhccCC
Q 003981 621 QEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISL-PQGYDTLVGERGGLLSGGQRQRI-AIAR-ALLKNA 697 (782)
Q Consensus 621 Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~L-P~GldT~VGE~G~~LSGGQrQRI-aIAR-ALlr~p 697 (782)
++.+++.+++.+|+ +|.+. +++.++++... ..|..+ +.|.. .-+++. .-++ .++.+|
T Consensus 90 ~~~~~~~~~~~~~~-~~~~~-----~~i~~~~~~~~--~vild~~~~g~~------------~~~~~~~~~~~~v~v~~~ 149 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YGVPR-----KNLEDNVDKGV--STLLVIDWQGAF------------KFMEMMREHVVSIFIMPP 149 (231)
T ss_dssp TTCEEEEEEETTEE-EEEEC-----TTHHHHHHHTC--EEEEECCHHHHH------------HHHHHSGGGEEEEEEECS
T ss_pred cCceehhhhhcccc-CCCCH-----HHHHHHHHcCC--eEEEEcCHHHHH------------HHHHhcCCCeEEEEEECC
Confidence 55555555666665 55331 23444433211 111111 11111 114444 2233 346788
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC------CcEEEEEecChhH-HHhcCeEEEEeCCEEEEecCHHHH
Q 003981 698 PILILDEATSALDAVSERLVQDALNHLMK------GRTTLVIAHRLST-VQNAHQIALCSDGRIAELGTHFEL 763 (782)
Q Consensus 698 ~ILILDEaTSALD~~tE~~I~~~L~~l~~------~kTvIvIaHRLst-i~~aD~IiVLd~G~Ive~Gth~eL 763 (782)
+..+|||.+++.|..++..+++.|++... ..+.|++.|.+.. .+..++++...+++...+++.+++
T Consensus 150 ~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~~~~~~~~~ 222 (231)
T 3lnc_A 150 SMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTCRQVGLREL 222 (231)
T ss_dssp CHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGGGEESHHHH
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccccCcchhhH
Confidence 88899999999999998888777754432 2344555554443 233444444444444444444433
No 141
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.28 E-value=2.5e-12 Score=123.35 Aligned_cols=91 Identities=20% Similarity=0.245 Sum_probs=69.6
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCcc--EEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHH
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG--RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G--~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIre 632 (782)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999987 57 566655432211
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 003981 633 NIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAV 712 (782)
Q Consensus 633 NI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~ 712 (782)
+++.+|++|||||+++ +|..
T Consensus 79 -----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~ 98 (149)
T 2kjq_A 79 -----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNE 98 (149)
T ss_dssp -----------------------------------------------------------GGGGGCSEEEEESTTC-CCSH
T ss_pred -----------------------------------------------------------HHHhCCCEEEEeCccc-cChH
Confidence 3467899999999998 5554
Q ss_pred HHHHHHHHHHHhc-CCcE-EEEEecC
Q 003981 713 SERLVQDALNHLM-KGRT-TLVIAHR 736 (782)
Q Consensus 713 tE~~I~~~L~~l~-~~kT-vIvIaHR 736 (782)
.++.+.+.++++. +++| +|+++|+
T Consensus 99 ~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 99 EQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 4777888877654 4677 7777775
No 142
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.27 E-value=6.4e-14 Score=143.15 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=107.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC---CCCccEEEE--------CCeeCCC-CChHhhhhceEEEcccC------CCCc
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFY---EPTGGRITV--------GGEDLRT-FDKSEWARVVSIVNQEP------VLFS 627 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly---~p~~G~I~i--------dG~di~~-i~~~~lR~~Ia~V~Q~~------~LF~ 627 (782)
+..++|+|++||||||++++|.+.| .++.|+|.. +|.++.+ ....++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999887 788999987 7887763 56678999999999986 5677
Q ss_pred ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccc-cCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC
Q 003981 628 VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLV-GERGGLLSGGQRQRIAIARALLKNAPILILDEAT 706 (782)
Q Consensus 628 gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~V-GE~G~~LSGGQrQRIaIARALlr~p~ILILDEaT 706 (782)
.++.+|+. ++++.+++..+..+++|.....+.++.+ .++|.-++|+ .++++++++++++|+.+++
T Consensus 85 ~~v~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR---------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT---------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC---------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 78888764 4788999999999999999888887776 4677888987 5778889999999998886
Q ss_pred C
Q 003981 707 S 707 (782)
Q Consensus 707 S 707 (782)
.
T Consensus 151 ~ 151 (227)
T 1cke_A 151 S 151 (227)
T ss_dssp H
T ss_pred H
Confidence 4
No 143
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.23 E-value=2.3e-14 Score=151.74 Aligned_cols=144 Identities=18% Similarity=0.152 Sum_probs=106.7
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccC-CCCc-ccH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEP-VLFS-VSV 630 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~-~LF~-gTI 630 (782)
+.+++++++++++| ++|+||+|||||||+++|++.+.+ |.|.++|.++.+....+.++++++++|++ ..+. -++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 45899999999999 999999999999999999999987 89999999988777777888899999986 3443 477
Q ss_pred HHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC---
Q 003981 631 GENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATS--- 707 (782)
Q Consensus 631 reNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTS--- 707 (782)
.|||.+..+. ...++. ....+.+.. .-..|||||+||..|++|+..+|++| |||+.
T Consensus 109 ~Deid~~~~~--r~~~~~------~~~~~~~~~-----------~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~g 167 (274)
T 2x8a_A 109 FDEVDALCPR--RSDRET------GASVRVVNQ-----------LLTEMDGLEARQQVFIMAATNRPDII--DPAILRPG 167 (274)
T ss_dssp EETCTTTCC-----------------CTTHHHH-----------HHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTT
T ss_pred eehhhhhhcc--cCCCcc------hHHHHHHHH-----------HHHhhhcccccCCEEEEeecCChhhC--CHhhcCcc
Confidence 8888765321 111110 001122111 12358999999999999999999974 99974
Q ss_pred ---------CCCHHHHHHHHHHH
Q 003981 708 ---------ALDAVSERLVQDAL 721 (782)
Q Consensus 708 ---------ALD~~tE~~I~~~L 721 (782)
.-|.+.+..|.+.+
T Consensus 168 Rfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 168 RLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHHHH
Confidence 33667777776654
No 144
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.21 E-value=2.1e-12 Score=138.55 Aligned_cols=118 Identities=19% Similarity=0.129 Sum_probs=81.6
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEE---CCeeCCCCChHhhhhceEEEcccCCCC------cccHH
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV---GGEDLRTFDKSEWARVVSIVNQEPVLF------SVSVG 631 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~i---dG~di~~i~~~~lR~~Ia~V~Q~~~LF------~gTIr 631 (782)
+++.+|++++|+|+||||||||+|+|+ +.+|++|+|.+ +|.++........++.++||+|+|-+. +-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 355679999999999999999999999 99999999999 999887654221223699999999653 5678
Q ss_pred HHH--HcCC--------C---CCCCCHHHHHHHHHHhcchh-HHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 003981 632 ENI--AYGL--------P---DENVSKDDIIKAAKAANAHD-FIISLPQGYDTLVGERGGLLSGGQRQRIAIAR 691 (782)
Q Consensus 632 eNI--~~G~--------p---~~~~s~eei~~A~~~a~l~d-fI~~LP~GldT~VGE~G~~LSGGQrQRIaIAR 691 (782)
||+ .|+. . ......+.+.++++..++.+ ...+.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 898 4530 0 01123456888888888765 333222 348998889999998
No 145
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.19 E-value=1.7e-11 Score=120.82 Aligned_cols=111 Identities=20% Similarity=0.239 Sum_probs=75.1
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCC
Q 003981 560 NLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639 (782)
Q Consensus 560 sl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p 639 (782)
++.+++|+.++|+||+|+|||||++.+++.+.|.+|.. +.|+ +.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~--------- 75 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DT--------- 75 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EH---------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EH---------
Confidence 46678899999999999999999999999997766631 1111 11
Q ss_pred CCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHH
Q 003981 640 DENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATS-ALDAVSERLVQ 718 (782)
Q Consensus 640 ~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTS-ALD~~tE~~I~ 718 (782)
+++.+-++.+ + . ++ .. + -+...+.+|++|||||+++ .+|......+.
T Consensus 76 ------~~~~~~~~~~----~-~---~~--------~~-------~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~ 123 (180)
T 3ec2_A 76 ------KDLIFRLKHL----M-D---EG--------KD-------T---KFLKTVLNSPVLVLDDLGSERLSDWQRELIS 123 (180)
T ss_dssp ------HHHHHHHHHH----H-H---HT--------CC-------S---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHH
T ss_pred ------HHHHHHHHHH----h-c---Cc--------hH-------H---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 1111111100 0 0 00 00 0 1122245999999999996 89999988888
Q ss_pred HHHHHhc-CCcEEEEEecChh
Q 003981 719 DALNHLM-KGRTTLVIAHRLS 738 (782)
Q Consensus 719 ~~L~~l~-~~kTvIvIaHRLs 738 (782)
+.+++.. +++++|++||...
T Consensus 124 ~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 124 YIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHHHcCCCEEEEcCCCh
Confidence 8887765 6899999999864
No 146
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.16 E-value=2.3e-12 Score=134.48 Aligned_cols=111 Identities=19% Similarity=0.139 Sum_probs=88.6
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHH---cCCCCCccEEE--------ECCeeC-CCCChHhhhhceEEEcc
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA---RFYEPTGGRIT--------VGGEDL-RTFDKSEWARVVSIVNQ 621 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~---gly~p~~G~I~--------idG~di-~~i~~~~lR~~Ia~V~Q 621 (782)
.++++.+ ++|+.++|+||+||||||++++|+ |++.|++|.|. .+|.++ .......+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455543 789999999999999999999999 99999999999 999998 45678899999999995
Q ss_pred ------cCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCC
Q 003981 622 ------EPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERG 676 (782)
Q Consensus 622 ------~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G 676 (782)
..++++.++.+||. .+++.+++..+..++.|......+...++++|
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~---------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~ 146 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR---------TETVGNTASQAAAFPRVREALLRRQRAFREAP 146 (252)
T ss_dssp EETTEEEEEETTEECTTGGG---------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSS
T ss_pred cCCCCceEEECCeehhHHHH---------HHHHHHHHHHhcccHHHHHHHHHHHHHHhhCC
Confidence 46788889998875 25677777888888888777666666665544
No 147
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.15 E-value=8.3e-12 Score=139.18 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=93.5
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHH
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~ 635 (782)
-++|+|+++.|+.++|||++|||||||++.|++..+ .+.+.+...+ ..++++|.|+. -..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~-~~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSE-EERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSS-SCEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecC-cceEEEEeccc
Confidence 479999999999999999999999999999999843 3455444333 34577777764 11123333332
Q ss_pred cCC---CCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 003981 636 YGL---PDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAV 712 (782)
Q Consensus 636 ~G~---p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~ 712 (782)
+.. ........ ..+..+. ++..+.-+.-. + +.-.+||+||+||.++||||..+|.|++| +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~er--a~~lL~vvDls-~----~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIAR--TRVLLYVLDAA-D----EPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTS--SSEEEEEEETT-S----CHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHH--HHhhhEEeCCc-c----CCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 210 00011121 1121111 11111111000 1 12236999999999999999999999999 889986
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEec
Q 003981 713 SERLVQDALNHLM-KGRTTLVIAH 735 (782)
Q Consensus 713 tE~~I~~~L~~l~-~~kTvIvIaH 735 (782)
.+..+.+..+.+. .+.++|.|+.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 5533333222222 3667777763
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.14 E-value=1.2e-11 Score=123.99 Aligned_cols=156 Identities=16% Similarity=0.170 Sum_probs=96.1
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcc-cHHHHHHcCC
Q 003981 560 NLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSV-SVGENIAYGL 638 (782)
Q Consensus 560 sl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~g-TIreNI~~G~ 638 (782)
|+++++|+.++|+||||||||||+++|+|+++ .+.++|.++...+....+..++|++|++.+|.. +..+|+.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57788999999999999999999999999974 688999888777766668889999999988764 4444443210
Q ss_pred C---C-CCCCHHHHHHHHHHh----------cchhHHHhCCCC------------ccccccCCCCCCChhHHHHHHHHHH
Q 003981 639 P---D-ENVSKDDIIKAAKAA----------NAHDFIISLPQG------------YDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 639 p---~-~~~s~eei~~A~~~a----------~l~dfI~~LP~G------------ldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
. . ...+.+++.++++.. ++.......|+. +...+-+||..-....++|++-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0 0 011234454444331 111222233332 1223446666656677888888877
Q ss_pred hc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003981 693 LL---KNAPILILDEATSALDAVSERLVQDALNH 723 (782)
Q Consensus 693 Ll---r~p~ILILDEaTSALD~~tE~~I~~~L~~ 723 (782)
.. +.++.+|.++ .+| ++.+.+.+.|+.
T Consensus 157 ~~~~~~~~d~vi~n~---~~~-~~~~~l~~~i~~ 186 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND---NFD-QAVQNLIHIISA 186 (205)
T ss_dssp HHTTGGGCSEEEECS---SHH-HHHHHHHHHHHH
T ss_pred HHhcccCCCEEEECC---CHH-HHHHHHHHHHHH
Confidence 55 4577777655 222 344555555543
No 149
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.11 E-value=1.4e-12 Score=140.28 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=97.8
Q ss_pred cccEEEEeeEEEcCCCCCccceeeeeEEE-------------------eCCcEEEEECCCCCcHHHHHHHHHcCCC--CC
Q 003981 535 SGDICLEDVYFSYPLRPDVVILNGLNLTL-------------------KSGSVTALVGSSGAGKSTIVQLLARFYE--PT 593 (782)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I-------------------~~Ge~vaIVG~SGSGKSTLl~LL~gly~--p~ 593 (782)
.+.|+++||++.|. +++++|++.+ ++|+++||+|+||||||||+++|+|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 34689999999993 6899999988 9999999999999999999999999998 99
Q ss_pred ccEEEE---CCeeCCCCChHhhhhceEEEcccCCCC-cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCcc
Q 003981 594 GGRITV---GGEDLRTFDKSEWARVVSIVNQEPVLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYD 669 (782)
Q Consensus 594 ~G~I~i---dG~di~~i~~~~lR~~Ia~V~Q~~~LF-~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~Gld 669 (782)
+|+|.+ ||.+. + ...++.+++| |+..++ .-|+.+|+.+.. ++ ..-.+. ...| -|+
T Consensus 110 ~G~i~vi~~d~~~~---~-~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~--------~l------~~~~~~-i~~P-~~~ 168 (308)
T 1sq5_A 110 HRRVELITTDGFLH---P-NQVLKERGLM-KKKGFPESYDMHRLVKFVS--------DL------KSGVPN-VTAP-VYS 168 (308)
T ss_dssp CCCEEEEEGGGGBC---C-HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH--------HH------TTTCSC-EEEC-CEE
T ss_pred CCeEEEEecCCccC---c-HHHHHhCCEe-ecCCCCCCccHHHHHHHHH--------HH------hCCCCc-eecc-ccc
Confidence 999999 99874 2 2456778999 765543 347777776531 00 000000 0122 122
Q ss_pred ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 003981 670 TLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALD 710 (782)
Q Consensus 670 T~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD 710 (782)
... + +|+..+.+.+.+++|+|+|.+..-.|
T Consensus 169 ~~~---------~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 169 HLI---------Y--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp TTT---------T--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred ccc---------c--CcccccceecCCCCEEEECchhhCCC
Confidence 211 1 33433345667899999999988766
No 150
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.08 E-value=9.4e-11 Score=125.16 Aligned_cols=142 Identities=19% Similarity=0.128 Sum_probs=100.5
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceE
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 617 (782)
+.++++++.|+.. . ++++|+ +|+.++++|++|+||||++..|++.+.+..|+|.+.+.|+..-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 4567888888522 2 788888 99999999999999999999999999999999999888765311100
Q ss_pred EEcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 003981 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA 697 (782)
Q Consensus 618 ~V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p 697 (782)
++...++..++.- +|.| ..-.-.+-||.+|+++...++
T Consensus 144 -----------------------------ql~~~~~~~~l~~----~~~~---------~~~~p~~l~~~~l~~~~~~~~ 181 (295)
T 1ls1_A 144 -----------------------------QLRLLGEKVGVPV----LEVM---------DGESPESIRRRVEEKARLEAR 181 (295)
T ss_dssp -----------------------------HHHHHHHHHTCCE----EECC---------TTCCHHHHHHHHHHHHHHHTC
T ss_pred -----------------------------HHHHhcccCCeEE----EEcC---------CCCCHHHHHHHHHHHHHhCCC
Confidence 0001111112111 1111 112334567999999988999
Q ss_pred CEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Q 003981 698 PILILDEA-TSALDAVSERLVQDALNHLMKGRTTLVIA 734 (782)
Q Consensus 698 ~ILILDEa-TSALD~~tE~~I~~~L~~l~~~kTvIvIa 734 (782)
+++|+||| ++++|...-..+.+..+....+.+.+++.
T Consensus 182 D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 182 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred CEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 99999999 99999987777777777666666665553
No 151
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.07 E-value=2e-11 Score=121.19 Aligned_cols=128 Identities=20% Similarity=0.318 Sum_probs=70.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC-------------CCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHH
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYE-------------PTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~-------------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIre 632 (782)
|+.++|+||||||||||+++|+|+++ |..|++ +|.++...+.+.+++.+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 57899999999999999999999998 888986 89888888887777653 3777888888888
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHhc---c------hhHHHh--------------CCCCccccccCCCCCCChhHHHHHHH
Q 003981 633 NIAYGLPDENVSKDDIIKAAKAAN---A------HDFIIS--------------LPQGYDTLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 633 NI~~G~p~~~~s~eei~~A~~~a~---l------~dfI~~--------------LP~GldT~VGE~G~~LSGGQrQRIaI 689 (782)
|+ ||.+ .+++.++++... + ...+.. -++-+...+-+||..-....+||++-
T Consensus 76 ~~-yg~~-----~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~ 149 (186)
T 3a00_A 76 NY-YGST-----VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSA 149 (186)
T ss_dssp EE-EEEE-----HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC------------------------
T ss_pred ee-ccCc-----HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 87 7733 344544443310 1 011122 12567777888898888888999999
Q ss_pred HHHhc-----cCCCEEEEeC
Q 003981 690 ARALL-----KNAPILILDE 704 (782)
Q Consensus 690 ARALl-----r~p~ILILDE 704 (782)
|++-+ +.++.+|..+
T Consensus 150 ~~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 150 AQAELAYAETGAHDKVIVND 169 (186)
T ss_dssp ---------CCCCSEEEECS
T ss_pred HHHHHHhhcccCCcEEEECc
Confidence 99866 5677777765
No 152
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.06 E-value=2.5e-11 Score=130.09 Aligned_cols=105 Identities=12% Similarity=0.116 Sum_probs=70.9
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEE---CCeeCCCCChHhhhhceEEEcccCC-------------
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV---GGEDLRTFDKSEWARVVSIVNQEPV------------- 624 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~i---dG~di~~i~~~~lR~~Ia~V~Q~~~------------- 624 (782)
|++.+|++++|+||||||||||+++|+|+..|++|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 566789999999999999999999999999999999999 9998876552222246999999985
Q ss_pred ---CC-cccHHHHHHcCCCC-CCCCHHHHHHHHHHhcch-hHHHhCCC
Q 003981 625 ---LF-SVSVGENIAYGLPD-ENVSKDDIIKAAKAANAH-DFIISLPQ 666 (782)
Q Consensus 625 ---LF-~gTIreNI~~G~p~-~~~s~eei~~A~~~a~l~-dfI~~LP~ 666 (782)
+| +-|+ ||+.|+.-. .....+.+.++++..++. +...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 34 3477 999885211 112346789999999994 66555553
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.03 E-value=3e-10 Score=121.66 Aligned_cols=98 Identities=23% Similarity=0.345 Sum_probs=73.6
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCC
Q 003981 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638 (782)
Q Consensus 559 Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~ 638 (782)
+++..++|+.++|+|++||||||++..|++.+.+..|+|.+.+.|.... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHH-------
Confidence 4556788999999999999999999999999999989999888764320 011
Q ss_pred CCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH---HHHHHhccCCCEEEEeCCCC
Q 003981 639 PDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI---AIARALLKNAPILILDEATS 707 (782)
Q Consensus 639 p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI---aIARALlr~p~ILILDEaTS 707 (782)
+++...++..++. . + ...|||+.|++ +|+||+.++++++|+|||..
T Consensus 149 -------eqL~~~~~~~gl~-----------~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -------EQLKIWGERVGAT-----------V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -------HHHHHHHHHHTCE-----------E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -------HHHHHHHHHcCCc-----------E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 2232233333221 1 1 13579999999 99999999999999999985
No 154
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.02 E-value=1.1e-10 Score=131.95 Aligned_cols=65 Identities=17% Similarity=0.102 Sum_probs=56.2
Q ss_pred EEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh
Q 003981 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK 609 (782)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~ 609 (782)
.+.++++.. ..+|+|+||+|++ +++||+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 455665432 2469999999999 9999999999999999999999999999999999999876553
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.02 E-value=3.4e-10 Score=120.83 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=94.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV 643 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~ 643 (782)
++|+.+++||++||||||++..|++.+.+++| ++|.++.+|++ ..+..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 47999999999999999999999999998778 24778888873 3344444432
Q ss_pred CHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003981 644 SKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNH 723 (782)
Q Consensus 644 s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~ 723 (782)
.++..++ | -... ..++..+.+|+++ ++++++|+| |+++|...+..+.+..+-
T Consensus 156 -------~~~~~gl-------~----~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 156 -------YAELLQA-------P----LEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp -------HHTTTTC-------C----CCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred -------HHHhcCC-------C----eEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 2211121 1 1111 1235567888875 999999999 999998766666554332
Q ss_pred hc---CCcEEEEE--ecChhHHHh-cCeEEEEeCCEEEEe
Q 003981 724 LM---KGRTTLVI--AHRLSTVQN-AHQIALCSDGRIAEL 757 (782)
Q Consensus 724 l~---~~kTvIvI--aHRLsti~~-aD~IiVLd~G~Ive~ 757 (782)
+. .+.+++++ +|....+.+ +|++-.++.|.|+-.
T Consensus 208 l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 22 33456666 899877765 777766777777753
No 156
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.94 E-value=1.5e-12 Score=137.79 Aligned_cols=139 Identities=18% Similarity=0.174 Sum_probs=100.2
Q ss_pred EEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEE
Q 003981 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (782)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 618 (782)
+++++...|. +..+++++++++++| ++|+||+|||||||+++|++... .|.|.++|.++.+......++.+.+
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 3456666664 346899999999999 99999999999999999999886 8999999988766555666777888
Q ss_pred EcccCC-CC-cccHHHHH-HcCCCCCC---CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 619 VNQEPV-LF-SVSVGENI-AYGLPDEN---VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 619 V~Q~~~-LF-~gTIreNI-~~G~p~~~---~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
++|++. .+ .-++.||| .++..... ...++..+.+ ..++ ..|||||+||..||+|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEE
Confidence 999864 33 34778888 45421100 0112222221 1122 1378999999999999
Q ss_pred hccCCCEEEEeCCC
Q 003981 693 LLKNAPILILDEAT 706 (782)
Q Consensus 693 Llr~p~ILILDEaT 706 (782)
+..+|++ ||++.
T Consensus 184 ~t~~p~~--ld~~l 195 (278)
T 1iy2_A 184 ATNRPDI--LDPAL 195 (278)
T ss_dssp EESCTTS--SCHHH
T ss_pred ecCCchh--CCHhH
Confidence 9999987 77764
No 157
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.93 E-value=1.4e-10 Score=116.00 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=68.8
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-------------CCccEEEECCeeCCCCChHhhhhceEEEcccCCCCc
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYE-------------PTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS 627 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~-------------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~ 627 (782)
+...+|+.++|+||||||||||+++|++.++ |..|+ +||++..-++.+.+++.+ .|+.+|+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 4445899999999999999999999999986 78898 799999999999999976 79999999
Q ss_pred ccHHHHHHcCCCCCCCCHHHHHHHH
Q 003981 628 VSVGENIAYGLPDENVSKDDIIKAA 652 (782)
Q Consensus 628 gTIreNI~~G~p~~~~s~eei~~A~ 652 (782)
+++.+| .||.| .+.+.+++
T Consensus 89 ~~~~~n-~YGt~-----~~~v~~~l 107 (197)
T 3ney_A 89 GSYQGN-MFGTK-----FETVHQIH 107 (197)
T ss_dssp EEETTE-EEEEE-----HHHHHHHH
T ss_pred hhhhce-ecccc-----hhhHHHHH
Confidence 999999 49943 45565555
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.89 E-value=3.2e-12 Score=133.14 Aligned_cols=140 Identities=18% Similarity=0.183 Sum_probs=100.9
Q ss_pred EEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEE
Q 003981 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (782)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 618 (782)
+++++.+.|. +..+++++++++++| ++|+||+|||||||++.|++... .|.|.++|.++.+......++.+.+
T Consensus 27 ~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 27 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 4567777674 346899999999999 99999999999999999999886 7999999988766555566777888
Q ss_pred EcccCC-CC-cccHHHHH-HcCCCCCC---CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 003981 619 VNQEPV-LF-SVSVGENI-AYGLPDEN---VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARA 692 (782)
Q Consensus 619 V~Q~~~-LF-~gTIreNI-~~G~p~~~---~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARA 692 (782)
++|+.. .+ .-++.||| .++..... ...++..+.+ ..++. .|||||+||..||+|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll~---------------~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHHH---------------HHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHHH---------------HHhCCCCCCCEEEEE
Confidence 999864 33 35777888 45421100 0112222221 11111 367999999999999
Q ss_pred hccCCCEEEEeCCCC
Q 003981 693 LLKNAPILILDEATS 707 (782)
Q Consensus 693 Llr~p~ILILDEaTS 707 (782)
+..+|++ ||++.-
T Consensus 160 ~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 160 ATNRPDI--LDPALL 172 (254)
T ss_dssp EESCGGG--SCGGGG
T ss_pred ccCCchh--CCHHHc
Confidence 9999987 788874
No 159
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.89 E-value=1.7e-12 Score=141.25 Aligned_cols=94 Identities=20% Similarity=0.193 Sum_probs=72.7
Q ss_pred EEEEeeEEEcCCCCCccceeeeeEEEeCC-------cEEEEECCCCCcHHHHHHHHHcCC----CCCccEEEECCeeCCC
Q 003981 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSG-------SVTALVGSSGAGKSTIVQLLARFY----EPTGGRITVGGEDLRT 606 (782)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~Isl~I~~G-------e~vaIVG~SGSGKSTLl~LL~gly----~p~~G~I~idG~di~~ 606 (782)
++.++++..|. ...+++++++.+++| +.++|+||+|+|||||+++|++.+ .+++|.+..+|.++..
T Consensus 19 lr~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 44556666674 346899999999887 889999999999999999999998 6778888777766543
Q ss_pred CChHhhhhceEEEcccCCCCcccHHHHHH
Q 003981 607 FDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (782)
Q Consensus 607 i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~ 635 (782)
+.....+..|.++.|...++. ++.|++.
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 211112457999999888776 8888885
No 160
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.88 E-value=1.1e-11 Score=136.89 Aligned_cols=168 Identities=15% Similarity=0.133 Sum_probs=108.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHc------------CCCCCccEEEECCeeCCCCCh-Hhhhhc---eEEEcccCCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLAR------------FYEPTGGRITVGGEDLRTFDK-SEWARV---VSIVNQEPVL 625 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~g------------ly~p~~G~I~idG~di~~i~~-~~lR~~---Ia~V~Q~~~L 625 (782)
++++|.+++|||++|+|||||+|.|.| ..+|+.|.|.++|..+..+.. ..-++. ..++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 678999999998853211000 000111 2356676666
Q ss_pred Ccc-cHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC--CEEEE
Q 003981 626 FSV-SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNA--PILIL 702 (782)
Q Consensus 626 F~g-TIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p--~ILIL 702 (782)
..+ |..|++ . .+....++.+..--++...-+ + ..-..+||+. || +|+++
T Consensus 96 ~~~~s~~e~L---------~-~~fl~~ir~~d~il~Vvd~~~--d----~~i~~v~~~~------------dP~~di~il 147 (392)
T 1ni3_A 96 TKGASTGVGL---------G-NAFLSHVRAVDAIYQVVRAFD--D----AEIIHVEGDV------------DPIRDLSII 147 (392)
T ss_dssp CCCCCSSSSS---------C-HHHHHHHTTCSEEEEEEECCC--T----TCSSCCSSSS------------CHHHHHHHH
T ss_pred ccCCcHHHHH---------H-HHHHHHHHHHHHHHHHHhccc--c----ceeeeecccc------------Ccchhhhhc
Confidence 542 222222 1 122333322221111111111 1 2223356652 89 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEecChhHHHh-cCeEE-EEeCC-EEEEecC
Q 003981 703 DEATSALDAVSERLVQDALNHL-MK-GRTTLVIAHRLSTVQN-AHQIA-LCSDG-RIAELGT 759 (782)
Q Consensus 703 DEaTSALD~~tE~~I~~~L~~l-~~-~kTvIvIaHRLsti~~-aD~Ii-VLd~G-~Ive~Gt 759 (782)
||+++.+|.+.-+...+.++.. .+ ++|+ ++|.+..+.. ||+|. +|++| +++..|+
T Consensus 148 deel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~ 207 (392)
T 1ni3_A 148 VDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGD 207 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCC
Confidence 9999999999988888888876 54 4453 4999987755 99999 99999 8886665
No 161
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.87 E-value=1e-10 Score=133.01 Aligned_cols=158 Identities=16% Similarity=0.219 Sum_probs=98.7
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHHc--CCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCc---cc---
Q 003981 558 GLNLTLKSGSVTALVGSSGAGKSTIVQLLAR--FYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS---VS--- 629 (782)
Q Consensus 558 ~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~g--ly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~---gT--- 629 (782)
.+++++.++..+.|+|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. =|+++. ..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 3788889999999999999999999999876 67777799998888877655544432 123221 00
Q ss_pred HHHHHHcCCCCCCCCHHHH---HHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH----------HHHHHhccC
Q 003981 630 VGENIAYGLPDENVSKDDI---IKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI----------AIARALLKN 696 (782)
Q Consensus 630 IreNI~~G~p~~~~s~eei---~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI----------aIARALlr~ 696 (782)
+.+++..- .+|+ .+.++.+++.++- +|+..+. ..+||||+||. ++||++-..
T Consensus 232 a~~~L~~~-------~~EmerR~~ll~~~Gv~~i~-----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~l 296 (512)
T 2ius_A 232 AANALRWC-------VNEMERRYKLMSALGVRNLA-----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKE 296 (512)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHTTCSSHH-----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCC
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHcCCccHH-----HHHHHHH---HHhhcCCcccccccccccchhccccccccC
Confidence 11122110 1111 1233333333321 2332221 23688888763 467888888
Q ss_pred CC-EEEEeCCCCCCCHHHHHHHHHHHHHh---c--CCcEEEEEecChh
Q 003981 697 AP-ILILDEATSALDAVSERLVQDALNHL---M--KGRTTLVIAHRLS 738 (782)
Q Consensus 697 p~-ILILDEaTSALD~~tE~~I~~~L~~l---~--~~kTvIvIaHRLs 738 (782)
|. ++++||+++.+|.. .+.+.+.|.++ . .|.++|++|||++
T Consensus 297 P~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp CEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred CcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 98 78899999999843 23444444433 2 2779999999998
No 162
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.84 E-value=4.8e-10 Score=119.95 Aligned_cols=98 Identities=17% Similarity=0.259 Sum_probs=58.2
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEE---CCeeCCCCChHhhhhceEEEcccCCCCc-----ccHHH
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV---GGEDLRTFDKSEWARVVSIVNQEPVLFS-----VSVGE 632 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~i---dG~di~~i~~~~lR~~Ia~V~Q~~~LF~-----gTIre 632 (782)
+++.+|++++|+|+||+|||||+|.|+|+..|..|+|.+ +|+++.... ..++..++||+|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 557799999999999999999999999999999999999 888876543 222223899999997764 578 9
Q ss_pred HHHcCCC---------------CCCCCHHHHHHHHHHhcchhH
Q 003981 633 NIAYGLP---------------DENVSKDDIIKAAKAANAHDF 660 (782)
Q Consensus 633 NI~~G~p---------------~~~~s~eei~~A~~~a~l~df 660 (782)
||....| ..+.....+.+|++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 9942111 011234567788888777653
No 163
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.83 E-value=2.8e-10 Score=112.24 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=63.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC-CccEEE----------ECCeeCCCCChHhhhhceEEEcccCCCCcccHHHH
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRIT----------VGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGEN 633 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p-~~G~I~----------idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreN 633 (782)
+|+.++|+||||||||||+++|++++++ ..|.|. +||.++..++.+.+++. +.|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6899999999999999999999999873 445543 47777777888888874 679999999999999
Q ss_pred HHcCCCCCCCCHHHHHHHHH
Q 003981 634 IAYGLPDENVSKDDIIKAAK 653 (782)
Q Consensus 634 I~~G~p~~~~s~eei~~A~~ 653 (782)
.||.+ .+++.++++
T Consensus 81 -~yg~~-----~~~i~~~l~ 94 (180)
T 1kgd_A 81 -MYGTK-----LETIRKIHE 94 (180)
T ss_dssp -EEEEE-----HHHHHHHHH
T ss_pred -ccccc-----HHHHHHHHH
Confidence 67733 556666653
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.80 E-value=5.4e-10 Score=110.99 Aligned_cols=141 Identities=20% Similarity=0.202 Sum_probs=76.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC-----------CccEEEECCeeCCC--CChHhhhhceEEEcccCCCCcc--cHHH
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEP-----------TGGRITVGGEDLRT--FDKSEWARVVSIVNQEPVLFSV--SVGE 632 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p-----------~~G~I~idG~di~~--i~~~~lR~~Ia~V~Q~~~LF~g--TIre 632 (782)
+++|+|++|||||||++.+.|...+ .+|+|.++|.++.- ++....++..++++|...-.++ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7999999999999999999998765 58999999976531 1211122223333332110000 1111
Q ss_pred HHHcCCCCCCCCHHHHHHHHHHhcchhHHHh-CCCCcc-ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 003981 633 NIAYGLPDENVSKDDIIKAAKAANAHDFIIS-LPQGYD-TLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALD 710 (782)
Q Consensus 633 NI~~G~p~~~~s~eei~~A~~~a~l~dfI~~-LP~Gld-T~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD 710 (782)
+... .+.+++....+. +.. -+...- -.++.. ..|..-..+...+||++.++|+++++| |||+|
T Consensus 111 ~~~~------~s~~~~~~~~~~------~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald 175 (191)
T 1oix_A 111 IAKH------LTYENVERWLKE------LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALD 175 (191)
T ss_dssp TTCH------HHHHTHHHHHHH------HHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTT
T ss_pred CcCH------HHHHHHHHHHHH------HHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCC
Confidence 1100 001111111110 000 000000 011111 112221223478999999999999999 99999
Q ss_pred HHHHHHHHHHHHH
Q 003981 711 AVSERLVQDALNH 723 (782)
Q Consensus 711 ~~tE~~I~~~L~~ 723 (782)
..+...+.+.|.+
T Consensus 176 ~~~v~~l~~~l~~ 188 (191)
T 1oix_A 176 STNVEAAFQTILT 188 (191)
T ss_dssp CTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9888888877754
No 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.78 E-value=2e-10 Score=117.74 Aligned_cols=75 Identities=19% Similarity=0.157 Sum_probs=52.8
Q ss_pred cEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCC--------
Q 003981 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD-------- 608 (782)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~-------- 608 (782)
.|+++|++..|. . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+
T Consensus 9 ~l~l~~~~~~~~---~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA---R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE---E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC---C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488999876552 1 455666 899999999999999999999999999999999999884433
Q ss_pred hHhhhhceEEEccc
Q 003981 609 KSEWARVVSIVNQE 622 (782)
Q Consensus 609 ~~~lR~~Ia~V~Q~ 622 (782)
...++.+++||+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 22356789999984
No 166
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.77 E-value=1.7e-08 Score=110.12 Aligned_cols=143 Identities=22% Similarity=0.347 Sum_probs=85.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccE-EEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR-ITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~-I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~ 640 (782)
-+++|+.+.|.|++|||||||+..++.......|. ++++... ..+. .+.+.+++.+|+ +.+..|
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~~~- 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVSQP- 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEECC-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEecC-
Confidence 47899999999999999999988777655443333 3344321 1111 111222221111 111111
Q ss_pred CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC--CCEEEEeCCCCCC---------
Q 003981 641 ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKN--APILILDEATSAL--------- 709 (782)
Q Consensus 641 ~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~--p~ILILDEaTSAL--------- 709 (782)
.++ .|-+.++|++.++ |+++|+||+++-+
T Consensus 122 --------------------------------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~ 161 (349)
T 2zr9_A 122 --------------------------------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 161 (349)
T ss_dssp --------------------------------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC-
T ss_pred --------------------------------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccc
Confidence 011 2345588888765 9999999999998
Q ss_pred -CH---HHHHHHHHHHHHh-----cCCcEEEEEecChh----------------HH-HhcCeEEEEeCCEEEEecC
Q 003981 710 -DA---VSERLVQDALNHL-----MKGRTTLVIAHRLS----------------TV-QNAHQIALCSDGRIAELGT 759 (782)
Q Consensus 710 -D~---~tE~~I~~~L~~l-----~~~kTvIvIaHRLs----------------ti-~~aD~IiVLd~G~Ive~Gt 759 (782)
|+ ..++.+.+.++++ ..++|+|+++|-.. .+ ..||.++.+.++++...|+
T Consensus 162 gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 162 GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 32 1222444444443 14899999999543 24 3599999998887765554
No 167
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.77 E-value=2.2e-09 Score=110.28 Aligned_cols=166 Identities=16% Similarity=0.100 Sum_probs=89.0
Q ss_pred ceeee-eEEEeCCcEEEEECCCCCcHHHHHH-HHHcCCCCCccEEEECCeeCCCCChHhhhh---ceEEEcccCCCCccc
Q 003981 555 ILNGL-NLTLKSGSVTALVGSSGAGKSTIVQ-LLARFYEPTGGRITVGGEDLRTFDKSEWAR---VVSIVNQEPVLFSVS 629 (782)
Q Consensus 555 vL~~I-sl~I~~Ge~vaIVG~SGSGKSTLl~-LL~gly~p~~G~I~idG~di~~i~~~~lR~---~Ia~V~Q~~~LF~gT 629 (782)
.|+++ .--+++|+.++|+|++|||||||+. ++....+...+.+++++.. +...+++ .+++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 35555 5568999999999999999999955 5555555445566665542 2333322 33444433210
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc--cCCCEEEEeCCCC
Q 003981 630 VGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL--KNAPILILDEATS 707 (782)
Q Consensus 630 IreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl--r~p~ILILDEaTS 707 (782)
.+|+.+.... .+ .+..+++ .+..+-+. +....+.+..++.++ .+|+++++|++|+
T Consensus 83 -~~~l~~~~~~----~~-------------~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~ 139 (247)
T 2dr3_A 83 -KGMFAMVDAF----TA-------------GIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTT 139 (247)
T ss_dssp -HTSEEEEECS----TT-------------TTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGG
T ss_pred -CCcEEEEecc----hh-------------hcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchH
Confidence 0112111000 00 0000000 00000011 122334444455554 4799999999998
Q ss_pred CC--CHHHHHHHHHHHHHhc--CCcEEEEEecChhH---------HHhcCeEEEEeC
Q 003981 708 AL--DAVSERLVQDALNHLM--KGRTTLVIAHRLST---------VQNAHQIALCSD 751 (782)
Q Consensus 708 AL--D~~tE~~I~~~L~~l~--~~kTvIvIaHRLst---------i~~aD~IiVLd~ 751 (782)
-+ |....+.+...+.+.. .++|+|+++|.... ...||.|+.|+.
T Consensus 140 l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 140 LYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 87 5422233333443332 58899999998764 356999999964
No 168
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.77 E-value=5.6e-10 Score=130.91 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=103.8
Q ss_pred CccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCc-cEEEECCeeCCCCChHhhhhceEEEcccC-------
Q 003981 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG-GRITVGGEDLRTFDKSEWARVVSIVNQEP------- 623 (782)
Q Consensus 552 ~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~-G~I~idG~di~~i~~~~lR~~Ia~V~Q~~------- 623 (782)
...+++++++.+++|+.+.|+||+|+|||||++.|+++.++.. |.+.+++.+....+ ..++++||..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g~~~~~~e~ 120 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPACQGRRIVEK 120 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETTHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecchHHHHHHH
Confidence 3468999999999999999999999999999999999999988 88999888765543 4588887754
Q ss_pred ---------------CCC-cccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHH
Q 003981 624 ---------------VLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRI 687 (782)
Q Consensus 624 ---------------~LF-~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRI 687 (782)
+.| ..++.+|+..++-. .....+... ......+++..+ +.. ......+|+|++|++
T Consensus 121 ~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~--~~~~~~v~~-~~~~~~~L~G~~----~~~-~~~~g~~~~g~~~~i 192 (604)
T 3k1j_A 121 YREKAKSQESVKSSNMRLKSTVLVPKLLVDNCG--RTKAPFIDA-TGAHAGALLGDV----RHD-PFQSGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHHTCC-----------CCCEEEECCTT--CSSCCEEEC-TTCCHHHHHCEE----CCC-CC----CCCCGGGGE
T ss_pred HHHhhccchhhhhhcccccccccccceeecccc--CCCCCEEEc-CCCCHHhcCceE----Eec-hhhcCCccccccccc
Confidence 222 22344444332100 000000000 000011111111 000 122235999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 003981 688 AIARALLKNAPILILDEATSALDAVSERLVQDALNH 723 (782)
Q Consensus 688 aIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~ 723 (782)
..++....++.+|+|||... |++.....+.+.|++
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999998 798888888888874
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.74 E-value=1e-08 Score=115.98 Aligned_cols=177 Identities=11% Similarity=0.118 Sum_probs=111.7
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCcc-EEEECCeeCCCCChHhhhhce-EEEcccCCCCcccHH
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG-RITVGGEDLRTFDKSEWARVV-SIVNQEPVLFSVSVG 631 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G-~I~idG~di~~i~~~~lR~~I-a~V~Q~~~LF~gTIr 631 (782)
+.|+++..-+++|+.+.|.|++|+|||||+.-+++...+..| .|.+-+. +.+...+++++ +....- . -
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~------~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNI------N-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTC------C-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCC------C-H
Confidence 468888878999999999999999999999999988776555 5655443 34555555442 111100 0 1
Q ss_pred HHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc--cCCCEEEEeCCCCCC
Q 003981 632 ENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALL--KNAPILILDEATSAL 709 (782)
Q Consensus 632 eNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALl--r~p~ILILDEaTSAL 709 (782)
+++.-| ..++++..++.+.+ +.+...| -.+-+ -..+|++|.+ +.||++. .+|+++|+|+++.-.
T Consensus 261 ~~l~~g----~l~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 261 QNLRTG----KLTPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp HHHHTS----CCCHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred HHHhcC----CCCHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 233334 24555544333222 1222222 11212 2478999876 6778776 579999999999877
Q ss_pred CHH--------HHHHHHHHHHHhc--CCcEEEEEec-----------Chh---------HHHhcCeEEEEeCCEE
Q 003981 710 DAV--------SERLVQDALNHLM--KGRTTLVIAH-----------RLS---------TVQNAHQIALCSDGRI 754 (782)
Q Consensus 710 D~~--------tE~~I~~~L~~l~--~~kTvIvIaH-----------RLs---------ti~~aD~IiVLd~G~I 754 (782)
+.. .-..+.+.|+++. .++++|+++| |+. .-..||.|++|.+++.
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 431 1144555565543 3889999999 132 3356999999987765
No 170
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.74 E-value=3.3e-09 Score=125.44 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=66.7
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHH
Q 003981 560 NLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP--TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (782)
Q Consensus 560 sl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p--~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~ 635 (782)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++++|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE
Confidence 457889999999999999999999999987765 78999 7999999999999999999999999999999988885
No 171
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.72 E-value=1.6e-09 Score=109.02 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=44.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYG 637 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G 637 (782)
++++|+.++|+|++||||||++++|.+.++ .+.+++||+++|++ +|+.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 578899999999999999999999999985 38999999999987 677665
No 172
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.65 E-value=5.2e-09 Score=105.66 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=61.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC-CccEEE----------ECCeeCCCCChHhhhhceEEEcccCCCCcccHHH
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRIT----------VGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-~~G~I~----------idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIre 632 (782)
++|+.++|+||||||||||++.|++.+++ ..+.+. .+|.+...++...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999986 333333 356677777788887765 6888999999888
Q ss_pred HHHcCCCCCCCCHHHHHHHH
Q 003981 633 NIAYGLPDENVSKDDIIKAA 652 (782)
Q Consensus 633 NI~~G~p~~~~s~eei~~A~ 652 (782)
| .||.+ .+.+.+++
T Consensus 83 ~-~yg~~-----~~~i~~~l 96 (208)
T 3tau_A 83 N-YYGTP-----LEYVEEKL 96 (208)
T ss_dssp E-EEEEE-----HHHHHHHH
T ss_pred c-cCCCc-----HHHHHHHH
Confidence 8 57733 45555444
No 173
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.64 E-value=2.2e-10 Score=126.05 Aligned_cols=137 Identities=13% Similarity=0.142 Sum_probs=89.8
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHH
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIre 632 (782)
..+|+++++.+++|+.++|+||+|||||||+++|++.+ +|++..-+ .+.+.++..+++++|...+ +.|
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~-----~~~~~~~~~lg~~~q~~~~----l~d 223 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN-----LPLDRLNFELGVAIDQFLV----VFE 223 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS-----SCTTTHHHHHGGGTTCSCE----EET
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe-----ccchhHHHHHHHhcchhHH----HHH
Confidence 36899999999999999999999999999999999964 67776511 1122334458889998765 345
Q ss_pred HHHcCCC-CCCCC-HHHHHHHHHHhcchhHHHh-----------------CCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 633 NIAYGLP-DENVS-KDDIIKAAKAANAHDFIIS-----------------LPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 633 NI~~G~p-~~~~s-~eei~~A~~~a~l~dfI~~-----------------LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
++....+ ..... .+.+. ....+.+.+.. ++.| .+..+-..+++|.+||++.+.++
T Consensus 224 d~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l 297 (377)
T 1svm_A 224 DVKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDF 297 (377)
T ss_dssp TCCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEEC
T ss_pred HHHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhcc
Confidence 5554321 00000 00110 11122222210 1112 22344556899999999999999
Q ss_pred ccCCCEEE-EeCCCC
Q 003981 694 LKNAPILI-LDEATS 707 (782)
Q Consensus 694 lr~p~ILI-LDEaTS 707 (782)
+.+|++++ ||+|+.
T Consensus 298 ~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 298 RPKDYLKHCLERSEF 312 (377)
T ss_dssp CCCHHHHHHHHTCTH
T ss_pred CCCCCeEEEEeCCHH
Confidence 99999998 999987
No 174
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.56 E-value=8e-09 Score=103.29 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=52.6
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccC-----------CCCccc
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEP-----------VLFSVS 629 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~-----------~LF~gT 629 (782)
++|++|+.++|+|+|||||||++++|.+++.|+.| +.+ +...++... ..+..++|++|++ .+++.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMRE-GEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCCC-CccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46889999999999999999999999999977665 222 222222111 1122366666654 556666
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHH
Q 003981 630 VGENIAYGLPDENVSKDDIIKAAK 653 (782)
Q Consensus 630 IreNI~~G~p~~~~s~eei~~A~~ 653 (782)
+++| .||. ..+++.++++
T Consensus 78 ~~~~-~~g~-----~~~~i~~~l~ 95 (207)
T 2j41_A 78 YVGN-YYGT-----PVQYVKDTMD 95 (207)
T ss_dssp ETTE-EEEE-----EHHHHHHHHH
T ss_pred ECCe-ecCC-----CHHHHHHHHH
Confidence 7777 3652 2456666553
No 175
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.54 E-value=2e-08 Score=99.96 Aligned_cols=136 Identities=21% Similarity=0.295 Sum_probs=71.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC-----CCC------ccEEEECCeeCC----CCC-hHhhhhceEEEcccCC--C--Cc
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY-----EPT------GGRITVGGEDLR----TFD-KSEWARVVSIVNQEPV--L--FS 627 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly-----~p~------~G~I~idG~di~----~i~-~~~lR~~Ia~V~Q~~~--L--F~ 627 (782)
+++|+|++|||||||++.|+|.. .|+ .|+|.++|.++. +.+ .+.+++......|+.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 243 678999997652 222 2233332222223321 1 21
Q ss_pred ccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHh-CCCCcc-ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCC
Q 003981 628 VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIIS-LPQGYD-TLVGERGGLLSGGQRQRIAIARALLKNAPILILDEA 705 (782)
Q Consensus 628 gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~-LP~Gld-T~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEa 705 (782)
.+-.. +.+++....+. +.. .+.+.- -.|+.. ..|..-.......||++.++|+++++|
T Consensus 87 ~~~~~-----------s~~~~~~~~~~------~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d-- 146 (199)
T 2f9l_A 87 IAKHL-----------TYENVERWLKE------LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE-- 146 (199)
T ss_dssp TTCHH-----------HHHTHHHHHHH------HHHHSCTTCEEEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--
T ss_pred CcCHH-----------HHHHHHHHHHH------HHHhcCCCCeEEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--
Confidence 11110 11111111100 000 001100 111111 111111112346699999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 003981 706 TSALDAVSERLVQDALNH 723 (782)
Q Consensus 706 TSALD~~tE~~I~~~L~~ 723 (782)
|||+|..+-..+.+.|.+
T Consensus 147 ~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 147 TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp CCTTTCTTHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHH
Confidence 999999777777666644
No 176
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.48 E-value=5.8e-09 Score=120.19 Aligned_cols=91 Identities=29% Similarity=0.365 Sum_probs=64.5
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCcc-EEE-ECCeeCCC-------CCh---HhhhhceEEEcccCCCCcc
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG-RIT-VGGEDLRT-------FDK---SEWARVVSIVNQEPVLFSV 628 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G-~I~-idG~di~~-------i~~---~~lR~~Ia~V~Q~~~LF~g 628 (782)
..+++|+.++|+|+||||||||+++|++.+.|++| +|. +||.++.+ ++. ..+++.+++|.|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 35789999999999999999999999999999987 784 99987643 222 23556789999973
Q ss_pred cHHHHHHcCCCCC--CCCHHHHHHHHHHhc
Q 003981 629 SVGENIAYGLPDE--NVSKDDIIKAAKAAN 656 (782)
Q Consensus 629 TIreNI~~G~p~~--~~s~eei~~A~~~a~ 656 (782)
+..+|+.+..... ....+++.++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 4566776542110 122345666666554
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.47 E-value=6.1e-08 Score=106.25 Aligned_cols=58 Identities=22% Similarity=0.231 Sum_probs=41.1
Q ss_pred eeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHc--CCCCCccEEEECCe
Q 003981 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLAR--FYEPTGGRITVGGE 602 (782)
Q Consensus 542 nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~g--ly~p~~G~I~idG~ 602 (782)
|+...|.......+|++++++++ .|+|||++|||||||++.|.| +.++.+|.++-...
T Consensus 13 ~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 13 RACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp TTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred HHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 34444542223458999999998 999999999999999999999 77888887765444
No 178
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.45 E-value=2.1e-07 Score=105.36 Aligned_cols=114 Identities=23% Similarity=0.309 Sum_probs=76.4
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHH
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGEN 633 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreN 633 (782)
..++++++++++| +.|+||+|+|||||++.+++.... + +-++ +.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------~------------f~~i---------s~--- 82 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------P------------FFHI---------SG--- 82 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------C------------EEEE---------EG---
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------C------------eeeC---------CH---
Confidence 4677888888888 889999999999999999984310 0 1111 00
Q ss_pred HHcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC------
Q 003981 634 IAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATS------ 707 (782)
Q Consensus 634 I~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTS------ 707 (782)
.+++.. .+| .|++++|-.+++|....|.||++||+.+
T Consensus 83 ------------------------~~~~~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~ 125 (476)
T 2ce7_A 83 ------------------------SDFVEL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG 125 (476)
T ss_dssp ------------------------GGTTTC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--
T ss_pred ------------------------HHHHHH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcc
Confidence 011100 011 2788999999999999999999999943
Q ss_pred ----CCCHHHHHHHHHHHHHh-----cCCcEEEEEecChhHH
Q 003981 708 ----ALDAVSERLVQDALNHL-----MKGRTTLVIAHRLSTV 740 (782)
Q Consensus 708 ----ALD~~tE~~I~~~L~~l-----~~~kTvIvIaHRLsti 740 (782)
+.|.+.++.+.+.+..+ ..+..+|..||++..+
T Consensus 126 ~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 126 AGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 56666666666655443 1355778889998654
No 179
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.44 E-value=1.7e-08 Score=104.98 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=36.5
Q ss_pred cEEEEee-EEEcCCCCCccceeeeeEEEeC---CcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 537 DICLEDV-YFSYPLRPDVVILNGLNLTLKS---GSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 537 ~I~f~nV-sF~Y~~~~~~~vL~~Isl~I~~---Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
.++++|| +|+|. .+.++|+|+||+|++ |+.++|+|++||||||++++|++.+.
T Consensus 17 ~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999 99993 245799999999999 99999999999999999999998653
No 180
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.44 E-value=5.9e-09 Score=104.39 Aligned_cols=52 Identities=29% Similarity=0.461 Sum_probs=46.1
Q ss_pred ccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEE--EECCeeCC
Q 003981 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI--TVGGEDLR 605 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I--~idG~di~ 605 (782)
..+.+..++..++|+.++|+|+|||||||++++|++.+. ..|.+ .+||.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 456788888899999999999999999999999999997 78988 99987654
No 181
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.42 E-value=2.3e-08 Score=98.11 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=62.6
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCe--eCCCCC----hHhhhhceEEEcccCC------
Q 003981 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE--DLRTFD----KSEWARVVSIVNQEPV------ 624 (782)
Q Consensus 557 ~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~--di~~i~----~~~lR~~Ia~V~Q~~~------ 624 (782)
+++++++.+| .++|+|++|||||||+++|.++..+..|...-.+. ++-... ....+..|.++.|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 5788999999 99999999999999999999988777765433221 111111 0023557999999863
Q ss_pred ----CCcccHHHH----HHcCCCCCCCCHHHHHHHHHHhcch
Q 003981 625 ----LFSVSVGEN----IAYGLPDENVSKDDIIKAAKAANAH 658 (782)
Q Consensus 625 ----LF~gTIreN----I~~G~p~~~~s~eei~~A~~~a~l~ 658 (782)
.+..++..+ +... ....+.+++.+.++..++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~--g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLN--GRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEET--TEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEEC--CeEcCHHHHHHHHHHcCCC
Confidence 222222111 1111 1235678888888776664
No 182
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.37 E-value=7.8e-09 Score=117.73 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=98.6
Q ss_pred EEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEE
Q 003981 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIV 619 (782)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 619 (782)
++++...|. ++.+++++++++++| +.|+||+|+|||||+++|++... .|.|.++|.++.+......++++..+
T Consensus 43 l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 43 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 444544453 235789999999999 99999999999999999999875 78999999988776666667778888
Q ss_pred cccCC-CC-cccHHHHH-HcCCCCCC---CCHHHHHHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 003981 620 NQEPV-LF-SVSVGENI-AYGLPDEN---VSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAL 693 (782)
Q Consensus 620 ~Q~~~-LF-~gTIreNI-~~G~p~~~---~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARAL 693 (782)
+|+.. .+ .-.+-||| .++..... ...++..+.+. .++. .|||||+|+..|++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~-----~LL~---------------~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH-----HHHH---------------HGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH-----HHHH---------------HhcccccCccEEEEEe
Confidence 88875 23 33567788 44421110 11223222221 1121 2678888998999999
Q ss_pred ccCCCEEEEeCCCCC
Q 003981 694 LKNAPILILDEATSA 708 (782)
Q Consensus 694 lr~p~ILILDEaTSA 708 (782)
..+|++ ||||.-.
T Consensus 176 tn~p~~--LD~aLlr 188 (499)
T 2dhr_A 176 TNRPDI--LDPALLR 188 (499)
T ss_dssp CSCGGG--SCTTTSS
T ss_pred cCChhh--cCccccc
Confidence 999987 8988753
No 183
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.37 E-value=4.3e-08 Score=98.05 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=43.2
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhh-hhceEEEcccCC
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARVVSIVNQEPV 624 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~Ia~V~Q~~~ 624 (782)
++.++|+.++|+|++||||||++++|++.+ |.+.+||.++.. .... +..+++++|++.
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDED 82 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcc
Confidence 567899999999999999999999999987 999999987752 2222 234677777643
No 184
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.34 E-value=2e-07 Score=102.26 Aligned_cols=141 Identities=14% Similarity=0.247 Sum_probs=83.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC-----------CCccEEEECCeeCCCCChHhhhhceEEEcccCCC----CcccHH-
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYE-----------PTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVL----FSVSVG- 631 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~-----------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~L----F~gTIr- 631 (782)
.++|||++|||||||++.|.|... |+.|.|.++|.++. +....|++.|.|.- |..|+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999875 67899999997652 33446666654431 322322
Q ss_pred ----HHHHcCCCCCCCC---HHHH---HHHHHHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHH----HHh-ccC
Q 003981 632 ----ENIAYGLPDENVS---KDDI---IKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIA----RAL-LKN 696 (782)
Q Consensus 632 ----eNI~~G~p~~~~s---~eei---~~A~~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIA----RAL-lr~ 696 (782)
|++.+...-.+.. ++++ .+.++..++. ..| --.|+..--.+|+|++||+.++ +++ ..+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~----~~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVS----GKP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC----SCC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC----CCC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 2222221000111 1222 1222221111 111 1223444445788899998887 776 445
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 003981 697 APILILDEATSALDAVSERLVQDALNHLM 725 (782)
Q Consensus 697 p~ILILDEaTSALD~~tE~~I~~~L~~l~ 725 (782)
|++ +||||+|.++-..+.+.|.+..
T Consensus 328 ~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 328 FDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 554 8999999988888877776643
No 185
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=1.9e-07 Score=93.30 Aligned_cols=45 Identities=22% Similarity=0.112 Sum_probs=25.2
Q ss_pred EcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 546 SYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 546 ~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+|+.++..++++||||++++|+.++|+|++||||||+++.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455555678999999999999999999999999999999999877
No 186
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.32 E-value=1.2e-07 Score=102.24 Aligned_cols=69 Identities=22% Similarity=0.380 Sum_probs=56.6
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh----Hhh-----hhceEEE-cccC
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK----SEW-----ARVVSIV-NQEP 623 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~----~~l-----R~~Ia~V-~Q~~ 623 (782)
+++++||++++|+.++|+|++|+||||++..|++.+.+..|+|.+.+.|+..... ..| +..+.++ +|..
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 3468899999999999999999999999999999999999999999888765431 344 5678888 6653
No 187
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.24 E-value=1.9e-07 Score=101.61 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=50.3
Q ss_pred CcccEEEEeeEEEcCCCCCcccee--------------eeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 534 WSGDICLEDVYFSYPLRPDVVILN--------------GLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 534 ~~g~I~f~nVsF~Y~~~~~~~vL~--------------~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
..+.|+|+||+|.||. +..+|+ |+++.|.+||+++|||++|+|||||+++|+++.
T Consensus 130 ~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 130 ARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3578999999999984 467899 899999999999999999999999999999985
No 188
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.20 E-value=9e-07 Score=95.49 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=26.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
-+++|+.+.|.|++|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58999999999999999999998887643
No 189
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.19 E-value=4.7e-07 Score=90.64 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=43.5
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhH---HHhcCeEEEEeC
Q 003981 679 LSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLST---VQNAHQIALCSD 751 (782)
Q Consensus 679 LSGGQrQRIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLst---i~~aD~IiVLd~ 751 (782)
.+.|+.+|..+++.++.+|..+-.+ ++.+++...+.+.+.+... .+.++|+-+|-+.. .+.||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3688999999999998887644333 3345665555565555543 45678877887654 366999999853
No 190
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.19 E-value=1.2e-06 Score=97.58 Aligned_cols=163 Identities=20% Similarity=0.177 Sum_probs=97.8
Q ss_pred EEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHh-hhhceEE
Q 003981 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARVVSI 618 (782)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~Ia~ 618 (782)
.++++..|... . ++++|+ +|+.++++|++||||||++..|++.+.+..|+|.+.+.|+......+ ++..
T Consensus 79 ~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~--- 148 (425)
T 2ffh_A 79 YEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL--- 148 (425)
T ss_dssp HHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH---
T ss_pred HHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh---
Confidence 44566677522 1 678887 89999999999999999999999999999999999888775533221 2110
Q ss_pred EcccCCCCcccHHHHHHcCCCCCCCCHHHHHHHHHHhcchhHHHhC-CCCccccccCCCCCCC---hhHHHHHHHHHHhc
Q 003981 619 VNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISL-PQGYDTLVGERGGLLS---GGQRQRIAIARALL 694 (782)
Q Consensus 619 V~Q~~~LF~gTIreNI~~G~p~~~~s~eei~~A~~~a~l~dfI~~L-P~GldT~VGE~G~~LS---GGQrQRIaIARALl 694 (782)
.=+.|+-+....+..+..++.. +.+..+ .++||..|-+-...+. .-..+..+++|++.
T Consensus 149 ----------~~~~gv~v~~~~~~~~p~~i~~--------~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~ 210 (425)
T 2ffh_A 149 ----------GEKVGVPVLEVMDGESPESIRR--------RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (425)
T ss_dssp ----------HHHHTCCEEECCTTCCHHHHHH--------HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred ----------cccCCccEEecCCCCCHHHHHH--------HHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccC
Confidence 0012222110011223444421 222333 2567766655443443 24567778888886
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEec
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAH 735 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaH 735 (782)
.++-+|++| ++++.|..... +.+.+. -+.+-|++++
T Consensus 211 pd~vlLVvD-a~tgq~av~~a---~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 211 PDEVLLVLD-AMTGQEALSVA---RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp CSEEEEEEE-GGGTTHHHHHH---HHHHHH-TCCCEEEEES
T ss_pred CceEEEEEe-ccchHHHHHHH---HHHHhc-CCceEEEEeC
Confidence 666678888 56666654321 233322 2457777775
No 191
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.18 E-value=1.5e-08 Score=101.07 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=47.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC-CCC-h--HhhhhceEEEcccCCCCcccHHHHHHcCCCCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR-TFD-K--SEWARVVSIVNQEPVLFSVSVGENIAYGLPDE 641 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~-~i~-~--~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~ 641 (782)
...|+|+|++||||||+.++|.+. |-..+|.-++. +.. - ..+.+.+ |+.+. +|++ ||..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~~~~~~~~~~~~i~~~~----~~~~~-~g~i-~~~~l~~~-- 74 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDALAARARENKEEELKRLF----PEAVV-GGRL-DRRALARL-- 74 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHHHHHHHHHTHHHHHHHC----GGGEE-TTEE-CHHHHHHH--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHHHHHhcCChHHHHHHHH----HHHHh-CCCc-CHHHHHHH--
Confidence 357999999999999999999986 77777654331 100 0 2333332 55544 6777 66554411
Q ss_pred CCCHHHHHHHHHHhcchhHH
Q 003981 642 NVSKDDIIKAAKAANAHDFI 661 (782)
Q Consensus 642 ~~s~eei~~A~~~a~l~dfI 661 (782)
..++++.++.++ ...+++|
T Consensus 75 ~~~~~~~~~~l~-~~~~~~i 93 (203)
T 1uf9_A 75 VFSDPERLKALE-AVVHPEV 93 (203)
T ss_dssp HTTSHHHHHHHH-HHHHHHH
T ss_pred HhCCHHHHHHHH-HHhChHH
Confidence 123344444444 2334443
No 192
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.17 E-value=2.7e-06 Score=92.66 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=45.8
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEE-EECCeeCCCCChHhhhhceEEEcccCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI-TVGGEDLRTFDKSEWARVVSIVNQEPV 624 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I-~idG~di~~i~~~~lR~~Ia~V~Q~~~ 624 (782)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++|+.+.. ...+.+++++.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---~~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---DPVYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CHHHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---chHHHHHcCCchhhhh
Confidence 388999999999999999999999999988877765 67665332 2235566777766543
No 193
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.13 E-value=3.2e-06 Score=101.57 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=50.6
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhcCC-cEEEE-EecChhHHH
Q 003981 678 LLSGGQRQRIAIARALLKNAPILILDEATS-ALDAVSERLVQDALNHLMKG-RTTLV-IAHRLSTVQ 741 (782)
Q Consensus 678 ~LSGGQrQRIaIARALlr~p~ILILDEaTS-ALD~~tE~~I~~~L~~l~~~-kTvIv-IaHRLsti~ 741 (782)
-+|+|+.+|..++++++.+++++|+|||.. .+|...-..+.+.+....++ +++++ .||....+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 468999999999999999999999999997 89987666666666665544 45555 478876654
No 194
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.12 E-value=1.2e-07 Score=97.05 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=48.9
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCC------ChHh----hhhceEEEcccCCCCc
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF------DKSE----WARVVSIVNQEPVLFS 627 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i------~~~~----lR~~Ia~V~Q~~~LF~ 627 (782)
.+.++|++++|+|++||||||++++|.++ .|+|.++|.|.... .... .++.+++++|++.+|.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 34578999999999999999999999998 79999999876432 1111 2456888888876654
No 195
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.09 E-value=6.2e-06 Score=90.14 Aligned_cols=61 Identities=18% Similarity=0.140 Sum_probs=49.1
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEe--cChh
Q 003981 677 GLLSGGQRQRIAIARALLKNAPILILD-EATSALDAVSERLVQDALNHLMKGRTTLVIA--HRLS 738 (782)
Q Consensus 677 ~~LSGGQrQRIaIARALlr~p~ILILD-EaTSALD~~tE~~I~~~L~~l~~~kTvIvIa--HRLs 738 (782)
..+|+|++|++. +.+...++-|+++| ++++++|.+....+.+.+.+...++.+|+|. |.+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 457999999887 66666777889999 9999999988777777777765588899998 6663
No 196
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.05 E-value=1.2e-06 Score=91.56 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=49.4
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEEEe
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCS 750 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiVLd 750 (782)
|++|||||..+|++++||||| |.++...+ ++....|+|+++++|..+....||++++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRAAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 98775443 334446899999999999878788876664
No 197
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.95 E-value=1.6e-06 Score=100.26 Aligned_cols=59 Identities=27% Similarity=0.426 Sum_probs=48.4
Q ss_pred EEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCe
Q 003981 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE 602 (782)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~ 602 (782)
++++...|. +..+++++++++ +|+.+.|+||+|+|||||++.|++...+..|+|.++|.
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 345555553 345788888888 89999999999999999999999999998898887774
No 198
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.89 E-value=2e-05 Score=85.16 Aligned_cols=105 Identities=14% Similarity=0.213 Sum_probs=69.1
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHH
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENI 634 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI 634 (782)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.......+. +.|++=
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fSl------------- 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFSL------------- 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEES-------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEeC-------------
Confidence 466665578999999999999999999998887654432222 444331
Q ss_pred HcCCCCCCCCHHHHHHHH--HHhcchhHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 003981 635 AYGLPDENVSKDDIIKAA--KAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALD 710 (782)
Q Consensus 635 ~~G~p~~~~s~eei~~A~--~~a~l~dfI~~LP~GldT~VGE~G~~LSGGQrQRIaIARALlr~p~ILILDEaTSALD 710 (782)
+.+.+++..-+ ..+++.- ..+ . .| .||+++.||++.|...+.+++|+|.|+|...+|
T Consensus 83 -------Ems~~ql~~Rlls~~~~v~~--~~l----~-----~g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 -------EMSAEQLALRALSDLTSINM--HDL----E-----SG-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp -------SSCHHHHHHHHHHHHHCCCH--HHH----H-----HT-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred -------CCCHHHHHHHHHHHhhCCCH--HHH----h-----cC-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 13344543222 1122211 111 0 12 689999999999999999999999999876655
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.88 E-value=2.7e-06 Score=82.59 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=34.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR 605 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~ 605 (782)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999976 88999987664
No 200
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.88 E-value=1.9e-05 Score=86.35 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=32.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCcEEEEEecChhHH
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLM----KGRTTLVIAHRLSTV 740 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~----~~kTvIvIaHRLsti 740 (782)
.+|.+++|||+... |......+.+.+.+.. .+.++|+++|+....
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999987 8776666666664433 366788889988543
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.87 E-value=2.8e-06 Score=84.97 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=40.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCCh
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK 609 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~ 609 (782)
.++|+.++|+|++||||||+++.|.+++++..|.|.+.+.|....+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 56789999999999999999999999999889999887777655444
No 202
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.80 E-value=1.9e-05 Score=88.13 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=36.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDL 604 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di 604 (782)
++..++++|++||||||++..|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999999888998876664
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.76 E-value=9.1e-05 Score=78.15 Aligned_cols=71 Identities=20% Similarity=0.166 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHhcC-----CcEEEEEecChhH-----
Q 003981 680 SGGQRQRIAIARALLKNAPILILDEATSALDAVS----------ERLVQDALNHLMK-----GRTTLVIAHRLST----- 739 (782)
Q Consensus 680 SGGQrQRIaIARALlr~p~ILILDEaTSALD~~t----------E~~I~~~L~~l~~-----~kTvIvIaHRLst----- 739 (782)
++++++|-.+++|...+|.||++||+.+-++... ...+...++.... +..+|..|++...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3678888888888888999999999988765421 1223334444321 2345557787542
Q ss_pred HHhcCeEEEEe
Q 003981 740 VQNAHQIALCS 750 (782)
Q Consensus 740 i~~aD~IiVLd 750 (782)
.+.+|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 34677776653
No 204
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.75 E-value=1.3e-05 Score=87.16 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=25.8
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gl 589 (782)
-+++|+.+.|.|++|||||||+.-++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999988875
No 205
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.74 E-value=3.8e-06 Score=90.21 Aligned_cols=132 Identities=15% Similarity=0.222 Sum_probs=79.8
Q ss_pred eEEEcCCCCCccceeeeeEEEeCCc------EEEEECCCCCcHHHHHHHHHcCCCC--CccEEEECCeeCCCCChHhhhh
Q 003981 543 VYFSYPLRPDVVILNGLNLTLKSGS------VTALVGSSGAGKSTIVQLLARFYEP--TGGRITVGGEDLRTFDKSEWAR 614 (782)
Q Consensus 543 VsF~Y~~~~~~~vL~~Isl~I~~Ge------~vaIVG~SGSGKSTLl~LL~gly~p--~~G~I~idG~di~~i~~~~lR~ 614 (782)
+++.|. +...|++++..+.+++ .+||+|||||||||++++|.+++.+ ++|.
T Consensus 66 l~~~~~---~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~------------------ 124 (321)
T 3tqc_A 66 LSFYVT---ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN------------------ 124 (321)
T ss_dssp HHHHHH---HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC------------------
T ss_pred HHHhhc---chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe------------------
Confidence 445553 3467888998888877 9999999999999999999999874 4443
Q ss_pred ceEEEcccCCCCcccHHHHH----HcCCCCCCCCHHHHHHHHHHhcchhHHHhCCCCcc-ccccCCCCCCChhHHHHHHH
Q 003981 615 VVSIVNQEPVLFSVSVGENI----AYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYD-TLVGERGGLLSGGQRQRIAI 689 (782)
Q Consensus 615 ~Ia~V~Q~~~LF~gTIreNI----~~G~p~~~~s~eei~~A~~~a~l~dfI~~LP~Gld-T~VGE~G~~LSGGQrQRIaI 689 (782)
+++++||.+.++....+.. .+|.|+ ..+.+.+.+.+ ..+..|-+ ..+ -.+|-+..+|+.-
T Consensus 125 -v~~i~~D~f~~~~~~l~~~~~~~~~g~P~-~~D~~~l~~~L---------~~L~~g~~~v~~----P~yd~~~~~r~~~ 189 (321)
T 3tqc_A 125 -VEVITTDGFLYSNAKLEKQGLMKRKGFPE-SYDMPSLLRVL---------NAIKSGQRNVRI----PVYSHHYYDIVRG 189 (321)
T ss_dssp -EEEEEGGGGBCCHHHHHHTTCGGGTTSGG-GBCHHHHHHHH---------HHHHTTCSSEEE----EEEETTTTEEEEE
T ss_pred -EEEEeecccccchhhhhhHHHHhhccCcc-cccHHHHHHHH---------Hhhhcccccccc----chhhhhccccccC
Confidence 5566666665554444332 244442 34444444443 33333331 100 0122222234333
Q ss_pred HHHhccCCCEEEEeCCCCCCC
Q 003981 690 ARALLKNAPILILDEATSALD 710 (782)
Q Consensus 690 ARALlr~p~ILILDEaTSALD 710 (782)
+...+.+|+|+|+|.+..-.|
T Consensus 190 ~~~~v~~~dIVIvEGi~lL~~ 210 (321)
T 3tqc_A 190 QYEIVDQPDIVILEGLNILQT 210 (321)
T ss_dssp EEEEECSCSEEEEECTTTTCC
T ss_pred ceeeccCCCEEEEEccccccc
Confidence 345567899999998776544
No 206
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.72 E-value=3.7e-06 Score=82.14 Aligned_cols=41 Identities=34% Similarity=0.530 Sum_probs=34.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCcc--EEEECCeeCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTGG--RITVGGEDLR 605 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G--~I~idG~di~ 605 (782)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998866 67 7777876554
No 207
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.71 E-value=7e-06 Score=84.15 Aligned_cols=70 Identities=26% Similarity=0.224 Sum_probs=50.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHH---cCCCCCccEE--------EECCeeCCCCC-hHhhhhceEEEc------ccCCCCc
Q 003981 566 GSVTALVGSSGAGKSTIVQLLA---RFYEPTGGRI--------TVGGEDLRTFD-KSEWARVVSIVN------QEPVLFS 627 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~---gly~p~~G~I--------~idG~di~~i~-~~~lR~~Ia~V~------Q~~~LF~ 627 (782)
.-.++|+||+||||||+++.|+ |+.-.+.|.+ .-.|.++.+.. ..++.+++.++. |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 5545556665 23567666543 456666777766 5667777
Q ss_pred ccHHHHHH
Q 003981 628 VSVGENIA 635 (782)
Q Consensus 628 gTIreNI~ 635 (782)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 77777765
No 208
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.66 E-value=3.9e-06 Score=84.00 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=47.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CccEE----------EECCeeCCCCChHhhhhceEEEcccCCCCcccH
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRI----------TVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSV 630 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p-~~G~I----------~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTI 630 (782)
...+|..++|+|+||||||||++.|...++. ..+.| .+||.+..-++.+.+.+. +.|+.+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK---LKEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH---HHTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH---HHcCCCEEeHHh
Confidence 3568999999999999999999999987742 11111 136666666677776654 245555555554
Q ss_pred HHHHHcC
Q 003981 631 GENIAYG 637 (782)
Q Consensus 631 reNI~~G 637 (782)
.+| .||
T Consensus 85 ~~~-~~~ 90 (204)
T 2qor_A 85 ANN-FYG 90 (204)
T ss_dssp TTE-EEE
T ss_pred CCC-eec
Confidence 444 344
No 209
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.59 E-value=0.00033 Score=71.46 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=24.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCccE
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEPTGGR 596 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p~~G~ 596 (782)
+|+|||++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999977766653
No 210
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.55 E-value=3.5e-05 Score=82.10 Aligned_cols=143 Identities=18% Similarity=0.194 Sum_probs=72.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEE-CCeeCCCCChHhhhhceEEEcccCCC--CcccHHHHHHcCCCCCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV-GGEDLRTFDKSEWARVVSIVNQEPVL--FSVSVGENIAYGLPDEN 642 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~i-dG~di~~i~~~~lR~~Ia~V~Q~~~L--F~gTIreNI~~G~p~~~ 642 (782)
+.+|+|||++|+|||||++.|+|.- +.+ .+.+ ....++..+++.|+..- |-+| -|
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~-----~tTr~~~~gi~~~~~~~i~~iDT------pG----- 65 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKA-----QTTRHRIVGIHTEGAYQAIYVDT------PG----- 65 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCS-----SCCSSCEEEEEEETTEEEEEESS------SS-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCC-----CcceeeEEEEEEECCeeEEEEEC------cC-----
Confidence 4489999999999999999999863 222 1111 11123446778776531 2122 12
Q ss_pred CCHHHHHHHHHHhcchhHHHhCCCCccccc--cCCCCCCChhHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHHH-HHHH
Q 003981 643 VSKDDIIKAAKAANAHDFIISLPQGYDTLV--GERGGLLSGGQRQRIAIARALL--KNAPILILDEATSALDAVS-ERLV 717 (782)
Q Consensus 643 ~s~eei~~A~~~a~l~dfI~~LP~GldT~V--GE~G~~LSGGQrQRIaIARALl--r~p~ILILDEaTSALD~~t-E~~I 717 (782)
... +-...............+ ...|-.+ -+... +|+|++ .+++++. ..|.|+++ .-+|... +..+
T Consensus 66 ~~~-~~~~~l~~~~~~~~~~~l-~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~ 135 (301)
T 1ega_A 66 LHM-EEKRAINRLMNKAASSSI-GDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADL 135 (301)
T ss_dssp CCH-HHHHHHHHHHTCCTTSCC-CCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHH
T ss_pred CCc-cchhhHHHHHHHHHHHHH-hcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHH
Confidence 110 111111110000000111 1122211 12222 899986 5667666 67888888 5677755 4555
Q ss_pred HHHHHHhcC--C--cEEEEEecChhHH
Q 003981 718 QDALNHLMK--G--RTTLVIAHRLSTV 740 (782)
Q Consensus 718 ~~~L~~l~~--~--kTvIvIaHRLsti 740 (782)
.+.+.++.+ + .++.+.||.-.-+
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 566655543 2 2444556664433
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.51 E-value=1.7e-05 Score=95.73 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=29.2
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
|.+++|+.+.|+||+|||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998753
No 212
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=1.3e-05 Score=86.63 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=38.0
Q ss_pred ccceeeeeEEEeCCcE--EEEECCCCCcHHHHHHHHHcCCCCCcc
Q 003981 553 VVILNGLNLTLKSGSV--TALVGSSGAGKSTIVQLLARFYEPTGG 595 (782)
Q Consensus 553 ~~vL~~Isl~I~~Ge~--vaIVG~SGSGKSTLl~LL~gly~p~~G 595 (782)
..+++.++..|+.|+. +.+.||+|+||||+++.+++...+..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 4688999999999998 999999999999999999998766544
No 213
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.47 E-value=0.0001 Score=82.72 Aligned_cols=64 Identities=16% Similarity=0.292 Sum_probs=42.8
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHhc-CCcEEEEEecCh-hHHHh-cCeEEE-EeCCEEEEecC
Q 003981 696 NAPILILDEATSALDA-VSERLVQDALNHLM-KGRTTLVIAHRL-STVQN-AHQIAL-CSDGRIAELGT 759 (782)
Q Consensus 696 ~p~ILILDEaTSALD~-~tE~~I~~~L~~l~-~~kTvIvIaHRL-sti~~-aD~IiV-Ld~G~Ive~Gt 759 (782)
++++|++||+..-.+. .++..+...++.+. .++++|+.||+. ..+.. .+++.- ++.|.+++.+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~ 262 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCC
Confidence 8999999999887764 56667777776654 578888899983 33221 222322 45677666654
No 214
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.46 E-value=5.7e-05 Score=84.82 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=45.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC------------CCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcc-cHHHH
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFYE------------PTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSV-SVGEN 633 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly~------------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~g-TIreN 633 (782)
-++||||++|+|||||++.|+|... +.+|.+.++|.++.-++...+|+..++.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3799999999999999999999853 7889999999987766766667777777676666642 33455
Q ss_pred HHc
Q 003981 634 IAY 636 (782)
Q Consensus 634 I~~ 636 (782)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 215
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.46 E-value=1.7e-05 Score=79.77 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=38.7
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCcc--EEEECCeeC
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG--RITVGGEDL 604 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G--~I~idG~di 604 (782)
+.+++|..++|+|++||||||+++.|.+.+.|..| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 44678999999999999999999999999988889 899986543
No 216
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.44 E-value=2.7e-05 Score=77.21 Aligned_cols=57 Identities=28% Similarity=0.387 Sum_probs=38.1
Q ss_pred EEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHc----CCC----CCccEEEECCee
Q 003981 544 YFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLAR----FYE----PTGGRITVGGED 603 (782)
Q Consensus 544 sF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~g----ly~----p~~G~I~idG~d 603 (782)
+|+|++ -..+++++|+..+++ +++++|++|+|||||++.+.+ .|. ++.+.+.++|.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 567763 346899999998887 589999999999999999986 222 344566666643
No 217
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.42 E-value=4e-05 Score=78.33 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=32.1
Q ss_pred eeeeeEEEe---CCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEEC
Q 003981 556 LNGLNLTLK---SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVG 600 (782)
Q Consensus 556 L~~Isl~I~---~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~id 600 (782)
|.++|+.++ +|..++|.|++||||||++++|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 444444444 8999999999999999999999999988 6666543
No 218
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.39 E-value=5.9e-05 Score=72.74 Aligned_cols=33 Identities=36% Similarity=0.297 Sum_probs=28.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG 601 (782)
.|+.++|+|++||||||++++|++.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998764 56664
No 219
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.38 E-value=0.00057 Score=74.45 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=32.8
Q ss_pred cceeeeeEE---EeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-ccEEEECC
Q 003981 554 VILNGLNLT---LKSGSVTALVGSSGAGKSTIVQLLARFYEPT-GGRITVGG 601 (782)
Q Consensus 554 ~vL~~Isl~---I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~-~G~I~idG 601 (782)
+.|+.+ +. +++|+.+.|.|++|||||||+.-++...... ...++++.
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345554 33 8899999999999999999998777544322 23344444
No 220
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.37 E-value=0.0003 Score=75.32 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=30.7
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+.|+++.--+++|+.+.|.|++|+|||||+.-++.-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 457777766999999999999999999998887743
No 221
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.35 E-value=3.5e-05 Score=83.78 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=26.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCc
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~ 594 (782)
+++..+.|+||+|+|||||++.+++...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999876543
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.35 E-value=0.00019 Score=74.04 Aligned_cols=46 Identities=24% Similarity=0.406 Sum_probs=31.3
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeC
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDL 604 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di 604 (782)
.++++++.+++| +.|+||+|+|||||++.|++.+... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 455666666655 9999999999999999999987532 366666544
No 223
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.29 E-value=2.7e-05 Score=84.45 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=46.2
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR 605 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~ 605 (782)
.+++++++.+++|..++|+|++|+|||||++.|++.+.+..|+|.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 5788999999999999999999999999999999999888888887666553
No 224
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.28 E-value=1.3e-05 Score=79.35 Aligned_cols=70 Identities=24% Similarity=0.281 Sum_probs=39.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC------CCCCccEEEECCe--eCCCCC--------hHhhhhceEEEcccCCCCcccHH
Q 003981 568 VTALVGSSGAGKSTIVQLLARF------YEPTGGRITVGGE--DLRTFD--------KSEWARVVSIVNQEPVLFSVSVG 631 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl------y~p~~G~I~idG~--di~~i~--------~~~lR~~Ia~V~Q~~~LF~gTIr 631 (782)
.++|+|++||||||++++|... .+|..|...++.. +-...+ ...+++....+.|+.++++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 6899999999999999999983 3444343222110 000000 00123334567788889999999
Q ss_pred HHHHcC
Q 003981 632 ENIAYG 637 (782)
Q Consensus 632 eNI~~G 637 (782)
+|+.|.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 998863
No 225
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.25 E-value=0.00021 Score=76.58 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
.+..+.|.||+|+|||||++.+++....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3467999999999999999999987754
No 226
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.23 E-value=0.00018 Score=70.58 Aligned_cols=47 Identities=30% Similarity=0.517 Sum_probs=27.3
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHc----CCCCC----ccEEEECCe
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLAR----FYEPT----GGRITVGGE 602 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~g----ly~p~----~G~I~idG~ 602 (782)
+++++++..++. +++++|++|+|||||++.+.+ .|.|+ .+.+.++|.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 688999998877 789999999999999999997 33333 445555554
No 227
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.21 E-value=0.00036 Score=71.16 Aligned_cols=132 Identities=20% Similarity=0.221 Sum_probs=72.6
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCC-cccHHHHHHcCCCCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLF-SVSVGENIAYGLPDE 641 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF-~gTIreNI~~G~p~~ 641 (782)
+..|+.+.++|+|||||||++.+++.......|. ...+.++.|.|... .-++.+|+.-....
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~- 135 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE- 135 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC-
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc-
Confidence 4579999999999999999888765322111111 12366777777643 34667777532111
Q ss_pred CCCHHHHHHHHHHhcchhHHHhCCCCccc----cccCCCCC---CChhHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHH
Q 003981 642 NVSKDDIIKAAKAANAHDFIISLPQGYDT----LVGERGGL---LSGGQRQRIAIARALLKNAPILILDEATS-ALDAVS 713 (782)
Q Consensus 642 ~~s~eei~~A~~~a~l~dfI~~LP~GldT----~VGE~G~~---LSGGQrQRIaIARALlr~p~ILILDEaTS-ALD~~t 713 (782)
... .--|+.. .....+.. -+.|+-.+. .+.-+++-+++|+||+-. .+|...
T Consensus 136 ~~~-------------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 136 EPG-------------------KSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp CTT-------------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHH
T ss_pred ccC-------------------ceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHH
Confidence 000 0011111 11111111 234655554 344689999999999976 577766
Q ss_pred HHHHHHHHHHhcCCcEEEE
Q 003981 714 ERLVQDALNHLMKGRTTLV 732 (782)
Q Consensus 714 E~~I~~~L~~l~~~kTvIv 732 (782)
.....+.+.+..+++-+|+
T Consensus 195 ~~~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 195 LLVVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp HHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHhhCCCCeEEE
Confidence 5434444444444444443
No 228
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.16 E-value=9.7e-05 Score=80.39 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=36.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT 606 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~ 606 (782)
+++..++|+|++|||||||++.|.|.+.+.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3577999999999999999999999999999999888776554
No 229
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.13 E-value=0.00026 Score=68.28 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
++|.+++|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 230
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.12 E-value=0.00027 Score=71.28 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
++..+.|+||+|+||||+++.++.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876653
No 231
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.08 E-value=0.00098 Score=69.63 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.6
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
++++.-+.|.||+|+|||||++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567779999999999999999999865
No 232
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.07 E-value=0.00038 Score=68.90 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=23.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
..+.|.||+|+|||||++.++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999987654
No 233
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.01 E-value=0.002 Score=68.09 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=27.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCccE
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYEPTGGR 596 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~ 596 (782)
...+.|+||+|+||||+++.|++...+.+|.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 3579999999999999999999988776664
No 234
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.96 E-value=0.00033 Score=68.58 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=26.8
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 003981 558 GLNLTLKSGSVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 558 ~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl 589 (782)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999886
No 235
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.95 E-value=0.0012 Score=69.89 Aligned_cols=38 Identities=16% Similarity=0.324 Sum_probs=30.5
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEEC
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVG 600 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~id 600 (782)
+.++++..+.|.||+|+|||||++.|++... .+-+.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 4567899999999999999999999998764 3444443
No 236
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.91 E-value=0.00011 Score=80.47 Aligned_cols=59 Identities=24% Similarity=0.233 Sum_probs=37.1
Q ss_pred CcccEEEEeeEEEcCCCCCccceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECC
Q 003981 534 WSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601 (782)
Q Consensus 534 ~~g~I~f~nVsF~Y~~~~~~~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG 601 (782)
..+.|.|+|++..|. ...++++++|+| +|||++|+|||||++.|.+...+..|.+..++
T Consensus 14 ~~~~v~~~~l~~~~~---~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 14 TPGYVGFANLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -------CCHHHHHH---THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CCceEEeccchHHhC---CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 457799999999885 346889999976 99999999999999999987666666554444
No 237
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.90 E-value=0.0013 Score=74.11 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeC-CCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHH
Q 003981 681 GGQRQRIAIARALLKNAPILILDE-ATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTV 740 (782)
Q Consensus 681 GGQrQRIaIARALlr~p~ILILDE-aTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti 740 (782)
+.|++-...++..+++++++|+.. ++..+.... ..+.+.+++ .++.+|+|.++....
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 458888899999999999777643 444455544 445555654 578899999887754
No 238
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.87 E-value=0.0006 Score=73.02 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=24.7
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHc
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~g 588 (782)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999999988775
No 239
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.84 E-value=0.00015 Score=77.00 Aligned_cols=50 Identities=30% Similarity=0.355 Sum_probs=44.0
Q ss_pred ee-eeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCC
Q 003981 557 NG-LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF 607 (782)
Q Consensus 557 ~~-Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i 607 (782)
++ ++++.+ |+.++++|++|+||||++..|++.+.+..|+|.+.+.|...-
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 45 788876 999999999999999999999999999899999988876543
No 240
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.78 E-value=0.0003 Score=72.75 Aligned_cols=42 Identities=31% Similarity=0.529 Sum_probs=34.8
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR 605 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~ 605 (782)
..+++..+.|+|++||||||+++.|.+.+. .|.+.+||-.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 456788999999999999999999999875 366888886553
No 241
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.77 E-value=0.00041 Score=68.44 Aligned_cols=74 Identities=24% Similarity=0.453 Sum_probs=53.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC-------------CCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHH
Q 003981 569 TALVGSSGAGKSTIVQLLARFY-------------EPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (782)
Q Consensus 569 vaIVG~SGSGKSTLl~LL~gly-------------~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~ 635 (782)
+.|+||||||||||++.|+..+ +|-.|++ ||+|..-++.++..+.+ .++-+|-.+.+..| .
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~-~ 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN-Y 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTE-E
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH---HcCCEEEEEEEcCc-e
Confidence 7899999999999999887543 4566775 89998888888887653 46666666666555 4
Q ss_pred cCCCCCCCCHHHHHHHHH
Q 003981 636 YGLPDENVSKDDIIKAAK 653 (782)
Q Consensus 636 ~G~p~~~~s~eei~~A~~ 653 (782)
|| .+.++|.++++
T Consensus 78 YG-----t~~~~v~~~l~ 90 (186)
T 1ex7_A 78 YG-----STVASVKQVSK 90 (186)
T ss_dssp EE-----EEHHHHHHHHH
T ss_pred ee-----eecceeeehhh
Confidence 66 24566666553
No 242
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.76 E-value=0.00041 Score=69.44 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=32.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhH
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLST 739 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLst 739 (782)
.++.++++||+-. +|......+.+.+.+...+..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 3578999999876 6777777777777665456677778887653
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.76 E-value=0.00043 Score=67.65 Aligned_cols=40 Identities=35% Similarity=0.571 Sum_probs=33.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEE-EECC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI-TVGG 601 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I-~idG 601 (782)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345789999999999999999999999988776765 4554
No 244
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.76 E-value=0.00023 Score=76.72 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=32.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLS 738 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLs 738 (782)
++.|+++|| .-.++......+.+.+++...+..+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 567999999 667888888888888887655556677777664
No 245
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.75 E-value=0.00034 Score=69.41 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=27.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCee
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED 603 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~d 603 (782)
...++|+|++||||||+++.|.+.+ |.+.+|+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 4689999999999999999999876 455565543
No 246
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.68 E-value=0.0019 Score=69.92 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=30.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCe
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE 602 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~ 602 (782)
.+|..+.|.||+|+||||+++.++........-+.+++.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 456789999999999999999999887644445555544
No 247
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.68 E-value=0.0047 Score=57.82 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
.+.-+.|.|++|+|||++++.|......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 4456899999999999999999887654
No 248
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.68 E-value=0.0015 Score=62.32 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
-+++|+|++|+|||||++.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3699999999999999999998643
No 249
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.66 E-value=0.00069 Score=66.11 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=30.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCC---ccEEEECCee
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGED 603 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~p~---~G~I~idG~d 603 (782)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3579999999999999999999876543 4788887755
No 250
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.66 E-value=0.001 Score=63.05 Aligned_cols=32 Identities=25% Similarity=0.603 Sum_probs=24.7
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHH-cCCC
Q 003981 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLA-RFYE 591 (782)
Q Consensus 559 Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~-gly~ 591 (782)
.++++.+| ..+|+||+|||||||+..|. .+|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34555554 89999999999999999986 3443
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.65 E-value=0.0049 Score=67.29 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=24.7
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
-+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 37899999999999999999997666443
No 252
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.58 E-value=0.0011 Score=64.18 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.|++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 253
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.58 E-value=0.0023 Score=71.81 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=30.9
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
-|+.+.--+++|+.+.|.|++|+||||++.-++.-..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4666665589999999999999999999988876554
No 254
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.57 E-value=0.001 Score=73.16 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=34.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcC-----------CCCCccEEEECCe
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARF-----------YEPTGGRITVGGE 602 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gl-----------y~p~~G~I~idG~ 602 (782)
.+..|.+++|||++|+|||||++.|.|. .+|..|.|.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3567889999999999999999999998 6888999988764
No 255
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.54 E-value=0.0078 Score=61.80 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=35.4
Q ss_pred ChhHHHHHHHHHHhc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCcEEEEEecChhH
Q 003981 680 SGGQRQRIAIARALL---KNAPILILDEATSALDAVSERLVQDALNHLM----KGRTTLVIAHRLST 739 (782)
Q Consensus 680 SGGQrQRIaIARALl---r~p~ILILDEaTSALD~~tE~~I~~~L~~l~----~~kTvIvIaHRLst 739 (782)
+.||+.+-.+.|+++ ++++++|+--..+.++... ..+.+.+.+.. .++++|+++|....
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 344666667777774 8888766543333455444 44444454432 26799999997543
No 256
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.52 E-value=3e-05 Score=84.93 Aligned_cols=86 Identities=12% Similarity=-0.012 Sum_probs=62.2
Q ss_pred CCChhHHHHHHHHHHhc-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhHHHhcCe
Q 003981 678 LLSGGQRQRIAIARALL-KNAPILILDE---AT------SALDAVSERLVQDALNHLMK--GRTTLVIAHRLSTVQNAHQ 745 (782)
Q Consensus 678 ~LSGGQrQRIaIARALl-r~p~ILILDE---aT------SALD~~tE~~I~~~L~~l~~--~kTvIvIaHRLsti~~aD~ 745 (782)
.+|+|++||..+++++. .+|++++||| |+ +++|......+.+.|+++.+ +.|+|+++|--..-+-+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45778889999999885 5999999999 54 68999999999999977655 8999999986444455677
Q ss_pred EEEEeCCEEEEecCHHHHHh
Q 003981 746 IALCSDGRIAELGTHFELLA 765 (782)
Q Consensus 746 IiVLd~G~Ive~Gth~eLl~ 765 (782)
+.++++ +++.|+.+||.+
T Consensus 338 i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHHH--HTSCCCCSSCCC
T ss_pred HHHHHH--HhcccchhHhhc
Confidence 766654 556667666644
No 257
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.40 E-value=0.0009 Score=73.14 Aligned_cols=59 Identities=15% Similarity=0.265 Sum_probs=43.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCCCCcccHHHHHHcCCCCCCCCHHH
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDD 647 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~LF~gTIreNI~~G~p~~~~s~ee 647 (782)
+++|||++|+|||||+++|.+.. + ++.+++.. |+..|+.+. .+++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~----~v~~~~ 49 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV----PLEDER 49 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE----ECCCHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE----ecChHH
Confidence 48999999999999999999874 3 22232222 677777665 255688
Q ss_pred HHHHHHHhcchh
Q 003981 648 IIKAAKAANAHD 659 (782)
Q Consensus 648 i~~A~~~a~l~d 659 (782)
+..+|+.++.++
T Consensus 50 l~~~~~~~~~~~ 61 (368)
T 2dby_A 50 LYALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHHCBTT
T ss_pred HHHHHHHhcccc
Confidence 999998888765
No 258
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.37 E-value=0.003 Score=61.48 Aligned_cols=36 Identities=33% Similarity=0.575 Sum_probs=28.2
Q ss_pred EEEEECCCCCcHHHHHHHH-HcC----CCCCcc----EEEECCee
Q 003981 568 VTALVGSSGAGKSTIVQLL-ARF----YEPTGG----RITVGGED 603 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL-~gl----y~p~~G----~I~idG~d 603 (782)
+++|+|++|+|||||++-+ .+. |.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 6999999999999999755 444 677777 67777753
No 259
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.35 E-value=0.0017 Score=63.12 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEPT 593 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p~ 593 (782)
+++|||++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 260
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.34 E-value=0.0016 Score=64.37 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 003981 568 VTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~g 588 (782)
.++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 261
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.34 E-value=0.0082 Score=65.16 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=23.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
++..-+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999765
No 262
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.34 E-value=0.002 Score=62.13 Aligned_cols=26 Identities=38% Similarity=0.439 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
|..+.|+|+|||||||+++.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
No 263
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.31 E-value=0.012 Score=60.14 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
++..-+.|.||+|+||||+++.+++.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999999865
No 264
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.30 E-value=0.00061 Score=67.83 Aligned_cols=89 Identities=27% Similarity=0.350 Sum_probs=53.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEcccCC----CCcccHHHHHH--cC-CCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPV----LFSVSVGENIA--YG-LPD 640 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~~~----LF~gTIreNI~--~G-~p~ 640 (782)
+++|+|++||||||+++.|.+.+.+....+. ++. +|. ++...+|+.+. ++ .+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-------------------~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~ 61 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-------------------TLA-FPRYGQSVAADIAAEALHGEHGDLAS 61 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-------------------EEE-SSEEEEEEEEEEHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-------------------EEe-ecCCCCcchhhHHHHHHcccccccCC
Confidence 6899999999999999999998875333322 111 121 12344554442 11 010
Q ss_pred CCCCHHHHHHHHHHhcchhHHHhCCCCccccccCCCC
Q 003981 641 ENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGG 677 (782)
Q Consensus 641 ~~~s~eei~~A~~~a~l~dfI~~LP~GldT~VGE~G~ 677 (782)
+...+.+..++..+...+.|..++.+.++.|.++..
T Consensus 62 -~~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~~~ 97 (214)
T 1gtv_A 62 -SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYV 97 (214)
T ss_dssp -EHHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEEEE
T ss_pred -CHhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECCCc
Confidence 112234444454555467788777777888988764
No 265
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.25 E-value=2.2 Score=49.31 Aligned_cols=30 Identities=7% Similarity=0.020 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 228 PIFTVIFVMNMNTVWEKVMSIVKAQIFRRV 257 (782)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~lr~~lf~kl 257 (782)
.++..+..+.......++..++..++-.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 116 (598)
T 3qf4_B 87 YALTSLLFWLQGKIMLTLSQDVVFRLRKEL 116 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455555555554444
No 266
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.23 E-value=0.006 Score=65.03 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=25.8
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 003981 561 LTLKSGSVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 561 l~I~~Ge~vaIVG~SGSGKSTLl~LL~gl 589 (782)
--+++|..+.|.||+|+|||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999999999999998753
No 267
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.23 E-value=0.028 Score=59.10 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
++..+.|+||+|+||||+++.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999998887663
No 268
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.22 E-value=0.002 Score=62.65 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.+|..++|+|++||||||+++.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999998654
No 269
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.18 E-value=0.0017 Score=71.13 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=44.4
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhHHHhcCeEEE
Q 003981 686 RIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIAL 748 (782)
Q Consensus 686 RIaIARALlr~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLsti~~aD~IiV 748 (782)
+.+|++||..+|+++++|||| |.++ +.++++....|.+++.++|..+....+||++.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~---~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~ 255 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLET---VETALRAAETGHLVFGTLHTNTAIDTIHRIVD 255 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHH---HHHHHHHHTTTCEEEECCCCCSHHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHH---HHHHHHHHhcCCEEEEEECcchHHHHHHHHHH
Confidence 569999999999999999999 7655 34455555568999999998776666666543
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.17 E-value=0.0024 Score=60.91 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
.++|+|++||||||+++.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987654
No 271
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.15 E-value=0.0023 Score=69.42 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=24.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
..+..+.|.||+|+||||+++.+++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998764
No 272
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.12 E-value=0.0027 Score=67.52 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=35.7
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHc----CCCCCccEEEEC
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLAR----FYEPTGGRITVG 600 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~g----ly~p~~G~I~id 600 (782)
..+++..+.+ .|+-++|+|+||+||||++..|.+ +...+...|...
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~ 182 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREI 182 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEES
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEc
Confidence 5688888888 799999999999999999999887 443344444443
No 273
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.08 E-value=0.0033 Score=61.90 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+|..++|+|++||||||+++.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999887
No 274
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.08 E-value=0.0025 Score=70.11 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=45.2
Q ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhcC-CcEEEEEecChhHH-------------HhcCeEEEEeCC
Q 003981 695 KNAPILILDEATSALD---AVSERLVQDALNHLMK-GRTTLVIAHRLSTV-------------QNAHQIALCSDG 752 (782)
Q Consensus 695 r~p~ILILDEaTSALD---~~tE~~I~~~L~~l~~-~kTvIvIaHRLsti-------------~~aD~IiVLd~G 752 (782)
..|.++++||+=.-++ +.....+.+.+++.++ |..++++||+++.+ .+|+..++|...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3578999999988885 5677788888877765 77899999998754 467777777654
No 275
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.06 E-value=0.00089 Score=72.39 Aligned_cols=37 Identities=35% Similarity=0.468 Sum_probs=33.4
Q ss_pred cceeeeeEEEeCCcE--EEEECCCCCcHHHHHHHHHcCC
Q 003981 554 VILNGLNLTLKSGSV--TALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~--vaIVG~SGSGKSTLl~LL~gly 590 (782)
.+++++++.+++|+. ++|+|++||||||++++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478889999999999 9999999999999999998854
No 276
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.06 E-value=0.0032 Score=61.14 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
+|..+.|+|++||||||+++.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987554
No 277
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.04 E-value=0.016 Score=56.82 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=29.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 003981 695 KNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLS 738 (782)
Q Consensus 695 r~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLs 738 (782)
.++.++++||+-. ++......+.+.+++...+..+|+++++..
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChhh-cCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 3678999999744 566666777777776545555666676654
No 278
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.04 E-value=0.0032 Score=61.13 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.02 E-value=0.0033 Score=66.26 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=29.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG 601 (782)
.|..+.|+|+|||||||+++.|+.-++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987653 36677776
No 280
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.93 E-value=0.029 Score=71.84 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=31.4
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccE-EEECCe
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR-ITVGGE 602 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~-I~idG~ 602 (782)
+++|+.+.|.|++|+|||||+..++.......|. +++++.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 8999999999999999999999988766544333 334443
No 281
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.91 E-value=0.024 Score=63.17 Aligned_cols=35 Identities=34% Similarity=0.636 Sum_probs=28.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEE
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV 599 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~i 599 (782)
++..++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46799999999999999999999888754444543
No 282
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.90 E-value=0.0033 Score=60.86 Aligned_cols=29 Identities=38% Similarity=0.510 Sum_probs=23.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC----CCCCcc
Q 003981 567 SVTALVGSSGAGKSTIVQLLARF----YEPTGG 595 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gl----y~p~~G 595 (782)
-+++|+|++|+|||||++.+.+- |.|+.|
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 37999999999999999999876 344555
No 283
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.87 E-value=0.029 Score=59.97 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=24.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
++..-+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456789999999999999999999876
No 284
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.87 E-value=0.0034 Score=61.18 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++..+.|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998755
No 285
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.86 E-value=0.0045 Score=61.93 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=25.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG 601 (782)
.+..++|+|++||||||+++.|.. + |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c----CCEEEEc
Confidence 356899999999999999999998 2 5555554
No 286
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.85 E-value=0.004 Score=59.16 Aligned_cols=19 Identities=42% Similarity=0.705 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 003981 568 VTALVGSSGAGKSTIVQLL 586 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL 586 (782)
.++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 287
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.84 E-value=3.7 Score=47.22 Aligned_cols=97 Identities=13% Similarity=0.004 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003981 161 ITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMN 239 (782)
Q Consensus 161 ~~~~~l~~~l~~~~~~~~l~~l~~l~~~~~~l~~P~~~~~~id~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (782)
..++.++.+++..+.. ...++..++..++..+.+.+...++..++..-. ......+..+++.+++..++..+..+...
T Consensus 8 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (582)
T 3b60_A 8 STWQTFRRLWPTIAPF-KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISS 86 (582)
T ss_dssp --CHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333 333444444445555555555555555544322 22222221222223333333444445555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003981 240 TVWEKVMSIVKAQIFRRVL 258 (782)
Q Consensus 240 ~~~~~~~~~lr~~lf~kll 258 (782)
....+...++..++-.++.
T Consensus 87 ~~~~~~~~~~~~~lr~~l~ 105 (582)
T 3b60_A 87 YCISWVSGKVVMTMRRRLF 105 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666654
No 288
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.81 E-value=0.0066 Score=66.02 Aligned_cols=36 Identities=31% Similarity=0.496 Sum_probs=31.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc-----------CCCCCccEEEECC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLAR-----------FYEPTGGRITVGG 601 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~g-----------ly~p~~G~I~idG 601 (782)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 46799999999999999999998 4578889888876
No 289
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.81 E-value=0.034 Score=61.68 Aligned_cols=29 Identities=34% Similarity=0.264 Sum_probs=24.8
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.-++.+.+.|+|++||||||+++.|+.-+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999998754
No 290
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.81 E-value=0.0051 Score=61.32 Aligned_cols=28 Identities=21% Similarity=0.561 Sum_probs=22.6
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHH
Q 003981 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLA 587 (782)
Q Consensus 559 Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~ 587 (782)
.++++.+ ...+|+||+|||||||+..|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3455555 489999999999999999874
No 291
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.79 E-value=0.0032 Score=61.00 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=27.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCc---cEEEECCe
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFYEPTG---GRITVGGE 602 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly~p~~---G~I~idG~ 602 (782)
..++|+|++|||||||+..|++.+.... |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4799999999999999999998765332 55665543
No 292
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.78 E-value=0.0047 Score=62.80 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
-++|..++|+|++||||||+++.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4568899999999999999999998743
No 293
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.77 E-value=0.0097 Score=60.28 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=34.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecC-----------hhHHHhcCeEEEEe
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHR-----------LSTVQNAHQIALCS 750 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHR-----------Lsti~~aD~IiVLd 750 (782)
+++++++||+-- ++.+.-..+ ..|.+ .+.++|++-|+ ...+.-||.|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 664322222 33444 48899999992 34567799998763
No 294
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.72 E-value=0.0049 Score=61.03 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=24.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
++|..++|+|++||||||+++.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998754
No 295
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.69 E-value=0.01 Score=62.52 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
...+.+.||+|+|||+|++.|++.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467889999999999999999876
No 296
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.68 E-value=4.2 Score=46.74 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=7.6
Q ss_pred cceeeeeEEEeC
Q 003981 554 VILNGLNLTLKS 565 (782)
Q Consensus 554 ~vL~~Isl~I~~ 565 (782)
.-++|++++-+.
T Consensus 342 i~~~~v~~~y~~ 353 (582)
T 3b5x_A 342 VDVKDVTFTYQG 353 (582)
T ss_pred EEEEEEEEEcCC
Confidence 446777777643
No 297
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.67 E-value=0.0049 Score=60.19 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=24.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.++..++|+|++||||||+++.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998765
No 298
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.66 E-value=0.0056 Score=60.43 Aligned_cols=28 Identities=36% Similarity=0.544 Sum_probs=25.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
+|..++|.|++||||||+++.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999987764
No 299
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.65 E-value=0.0051 Score=59.50 Aligned_cols=27 Identities=30% Similarity=0.257 Sum_probs=23.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.++..+.|+|++||||||+++.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998655
No 300
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.63 E-value=0.0054 Score=60.79 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.4
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.++|..++|+|++||||||+++.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998754
No 301
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.49 E-value=0.0058 Score=58.84 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.47 E-value=0.0069 Score=58.11 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 003981 567 SVTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~g 588 (782)
..+.|+|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999997
No 303
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.45 E-value=0.0064 Score=62.72 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
+.++|+|++|||||||++.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999987653
No 304
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.44 E-value=0.037 Score=59.95 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
++..-+.|.||+|+|||||++.++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999999875
No 305
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.42 E-value=0.02 Score=53.43 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
.+.-+.|.|++|+|||++++.|.....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 345689999999999999999987643
No 306
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.41 E-value=0.0054 Score=60.00 Aligned_cols=29 Identities=28% Similarity=0.515 Sum_probs=25.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
++++..++|+|++||||||+++.|...+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999999999999988663
No 307
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.40 E-value=0.0044 Score=64.00 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=25.5
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+.++++..++| +.|.||+|+|||||++.+++..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 34444455555 8899999999999999999843
No 308
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.39 E-value=0.0053 Score=59.27 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=19.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
.++..+.|+|++||||||+++.|...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3578899999999999999999986543
No 309
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.38 E-value=0.0079 Score=58.42 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+..|+|+|++||||||+++.|...+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998655
No 310
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.32 E-value=0.015 Score=55.34 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 311
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.31 E-value=2.8 Score=48.25 Aligned_cols=8 Identities=0% Similarity=0.347 Sum_probs=3.5
Q ss_pred eeeeeEEE
Q 003981 556 LNGLNLTL 563 (782)
Q Consensus 556 L~~Isl~I 563 (782)
++|++++-
T Consensus 342 ~~~v~~~y 349 (578)
T 4a82_A 342 IDHVSFQY 349 (578)
T ss_dssp EEEEEECS
T ss_pred EEEEEEEc
Confidence 44444444
No 312
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.29 E-value=0.015 Score=58.84 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=26.5
Q ss_pred hccCCCEEEEeCCCCC-CC-HHHHHHHHHHHHHhcCCcEEEEEec
Q 003981 693 LLKNAPILILDEATSA-LD-AVSERLVQDALNHLMKGRTTLVIAH 735 (782)
Q Consensus 693 Llr~p~ILILDEaTSA-LD-~~tE~~I~~~L~~l~~~kTvIvIaH 735 (782)
+.++|+++|+||+-.. .+ ..++..++.....+..+.-++..+|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3368999999997632 33 2334444444444446767777777
No 313
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.28 E-value=0.02 Score=54.35 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+.-+|+|+|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999873
No 314
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.27 E-value=0.015 Score=54.58 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 003981 568 VTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~g 588 (782)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 315
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.27 E-value=0.0098 Score=64.50 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+..+.|.||+|+|||||++.+++..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999865
No 316
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.26 E-value=0.008 Score=58.27 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
.+.|.|++||||||+++.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 317
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.25 E-value=5.8 Score=45.63 Aligned_cols=10 Identities=40% Similarity=0.461 Sum_probs=6.7
Q ss_pred EEEeeEEEcC
Q 003981 539 CLEDVYFSYP 548 (782)
Q Consensus 539 ~f~nVsF~Y~ 548 (782)
.++|+||.-+
T Consensus 358 ~l~~isl~i~ 367 (587)
T 3qf4_A 358 VLSGVNFSVK 367 (587)
T ss_dssp SEEEEEEEEC
T ss_pred ceeceEEEEc
Confidence 4677777765
No 318
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.22 E-value=0.01 Score=59.40 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
++|..+.|+|+.||||||+++.|...+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4578899999999999999999987663
No 319
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.21 E-value=0.0086 Score=58.76 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999754
No 320
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.20 E-value=0.027 Score=63.10 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=27.8
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gl 589 (782)
-|+.+.--+++|+.+.|.|++|+||||++.-++.-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 35554435899999999999999999998766643
No 321
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.13 E-value=0.01 Score=57.90 Aligned_cols=24 Identities=46% Similarity=0.725 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
+++|.|++||||||+++.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988763
No 322
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.09 E-value=0.012 Score=57.95 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+..++|+|++||||||+++.|...+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
No 323
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.08 E-value=0.009 Score=60.20 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.++..+.|+|++||||||+++.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998755
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.06 E-value=0.0094 Score=58.73 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
...|+|+|++||||||+++.|...+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998665
No 325
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.06 E-value=0.011 Score=58.88 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++|+|++||||||+++.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997655
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.05 E-value=0.0096 Score=59.34 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++|+|++||||||+++.|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999997655
No 327
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.00 E-value=0.082 Score=59.06 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=24.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.+..-+.|.||+|+|||||++.+++..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999876
No 328
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.98 E-value=0.026 Score=59.97 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=26.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHH-HHHcCCCC--CccEEEECCe
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQ-LLARFYEP--TGGRITVGGE 602 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~-LL~gly~p--~~G~I~idG~ 602 (782)
+++| .+-|.||+|||||||+- ++...... ..-.++||+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 7889 89999999999999954 44433321 2224455554
No 329
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.98 E-value=0.013 Score=55.86 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
-+.++|+|+.||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998754
No 330
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.02 Score=56.50 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999987753
No 331
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.96 E-value=0.01 Score=57.54 Aligned_cols=24 Identities=46% Similarity=0.566 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly 590 (782)
..|+|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998755
No 332
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.96 E-value=0.011 Score=56.44 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly 590 (782)
..++|+|++||||||+++.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 333
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.95 E-value=0.012 Score=57.95 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998865
No 334
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.94 E-value=0.013 Score=55.65 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.++|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 335
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.94 E-value=0.013 Score=58.01 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly 590 (782)
-.++|+|++||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999998763
No 336
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.93 E-value=0.11 Score=55.20 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
..+.|.||+|+||||+++.++....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999987753
No 337
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.93 E-value=0.018 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998754
No 338
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.92 E-value=0.044 Score=58.99 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLS 738 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLs 738 (782)
++.++++||+- .++......+.+.+++...+...|+++++..
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 56899999975 3677777777777766544555666777654
No 339
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.89 E-value=0.0082 Score=60.21 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
.+..+.|+|++||||||+++.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987664
No 340
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.88 E-value=0.013 Score=54.91 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 341
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.86 E-value=0.013 Score=56.77 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998865
No 342
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.81 E-value=0.027 Score=54.13 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+.=+++++|++|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4457999999999999999999863
No 343
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.77 E-value=0.0078 Score=63.50 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=20.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
++-.|+|.|+|||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999987543
No 344
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.77 E-value=0.019 Score=55.51 Aligned_cols=22 Identities=45% Similarity=0.548 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.|++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999886
No 345
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.77 E-value=0.021 Score=55.40 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.|.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999873
No 346
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.76 E-value=0.021 Score=53.45 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 003981 568 VTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~g 588 (782)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 347
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.74 E-value=0.016 Score=54.18 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998753
No 348
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.73 E-value=0.014 Score=56.59 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+..++|+|++||||||+++.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998755
No 349
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.71 E-value=0.016 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998754
No 350
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.71 E-value=0.017 Score=61.97 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=24.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998764
No 351
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.70 E-value=0.015 Score=59.40 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
++-.++|.|++||||||+++.|...|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998665
No 352
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.016 Score=56.21 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
.=+++|+|++|+|||||++.|.+-..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34799999999999999999988653
No 353
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.69 E-value=0.013 Score=55.09 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 354
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.67 E-value=0.017 Score=53.89 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 355
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.67 E-value=0.016 Score=54.10 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 356
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.66 E-value=0.017 Score=54.42 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998644
No 357
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.66 E-value=0.015 Score=59.59 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
-.|+|.|++||||||+.+.|...+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3699999999999999999987543
No 358
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.63 E-value=0.015 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 359
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.62 E-value=0.028 Score=55.14 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.|.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 360
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.60 E-value=0.069 Score=63.86 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.+.++||+|+|||++++.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 361
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.60 E-value=0.087 Score=55.57 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+...+.|.||+|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998754
No 362
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.59 E-value=0.016 Score=59.82 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++++|.+|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
No 363
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.59 E-value=0.018 Score=54.24 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 364
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.59 E-value=0.017 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 365
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.54 E-value=0.018 Score=54.74 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++|+|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999887643
No 366
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.54 E-value=0.018 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998754
No 367
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.51 E-value=0.019 Score=54.54 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 368
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.51 E-value=0.016 Score=54.37 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 369
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.48 E-value=0.026 Score=54.28 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 370
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.48 E-value=0.02 Score=55.27 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
+++|+|++|+|||||++.+.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987653
No 371
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.45 E-value=0.017 Score=60.06 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
+++|+|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998753
No 372
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.44 E-value=0.02 Score=59.18 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
++..|.|+|++||||||+++.|...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
No 373
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.43 E-value=0.027 Score=55.79 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=28.9
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
..++..-+.+ .|..+.|+||||||||||+..|+.-.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3566666655 58899999999999999999887643
No 374
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.40 E-value=0.019 Score=54.62 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.|.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999763
No 375
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.39 E-value=0.016 Score=60.37 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|||.+|+|||||++.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
No 376
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.35 E-value=0.018 Score=55.81 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gl 589 (782)
-+++|+|++|+|||||++.|.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 377
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.32 E-value=0.047 Score=57.90 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=31.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhH
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLST 739 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLst 739 (782)
+++|+++||+-.--.......+.+.+++...+..+|+++++...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 78999999985432155566677777766556778888887653
No 378
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.31 E-value=0.022 Score=54.63 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 379
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.30 E-value=0.018 Score=60.29 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 003981 566 GSVTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~g 588 (782)
...|+|+|++||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
No 380
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.072 Score=59.27 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=25.8
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
-++|-.-+-+.||+|+|||+|++.+++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 356667799999999999999999998754
No 381
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.30 E-value=0.019 Score=55.44 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++|+|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999998764
No 382
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.27 E-value=0.022 Score=54.72 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 383
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.24 E-value=0.1 Score=66.98 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=28.1
Q ss_pred ceeeeeEE---EeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 555 ILNGLNLT---LKSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 555 vL~~Isl~---I~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
-|+.+ +. +++|+.+-|.|++|+|||||+.-++...
T Consensus 370 ~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 370 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45554 33 8999999999999999999988776544
No 384
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.23 E-value=0.11 Score=56.93 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.++.-+.|.||+|+|||+|++.++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998764
No 385
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.19 E-value=0.024 Score=53.00 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 003981 568 VTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~g 588 (782)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 386
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.19 E-value=0.021 Score=57.05 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+|..+.|+|+.||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998766
No 387
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.19 E-value=0.026 Score=53.60 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 388
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.14 E-value=0.025 Score=53.24 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 003981 567 SVTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~g 588 (782)
=+++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 389
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.14 E-value=0.036 Score=52.84 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc-----CCCCCcc
Q 003981 568 VTALVGSSGAGKSTIVQLLAR-----FYEPTGG 595 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~g-----ly~p~~G 595 (782)
+++|+|++|+|||||++.+.+ -|+|+.|
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~ 40 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCcc
Confidence 689999999999999999983 3455544
No 390
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.12 E-value=0.03 Score=54.29 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 003981 567 SVTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~g 588 (782)
-+|+|+|.+|+|||||++.+.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999987
No 391
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.025 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 392
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.08 E-value=0.032 Score=54.15 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999763
No 393
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.08 E-value=0.022 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999875
No 394
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.08 E-value=0.023 Score=53.85 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 395
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.08 E-value=0.037 Score=53.63 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 003981 568 VTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~g 588 (782)
+|+|+|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 699999999999999999986
No 396
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.07 E-value=0.025 Score=58.98 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+|++||++|+|||||++.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 397
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.07 E-value=0.089 Score=68.37 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=30.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCc-cEEEECCe
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTG-GRITVGGE 602 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~-G~I~idG~ 602 (782)
+++|+.+.|.||+|+|||||+.-++....... ..+++++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E 420 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 89999999999999999999888776554322 23445543
No 398
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.06 E-value=0.029 Score=59.60 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
+..++|+||||||||||+..|+.-+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999987663
No 399
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.03 E-value=0.027 Score=53.38 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 400
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.03 E-value=0.027 Score=53.61 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 401
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.02 E-value=0.027 Score=54.37 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+++|.+|+|||||++.|.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 402
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.97 E-value=0.064 Score=56.34 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=27.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 003981 696 NAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLS 738 (782)
Q Consensus 696 ~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIvIaHRLs 738 (782)
++.++++||+-. ++......+.+.+++...+..+|+++++..
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 478999999743 445555566677766545556667777654
No 403
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.97 E-value=0.028 Score=53.68 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6999999999999999999853
No 404
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.92 E-value=0.032 Score=60.79 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=25.9
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHH
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA 587 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~ 587 (782)
+++..+++.+| ..+|+|++|||||||+..|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35667777664 89999999999999999885
No 405
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.92 E-value=0.023 Score=56.62 Aligned_cols=25 Identities=40% Similarity=0.380 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998865
No 406
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.91 E-value=0.039 Score=54.50 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999875
No 407
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.91 E-value=0.029 Score=56.42 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=26.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46999999999999999999999988775
No 408
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.90 E-value=0.025 Score=60.84 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
..++|+||||||||||++.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 409
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.88 E-value=0.026 Score=56.19 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.++|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998755
No 410
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.87 E-value=0.11 Score=67.54 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=33.2
Q ss_pred Cccceeeee--EEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 552 DVVILNGLN--LTLKSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 552 ~~~vL~~Is--l~I~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+.+.|+++. .-+++|+.+.++|++|||||||+..+.-.-
T Consensus 1065 Gi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea 1105 (2050)
T 3cmu_A 1065 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1105 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346788887 579999999999999999999999887443
No 411
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.86 E-value=0.053 Score=54.15 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+|+|||.+|+|||||++.+.+..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999998643
No 412
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.84 E-value=0.048 Score=52.87 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
No 413
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.83 E-value=0.029 Score=59.40 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|||++|+|||||++.|+|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999985
No 414
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.83 E-value=0.04 Score=53.27 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 415
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.83 E-value=0.031 Score=56.24 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.+.|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 416
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.81 E-value=0.027 Score=57.77 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly 590 (782)
-+|+|+|++|+|||||++.|++-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999743
No 417
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.81 E-value=0.034 Score=56.21 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
.+..+.|+|+.||||||+++.|...+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999987663
No 418
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.81 E-value=0.031 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 419
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.80 E-value=0.051 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gl 589 (782)
=+++|+|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999864
No 420
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.80 E-value=0.076 Score=60.13 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.4
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++..-+.|.||+|+|||++++.++...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4566779999999999999999998754
No 421
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.80 E-value=0.031 Score=53.43 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 422
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.79 E-value=0.031 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+|+|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
No 423
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.79 E-value=0.0035 Score=75.57 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=45.0
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEEECCeeCCCCChHhhhhceEEEccc
Q 003981 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQE 622 (782)
Q Consensus 559 Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q~ 622 (782)
.++.+++++.+.++||+|+|||||++.|++... .+-|.+++.++...-..+..+++..+.|.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~~~~g~~~~~i~~~f~~ 565 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTTCCTTTSSHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhhhhcCccHHHHHHHHHH
Confidence 467788999999999999999999999999885 45677777776543333333344444443
No 424
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.77 E-value=0.028 Score=57.06 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=22.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
.+|.+|.|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987765
No 425
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.75 E-value=0.031 Score=54.46 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
No 426
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.74 E-value=0.029 Score=53.76 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999754
No 427
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.71 E-value=0.033 Score=53.75 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 428
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.68 E-value=0.035 Score=55.72 Aligned_cols=29 Identities=38% Similarity=0.434 Sum_probs=25.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
-+|.+++|.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999887753
No 429
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.65 E-value=0.019 Score=57.11 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly 590 (782)
-+|+|+|++|+|||||++.|++-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998863
No 430
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.63 E-value=0.034 Score=55.07 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly 590 (782)
-+++|+|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 431
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.62 E-value=0.016 Score=64.93 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=33.4
Q ss_pred ceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCccEEE
Q 003981 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRIT 598 (782)
Q Consensus 555 vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~p~~G~I~ 598 (782)
+++.+ +.+-+|++++|+|+||+|||||++.|.+......|.|.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 45555 67789999999999999999999999876554344443
No 432
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.60 E-value=0.042 Score=62.43 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=27.9
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 556 L~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
|+.+---+++|+.+.|.|++|+|||||+.-++.-.-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 444432489999999999999999999877665443
No 433
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.59 E-value=0.045 Score=52.88 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+|+|+|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998743
No 434
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.58 E-value=0.036 Score=54.09 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 435
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.57 E-value=0.036 Score=52.90 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 003981 568 VTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~g 588 (782)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 436
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.57 E-value=0.034 Score=58.97 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gl 589 (782)
-+|||+|++|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999985
No 437
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.55 E-value=0.036 Score=54.09 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|||.+|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 438
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.49 E-value=0.035 Score=55.67 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gl 589 (782)
-+|+|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999874
No 439
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.49 E-value=0.033 Score=54.50 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly 590 (782)
=+++|+|++|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 379999999999999999998743
No 440
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.48 E-value=0.042 Score=52.44 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=23.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
..+..+.|+|++|+||||+++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999988753
No 441
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.48 E-value=0.022 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 003981 566 GSVTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~g 588 (782)
.=+++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999873
No 442
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.47 E-value=0.038 Score=53.49 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 443
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.47 E-value=0.025 Score=58.37 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=24.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
.+++..|+|.|..||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35678999999999999999999998774
No 444
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.46 E-value=0.034 Score=53.99 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.|.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999763
No 445
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.44 E-value=0.038 Score=56.37 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=25.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
+|.+++|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999887753
No 446
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.42 E-value=0.04 Score=55.31 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
+|.+|.|.|++||||||++++|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999988775
No 447
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.42 E-value=0.041 Score=55.67 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=25.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
.+|..++|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987664
No 448
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.41 E-value=0.036 Score=59.22 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
..+.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998764
No 449
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.40 E-value=0.045 Score=52.08 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gl 589 (782)
.=+++|+|++|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999864
No 450
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.40 E-value=0.034 Score=56.53 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
+|..++|.|..||||||+++.|...+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998764
No 451
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.40 E-value=0.035 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+|+|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 452
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.32 E-value=0.04 Score=53.72 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
+++++|.+|+|||||++.+.+-+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 7999999999999999999886543
No 453
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.31 E-value=0.1 Score=59.17 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
+...|+|||+.|+||||+++-|+..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999996654
No 454
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.31 E-value=0.041 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gl 589 (782)
=+|+|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999853
No 455
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.30 E-value=0.042 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999764
No 456
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.30 E-value=0.056 Score=52.29 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=26.6
Q ss_pred cceeeeeEEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 003981 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 554 ~vL~~Isl~I~~Ge~vaIVG~SGSGKSTLl~LL~g 588 (782)
..++..-+.+ .|.-+.|.|+||+||||++..|..
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455555544 588999999999999999987765
No 457
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.28 E-value=0.038 Score=57.58 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++++|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 458
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.27 E-value=0.038 Score=54.38 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gl 589 (782)
-+|+|+|++|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 37999999999999999999874
No 459
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.26 E-value=0.043 Score=53.57 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gl 589 (782)
.=+|+|+|++|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 347999999999999999999864
No 460
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.22 E-value=0.04 Score=53.97 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999753
No 461
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.20 E-value=0.041 Score=57.67 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gl 589 (782)
..+.|+|++||||||+++.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999873
No 462
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.20 E-value=0.041 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 003981 567 SVTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~g 588 (782)
=+|+|+|++|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999985
No 463
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.17 E-value=0.04 Score=54.70 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly 590 (782)
-.++|+|++|+|||||++-|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 369999999999999999988754
No 464
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.15 E-value=0.041 Score=56.80 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+++|.+|+|||||++.|++-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
No 465
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.14 E-value=0.037 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 466
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.14 E-value=0.046 Score=56.44 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++++|.+|+|||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.14 E-value=0.043 Score=58.11 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
...+.|+||||||||||+..|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35789999999999999999997764
No 468
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.13 E-value=0.04 Score=58.17 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
.|+|||++|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999875
No 469
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.11 E-value=0.037 Score=52.64 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998863
No 470
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.09 E-value=0.049 Score=53.83 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 471
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.08 E-value=0.041 Score=56.96 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++++|++|+|||||++.|++--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 472
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.08 E-value=0.048 Score=52.73 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 003981 568 VTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~g 588 (782)
+|+|+|++|+|||||++-+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 699999999999999988865
No 473
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.05 E-value=0.034 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+|+|+|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999998654
No 474
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.03 E-value=0.15 Score=56.48 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=25.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 562 ~I~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
-+++..-+-+.||+|+|||+|++.+++...
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 355666699999999999999999998653
No 475
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.03 E-value=0.048 Score=56.51 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=23.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCccE
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFYEPTGGR 596 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly~p~~G~ 596 (782)
.++++||.+|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876654444
No 476
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.00 E-value=0.051 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gl 589 (782)
=+|+|+|++|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999853
No 477
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.97 E-value=0.046 Score=54.20 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 003981 568 VTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~g 588 (782)
+|+|+|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999986
No 478
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.96 E-value=0.065 Score=52.76 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gly 590 (782)
-+++|+|++|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998643
No 479
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.92 E-value=0.14 Score=57.04 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFYEPT 593 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly~p~ 593 (782)
+...++++|++|+||||++.-|+..+.-.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999998776543
No 480
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.90 E-value=0.069 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 003981 567 SVTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~gl 589 (782)
=+|+|+|++|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 37999999999999999998764
No 481
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.90 E-value=0.042 Score=57.35 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+|+|||.+|+|||||++.|.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999864
No 482
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.88 E-value=0.034 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=9.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 483
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.84 E-value=0.047 Score=53.40 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 484
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.79 E-value=0.076 Score=52.15 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 003981 566 GSVTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~g 588 (782)
.=+|+++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34799999999999999988874
No 485
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.69 E-value=0.035 Score=55.96 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=25.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
.++.+.+.|+||.||||+|.++.|+.-|.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 45667899999999999999999998774
No 486
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.67 E-value=0.38 Score=51.33 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
-+-+.||.|+||||+++.+++....
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCchHHHHHHHHHHHHhC
Confidence 4889999999999999999886543
No 487
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.65 E-value=0.051 Score=51.78 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=24.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 003981 564 KSGSVTALVGSSGAGKSTIVQLLARFYEP 592 (782)
Q Consensus 564 ~~Ge~vaIVG~SGSGKSTLl~LL~gly~p 592 (782)
+.+..+.|+||+|+||||+++.++.....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999887643
No 488
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.56 E-value=0.056 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 489
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.55 E-value=0.05 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 003981 566 GSVTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~g 588 (782)
.=+++|+|++|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 44799999999999999999964
No 490
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.55 E-value=0.061 Score=56.95 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 003981 565 SGSVTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 565 ~Ge~vaIVG~SGSGKSTLl~LL~gly 590 (782)
++-+++++|.+|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999987753
No 491
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.43 E-value=19 Score=41.38 Aligned_cols=44 Identities=9% Similarity=-0.066 Sum_probs=20.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchH
Q 003981 331 VLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEK 375 (782)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~ 375 (782)
.......+..++..+...+..+.+. ...+.+.-++.-..-..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~-e~l~gi~~ik~~~~e~~~~ 224 (595)
T 2yl4_A 181 IYGRYLRKLTKVTQDSLAQATQLAE-ERIGNVRTVRAFGKEMTEI 224 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHhCccHHHH
Confidence 3344444444444444444444443 3334555555555444443
No 492
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.38 E-value=0.058 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 003981 568 VTALVGSSGAGKSTIVQLLARFY 590 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gly 590 (782)
+++|+|.+|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 78999999999999999888654
No 493
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.35 E-value=0.06 Score=59.11 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
...++|+||||||||||+..|+.-+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35789999999999999999987664
No 494
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.30 E-value=0.032 Score=55.20 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.|++-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998853
No 495
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.25 E-value=0.21 Score=54.85 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=24.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 563 LKSGSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 563 I~~Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
+++-.-+-+.||+|+|||+|++.+++...
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 44445588999999999999999998754
No 496
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.09 E-value=0.068 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999999763
No 497
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.077 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 003981 568 VTALVGSSGAGKSTIVQLLARF 589 (782)
Q Consensus 568 ~vaIVG~SGSGKSTLl~LL~gl 589 (782)
+|+|+|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 498
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.02 E-value=0.082 Score=52.63 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=23.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 003981 566 GSVTALVGSSGAGKSTIVQLLARFYE 591 (782)
Q Consensus 566 Ge~vaIVG~SGSGKSTLl~LL~gly~ 591 (782)
|++|+|-|.-||||||++++|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999988764
No 499
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.02 E-value=0.047 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 003981 567 SVTALVGSSGAGKSTIVQLLAR 588 (782)
Q Consensus 567 e~vaIVG~SGSGKSTLl~LL~g 588 (782)
=+++++|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999854
No 500
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.01 E-value=0.23 Score=55.94 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=56.2
Q ss_pred ccccCCCCCCChhHHHHHHHHH--Hhcc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 003981 670 TLVGERGGLLSGGQRQRIAIAR--ALLK---------------NAPILILDEATSALDAVSERLVQDALNHLMKGRTTLV 732 (782)
Q Consensus 670 T~VGE~G~~LSGGQrQRIaIAR--ALlr---------------~p~ILILDEaTSALD~~tE~~I~~~L~~l~~~kTvIv 732 (782)
+........+||||+|-.-+|. |++. .=.+++|||| |-+|.+.-+...+-++++ |-=.|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 5556667789999999433332 2211 1257999999 999999999999988875 667777
Q ss_pred EecChhHHHhcCeEEEEe
Q 003981 733 IAHRLSTVQNAHQIALCS 750 (782)
Q Consensus 733 IaHRLsti~~aD~IiVLd 750 (782)
+|=- .....+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 7766 4446689998775
Done!