Query 003985
Match_columns 781
No_of_seqs 388 out of 3226
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:28:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s28_A Sucrose synthase 1; gly 100.0 7E-170 3E-174 1518.4 58.8 763 3-770 5-767 (816)
2 2r60_A Glycosyl transferase, g 100.0 1.7E-45 5.9E-50 420.7 35.3 434 276-770 5-461 (499)
3 3c48_A Predicted glycosyltrans 100.0 1.7E-43 6E-48 395.6 36.1 410 277-779 19-436 (438)
4 3fro_A GLGA glycogen synthase; 100.0 3.5E-43 1.2E-47 391.0 36.6 405 278-776 2-434 (439)
5 3okp_A GDP-mannose-dependent a 100.0 4.1E-40 1.4E-44 361.4 33.5 368 277-772 3-379 (394)
6 3vue_A GBSS-I, granule-bound s 100.0 5.1E-40 1.8E-44 380.7 35.0 328 406-772 152-511 (536)
7 2jjm_A Glycosyl transferase, g 100.0 2.6E-39 8.8E-44 357.5 34.8 360 299-773 24-386 (394)
8 1rzu_A Glycogen synthase 1; gl 100.0 8.1E-40 2.8E-44 371.8 30.2 433 279-774 1-477 (485)
9 2qzs_A Glycogen synthase; glyc 100.0 1.7E-39 5.7E-44 369.2 31.7 430 279-774 1-478 (485)
10 2iw1_A Lipopolysaccharide core 100.0 2.8E-39 9.7E-44 352.7 18.6 366 279-771 1-370 (374)
11 2x6q_A Trehalose-synthase TRET 100.0 7E-38 2.4E-42 348.6 29.1 372 278-771 40-413 (416)
12 2gek_A Phosphatidylinositol ma 100.0 2.3E-38 7.9E-43 349.3 24.3 363 276-771 18-382 (406)
13 3oy2_A Glycosyltransferase B73 100.0 1.1E-37 3.9E-42 346.2 20.4 357 279-770 1-388 (413)
14 2iuy_A Avigt4, glycosyltransfe 100.0 2.2E-36 7.7E-41 327.6 20.1 311 278-771 3-334 (342)
15 2x0d_A WSAF; GT4 family, trans 100.0 4.6E-33 1.6E-37 312.6 19.4 353 276-769 44-410 (413)
16 1f0k_A MURG, UDP-N-acetylgluco 100.0 7.7E-30 2.6E-34 278.0 27.0 340 278-773 6-358 (364)
17 2hy7_A Glucuronosyltransferase 100.0 2.6E-31 8.8E-36 297.3 9.0 245 407-769 124-380 (406)
18 3nb0_A Glycogen [starch] synth 100.0 2.3E-29 7.7E-34 291.1 21.8 336 406-770 180-635 (725)
19 2vsy_A XCC0866; transferase, g 100.0 4.2E-28 1.4E-32 281.1 28.0 175 561-771 368-562 (568)
20 1uqt_A Alpha, alpha-trehalose- 100.0 1.8E-27 6.3E-32 271.9 26.3 312 406-772 122-454 (482)
21 3beo_A UDP-N-acetylglucosamine 100.0 5E-28 1.7E-32 264.5 17.3 285 394-769 85-373 (375)
22 2bfw_A GLGA glycogen synthase; 100.0 2.8E-27 9.7E-32 236.4 20.4 187 524-755 2-200 (200)
23 1vgv_A UDP-N-acetylglucosamine 99.9 1E-27 3.5E-32 263.1 15.2 292 394-771 76-375 (384)
24 3qhp_A Type 1 capsular polysac 99.9 1.3E-25 4.3E-30 217.9 18.8 160 572-759 2-163 (166)
25 3t5t_A Putative glycosyltransf 99.9 1.4E-24 4.9E-29 246.7 26.1 322 394-770 135-471 (496)
26 1v4v_A UDP-N-acetylglucosamine 99.9 3.1E-24 1.1E-28 235.2 18.7 271 406-770 90-366 (376)
27 2xci_A KDO-transferase, 3-deox 99.9 1.6E-23 5.5E-28 231.8 18.4 206 470-755 149-365 (374)
28 2f9f_A First mannosyl transfer 99.9 1.8E-23 6.2E-28 206.3 14.8 151 569-745 20-173 (177)
29 3rhz_A GTF3, nucleotide sugar 99.8 3.2E-19 1.1E-23 195.0 19.8 251 405-768 72-337 (339)
30 3otg_A CALG1; calicheamicin, T 99.8 1.2E-19 4.2E-24 200.9 15.8 162 570-770 241-408 (412)
31 3s2u_A UDP-N-acetylglucosamine 99.8 1.5E-16 5.1E-21 175.3 29.5 346 277-772 1-358 (365)
32 2iyf_A OLED, oleandomycin glyc 99.8 5.3E-17 1.8E-21 181.2 25.3 161 570-769 231-398 (430)
33 3tsa_A SPNG, NDP-rhamnosyltran 99.7 1.5E-17 5.2E-22 183.1 14.8 161 571-769 218-387 (391)
34 3dzc_A UDP-N-acetylglucosamine 99.7 5.6E-17 1.9E-21 180.8 18.4 275 390-746 97-378 (396)
35 4fzr_A SSFS6; structural genom 99.7 1.1E-17 3.9E-22 185.0 11.8 149 570-758 226-390 (398)
36 3ia7_A CALG4; glycosysltransfe 99.7 1.1E-15 3.9E-20 168.0 20.4 159 570-770 230-398 (402)
37 3oti_A CALG3; calicheamicin, T 99.7 7.4E-16 2.5E-20 170.5 18.9 157 570-769 231-396 (398)
38 3ot5_A UDP-N-acetylglucosamine 99.7 5.9E-16 2E-20 173.0 17.4 269 390-746 100-372 (403)
39 3rsc_A CALG2; TDP, enediyne, s 99.6 3.1E-14 1.1E-18 157.9 25.1 158 570-769 246-412 (415)
40 2p6p_A Glycosyl transferase; X 99.6 1.8E-14 6.2E-19 158.2 21.8 139 572-750 211-362 (384)
41 2yjn_A ERYCIII, glycosyltransf 99.5 7.5E-13 2.6E-17 148.7 18.0 158 572-771 268-436 (441)
42 4hwg_A UDP-N-acetylglucosamine 99.4 1E-12 3.6E-17 145.8 12.9 262 391-744 81-351 (385)
43 2c4m_A Glycogen phosphorylase; 99.4 4.8E-12 1.6E-16 149.0 18.7 331 407-768 289-719 (796)
44 3h4t_A Glycosyltransferase GTF 99.4 3.2E-11 1.1E-15 134.1 23.4 137 570-747 220-363 (404)
45 1l5w_A Maltodextrin phosphoryl 99.4 1.1E-11 3.8E-16 146.0 18.7 333 407-772 299-730 (796)
46 2iya_A OLEI, oleandomycin glyc 99.3 2.1E-10 7.2E-15 127.7 26.9 143 570-749 254-403 (424)
47 3q3e_A HMW1C-like glycosyltran 99.3 6.6E-11 2.2E-15 136.9 20.0 186 563-772 432-627 (631)
48 2gj4_A Glycogen phosphorylase, 99.3 4.4E-11 1.5E-15 141.4 18.4 263 465-759 428-744 (824)
49 1iir_A Glycosyltransferase GTF 99.2 4.2E-10 1.4E-14 125.3 22.8 136 571-748 238-381 (415)
50 1rrv_A Glycosyltransferase GTF 99.2 5.9E-10 2E-14 124.0 21.4 135 571-747 237-381 (416)
51 4amg_A Snogd; transferase, pol 99.2 6.7E-11 2.3E-15 130.0 12.8 140 570-747 236-380 (400)
52 2o6l_A UDP-glucuronosyltransfe 99.0 8.3E-10 2.8E-14 107.3 10.7 134 571-744 21-163 (170)
53 4gyw_A UDP-N-acetylglucosamine 97.8 0.00019 6.5E-09 85.7 16.6 183 560-769 513-702 (723)
54 2pq6_A UDP-glucuronosyl/UDP-gl 97.8 0.011 3.9E-07 66.8 30.2 95 640-750 352-453 (482)
55 2c1x_A UDP-glucose flavonoid 3 97.7 0.0026 8.9E-08 71.7 22.8 95 640-750 324-426 (456)
56 2vch_A Hydroquinone glucosyltr 97.7 0.012 4.1E-07 66.6 28.4 65 660-729 351-427 (480)
57 2acv_A Triterpene UDP-glucosyl 97.6 0.015 5.2E-07 65.5 26.6 78 641-729 332-423 (463)
58 3hbf_A Flavonoid 3-O-glucosylt 97.6 0.0084 2.9E-07 67.6 24.1 93 640-749 326-427 (454)
59 1psw_A ADP-heptose LPS heptosy 97.4 0.0069 2.4E-07 64.8 19.2 100 572-695 181-286 (348)
60 3hbm_A UDP-sugar hydrolase; PS 97.4 0.0056 1.9E-07 64.6 17.9 94 572-696 158-251 (282)
61 3tov_A Glycosyl transferase fa 96.4 0.17 6E-06 54.5 20.0 103 569-696 182-287 (349)
62 1ygp_A Yeast glycogen phosphor 95.7 0.084 2.9E-06 62.8 13.9 142 565-715 588-761 (879)
63 2gt1_A Lipopolysaccharide hept 87.3 1.7 5.8E-05 45.7 9.3 98 572-695 179-278 (326)
64 2jzc_A UDP-N-acetylglucosamine 83.5 0.74 2.5E-05 46.7 3.9 64 657-728 124-196 (224)
65 3heb_A Response regulator rece 66.5 47 0.0016 29.6 11.1 109 604-729 5-133 (152)
66 3l7i_A Teichoic acid biosynthe 66.2 22 0.00074 41.9 10.8 65 657-729 608-681 (729)
67 1k68_A Phytochrome response re 65.5 64 0.0022 27.7 11.5 109 604-729 3-129 (140)
68 1uan_A Hypothetical protein TT 65.1 13 0.00044 37.4 7.4 22 392-416 83-104 (227)
69 3h5i_A Response regulator/sens 64.8 72 0.0025 27.9 12.0 107 604-729 6-122 (140)
70 3kht_A Response regulator; PSI 60.0 56 0.0019 28.7 10.2 111 603-730 5-127 (144)
71 1k66_A Phytochrome response re 58.9 77 0.0026 27.6 10.9 110 603-729 6-136 (149)
72 2pln_A HP1043, response regula 57.4 52 0.0018 28.6 9.4 106 602-729 17-131 (137)
73 2zay_A Response regulator rece 57.3 68 0.0023 28.2 10.3 109 603-730 8-127 (147)
74 2dvz_A BUGE, putative exported 57.2 1.3E+02 0.0045 31.4 13.9 148 573-746 116-280 (314)
75 4b4o_A Epimerase family protei 56.0 6.2 0.00021 40.5 3.2 33 279-340 1-33 (298)
76 2qvg_A Two component response 54.4 1E+02 0.0036 26.6 11.0 107 604-727 8-131 (143)
77 2ixd_A LMBE-related protein; h 53.7 24 0.00083 35.7 7.2 24 391-417 84-107 (242)
78 2f5x_A BUGD; periplasmic bindi 53.7 1.2E+02 0.0041 31.6 12.9 148 573-746 112-276 (312)
79 3h1g_A Chemotaxis protein CHEY 51.1 1.2E+02 0.004 26.0 11.0 108 604-729 6-125 (129)
80 3ius_A Uncharacterized conserv 50.6 6.5 0.00022 39.9 2.3 36 276-341 3-38 (286)
81 3grc_A Sensor protein, kinase; 50.5 1.2E+02 0.0042 26.1 12.1 109 603-730 6-126 (140)
82 2phj_A 5'-nucleotidase SURE; S 49.7 95 0.0032 31.7 10.7 38 278-342 1-38 (251)
83 1j9j_A Stationary phase surviV 48.1 1.7E+02 0.006 29.6 12.5 36 403-438 82-128 (247)
84 3gt7_A Sensor protein; structu 48.0 1.4E+02 0.0048 26.5 11.0 110 603-731 7-127 (154)
85 2qpq_A Protein BUG27; alpha/be 46.2 91 0.0031 32.4 10.4 148 573-746 103-267 (301)
86 3to5_A CHEY homolog; alpha(5)b 45.5 1.7E+02 0.0059 26.3 11.5 110 603-730 12-132 (134)
87 1i3c_A Response regulator RCP1 45.1 1.6E+02 0.0055 25.9 11.0 110 603-729 8-135 (149)
88 4e7p_A Response regulator; DNA 44.1 1.2E+02 0.0042 26.7 9.8 110 604-730 21-139 (150)
89 3ilh_A Two component response 43.8 1.5E+02 0.0052 25.5 10.3 110 603-729 9-137 (146)
90 3cg4_A Response regulator rece 41.9 1.7E+02 0.0057 25.2 12.7 108 603-729 7-125 (142)
91 4dad_A Putative pilus assembly 41.1 83 0.0029 27.6 8.1 111 603-730 20-140 (146)
92 2vzf_A NADH-dependent FMN redu 41.1 18 0.00061 35.0 3.6 37 277-331 1-38 (197)
93 3eul_A Possible nitrate/nitrit 40.7 1.6E+02 0.0054 25.9 10.0 112 602-730 14-134 (152)
94 3jte_A Response regulator rece 38.6 1.9E+02 0.0065 24.9 11.5 107 604-729 4-121 (143)
95 3l4b_C TRKA K+ channel protien 37.7 62 0.0021 31.4 7.1 30 406-435 64-96 (218)
96 4gi5_A Quinone reductase; prot 37.6 36 0.0012 35.3 5.5 36 278-331 22-57 (280)
97 2qzj_A Two-component response 37.4 1.9E+02 0.0066 24.9 9.9 108 603-729 4-119 (136)
98 3hzh_A Chemotaxis response reg 37.3 1.2E+02 0.004 27.2 8.6 107 604-729 37-155 (157)
99 3n53_A Response regulator rece 37.2 2E+02 0.0069 24.7 10.6 75 655-729 35-120 (140)
100 4fle_A Esterase; structural ge 36.5 1.6E+02 0.0055 27.2 9.7 32 405-437 60-91 (202)
101 2j48_A Two-component sensor ki 35.9 1.1E+02 0.0039 24.9 7.7 105 605-728 3-115 (119)
102 2qr3_A Two-component system re 35.7 1.7E+02 0.0058 25.0 9.2 107 604-729 4-124 (140)
103 3cg0_A Response regulator rece 35.6 2.1E+02 0.0071 24.4 10.5 108 603-729 9-126 (140)
104 3m2p_A UDP-N-acetylglucosamine 35.5 21 0.00071 36.7 3.3 35 277-340 1-35 (311)
105 3lkv_A Uncharacterized conserv 34.9 3.7E+02 0.013 27.2 13.7 115 587-717 126-245 (302)
106 3cnb_A DNA-binding response re 34.0 2.2E+02 0.0076 24.3 10.0 110 603-730 8-129 (143)
107 3hdv_A Response regulator; PSI 33.3 2.3E+02 0.0077 24.2 11.7 108 603-729 7-125 (136)
108 3kcn_A Adenylate cyclase homol 33.3 2.5E+02 0.0084 24.6 12.9 106 604-729 5-121 (151)
109 3p0r_A Azoreductase; structura 33.1 40 0.0014 33.0 4.8 39 277-331 3-43 (211)
110 4egb_A DTDP-glucose 4,6-dehydr 32.3 2.2E+02 0.0077 29.0 10.8 14 318-331 39-52 (346)
111 1jwq_A N-acetylmuramoyl-L-alan 31.8 36 0.0012 32.8 4.1 27 309-340 27-54 (179)
112 2rdm_A Response regulator rece 31.4 2.3E+02 0.008 23.8 11.5 106 603-729 5-121 (132)
113 1d4a_A DT-diaphorase, quinone 31.2 56 0.0019 33.5 5.7 37 277-331 1-37 (273)
114 2fzv_A Putative arsenical resi 30.4 31 0.0011 35.8 3.6 51 259-331 43-93 (279)
115 2e6c_A 5'-nucleotidase SURE; S 30.4 2.3E+02 0.0078 28.7 9.9 35 404-438 84-129 (244)
116 2qsj_A DNA-binding response re 29.6 2.3E+02 0.008 24.7 9.2 109 603-729 3-122 (154)
117 3ew7_A LMO0794 protein; Q8Y8U8 29.1 32 0.0011 33.0 3.2 19 318-340 15-33 (221)
118 3hdg_A Uncharacterized protein 28.7 2.6E+02 0.0088 23.8 9.1 108 603-729 7-123 (137)
119 3lte_A Response regulator; str 28.2 2.7E+02 0.0092 23.4 10.4 108 603-729 6-123 (132)
120 3lua_A Response regulator rece 28.0 1.7E+02 0.0056 25.3 7.7 107 604-729 5-125 (140)
121 3h2s_A Putative NADH-flavin re 27.7 35 0.0012 32.9 3.2 19 318-340 15-33 (224)
122 3t6k_A Response regulator rece 27.3 3E+02 0.01 23.6 11.1 108 604-730 5-123 (136)
123 3f6c_A Positive transcription 26.9 2.9E+02 0.0098 23.3 10.2 107 604-729 2-118 (134)
124 1l5x_A SurviVal protein E; str 26.6 3.2E+02 0.011 28.1 10.5 34 405-438 82-127 (280)
125 1qkk_A DCTD, C4-dicarboxylate 26.3 3.3E+02 0.011 23.8 12.1 107 604-729 4-119 (155)
126 1rcu_A Conserved hypothetical 25.0 39 0.0013 33.2 3.0 69 657-727 110-191 (195)
127 2q62_A ARSH; alpha/beta, flavo 24.9 73 0.0025 32.2 5.1 46 268-331 23-69 (247)
128 2qxy_A Response regulator; reg 24.8 1.8E+02 0.0063 25.0 7.4 107 604-729 5-119 (142)
129 3nhm_A Response regulator; pro 24.8 3.1E+02 0.011 23.0 12.4 76 655-730 36-121 (133)
130 2x4g_A Nucleoside-diphosphate- 24.7 47 0.0016 34.3 3.7 20 318-341 28-47 (342)
131 3eod_A Protein HNR; response r 24.0 2.2E+02 0.0077 23.9 7.7 108 603-729 7-124 (130)
132 1dbw_A Transcriptional regulat 23.9 3.2E+02 0.011 22.8 11.3 108 603-729 3-119 (126)
133 3m6m_D Sensory/regulatory prot 23.4 3.3E+02 0.011 23.6 8.9 108 603-729 14-134 (143)
134 3i42_A Response regulator rece 23.3 3.3E+02 0.011 22.7 10.7 107 604-729 4-120 (127)
135 3c24_A Putative oxidoreductase 23.1 50 0.0017 33.7 3.6 36 276-340 9-44 (286)
136 2gkg_A Response regulator homo 23.0 3.2E+02 0.011 22.5 10.8 106 604-729 6-123 (127)
137 3gl9_A Response regulator; bet 22.8 3.4E+02 0.012 22.7 10.4 106 605-729 4-120 (122)
138 3c1o_A Eugenol synthase; pheny 22.5 58 0.002 33.3 3.9 20 318-341 19-38 (321)
139 1kjq_A GART 2, phosphoribosylg 22.3 3.5E+02 0.012 28.3 10.3 18 318-339 25-42 (391)
140 1p2f_A Response regulator; DRR 22.2 2.2E+02 0.0075 26.9 8.0 107 604-731 3-117 (220)
141 3cz5_A Two-component response 22.0 3.9E+02 0.013 23.2 9.9 110 603-729 5-123 (153)
142 3bfv_A CAPA1, CAPB2, membrane 21.8 74 0.0025 32.4 4.5 34 187-222 6-39 (271)
143 1hdo_A Biliverdin IX beta redu 21.7 56 0.0019 30.6 3.4 20 318-341 18-37 (206)
144 3dqp_A Oxidoreductase YLBE; al 21.6 41 0.0014 32.5 2.3 20 318-341 15-34 (219)
145 3rpe_A MDAB, modulator of drug 21.5 99 0.0034 30.7 5.2 46 271-331 19-64 (218)
146 1y81_A Conserved hypothetical 21.2 4.5E+02 0.015 23.6 9.7 19 318-340 32-50 (138)
147 3hv2_A Response regulator/HD d 20.8 4.2E+02 0.014 23.1 9.9 108 603-729 14-131 (153)
148 3vps_A TUNA, NAD-dependent epi 20.8 54 0.0019 33.3 3.2 21 318-342 22-42 (321)
149 3dhn_A NAD-dependent epimerase 20.7 43 0.0015 32.3 2.3 20 318-341 19-38 (227)
150 2duw_A Putative COA-binding pr 20.6 3.1E+02 0.01 24.9 8.1 19 318-340 31-49 (145)
151 3hn2_A 2-dehydropantoate 2-red 20.5 63 0.0022 33.5 3.7 19 318-340 16-34 (312)
152 3i83_A 2-dehydropantoate 2-red 20.4 54 0.0019 34.1 3.2 19 318-340 16-34 (320)
153 3r6d_A NAD-dependent epimerase 20.3 54 0.0018 31.6 3.0 19 318-340 20-39 (221)
154 2cp8_A NEXT to BRCA1 gene 1 pr 20.2 84 0.0029 24.3 3.3 20 219-238 2-21 (54)
155 3uqz_A DNA processing protein 20.2 1.1E+02 0.0036 32.0 5.2 126 584-724 143-279 (288)
156 2gwr_A DNA-binding response re 20.1 5.7E+02 0.019 24.3 11.4 108 604-730 6-121 (238)
No 1
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=7.5e-170 Score=1518.41 Aligned_cols=763 Identities=67% Similarity=1.116 Sum_probs=709.4
Q ss_pred CCCCCCCcchHHHHHHHHhHhHHHHHHHHHHHHhcCCcccchhhHHHHHHhhhcCcccccccCCCcHHHHHhhcceeeec
Q 003985 3 APKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVL 82 (781)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 82 (781)
+++|+|++||+|+++++|++||++|++||++|+++||++|++|||+++|+++|+ .+++++.+|+||++|++||||||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 82 (816)
T 3s28_A 5 ERMITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPE--QTRKKLEGGPFFDLLKSTQEAIVL 82 (816)
T ss_dssp ----------------------CTTHHHHHHHHHHHTCSEEEEHHHHHHTTTTT--SCGGGCCCSTHHHHHHTEEEEEEC
T ss_pred ccccccchhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH--hhhcccccCcHHHHHHhhhheeec
Confidence 368999999999999999999999999999999999999999999999999993 466888999999999999999999
Q ss_pred CCeEEEEEcCCCceEEEEEEecCcceeeecChHHHhhhcchhcccccCCCceeeeeccccccCCCCCCCCCCCCchhhhh
Q 003985 83 PPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDASFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFL 162 (781)
Q Consensus 83 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (781)
|||||||||||||+|||||||++||+||+|||+|||+|||+|||++.+++++||+||+|||++||+|++|+||||||+||
T Consensus 83 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (816)
T 3s28_A 83 PPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEELVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFL 162 (816)
T ss_dssp SSEEEEEEEEETTEEEEEEEETTSSCEEEECHHHHHHHHHHHHHSSCCCTTSCEEECGGGGTTSCCCCCGGGTTBHHHHH
T ss_pred CCeEEEEEcCCCcceEEEEEEhhhCceeeecHHHHHHhHHHhcCCCCCCCCceEEeccccccCCCCCCCcccccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCCCCchhHHHHHhhcccCCeeeecccccCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHhhhcCCcccc
Q 003985 163 NRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLNDRIQSISRLQSSLSKAEDHLSKLPPDTPFSQFEYVLQGMGFEKGW 242 (781)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw 242 (781)
|||||||||+|++++++||+||+.|+|+|++|||||||+|+++|++||++|++||+++|+||||++|+++||+|||||||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (816)
T 3s28_A 163 NRHLSAKLFHDKESLLPLLKFLRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGW 242 (816)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHCEETTEEBSBCTTCCSHHHHHHHHHHHHHHHHHSCTTCBHHHHHHHHHHTTBCBCS
T ss_pred HHHHHhhhcCChhhhHHHHHHHHHcccCCeeeeccCCcCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcCCCcccHhhhhcCCCCceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHH
Q 003985 243 GDTAEHVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLR 322 (781)
Q Consensus 243 g~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~r~p~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~ 322 (781)
||||+||+|||++|+++|++|||++||+|++|+||+|||+|+|+|||++|.++||+||||||++||+||||+||++|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~ 322 (816)
T 3s28_A 243 GDNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQR 322 (816)
T ss_dssp CSBHHHHHHHHHHHHHHHHSCCHHHHHHHHHHSCCCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcCCCcccHHHHhccCCceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCceeeceeEEEccCCCCCCCccCcceeeecCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHH
Q 003985 323 IKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITA 402 (781)
Q Consensus 323 L~~~GheV~~~v~VlT~~~p~~~~~~~~~~~e~v~~~~~~~I~rvP~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~ 402 (781)
|+++||+|+|+|+|+|+.+++..++.|.++.+.+.+++|++|+|+|+++.++++++|++++.+|+|+..|+.++...+..
T Consensus 323 L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~ 402 (816)
T 3s28_A 323 IKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSK 402 (816)
T ss_dssp HHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHCCCccceeeEEEeCCCCCCCCCccCCcceeecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999888887777
Q ss_pred HcCCCceEEEEcCCCchHHHHHHHHHcCCcEEEEecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecC
Q 003985 403 ELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITST 482 (781)
Q Consensus 403 ~l~~~pDIIh~~~~~~~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S 482 (781)
..+++|||||+|++.+++++.++++++|+|+|+|+|+++..++..++.+|+.+...|++++++.++..+++.||.|||+|
T Consensus 403 ~~~~~PDVIHsH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S 482 (816)
T 3s28_A 403 ELNGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITST 482 (816)
T ss_dssp HCSSCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESC
T ss_pred hcCCCCeEEEeCCchHHHHHHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECC
Confidence 76779999999999999999999999999999999999988888888899999999999999999999999999999999
Q ss_pred HHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCcccccc
Q 003985 483 YQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDE 562 (781)
Q Consensus 483 ~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~ 562 (781)
.++++.+.+.+++|.++.+|++|++|++++|++++.+|+.|||||+|.+.|.|......++...++.++..++++.+.++
T Consensus 483 ~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~ 562 (816)
T 3s28_A 483 FQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKE 562 (816)
T ss_dssp HHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTT
T ss_pred HHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHH
Confidence 99999888899999999999999999999999999999999999999999999887776777788889999999999999
Q ss_pred ccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCc
Q 003985 563 HVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQ 642 (781)
Q Consensus 563 ~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~ 642 (781)
.+|++.++++++|+|+||+++.||++.+++|++++.+.+++++|+|+|+|++ ..+.++++.++.++++++++++++.++
T Consensus 563 ~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~-~~~~~~e~~~~~~~L~~li~~lgL~~~ 641 (816)
T 3s28_A 563 HLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRR-KESKDNEEKAEMKKMYDLIEEYKLNGQ 641 (816)
T ss_dssp EESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTT-SCCCCHHHHHHHHHHHHHHHHTTCBBB
T ss_pred HhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCc-ccccchhhHHHHHHHHHHHHHcCCCCc
Confidence 9999888899999999999999999999999999988778999999999986 677888999999999999999999999
Q ss_pred EEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHH
Q 003985 643 FRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAA 722 (781)
Q Consensus 643 V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~G~lv~p~d~e~lA 722 (781)
|+|+|++++.++.+++++++++++|+||+||.+|+||++++||||||+|||+|+.||+.|+|.++.+|++++|+|++++|
T Consensus 642 V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA 721 (816)
T 3s28_A 642 FRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAA 721 (816)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHH
T ss_pred EEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHH
Confidence 99999888888889999999966899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHH
Q 003985 723 ELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVIN 770 (781)
Q Consensus 723 ~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~ 770 (781)
++|.++++++..|++.+++++++|++++.++|||+.. ++.|.+++.
T Consensus 722 ~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~--a~~ll~lY~ 767 (816)
T 3s28_A 722 DTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIY--SQRLLTLTG 767 (816)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHH
Confidence 9999998888899999999999999999999999764 444555443
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=1.7e-45 Score=420.71 Aligned_cols=434 Identities=28% Similarity=0.475 Sum_probs=313.5
Q ss_pred CCceEEEEEccCcCCcccc--cCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCccCcce
Q 003985 276 PMVFNVVILSPHGYFGQAN--VLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRL 353 (781)
Q Consensus 276 p~~~rI~ivS~hg~~~~~~--vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~~~~~~ 353 (781)
.+.|||++++++++|.... +.+.|..||.++++. +|+++|+++||+|+ |+|..........+....
T Consensus 5 ~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~ 72 (499)
T 2r60_A 5 TRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVK--------EVSLALAEMGVQVD----IITRRIKDENWPEFSGEI 72 (499)
T ss_dssp --CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCCBTTBGGGCCSE
T ss_pred cccceEEEEecCCCccccccccCCCCCCCCeeehHH--------HHHHHHHhcCCeEE----EEeCCCCcccccchhhhH
Confidence 3458999999998875432 344578999999999 77777899999999 988764321111222223
Q ss_pred eeecCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcE
Q 003985 354 ERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQ 433 (781)
Q Consensus 354 e~v~~~~~~~I~rvP~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~l~~~pDIIh~~~~~~~lva~llar~~gvp~ 433 (781)
+......+++++++|..... +..+..+|.++..+...+.+.+++. ..+|||||+|++..++++.++++..++|+
T Consensus 73 ~~~~~~~gv~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~Divh~~~~~~~~~~~~~~~~~~~p~ 146 (499)
T 2r60_A 73 DYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKIINFYREE-GKFPQVVTTHYGDGGLAGVLLKNIKGLPF 146 (499)
T ss_dssp EECTTCSSEEEEEECCSCSS-----CCCGGGCGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHCCCE
T ss_pred HhccCCCCeEEEEecCCCcC-----CcCHHHHHHHHHHHHHHHHHHHHhc-CCCCCEEEEcCCcchHHHHHHHHhcCCcE
Confidence 33322357899999876432 2233456666655555555555542 24899999998777788888899999999
Q ss_pred EEEecCCccccCC---CChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceee
Q 003985 434 CTIAHALEKTKYP---DSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRV 510 (781)
Q Consensus 434 v~t~H~l~~~k~~---~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v 510 (781)
|++.|+....... ........+...|++......+..+++.||.||++|....+.+.+..
T Consensus 147 v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~----------------- 209 (499)
T 2r60_A 147 TFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHD----------------- 209 (499)
T ss_dssp EEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSG-----------------
T ss_pred EEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhh-----------------
Confidence 9999986432210 00000011122233333334567789999999999988765321110
Q ss_pred ecc-C-CC-CCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccC-----CCCCCCCCEEEEEeecc
Q 003985 511 VHG-I-DV-FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVG-----TLSDRSKPIVFSMARLD 582 (781)
Q Consensus 511 ~~g-i-~~-f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~~~g-----~l~~~~k~iIl~vGRL~ 582 (781)
..| + +. ...++.|||||+|.+.|.+......+. . .++.+| + ++++++|+++||+.
T Consensus 210 ~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~-~--------------~r~~~~~~~~~~--~~~~~~i~~vGrl~ 272 (499)
T 2r60_A 210 LYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKA-K--------------ITKYLERDLGSE--RMELPAIIASSRLD 272 (499)
T ss_dssp GGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHH-H--------------HHHHHHHHSCGG--GTTSCEEEECSCCC
T ss_pred cccccccccCCCCeEEECCCcChhhcCccchhhhHH-H--------------HHHHhccccccc--CCCCcEEEEeecCc
Confidence 002 1 00 256899999999999887764311110 0 012244 3 45788999999999
Q ss_pred CCCChHHHHHHHHHhhccCCC-eEEEEEeCcCCCCCCc---chHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHH
Q 003985 583 HVKNMTGLVECYGKNSQLREL-VNLVVVAGYIDVNKSK---DREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGEL 658 (781)
Q Consensus 583 ~~Kgl~~LieA~~~l~~~~~~-~~LvIVG~g~~~~~~~---d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el 658 (781)
+.||++.+++|++++.+..++ +.|+|+|+++.+..++ +.++.++.+.++++++++++.++|+|+| .++.+++
T Consensus 273 ~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G----~v~~~~~ 348 (499)
T 2r60_A 273 QKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFP----LNSQQEL 348 (499)
T ss_dssp GGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEE----CCSHHHH
T ss_pred cccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECC----CCCHHHH
Confidence 999999999999998765444 5899999833210110 1234455789999999999999999999 6778899
Q ss_pred HHHHHccC----cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccC
Q 003985 659 YRYIADTK----GAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKE 734 (781)
Q Consensus 659 ~~~la~aa----dvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~~l~~ 734 (781)
..+|+. + |++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++++|+|+++++++|.+++ .
T Consensus 349 ~~~~~~-a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll----~ 423 (499)
T 2r60_A 349 AGCYAY-LASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAF----E 423 (499)
T ss_dssp HHHHHH-HHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHH----S
T ss_pred HHHHHh-cCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHH----h
Confidence 999995 9 999999999999999999999999999999999999999999999999999999999998887 8
Q ss_pred CHHHHHHHHHHHHHHHHHhcCcchh--hhccchHHHHH
Q 003985 735 NPSHWKKISDGGLKRIYERLVVSSD--GIVDPSPFVIN 770 (781)
Q Consensus 735 dp~~~~~~s~~a~~~v~~~ysw~~~--~il~~ye~ll~ 770 (781)
|++.+++++++|++++.++|||+.+ .+.+.|+++++
T Consensus 424 ~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~ 461 (499)
T 2r60_A 424 SEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIAD 461 (499)
T ss_dssp CHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888999876 55556666654
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.7e-43 Score=395.61 Aligned_cols=410 Identities=21% Similarity=0.296 Sum_probs=297.2
Q ss_pred CceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCccCcceeee
Q 003985 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV 356 (781)
Q Consensus 277 ~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~~~~~~e~v 356 (781)
.+|||+|++.+.+|.. ..|.+..||.+.++. +|++.|.++||+|+ |+|....... ......
T Consensus 19 ~mmkIl~i~~~~~p~~--~~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~-----~~~~~~ 79 (438)
T 3c48_A 19 SHMRVAMISMHTSPLQ--QPGTGDSGGMNVYIL--------STATELAKQGIEVD----IYTRATRPSQ-----GEIVRV 79 (438)
T ss_dssp CCCEEEEECTTSCTTC--C-------CHHHHHH--------HHHHHHHHTTCEEE----EEEECCCGGG-----CSEEEE
T ss_pred chheeeeEEeeccccc--cCCCCCCCCHHHHHH--------HHHHHHHhcCCEEE----EEecCCCCCC-----cccccc
Confidence 4689999998877531 123346899999999 77777899999999 8886632110 111111
Q ss_pred cCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcEEEE
Q 003985 357 SGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTI 436 (781)
Q Consensus 357 ~~~~~~~I~rvP~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~l~~~pDIIh~~~~~~~lva~llar~~gvp~v~t 436 (781)
..+++++++|.....+ .++..++.++..|...+.+.+... ..+||+||+|++..++++.++++..++|+|++
T Consensus 80 --~~~v~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~ 151 (438)
T 3c48_A 80 --AENLRVINIAAGPYEG-----LSKEELPTQLAAFTGGMLSFTRRE-KVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHT 151 (438)
T ss_dssp --ETTEEEEEECCSCSSS-----CCGGGGGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEE
T ss_pred --cCCeEEEEecCCCccc-----cchhHHHHHHHHHHHHHHHHHHhc-cCCCCEEEeCCccHHHHHHHHHHHcCCCEEEE
Confidence 2368888888754321 223344555555555444442222 22499999998777777888888899999999
Q ss_pred ecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCC
Q 003985 437 AHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDV 516 (781)
Q Consensus 437 ~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~ 516 (781)
.|+............ . ..........+...++.+|.||++|....+.+.+. .|++
T Consensus 152 ~h~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~g~~- 206 (438)
T 3c48_A 152 AHTLAAVKNSYRDDS----D-TPESEARRICEQQLVDNADVLAVNTQEEMQDLMHH-------------------YDAD- 206 (438)
T ss_dssp CSSCHHHHSCC--------C-CHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHH-------------------HCCC-
T ss_pred ecCCccccccccccc----C-CcchHHHHHHHHHHHhcCCEEEEcCHHHHHHHHHH-------------------hCCC-
Confidence 998754321110000 0 00000111235568899999999998876532211 1333
Q ss_pred CCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHH
Q 003985 517 FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGK 596 (781)
Q Consensus 517 f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~ 596 (781)
..++.+||||+|.+.|.+....... ..++.+|+ ++++++|+++||+.+.||++.+++|+.+
T Consensus 207 -~~k~~vi~ngvd~~~~~~~~~~~~~----------------~~r~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~ 267 (438)
T 3c48_A 207 -PDRISVVSPGADVELYSPGNDRATE----------------RSRRELGI--PLHTKVVAFVGRLQPFKGPQVLIKAVAA 267 (438)
T ss_dssp -GGGEEECCCCCCTTTSCCC----CH----------------HHHHHTTC--CSSSEEEEEESCBSGGGCHHHHHHHHHH
T ss_pred -hhheEEecCCccccccCCcccchhh----------------hhHHhcCC--CCCCcEEEEEeeecccCCHHHHHHHHHH
Confidence 5689999999999988775432100 01133666 5678899999999999999999999999
Q ss_pred hhccCC--CeEEEEEeC----cCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEE
Q 003985 597 NSQLRE--LVNLVVVAG----YIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFV 670 (781)
Q Consensus 597 l~~~~~--~~~LvIVG~----g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV 670 (781)
+.+..| +++|+|+|+ |+. .+.++++++++++.++|.|+| .++.+++..+|+. +|++|
T Consensus 268 l~~~~p~~~~~l~i~G~~~~~g~~------------~~~l~~~~~~~~l~~~v~~~g----~~~~~~~~~~~~~-adv~v 330 (438)
T 3c48_A 268 LFDRDPDRNLRVIICGGPSGPNAT------------PDTYRHMAEELGVEKRIRFLD----PRPPSELVAVYRA-ADIVA 330 (438)
T ss_dssp HHHHCTTCSEEEEEECCBC------------------CHHHHHHHHTTCTTTEEEEC----CCCHHHHHHHHHH-CSEEE
T ss_pred HHhhCCCcceEEEEEeCCCCCCcH------------HHHHHHHHHHcCCCCcEEEcC----CCChHHHHHHHHh-CCEEE
Confidence 988766 899999998 433 568899999999999999999 6677899999995 99999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 003985 671 QPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRI 750 (781)
Q Consensus 671 ~PS~~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v 750 (781)
+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++ .|++.++++++++++++
T Consensus 331 ~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~ 406 (438)
T 3c48_A 331 VPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLL----DDDETRIRMGEDAVEHA 406 (438)
T ss_dssp ECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHH
T ss_pred ECccccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887 79999999999999999
Q ss_pred HHhcCcchh--hhccchHHHHHhcCCCCcCC
Q 003985 751 YERLVVSSD--GIVDPSPFVINVISMPTQNH 779 (781)
Q Consensus 751 ~~~ysw~~~--~il~~ye~ll~~~~~~~~~~ 779 (781)
.+ |||+.. .+.+.|+++++.-.+..++|
T Consensus 407 ~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T 3c48_A 407 RT-FSWAATAAQLSSLYNDAIANENVDGETH 436 (438)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHTCCCCSCCC
T ss_pred Hh-CCHHHHHHHHHHHHHHHhhhcccCCCcC
Confidence 77 999876 66667777776554444443
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=3.5e-43 Score=390.95 Aligned_cols=405 Identities=16% Similarity=0.140 Sum_probs=299.6
Q ss_pred ceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCc---------
Q 003985 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT--------- 348 (781)
Q Consensus 278 ~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~--------- 348 (781)
.|||++++++.+| +..||.++++. +|+++|+++||+|+ |+|...+......
T Consensus 2 ~MkIl~v~~~~~p--------~~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~~~~~ 61 (439)
T 3fro_A 2 HMKVLLLGFEFLP--------VKVGGLAEALT--------AISEALASLGHEVL----VFTPSHGRFQGEEIGKIRVFGE 61 (439)
T ss_dssp CCEEEEECSCCTT--------SCSSSHHHHHH--------HHHHHHHHTTCEEE----EEEECTTCSCCEEEEEEEETTE
T ss_pred ceEEEEEecccCC--------cccCCHHHHHH--------HHHHHHHHCCCeEE----EEecCCCCchhhhhccccccCc
Confidence 4899999987763 36899999999 77778899999999 9997654432110
Q ss_pred -cCcceeeecCCCCeEEEEeccCCCcccccccccccCchh--------hHHHHHHHHHHHHHHHc--CCCceEEEEcCCC
Q 003985 349 -CNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWP--------YLETFTEDVGSEITAEL--QGFPDFIIGNYSD 417 (781)
Q Consensus 349 -~~~~~e~v~~~~~~~I~rvP~~~~~~~~~~~isr~~i~~--------yl~~f~~~~~~~i~~~l--~~~pDIIh~~~~~ 417 (781)
....... ....++.++++|. .. ..+..+++ .+..|...+.+.+...+ ..+||+||+|++.
T Consensus 62 ~~~~~~~~-~~~~gv~v~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~ 132 (439)
T 3fro_A 62 EVQVKVSY-EERGNLRIYRIGG-GL-------LDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWH 132 (439)
T ss_dssp EEEEEEEE-EEETTEEEEEEES-GG-------GGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGG
T ss_pred ccceeeee-ccCCCceEEEecc-hh-------ccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchh
Confidence 0000000 0234788998877 21 11222222 12224444444444331 5689999999988
Q ss_pred chHHHHHHHHHcCCcEEEEecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccc
Q 003985 418 GNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYE 497 (781)
Q Consensus 418 ~~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~ 497 (781)
.++++.++++..++|+|++.|+.....++........+... .+......+..+++.||.|+++|....+. ..+.
T Consensus 133 ~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ad~ii~~S~~~~~~---~~~~-- 206 (439)
T 3fro_A 133 TVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSEL-APYPDIDPEHTGGYIADIVTTVSRGYLID---EWGF-- 206 (439)
T ss_dssp GHHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGGG-CCSSEECHHHHHHHHCSEEEESCHHHHHH---THHH--
T ss_pred hhhhHHHHhhccCCCEEEEecccccccCchHHhCccccccc-cccceeeHhhhhhhhccEEEecCHHHHHH---Hhhh--
Confidence 88888999999999999999998654332111111111100 01112245667899999999999977652 1110
Q ss_pred cccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCc----HHHHHHhhhhcchhhhccCccccccccCCCCCCCCC
Q 003985 498 SHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYS----EKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKP 573 (781)
Q Consensus 498 s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~----~~~~rl~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~ 573 (781)
++....++.+||||+|.+.|.|.. ....+ ...++.+|+ +++ +
T Consensus 207 ----------------~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~---------------~~~~~~~~~--~~~-~ 252 (439)
T 3fro_A 207 ----------------FRNFEGKITYVFNGIDCSFWNESYLTGSRDERK---------------KSLLSKFGM--DEG-V 252 (439)
T ss_dssp ----------------HGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHH---------------HHHHHHHTC--CSC-E
T ss_pred ----------------hhhcCCceeecCCCCCchhcCcccccchhhhhH---------------HHHHHHcCC--CCC-c
Confidence 012277999999999999988752 11111 011244676 445 9
Q ss_pred EEEEEeecc-CCCChHHHHHHHHHhhccC--CCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecccc
Q 003985 574 IVFSMARLD-HVKNMTGLVECYGKNSQLR--ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQT 650 (781)
Q Consensus 574 iIl~vGRL~-~~Kgl~~LieA~~~l~~~~--~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~ 650 (781)
+|+++||+. +.||++.+++|++++.+.. ++++|+|+|+|+. .+.+.+++++++++ +.+.|.|
T Consensus 253 ~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~----------~~~~~l~~~~~~~~--~~~~~~g--- 317 (439)
T 3fro_A 253 TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP----------ELEGWARSLEEKHG--NVKVITE--- 317 (439)
T ss_dssp EEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH----------HHHHHHHHHHHHCT--TEEEECS---
T ss_pred EEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCCh----------hHHHHHHHHHhhcC--CEEEEcC---
Confidence 999999999 9999999999999998876 8999999999975 44588999999988 7788898
Q ss_pred CcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003985 651 NRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 651 ~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~ 730 (781)
.++.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++
T Consensus 318 -~~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll- 393 (439)
T 3fro_A 318 -MLSREFVRELYGS-VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKAL- 393 (439)
T ss_dssp -CCCHHHHHHHHTT-CSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHH-
T ss_pred -CCCHHHHHHHHHH-CCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHH-
Confidence 6778999999995 999999999999999999999999999999999999999887 999999999999999999887
Q ss_pred hccC-CHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhcCCCC
Q 003985 731 KCKE-NPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVISMPT 776 (781)
Q Consensus 731 ~l~~-dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~~~~~~~ 776 (781)
. |++.++++++++++.+ ++|||+. +++.|.+++..+....
T Consensus 394 ---~~~~~~~~~~~~~~~~~~-~~~s~~~--~~~~~~~~~~~~~~~~ 434 (439)
T 3fro_A 394 ---ELSRSDLSKFRENCKKRA-MSFSWEK--SAERYVKAYTGSIDRA 434 (439)
T ss_dssp ---HHTTTTTHHHHHHHHHHH-HTSCHHH--HHHHHHHHHHTCSCCB
T ss_pred ---hcCHHHHHHHHHHHHHHH-hhCcHHH--HHHHHHHHHHHHHHhh
Confidence 5 8999999999999999 7899955 6677888887664443
No 5
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=4.1e-40 Score=361.39 Aligned_cols=368 Identities=15% Similarity=0.217 Sum_probs=281.1
Q ss_pred CceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCccCcceeee
Q 003985 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV 356 (781)
Q Consensus 277 ~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~~~~~~e~v 356 (781)
++|||++++++.. |..||.+.++. .|++.| +||+|+ |+|...+... ....
T Consensus 3 ~~mkIl~v~~~~~---------p~~gG~~~~~~--------~l~~~L--~g~~v~----v~~~~~~~~~-------~~~~ 52 (394)
T 3okp_A 3 ASRKTLVVTNDFP---------PRIGGIQSYLR--------DFIATQ--DPESIV----VFASTQNAEE-------AHAY 52 (394)
T ss_dssp -CCCEEEEESCCT---------TSCSHHHHHHH--------HHHTTS--CGGGEE----EEEECSSHHH-------HHHH
T ss_pred CCceEEEEeCccC---------CccchHHHHHH--------HHHHHh--cCCeEE----EEECCCCccc-------hhhh
Confidence 3589999997654 56899999999 666667 699999 8887643210 0111
Q ss_pred cCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCc-EEE
Q 003985 357 SGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGIT-QCT 435 (781)
Q Consensus 357 ~~~~~~~I~rvP~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~l~~~pDIIh~~~~~~~lva~llar~~gvp-~v~ 435 (781)
....++.++++|..... ..+ .+...+.+.+.+. +||+||+|..........++++.++| +++
T Consensus 53 ~~~~~~~~~~~~~~~~~----------~~~----~~~~~l~~~~~~~---~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~ 115 (394)
T 3okp_A 53 DKTLDYEVIRWPRSVML----------PTP----TTAHAMAEIIRER---EIDNVWFGAAAPLALMAGTAKQAGASKVIA 115 (394)
T ss_dssp HTTCSSEEEEESSSSCC----------SCH----HHHHHHHHHHHHT---TCSEEEESSCTTGGGGHHHHHHTTCSEEEE
T ss_pred ccccceEEEEccccccc----------cch----hhHHHHHHHHHhc---CCCEEEECCcchHHHHHHHHHhcCCCcEEE
Confidence 22346788888775421 111 2223344444443 89999999877654455557778887 778
Q ss_pred EecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCC
Q 003985 436 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 515 (781)
Q Consensus 436 t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~ 515 (781)
+.|+... .|... ..+ .......++.+|.|+++|....+...+. .+
T Consensus 116 ~~h~~~~--------~~~~~-~~~-----~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~~-- 160 (394)
T 3okp_A 116 STHGHEV--------GWSML-PGS-----RQSLRKIGTEVDVLTYISQYTLRRFKSA-------------------FG-- 160 (394)
T ss_dssp ECCSTHH--------HHTTS-HHH-----HHHHHHHHHHCSEEEESCHHHHHHHHHH-------------------HC--
T ss_pred Eeccchh--------hhhhc-chh-----hHHHHHHHHhCCEEEEcCHHHHHHHHHh-------------------cC--
Confidence 9997532 11100 011 1123457889999999999876532221 11
Q ss_pred CCCCceEEecCCCcCCCCCCCcHHH-HHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHH
Q 003985 516 VFDPKFNIVSPGADMDIYFPYSEKQ-KRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECY 594 (781)
Q Consensus 516 ~f~~k~~VIpnGvD~~~f~p~~~~~-~rl~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~ 594 (781)
...++.+||||+|.+.|.+..... ... ++.+|+ ++++++|+++||+.+.||++.+++|+
T Consensus 161 -~~~~~~vi~ngv~~~~~~~~~~~~~~~~-----------------~~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~ 220 (394)
T 3okp_A 161 -SHPTFEHLPSGVDVKRFTPATPEDKSAT-----------------RKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAM 220 (394)
T ss_dssp -SSSEEEECCCCBCTTTSCCCCHHHHHHH-----------------HHHTTC--CTTCCEEEEESCSCGGGCHHHHHHHH
T ss_pred -CCCCeEEecCCcCHHHcCCCCchhhHHH-----------------HHhcCC--CcCceEEEEEeccccccCHHHHHHHH
Confidence 156999999999999998844332 221 234666 56779999999999999999999999
Q ss_pred HHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCC
Q 003985 595 GKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF 674 (781)
Q Consensus 595 ~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~ 674 (781)
.++.+..++++|+|+|+|+. .+.+++++ .++.++|.|+| .++.+++..+++. +|++|+||.
T Consensus 221 ~~l~~~~~~~~l~i~G~g~~------------~~~l~~~~--~~~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~ps~ 281 (394)
T 3okp_A 221 PQVIAARPDAQLLIVGSGRY------------ESTLRRLA--TDVSQNVKFLG----RLEYQDMINTLAA-ADIFAMPAR 281 (394)
T ss_dssp HHHHHHSTTCEEEEECCCTT------------HHHHHHHT--GGGGGGEEEEE----SCCHHHHHHHHHH-CSEEEECCC
T ss_pred HHHHhhCCCeEEEEEcCchH------------HHHHHHHH--hcccCeEEEcC----CCCHHHHHHHHHh-CCEEEecCc
Confidence 99988889999999999976 56777777 56778999999 6778999999995 999999999
Q ss_pred C-------CCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003985 675 Y-------EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGL 747 (781)
Q Consensus 675 ~-------E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~ 747 (781)
+ |+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++ .|++.+++++++++
T Consensus 282 ~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~ 356 (394)
T 3okp_A 282 TRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELL----DDPIRRAAMGAAGR 356 (394)
T ss_dssp CBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHH----TCHHHHHHHHHHHH
T ss_pred cccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHH----hCHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999 999999999999999998887 89999999999999
Q ss_pred HHHHHhcCcchhhhccchHHHHHhc
Q 003985 748 KRIYERLVVSSDGIVDPSPFVINVI 772 (781)
Q Consensus 748 ~~v~~~ysw~~~~il~~ye~ll~~~ 772 (781)
+.+.++|||+. +++.|.+++...
T Consensus 357 ~~~~~~~s~~~--~~~~~~~~~~~~ 379 (394)
T 3okp_A 357 AHVEAEWSWEI--MGERLTNILQSE 379 (394)
T ss_dssp HHHHHHTBHHH--HHHHHHHHHHSC
T ss_pred HHHHHhCCHHH--HHHHHHHHHHHh
Confidence 99999999965 567778877755
No 6
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=5.1e-40 Score=380.71 Aligned_cols=328 Identities=16% Similarity=0.161 Sum_probs=230.9
Q ss_pred CCceEEEEcCCCchHHHHHHHHHc-------CCcEEEEecCCccccCC-CChh--------hHhhhh--c---cccchhh
Q 003985 406 GFPDFIIGNYSDGNLVASLLAYKM-------GITQCTIAHALEKTKYP-DSDI--------YWKKFD--E---KYHFSCQ 464 (781)
Q Consensus 406 ~~pDIIh~~~~~~~lva~llar~~-------gvp~v~t~H~l~~~k~~-~s~~--------~~k~~~--~---~y~f~~~ 464 (781)
+.+||+|+|.|.+++++.+++... ++|+|+|+|++...... .... .+.... . ...+...
T Consensus 152 ~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (536)
T 3vue_A 152 GEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRK 231 (536)
T ss_dssp CSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEE
T ss_pred CCCEEEEECcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccc
Confidence 457899999999988888887654 69999999997543211 0000 000000 0 0011122
Q ss_pred hhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHh
Q 003985 465 FTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLT 544 (781)
Q Consensus 465 ~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~ 544 (781)
+...+..+..||.|+|+|+..++.+....+.- ..+.. ..-..++.+|+||+|.+.|.|.++......
T Consensus 232 ~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g-----~~l~~--------~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~ 298 (536)
T 3vue_A 232 INWMKAGILEADRVLTVSPYYAEELISGIARG-----CELDN--------IMRLTGITGIVNGMDVSEWDPSKDKYITAK 298 (536)
T ss_dssp EEHHHHHHHHCSEEEESCHHHHHHHHTTCCCC-----SSSCC--------CSCCCSCEECCCCCCTTTSCTTTCSSSSCC
T ss_pred hhHHHHHHHhccEEEEcCHHHhhhhhcccccc-----ccccc--------ccccCCeEEEECCcchhhcCCCCccccccc
Confidence 33466788999999999998766433221100 00010 011568999999999999988542100000
Q ss_pred hh-hcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHH
Q 003985 545 AL-HGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREE 623 (781)
Q Consensus 545 ~~-~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee 623 (781)
.. ...++....++....+.+|+..+++.|+|+++||+.+.||++.|++|+.++.+ .+.+|+|+|.|..
T Consensus 299 ~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~--~~~~l~l~G~G~~--------- 367 (536)
T 3vue_A 299 YDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ--EDVQIVLLGTGKK--------- 367 (536)
T ss_dssp CCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT--SSCEEEEECCBCH---------
T ss_pred cchhhhhhhhHHHHHHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHh--hCCeEEEEeccCc---------
Confidence 00 00000000011122345788778899999999999999999999999999976 4689999999865
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccc
Q 003985 624 IAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEI 703 (781)
Q Consensus 624 ~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG~~Ei 703 (781)
.....++..+..+ .++|.+.+ ..+.+++..+++. +|+||+||++|+||++++|||+||+|||+|++||++|+
T Consensus 368 -~~~~~~~~~~~~~--~~~v~~~~----~~~~~~~~~~~~~-aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~ 439 (536)
T 3vue_A 368 -KFEKLLKSMEEKY--PGKVRAVV----KFNAPLAHLIMAG-ADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDT 439 (536)
T ss_dssp -HHHHHHHHHHHHS--TTTEEEEC----SCCHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHH
T ss_pred -hHHHHHHHHHhhc--CCceEEEE----eccHHHHHHHHHh-hheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchhe
Confidence 3345556666555 46899998 5677888888985 99999999999999999999999999999999999999
Q ss_pred cccCCeEE----------EECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhc
Q 003985 704 IEHGASGF----------HIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVI 772 (781)
Q Consensus 704 I~dg~~G~----------lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~~~ 772 (781)
|.||++|+ +++|.|+++++++|.++++ +..++ .|+++.++|. .++|||++ +++.|++++..+
T Consensus 440 V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~-~~~~~-~~~~~~~~am---~~~fSW~~--~A~~y~~ly~~L 511 (536)
T 3vue_A 440 VIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIK-VVGTP-AYEEMVRNCM---NQDLSWKG--PAKNWENVLLGL 511 (536)
T ss_dssp CCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHH-HTTSH-HHHHHHHHHH---HSCCSSHH--HHHHHHHHHHTT
T ss_pred eeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHH-hcCcH-HHHHHHHHHH---HhcCCHHH--HHHHHHHHHHHh
Confidence 99999999 6788899999999998874 33444 5778877664 46899966 557788888765
No 7
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=2.6e-39 Score=357.55 Aligned_cols=360 Identities=18% Similarity=0.262 Sum_probs=263.0
Q ss_pred CCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCccCcceeeecCCCCeEEEEeccCCCcccccc
Q 003985 299 PDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQ 378 (781)
Q Consensus 299 p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~~~~~~e~v~~~~~~~I~rvP~~~~~~~~~~ 378 (781)
|..||.+.++. +|++.|+++||+|+ |+|...+.... ...+++.+..++.....
T Consensus 24 p~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~----------~~~~~i~~~~~~~~~~~----- 76 (394)
T 2jjm_A 24 PSVGGSGVVGT--------ELGKQLAERGHEIH----FITSGLPFRLN----------KVYPNIYFHEVTVNQYS----- 76 (394)
T ss_dssp C--CHHHHHHH--------HHHHHHHHTTCEEE----EECSSCC--------------CCCTTEEEECCCCC--------
T ss_pred CCCCCHHHHHH--------HHHHHHHhCCCEEE----EEeCCCCCccc----------ccCCceEEEeccccccc-----
Confidence 56899999999 77777899999999 99875332110 11234556555443211
Q ss_pred cccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchH-HHHHHHHHc--CCcEEEEecCCccccCCCChhhHhhh
Q 003985 379 WISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNL-VASLLAYKM--GITQCTIAHALEKTKYPDSDIYWKKF 455 (781)
Q Consensus 379 ~isr~~i~~yl~~f~~~~~~~i~~~l~~~pDIIh~~~~~~~l-va~llar~~--gvp~v~t~H~l~~~k~~~s~~~~k~~ 455 (781)
.+...++...+...+.+.+.+. +||+||+|+..+.. .+.++++.. ++|+|++.|+.........
T Consensus 77 ---~~~~~~~~~~~~~~l~~~l~~~---~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~------- 143 (394)
T 2jjm_A 77 ---VFQYPPYDLALASKMAEVAQRE---NLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGSD------- 143 (394)
T ss_dssp ----CCSCCHHHHHHHHHHHHHHHH---TCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTTC-------
T ss_pred ---ccccccccHHHHHHHHHHHHHc---CCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccccCCC-------
Confidence 0111112223333444555544 89999999876543 444444444 5999999997532111100
Q ss_pred hccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCC
Q 003985 456 DEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFP 535 (781)
Q Consensus 456 ~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p 535 (781)
..+. ......++.+|.||++|....+.+.+. .+. ..++.+||||+|.+.|.+
T Consensus 144 -~~~~-----~~~~~~~~~ad~ii~~s~~~~~~~~~~-------------------~~~---~~~~~vi~ngv~~~~~~~ 195 (394)
T 2jjm_A 144 -PSLN-----NLIRFGIEQSDVVTAVSHSLINETHEL-------------------VKP---NKDIQTVYNFIDERVYFK 195 (394)
T ss_dssp -TTTH-----HHHHHHHHHSSEEEESCHHHHHHHHHH-------------------TCC---SSCEEECCCCCCTTTCCC
T ss_pred -HHHH-----HHHHHHHhhCCEEEECCHHHHHHHHHh-------------------hCC---cccEEEecCCccHHhcCC
Confidence 0111 124467889999999998876532211 011 468999999999998877
Q ss_pred CcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCC
Q 003985 536 YSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDV 615 (781)
Q Consensus 536 ~~~~~~rl~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~ 615 (781)
......+ +.+|+ ++++++|+++||+.+.||++.+++|++++.+. ++++|+|+|+|+.
T Consensus 196 ~~~~~~~-------------------~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~- 252 (394)
T 2jjm_A 196 RDMTQLK-------------------KEYGI--SESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPE- 252 (394)
T ss_dssp CCCHHHH-------------------HHTTC--C---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEECCCTT-
T ss_pred cchHHHH-------------------HHcCC--CCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCEEEEECCchH-
Confidence 5432221 23555 46778999999999999999999999999766 5699999999976
Q ss_pred CCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc
Q 003985 616 NKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT 695 (781)
Q Consensus 616 ~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT 695 (781)
.+.++++++++++.++|.|+|. .+++..+++. +|++|+||.+|+||++++|||+||+|||+|
T Consensus 253 -----------~~~l~~~~~~~~l~~~v~~~g~------~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~PvI~~ 314 (394)
T 2jjm_A 253 -----------FCTILQLVKNLHIEDRVLFLGK------QDNVAELLAM-SDLMLLLSEKESFGLVLLEAMACGVPCIGT 314 (394)
T ss_dssp -----------HHHHHHHHHTTTCGGGBCCCBS------CSCTHHHHHT-CSEEEECCSCCSCCHHHHHHHHTTCCEEEE
T ss_pred -----------HHHHHHHHHHcCCCCeEEEeCc------hhhHHHHHHh-CCEEEeccccCCCchHHHHHHhcCCCEEEe
Confidence 6788999999999999999994 2457888885 999999999999999999999999999999
Q ss_pred CccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhcC
Q 003985 696 CHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVIS 773 (781)
Q Consensus 696 ~~GG~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~~~~ 773 (781)
+.||..|++.++.+|++++++|+++++++|.+++ .|++.++++++++++++.++|||+. +++.|.+++..+.
T Consensus 315 ~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~ 386 (394)
T 2jjm_A 315 RVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLL----KDEELHRNMGERARESVYEQFRSEK--IVSQYETIYYDVL 386 (394)
T ss_dssp CCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHTC
T ss_pred cCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887 7999999999999999999999966 4566777766544
No 8
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=8.1e-40 Score=371.83 Aligned_cols=433 Identities=15% Similarity=0.159 Sum_probs=278.2
Q ss_pred eEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCccCc-------
Q 003985 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQ------- 351 (781)
Q Consensus 279 ~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~~~~------- 351 (781)
|||++++.+.+|. +..||.+.++. +|+++|+++||+|+ |+|...+.... .+..
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~-~~~~~~~~~~~ 60 (485)
T 1rzu_A 1 MNVLSVSSEIYPL-------IKTGGLADVVG--------ALPIALEAHGVRTR----TLIPGYPAVKA-AVTDPVKCFEF 60 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCHHHHH-HCCSCEEEEEE
T ss_pred CeEEEEeeeeccc-------cccccHHHHHH--------HHHHHHHHcCCeEE----EEecccccccc-cccccceeEEE
Confidence 7999999876631 24799999999 77778899999999 99865322100 0000
Q ss_pred ------ceeee-cCCCCeEEEEeccCCC---c-cccc-----ccccccCchhhHHHHHHHHHHHHHHH-cCCCceEEEEc
Q 003985 352 ------RLERV-SGTEHTHILRVPFRSE---K-GILR-----QWISRFDVWPYLETFTEDVGSEITAE-LQGFPDFIIGN 414 (781)
Q Consensus 352 ------~~e~v-~~~~~~~I~rvP~~~~---~-~~~~-----~~isr~~i~~yl~~f~~~~~~~i~~~-l~~~pDIIh~~ 414 (781)
..... ....++.+++++.... . +... .|. .....+..+...+.+.+... ...+|||||+|
T Consensus 61 ~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~ 137 (485)
T 1rzu_A 61 TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYP---DNWKRFAALSLAAARIGAGVLPGWRPDMVHAH 137 (485)
T ss_dssp SCSSSCCEEEEEEEETTEEEEEEECHHHHCSSSCSSBCTTSSBCT---THHHHHHHHHHHHHHHHTTCSSSCCCSEEEEE
T ss_pred EEecCCeEEEEEEEecCceEEEEeChHHhCCCccccCCccccccc---chHHHHHHHHHHHHHHHHHhccCCCCCEEEec
Confidence 00000 0124688888764310 0 0000 000 00001112222233322221 14689999999
Q ss_pred CCCchHHHHHHHHH--cCCcEEEEecCCccccC-CCChh-----hHhhhh-ccccchhhhhHHHHHHhhCCEEEecCHHH
Q 003985 415 YSDGNLVASLLAYK--MGITQCTIAHALEKTKY-PDSDI-----YWKKFD-EKYHFSCQFTADLIAMNNADFIITSTYQE 485 (781)
Q Consensus 415 ~~~~~lva~llar~--~gvp~v~t~H~l~~~k~-~~s~~-----~~k~~~-~~y~f~~~~~~e~~a~~~AD~IIt~S~~~ 485 (781)
.+..++++.++++. .++|+|++.|+...... ....+ .+..+. ....+......+..+++.||.||++|...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 217 (485)
T 1rzu_A 138 DWQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSY 217 (485)
T ss_dssp HHHHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHH
T ss_pred ccchhHHHHHHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhH
Confidence 87666677777765 89999999999754221 10000 000000 00011111234567889999999999987
Q ss_pred HhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccC
Q 003985 486 IAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVG 565 (781)
Q Consensus 486 ~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~~~g 565 (781)
.+.+.+.. | .+.++.+ +.....++.+||||+|.+.|.|...............+.........++.+|
T Consensus 218 ~~~~~~~~--~----g~~~~~~------~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 285 (485)
T 1rzu_A 218 AEEILTAE--F----GMGLEGV------IGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFR 285 (485)
T ss_dssp HHHTTSHH--H----HTTCHHH------HHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHT
T ss_pred HHHHhccc--c----CcchHHH------HHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcC
Confidence 65322110 0 0000000 0012568999999999998877542100000000000000000001123466
Q ss_pred CCCCC-CCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEE
Q 003985 566 TLSDR-SKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR 644 (781)
Q Consensus 566 ~l~~~-~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~ 644 (781)
+ ++ ++++|+++||+.+.||++.|++|++++.+ ++++|+|+|+|+. .+.+.+++++++++ ++|.
T Consensus 286 ~--~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~--~~v~ 349 (485)
T 1rzu_A 286 I--DDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDV----------ALEGALLAAASRHH--GRVG 349 (485)
T ss_dssp C--CCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCH----------HHHHHHHHHHHHTT--TTEE
T ss_pred C--CCCCCeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCCch----------HHHHHHHHHHHhCC--CcEE
Confidence 6 33 26799999999999999999999999976 4899999999864 34678888898885 6787
Q ss_pred -EeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC---------CeEEEEC
Q 003985 645 -WIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHG---------ASGFHID 714 (781)
Q Consensus 645 -flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg---------~~G~lv~ 714 (781)
|.|+ +.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|++++
T Consensus 350 ~~~g~-----~~~~~~~~~~~-adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~ 423 (485)
T 1rzu_A 350 VAIGY-----NEPLSHLMQAG-CDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFS 423 (485)
T ss_dssp EEESC-----CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEES
T ss_pred EecCC-----CHHHHHHHHhc-CCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeC
Confidence 7873 45677899995 999999999999999999999999999999999999999998 8999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhcCC
Q 003985 715 PYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVISM 774 (781)
Q Consensus 715 p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~~~~~ 774 (781)
++|+++++++|.+++. +..|++.++++++++++ ++|||+. +++.|.+++..+..
T Consensus 424 ~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~--~~~~~~~~y~~~~~ 477 (485)
T 1rzu_A 424 PVTLDGLKQAIRRTVR-YYHDPKLWTQMQKLGMK---SDVSWEK--SAGLYAALYSQLIS 477 (485)
T ss_dssp SCSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHT---CCCBHHH--HHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH---HhCChHH--HHHHHHHHHHHhhC
Confidence 9999999999987762 22689999999999874 7899966 45666666665443
No 9
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.7e-39 Score=369.22 Aligned_cols=430 Identities=15% Similarity=0.130 Sum_probs=278.9
Q ss_pred eEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCc----------
Q 003985 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT---------- 348 (781)
Q Consensus 279 ~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~---------- 348 (781)
|||++++.+.+|. +..||.+.++. +|+++|+++||+|+ |+|...+......
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~~~~~~~~~~~~~ 61 (485)
T 2qzs_A 1 MQVLHVCSEMFPL-------LKTGGLADVIG--------ALPAAQIADGVDAR----VLLPAFPDIRRGVTDAQVVSRRD 61 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCHHHHHHCTTCEEEEEEC
T ss_pred CeEEEEeeecccc-------ccCCcHHHHHH--------HHHHHHHHcCCEEE----EEecCccccccccccceeEEEec
Confidence 7999999766531 24799999999 77778899999999 9986532110000
Q ss_pred -cCcceeee-cCCCCeEEEEeccCC---Ccc-ccc-----ccccccCchhhHHHHHHHHHHHHHHHc-CCCceEEEEcCC
Q 003985 349 -CNQRLERV-SGTEHTHILRVPFRS---EKG-ILR-----QWISRFDVWPYLETFTEDVGSEITAEL-QGFPDFIIGNYS 416 (781)
Q Consensus 349 -~~~~~e~v-~~~~~~~I~rvP~~~---~~~-~~~-----~~isr~~i~~yl~~f~~~~~~~i~~~l-~~~pDIIh~~~~ 416 (781)
.....+.. ....++.+++++... ..+ ... .|. ..+..+..+...+.+.+.... ..+|||||+|.+
T Consensus 62 ~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~ 138 (485)
T 2qzs_A 62 TFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYT---DNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDW 138 (485)
T ss_dssp CTTCCEEEEEEEETTEEEEEEECHHHHCCSSCSSBCTTSCBCT---THHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETG
T ss_pred ccCCcEEEEEEEECCcEEEEEeChhhccCCCCccCCcccCCCC---chHHHHHHHHHHHHHHHHHhccCCCCCEEEeecc
Confidence 00000000 012468888876421 000 000 000 000011122222222222111 158999999997
Q ss_pred CchHHHHHHH-HHcCCcEEEEecCCccccCCCCh-h-----hHhhhh-ccccchhhhhHHHHHHhhCCEEEecCHHHHhh
Q 003985 417 DGNLVASLLA-YKMGITQCTIAHALEKTKYPDSD-I-----YWKKFD-EKYHFSCQFTADLIAMNNADFIITSTYQEIAG 488 (781)
Q Consensus 417 ~~~lva~lla-r~~gvp~v~t~H~l~~~k~~~s~-~-----~~k~~~-~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~ 488 (781)
..++++.+++ +..++|+|+|.|+.......... + ....+. ....+......+..+++.+|.||++|....+.
T Consensus 139 ~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~ 218 (485)
T 2qzs_A 139 HAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYARE 218 (485)
T ss_dssp GGTTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHH
T ss_pred chhHHHHHHhhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHH
Confidence 7777777777 67899999999997532210000 0 000000 00001111234567889999999999987653
Q ss_pred ccccccccccccccccccceeeeccCCC------CC--CceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCcccc
Q 003985 489 TKNTVGQYESHTAFTLPGLYRVVHGIDV------FD--PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQN 560 (781)
Q Consensus 489 ~k~~v~qy~s~~~f~lp~ly~v~~gi~~------f~--~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~ 560 (781)
+.+. ..|++. .. .++.+||||+|.+.|.|.........-.....+.........
T Consensus 219 ~~~~------------------~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (485)
T 2qzs_A 219 ITEP------------------QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQL 280 (485)
T ss_dssp TTSH------------------HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHH
T ss_pred Hhcc------------------ccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHH
Confidence 2211 002110 12 689999999999988775321000000000000000000011
Q ss_pred ccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCC
Q 003985 561 DEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLD 640 (781)
Q Consensus 561 ~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~ 640 (781)
++++|+..++++++|+++||+.+.||++.+++|++++.+ ++++|+|+|+|+. .+.+.+++++++++
T Consensus 281 r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~-- 346 (485)
T 2qzs_A 281 QIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDP----------VLQEGFLAAAAEYP-- 346 (485)
T ss_dssp HHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECH----------HHHHHHHHHHHHST--
T ss_pred HHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCCch----------HHHHHHHHHHHhCC--
Confidence 244676333478999999999999999999999999976 4899999999864 34678888898885
Q ss_pred CcEE-EeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC---------CeE
Q 003985 641 GQFR-WIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHG---------ASG 710 (781)
Q Consensus 641 ~~V~-flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg---------~~G 710 (781)
++|. |.|+ +.+++..+|+. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|
T Consensus 347 ~~v~~~~g~-----~~~~~~~~~~~-adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G 420 (485)
T 2qzs_A 347 GQVGVQIGY-----HEAFSHRIMGG-ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASG 420 (485)
T ss_dssp TTEEEEESC-----CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCB
T ss_pred CcEEEeCCC-----CHHHHHHHHHh-CCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccce
Confidence 6786 7873 45677899995 999999999999999999999999999999999999999998 899
Q ss_pred EEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhcCC
Q 003985 711 FHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVISM 774 (781)
Q Consensus 711 ~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~~~~~ 774 (781)
++++++|+++++++|.+++. +..|++.++++++++++ ++|||+. +++.|.+++..+..
T Consensus 421 ~l~~~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~--~~~~~~~ly~~~~~ 478 (485)
T 2qzs_A 421 FVFEDSNAWSLLRAIRRAFV-LWSRPSLWRFVQRQAMA---MDFSWQV--AAKSYRELYYRLKL 478 (485)
T ss_dssp EEECSSSHHHHHHHHHHHHH-HHTSHHHHHHHHHHHHH---CCCCHHH--HHHHHHHHHHHHC-
T ss_pred EEECCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh---hcCCHHH--HHHHHHHHHHHhhh
Confidence 99999999999999987762 22589999999999874 7899966 45667777665443
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=2.8e-39 Score=352.68 Aligned_cols=366 Identities=15% Similarity=0.206 Sum_probs=258.3
Q ss_pred eEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCccCcceeeecC
Q 003985 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (781)
Q Consensus 279 ~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~~~~~~e~v~~ 358 (781)
|||++++++.. | .||.+.++. +|++.|+++||+|+ |+|.......
T Consensus 1 MkIl~i~~~~~---------~-~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~------------- 45 (374)
T 2iw1_A 1 MIVAFCLYKYF---------P-FGGLQRDFM--------RIASTVAARGHHVR----VYTQSWEGDC------------- 45 (374)
T ss_dssp -CEEEECSEEC---------T-TCHHHHHHH--------HHHHHHHHTTCCEE----EEESEECSCC-------------
T ss_pred CeEEEEEeecC---------C-CcchhhHHH--------HHHHHHHhCCCeEE----EEecCCCCCC-------------
Confidence 79999997644 2 589999999 77778899999999 9987632210
Q ss_pred CCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcEEEEec
Q 003985 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAH 438 (781)
Q Consensus 359 ~~~~~I~rvP~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~l~~~pDIIh~~~~~~~lva~llar~~gvp~v~t~H 438 (781)
.+++++.++|...... ......+...+.+.+.+ .+||+||+|....+..+...++..+++.+.+.|
T Consensus 46 ~~~~~v~~~~~~~~~~-----------~~~~~~~~~~l~~~i~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (374)
T 2iw1_A 46 PKAFELIQVPVKSHTN-----------HGRNAEYYAWVQNHLKE---HPADRVVGFNKMPGLDVYFAADVCYAEKVAQEK 111 (374)
T ss_dssp CTTCEEEECCCCCSSH-----------HHHHHHHHHHHHHHHHH---SCCSEEEESSCCTTCSEEECCSCCHHHHHHHHC
T ss_pred CCCcEEEEEccCcccc-----------hhhHHHHHHHHHHHHhc---cCCCEEEEecCCCCceeeeccccccceeeeecc
Confidence 1257888887654211 11122333334444443 389999998865432111111111122222223
Q ss_pred CCccccCCCChhhHhhhhccccchhhhhHHHHHHh--hCCEEEecCHHHHhhccccccccccccccccccceeeeccCCC
Q 003985 439 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMN--NADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDV 516 (781)
Q Consensus 439 ~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~--~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~ 516 (781)
+... .....+.+.. ..+...+. .+|.|+++|....+...+. .|++
T Consensus 112 ~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~~~~- 158 (374)
T 2iw1_A 112 GFLY-----------RLTSRYRHYA--AFERATFEQGKSTKLMMLTDKQIADFQKH-------------------YQTE- 158 (374)
T ss_dssp CHHH-----------HTSHHHHHHH--HHHHHHHSTTCCCEEEESCHHHHHHHHHH-------------------HCCC-
T ss_pred cchh-----------hhcHHHHHHH--HHHHHHhhccCCcEEEEcCHHHHHHHHHH-------------------hCCC-
Confidence 2100 0001111111 12333343 6999999998876532211 1332
Q ss_pred CCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHH
Q 003985 517 FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGK 596 (781)
Q Consensus 517 f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~ 596 (781)
..++.+||||+|.+.|.+......+. ..++.+|+ ++++++|+++||+.+.||++.+++|+..
T Consensus 159 -~~~~~vi~ngv~~~~~~~~~~~~~~~---------------~~~~~~~~--~~~~~~i~~~G~~~~~K~~~~li~a~~~ 220 (374)
T 2iw1_A 159 -PERFQILPPGIYPDRKYSEQIPNSRE---------------IYRQKNGI--KEQQNLLLQVGSDFGRKGVDRSIEALAS 220 (374)
T ss_dssp -GGGEEECCCCCCGGGSGGGSCTTHHH---------------HHHHHTTC--CTTCEEEEEECSCTTTTTHHHHHHHHHT
T ss_pred -hhheEEecCCcCHHhcCcccchhHHH---------------HHHHHhCC--CCCCeEEEEeccchhhcCHHHHHHHHHH
Confidence 56899999999998886643211110 01234666 5678899999999999999999999999
Q ss_pred hhcc-CCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCC
Q 003985 597 NSQL-RELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFY 675 (781)
Q Consensus 597 l~~~-~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~ 675 (781)
+.+. .++++|+|+|+|+. +.++++++++++.++|.|+|++ +++..+++. +|++|+||.+
T Consensus 221 l~~~~~~~~~l~i~G~g~~-------------~~~~~~~~~~~~~~~v~~~g~~------~~~~~~~~~-ad~~v~ps~~ 280 (374)
T 2iw1_A 221 LPESLRHNTLLFVVGQDKP-------------RKFEALAEKLGVRSNVHFFSGR------NDVSELMAA-ADLLLHPAYQ 280 (374)
T ss_dssp SCHHHHHTEEEEEESSSCC-------------HHHHHHHHHHTCGGGEEEESCC------SCHHHHHHH-CSEEEECCSC
T ss_pred hHhccCCceEEEEEcCCCH-------------HHHHHHHHHcCCCCcEEECCCc------ccHHHHHHh-cCEEEecccc
Confidence 8765 57899999999854 4678889999999999999952 468888885 9999999999
Q ss_pred CCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEEC-CCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc
Q 003985 676 EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHID-PYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERL 754 (781)
Q Consensus 676 E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~G~lv~-p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~y 754 (781)
|+||++++|||+||+|||+|+.||..|++.++.+|++++ |+|+++++++|.+++ +|++.++++++++++.+. +|
T Consensus 281 e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~~-~~ 355 (374)
T 2iw1_A 281 EAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKAL----TQSPLRMAWAENARHYAD-TQ 355 (374)
T ss_dssp CSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHH-HS
T ss_pred CCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHH----cChHHHHHHHHHHHHHHH-Hh
Confidence 999999999999999999999999999999999999998 999999999998887 799999999999999995 67
Q ss_pred CcchhhhccchHHHHHh
Q 003985 755 VVSSDGIVDPSPFVINV 771 (781)
Q Consensus 755 sw~~~~il~~ye~ll~~ 771 (781)
+|.. +.+.+.+++..
T Consensus 356 ~~~~--~~~~~~~~l~~ 370 (374)
T 2iw1_A 356 DLYS--LPEKAADIITG 370 (374)
T ss_dssp CCSC--HHHHHHHHHHC
T ss_pred hHHH--HHHHHHHHHHH
Confidence 9955 45566666643
No 11
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=7e-38 Score=348.56 Aligned_cols=372 Identities=16% Similarity=0.176 Sum_probs=259.0
Q ss_pred ceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCccCcceeeec
Q 003985 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVS 357 (781)
Q Consensus 278 ~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~~~~~~e~v~ 357 (781)
.|||++++++. ..||.+.++. +|++.|.++||+|+ +++...+.. .......+.
T Consensus 40 ~mkIl~v~~~~-----------~~GG~~~~~~--------~l~~~L~~~G~~v~----v~~~~~~~~----~~~~~~~~~ 92 (416)
T 2x6q_A 40 GRSFVHVNSTS-----------FGGGVAEILH--------SLVPLLRSIGIEAR----WFVIEGPTE----FFNVTKTFH 92 (416)
T ss_dssp TCEEEEEESCS-----------SSSTHHHHHH--------HHHHHHHHTTCEEE----EEECCCCHH----HHHHHHHHH
T ss_pred ccEEEEEeCCC-----------CCCCHHHHHH--------HHHHHHHhCCCeEE----EEEccCCcc----hhhhhcccc
Confidence 48999998652 3689999999 77777899999999 877542210 000000000
Q ss_pred C-CCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHc-CCCceEEEEcCCCchHHHHHHHHHcCCcEEE
Q 003985 358 G-TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAEL-QGFPDFIIGNYSDGNLVASLLAYKMGITQCT 435 (781)
Q Consensus 358 ~-~~~~~I~rvP~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~l-~~~pDIIh~~~~~~~lva~llar~~gvp~v~ 435 (781)
. ..+...++ ++. ..+.....+. ..+...+ ..+||+||+|.+.....+.++++ ++|+|+
T Consensus 93 ~~~~~~~~~~-------------~~~-~~~~~~~~~~----~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~--~~p~v~ 152 (416)
T 2x6q_A 93 NALQGNESLK-------------LTE-EMKELYLNVN----RENSKFIDLSSFDYVLVHDPQPAALIEFYEK--KSPWLW 152 (416)
T ss_dssp HHHTTCCSCC-------------CCH-HHHHHHHHHH----HHHHHSSCGGGSSEEEEESSTTGGGGGGSCC--CSCEEE
T ss_pred eeeccccccc-------------ccH-HHHHHHHHHH----HHHHHHHhhcCCCEEEEeccchhhHHHHHHh--cCCEEE
Confidence 0 00000000 000 0011111111 1222222 23899999998776444443332 389999
Q ss_pred EecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCC
Q 003985 436 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 515 (781)
Q Consensus 436 t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~ 515 (781)
+.|+..... ....|+. ....+..+|.+|+++..... + ++.
T Consensus 153 ~~h~~~~~~---~~~~~~~-------------~~~~~~~~~~~i~~~s~~~~---~---------------------~~~ 192 (416)
T 2x6q_A 153 RCHIDLSSP---NREFWEF-------------LRRFVEKYDRYIFHLPEYVQ---P---------------------ELD 192 (416)
T ss_dssp ECCSCCSSC---CHHHHHH-------------HHHHHTTSSEEEESSGGGSC---T---------------------TSC
T ss_pred EEccccCCc---cHHHHHH-------------HHHHHHhCCEEEEechHHHH---h---------------------hCC
Confidence 999754321 1112211 12345677877644432211 0 111
Q ss_pred CCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHH
Q 003985 516 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYG 595 (781)
Q Consensus 516 ~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~ 595 (781)
..++.+||||+|...+.+......... ..++.+|+ ++++++|+++||+.+.||++.+++|++
T Consensus 193 --~~~~~vi~ngvd~~~~~~~~~~~~~~~--------------~~r~~~~~--~~~~~~i~~vGrl~~~Kg~~~li~a~~ 254 (416)
T 2x6q_A 193 --RNKAVIMPPSIDPLSEKNVELKQTEIL--------------RILERFDV--DPEKPIITQVSRFDPWKGIFDVIEIYR 254 (416)
T ss_dssp --TTTEEECCCCBCTTSTTTSCCCHHHHH--------------HHHHHTTC--CTTSCEEEEECCCCTTSCHHHHHHHHH
T ss_pred --ccceEEeCCCCChhhhcccccChhhHH--------------HHHHHhCC--CCCCcEEEEEeccccccCHHHHHHHHH
Confidence 368999999999877754321110000 01134666 567899999999999999999999999
Q ss_pred HhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCC
Q 003985 596 KNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFY 675 (781)
Q Consensus 596 ~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~ 675 (781)
.+.+..|+++|+|+|+|+.. ..+..+.++++++++++.++|+|+|+.+ ..+.+++..+++. +|++|+||.+
T Consensus 255 ~l~~~~~~~~l~i~G~g~~~-------~~~~~~~l~~~~~~~~~~~~V~~~G~~~-~~~~~~~~~~~~~-ad~~v~ps~~ 325 (416)
T 2x6q_A 255 KVKEKIPGVQLLLVGVMAHD-------DPEGWIYFEKTLRKIGEDYDVKVLTNLI-GVHAREVNAFQRA-SDVILQMSIR 325 (416)
T ss_dssp HHHHHCTTCEEEEEECCCTT-------CHHHHHHHHHHHHHHTTCTTEEEEEGGG-TCCHHHHHHHHHH-CSEEEECCSS
T ss_pred HHHHhCCCeEEEEEecCccc-------chhHHHHHHHHHHHhCCCCcEEEecccC-CCCHHHHHHHHHh-CCEEEECCCc
Confidence 99888889999999999751 1134567888899999999999999655 3457799999995 9999999999
Q ss_pred CCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcC
Q 003985 676 EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLV 755 (781)
Q Consensus 676 E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ys 755 (781)
|+||++++|||+||+|||+|+.||..|++.++.+|++++ |+++++++|.+++ .|++.+++++++|++++.++||
T Consensus 326 E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll----~~~~~~~~~~~~a~~~~~~~fs 399 (416)
T 2x6q_A 326 EGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--DANEAVEVVLYLL----KHPEVSKEMGAKAKERVRKNFI 399 (416)
T ss_dssp CSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEES--SHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHTB
T ss_pred CCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEEC--CHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999997 9999999998887 7999999999999999999999
Q ss_pred cchhhhccchHHHHHh
Q 003985 756 VSSDGIVDPSPFVINV 771 (781)
Q Consensus 756 w~~~~il~~ye~ll~~ 771 (781)
|+. +++.|.+++..
T Consensus 400 ~~~--~~~~~~~~~~~ 413 (416)
T 2x6q_A 400 ITK--HMERYLDILNS 413 (416)
T ss_dssp HHH--HHHHHHHHHHT
T ss_pred HHH--HHHHHHHHHHH
Confidence 965 55667777654
No 12
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=2.3e-38 Score=349.34 Aligned_cols=363 Identities=14% Similarity=0.146 Sum_probs=261.7
Q ss_pred CCceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCccCcceee
Q 003985 276 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLER 355 (781)
Q Consensus 276 p~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~~~~~~e~ 355 (781)
.++|||+++++... |..||.+.++. .+++.|.++||+|+ ++|......... ....
T Consensus 18 ~~~MkIl~i~~~~~---------~~~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~~~----~~~~ 72 (406)
T 2gek_A 18 GSHMRIGMVCPYSF---------DVPGGVQSHVL--------QLAEVLRDAGHEVS----VLAPASPHVKLP----DYVV 72 (406)
T ss_dssp ---CEEEEECSSCT---------TSCCHHHHHHH--------HHHHHHHHTTCEEE----EEESCCTTSCCC----TTEE
T ss_pred CCcceEEEEeccCC---------CCCCcHHHHHH--------HHHHHHHHCCCeEE----EEecCCccccCC----cccc
Confidence 45689999995432 34689999999 77778899999999 998764432101 1111
Q ss_pred ecCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcEEE
Q 003985 356 VSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCT 435 (781)
Q Consensus 356 v~~~~~~~I~rvP~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~l~~~pDIIh~~~~~~~lva~llar~~gvp~v~ 435 (781)
.. + +++++|+... ..+.... ..+...+.+.+.+. +||+||+|.......+.++++..++|+++
T Consensus 73 ~~---~-~~~~~~~~~~-------~~~~~~~---~~~~~~l~~~l~~~---~~Dii~~~~~~~~~~~~~~~~~~~~~~i~ 135 (406)
T 2gek_A 73 SG---G-KAVPIPYNGS-------VARLRFG---PATHRKVKKWIAEG---DFDVLHIHEPNAPSLSMLALQAAEGPIVA 135 (406)
T ss_dssp EC---C-CCC-------------------CC---HHHHHHHHHHHHHH---CCSEEEEECCCSSSHHHHHHHHEESSEEE
T ss_pred cC---C-cEEeccccCC-------ccccccc---HHHHHHHHHHHHhc---CCCEEEECCccchHHHHHHHHhcCCCEEE
Confidence 11 1 3444444321 0111111 11223344444444 89999999987755577778888999999
Q ss_pred EecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCC
Q 003985 436 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 515 (781)
Q Consensus 436 t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~ 515 (781)
+.|+..... ..++.+ +++ .+ ..++.+|.++++|....+...+ +++
T Consensus 136 ~~h~~~~~~-----~~~~~~---~~~-----~~-~~~~~~d~ii~~s~~~~~~~~~---------------------~~~ 180 (406)
T 2gek_A 136 TFHTSTTKS-----LTLSVF---QGI-----LR-PYHEKIIGRIAVSDLARRWQME---------------------ALG 180 (406)
T ss_dssp EECCCCCSH-----HHHHHH---HST-----TH-HHHTTCSEEEESSHHHHHHHHH---------------------HHS
T ss_pred EEcCcchhh-----hhHHHH---HHH-----HH-HHHhhCCEEEECCHHHHHHHHH---------------------hcC
Confidence 999853321 111111 111 11 5788999999999877652211 112
Q ss_pred CCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeec-cCCCChHHHHHHH
Q 003985 516 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARL-DHVKNMTGLVECY 594 (781)
Q Consensus 516 ~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL-~~~Kgl~~LieA~ 594 (781)
..++ +||||+|.+.|.+.... .+. +.++++|+++||+ .+.||++.+++|+
T Consensus 181 --~~~~-vi~~~v~~~~~~~~~~~------------------------~~~--~~~~~~i~~~G~~~~~~Kg~~~li~a~ 231 (406)
T 2gek_A 181 --SDAV-EIPNGVDVASFADAPLL------------------------DGY--PREGRTVLFLGRYDEPRKGMAVLLAAL 231 (406)
T ss_dssp --SCEE-ECCCCBCHHHHHTCCCC------------------------TTC--SCSSCEEEEESCTTSGGGCHHHHHHHH
T ss_pred --CCcE-EecCCCChhhcCCCchh------------------------hhc--cCCCeEEEEEeeeCccccCHHHHHHHH
Confidence 4578 99999997655443210 112 2356899999999 9999999999999
Q ss_pred HHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCC
Q 003985 595 GKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF 674 (781)
Q Consensus 595 ~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~ 674 (781)
.++.+..++++|+|+|+++. +.++++++++ .++|.|+| .++..++..+|+. +|++|+||.
T Consensus 232 ~~l~~~~~~~~l~i~G~~~~-------------~~l~~~~~~~--~~~v~~~g----~~~~~~~~~~~~~-adv~v~ps~ 291 (406)
T 2gek_A 232 PKLVARFPDVEILIVGRGDE-------------DELREQAGDL--AGHLRFLG----QVDDATKASAMRS-ADVYCAPHL 291 (406)
T ss_dssp HHHHTTSTTCEEEEESCSCH-------------HHHHHHTGGG--GGGEEECC----SCCHHHHHHHHHH-SSEEEECCC
T ss_pred HHHHHHCCCeEEEEEcCCcH-------------HHHHHHHHhc--cCcEEEEe----cCCHHHHHHHHHH-CCEEEecCC
Confidence 99988888999999999842 4667777766 68899999 6778899999995 999999996
Q ss_pred -CCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Q 003985 675 -YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYER 753 (781)
Q Consensus 675 -~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ 753 (781)
.|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++ .|++.++++++++++.+. +
T Consensus 292 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~~-~ 366 (406)
T 2gek_A 292 GGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGIL----EDDQLRAGYVARASERVH-R 366 (406)
T ss_dssp SCCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHGG-G
T ss_pred CCCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHH-h
Confidence 9999999999999999999999999999999999999999999999999998887 799999999999999997 9
Q ss_pred cCcchhhhccchHHHHHh
Q 003985 754 LVVSSDGIVDPSPFVINV 771 (781)
Q Consensus 754 ysw~~~~il~~ye~ll~~ 771 (781)
|+|+.. ++.|.+++..
T Consensus 367 ~s~~~~--~~~~~~~~~~ 382 (406)
T 2gek_A 367 YDWSVV--SAQIMRVYET 382 (406)
T ss_dssp GBHHHH--HHHHHHHHHH
T ss_pred CCHHHH--HHHHHHHHHH
Confidence 999764 4445555543
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=1.1e-37 Score=346.20 Aligned_cols=357 Identities=13% Similarity=0.085 Sum_probs=257.7
Q ss_pred eEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCccCcceeeecC
Q 003985 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (781)
Q Consensus 279 ~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~~~~~~e~v~~ 358 (781)
|||++++++. |..||.+.++. +|+++|+++ |+|+ |+|.... +.....
T Consensus 1 MkI~~v~~~~----------p~~gG~~~~~~--------~l~~~L~~~-~~V~----v~~~~~~---g~~~~~------- 47 (413)
T 3oy2_A 1 MKLIIVGAHS----------SVPSGYGRVMR--------AIVPRISKA-HEVI----VFGIHAF---GRSVHA------- 47 (413)
T ss_dssp CEEEEEEECT----------TCCSHHHHHHH--------HHHHHHTTT-SEEE----EEEESCC---SCCSCS-------
T ss_pred CeEEEecCCC----------CCCCCHHHHHH--------HHHHHHHhc-CCeE----EEeecCC---Cccccc-------
Confidence 8999999753 45699999999 777788999 9999 8875532 110000
Q ss_pred CCCeEEEEeccCCCcccccccccc-cCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCc----E
Q 003985 359 TEHTHILRVPFRSEKGILRQWISR-FDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGIT----Q 433 (781)
Q Consensus 359 ~~~~~I~rvP~~~~~~~~~~~isr-~~i~~yl~~f~~~~~~~i~~~l~~~pDIIh~~~~~~~lva~llar~~gvp----~ 433 (781)
....+...... .++ +++. ...| ..+.+.+... +||+||+|++ ....+.++++..++| .
T Consensus 48 --~~~~~~~~~~~---~~~-~~~~~~~~~-------~~l~~~l~~~---~~Div~~~~~-~~~~~~~~~~~~~~~~~~~~ 110 (413)
T 3oy2_A 48 --NIEEFDAQTAE---HVR-GLNEQGFYY-------SGLSEFIDVH---KPDIVMIYND-PIVIGNYLLAMGKCSHRTKI 110 (413)
T ss_dssp --SSEEEEHHHHH---HHT-TCCSTTCCH-------HHHHHHHHHH---CCSEEEEEEC-HHHHHHHHHHGGGCCSCCEE
T ss_pred --ccccCCccccc---ccc-ccccccchH-------HHHHHHHHhc---CCCEEEEcch-HHHHHHHHHHhccCCCCCce
Confidence 01110100000 000 1110 1111 1223344444 8999999944 445566677776655 3
Q ss_pred EEEecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCC--EEEecCHHHHhhccccccccccccccccccceeee
Q 003985 434 CTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNAD--FIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVV 511 (781)
Q Consensus 434 v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD--~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~ 511 (781)
+...|...... +.. ....++.+| .||++|....+.+.+
T Consensus 111 ~~~~~~~~~~~--------~~~------------~~~~~~~~~~~~ii~~S~~~~~~~~~-------------------- 150 (413)
T 3oy2_A 111 VLYVDLVSKNI--------REN------------LWWIFSHPKVVGVMAMSKCWISDICN-------------------- 150 (413)
T ss_dssp EEEECCCSBSC--------CGG------------GGGGGGCTTEEEEEESSTHHHHHHHH--------------------
T ss_pred eeeccccchhh--------HHH------------HHHHHhccCCceEEEcCHHHHHHHHH--------------------
Confidence 44555432211 000 013567888 999999887653221
Q ss_pred ccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHH
Q 003985 512 HGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLV 591 (781)
Q Consensus 512 ~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~Li 591 (781)
.|+ ..++.+||||+|.+.|.. .. +.+|+....++++|+++||+.+.||++.++
T Consensus 151 ~~~---~~~~~vi~ngvd~~~~~~---~~---------------------~~~~~~~~~~~~~il~vGr~~~~Kg~~~li 203 (413)
T 3oy2_A 151 YGC---KVPINIVSHFVDTKTIYD---AR---------------------KLVGLSEYNDDVLFLNMNRNTARKRLDIYV 203 (413)
T ss_dssp TTC---CSCEEECCCCCCCCCCTT---HH---------------------HHTTCGGGTTSEEEECCSCSSGGGTHHHHH
T ss_pred cCC---CCceEEeCCCCCHHHHHH---HH---------------------HhcCCCcccCceEEEEcCCCchhcCcHHHH
Confidence 122 469999999999987711 11 225553223788999999999999999999
Q ss_pred HHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCc-------EEEeccccCcCChHHHHHHHHc
Q 003985 592 ECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQ-------FRWIAAQTNRARNGELYRYIAD 664 (781)
Q Consensus 592 eA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~-------V~flG~~~~~v~~~el~~~la~ 664 (781)
+|++++.+..++++|+|+|+|+.... .+..+.++++++++++.++ |.|.| .++.+++..+|+.
T Consensus 204 ~a~~~l~~~~~~~~l~ivG~g~~~~~------~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g----~~~~~~~~~~~~~ 273 (413)
T 3oy2_A 204 LAAARFISKYPDAKVRFLCNSHHESK------FDLHSIALRELVASGVDNVFTHLNKIMINRT----VLTDERVDMMYNA 273 (413)
T ss_dssp HHHHHHHHHCTTCCEEEEEECCTTCS------CCHHHHHHHHHHHHTCSCHHHHHTTEEEECS----CCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEEeCCcccch------hhHHHHHHHHHHHcCcccccccccceeeccC----cCCHHHHHHHHHh
Confidence 99999988889999999999976110 0123678899999999987 78888 6778999999995
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCe---------------EE--EECCCCHHHHHHHHHH
Q 003985 665 TKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGAS---------------GF--HIDPYHPDQAAELMAD 727 (781)
Q Consensus 665 aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~---------------G~--lv~p~d~e~lA~~I~~ 727 (781)
+|++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+ |+ +++++|+++++++| +
T Consensus 274 -adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~ 351 (413)
T 3oy2_A 274 -CDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-T 351 (413)
T ss_dssp -CSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-H
T ss_pred -CCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-H
Confidence 99999999999999999999999999999999999999999888 99 99999999999999 9
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHH
Q 003985 728 FFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVIN 770 (781)
Q Consensus 728 ~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~ 770 (781)
++ .|++.++++++++++++.++|||+.+ ++.|++++.
T Consensus 352 l~----~~~~~~~~~~~~a~~~~~~~fs~~~~--~~~~~~~~~ 388 (413)
T 3oy2_A 352 FF----KDEKNRKEYGKRVQDFVKTKPTWDDI--SSDIIDFFN 388 (413)
T ss_dssp HT----TSHHHHHHHHHHHHHHHTTSCCHHHH--HHHHHHHHH
T ss_pred Hh----cCHHHHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHH
Confidence 88 89999999999999999999999765 344555544
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=2.2e-36 Score=327.63 Aligned_cols=311 Identities=14% Similarity=0.067 Sum_probs=238.3
Q ss_pred ceEEEEEccC--------cCCcccccCCCC-CcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCc
Q 003985 278 VFNVVILSPH--------GYFGQANVLGLP-DTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT 348 (781)
Q Consensus 278 ~~rI~ivS~h--------g~~~~~~vlg~p-~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~ 348 (781)
+|||++++++ .+|- .| ..||.+.++. +|++.|.++||+|+ ++|.......
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~------~p~~~gG~~~~~~--------~l~~~L~~~G~~v~----v~~~~~~~~~--- 61 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISV------PPQGYGGIQWVVA--------NLMDGLLELGHEVF----LLGAPGSPAG--- 61 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCS------SCSSSCHHHHHHH--------HHHHHHHHTTCEEE----EESCTTSCCC---
T ss_pred ccEEEEEeccccccCccccccc------CcccCChHHHHHH--------HHHHHHHHcCCeEE----EEecCCCCCC---
Confidence 3899999987 2211 12 3699999999 77777899999999 8876632211
Q ss_pred cCcceeeecCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHH
Q 003985 349 CNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYK 428 (781)
Q Consensus 349 ~~~~~e~v~~~~~~~I~rvP~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~l~~~pDIIh~~~~~~~lva~llar~ 428 (781)
..++.+++ .. .+. .+.+.+.+ .+||+||+|.+.....+ ++.
T Consensus 62 ----------~~~~~~~~--~~--------------~~~-------~l~~~l~~---~~~Dvi~~~~~~~~~~~---~~~ 102 (342)
T 2iuy_A 62 ----------RPGLTVVP--AG--------------EPE-------EIERWLRT---ADVDVVHDHSGGVIGPA---GLP 102 (342)
T ss_dssp ----------STTEEECS--CC--------------SHH-------HHHHHHHH---CCCSEEEECSSSSSCST---TCC
T ss_pred ----------CCcceecc--CC--------------cHH-------HHHHHHHh---cCCCEEEECCchhhHHH---Hhh
Confidence 01233321 11 010 23333433 38999999997764332 566
Q ss_pred cCCcEEEEecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccce
Q 003985 429 MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLY 508 (781)
Q Consensus 429 ~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly 508 (781)
.++| +++.|+..... . .+|.+|++|....+...
T Consensus 103 ~~~p-v~~~h~~~~~~---------------~-------------~~d~ii~~S~~~~~~~~------------------ 135 (342)
T 2iuy_A 103 PGTA-FISSHHFTTRP---------------V-------------NPVGCTYSSRAQRAHCG------------------ 135 (342)
T ss_dssp TTCE-EEEEECSSSBC---------------S-------------CCTTEEESCHHHHHHTT------------------
T ss_pred cCCC-EEEecCCCCCc---------------c-------------cceEEEEcCHHHHHHHh------------------
Confidence 7999 99999864321 0 18999999988765211
Q ss_pred eeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChH
Q 003985 509 RVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMT 588 (781)
Q Consensus 509 ~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~ 588 (781)
. ..++.+||||+|.+.|.+... . .+++++|+++||+.+.||++
T Consensus 136 ------~--~~~~~vi~ngvd~~~~~~~~~--------------------------~---~~~~~~i~~vG~~~~~Kg~~ 178 (342)
T 2iuy_A 136 ------G--GDDAPVIPIPVDPARYRSAAD--------------------------Q---VAKEDFLLFMGRVSPHKGAL 178 (342)
T ss_dssp ------C--CTTSCBCCCCBCGGGSCCSTT--------------------------C---CCCCSCEEEESCCCGGGTHH
T ss_pred ------c--CCceEEEcCCCChhhcCcccc--------------------------c---CCCCCEEEEEeccccccCHH
Confidence 1 458889999999987766431 0 23466899999999999999
Q ss_pred HHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcE
Q 003985 589 GLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGA 668 (781)
Q Consensus 589 ~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadv 668 (781)
.+++|++++ +++|+|+|+|+. .+.+++++++++ ++|+|+| .++..++..+++. +|+
T Consensus 179 ~li~a~~~~-----~~~l~i~G~g~~------------~~~l~~~~~~~~--~~v~~~g----~~~~~~l~~~~~~-adv 234 (342)
T 2iuy_A 179 EAAAFAHAC-----GRRLVLAGPAWE------------PEYFDEITRRYG--STVEPIG----EVGGERRLDLLAS-AHA 234 (342)
T ss_dssp HHHHHHHHH-----TCCEEEESCCCC------------HHHHHHHHHHHT--TTEEECC----CCCHHHHHHHHHH-CSE
T ss_pred HHHHHHHhc-----CcEEEEEeCccc------------HHHHHHHHHHhC--CCEEEec----cCCHHHHHHHHHh-CCE
Confidence 999999987 689999999976 667788888887 7899999 6778899999995 999
Q ss_pred EEEcCC----------CCCCcHHHHHHHHcCCcEEEcCcccccccccc--CCeEEEECCCCHHHHHHHHHHHHHhccCCH
Q 003985 669 FVQPAF----------YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEH--GASGFHIDPYHPDQAAELMADFFGKCKENP 736 (781)
Q Consensus 669 fV~PS~----------~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~d--g~~G~lv~p~d~e~lA~~I~~~l~~l~~dp 736 (781)
+|+||. .|+||++++|||+||+|||+|+.||..|++.+ +.+|+++++ |+++++++|.+++ +
T Consensus 235 ~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~----~-- 307 (342)
T 2iuy_A 235 VLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLP----A-- 307 (342)
T ss_dssp EEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC----C--
T ss_pred EEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-CHHHHHHHHHHHH----H--
Confidence 999999 89999999999999999999999999999999 999999999 9999999997665 3
Q ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHh
Q 003985 737 SHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINV 771 (781)
Q Consensus 737 ~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~~ 771 (781)
++++++++.++|||+.. ++.|.+++..
T Consensus 308 ------~~~~~~~~~~~~s~~~~--~~~~~~~~~~ 334 (342)
T 2iuy_A 308 ------SDEVRRAAVRLWGHVTI--AERYVEQYRR 334 (342)
T ss_dssp ------HHHHHHHHHHHHBHHHH--HHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCHHHH--HHHHHHHHHH
Confidence 77889999999999764 4445555443
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=4.6e-33 Score=312.57 Aligned_cols=353 Identities=10% Similarity=0.009 Sum_probs=229.2
Q ss_pred CCceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCccCcceee
Q 003985 276 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLER 355 (781)
Q Consensus 276 p~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~~~~~~e~ 355 (781)
...|||++++++..|+ +..||.. .+. +|+++|+++||+|+ |+|+..... . .....
T Consensus 44 ~~~mrI~~v~~~~~p~-------~~~GG~~-~v~--------~la~~L~~~GheV~----Vvt~~~~~~--~---~~~~~ 98 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQE-------HMFGGIS-TAL--------KLFEQFDNKKFKKR----IILTDATPN--P---KDLQS 98 (413)
T ss_dssp CCSCEEEEEESCCCGG-------GCSHHHH-HHH--------HHHTTSCTTTCEEE----EEESSCCCC--H---HHHGG
T ss_pred CCCceEEEEeCCCCcc-------ccccHHH-HHH--------HHHHHHHHcCCceE----EEEecCCCC--h---HHHHh
Confidence 3469999999887653 1247774 466 78888999999999 999863210 0 00011
Q ss_pred ecCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHH-------
Q 003985 356 VSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYK------- 428 (781)
Q Consensus 356 v~~~~~~~I~rvP~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~l~~~pDIIh~~~~~~~lva~llar~------- 428 (781)
+. .... .|+.....+.. .+..+... ..... ...+||+||++++.+...+..+.+.
T Consensus 99 ~~---~~~~--~~~~~~~~~~~------~i~~~~~~-----~~~~~--~~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~ 160 (413)
T 2x0d_A 99 FK---SFKY--VMPEEDKDFAL------QIVPFNDR-----YNRTI--PVAKHDIFIATAWWTAYAAQRIVSWQSDTYGI 160 (413)
T ss_dssp GT---TSEE--CCTTCCCCCSE------EEEECSCC-----TTCCE--EECTTEEEEECSHHHHHHHHHHHHHHHHHHTC
T ss_pred hh---ccce--eeccCCccccc------eeeecccc-----ccccc--cCCCCCEEEEehHHHHHHHHHhhhhhhhhccc
Confidence 11 1111 11111100000 00000000 00000 0137999999987665555444211
Q ss_pred cCCcEEEEecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCC--EEEecCHHHHhhcccccccccccccccccc
Q 003985 429 MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNAD--FIITSTYQEIAGTKNTVGQYESHTAFTLPG 506 (781)
Q Consensus 429 ~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD--~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ 506 (781)
...+.+..+|+.++..+..... + ......++.++ .+|++|....+.+.+
T Consensus 161 ~~~~~~~~v~~~~~~~~~~~~~--------~------~~~~~~~~~~~~~~vi~~S~~~~~~l~~--------------- 211 (413)
T 2x0d_A 161 PPNKILYIIQDFEPGFYQWSSQ--------Y------VLAESTYKYRGPQIAVFNSELLKQYFNN--------------- 211 (413)
T ss_dssp CCCCEEEEECSCGGGGSCSSHH--------H------HHHHHTTSCCSCEEEEEESHHHHHHHHH---------------
T ss_pred ccCcEEEEEeechhhcCccChH--------H------HHHHHHhccCCceEEEEcCHHHHHHHHH---------------
Confidence 2457787888765432211110 0 11223344444 588999877653221
Q ss_pred ceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeec-cCCC
Q 003985 507 LYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARL-DHVK 585 (781)
Q Consensus 507 ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL-~~~K 585 (781)
.|++ .+++.++|||+|.+.|.+.. .+ .++++.|+++||+ .+.|
T Consensus 212 -----~g~~--~~~~~~i~~g~d~~~~~~~~--------------------------~~---~~~~~~il~~gr~~~~~K 255 (413)
T 2x0d_A 212 -----KGYN--FTDEYFFQPKINTTLKNYIN--------------------------DK---RQKEKIILVYGRPSVKRN 255 (413)
T ss_dssp -----HTCC--CSEEEEECCCCCHHHHTTTT--------------------------SC---CCCCSEEEEEECTTCGGG
T ss_pred -----cCCC--CCceEEeCCCcCchhhcccc--------------------------cc---cCCCCEEEEEecCchhcc
Confidence 1332 35788999999976443210 11 2456788899997 6899
Q ss_pred ChHHHHHHHHHhhccCCC---eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHH
Q 003985 586 NMTGLVECYGKNSQLREL---VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYI 662 (781)
Q Consensus 586 gl~~LieA~~~l~~~~~~---~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~l 662 (781)
|++.+++|++++.+..|+ ++|+|+|+|+.. .++++.++|+|+| .++.+++..+|
T Consensus 256 g~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-------------------~~l~~~~~v~f~G----~~~~~~l~~~~ 312 (413)
T 2x0d_A 256 AFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-------------------IALGKGIHLNSLG----KLTLEDYADLL 312 (413)
T ss_dssp CHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-------------------EEEETTEEEEEEE----SCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-------------------hhcCCcCcEEEcC----CCCHHHHHHHH
Confidence 999999999999877665 899999998661 2456778999999 67789999999
Q ss_pred HccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHH
Q 003985 663 ADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKI 742 (781)
Q Consensus 663 a~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~ 742 (781)
+. +|+||+||.+|+||++++||||||+|||+++ ||..|+|.++.+|++++|+|++++|++|.+++ +|++.+++
T Consensus 313 ~~-adv~v~pS~~E~~g~~~lEAmA~G~PVV~~~-~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll----~~~~~~~~- 385 (413)
T 2x0d_A 313 KR-SSIGISLMISPHPSYPPLEMAHFGLRVITNK-YENKDLSNWHSNIVSLEQLNPENIAETLVELC----MSFNNRDV- 385 (413)
T ss_dssp HH-CCEEECCCSSSSCCSHHHHHHHTTCEEEEEC-BTTBCGGGTBTTEEEESSCSHHHHHHHHHHHH----HHTC-----
T ss_pred Hh-CCEEEEecCCCCCCcHHHHHHhCCCcEEEeC-CCcchhhhcCCCEEEeCCCCHHHHHHHHHHHH----cCHHHHHH-
Confidence 95 9999999999999999999999999999964 66789999999999999999999999998887 67777776
Q ss_pred HHHHHHHHHHhcCcchh-hhccchHHHH
Q 003985 743 SDGGLKRIYERLVVSSD-GIVDPSPFVI 769 (781)
Q Consensus 743 s~~a~~~v~~~ysw~~~-~il~~ye~ll 769 (781)
+|++++ ++|||+.. .-.+.|.+++
T Consensus 386 --~~~~~~-~~~~W~~~~~~~~~~~~l~ 410 (413)
T 2x0d_A 386 --DKKESS-NMMFYINEFNEFSFIKEIE 410 (413)
T ss_dssp -----CCB-SCGGGCCCC---TTHHHHH
T ss_pred --hHHHHH-HhCCHHHHHHHHHHHHHHH
Confidence 566666 58999876 3356666664
No 16
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.97 E-value=7.7e-30 Score=278.00 Aligned_cols=340 Identities=12% Similarity=0.045 Sum_probs=235.2
Q ss_pred ceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCccCcceeeec
Q 003985 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVS 357 (781)
Q Consensus 278 ~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~~~~~~e~v~ 357 (781)
.|||++++. .+||.+..+. .|+++|.++||+|+ ++|...... . +..
T Consensus 6 ~mkIl~~~~-------------~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~-----~---~~~- 51 (364)
T 1f0k_A 6 GKRLMVMAG-------------GTGGHVFPGL--------AVAHHLMAQGWQVR----WLGTADRME-----A---DLV- 51 (364)
T ss_dssp -CEEEEECC-------------SSHHHHHHHH--------HHHHHHHTTTCEEE----EEECTTSTH-----H---HHG-
T ss_pred CcEEEEEeC-------------CCccchhHHH--------HHHHHHHHcCCEEE----EEecCCcch-----h---hhc-
Confidence 489999971 1478777777 77778899999999 888653210 0 001
Q ss_pred CCCCeEEEEeccCCCcc-cccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcEEEE
Q 003985 358 GTEHTHILRVPFRSEKG-ILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTI 436 (781)
Q Consensus 358 ~~~~~~I~rvP~~~~~~-~~~~~isr~~i~~yl~~f~~~~~~~i~~~l~~~pDIIh~~~~~~~lva~llar~~gvp~v~t 436 (781)
...++.+..++.....+ ....++ ...+..+ .....+.+.+.+. +||+||+|....++.+.++++..++|++++
T Consensus 52 ~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~l~~~l~~~---~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 125 (364)
T 1f0k_A 52 PKHGIEIDFIRISGLRGKGIKALI--AAPLRIF-NAWRQARAIMKAY---KPDVVLGMGGYVSGPGGLAAWSLGIPVVLH 125 (364)
T ss_dssp GGGTCEEEECCCCCCTTCCHHHHH--TCHHHHH-HHHHHHHHHHHHH---CCSEEEECSSTTHHHHHHHHHHTTCCEEEE
T ss_pred cccCCceEEecCCccCcCccHHHH--HHHHHHH-HHHHHHHHHHHhc---CCCEEEEeCCcCchHHHHHHHHcCCCEEEE
Confidence 11256777766543211 000000 0011111 1223344444444 899999998776677788888899999999
Q ss_pred ecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCC
Q 003985 437 AHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDV 516 (781)
Q Consensus 437 ~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~ 516 (781)
.|+.... + ...+..+.+|.+++++...
T Consensus 126 ~~~~~~~--------~--------------~~~~~~~~~d~v~~~~~~~------------------------------- 152 (364)
T 1f0k_A 126 EQNGIAG--------L--------------TNKWLAKIATKVMQAFPGA------------------------------- 152 (364)
T ss_dssp ECSSSCC--------H--------------HHHHHTTTCSEEEESSTTS-------------------------------
T ss_pred ecCCCCc--------H--------------HHHHHHHhCCEEEecChhh-------------------------------
Confidence 9974210 0 1123456799999877421
Q ss_pred CCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCE-EEEEeeccCCCChHHHHHHHH
Q 003985 517 FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPI-VFSMARLDHVKNMTGLVECYG 595 (781)
Q Consensus 517 f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~i-Il~vGRL~~~Kgl~~LieA~~ 595 (781)
+. ++.+|+||+|.+.|.+.... ..+++ ++++++ +++.|++.+.||.+.+++|++
T Consensus 153 ~~-~~~~i~n~v~~~~~~~~~~~----------------------~~~~~--~~~~~~il~~~g~~~~~k~~~~li~a~~ 207 (364)
T 1f0k_A 153 FP-NAEVVGNPVRTDVLALPLPQ----------------------QRLAG--REGPVRVLVVGGSQGARILNQTMPQVAA 207 (364)
T ss_dssp SS-SCEECCCCCCHHHHTSCCHH----------------------HHHTT--CCSSEEEEEECTTTCCHHHHHHHHHHHH
T ss_pred cC-CceEeCCccchhhcccchhh----------------------hhccc--CCCCcEEEEEcCchHhHHHHHHHHHHHH
Confidence 12 67799999998765443211 12343 344554 555679999999999999999
Q ss_pred HhhccCCCeE-EEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCC
Q 003985 596 KNSQLRELVN-LVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF 674 (781)
Q Consensus 596 ~l~~~~~~~~-LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~ 674 (781)
++.+ +++ ++++|+++ .+.+++++++++++ +|+|+|++ +++..+|+. +|++|+||.
T Consensus 208 ~l~~---~~~~l~i~G~~~-------------~~~l~~~~~~~~~~-~v~~~g~~------~~~~~~~~~-ad~~v~~sg 263 (364)
T 1f0k_A 208 KLGD---SVTIWHQSGKGS-------------QQSVEQAYAEAGQP-QHKVTEFI------DDMAAAYAW-ADVVVCRSG 263 (364)
T ss_dssp HHGG---GEEEEEECCTTC-------------HHHHHHHHHHTTCT-TSEEESCC------SCHHHHHHH-CSEEEECCC
T ss_pred HhcC---CcEEEEEcCCch-------------HHHHHHHHhhcCCC-ceEEecch------hhHHHHHHh-CCEEEECCc
Confidence 9865 688 56677764 24677888888874 79999954 357888885 999999983
Q ss_pred CCCCcHHHHHHHHcCCcEEEcCccccc--------cccccCCeEEEECCCC--HHHHHHHHHHHHHhccCCHHHHHHHHH
Q 003985 675 YEAFGLTVVEAMTCGLPTFATCHGGPA--------EIIEHGASGFHIDPYH--PDQAAELMADFFGKCKENPSHWKKISD 744 (781)
Q Consensus 675 ~E~fGltvlEAMa~GlPVIaT~~GG~~--------EiI~dg~~G~lv~p~d--~e~lA~~I~~~l~~l~~dp~~~~~~s~ 744 (781)
|++++|||+||+|||+|+.||.. +++.+| .|++++++| +++++++|. ++ |++.++++++
T Consensus 264 ----~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~----~l--~~~~~~~~~~ 332 (364)
T 1f0k_A 264 ----ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLA----GW--SRETLLTMAE 332 (364)
T ss_dssp ----HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHH----TC--CHHHHHHHHH
T ss_pred ----hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHH----hc--CHHHHHHHHH
Confidence 99999999999999999999864 466555 499999988 999999984 44 9999999999
Q ss_pred HHHHHHHHhcCcchhhhccchHHHHHhcC
Q 003985 745 GGLKRIYERLVVSSDGIVDPSPFVINVIS 773 (781)
Q Consensus 745 ~a~~~v~~~ysw~~~~il~~ye~ll~~~~ 773 (781)
++++.+ ++|+|+. +++.|++++...+
T Consensus 333 ~~~~~~-~~~~~~~--~~~~~~~~y~~~~ 358 (364)
T 1f0k_A 333 RARAAS-IPDATER--VANEVSRVARALE 358 (364)
T ss_dssp HHHHTC-CTTHHHH--HHHHHHHHHTTC-
T ss_pred HHHHhh-ccCHHHH--HHHHHHHHHHHHH
Confidence 999887 5899955 6677888875443
No 17
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.97 E-value=2.6e-31 Score=297.33 Aligned_cols=245 Identities=13% Similarity=0.041 Sum_probs=177.9
Q ss_pred CceEEEEcCCCchHHHHHHHHHcCCcEEEEecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHH
Q 003985 407 FPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEI 486 (781)
Q Consensus 407 ~pDIIh~~~~~~~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~ 486 (781)
++|+||.+...... ...+++..++|++++.|+..... ... ...+ ....+..+++.||.||++|....
T Consensus 124 ~~DvIh~~~~~~~~-~~~~~~~~~~p~v~~~h~~~~~~------~~~----~~~~--~~~~~~~~~~~ad~vi~~S~~~~ 190 (406)
T 2hy7_A 124 ESDVIVFESGIAVA-FIELAKRVNPAAKLVYRASDGLS------TIN----VASY--IEREFDRVAPTLDVIALVSPAMA 190 (406)
T ss_dssp HCSEEEEESSGGGG-GHHHHHHHCTTSEEEEEESSCHH------HHT----CCHH--HHHHHHHHGGGCSEEEESCGGGG
T ss_pred CCCEEEECCchHHH-HHHHHHHhCCCEEEEEeccchhh------ccc----ccHH--HHHHHHHHHHhCCEEEEcCHHHH
Confidence 68999943322221 12566778999999999753210 000 0000 11234567899999999998764
Q ss_pred hhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCC
Q 003985 487 AGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGT 566 (781)
Q Consensus 487 ~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~~~g~ 566 (781)
+.+. . .. ++.+||||+|.+.|.+... .
T Consensus 191 ~~~~------------------------~-~~-~i~vipngvd~~~f~~~~~-------------------------~-- 217 (406)
T 2hy7_A 191 AEVV------------------------S-RD-NVFHVGHGVDHNLDQLGDP-------------------------S-- 217 (406)
T ss_dssp GGCS------------------------C-ST-TEEECCCCBCTTHHHHHCS-------------------------C--
T ss_pred HHHH------------------------h-cC-CEEEEcCCcChHhcCcccc-------------------------c--
Confidence 4110 0 02 8999999999876532110 0
Q ss_pred CCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEe
Q 003985 567 LSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 646 (781)
Q Consensus 567 l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~fl 646 (781)
...++++|+|+||+.+.||+ ++ .+.+..++++|+|+|+|+ ++++++.++|+|+
T Consensus 218 -~~~~~~~i~~vGrl~~~Kg~---~~---~l~~~~~~~~l~ivG~g~--------------------~~~~~l~~~V~f~ 270 (406)
T 2hy7_A 218 -PYAEGIHAVAVGSMLFDPEF---FV---VASKAFPQVTFHVIGSGM--------------------GRHPGYGDNVIVY 270 (406)
T ss_dssp -SCCSSEEEEEECCTTBCHHH---HH---HHHHHCTTEEEEEESCSS--------------------CCCTTCCTTEEEE
T ss_pred -ccCCCcEEEEEeccccccCH---HH---HHHHhCCCeEEEEEeCch--------------------HHhcCCCCCEEEc
Confidence 02234789999999999998 33 333446789999999884 3456788999999
Q ss_pred ccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHH-------HcCCcEEEcCccccccccccCCeEEE-ECCCCH
Q 003985 647 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAM-------TCGLPTFATCHGGPAEIIEHGASGFH-IDPYHP 718 (781)
Q Consensus 647 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAM-------a~GlPVIaT~~GG~~EiI~dg~~G~l-v~p~d~ 718 (781)
| .++.+++..+++. +|++|+||..|+||++++||| |||+|||+|+. +.++.+|++ ++|+|+
T Consensus 271 G----~~~~~~l~~~~~~-adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d~ 339 (406)
T 2hy7_A 271 G----EMKHAQTIGYIKH-ARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGNA 339 (406)
T ss_dssp C----CCCHHHHHHHHHT-CSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTCH
T ss_pred C----CCCHHHHHHHHHh-cCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEeCCCCH
Confidence 9 6778899999995 999999999999999999999 99999999987 677889999 999999
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchh--hhccc--hHHHH
Q 003985 719 DQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSD--GIVDP--SPFVI 769 (781)
Q Consensus 719 e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~--~il~~--ye~ll 769 (781)
++++++|.+++ +|++ + ...++|||+.. .+++. |+++.
T Consensus 340 ~~la~ai~~ll----~~~~---------~-~~~~~~sw~~~a~~~~~~~~y~~~~ 380 (406)
T 2hy7_A 340 DSVIAAITQAL----EAPR---------V-RYRQCLNWSDTTDRVLDPRAYPETR 380 (406)
T ss_dssp HHHHHHHHHHH----HCCC---------C-CCSCCCBHHHHHHHHHCGGGSGGGB
T ss_pred HHHHHHHHHHH----hCcc---------h-hhhhcCCHHHHHHHHHHhhcccccC
Confidence 99999998887 5655 1 23478999876 45555 55443
No 18
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.96 E-value=2.3e-29 Score=291.10 Aligned_cols=336 Identities=14% Similarity=0.148 Sum_probs=221.2
Q ss_pred CCceEEEEcCCCchHHHHHHHHH-cCCcEEEEecCCccccC----CCChhhHhh--hh-----ccccchhhhhHHHHHHh
Q 003985 406 GFPDFIIGNYSDGNLVASLLAYK-MGITQCTIAHALEKTKY----PDSDIYWKK--FD-----EKYHFSCQFTADLIAMN 473 (781)
Q Consensus 406 ~~pDIIh~~~~~~~lva~llar~-~gvp~v~t~H~l~~~k~----~~s~~~~k~--~~-----~~y~f~~~~~~e~~a~~ 473 (781)
.+|||+|+|+|..++++.++++. .+++.|+|+|++...++ ...++++.. +. ....+...+..++.+..
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKaga~ 259 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAH 259 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHHHHH
Confidence 67999999999999888888754 58999999999854333 111223211 00 00112223455777888
Q ss_pred hCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhh
Q 003985 474 NADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQL 553 (781)
Q Consensus 474 ~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~ 553 (781)
.||.|+|+|+..+..++... +. .+.. +||||+|.+.|.|.....+.....+..+.+.
T Consensus 260 ~AD~ITTVS~~yA~Ei~~Ll-------------------~r---~~d~-iIpNGID~~~f~p~~~~~~~k~~aK~klq~~ 316 (725)
T 3nb0_A 260 SADVFTTVSQITAFEAEHLL-------------------KR---KPDG-ILPNGLNVIKFQAFHEFQNLHALKKEKINDF 316 (725)
T ss_dssp HSSEEEESSHHHHHHHHHHT-------------------SS---CCSE-ECCCCBCCCCCSSTTHHHHHHHHHHHHHHHH
T ss_pred hCCEEEECCHHHHHHHHHHh-------------------cC---CCCE-EEcCCccccccCcchhhHHHHHHHHHHHHHH
Confidence 99999999998876544321 11 2233 3999999999998633222111111222222
Q ss_pred ccCccccccccCCCCC-CCCCEEEEEeecc-CCCChHHHHHHHHHhhcc-------CCCeEEEEEeCcCCCC--------
Q 003985 554 LFDPEQNDEHVGTLSD-RSKPIVFSMARLD-HVKNMTGLVECYGKNSQL-------RELVNLVVVAGYIDVN-------- 616 (781)
Q Consensus 554 l~~~~~~~~~~g~l~~-~~k~iIl~vGRL~-~~Kgl~~LieA~~~l~~~-------~~~~~LvIVG~g~~~~-------- 616 (781)
+.. .....+++ + +++++|+.+||+. +.||++.+++|+.++... ..-+.|+|+..+....
T Consensus 317 l~~--~~~~~l~l--~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~ 392 (725)
T 3nb0_A 317 VRG--HFHGCFDF--DLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQ 392 (725)
T ss_dssp HHH--HTTTCCCS--CGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHH
T ss_pred HHh--hcccCCCC--CCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcch
Confidence 100 00011233 3 3456677789999 799999999999988642 2346788888774310
Q ss_pred -----------------------------------CCc-chHHHH---------------------------------HH
Q 003985 617 -----------------------------------KSK-DREEIA---------------------------------EI 627 (781)
Q Consensus 617 -----------------------------------~~~-d~ee~~---------------------------------~~ 627 (781)
+.+ |.++.- ..
T Consensus 393 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~ 472 (725)
T 3nb0_A 393 AEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDAN 472 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGG
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCc
Confidence 000 111000 11
Q ss_pred HHHHHHHHHcCCCCc------EEEec-cccC--cCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc
Q 003985 628 EKMHELMKTYKLDGQ------FRWIA-AQTN--RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG 698 (781)
Q Consensus 628 ~~l~~li~el~L~~~------V~flG-~~~~--~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~G 698 (781)
+.+...++++++.++ |.|++ +.++ .+-..++..+++ ++|+||+||++|+||++++||||||+|||+|+.|
T Consensus 473 D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~-~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~g 551 (725)
T 3nb0_A 473 DLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVR-GCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVS 551 (725)
T ss_dssp CHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHH-HCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTB
T ss_pred cHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHh-hceEEEeccccCCCCHHHHHHHHcCCCEEEeCCC
Confidence 223344566777655 56664 2221 111235788888 4999999999999999999999999999999999
Q ss_pred ccccccccCC-------eEEEE---CCCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcCcchh--hhccch
Q 003985 699 GPAEIIEHGA-------SGFHI---DPYHPDQAAELMADFFGKCK-ENPSHWKKISDGGLKRIYERLVVSSD--GIVDPS 765 (781)
Q Consensus 699 G~~EiI~dg~-------~G~lv---~p~d~e~lA~~I~~~l~~l~-~dp~~~~~~s~~a~~~v~~~ysw~~~--~il~~y 765 (781)
|+.|+|.++. +|+++ ++.|+++++++|.+++..+. .++..+.+++++|++.+ ++|+|++. .++++|
T Consensus 552 G~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Y 630 (725)
T 3nb0_A 552 GFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKAR 630 (725)
T ss_dssp HHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHH
T ss_pred ChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 9999998763 69988 45688888888877775544 47888999999998777 68999886 666677
Q ss_pred HHHHH
Q 003985 766 PFVIN 770 (781)
Q Consensus 766 e~ll~ 770 (781)
+.++.
T Consensus 631 e~aL~ 635 (725)
T 3nb0_A 631 QLALR 635 (725)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76664
No 19
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.96 E-value=4.2e-28 Score=281.05 Aligned_cols=175 Identities=8% Similarity=-0.008 Sum_probs=151.7
Q ss_pred ccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEe-CcCCCCCCcchHHHHHHHHHHHHHHHcCC
Q 003985 561 DEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVA-GYIDVNKSKDREEIAEIEKMHELMKTYKL 639 (781)
Q Consensus 561 ~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG-~g~~~~~~~d~ee~~~~~~l~~li~el~L 639 (781)
++.+|+ ++ .++++++||+.+ ||++.+++++.++.+..|+++|+|+| +|+. .+.++++++++|+
T Consensus 368 r~~~~~--~~-~~~v~~~g~~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~------------~~~l~~~~~~~~l 431 (568)
T 2vsy_A 368 RTQCGL--PE-QGVVLCCFNNSY-KLNPQSMARMLAVLREVPDSVLWLLSGPGEA------------DARLRAFAHAQGV 431 (568)
T ss_dssp TGGGTC--CT-TSCEEEECCCGG-GCCHHHHHHHHHHHHHCTTCEEEEECCSTTH------------HHHHHHHHHHTTC
T ss_pred ccccCC--CC-CCEEEEeCCccc-cCCHHHHHHHHHHHHhCCCcEEEEecCCHHH------------HHHHHHHHHHcCC
Confidence 455776 33 345669999999 99999999999998888999999999 6654 6789999999999
Q ss_pred C-CcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEE-------cCcc-------cccccc
Q 003985 640 D-GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFA-------TCHG-------GPAEII 704 (781)
Q Consensus 640 ~-~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIa-------T~~G-------G~~EiI 704 (781)
. ++|+|+| .++.+++..+++. +|+||+||.+ +||++++|||+||+|||+ |+.| |..|+|
T Consensus 432 ~~~~v~~~g----~~~~~~~~~~~~~-adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v 505 (568)
T 2vsy_A 432 DAQRLVFMP----KLPHPQYLARYRH-ADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMN 505 (568)
T ss_dssp CGGGEEEEC----CCCHHHHHHHGGG-CSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGB
T ss_pred ChhHEEeeC----CCCHHHHHHHHhc-CCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhh
Confidence 8 9999999 5667899999995 9999999999 999999999999999999 9999 999998
Q ss_pred ccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH--HHhcCcchh--hhccchHHHHHh
Q 003985 705 EHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRI--YERLVVSSD--GIVDPSPFVINV 771 (781)
Q Consensus 705 ~dg~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v--~~~ysw~~~--~il~~ye~ll~~ 771 (781)
.+ |+++++++|.+++ .|++.+++|++++++++ .++|||+.+ .+.+.|++++..
T Consensus 506 ~~----------~~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~ 562 (568)
T 2vsy_A 506 VA----------DDAAFVAKAVALA----SDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARR 562 (568)
T ss_dssp CS----------SHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHT
T ss_pred cC----------CHHHHHHHHHHHh----cCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 65 8999999998887 79999999999999998 688999775 455555555543
No 20
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.96 E-value=1.8e-27 Score=271.87 Aligned_cols=312 Identities=11% Similarity=0.029 Sum_probs=210.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHc-CCcEEEEecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHH
Q 003985 406 GFPDFIIGNYSDGNLVASLLAYKM-GITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (781)
Q Consensus 406 ~~pDIIh~~~~~~~lva~llar~~-gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~ 484 (781)
..+|+||+|.+...+++..+++.. ++|++++.|...+. +. .++.+ .....-...+..+|.+...+..
T Consensus 122 ~~~DiV~vHdyhl~~l~~~lr~~~~~~~i~~~~H~pfp~----~~-~~~~l-------p~~~~il~~ll~~d~i~f~~~~ 189 (482)
T 1uqt_A 122 QDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPT----PE-IFNAL-------PTYDTLLEQLCDYDLLGFQTEN 189 (482)
T ss_dssp CTTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCCCC----HH-HHTTS-------TTHHHHHHHHTTSSEEEESSHH
T ss_pred CCCCEEEEECchHHHHHHHHHHhCCCCcEEEEEcCCCCC----HH-HHhhC-------ccHHHHHHhhhccCeEEEECHH
Confidence 367999999987777777766654 79999999975331 11 11111 1101112345567887777655
Q ss_pred HHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcH-----HHHHHhhhhcchhhhccCccc
Q 003985 485 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSE-----KQKRLTALHGSIEQLLFDPEQ 559 (781)
Q Consensus 485 ~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~-----~~~rl~~~~~~i~~~l~~~~~ 559 (781)
....+-....+...... ...+. ....| ...++.+||||+|.+.|.+... ....+
T Consensus 190 ~~~~f~~~~~~~l~~~~-~~~~~-~~~~g---~~~~v~vip~GID~~~f~~~~~~~~~~~~~~l---------------- 248 (482)
T 1uqt_A 190 DRLAFLDCLSNLTRVTT-RSAKS-HTAWG---KAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQL---------------- 248 (482)
T ss_dssp HHHHHHHHHHHHSCEEE-ETTTE-EEETT---EEEEEEECCCCCCHHHHHHHHHSCCCHHHHHH----------------
T ss_pred HHHHHHHHHHHHhCCcc-ccCCe-EEECC---eEEEEEEEeccCCHHHHHHHhcCcchHHHHHH----------------
Confidence 43321111100000000 00010 11112 1357899999999887754211 01111
Q ss_pred cccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCC----CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHH
Q 003985 560 NDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRE----LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK 635 (781)
Q Consensus 560 ~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~----~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~ 635 (781)
++.+| ++++|+++||+++.||++.+++|++++.+.+| +++|++||+... +.-++..+..+++++++.
T Consensus 249 -r~~~~-----~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~---~~~~~~~~l~~~l~~l~~ 319 (482)
T 1uqt_A 249 -KAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSR---GDVQAYQDIRHQLENEAG 319 (482)
T ss_dssp -HHHTT-----TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCS---TTSHHHHHHHHHHHHHHH
T ss_pred -HHHhC-----CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCc---cchHHHHHHHHHHHHHHH
Confidence 12232 57899999999999999999999999877665 478999997432 111233344566667766
Q ss_pred HcC----CC--CcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCC-----cEEEcCcccccccc
Q 003985 636 TYK----LD--GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGL-----PTFATCHGGPAEII 704 (781)
Q Consensus 636 el~----L~--~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~Gl-----PVIaT~~GG~~EiI 704 (781)
+++ .. ..|+|++ +.++.+++..+|+ ++|+||+||.+||||++++||||||+ |+|+|+.+|..+.+
T Consensus 320 ~in~~~g~~~~~~v~~~~---g~v~~~el~~ly~-~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l 395 (482)
T 1uqt_A 320 RINGKYGQLGWTPLYYLN---QHFDRKLLMKIFR-YSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL 395 (482)
T ss_dssp HHHHHHCBTTBCSEEEEC---SCCCHHHHHHHHH-HCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTC
T ss_pred HHhhhcccCCCceEEEeC---CCCCHHHHHHHHH-HccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHh
Confidence 543 22 2377643 2678899999999 49999999999999999999999997 99999988888887
Q ss_pred ccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhc
Q 003985 705 EHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVI 772 (781)
Q Consensus 705 ~dg~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~~~ 772 (781)
. +|++++|+|++++|++|.++++ .+++.++++++++++++ ++|||+ .+++.|.+.+...
T Consensus 396 ~---~g~lv~p~d~~~lA~ai~~lL~---~~~~~r~~~~~~~~~~v-~~~s~~--~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 396 T---SALIVNPYDRDEVAAALDRALT---MSLAERISRHAEMLDVI-VKNDIN--HWQECFISDLKQI 454 (482)
T ss_dssp T---TSEEECTTCHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHH-HHTCHH--HHHHHHHHHHHHS
T ss_pred C---CeEEECCCCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHH-HhCCHH--HHHHHHHHHHHhc
Confidence 2 7999999999999999998872 36788999999999999 569995 4667777777654
No 21
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.95 E-value=5e-28 Score=264.47 Aligned_cols=285 Identities=14% Similarity=0.137 Sum_probs=197.5
Q ss_pred HHHHHHHHHHcCCCceEEEEcCCC-chHHHHHHHHHcCCcEEEEecCCccccCCCChhhHhhhhccccchhhhhHHHHHH
Q 003985 394 EDVGSEITAELQGFPDFIIGNYSD-GNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAM 472 (781)
Q Consensus 394 ~~~~~~i~~~l~~~pDIIh~~~~~-~~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~ 472 (781)
..+.+.+.+. +||+||+|... .++.+.++++..++|++++.|+... + . .+.. +.. ........
T Consensus 85 ~~l~~~l~~~---~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~--~---~-~~~~------~~~-~~~~~~~~ 148 (375)
T 3beo_A 85 EGLDKVMKEA---KPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLRT--W---D-KYSP------YPE-EMNRQLTG 148 (375)
T ss_dssp HHHHHHHHHH---CCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCCC--S---C-TTSS------TTH-HHHHHHHH
T ss_pred HHHHHHHHHh---CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccc--c---c-ccCC------Chh-HhhhhHHh
Confidence 3444555544 89999998753 4666778888999999988776421 0 0 0000 000 01112234
Q ss_pred hhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCC-CcCCCCCCCcHHHHHHhhhhcchh
Q 003985 473 NNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG-ADMDIYFPYSEKQKRLTALHGSIE 551 (781)
Q Consensus 473 ~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnG-vD~~~f~p~~~~~~rl~~~~~~i~ 551 (781)
+.+|.++++|....+.+.+ .|++ ..++.+|+|| +|...+.+........
T Consensus 149 ~~~d~ii~~s~~~~~~~~~--------------------~g~~--~~~i~vi~n~~~d~~~~~~~~~~~~~~-------- 198 (375)
T 3beo_A 149 VMADLHFSPTAKSATNLQK--------------------ENKD--ESRIFITGNTAIDALKTTVKETYSHPV-------- 198 (375)
T ss_dssp HHCSEEEESSHHHHHHHHH--------------------TTCC--GGGEEECCCHHHHHHHHHCCSSCCCHH--------
T ss_pred hhhheeeCCCHHHHHHHHH--------------------cCCC--cccEEEECChhHhhhhhhhhhhhhHHH--------
Confidence 4599999999877552111 1333 5689999999 7865443321000000
Q ss_pred hhccCccccccccCCCCCCCCCEEEEEeeccCC-CChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHH
Q 003985 552 QLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHV-KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKM 630 (781)
Q Consensus 552 ~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~-Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l 630 (781)
++.+ ++++.+++++||+.+. ||++.+++|++++.+..|+++++ +|+|+. . +..+.+
T Consensus 199 ---------~~~~----~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i-~~~g~~------~---~~~~~~ 255 (375)
T 3beo_A 199 ---------LEKL----GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVV-YPVHMN------P---VVRETA 255 (375)
T ss_dssp ---------HHTT----TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEE-EECCSC------H---HHHHHH
T ss_pred ---------HHhc----cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEE-EeCCCC------H---HHHHHH
Confidence 0111 2344567899999876 99999999999998777889865 466654 0 112223
Q ss_pred HHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-ccccccccccCCe
Q 003985 631 HELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATC-HGGPAEIIEHGAS 709 (781)
Q Consensus 631 ~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~-~GG~~EiI~dg~~ 709 (781)
++++ +..++|+|+| .++..++..+|+. +|++|+|| |.+++|||+||+|||+|+ .||..|++.+| +
T Consensus 256 ~~~~---~~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~ 321 (375)
T 3beo_A 256 NDIL---GDYGRIHLIE----PLDVIDFHNVAAR-SYLMLTDS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-T 321 (375)
T ss_dssp HHHH---TTCTTEEEEC----CCCHHHHHHHHHT-CSEEEECC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-S
T ss_pred HHHh---hccCCEEEeC----CCCHHHHHHHHHh-CcEEEECC-----CChHHHHHhcCCCEEEecCCCCCceeecCC-c
Confidence 3322 3346899998 5566789999995 99999998 788999999999999996 59999999888 9
Q ss_pred EEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHH
Q 003985 710 GFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVI 769 (781)
Q Consensus 710 G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll 769 (781)
|+++++ |+++++++|.+++ .|++.+++|++++++.+ +.|+|++ +++.+++++
T Consensus 322 g~~v~~-d~~~la~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~--i~~~~~~~~ 373 (375)
T 3beo_A 322 LKLAGT-DEETIFSLADELL----SDKEAHDKMSKASNPYG-DGRASER--IVEAILKHF 373 (375)
T ss_dssp EEECCS-CHHHHHHHHHHHH----HCHHHHHHHCCCCCTTC-CSCHHHH--HHHHHHHHT
T ss_pred eEEcCC-CHHHHHHHHHHHH----hChHhHhhhhhcCCCCC-CCcHHHH--HHHHHHHHh
Confidence 999987 9999999998887 79999999999988776 5788854 556666654
No 22
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.95 E-value=2.8e-27 Score=236.36 Aligned_cols=187 Identities=17% Similarity=0.212 Sum_probs=161.4
Q ss_pred ecCCCcCCCCC--CCcH-----HHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeecc-CCCChHHHHHHHH
Q 003985 524 VSPGADMDIYF--PYSE-----KQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLD-HVKNMTGLVECYG 595 (781)
Q Consensus 524 IpnGvD~~~f~--p~~~-----~~~rl~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~-~~Kgl~~LieA~~ 595 (781)
||||+|.+.|. |... ... .++.+|+ +++++|+++||+. +.||++.+++++.
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~~~------------------~r~~~~~---~~~~~i~~~G~~~~~~K~~~~li~a~~ 60 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERKKS------------------LLSKFGM---DEGVTFMFIGRFDRGQKGVDVLLKAIE 60 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHHHH------------------HHHHTTC---CSCEEEEEESCBCSSSSCHHHHHHHHH
T ss_pred CCCccChhhccccccccchhhHHHH------------------HHHHcCC---CCCCEEEEeeccccccCCHHHHHHHHH
Confidence 79999999998 7642 111 1134666 3456999999999 9999999999999
Q ss_pred Hhh--ccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEE-eccccCcCChHHHHHHHHccCcEEEEc
Q 003985 596 KNS--QLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRW-IAAQTNRARNGELYRYIADTKGAFVQP 672 (781)
Q Consensus 596 ~l~--~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~f-lG~~~~~v~~~el~~~la~aadvfV~P 672 (781)
++. +..++++|+|+|+++. ++.+.+++++++++ +|+| +| .++.+++..+++. +|++|+|
T Consensus 61 ~l~~~~~~~~~~l~i~G~~~~----------~~~~~l~~~~~~~~---~v~~~~g----~~~~~~~~~~~~~-ad~~l~p 122 (200)
T 2bfw_A 61 ILSSKKEFQEMRFIIIGKGDP----------ELEGWARSLEEKHG---NVKVITE----MLSREFVRELYGS-VDFVIIP 122 (200)
T ss_dssp HHTTSGGGGGEEEEEECCBCH----------HHHHHHHHHHHHCT---TEEEECS----CCCHHHHHHHHTT-CSEEEEC
T ss_pred HHHhhccCCCeEEEEECCCCh----------HHHHHHHHHHHhcC---CEEEEec----cCCHHHHHHHHHH-CCEEEEC
Confidence 997 6678999999999862 23678888899886 8999 99 6778899999995 9999999
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Q 003985 673 AFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKE-NPSHWKKISDGGLKRIY 751 (781)
Q Consensus 673 S~~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~~l~~-dp~~~~~~s~~a~~~v~ 751 (781)
|.+|+||++++|||+||+|||+|+.||..|++ ++.+|++++++|+++++++|.+++ . |++.+++|++++++++.
T Consensus 123 s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~a~~~~~ 197 (200)
T 2bfw_A 123 SYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDPGELANAILKAL----ELSRSDLSKFRENCKKRAM 197 (200)
T ss_dssp CSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEEecCCCHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999998887 7 99999999999999997
Q ss_pred HhcC
Q 003985 752 ERLV 755 (781)
Q Consensus 752 ~~ys 755 (781)
+ ||
T Consensus 198 ~-fs 200 (200)
T 2bfw_A 198 S-FS 200 (200)
T ss_dssp H-TC
T ss_pred h-cC
Confidence 7 86
No 23
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.95 E-value=1e-27 Score=263.09 Aligned_cols=292 Identities=11% Similarity=0.095 Sum_probs=198.4
Q ss_pred HHHHHHHHHHcCCCceEEEEcCC-CchHHHHHHHHHcCCcEEEEecCCccccCCCChhhHhhhhccccchhhhhHHHHHH
Q 003985 394 EDVGSEITAELQGFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAM 472 (781)
Q Consensus 394 ~~~~~~i~~~l~~~pDIIh~~~~-~~~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~ 472 (781)
..+.+.+.+. +||+||+|.. ..++.+.++++..++|++++.|++.... .|..+ ... .......
T Consensus 76 ~~l~~~l~~~---~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~~------~~~~~------~~~-~~~~~~~ 139 (384)
T 1vgv_A 76 EGLKPILAEF---KPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD------LYSPW------PEE-ANRTLTG 139 (384)
T ss_dssp HHHHHHHHHH---CCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSC------TTSST------THH-HHHHHHH
T ss_pred HHHHHHHHHh---CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccccc------ccCCC------chH-hhHHHHH
Confidence 3444555554 8999999976 4466677788889999999988763211 01000 000 0111234
Q ss_pred hhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCC-cCCCCCCCcHH--HHHHhhhhcc
Q 003985 473 NNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA-DMDIYFPYSEK--QKRLTALHGS 549 (781)
Q Consensus 473 ~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGv-D~~~f~p~~~~--~~rl~~~~~~ 549 (781)
+.+|.++++|....+.+. ..|++ ..++.+++||+ |...+.+.... .....
T Consensus 140 ~~~d~ii~~s~~~~~~l~--------------------~~g~~--~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~----- 192 (384)
T 1vgv_A 140 HLAMYHFSPTETSRQNLL--------------------RENVA--DSRIFITGNTVIDALLWVRDQVMSSDKLRS----- 192 (384)
T ss_dssp TTCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHHHHTTTCHHHHH-----
T ss_pred hhccEEEcCcHHHHHHHH--------------------HcCCC--hhhEEEeCChHHHHHHhhhhccccchhhhH-----
Confidence 569999999987755211 12333 56899999995 43211110000 00000
Q ss_pred hhhhccCccccccccC-CCCCCC-CCEEEEEeeccCC-CChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHH
Q 003985 550 IEQLLFDPEQNDEHVG-TLSDRS-KPIVFSMARLDHV-KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAE 626 (781)
Q Consensus 550 i~~~l~~~~~~~~~~g-~l~~~~-k~iIl~vGRL~~~-Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~ 626 (781)
+.++.+| + +++ +.+++++||+... ||++.+++|+.++.+..++++|+++++... +.
T Consensus 193 ---------~~~~~~~~~--~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~----------~~ 251 (384)
T 1vgv_A 193 ---------ELAANYPFI--DPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNP----------NV 251 (384)
T ss_dssp ---------HHHTTCTTC--CTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCH----------HH
T ss_pred ---------HHHHhcccc--CCCCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCH----------HH
Confidence 0113345 4 233 3568899999876 999999999999987778899988644211 12
Q ss_pred HHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc-cccccccc
Q 003985 627 IEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCH-GGPAEIIE 705 (781)
Q Consensus 627 ~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~-GG~~EiI~ 705 (781)
.+.+++++. ..++|+|+| .++..++..+|+. +|++|+|| |.+++|||+||+|||+|+. ||..|++.
T Consensus 252 ~~~l~~~~~---~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~~S-----g~~~lEA~a~G~PvI~~~~~~~~~e~v~ 318 (384)
T 1vgv_A 252 REPVNRILG---HVKNVILID----PQEYLPFVWLMNH-AWLILTDS-----GGIQEEAPSLGKPVLVMRDTTERPEAVT 318 (384)
T ss_dssp HHHHHHHHT---TCTTEEEEC----CCCHHHHHHHHHH-CSEEEESS-----STGGGTGGGGTCCEEEESSCCSCHHHHH
T ss_pred HHHHHHHhh---cCCCEEEeC----CCCHHHHHHHHHh-CcEEEECC-----cchHHHHHHcCCCEEEccCCCCcchhhh
Confidence 344444432 236899988 4556789999995 99999999 4458999999999999986 99999998
Q ss_pred cCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHh
Q 003985 706 HGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINV 771 (781)
Q Consensus 706 dg~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~~ 771 (781)
+| +|+++++ |+++++++|.+++ .||+.+++|++++++.. +.|+|++ +++.++++++.
T Consensus 319 ~g-~g~lv~~-d~~~la~~i~~ll----~d~~~~~~~~~~~~~~~-~~~~~~~--i~~~~~~~~~~ 375 (384)
T 1vgv_A 319 AG-TVRLVGT-DKQRIVEEVTRLL----KDENEYQAMSRAHNPYG-DGQACSR--ILEALKNNRIS 375 (384)
T ss_dssp HT-SEEEECS-SHHHHHHHHHHHH----HCHHHHHHHHSSCCTTC-CSCHHHH--HHHHHHHTCCC
T ss_pred CC-ceEEeCC-CHHHHHHHHHHHH----hChHHHhhhhhccCCCc-CCCHHHH--HHHHHHHHHHh
Confidence 88 9999988 9999999998887 79999999999887765 5777754 45555555543
No 24
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.93 E-value=1.3e-25 Score=217.92 Aligned_cols=160 Identities=14% Similarity=0.195 Sum_probs=142.1
Q ss_pred CCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccC
Q 003985 572 KPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTN 651 (781)
Q Consensus 572 k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~ 651 (781)
+++|+|+||+.+.||++.+++|+.+++ ..++++|+|+|+|+. .+.++++++++++ +|+| |
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~-~~~~~~l~i~G~g~~------------~~~~~~~~~~~~~--~v~~-g---- 61 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK-YKQDIVLLLKGKGPD------------EKKIKLLAQKLGV--KAEF-G---- 61 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT-TGGGEEEEEECCSTT------------HHHHHHHHHHHTC--EEEC-C----
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc-cCCCeEEEEEeCCcc------------HHHHHHHHHHcCC--eEEE-e----
Confidence 568999999999999999999999985 347999999999977 6788899999987 7999 9
Q ss_pred cCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCC-cEEE-cCccccccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 652 RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGL-PTFA-TCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 652 ~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~Gl-PVIa-T~~GG~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.++.+++..+++. +|++|+||.+|+||++++|||+||+ |||+ ++.||..|++.++.+ +++++|+++++++|.+++
T Consensus 62 ~~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~i~~l~ 138 (166)
T 3qhp_A 62 FVNSNELLEILKT-CTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LFEPNNAKDLSAKIDWWL 138 (166)
T ss_dssp CCCHHHHHHHHTT-CSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EECTTCHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHh-CCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EEcCCCHHHHHHHHHHHH
Confidence 6778899999995 9999999999999999999999998 9999 568899999987655 889999999999998887
Q ss_pred HhccCCHHHHHHHHHHHHHHHHHhcCcchh
Q 003985 730 GKCKENPSHWKKISDGGLKRIYERLVVSSD 759 (781)
Q Consensus 730 ~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~ 759 (781)
.|++.++++++++++++ ++|||+.+
T Consensus 139 ----~~~~~~~~~~~~~~~~~-~~~s~~~~ 163 (166)
T 3qhp_A 139 ----ENKLERERMQNEYAKSA-LNYTLENS 163 (166)
T ss_dssp ----HCHHHHHHHHHHHHHHH-HHHC----
T ss_pred ----hCHHHHHHHHHHHHHHH-HHCChhhh
Confidence 79999999999999999 89999765
No 25
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.93 E-value=1.4e-24 Score=246.65 Aligned_cols=322 Identities=12% Similarity=0.034 Sum_probs=219.3
Q ss_pred HHHHHHHHHHcC-CCceEEEEcCCCchHHHHHHHHH-cCCcEEEEecCCccccCCCChhhHhhhhccccchh--hhhHHH
Q 003985 394 EDVGSEITAELQ-GFPDFIIGNYSDGNLVASLLAYK-MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSC--QFTADL 469 (781)
Q Consensus 394 ~~~~~~i~~~l~-~~pDIIh~~~~~~~lva~llar~-~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~--~~~~e~ 469 (781)
......+....+ ..-|+|..|.+...+++..+.++ .+.++.+..|..++. +.+ + +.+. ....-+
T Consensus 135 ~~fA~~i~~~~~~~~~D~VwVhDYhL~llp~~lR~~~~~~~igfFlHiPfPs----~e~-f-------~~Lp~~~r~ell 202 (496)
T 3t5t_A 135 RDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPS----ADY-W-------RILPKEIRTGIL 202 (496)
T ss_dssp HHHHHHHHHHTTTCSSCEEEEESGGGTTHHHHHHHHCTTSCEEEECCSCCCC----HHH-H-------TTSCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCEEEEeCccHhHHHHHHHhhCCCCeEEEEEcCCCCC----HHH-H-------hhCcHhHHHHHH
Confidence 334444444433 35789999999987777777665 468999999976432 221 1 1111 112234
Q ss_pred HHHhhCCEEEecCHHHHhhccccccccc-cccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhc
Q 003985 470 IAMNNADFIITSTYQEIAGTKNTVGQYE-SHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHG 548 (781)
Q Consensus 470 ~a~~~AD~IIt~S~~~~~~~k~~v~qy~-s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~ 548 (781)
..|-.+|.|...|+..+..+-+...... ....-...+ .....|. ..++.++|+|||.+.|.+......
T Consensus 203 ~gll~~DligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~-~v~~~gr---~v~v~viP~GID~~~f~~~~~~~~------- 271 (496)
T 3t5t_A 203 HGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAM-TVEWRGH---RTRLRTMPLGYSPLTLDGRNPQLP------- 271 (496)
T ss_dssp HHHTTSSEEEESSHHHHHHHHHHHHHHCTTCEEETTTT-EEEETTE---EEEEEECCCCBCGGGC----CCCC-------
T ss_pred HHHHhCCEEEEecHHHHHHHHHHHHHHhcCCcccccCC-eEEECCE---EEEEEEeccEeCHHHhchhhHHHH-------
Confidence 5788999999999877653322211110 000000000 0011121 247789999999999876432000
Q ss_pred chhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCC---eEEEEEeCcCCCCCCcchHHHH
Q 003985 549 SIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLREL---VNLVVVAGYIDVNKSKDREEIA 625 (781)
Q Consensus 549 ~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~---~~LvIVG~g~~~~~~~d~ee~~ 625 (781)
...++.+| ++++|+++||+++.||+..+++|| ++.+.+|+ +.|++||.... +..++..+
T Consensus 272 ---------~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr---~~~~~y~~ 333 (496)
T 3t5t_A 272 ---------EGIEEWAD-----GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNR---LYVPANAD 333 (496)
T ss_dssp ---------TTHHHHHT-----TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCC---TTSHHHHH
T ss_pred ---------HHHHHHhC-----CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCC---CCchHHHH
Confidence 01112233 578999999999999999999999 88776665 67888885422 12234455
Q ss_pred HHHHHHHHHHHcC----CCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcC---CcEEEcCcc
Q 003985 626 EIEKMHELMKTYK----LDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCG---LPTFATCHG 698 (781)
Q Consensus 626 ~~~~l~~li~el~----L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~G---lPVIaT~~G 698 (781)
..+++++++.+.+ .. .|+|+| .++.+++..+|+ +||+||+||.+||||++++|||||| .|+|+|..+
T Consensus 334 l~~~l~~lv~~in~~~g~~-~V~f~g----~v~~~el~aly~-~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~a 407 (496)
T 3t5t_A 334 YVHRVETAVAEANAELGSD-TVRIDN----DNDVNHTIACFR-RADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETC 407 (496)
T ss_dssp HHHHHHHHHHHHHHHHCTT-SEEEEE----CCCHHHHHHHHH-HCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTB
T ss_pred HHHHHHHHHHHhccccCCc-CEEEeC----CCCHHHHHHHHH-hccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCC
Confidence 5667777776653 22 699999 577899999999 5999999999999999999999997 899999999
Q ss_pred ccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHH
Q 003985 699 GPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVIN 770 (781)
Q Consensus 699 G~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~ 770 (781)
|..+.+ +.+|++++|+|++++|++|.++++ .+++.++++.+++++++ .++++ ..+++.|.+-+.
T Consensus 408 Ga~~~l--~~~allVnP~D~~~lA~AI~~aL~---m~~~er~~r~~~~~~~V-~~~d~--~~W~~~fl~~L~ 471 (496)
T 3t5t_A 408 GAAEVL--GEYCRSVNPFDLVEQAEAISAALA---AGPRQRAEAAARRRDAA-RPWTL--EAWVQAQLDGLA 471 (496)
T ss_dssp TTHHHH--GGGSEEECTTBHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHH-TTCBH--HHHHHHHHHHHH
T ss_pred CCHHHh--CCCEEEECCCCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHH-HHCCH--HHHHHHHHHHHh
Confidence 999988 347999999999999999998884 56788999999999998 56665 445555555543
No 26
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.91 E-value=3.1e-24 Score=235.22 Aligned_cols=271 Identities=12% Similarity=0.094 Sum_probs=181.7
Q ss_pred CCceEEEEcCCCc-hHHHHHHHHHcCCcEEEEecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHH
Q 003985 406 GFPDFIIGNYSDG-NLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (781)
Q Consensus 406 ~~pDIIh~~~~~~-~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~ 484 (781)
.+||+||+|.... ++.+.++++..|+|++++.|+... +. .+.. +.. ........+.+|.++++|..
T Consensus 90 ~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~--~~----~~~~------~~~-~~~~~~~~~~~~~~~~~s~~ 156 (376)
T 1v4v_A 90 MGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRS--GN----LKEP------FPE-EANRRLTDVLTDLDFAPTPL 156 (376)
T ss_dssp TTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCC--SC----TTSS------TTH-HHHHHHHHHHCSEEEESSHH
T ss_pred cCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEeCCCcc--cc----ccCC------Cch-HHHHHHHHHHhceeeCCCHH
Confidence 3899999987644 556677888999998754443311 00 0000 000 01122445679999999987
Q ss_pred HHhhccccccccccccccccccceeeeccCCCCCCceEEecCCC-cCCCCCCCcHHHHHHhhhhcchhhhccCccccccc
Q 003985 485 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA-DMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEH 563 (781)
Q Consensus 485 ~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGv-D~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~~ 563 (781)
..+.+.+ .|++ ..++.+++|++ |...+ ...+ ...+..
T Consensus 157 ~~~~l~~--------------------~g~~--~~ki~vi~n~~~d~~~~-----~~~~---------------~~~~~~ 194 (376)
T 1v4v_A 157 AKANLLK--------------------EGKR--EEGILVTGQTGVDAVLL-----AAKL---------------GRLPEG 194 (376)
T ss_dssp HHHHHHT--------------------TTCC--GGGEEECCCHHHHHHHH-----HHHH---------------CCCCTT
T ss_pred HHHHHHH--------------------cCCC--cceEEEECCchHHHHhh-----hhhh---------------hHHHHh
Confidence 6542111 1443 56899999864 42111 0000 001111
Q ss_pred cCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEE-eCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCc
Q 003985 564 VGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVV-AGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQ 642 (781)
Q Consensus 564 ~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIV-G~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~ 642 (781)
+ ++++++++++||+...||++.+++|++++.+..++++++++ |+++. ..+.+++++. ..++
T Consensus 195 ~----~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~~-----------~~~~l~~~~~---~~~~ 256 (376)
T 1v4v_A 195 L----PEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPV-----------VREAVFPVLK---GVRN 256 (376)
T ss_dssp C----CSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCHH-----------HHHHHHHHHT---TCTT
T ss_pred c----CCCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCHH-----------HHHHHHHHhc---cCCC
Confidence 1 23445678899998888999999999999877788998886 54431 2345555543 2468
Q ss_pred EEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc-CccccccccccCCeEEEECCCCHHHH
Q 003985 643 FRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT-CHGGPAEIIEHGASGFHIDPYHPDQA 721 (781)
Q Consensus 643 V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT-~~GG~~EiI~dg~~G~lv~p~d~e~l 721 (781)
|+|+| .+...++..+|+. +|++|.|| | |+ ++|||+||+|||++ +.||..+++.++ +|++++ .|++++
T Consensus 257 v~~~g----~~g~~~~~~~~~~-ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~-~d~~~l 324 (376)
T 1v4v_A 257 FVLLD----PLEYGSMAALMRA-SLLLVTDS--G--GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLAG-TDPEGV 324 (376)
T ss_dssp EEEEC----CCCHHHHHHHHHT-EEEEEESC--H--HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEECC-SCHHHH
T ss_pred EEEEC----CCCHHHHHHHHHh-CcEEEECC--c--CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEECC-CCHHHH
Confidence 99997 4445688999994 99999999 2 44 88999999999998 578999987655 899996 499999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchh--hhccchHHHHH
Q 003985 722 AELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSD--GIVDPSPFVIN 770 (781)
Q Consensus 722 A~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~--~il~~ye~ll~ 770 (781)
+++|.+++ .|++.+++|++++ +.|.|... .+++.+++++.
T Consensus 325 a~~i~~ll----~d~~~~~~~~~~~-----~~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 325 YRVVKGLL----ENPEELSRMRKAK-----NPYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp HHHHHHHH----TCHHHHHHHHHSC-----CSSCCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHH----hChHhhhhhcccC-----CCCCCChHHHHHHHHHHHHhc
Confidence 99998887 8999999998643 55766433 55556666553
No 27
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.90 E-value=1.6e-23 Score=231.83 Aligned_cols=206 Identities=11% Similarity=0.120 Sum_probs=159.4
Q ss_pred HHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcc
Q 003985 470 IAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGS 549 (781)
Q Consensus 470 ~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~ 549 (781)
..++.+|.|++.|....+.+.+ .|+ . ++.|++|+. |.+.... +
T Consensus 149 ~~~~~~d~ii~~S~~~~~~l~~--------------------~g~---~-ki~vi~n~~----f~~~~~~--~------- 191 (374)
T 2xci_A 149 ILSKKFDLIIMRTQEDVEKFKT--------------------FGA---K-RVFSCGNLK----FICQKGK--G------- 191 (374)
T ss_dssp HHHTTCSEEEESCHHHHHHHHT--------------------TTC---C-SEEECCCGG----GCCCCCS--C-------
T ss_pred HHHHhCCEEEECCHHHHHHHHH--------------------cCC---C-eEEEcCCCc----cCCCcCh--h-------
Confidence 4678999999999887652211 133 2 899999973 2121100 0
Q ss_pred hhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHH
Q 003985 550 IEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEK 629 (781)
Q Consensus 550 i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~ 629 (781)
.. + .++++++.|+ ..||++.+++|++++.+..|+++|+|||+|+. ..++
T Consensus 192 ------------~~--l----~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~-----------~~~~ 240 (374)
T 2xci_A 192 ------------IK--L----KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHIE-----------NAKI 240 (374)
T ss_dssp ------------CC--C----SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGG-----------GHHH
T ss_pred ------------hh--h----cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCHH-----------HHHH
Confidence 00 1 1267776665 46899999999999988889999999999875 1257
Q ss_pred HHHHHHHcCCC--------CcEEEeccccCcCChHHHHHHHHccCcEEEEcCC-CCCCcHHHHHHHHcCCcEEEc-Cccc
Q 003985 630 MHELMKTYKLD--------GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF-YEAFGLTVVEAMTCGLPTFAT-CHGG 699 (781)
Q Consensus 630 l~~li~el~L~--------~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~-~E~fGltvlEAMa~GlPVIaT-~~GG 699 (781)
++++++++++. ++|.+.|.+ +++..+|+. +|++++||. .|++|++++||||||+|||++ +.+|
T Consensus 241 l~~~~~~~gl~~~~~~~~~~~v~~~~~~------~dl~~~y~~-aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~ 313 (374)
T 2xci_A 241 FEKKARDFGFKTSFFENLEGDVILVDRF------GILKELYPV-GKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHK 313 (374)
T ss_dssp HHHHHHHTTCCEEETTCCCSSEEECCSS------SCHHHHGGG-EEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTT
T ss_pred HHHHHHHCCCceEEecCCCCcEEEECCH------HHHHHHHHh-CCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccC
Confidence 88889999886 468887732 468888984 999888764 577899999999999999985 7899
Q ss_pred cccccccC-CeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcC
Q 003985 700 PAEIIEHG-ASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLV 755 (781)
Q Consensus 700 ~~EiI~dg-~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ys 755 (781)
..|++++. .+|++++++|+++++++|.+++ +| +.+++|+++|++++.+++.
T Consensus 314 ~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll----~d-~~r~~mg~~ar~~~~~~~g 365 (374)
T 2xci_A 314 VNDLKEFLEKEGAGFEVKNETELVTKLTELL----SV-KKEIKVEEKSREIKGCYLE 365 (374)
T ss_dssp SHHHHHHHHHTTCEEECCSHHHHHHHHHHHH----HS-CCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCEEEeCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHhccc
Confidence 99988763 5788898999999999999888 68 8999999999999977653
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.90 E-value=1.8e-23 Score=206.30 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=134.2
Q ss_pred CCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHH--HcCCCCcEEEe
Q 003985 569 DRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK--TYKLDGQFRWI 646 (781)
Q Consensus 569 ~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~--el~L~~~V~fl 646 (781)
+.++++|+|+||+.+.||++.+++++.++ ++++|+|+|+++. .+.++++++ ++++.++|+|+
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~------------~~~l~~~~~~~~~~l~~~v~~~ 83 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSK------------GDHAERYARKIMKIAPDNVKFL 83 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCT------------TSTHHHHHHHHHHHSCTTEEEE
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCcc------------HHHHHHHHHhhhcccCCcEEEe
Confidence 56788999999999999999999999987 5799999999876 346777788 78899999999
Q ss_pred ccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHH
Q 003985 647 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMA 726 (781)
Q Consensus 647 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~G~lv~p~d~e~lA~~I~ 726 (781)
| .++.+++..+++. +|++|+||..|+||++++|||+||+|||+|+.|+..|++.++.+|+++ +.|+++++++|.
T Consensus 84 g----~~~~~e~~~~~~~-adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~ 157 (177)
T 2f9f_A 84 G----SVSEEELIDLYSR-CKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NADVNEIIDAMK 157 (177)
T ss_dssp E----SCCHHHHHHHHHH-CSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSCHHHHHHHHH
T ss_pred C----CCCHHHHHHHHHh-CCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCCHHHHHHHHH
Confidence 9 6778899999995 999999999999999999999999999999999999999999999999 999999999998
Q ss_pred HHHHhccCCHHH-HHHHHHH
Q 003985 727 DFFGKCKENPSH-WKKISDG 745 (781)
Q Consensus 727 ~~l~~l~~dp~~-~~~~s~~ 745 (781)
+++ .|++. +++++++
T Consensus 158 ~l~----~~~~~~~~~~~~~ 173 (177)
T 2f9f_A 158 KVS----KNPDKFKKDCFRR 173 (177)
T ss_dssp HHH----HCTTTTHHHHHHH
T ss_pred HHH----hCHHHHHHHHHHH
Confidence 887 67664 4444333
No 29
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.81 E-value=3.2e-19 Score=194.96 Aligned_cols=251 Identities=11% Similarity=0.028 Sum_probs=175.7
Q ss_pred CCCceEEEEcCCCc---hHHHHHHHH--HcCCcEEEEecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEE
Q 003985 405 QGFPDFIIGNYSDG---NLVASLLAY--KMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFII 479 (781)
Q Consensus 405 ~~~pDIIh~~~~~~---~lva~llar--~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~II 479 (781)
-.++|+|+.+++.. .+.+.++.+ +.++|+++.+|++++.... ...+ .. ..|...++.||.||
T Consensus 72 ~~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~---------~~~~--~~--~~E~~~y~~aD~Ii 138 (339)
T 3rhz_A 72 LRHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFS---------GNFY--LM--DRTIAYYNKADVVV 138 (339)
T ss_dssp CCTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCG---------GGGG--GH--HHHHHHHTTCSEEE
T ss_pred CCCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCc---------cchh--hH--HHHHHHHHHCCEEE
Confidence 35899999988764 233445555 3489999999999764432 1111 11 24788999999999
Q ss_pred ecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccc
Q 003985 480 TSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQ 559 (781)
Q Consensus 480 t~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~ 559 (781)
+.|+...+.+. .+|++ ..++.++++. |... +.+
T Consensus 139 ~~S~~~~~~l~--------------------~~G~~--~~ki~~~~~~-~~~~--~~~---------------------- 171 (339)
T 3rhz_A 139 APSQKMIDKLR--------------------DFGMN--VSKTVVQGMW-DHPT--QAP---------------------- 171 (339)
T ss_dssp ESCHHHHHHHH--------------------HTTCC--CSEEEECCSC-CCCC--CCC----------------------
T ss_pred ECCHHHHHHHH--------------------HcCCC--cCceeecCCC-CccC--ccc----------------------
Confidence 99998765322 12443 3566444332 2110 100
Q ss_pred cccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCC
Q 003985 560 NDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL 639 (781)
Q Consensus 560 ~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L 639 (781)
... +.++++|+|+||++....+. +..++++|+|+|+|+. . .+
T Consensus 172 ----~~~--~~~~~~i~yaG~l~k~~~L~----------~l~~~~~f~ivG~G~~------------~----------~l 213 (339)
T 3rhz_A 172 ----MFP--AGLKREIHFPGNPERFSFVK----------EWKYDIPLKVYTWQNV------------E----------LP 213 (339)
T ss_dssp ----CCC--CEEEEEEEECSCTTTCGGGG----------GCCCSSCEEEEESCCC------------C----------CC
T ss_pred ----ccc--cCCCcEEEEeCCcchhhHHH----------hCCCCCeEEEEeCCcc------------c----------Cc
Confidence 001 23567899999999633322 1247899999999986 1 24
Q ss_pred CCcEEEeccccCcCChHHHHHHHHccCcEEEEcCC-------CCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEE
Q 003985 640 DGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF-------YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFH 712 (781)
Q Consensus 640 ~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~-------~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~G~l 712 (781)
+ +|.|+| .++.+++..+++. +|+.+.+.. ...+|.+++||||||+|||+++.|+..++|+++.+|+.
T Consensus 214 ~-nV~f~G----~~~~~el~~~l~~-~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~ 287 (339)
T 3rhz_A 214 Q-NVHKIN----YRPDEQLLMEMSQ-GGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLGWI 287 (339)
T ss_dssp T-TEEEEE----CCCHHHHHHHHHT-EEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEE
T ss_pred C-CEEEeC----CCCHHHHHHHHHh-CCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEE
Confidence 4 899999 7888999999984 677666511 13569999999999999999999999999999999999
Q ss_pred ECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchh---hhccchHHH
Q 003985 713 IDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSD---GIVDPSPFV 768 (781)
Q Consensus 713 v~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~---~il~~ye~l 768 (781)
++ +.++++++|..+ +++.+++|++++++.+ ++++|... ++.+++.++
T Consensus 288 ~~--~~~e~~~~i~~l------~~~~~~~m~~na~~~a-~~~~~~~f~k~~l~~~~~~~ 337 (339)
T 3rhz_A 288 VK--DVEEAIMKVKNV------NEDEYIELVKNVRSFN-PILRKGFFTRRLLTESVFQA 337 (339)
T ss_dssp ES--SHHHHHHHHHHC------CHHHHHHHHHHHHHHT-HHHHTTHHHHHHHHHHHHHH
T ss_pred eC--CHHHHHHHHHHh------CHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHh
Confidence 97 688888888642 4778999999999886 56887665 444444444
No 30
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.81 E-value=1.2e-19 Score=200.90 Aligned_cols=162 Identities=12% Similarity=0.075 Sum_probs=123.6
Q ss_pred CCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccc
Q 003985 570 RSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQ 649 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~ 649 (781)
+.+.++++.|++. .|+...+.+++..+.+. ++++++++++.... +.+. ++.++|++.|+.
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~--~~~~~~~~g~~~~~-----------~~l~------~~~~~v~~~~~~ 300 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAGL--DADVLVASGPSLDV-----------SGLG------EVPANVRLESWV 300 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHTS--SSEEEEECCSSCCC-----------TTCC------CCCTTEEEESCC
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHcC--CCEEEEEECCCCCh-----------hhhc------cCCCcEEEeCCC
Confidence 3445678889986 77888888887777653 56777777654310 0111 356789999954
Q ss_pred cCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCCeEEEECCC--CHHHHHH
Q 003985 650 TNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIEHGASGFHIDPY--HPDQAAE 723 (781)
Q Consensus 650 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~G----G~~EiI~dg~~G~lv~p~--d~e~lA~ 723 (781)
+ +..+++ .+|++|.++ .+.+++|||+||+|+|++..+ +..+.+.+++.|+++++. |++++++
T Consensus 301 ----~---~~~~l~-~ad~~v~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ 368 (412)
T 3otg_A 301 ----P---QAALLP-HVDLVVHHG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSG 368 (412)
T ss_dssp ----C---HHHHGG-GCSEEEESC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHH
T ss_pred ----C---HHHHHh-cCcEEEECC----chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHH
Confidence 2 566777 599999876 248999999999999996544 478888888999999987 8999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHH
Q 003985 724 LMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVIN 770 (781)
Q Consensus 724 ~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~ 770 (781)
+|.+++ .|++.++++++.+++.. +.++| ..+++.+++++.
T Consensus 369 ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~~ 408 (412)
T 3otg_A 369 AAKRLL----AEESYRAGARAVAAEIA-AMPGP--DEVVRLLPGFAS 408 (412)
T ss_dssp HHHHHH----HCHHHHHHHHHHHHHHH-HSCCH--HHHHTTHHHHHC
T ss_pred HHHHHH----hCHHHHHHHHHHHHHHh-cCCCH--HHHHHHHHHHhc
Confidence 998887 79999999999988877 66777 457788888763
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.76 E-value=1.5e-16 Score=175.33 Aligned_cols=346 Identities=15% Similarity=0.071 Sum_probs=201.4
Q ss_pred CceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCCCCCCCccCcceeee
Q 003985 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV 356 (781)
Q Consensus 277 ~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p~~~~~~~~~~~e~v 356 (781)
|..||+|.+ | -|||-..-.+ .++++|.++||+|. ++|....- ..+.+
T Consensus 1 M~~~i~i~~--G-----------GTgGHi~pal--------ala~~L~~~g~~V~----~vg~~~g~--------e~~~v 47 (365)
T 3s2u_A 1 MKGNVLIMA--G-----------GTGGHVFPAL--------ACAREFQARGYAVH----WLGTPRGI--------ENDLV 47 (365)
T ss_dssp --CEEEEEC--C-----------SSHHHHHHHH--------HHHHHHHHTTCEEE----EEECSSST--------HHHHT
T ss_pred CCCcEEEEc--C-----------CCHHHHHHHH--------HHHHHHHhCCCEEE----EEECCchH--------hhchh
Confidence 556888764 1 2677433333 68888999999998 88754210 00001
Q ss_pred cCCCCeEEEEeccCCCcc-cccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcEEE
Q 003985 357 SGTEHTHILRVPFRSEKG-ILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCT 435 (781)
Q Consensus 357 ~~~~~~~I~rvP~~~~~~-~~~~~isr~~i~~yl~~f~~~~~~~i~~~l~~~pDIIh~~~~~~~lva~llar~~gvp~v~ 435 (781)
+ ..+..+..+|.....+ ...+++. ..+..+.. ...+.+.+++. +||+|++.....+..+.++++.+|+|+++
T Consensus 48 ~-~~g~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~l~~~---~PDvVi~~g~~~s~p~~laA~~~~iP~vi 120 (365)
T 3s2u_A 48 P-KAGLPLHLIQVSGLRGKGLKSLVK--APLELLKS-LFQALRVIRQL---RPVCVLGLGGYVTGPGGLAARLNGVPLVI 120 (365)
T ss_dssp G-GGTCCEEECC----------------CHHHHHHH-HHHHHHHHHHH---CCSEEEECSSSTHHHHHHHHHHTTCCEEE
T ss_pred h-hcCCcEEEEECCCcCCCCHHHHHH--HHHHHHHH-HHHHHHHHHhc---CCCEEEEcCCcchHHHHHHHHHcCCCEEE
Confidence 1 1234555555433211 0001110 11222222 22334445554 99999999888888888899999999885
Q ss_pred EecCCccccCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCC
Q 003985 436 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 515 (781)
Q Consensus 436 t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~ 515 (781)
.-.+..+ . ...++..+.|+.|.+..+.. +
T Consensus 121 he~n~~~------G----------------~~nr~l~~~a~~v~~~~~~~----------~------------------- 149 (365)
T 3s2u_A 121 HEQNAVA------G----------------TANRSLAPIARRVCEAFPDT----------F------------------- 149 (365)
T ss_dssp EECSSSC------C----------------HHHHHHGGGCSEEEESSTTS----------S-------------------
T ss_pred Eecchhh------h----------------hHHHhhccccceeeeccccc----------c-------------------
Confidence 3222111 0 01223455678776654321 0
Q ss_pred CCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCE-EEEEeeccCCCChHHHHHHH
Q 003985 516 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPI-VFSMARLDHVKNMTGLVECY 594 (781)
Q Consensus 516 ~f~~k~~VIpnGvD~~~f~p~~~~~~rl~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~i-Il~vGRL~~~Kgl~~LieA~ 594 (781)
....++.++.|.+..+.+.... ...++ +++++. +++.|+++..+..+.+.+++
T Consensus 150 ~~~~k~~~~g~pvr~~~~~~~~------------------------~~~~~--~~~~~~ilv~gGs~g~~~~~~~~~~al 203 (365)
T 3s2u_A 150 PASDKRLTTGNPVRGELFLDAH------------------------ARAPL--TGRRVNLLVLGGSLGAEPLNKLLPEAL 203 (365)
T ss_dssp CC---CEECCCCCCGGGCCCTT------------------------SSCCC--TTSCCEEEECCTTTTCSHHHHHHHHHH
T ss_pred cCcCcEEEECCCCchhhccchh------------------------hhccc--CCCCcEEEEECCcCCccccchhhHHHH
Confidence 0134667777777655443221 12333 344555 55557888888888888999
Q ss_pred HHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCC
Q 003985 595 GKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF 674 (781)
Q Consensus 595 ~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~ 674 (781)
..+... .++.++++++..+ .+.+.+..++.+ .++++.++.+ ++..+|+ .+|++|.-+
T Consensus 204 ~~l~~~-~~~~vi~~~G~~~------------~~~~~~~~~~~~--~~~~v~~f~~------dm~~~l~-~aDlvI~ra- 260 (365)
T 3s2u_A 204 AQVPLE-IRPAIRHQAGRQH------------AEITAERYRTVA--VEADVAPFIS------DMAAAYA-WADLVICRA- 260 (365)
T ss_dssp HTSCTT-TCCEEEEECCTTT------------HHHHHHHHHHTT--CCCEEESCCS------CHHHHHH-HCSEEEECC-
T ss_pred Hhcccc-cceEEEEecCccc------------cccccceecccc--cccccccchh------hhhhhhc-cceEEEecC-
Confidence 887643 3455555544333 345555556655 4577888654 3677888 499999764
Q ss_pred CCCCcHHHHHHHHcCCcEEEcCcccc--------ccccccCCeEEEECCC--CHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 003985 675 YEAFGLTVVEAMTCGLPTFATCHGGP--------AEIIEHGASGFHIDPY--HPDQAAELMADFFGKCKENPSHWKKISD 744 (781)
Q Consensus 675 ~E~fGltvlEAMa~GlPVIaT~~GG~--------~EiI~dg~~G~lv~p~--d~e~lA~~I~~~l~~l~~dp~~~~~~s~ 744 (781)
-+.|+.|+|++|+|+|....++. ++.+.+.+.|++++.. +++.++++|.+++ .||+.+++|++
T Consensus 261 ---G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll----~d~~~~~~m~~ 333 (365)
T 3s2u_A 261 ---GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVL----MHPETLRSMAD 333 (365)
T ss_dssp ---CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHH----HCTHHHHHHHH
T ss_pred ---CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHH----CCHHHHHHHHH
Confidence 37899999999999998765432 3455666789998755 5889999998888 89999999999
Q ss_pred HHHHHHHHhcCcchhhhccchHHHHHhc
Q 003985 745 GGLKRIYERLVVSSDGIVDPSPFVINVI 772 (781)
Q Consensus 745 ~a~~~v~~~ysw~~~~il~~ye~ll~~~ 772 (781)
++++.... . ....+++..+++...+
T Consensus 334 ~a~~~~~~-~--aa~~ia~~i~~larG~ 358 (365)
T 3s2u_A 334 QARSLAKP-E--ATRTVVDACLEVARGL 358 (365)
T ss_dssp HHHHTCCT-T--HHHHHHHHHHHHC---
T ss_pred HHHhcCCc-c--HHHHHHHHHHHHHccc
Confidence 99876421 1 1225666666665443
No 32
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.76 E-value=5.3e-17 Score=181.24 Aligned_cols=161 Identities=12% Similarity=0.051 Sum_probs=112.4
Q ss_pred CCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEE-EEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 003985 570 RSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNL-VVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 648 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~L-vIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~ 648 (781)
++.++++++|++. .++...+.+++..+.+. +++++ +++|+++. .+.+ + .+.++|++.|+
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~G~~~~------------~~~l----~--~~~~~v~~~~~ 290 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRAFGNL-PGWHLVLQIGRKVT------------PAEL----G--ELPDNVEVHDW 290 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHHHTTC-TTEEEEEECC---C------------GGGG----C--SCCTTEEEESS
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHHHhcC-CCeEEEEEeCCCCC------------hHHh----c--cCCCCeEEEec
Confidence 3456788999998 55655555555545432 46787 56787754 1111 1 25678999995
Q ss_pred ccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCCeEEEECCC--CHHHHH
Q 003985 649 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--HPDQAA 722 (781)
Q Consensus 649 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG----~~EiI~dg~~G~lv~p~--d~e~lA 722 (781)
. +.. .+++ .+|++|..+- +.+++|||++|+|+|++..++ ..+.+.+.+.|+.++++ |+++++
T Consensus 291 ~----~~~---~~l~-~ad~~v~~~G----~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~ 358 (430)
T 2iyf_A 291 V----PQL---AILR-QADLFVTHAG----AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLR 358 (430)
T ss_dssp C----CHH---HHHT-TCSEEEECCC----HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHH
T ss_pred C----CHH---HHhh-ccCEEEECCC----ccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHH
Confidence 4 333 5666 5999999752 379999999999999997655 46667777899999887 889999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHH
Q 003985 723 ELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVI 769 (781)
Q Consensus 723 ~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll 769 (781)
++|.+++ .|++.++++++.+++.. +.++|+. +++.+++++
T Consensus 359 ~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~i~~~~ 398 (430)
T 2iyf_A 359 ETALALV----DDPEVARRLRRIQAEMA-QEGGTRR--AADLIEAEL 398 (430)
T ss_dssp HHHHHHH----HCHHHHHHHHHHHHHHH-HHCHHHH--HHHHHHTTS
T ss_pred HHHHHHH----cCHHHHHHHHHHHHHHH-hcCcHHH--HHHHHHHHh
Confidence 9998887 79999999999888766 4566644 444444444
No 33
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.73 E-value=1.5e-17 Score=183.11 Aligned_cols=161 Identities=11% Similarity=0.010 Sum_probs=119.9
Q ss_pred CCCEEEEEeeccCCCCh-HHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccc
Q 003985 571 SKPIVFSMARLDHVKNM-TGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQ 649 (781)
Q Consensus 571 ~k~iIl~vGRL~~~Kgl-~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~ 649 (781)
.+.+++++|++...|+. ..+++++.+. +..|+++++++|++.. .+.+. ++.++|++.|+
T Consensus 218 ~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~------------~~~l~------~~~~~v~~~~~- 277 (391)
T 3tsa_A 218 ARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEH------------RALLT------DLPDNARIAES- 277 (391)
T ss_dssp SEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGG------------GGGCT------TCCTTEEECCS-
T ss_pred CCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcc------------hhhcc------cCCCCEEEecc-
Confidence 34567778999775555 7777777776 6667899999998854 11111 35678999994
Q ss_pred cCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEE----cCccccccccccCCeEEEECC----CCHHHH
Q 003985 650 TNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFA----TCHGGPAEIIEHGASGFHIDP----YHPDQA 721 (781)
Q Consensus 650 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIa----T~~GG~~EiI~dg~~G~lv~p----~d~e~l 721 (781)
++..+++ + ++|++|.. +.+.+++|||++|+|+|+ ++..+..+.+.+.+.|..+++ .|++++
T Consensus 278 ---~~~~~ll---~-~ad~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l 346 (391)
T 3tsa_A 278 ---VPLNLFL---R-TCELVICA----GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQF 346 (391)
T ss_dssp ---CCGGGTG---G-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHH
T ss_pred ---CCHHHHH---h-hCCEEEeC----CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHH
Confidence 4444544 5 69999975 445799999999999999 455667788888899999998 789999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHH
Q 003985 722 AELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVI 769 (781)
Q Consensus 722 A~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll 769 (781)
+++|.+++ .|++.++++++.+.+.. +..+|+ .+++..++++
T Consensus 347 ~~ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~i~~~~ 387 (391)
T 3tsa_A 347 TDSIATVL----GDTGFAAAAIKLSDEIT-AMPHPA--ALVRTLENTA 387 (391)
T ss_dssp HHHHHHHH----TCTHHHHHHHHHHHHHH-TSCCHH--HHHHHHHHC-
T ss_pred HHHHHHHH----cCHHHHHHHHHHHHHHH-cCCCHH--HHHHHHHHHH
Confidence 99998887 89999999998877765 556663 3445455443
No 34
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.72 E-value=5.6e-17 Score=180.77 Aligned_cols=275 Identities=13% Similarity=0.139 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEcCCCc-hHHHHHHHHHcCCcEEEEecCCccccCCCChhhHhhhhccccchhhhhHH
Q 003985 390 ETFTEDVGSEITAELQGFPDFIIGNYSDG-NLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTAD 468 (781)
Q Consensus 390 ~~f~~~~~~~i~~~l~~~pDIIh~~~~~~-~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e 468 (781)
......+.+.+.+. +||+||++.... .+.+.+++++.|+|++++.+++ .+ + +.+....+. ...
T Consensus 97 ~~~~~~l~~~l~~~---kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~-rs-~---~~~~~~~~~--------~~r 160 (396)
T 3dzc_A 97 SKILLGMQQVLSSE---QPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGL-RT-G---NIYSPWPEE--------GNR 160 (396)
T ss_dssp HHHHHHHHHHHHHH---CCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCC-CC-S---CTTSSTTHH--------HHH
T ss_pred HHHHHHHHHHHHhc---CCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCc-cc-c---ccccCCcHH--------HHH
Confidence 34444555555555 999999988665 4666788999999976543322 11 1 000000000 011
Q ss_pred HHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCC-CcCCCCCCCcHHH-HHHhhh
Q 003985 469 LIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG-ADMDIYFPYSEKQ-KRLTAL 546 (781)
Q Consensus 469 ~~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnG-vD~~~f~p~~~~~-~rl~~~ 546 (781)
...-+.+|.+++.|+...+.+. ..|++ ..++.++.|. +|...+.+..... ...
T Consensus 161 ~~~~~~a~~~~~~se~~~~~l~--------------------~~G~~--~~ki~vvGn~~~d~~~~~~~~~~~~~~~--- 215 (396)
T 3dzc_A 161 KLTAALTQYHFAPTDTSRANLL--------------------QENYN--AENIFVTGNTVIDALLAVREKIHTDMDL--- 215 (396)
T ss_dssp HHHHHTCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHHhcCEEECCCHHHHHHHH--------------------HcCCC--cCcEEEECCcHHHHHHHhhhhcccchhh---
Confidence 1234678999999987654211 12443 6689999874 4432211100000 000
Q ss_pred hcchhhhccCccccccccCCCCCCCCCE-EEEEeecc-CCCChHHHHHHHHHhhccCCCeEEEEE-eCcCCCCCCcchHH
Q 003985 547 HGSIEQLLFDPEQNDEHVGTLSDRSKPI-VFSMARLD-HVKNMTGLVECYGKNSQLRELVNLVVV-AGYIDVNKSKDREE 623 (781)
Q Consensus 547 ~~~i~~~l~~~~~~~~~~g~l~~~~k~i-Il~vGRL~-~~Kgl~~LieA~~~l~~~~~~~~LvIV-G~g~~~~~~~d~ee 623 (781)
....++.+|++ ++++++ +++.+|.. ..|++..+++|+.++.+.+|+++++++ |.++.
T Consensus 216 ----------~~~~r~~lg~l-~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~~--------- 275 (396)
T 3dzc_A 216 ----------QATLESQFPML-DASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNPN--------- 275 (396)
T ss_dssp ----------HHHHHHTCTTC-CTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCHH---------
T ss_pred ----------HHHHHHHhCcc-CCCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCChH---------
Confidence 00112346632 334455 44555654 358899999999999887789999886 43321
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc-Ccccccc
Q 003985 624 IAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT-CHGGPAE 702 (781)
Q Consensus 624 ~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT-~~GG~~E 702 (781)
..+.++++ ++..++|++++ .+...++..+|+. ||++|.+| | |++ +|||+||+|||++ +.++..|
T Consensus 276 --~~~~l~~~---~~~~~~v~~~~----~lg~~~~~~l~~~-ad~vv~~S---G-g~~-~EA~a~G~PvV~~~~~~~~~e 340 (396)
T 3dzc_A 276 --VREPVNKL---LKGVSNIVLIE----PQQYLPFVYLMDR-AHIILTDS---G-GIQ-EEAPSLGKPVLVMRETTERPE 340 (396)
T ss_dssp --HHHHHHHH---TTTCTTEEEEC----CCCHHHHHHHHHH-CSEEEESC---S-GGG-TTGGGGTCCEEECCSSCSCHH
T ss_pred --HHHHHHHH---HcCCCCEEEeC----CCCHHHHHHHHHh-cCEEEECC---c-cHH-HHHHHcCCCEEEccCCCcchH
Confidence 12233332 34557899988 5556788899995 99999998 3 444 8999999999999 7888889
Q ss_pred ccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003985 703 IIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGG 746 (781)
Q Consensus 703 iI~dg~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a 746 (781)
++++| .++++++ |+++++++|.+++ .|++.+++|++++
T Consensus 341 ~v~~G-~~~lv~~-d~~~l~~ai~~ll----~d~~~~~~m~~~~ 378 (396)
T 3dzc_A 341 AVAAG-TVKLVGT-NQQQICDALSLLL----TDPQAYQAMSQAH 378 (396)
T ss_dssp HHHHT-SEEECTT-CHHHHHHHHHHHH----HCHHHHHHHHTSC
T ss_pred HHHcC-ceEEcCC-CHHHHHHHHHHHH----cCHHHHHHHhhcc
Confidence 98887 5777765 8999999998887 7999999998764
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.72 E-value=1.1e-17 Score=184.98 Aligned_cols=149 Identities=9% Similarity=0.002 Sum_probs=99.4
Q ss_pred CCCCEEEEEeeccCCC----------ChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCC
Q 003985 570 RSKPIVFSMARLDHVK----------NMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL 639 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~K----------gl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L 639 (781)
..+++++++|++...| .+..++++++++ ++++++++++.. .+.+. .+
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~------------~~~l~------~~ 282 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-----GFEVVVAVSDKL------------AQTLQ------PL 282 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGGG-----TCEEEECCCC--------------------------C
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-----CCEEEEEeCCcc------------hhhhc------cC
Confidence 3456788899997555 455566665543 588999888754 22222 35
Q ss_pred CCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEE----cCccccccccccCCeEEEECC
Q 003985 640 DGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFA----TCHGGPAEIIEHGASGFHIDP 715 (781)
Q Consensus 640 ~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIa----T~~GG~~EiI~dg~~G~lv~p 715 (781)
.++|++.|+ ++. ..+++ .+|++|.. +.+.+++|||+||+|+|+ ++..+..+.+++.+.|+.+++
T Consensus 283 ~~~v~~~~~----~~~---~~ll~-~ad~~v~~----gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~ 350 (398)
T 4fzr_A 283 PEGVLAAGQ----FPL---SAIMP-ACDVVVHH----GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPW 350 (398)
T ss_dssp CTTEEEESC----CCH---HHHGG-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-
T ss_pred CCcEEEeCc----CCH---HHHHh-hCCEEEec----CCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCc
Confidence 689999994 443 44555 59999965 447899999999999999 555678888889999999988
Q ss_pred C--CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcch
Q 003985 716 Y--HPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSS 758 (781)
Q Consensus 716 ~--d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~ 758 (781)
. |+++++++|.+++ .|++.++++++.+++.. +..+|+.
T Consensus 351 ~~~~~~~l~~ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~ 390 (398)
T 4fzr_A 351 EQAGVESVLAACARIR----DDSSYVGNARRLAAEMA-TLPTPAD 390 (398)
T ss_dssp ------CHHHHHHHHH----HCTHHHHHHHHHHHHHT-TSCCHHH
T ss_pred ccCCHHHHHHHHHHHH----hCHHHHHHHHHHHHHHH-cCCCHHH
Confidence 7 7889999998887 79999999998887765 5566643
No 36
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.67 E-value=1.1e-15 Score=167.96 Aligned_cols=159 Identities=13% Similarity=0.110 Sum_probs=109.0
Q ss_pred CCCCEEEEEeeccCCC--ChHHHHHHHHHhhccCCCeEEEE-EeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEe
Q 003985 570 RSKPIVFSMARLDHVK--NMTGLVECYGKNSQLRELVNLVV-VAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 646 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~K--gl~~LieA~~~l~~~~~~~~LvI-VG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~fl 646 (781)
..+.++++.|+....+ .+..++++++ +. + +++++ +|++.+ .+.+. .+.++|++.
T Consensus 230 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~---~~-~-~~~~~~~g~~~~------------~~~~~------~~~~~v~~~ 286 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEHPEFFRACAQAFA---DT-P-WHVVMAIGGFLD------------PAVLG------PLPPNVEAH 286 (402)
T ss_dssp TCCEEEEECCSCSSCCHHHHHHHHHHHT---TS-S-CEEEEECCTTSC------------GGGGC------SCCTTEEEE
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHHh---cC-C-cEEEEEeCCcCC------------hhhhC------CCCCcEEEe
Confidence 3455678889987665 2334444433 22 2 56655 454433 11111 256789999
Q ss_pred ccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEE-----cCccccccccccCCeEEEECCC--CHH
Q 003985 647 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFA-----TCHGGPAEIIEHGASGFHIDPY--HPD 719 (781)
Q Consensus 647 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIa-----T~~GG~~EiI~dg~~G~lv~p~--d~e 719 (781)
|+ ++.. .+++ .+|++|..+- ..|++|||++|+|+|+ .+..+.++.+.+.+.|..++++ +++
T Consensus 287 ~~----~~~~---~ll~-~ad~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~ 354 (402)
T 3ia7_A 287 QW----IPFH---SVLA-HARACLTHGT----TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPA 354 (402)
T ss_dssp SC----CCHH---HHHT-TEEEEEECCC----HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHH
T ss_pred cC----CCHH---HHHh-hCCEEEECCC----HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHH
Confidence 94 4343 5666 5999998853 3789999999999994 4455778888888999999876 899
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHH
Q 003985 720 QAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVIN 770 (781)
Q Consensus 720 ~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~ 770 (781)
+++++|.+++ .|++.++++++.+.+.. +..++ ..+++..++++.
T Consensus 355 ~l~~~~~~ll----~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~i~~~~~ 398 (402)
T 3ia7_A 355 SIREAVERLA----ADSAVRERVRRMQRDIL-SSGGP--ARAADEVEAYLG 398 (402)
T ss_dssp HHHHHHHHHH----HCHHHHHHHHHHHHHHH-TSCHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCHHHHHHHHHHHHHHh-hCChH--HHHHHHHHHHHh
Confidence 9999998887 79999999988776654 44444 345555566553
No 37
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.67 E-value=7.4e-16 Score=170.51 Aligned_cols=157 Identities=13% Similarity=0.117 Sum_probs=111.0
Q ss_pred CCCCEEEEEeeccCC-CChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 003985 570 RSKPIVFSMARLDHV-KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 648 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~-Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~ 648 (781)
..+++++++|++... |+...+.+++..+.+. ++++++++++.+. +.+. ++.++|++.|+
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~--~~~~v~~~g~~~~------------~~l~------~~~~~v~~~~~ 290 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGEV--DADFVLALGDLDI------------SPLG------TLPRNVRAVGW 290 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS--SSEEEEECTTSCC------------GGGC------SCCTTEEEESS
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHcC--CCEEEEEECCcCh------------hhhc------cCCCcEEEEcc
Confidence 345677888999654 3555555555555443 6899999988651 1111 35688999994
Q ss_pred ccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEE----cCccccc--cccccCCeEEEECCC--CHHH
Q 003985 649 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFA----TCHGGPA--EIIEHGASGFHIDPY--HPDQ 720 (781)
Q Consensus 649 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIa----T~~GG~~--EiI~dg~~G~lv~p~--d~e~ 720 (781)
++.. .+++ .+|++|.. +.+.++.|||++|+|+|+ .+.++.. +.+++.+.|+.+++. ++++
T Consensus 291 ----~~~~---~ll~-~ad~~v~~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~ 358 (398)
T 3oti_A 291 ----TPLH---TLLR-TCTAVVHH----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADL 358 (398)
T ss_dssp ----CCHH---HHHT-TCSEEEEC----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHH
T ss_pred ----CCHH---HHHh-hCCEEEEC----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHH
Confidence 4444 4555 59999975 445799999999999999 5678888 999999999999876 5555
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHH
Q 003985 721 AAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVI 769 (781)
Q Consensus 721 lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll 769 (781)
++ +++ .|++.++++++.+.+.. +..+|+ .+++..++++
T Consensus 359 l~----~ll----~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~l~ 396 (398)
T 3oti_A 359 LR----RLI----GDESLRTAAREVREEMV-ALPTPA--ETVRRIVERI 396 (398)
T ss_dssp HH----HHH----HCHHHHHHHHHHHHHHH-TSCCHH--HHHHHHHHHH
T ss_pred HH----HHH----cCHHHHHHHHHHHHHHH-hCCCHH--HHHHHHHHHh
Confidence 55 444 79999999988887765 566663 4555555553
No 38
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.67 E-value=5.9e-16 Score=172.96 Aligned_cols=269 Identities=17% Similarity=0.153 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEcCCCc-hHHHHHHHHHcCCcEEEEecCCccccCCCChhhHhhhhccccchhhhhHH
Q 003985 390 ETFTEDVGSEITAELQGFPDFIIGNYSDG-NLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTAD 468 (781)
Q Consensus 390 ~~f~~~~~~~i~~~l~~~pDIIh~~~~~~-~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e 468 (781)
......+.+.+.+. +||+||++.... .+.+.+++++.|+|++....++ .+ + +.++...+. ...
T Consensus 100 ~~~~~~l~~~l~~~---kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~agl-rs-~---~~~~~~p~~--------~~r 163 (403)
T 3ot5_A 100 SRVMNGINEVIAAE---NPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGL-RT-W---NKYSPFPEE--------MNR 163 (403)
T ss_dssp HHHHHHHHHHHHHH---CCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCC-CC-S---CTTSSTTHH--------HHH
T ss_pred HHHHHHHHHHHHHc---CCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCc-cc-c---ccccCCcHH--------HHH
Confidence 33444555555555 999999988654 5666788999999976443222 11 0 001000000 011
Q ss_pred HHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecC-CCcCCCCCCCcHHHHHHhhhh
Q 003985 469 LIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSP-GADMDIYFPYSEKQKRLTALH 547 (781)
Q Consensus 469 ~~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpn-GvD~~~f~p~~~~~~rl~~~~ 547 (781)
...-..+|.+++.|+...+.+. ..|++ ..++.++.| ++|...+.+.....
T Consensus 164 ~~~~~~a~~~~~~se~~~~~l~--------------------~~Gi~--~~~i~vvGn~~~D~~~~~~~~~~~------- 214 (403)
T 3ot5_A 164 QLTGVMADIHFSPTKQAKENLL--------------------AEGKD--PATIFVTGNTAIDALKTTVQKDYH------- 214 (403)
T ss_dssp HHHHHHCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHSCTTCC-------
T ss_pred HHHHHhcCEEECCCHHHHHHHH--------------------HcCCC--cccEEEeCCchHHHHHhhhhhhcc-------
Confidence 1234458999999987654211 12443 668999987 45543221111000
Q ss_pred cchhhhccCccccccccCCCCCCCCCEEEEEeeccC-CCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHH
Q 003985 548 GSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDH-VKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAE 626 (781)
Q Consensus 548 ~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~-~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~ 626 (781)
.+..+.+ ++++.++++.||... .|++..+++|+.++.+.+|+++++++++... ..
T Consensus 215 ----------~~~~~~l----~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~----------~~ 270 (403)
T 3ot5_A 215 ----------HPILENL----GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNP----------AV 270 (403)
T ss_dssp ----------CHHHHSC----TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCH----------HH
T ss_pred ----------hHHHHhc----cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCH----------HH
Confidence 0000111 223345666777644 4789999999999988788999988753211 11
Q ss_pred HHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc-Cccccccccc
Q 003985 627 IEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT-CHGGPAEIIE 705 (781)
Q Consensus 627 ~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT-~~GG~~EiI~ 705 (781)
.+.++++ ++..++|+++| .+...++..+++. ||++|.+| |...+|||+||+|+|++ +.|+..|.++
T Consensus 271 ~~~l~~~---~~~~~~v~l~~----~l~~~~~~~l~~~-ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~ 337 (403)
T 3ot5_A 271 REKAMAI---LGGHERIHLIE----PLDAIDFHNFLRK-SYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTERPEGIE 337 (403)
T ss_dssp HHHHHHH---HTTCTTEEEEC----CCCHHHHHHHHHH-EEEEEECC-----HHHHHHGGGTTCCEEECCSSCSCHHHHH
T ss_pred HHHHHHH---hCCCCCEEEeC----CCCHHHHHHHHHh-cCEEEECC-----ccHHHHHHHhCCCEEEecCCCcchhhee
Confidence 2222222 34457899998 5666789999995 99999998 44448999999999999 7888889887
Q ss_pred cCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003985 706 HGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGG 746 (781)
Q Consensus 706 dg~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a 746 (781)
.| +|+++++ |+++++++|.+++ .|++.+++|++++
T Consensus 338 ~g-~~~lv~~-d~~~l~~ai~~ll----~~~~~~~~m~~~~ 372 (403)
T 3ot5_A 338 AG-TLKLIGT-NKENLIKEALDLL----DNKESHDKMAQAA 372 (403)
T ss_dssp HT-SEEECCS-CHHHHHHHHHHHH----HCHHHHHHHHHSC
T ss_pred CC-cEEEcCC-CHHHHHHHHHHHH----cCHHHHHHHHhhc
Confidence 66 8999976 9999999998887 7999999987654
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.63 E-value=3.1e-14 Score=157.88 Aligned_cols=158 Identities=10% Similarity=0.028 Sum_probs=106.7
Q ss_pred CCCCEEEEEeeccCCCC--hHHHHHHHHHhhccCCCeEEEE-EeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEe
Q 003985 570 RSKPIVFSMARLDHVKN--MTGLVECYGKNSQLRELVNLVV-VAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 646 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~Kg--l~~LieA~~~l~~~~~~~~LvI-VG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~fl 646 (781)
..+.++++.|++...++ +..+++++. + .+ +++++ +|++.+ .+.+ ..+.++|++.
T Consensus 246 ~~~~v~v~~Gs~~~~~~~~~~~~~~al~---~-~~-~~~v~~~g~~~~------------~~~l------~~~~~~v~~~ 302 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRPGFFRDCARAFD---G-QP-WHVVMTLGGQVD------------PAAL------GDLPPNVEAH 302 (415)
T ss_dssp CCCEEEEECTTTSCCCHHHHHHHHHHHT---T-SS-CEEEEECTTTSC------------GGGG------CCCCTTEEEE
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHh---c-CC-cEEEEEeCCCCC------------hHHh------cCCCCcEEEE
Confidence 34556778898865432 333344333 2 23 77777 454433 1111 1356789999
Q ss_pred ccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc----CccccccccccCCeEEEECCC--CHHH
Q 003985 647 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT----CHGGPAEIIEHGASGFHIDPY--HPDQ 720 (781)
Q Consensus 647 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT----~~GG~~EiI~dg~~G~lv~p~--d~e~ 720 (781)
|+ ++.. .+++ .+|++|..+- ..|+.|||++|+|+|+. +....++.+.+.+.|..+++. ++++
T Consensus 303 ~~----~~~~---~ll~-~ad~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~ 370 (415)
T 3rsc_A 303 RW----VPHV---KVLE-QATVCVTHGG----MGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDT 370 (415)
T ss_dssp SC----CCHH---HHHH-HEEEEEESCC----HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHH
T ss_pred ec----CCHH---HHHh-hCCEEEECCc----HHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHH
Confidence 84 4443 5566 5999998752 37899999999999994 555577788888899999876 8899
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHH
Q 003985 721 AAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVI 769 (781)
Q Consensus 721 lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll 769 (781)
++++|.+++ .|++.++++++.+.+.. +...+ ..+++..++++
T Consensus 371 l~~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~i~~~~ 412 (415)
T 3rsc_A 371 LLAAVGAVA----ADPALLARVEAMRGHVR-RAGGA--ARAADAVEAYL 412 (415)
T ss_dssp HHHHHHHHH----TCHHHHHHHHHHHHHHH-HSCHH--HHHHHHHHHHH
T ss_pred HHHHHHHHH----cCHHHHHHHHHHHHHHH-hcCHH--HHHHHHHHHHh
Confidence 999998887 89999999988776655 44444 34445555554
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.62 E-value=1.8e-14 Score=158.23 Aligned_cols=139 Identities=15% Similarity=0.129 Sum_probs=104.4
Q ss_pred CCEEEEEeeccCC-------CChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEE
Q 003985 572 KPIVFSMARLDHV-------KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR 644 (781)
Q Consensus 572 k~iIl~vGRL~~~-------Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~ 644 (781)
..+++++|++... +.+..+++++++. ++++++++++.. .+.+. . ++++|.
T Consensus 211 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~------------~~~l~----~--~~~~v~ 267 (384)
T 2p6p_A 211 QRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-----DVELIVAAPDTV------------AEALR----A--EVPQAR 267 (384)
T ss_dssp CEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-----TCEEEEECCHHH------------HHHHH----H--HCTTSE
T ss_pred CEEEEECCCCCccccccccHHHHHHHHHHHhcC-----CcEEEEEeCCCC------------HHhhC----C--CCCceE
Confidence 4578899999875 5677788887653 578888776532 22222 1 357899
Q ss_pred EeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCCeEEEECCC--CH
Q 003985 645 WIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--HP 718 (781)
Q Consensus 645 flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG----~~EiI~dg~~G~lv~p~--d~ 718 (781)
+ |+ ++..+ +++ .+|+||..+ .+.|++|||++|+|+|++..++ .++.+++.+.|+.+++. ++
T Consensus 268 ~-~~----~~~~~---~l~-~~d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~ 334 (384)
T 2p6p_A 268 V-GW----TPLDV---VAP-TCDLLVHHA----GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDST 334 (384)
T ss_dssp E-EC----CCHHH---HGG-GCSEEEECS----CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCH
T ss_pred E-cC----CCHHH---HHh-hCCEEEeCC----cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCH
Confidence 9 94 44444 455 599999974 3579999999999999997643 67777777889999875 78
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 003985 719 DQAAELMADFFGKCKENPSHWKKISDGGLKRI 750 (781)
Q Consensus 719 e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v 750 (781)
++++++|.+++ .|++.++++++.+.+..
T Consensus 335 ~~l~~~i~~ll----~~~~~~~~~~~~~~~~~ 362 (384)
T 2p6p_A 335 EAIADSCQELQ----AKDTYARRAQDLSREIS 362 (384)
T ss_dssp HHHHHHHHHHH----HCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCHHHHHHHHHHHHHHH
Confidence 99999998887 79999998888776554
No 41
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.46 E-value=7.5e-13 Score=148.69 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=112.3
Q ss_pred CCEEEEEeeccC-----CCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEe
Q 003985 572 KPIVFSMARLDH-----VKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 646 (781)
Q Consensus 572 k~iIl~vGRL~~-----~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~fl 646 (781)
..++++.|++.. .|.+..++++++++ ++++++++++.. .+.+. ++.++|++.
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~------------~~~l~------~~~~~v~~~ 324 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV-----DAEIIATFDAQQ------------LEGVA------NIPDNVRTV 324 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS-----SSEEEECCCTTT------------TSSCS------SCCSSEEEC
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC-----CCEEEEEECCcc------------hhhhc------cCCCCEEEe
Confidence 447888999875 48888999998764 478888877644 11110 356789999
Q ss_pred ccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCCeEEEECCC--CHHH
Q 003985 647 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIEHGASGFHIDPY--HPDQ 720 (781)
Q Consensus 647 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~G----G~~EiI~dg~~G~lv~p~--d~e~ 720 (781)
| .++..++ +. ++|++|.. +.+.|+.|||++|+|+|+...+ +.++.+++.+.|+.+++. ++++
T Consensus 325 ~----~~~~~~l---l~-~ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 392 (441)
T 2yjn_A 325 G----FVPMHAL---LP-TCAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQ 392 (441)
T ss_dssp C----SCCHHHH---GG-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHH
T ss_pred c----CCCHHHH---Hh-hCCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHH
Confidence 9 4555444 45 69999985 4467999999999999999764 366777777899999876 8899
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHh
Q 003985 721 AAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINV 771 (781)
Q Consensus 721 lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~~ 771 (781)
++++|.+++ .|++.++++++.+.+.. +...+ ..+++..++++..
T Consensus 393 l~~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~i~~~~~~ 436 (441)
T 2yjn_A 393 LRESVKRVL----DDPAHRAGAARMRDDML-AEPSP--AEVVGICEELAAG 436 (441)
T ss_dssp HHHHHHHHH----HCHHHHHHHHHHHHHHH-TSCCH--HHHHHHHHHHHHC
T ss_pred HHHHHHHHh----cCHHHHHHHHHHHHHHH-cCCCH--HHHHHHHHHHHHh
Confidence 999998887 79999999888776654 34443 3455666666544
No 42
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.39 E-value=1e-12 Score=145.83 Aligned_cols=262 Identities=11% Similarity=0.080 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcEEEEecCCccccCCCChhhHhhhhccccchhhhhHHHH
Q 003985 391 TFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLI 470 (781)
Q Consensus 391 ~f~~~~~~~i~~~l~~~pDIIh~~~~~~~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~ 470 (781)
.....+.+.+.+. +||+|+++.......+++.+++.|+|+++...++ .+ + +..+ .+. .....
T Consensus 81 ~~~~~l~~~l~~~---kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eagl-rs-~---~~~~--pee--------~nR~~ 142 (385)
T 4hwg_A 81 LVIEKVDEVLEKE---KPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGN-RC-F---DQRV--PEE--------INRKI 142 (385)
T ss_dssp HHHHHHHHHHHHH---CCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCC-CC-S---CTTS--THH--------HHHHH
T ss_pred HHHHHHHHHHHhc---CCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCC-cc-c---cccC--cHH--------HHHHH
Confidence 3344455555554 9999999876543333788899999965443322 11 0 0000 000 01112
Q ss_pred HHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCC-CcCCCCCCCcHHHHHHhhhhcc
Q 003985 471 AMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG-ADMDIYFPYSEKQKRLTALHGS 549 (781)
Q Consensus 471 a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnG-vD~~~f~p~~~~~~rl~~~~~~ 549 (781)
.-..+|.+++.|+...+.+. ..|++ ..++.++.|. +|...+. . ....
T Consensus 143 ~~~~a~~~~~~te~~~~~l~--------------------~~G~~--~~~I~vtGnp~~D~~~~~--~---~~~~----- 190 (385)
T 4hwg_A 143 IDHISDVNITLTEHARRYLI--------------------AEGLP--AELTFKSGSHMPEVLDRF--M---PKIL----- 190 (385)
T ss_dssp HHHHCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCSHHHHHHHH--H---HHHH-----
T ss_pred HHhhhceeecCCHHHHHHHH--------------------HcCCC--cCcEEEECCchHHHHHHh--h---hhcc-----
Confidence 33568999999987654211 12443 5688888863 3421110 0 0000
Q ss_pred hhhhccCccccccccCCCCCCCCCEEEEEeecc---CCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHH
Q 003985 550 IEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLD---HVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAE 626 (781)
Q Consensus 550 i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~---~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~ 626 (781)
..+.++.+|+ ++++.++++.+|.. ..|++..+++|+.++.+.. ++.+++..+ +
T Consensus 191 -------~~~~~~~lgl--~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~-~~~vv~p~~-p------------- 246 (385)
T 4hwg_A 191 -------KSDILDKLSL--TPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY-NFLIIFSTH-P------------- 246 (385)
T ss_dssp -------HCCHHHHTTC--CTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH-CCEEEEEEC-H-------------
T ss_pred -------hhHHHHHcCC--CcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC-CeEEEEECC-h-------------
Confidence 1122345776 34444566667643 4478999999999987644 577776543 2
Q ss_pred HHHHHHHHHHc-C-C--CCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc-ccc
Q 003985 627 IEKMHELMKTY-K-L--DGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG-GPA 701 (781)
Q Consensus 627 ~~~l~~li~el-~-L--~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~G-G~~ 701 (781)
.+++.++++ + + .++|.+++ .+...++..+++. +|++|.+| |.+..||+++|+|+|..+.. +..
T Consensus 247 --~~~~~l~~~~~~~~~~~~v~l~~----~lg~~~~~~l~~~-adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter~ 314 (385)
T 4hwg_A 247 --RTKKRLEDLEGFKELGDKIRFLP----AFSFTDYVKLQMN-AFCILSDS-----GTITEEASILNLPALNIREAHERP 314 (385)
T ss_dssp --HHHHHHHTSGGGGGTGGGEEECC----CCCHHHHHHHHHH-CSEEEECC-----TTHHHHHHHTTCCEEECSSSCSCT
T ss_pred --HHHHHHHHHHHHhcCCCCEEEEc----CCCHHHHHHHHHh-CcEEEECC-----ccHHHHHHHcCCCEEEcCCCccch
Confidence 134445554 3 2 46899987 5666688888995 99999887 55679999999999998544 356
Q ss_pred cccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 003985 702 EIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISD 744 (781)
Q Consensus 702 EiI~dg~~G~lv~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~ 744 (781)
|.++.| ++.++.+ |++++++++.+++ .|+..+++|++
T Consensus 315 e~v~~G-~~~lv~~-d~~~i~~ai~~ll----~d~~~~~~m~~ 351 (385)
T 4hwg_A 315 EGMDAG-TLIMSGF-KAERVLQAVKTIT----EEHDNNKRTQG 351 (385)
T ss_dssp HHHHHT-CCEECCS-SHHHHHHHHHHHH----TTCBTTBCCSC
T ss_pred hhhhcC-ceEEcCC-CHHHHHHHHHHHH----hChHHHHHhhc
Confidence 777666 6777754 8999999998887 67666555544
No 43
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.39 E-value=4.8e-12 Score=149.01 Aligned_cols=331 Identities=15% Similarity=0.046 Sum_probs=205.6
Q ss_pred CceEEEEcCCCchHHHH-HHHHH--------------cCCcEEEEecCCccccC---CCC-------h-------hhHhh
Q 003985 407 FPDFIIGNYSDGNLVAS-LLAYK--------------MGITQCTIAHALEKTKY---PDS-------D-------IYWKK 454 (781)
Q Consensus 407 ~pDIIh~~~~~~~lva~-llar~--------------~gvp~v~t~H~l~~~k~---~~s-------~-------~~~k~ 454 (781)
+||+||+|.+.++++.. ++... ...++++|.|++-+... +.. . +.+..
T Consensus 289 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~~ 368 (796)
T 2c4m_A 289 EFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQIFQQLFWRVWEIIAEIDRRF 368 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHHhhhCCHHHHHHHhHHHHHHHcCcCHHH
Confidence 69999999999876555 44222 35678999999866442 100 0 00000
Q ss_pred hh-------------c-cccchhhhhHHHHHHhhCCEEEecCHHHHhhcccc-ccccccccccccccceeeeccCCCCCC
Q 003985 455 FD-------------E-KYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNT-VGQYESHTAFTLPGLYRVVHGIDVFDP 519 (781)
Q Consensus 455 ~~-------------~-~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~-v~qy~s~~~f~lp~ly~v~~gi~~f~~ 519 (781)
+. . ...+..++.--..++..++.|-++|..-.+.+++. ++ ++++ ..+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~~f~-----------~~~~------~~p~ 431 (796)
T 2c4m_A 369 RLERAADGLDEETINRMAPIQHGTVHMAWIACYAAYSINGVAALHTEIIKAETLA-----------DWYA------LWPE 431 (796)
T ss_dssp HHHHHHTTCCHHHHHHHCSEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHTTTH-----------HHHH------HCGG
T ss_pred HHHHHhcCCcHhhhhcccceeCCcccHHHHHHHhcCceeeccHHHHHHhhhhhhh-----------hHHH------cCcc
Confidence 00 0 00011123334568889999999998766655532 11 1221 2256
Q ss_pred ceEEecCCCcCCCCCC--CcHHHHHHhhhhc------------c----h------hhhc----cCccc----cccccCCC
Q 003985 520 KFNIVSPGADMDIYFP--YSEKQKRLTALHG------------S----I------EQLL----FDPEQ----NDEHVGTL 567 (781)
Q Consensus 520 k~~VIpnGvD~~~f~p--~~~~~~rl~~~~~------------~----i------~~~l----~~~~~----~~~~~g~l 567 (781)
|++-|.||||...+-. .+.....+.+... . + +++. .++.. .+++.|+.
T Consensus 432 kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~ 511 (796)
T 2c4m_A 432 KFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIE 511 (796)
T ss_dssp GEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999988832 1221111111000 0 0 0000 01111 13456887
Q ss_pred CCCCCCEEEEEeeccCCCChHH-HHHHHHHhhc--cC-----CCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHH----
Q 003985 568 SDRSKPIVFSMARLDHVKNMTG-LVECYGKNSQ--LR-----ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK---- 635 (781)
Q Consensus 568 ~~~~k~iIl~vGRL~~~Kgl~~-LieA~~~l~~--~~-----~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~---- 635 (781)
.+++.+.++++.|+..+|+.+. ++..+.++.+ .. ..+++++.|.+.. .+...+..++.+.++++
T Consensus 512 vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P----~y~~aK~iIk~i~~va~~in~ 587 (796)
T 2c4m_A 512 IDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAP----GYVRAKAIIKLINSIADLVNN 587 (796)
T ss_dssp CCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCT----TCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCH----hHHHHHHHHHHHHHHHHHhcc
Confidence 7889999999999999999999 7887766643 22 2588888888765 23344445555666665
Q ss_pred HcCCCC--cEEEeccccCcCChHHHHHHHHccCcEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCcccccccccc--CCe
Q 003985 636 TYKLDG--QFRWIAAQTNRARNGELYRYIADTKGAFVQPAF--YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEH--GAS 709 (781)
Q Consensus 636 el~L~~--~V~flG~~~~~v~~~el~~~la~aadvfV~PS~--~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~d--g~~ 709 (781)
.-...+ +|.|+. .. +..+.+.+..++|++.+||. +|++|+.=+=||..|.++|.|-.|...|+.++ .+|
T Consensus 588 dp~~~~~lKVvFl~----nY-~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~N 662 (796)
T 2c4m_A 588 DPEVSPLLKVVFVE----NY-NVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEEN 662 (796)
T ss_dssp CTTTTTTEEEEEET----TC-CHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGG
T ss_pred ccccCCceEEEEEC----CC-CHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCc
Confidence 113456 788886 33 34555555557999999999 99999999999999999999999999998765 469
Q ss_pred EEEECC--CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchh-hhccchHHH
Q 003985 710 GFHIDP--YHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSD-GIVDPSPFV 768 (781)
Q Consensus 710 G~lv~p--~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~-~il~~ye~l 768 (781)
||+|.. .++.++-.. .+..+....+| .++++-+.+.. ..|||... ...+.|.++
T Consensus 663 gF~FG~~~~ev~~l~~~-y~a~~~y~~~~-~~~~vvd~~~~---g~fs~~~~~~y~~Ly~~L 719 (796)
T 2c4m_A 663 AYIFGARVEELPALRES-YKPYELYETVP-GLKRALDALDN---GTLNDNNSGLFYDLKHSL 719 (796)
T ss_dssp SEEESCCTTTHHHHHHT-CCHHHHHHHST-THHHHHHTTTS---SSSCCTTCCHHHHHHHHH
T ss_pred EEEecCchhhHHHHHHh-hChHHHhhcCH-HHHHHHHHHHc---CCCCCCCHHHHHHHHHHH
Confidence 999976 677776554 33333333555 45555554443 57899663 333344443
No 44
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.37 E-value=3.2e-11 Score=134.10 Aligned_cols=137 Identities=12% Similarity=0.087 Sum_probs=97.6
Q ss_pred CCCCEEEEEeecc-CCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 003985 570 RSKPIVFSMARLD-HVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 648 (781)
Q Consensus 570 ~~k~iIl~vGRL~-~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~ 648 (781)
..++++++.|++. ..+.+..+++++++. +++++++++.... +..++.++|++.+
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~-----~~~vv~~~g~~~~-------------------~~~~~~~~v~~~~- 274 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ-----GRRVVLSSGWAGL-------------------GRIDEGDDCLVVG- 274 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT-----TCCEEEECTTTTC-------------------CCSSCCTTEEEES-
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC-----CCEEEEEeCCccc-------------------ccccCCCCEEEec-
Confidence 3466788899998 677778888888765 3667777665431 0123468899998
Q ss_pred ccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCCeEEEECCC--CHHHHH
Q 003985 649 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--HPDQAA 722 (781)
Q Consensus 649 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG----~~EiI~dg~~G~lv~p~--d~e~lA 722 (781)
.++..+++ . .+|++|..+- ..|+.|||++|+|+|+...++ ..+.+++.+.|..+++. +.++++
T Consensus 275 ---~~~~~~ll---~-~~d~~v~~gG----~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~ 343 (404)
T 3h4t_A 275 ---EVNHQVLF---G-RVAAVVHHGG----AGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLS 343 (404)
T ss_dssp ---SCCHHHHG---G-GSSEEEECCC----HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHH
T ss_pred ---CCCHHHHH---h-hCcEEEECCc----HHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHH
Confidence 45555544 4 5999998742 379999999999999975543 34446666789888754 789999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 003985 723 ELMADFFGKCKENPSHWKKISDGGL 747 (781)
Q Consensus 723 ~~I~~~l~~l~~dp~~~~~~s~~a~ 747 (781)
++|.+++ . +++++++++.+.
T Consensus 344 ~ai~~ll----~-~~~~~~~~~~~~ 363 (404)
T 3h4t_A 344 AALATAL----T-PGIRARAAAVAG 363 (404)
T ss_dssp HHHHHHT----S-HHHHHHHHHHHT
T ss_pred HHHHHHh----C-HHHHHHHHHHHH
Confidence 9998776 6 877777666543
No 45
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.35 E-value=1.1e-11 Score=145.97 Aligned_cols=333 Identities=12% Similarity=0.000 Sum_probs=206.1
Q ss_pred CceEEEEcCCCchHHHH-HHHHH--------------cCCcEEEEecCCccccC---CCC-------hhhH--hhhhc--
Q 003985 407 FPDFIIGNYSDGNLVAS-LLAYK--------------MGITQCTIAHALEKTKY---PDS-------DIYW--KKFDE-- 457 (781)
Q Consensus 407 ~pDIIh~~~~~~~lva~-llar~--------------~gvp~v~t~H~l~~~k~---~~s-------~~~~--k~~~~-- 457 (781)
+||+||+|.+.++++.. ++... ...++++|.|++-+... +.. .... ..+..
T Consensus 299 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~f 378 (796)
T 1l5w_A 299 DYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRF 378 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CccEEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHhhhhcCCHHHHHHHhHHHHHHHhccCHHH
Confidence 69999999999876555 44222 47889999999866442 100 0000 00000
Q ss_pred ------------------cccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCC
Q 003985 458 ------------------KYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDP 519 (781)
Q Consensus 458 ------------------~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~s~~~f~lp~ly~v~~gi~~f~~ 519 (781)
...+-.++.--..++..++.|-++|..-.+.+++.. | ++++ ..++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~--f--------~~~~------~~~p~ 442 (796)
T 1l5w_A 379 KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDL--F--------PEYH------QLWPN 442 (796)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEETTEEEHHHHHHHHSSEEEESSHHHHHHHHHTT--S--------HHHH------HHCGG
T ss_pred HHHHHHhcCCcHHHHhhhhcccCCcccHHHHHHHhcCccccccHHHHHHHHhHH--h--------hHHH------HhCcc
Confidence 000001233345678899999999987666554321 0 1112 12256
Q ss_pred ceEEecCCCcCCCCCC--CcHHHHHHhh---------------hhcchh------hhccC----ccc----cccccCCCC
Q 003985 520 KFNIVSPGADMDIYFP--YSEKQKRLTA---------------LHGSIE------QLLFD----PEQ----NDEHVGTLS 568 (781)
Q Consensus 520 k~~VIpnGvD~~~f~p--~~~~~~rl~~---------------~~~~i~------~~l~~----~~~----~~~~~g~l~ 568 (781)
|++-|.||||...+-. .+.....+.+ +.+-++ ++... +.. .+++.|+..
T Consensus 443 k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~v 522 (796)
T 1l5w_A 443 KFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEI 522 (796)
T ss_dssp GEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8999999999877621 1111111110 000000 00001 111 134568877
Q ss_pred CCCCCEEEEEeeccCCCChHH-HHHHHHHhhc--cC-----CCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHH----H
Q 003985 569 DRSKPIVFSMARLDHVKNMTG-LVECYGKNSQ--LR-----ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK----T 636 (781)
Q Consensus 569 ~~~k~iIl~vGRL~~~Kgl~~-LieA~~~l~~--~~-----~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~----e 636 (781)
+++.+.++++.|+..+|+.+. ++..+.++.+ .. ..+++++.|.+.. .+...+..++.+.++++ .
T Consensus 523 dpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P----~y~~aK~iIk~i~~va~~in~D 598 (796)
T 1l5w_A 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAP----GYYLAKNIIFAINKVADVINND 598 (796)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCT----TCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCCh----hHHHHHHHHHHHHHHHHHhccc
Confidence 889999999999999999999 7777666543 11 2488888888765 23344445555666665 1
Q ss_pred cCCCC--cEEEeccccCcCChHHHHHHHHccCcEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCcccccccccc--CCeE
Q 003985 637 YKLDG--QFRWIAAQTNRARNGELYRYIADTKGAFVQPAF--YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEH--GASG 710 (781)
Q Consensus 637 l~L~~--~V~flG~~~~~v~~~el~~~la~aadvfV~PS~--~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~d--g~~G 710 (781)
-...+ +|.|+. .. +..+.+.+..++|++.+||. +|++|+.=+=||..|.++|.|-.|...|+.++ .+||
T Consensus 599 p~~~~~lKVvfl~----nY-~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~Ng 673 (796)
T 1l5w_A 599 PLVGDKLKVVFLP----DY-CVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENI 673 (796)
T ss_dssp TTTGGGEEEEECS----SC-CHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGS
T ss_pred cccCCceEEEEEC----CC-CHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhccCCCcE
Confidence 13456 788885 33 34555555557999999999 99999999999999999999999999998765 4699
Q ss_pred EEECCCCHHHHHHH---HHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhc
Q 003985 711 FHIDPYHPDQAAEL---MADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVI 772 (781)
Q Consensus 711 ~lv~p~d~e~lA~~---I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll~~~ 772 (781)
|+|.. +++++.+. ..+..+....+| .++++-+.+.. ..|||... ..|+.+++.+
T Consensus 674 F~FG~-~~~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~~~---g~fs~~~~---~~y~~Ly~~L 730 (796)
T 1l5w_A 674 FIFGH-TVEQVKAILAKGYDPVKWRKKDK-VLDAVLKELES---GKYSDGDK---HAFDQMLHSI 730 (796)
T ss_dssp EECSC-CHHHHHHHHHHCCCHHHHHHHCH-HHHHHHHHHHH---TTTTTTCT---TTTHHHHHHT
T ss_pred EEecC-CHHHHHHHHHcccCHHHHhhcCH-HHHHHHHHHHc---CCCCCCcH---HHHHHHHHHH
Confidence 99986 77776632 211122223566 46666565544 67999663 4466666554
No 46
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.33 E-value=2.1e-10 Score=127.71 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=97.4
Q ss_pred CCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEE-EEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 003985 570 RSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLV-VVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 648 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~Lv-IVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~ 648 (781)
+.+.++++.|++. .+....+.+++..+.+ .+++++ ++|.+.+ .+.+ -.++++|++.++
T Consensus 254 ~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~--~~~~~~~~~g~~~~------------~~~~------~~~~~~v~~~~~ 312 (424)
T 2iya_A 254 GRPVLLIALGSAF-TDHLDFYRTCLSAVDG--LDWHVVLSVGRFVD------------PADL------GEVPPNVEVHQW 312 (424)
T ss_dssp SCCEEEEECCSSS-CCCHHHHHHHHHHHTT--CSSEEEEECCTTSC------------GGGG------CSCCTTEEEESS
T ss_pred CCCEEEEEcCCCC-cchHHHHHHHHHHHhc--CCcEEEEEECCcCC------------hHHh------ccCCCCeEEecC
Confidence 3455678889987 3343444444444433 356774 4566543 1111 125678999994
Q ss_pred ccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCCeEEEECCC--CHHHHH
Q 003985 649 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIEHGASGFHIDPY--HPDQAA 722 (781)
Q Consensus 649 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~G----G~~EiI~dg~~G~lv~p~--d~e~lA 722 (781)
++.. .+++ .+|++|.-+ -+.+++|||++|+|+|+.... ..++.+++.+.|..+++. ++++++
T Consensus 313 ----~~~~---~~l~-~~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~ 380 (424)
T 2iya_A 313 ----VPQL---DILT-KASAFITHA----GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLR 380 (424)
T ss_dssp ----CCHH---HHHT-TCSEEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHH
T ss_pred ----CCHH---HHHh-hCCEEEECC----chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHH
Confidence 4443 4666 599999863 247999999999999999654 345566677789998765 889999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHH
Q 003985 723 ELMADFFGKCKENPSHWKKISDGGLKR 749 (781)
Q Consensus 723 ~~I~~~l~~l~~dp~~~~~~s~~a~~~ 749 (781)
++|.+++ .|++.++++++.+.+.
T Consensus 381 ~~i~~ll----~~~~~~~~~~~~~~~~ 403 (424)
T 2iya_A 381 EAVLAVA----SDPGVAERLAAVRQEI 403 (424)
T ss_dssp HHHHHHH----HCHHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCHHHHHHHHHHHHHH
Confidence 9998887 7998888877766554
No 47
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.29 E-value=6.6e-11 Score=136.91 Aligned_cols=186 Identities=10% Similarity=-0.010 Sum_probs=132.9
Q ss_pred ccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEE--EEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCC
Q 003985 563 HVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLV--VVAGYIDVNKSKDREEIAEIEKMHELMKTYKLD 640 (781)
Q Consensus 563 ~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~Lv--IVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~ 640 (781)
.+|++.+.+.+++++.+++ .|....++++++++.+..|+..|+ ++|++... ...+.+.+.+.|+.
T Consensus 432 ~~~lp~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~-----------~~~~~~~~~~~GI~ 498 (631)
T 3q3e_A 432 DYLLRENPEVVNIGIASTT--MKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGI-----------THPYVERFIKSYLG 498 (631)
T ss_dssp CCCCCSCCSEEEEEEEECS--TTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGG-----------GHHHHHHHHHHHHG
T ss_pred cccCCcCCCeEEEEECCcc--ccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchh-----------hHHHHHHHHHcCCC
Confidence 3565322335667777764 788999999999999888887765 35643220 11222334567888
Q ss_pred CcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccc------cCCeEEEEC
Q 003985 641 GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIE------HGASGFHID 714 (781)
Q Consensus 641 ~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~------dg~~G~lv~ 714 (781)
++|.|.| ..+..+....++. +|+++-|+.+.+ |+|.+|||+||+|||+...++...-+. -|..++++.
T Consensus 499 ~Rv~F~g----~~p~~e~la~y~~-aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA 572 (631)
T 3q3e_A 499 DSATAHP----HSPYHQYLRILHN-CDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIA 572 (631)
T ss_dssp GGEEEEC----CCCHHHHHHHHHT-CSEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEE
T ss_pred ccEEEcC----CCCHHHHHHHHhc-CcEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceec
Confidence 8999999 6777888888885 999999998765 999999999999999976555554442 244443232
Q ss_pred CCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--hcCcchhhhccchHHHHHhc
Q 003985 715 PYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYE--RLVVSSDGIVDPSPFVINVI 772 (781)
Q Consensus 715 p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~--~ysw~~~~il~~ye~ll~~~ 772 (781)
.|.++++++..++. .|++.+++++++.+++... -|+.....+.+.|+++++.+
T Consensus 573 -~d~eeYv~~Av~La----~D~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~~w 627 (631)
T 3q3e_A 573 -NTVDEYVERAVRLA----ENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNAF 627 (631)
T ss_dssp -SSHHHHHHHHHHHH----HCHHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHh----CCHHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHHHH
Confidence 27899999988877 8999999999999988655 45533345566666666655
No 48
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.28 E-value=4.4e-11 Score=141.36 Aligned_cols=263 Identities=10% Similarity=0.029 Sum_probs=169.6
Q ss_pred hhHHHHHHhhCCEEEecCHHHHhhcccc-ccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCC--CcHHHH
Q 003985 465 FTADLIAMNNADFIITSTYQEIAGTKNT-VGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFP--YSEKQK 541 (781)
Q Consensus 465 ~~~e~~a~~~AD~IIt~S~~~~~~~k~~-v~qy~s~~~f~lp~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p--~~~~~~ 541 (781)
+..-..++..|+.|-++|.--.+.+++. ++. +|+ ....+++-|.||||...+-. .+....
T Consensus 428 vnMa~lai~~S~~VNgVS~lH~e~ik~~~f~~-----------~~~------~~p~k~~~iTNGI~~rrWl~~~NP~l~~ 490 (824)
T 2gj4_A 428 INMAHLCIAGSHAVNGVARIHSEILKKTIFKD-----------FYE------LEPHKFQNKTNGITPRRWLVLCNPGLAE 490 (824)
T ss_dssp EEHHHHHHHTCSCEEESSHHHHHHHHHTTTHH-----------HHH------HCGGGEEECCCCBCTCCCCCCTCHHHHH
T ss_pred ccHHHHHHHhcCceeeEcHHHHHHHhhHHhHH-----------HHH------cChhhcccccCCcChhhhcccCCHhHHH
Confidence 3344568899999999998766655422 221 121 12568999999999988821 111111
Q ss_pred HHhh---------------hhcch--hhh--------ccCccc----cccccCCCCCCCCCEEEEEeeccCCCChHHH-H
Q 003985 542 RLTA---------------LHGSI--EQL--------LFDPEQ----NDEHVGTLSDRSKPIVFSMARLDHVKNMTGL-V 591 (781)
Q Consensus 542 rl~~---------------~~~~i--~~~--------l~~~~~----~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~L-i 591 (781)
.+.+ +.+-. +.+ ..++.. ..+..|+..+++.+.++++.|+..+|+.+.+ +
T Consensus 491 lI~~~ig~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l 570 (824)
T 2gj4_A 491 IIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCL 570 (824)
T ss_dssp HHHHHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHH
T ss_pred HHHHhcCchhhhCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHH
Confidence 1110 00000 000 011111 2344788778899999999999999999997 7
Q ss_pred HHHHHhhc--cCC-----CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcC----CCC--cEEEeccccCcCChHHH
Q 003985 592 ECYGKNSQ--LRE-----LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYK----LDG--QFRWIAAQTNRARNGEL 658 (781)
Q Consensus 592 eA~~~l~~--~~~-----~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~----L~~--~V~flG~~~~~v~~~el 658 (781)
..+.++.+ ..| ++++++.|.+.. .+...+..++.+.++++.++ +.+ +|.|+. .. +..+
T Consensus 571 ~~i~~~~~i~~~~~~~~~p~q~If~GKA~P----~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~----nY-dvsl 641 (824)
T 2gj4_A 571 HVITLYNRIKKEPNKFVVPRTVMIGGKAAP----GYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLE----NY-RVSL 641 (824)
T ss_dssp HHHHHHHHHHHCTTSCCCCEEEEEECCCCT----TCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEET----TC-CHHH
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEEEeCCH----hHHHHHHHHHHHHHHHHHhccCcccCCceEEEEEC----CC-CHHH
Confidence 77666631 122 578888888765 34445556666777777653 345 788885 33 3455
Q ss_pred HHHHHccCcEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCccccccccc--cCCeEEEECCCCHHHHHHHHH----HHHH
Q 003985 659 YRYIADTKGAFVQPAF--YEAFGLTVVEAMTCGLPTFATCHGGPAEIIE--HGASGFHIDPYHPDQAAELMA----DFFG 730 (781)
Q Consensus 659 ~~~la~aadvfV~PS~--~E~fGltvlEAMa~GlPVIaT~~GG~~EiI~--dg~~G~lv~p~d~e~lA~~I~----~~l~ 730 (781)
.+.+..++|++.+||. +|++|+.=+=||..|.++|+|-.|...|+.+ ..+|||+|... ++++ ..+. +..+
T Consensus 642 A~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~-~~ev-~~l~~~~~~a~~ 719 (824)
T 2gj4_A 642 AEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMR-VEDV-DRLDQRGYNAQE 719 (824)
T ss_dssp HHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCC-HHHH-HHHHHHCCCHHH
T ss_pred HHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeCCc-HHHH-HHHHHcCCCHHH
Confidence 5555557999999999 9999999999999999999999898888865 45689999875 6666 4441 1111
Q ss_pred hccCCHHHHHHHHHHHHHHHHHhcCcchh
Q 003985 731 KCKENPSHWKKISDGGLKRIYERLVVSSD 759 (781)
Q Consensus 731 ~l~~dp~~~~~~s~~a~~~v~~~ysw~~~ 759 (781)
....++ .|+++-+.+. ...|+|...
T Consensus 720 ~Y~~~~-~l~~v~d~i~---~g~fs~~~~ 744 (824)
T 2gj4_A 720 YYDRIP-ELRQIIEQLS---SGFFSPKQP 744 (824)
T ss_dssp HHHHCH-HHHHHHHHHH---HTTTCTTST
T ss_pred HhcCCH-HHHHHHHHHH---hCCCCCCCh
Confidence 112344 4455544443 467999664
No 49
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.24 E-value=4.2e-10 Score=125.27 Aligned_cols=136 Identities=11% Similarity=0.026 Sum_probs=95.4
Q ss_pred CCCEEEEEeec-cCCCChHHHHHHHHHhhccCCCeEEEEE-eCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 003985 571 SKPIVFSMARL-DHVKNMTGLVECYGKNSQLRELVNLVVV-AGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 648 (781)
Q Consensus 571 ~k~iIl~vGRL-~~~Kgl~~LieA~~~l~~~~~~~~LvIV-G~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~ 648 (781)
...++++.|++ ...|....++++++++. .+++++ |.+.. . ...+.++|++.+
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~~-----~~~v~~~g~~~~--------------~------~~~~~~~v~~~~- 291 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAHG-----RRVILSRGWADL--------------V------LPDDGADCFAIG- 291 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHTT-----CCEEECTTCTTC--------------C------CSSCGGGEEECS-
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHCC-----CeEEEEeCCCcc--------------c------ccCCCCCEEEeC-
Confidence 35678889999 58888888889987762 455555 55432 0 013457899998
Q ss_pred ccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCCeEEEECCC--CHHHHH
Q 003985 649 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--HPDQAA 722 (781)
Q Consensus 649 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG----~~EiI~dg~~G~lv~p~--d~e~lA 722 (781)
+++..++ +. ++|+||..+ -..++.|||++|+|+|+....+ .++.+++.+.|..+++. +.++++
T Consensus 292 ---~~~~~~~---l~-~~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~ 360 (415)
T 1iir_A 292 ---EVNHQVL---FG-RVAAVIHHG----GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLS 360 (415)
T ss_dssp ---SCCHHHH---GG-GSSEEEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHH
T ss_pred ---cCChHHH---Hh-hCCEEEeCC----ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHH
Confidence 5555555 45 699999863 2379999999999999986544 56667777789998754 788888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 003985 723 ELMADFFGKCKENPSHWKKISDGGLK 748 (781)
Q Consensus 723 ~~I~~~l~~l~~dp~~~~~~s~~a~~ 748 (781)
++|.+ + .|++.++++++.+.+
T Consensus 361 ~~i~~----l-~~~~~~~~~~~~~~~ 381 (415)
T 1iir_A 361 AALAT----A-LTPETHARATAVAGT 381 (415)
T ss_dssp HHHHH----H-TSHHHHHHHHHHHHH
T ss_pred HHHHH----H-cCHHHHHHHHHHHHH
Confidence 88854 4 688877776665543
No 50
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.20 E-value=5.9e-10 Score=123.99 Aligned_cols=135 Identities=11% Similarity=-0.015 Sum_probs=94.3
Q ss_pred CCCEEEEEeecc---CCCChHHHHHHHHHhhccCCCeEEEEE-eCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEe
Q 003985 571 SKPIVFSMARLD---HVKNMTGLVECYGKNSQLRELVNLVVV-AGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 646 (781)
Q Consensus 571 ~k~iIl~vGRL~---~~Kgl~~LieA~~~l~~~~~~~~LvIV-G~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~fl 646 (781)
...++++.|++. ..|.+..++++++++ +++++++ |.+.. + . ..+++++++.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~-------------~-~------~~~~~~v~~~ 291 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ-----GRRVILSRGWTEL-------------V-L------PDDRDDCFAI 291 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT-----TCCEEEECTTTTC-------------C-C------SCCCTTEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC-----CCeEEEEeCCccc-------------c-c------cCCCCCEEEe
Confidence 356788889985 467777788888765 3556665 54422 0 0 1356789999
Q ss_pred ccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCCeEEEECC--CCHHH
Q 003985 647 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIEHGASGFHIDP--YHPDQ 720 (781)
Q Consensus 647 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~G----G~~EiI~dg~~G~lv~p--~d~e~ 720 (781)
+ +++..++ +. ++|++|.- +-..|+.|||++|+|+|+.... ..++.+++.+.|..++. .+.++
T Consensus 292 ~----~~~~~~l---l~-~~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 359 (416)
T 1rrv_A 292 D----EVNFQAL---FR-RVAAVIHH----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFES 359 (416)
T ss_dssp S----SCCHHHH---GG-GSSEEEEC----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHH
T ss_pred c----cCChHHH---hc-cCCEEEec----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHH
Confidence 8 4555554 45 69999984 3356999999999999997543 35556777778998865 47888
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003985 721 AAELMADFFGKCKENPSHWKKISDGGL 747 (781)
Q Consensus 721 lA~~I~~~l~~l~~dp~~~~~~s~~a~ 747 (781)
++++|. ++ .|++.++++++.+.
T Consensus 360 l~~~i~----~l-~~~~~~~~~~~~~~ 381 (416)
T 1rrv_A 360 LSAALT----TV-LAPETRARAEAVAG 381 (416)
T ss_dssp HHHHHH----HH-TSHHHHHHHHHHTT
T ss_pred HHHHHH----Hh-hCHHHHHHHHHHHH
Confidence 888885 45 68888777766543
No 51
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.19 E-value=6.7e-11 Score=130.00 Aligned_cols=140 Identities=15% Similarity=0.194 Sum_probs=91.1
Q ss_pred CCCCEEEEEeeccCCCC-hHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 003985 570 RSKPIVFSMARLDHVKN-MTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 648 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~Kg-l~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~ 648 (781)
+..+++++.|++...++ ...+.+++..+.+ .+..+++++++.+.. ....++++|.+.+
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~--~~~~~v~~~~~~~~~------------------~~~~~~~~v~~~~- 294 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVAD--VDAEFVLTLGGGDLA------------------LLGELPANVRVVE- 294 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGG--SSSEEEEECCTTCCC------------------CCCCCCTTEEEEC-
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhc--cCceEEEEecCcccc------------------ccccCCCCEEEEe-
Confidence 34456777888876543 3444455555544 246667666554411 1124678899998
Q ss_pred ccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc----cccccccccCCeEEEECCCCHHHHHHH
Q 003985 649 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCH----GGPAEIIEHGASGFHIDPYHPDQAAEL 724 (781)
Q Consensus 649 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~----GG~~EiI~dg~~G~lv~p~d~e~lA~~ 724 (781)
+++..+++ . .+|+||.- +-..++.|||++|+|+|+... ...++.+++.+.|..+++. +..+++
T Consensus 295 ---~~p~~~lL---~-~~~~~v~h----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~--~~~~~a 361 (400)
T 4amg_A 295 ---WIPLGALL---E-TCDAIIHH----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAG--SLGAEQ 361 (400)
T ss_dssp ---CCCHHHHH---T-TCSEEEEC----CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTT--TCSHHH
T ss_pred ---ecCHHHHh---h-hhhheecc----CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCC--CchHHH
Confidence 55655554 5 59999874 345799999999999999643 3456666676788888754 446788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHH
Q 003985 725 MADFFGKCKENPSHWKKISDGGL 747 (781)
Q Consensus 725 I~~~l~~l~~dp~~~~~~s~~a~ 747 (781)
|.+++ +||+++++..+.+.
T Consensus 362 l~~lL----~d~~~r~~a~~l~~ 380 (400)
T 4amg_A 362 CRRLL----DDAGLREAALRVRQ 380 (400)
T ss_dssp HHHHH----HCHHHHHHHHHHHH
T ss_pred HHHHH----cCHHHHHHHHHHHH
Confidence 88777 79988877655443
No 52
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.02 E-value=8.3e-10 Score=107.32 Aligned_cols=134 Identities=11% Similarity=0.085 Sum_probs=100.9
Q ss_pred CCCEEEEEeecc---CCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEec
Q 003985 571 SKPIVFSMARLD---HVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIA 647 (781)
Q Consensus 571 ~k~iIl~vGRL~---~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG 647 (781)
...+++++|++. ..|++..++++++++ ++++++++++... -.+.++|++.|
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~~---------------------~~~~~~v~~~~ 74 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQI-----PQKVLWRFDGNKP---------------------DTLGLNTRLYK 74 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTS-----SSEEEEECCSSCC---------------------TTCCTTEEEES
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhC-----CCeEEEEECCcCc---------------------ccCCCcEEEec
Confidence 456788999986 667788888887543 3688888876541 02467899999
Q ss_pred cccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCCeEEEECCC--CHHHH
Q 003985 648 AQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIEHGASGFHIDPY--HPDQA 721 (781)
Q Consensus 648 ~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~G----G~~EiI~dg~~G~lv~p~--d~e~l 721 (781)
+++..++..+ + ++|++|.. +-+.|+.|||++|+|+|++... +.++.+++.+.|+.+++. +++++
T Consensus 75 ----~~~~~~~l~~-~-~ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l 144 (170)
T 2o6l_A 75 ----WIPQNDLLGH-P-KTRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDL 144 (170)
T ss_dssp ----SCCHHHHHTS-T-TEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHH
T ss_pred ----CCCHHHHhcC-C-CcCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHH
Confidence 4555565533 5 59999986 3469999999999999999764 456777888899999877 88999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHH
Q 003985 722 AELMADFFGKCKENPSHWKKISD 744 (781)
Q Consensus 722 A~~I~~~l~~l~~dp~~~~~~s~ 744 (781)
+++|.+++ .|++.++++.+
T Consensus 145 ~~~i~~ll----~~~~~~~~a~~ 163 (170)
T 2o6l_A 145 LNALKRVI----NDPSYKENVMK 163 (170)
T ss_dssp HHHHHHHH----HCHHHHHHHHH
T ss_pred HHHHHHHH----cCHHHHHHHHH
Confidence 99998887 78876555443
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.84 E-value=0.00019 Score=85.74 Aligned_cols=183 Identities=9% Similarity=0.017 Sum_probs=128.2
Q ss_pred cccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCC
Q 003985 560 NDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL 639 (781)
Q Consensus 560 ~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L 639 (781)
.+..+|+ +.+.+++++..++ .|=-...++.+.++.+..|+.+|++...... ..+.+.+.+++.|+
T Consensus 513 ~R~~~gL--p~~~v~f~~fN~~--~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~-----------~~~~l~~~~~~~gi 577 (723)
T 4gyw_A 513 TRSQYGL--PEDAIVYCNFNQL--YKIDPSTLQMWANILKRVPNSVLWLLRFPAV-----------GEPNIQQYAQNMGL 577 (723)
T ss_dssp EGGGGTC--CTTSEEEECCSCG--GGCCHHHHHHHHHHHHHCSSEEEEEEETTGG-----------GHHHHHHHHHHTTC
T ss_pred chhhcCC--CCCCEEEEeCCcc--ccCCHHHHHHHHHHHHhCCCCeEEEEeCcHH-----------HHHHHHHHHHhcCC
Confidence 3556787 5556555555554 4556788888888888889999999876543 14567888889998
Q ss_pred C-CcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcccccc-----cccc-CCeEEE
Q 003985 640 D-GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAE-----IIEH-GASGFH 712 (781)
Q Consensus 640 ~-~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG~~E-----iI~d-g~~G~l 712 (781)
+ ++|.|.+ ..+..+....+.. +|+++=|--|-| |.|..||+.+|+|||+-......- ++.. |-.-++
T Consensus 578 ~~~r~~f~~----~~~~~~~l~~~~~-~Di~LDt~p~~g-~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~i 651 (723)
T 4gyw_A 578 PQNRIIFSP----VAPKEEHVRRGQL-ADVCLDTPLCNG-HTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELI 651 (723)
T ss_dssp CGGGEEEEE----CCCHHHHHHHGGG-CSEEECCSSSCC-SHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGB
T ss_pred CcCeEEECC----CCCHHHHHHHhCC-CeEEeCCCCcCC-HHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccc
Confidence 4 6899998 5667788888885 999999876644 899999999999999863221111 1110 111222
Q ss_pred ECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHH
Q 003985 713 IDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVI 769 (781)
Q Consensus 713 v~p~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v~~~ysw~~~~il~~ye~ll 769 (781)
..|.++..+...++. .|++.+.++.+.-+++....-=++....++.+|+.+
T Consensus 652 --a~~~~~Y~~~a~~la----~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~ 702 (723)
T 4gyw_A 652 --AKNRQEYEDIAVKLG----TDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLY 702 (723)
T ss_dssp --CSSHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHH
Confidence 248899888887776 899999999998888876644445444444444443
No 54
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.82 E-value=0.011 Score=66.79 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=62.8
Q ss_pred CCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccc-cCCeEEEE
Q 003985 640 DGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIE-HGASGFHI 713 (781)
Q Consensus 640 ~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~G----G~~EiI~-dg~~G~lv 713 (781)
.+++...+ +++..+ +++. +.++||.= +-..++.||+++|+|+|+-... ..+..+. .-+.|..+
T Consensus 352 ~~~~~v~~----~~pq~~---~L~h~~~~~~vth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l 420 (482)
T 2pq6_A 352 ADRGLIAS----WCPQDK---VLNHPSIGGFLTH----CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI 420 (482)
T ss_dssp TTTEEEES----CCCHHH---HHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEEC
T ss_pred CCCEEEEe----ecCHHH---HhcCCCCCEEEec----CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEE
Confidence 46788887 455444 4542 13346664 2357999999999999997433 2344443 55678888
Q ss_pred CC-CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 003985 714 DP-YHPDQAAELMADFFGKCKENPSHWKKISDGGLKRI 750 (781)
Q Consensus 714 ~p-~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v 750 (781)
+. -+.++++++|.+++ .|++ .+++.+++++..
T Consensus 421 ~~~~~~~~l~~~i~~ll----~~~~-~~~~r~~a~~l~ 453 (482)
T 2pq6_A 421 DTNVKREELAKLINEVI----AGDK-GKKMKQKAMELK 453 (482)
T ss_dssp CSSCCHHHHHHHHHHHH----TSHH-HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH----cCCc-HHHHHHHHHHHH
Confidence 62 37889999998877 7876 356666665544
No 55
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.73 E-value=0.0026 Score=71.67 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=64.2
Q ss_pred CCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc----cccccccccC-CeEEEE
Q 003985 640 DGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCH----GGPAEIIEHG-ASGFHI 713 (781)
Q Consensus 640 ~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~----GG~~EiI~dg-~~G~lv 713 (781)
.+++...+ +++.. .+++. ++|+||.= +-..++.||+++|+|+|+-.. ...+..+++. +.|..+
T Consensus 324 ~~~~~v~~----w~pq~---~vL~h~~~~~fvth----~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l 392 (456)
T 2c1x_A 324 RGYGMVVP----WAPQA---EVLAHEAVGAFVTH----CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI 392 (456)
T ss_dssp TTTEEEES----CCCHH---HHHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEEC
T ss_pred CCceEEec----CCCHH---HHhcCCcCCEEEec----CCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEe
Confidence 36788887 44443 34552 25677764 235799999999999999743 2344556666 788888
Q ss_pred CCC--CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 003985 714 DPY--HPDQAAELMADFFGKCKENPSHWKKISDGGLKRI 750 (781)
Q Consensus 714 ~p~--d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~v 750 (781)
+.. +.++++++|.+++ .|++ .+++.+++++..
T Consensus 393 ~~~~~~~~~l~~~i~~ll----~~~~-~~~~r~~a~~l~ 426 (456)
T 2c1x_A 393 EGGVFTKSGLMSCFDQIL----SQEK-GKKLRENLRALR 426 (456)
T ss_dssp GGGSCCHHHHHHHHHHHH----HSHH-HHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHH----CCCc-HHHHHHHHHHHH
Confidence 632 6889999998877 6775 455666555543
No 56
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.72 E-value=0.012 Score=66.64 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=45.3
Q ss_pred HHHHccCc--EEEEcCCCCCCcHHHHHHHHcCCcEEEcCc----ccccccc-ccCCeEEEECCC-----CHHHHHHHHHH
Q 003985 660 RYIADTKG--AFVQPAFYEAFGLTVVEAMTCGLPTFATCH----GGPAEII-EHGASGFHIDPY-----HPDQAAELMAD 727 (781)
Q Consensus 660 ~~la~aad--vfV~PS~~E~fGltvlEAMa~GlPVIaT~~----GG~~EiI-~dg~~G~lv~p~-----d~e~lA~~I~~ 727 (781)
.+++ .++ +||.= +--.+++||+++|+|+|+--. ...+..+ +.-+.|..++.. +.++++++|.+
T Consensus 351 ~vL~-h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~ 425 (480)
T 2vch_A 351 QVLA-HPSTGGFLTH----CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKG 425 (480)
T ss_dssp HHHH-STTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHH
T ss_pred HHhC-CCCcCeEEec----ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHHHHHHHHHH
Confidence 4444 466 45553 224689999999999999743 2344443 566788887643 78899999988
Q ss_pred HH
Q 003985 728 FF 729 (781)
Q Consensus 728 ~l 729 (781)
++
T Consensus 426 vl 427 (480)
T 2vch_A 426 LM 427 (480)
T ss_dssp HH
T ss_pred Hh
Confidence 87
No 57
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.60 E-value=0.015 Score=65.50 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=53.4
Q ss_pred CcEEEeccccCcCChHHHHHHHH-ccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccc-cccCCeEEEE-
Q 003985 641 GQFRWIAAQTNRARNGELYRYIA-DTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEI-IEHGASGFHI- 713 (781)
Q Consensus 641 ~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~G----G~~Ei-I~dg~~G~lv- 713 (781)
+++...+ +++..+ +++ .++|+||.=. -..++.||+++|+|+|+-... ..+.. ++.-+.|..+
T Consensus 332 ~~~~v~~----w~pq~~---vL~h~~~~~fvth~----G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~ 400 (463)
T 2acv_A 332 GKGMICG----WAPQVE---VLAHKAIGGFVSHC----GWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLR 400 (463)
T ss_dssp CSEEEES----SCCHHH---HHHSTTEEEEEECC----CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESC
T ss_pred CCEEEEc----cCCHHH---HhCCCccCeEEecC----CchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEe
Confidence 4677777 444444 444 1367777752 357999999999999997432 33444 4666789888
Q ss_pred C---C----CCHHHHHHHHHHHH
Q 003985 714 D---P----YHPDQAAELMADFF 729 (781)
Q Consensus 714 ~---p----~d~e~lA~~I~~~l 729 (781)
+ . -+.++++++|.+++
T Consensus 401 ~~~~~~~~~~~~~~l~~ai~~ll 423 (463)
T 2acv_A 401 VDYRKGSDVVAAEEIEKGLKDLM 423 (463)
T ss_dssp SSCCTTCCCCCHHHHHHHHHHHT
T ss_pred cccCCCCccccHHHHHHHHHHHH
Confidence 2 2 37889999998776
No 58
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.58 E-value=0.0084 Score=67.56 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=62.0
Q ss_pred CCcEEEeccccCcCChHHHHHHHHccCc--EEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccC-CeEEE
Q 003985 640 DGQFRWIAAQTNRARNGELYRYIADTKG--AFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIEHG-ASGFH 712 (781)
Q Consensus 640 ~~~V~flG~~~~~v~~~el~~~la~aad--vfV~PS~~E~fGltvlEAMa~GlPVIaT~~G----G~~EiI~dg-~~G~l 712 (781)
.+++...+ +++..++. + .++ +||.=. -..+++||+++|+|+|+--.. -.+..+++. +.|..
T Consensus 326 ~~~~~vv~----w~Pq~~vL---~-h~~v~~fvtH~----G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~ 393 (454)
T 3hbf_A 326 KTKGKIVA----WAPQVEIL---K-HSSVGVFLTHS----GWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVG 393 (454)
T ss_dssp TTTEEEES----SCCHHHHH---H-STTEEEEEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEE
T ss_pred CCceEEEe----eCCHHHHH---h-hcCcCeEEecC----CcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEE
Confidence 46788888 55554444 4 477 566542 246899999999999997432 344456664 78888
Q ss_pred ECC--CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 003985 713 IDP--YHPDQAAELMADFFGKCKENPSHWKKISDGGLKR 749 (781)
Q Consensus 713 v~p--~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~ 749 (781)
++. -+.++++++|.+++ .++ ..+++++++++.
T Consensus 394 l~~~~~~~~~l~~av~~ll----~~~-~~~~~r~~a~~l 427 (454)
T 3hbf_A 394 VDNGVLTKESIKKALELTM----SSE-KGGIMRQKIVKL 427 (454)
T ss_dssp CGGGSCCHHHHHHHHHHHH----SSH-HHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHH----CCC-hHHHHHHHHHHH
Confidence 864 46889999998877 664 234455555443
No 59
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.37 E-value=0.0069 Score=64.83 Aligned_cols=100 Identities=17% Similarity=0.052 Sum_probs=65.9
Q ss_pred CCEEEEEee-ccCCCChH--HHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcC--C-CCcEEE
Q 003985 572 KPIVFSMAR-LDHVKNMT--GLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYK--L-DGQFRW 645 (781)
Q Consensus 572 k~iIl~vGR-L~~~Kgl~--~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~--L-~~~V~f 645 (781)
+.+++..|. ..+.|.+. .+.+++..+.+. +++++++|+..+ .+...++.+..+ . ...+.+
T Consensus 181 ~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e------------~~~~~~i~~~~~~~~~~~~~~l 246 (348)
T 1psw_A 181 PMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKD------------HEAGNEILAALNTEQQAWCRNL 246 (348)
T ss_dssp CEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGG------------HHHHHHHHTTSCHHHHTTEEEC
T ss_pred cEEEEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhh------------HHHHHHHHHhhhhccccceEec
Confidence 345566676 55667766 788888877654 689999886543 223333333221 0 122456
Q ss_pred eccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc
Q 003985 646 IAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT 695 (781)
Q Consensus 646 lG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT 695 (781)
.| ..+..++..+++. +|++|... .|. +..|.++|+|+|+-
T Consensus 247 ~g----~~sl~e~~ali~~-a~l~I~~D----sg~-~HlAaa~g~P~v~l 286 (348)
T 1psw_A 247 AG----ETQLDQAVILIAA-CKAIVTND----SGL-MHVAAALNRPLVAL 286 (348)
T ss_dssp TT----TSCHHHHHHHHHT-SSEEEEES----SHH-HHHHHHTTCCEEEE
T ss_pred cC----cCCHHHHHHHHHh-CCEEEecC----CHH-HHHHHHcCCCEEEE
Confidence 66 5678899999995 99999985 244 44499999999985
No 60
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.37 E-value=0.0056 Score=64.63 Aligned_cols=94 Identities=13% Similarity=0.154 Sum_probs=61.6
Q ss_pred CCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccC
Q 003985 572 KPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTN 651 (781)
Q Consensus 572 k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~ 651 (781)
+.+++++|..+...-...+++++.+. .. -.+|.|.+.. ..+++++.+++. +++++.++..
T Consensus 158 ~~ILv~~GG~d~~~l~~~vl~~L~~~----~~-i~vv~G~~~~-----------~~~~l~~~~~~~---~~v~v~~~~~- 217 (282)
T 3hbm_A 158 YDFFICMGGTDIKNLSLQIASELPKT----KI-ISIATSSSNP-----------NLKKLQKFAKLH---NNIRLFIDHE- 217 (282)
T ss_dssp EEEEEECCSCCTTCHHHHHHHHSCTT----SC-EEEEECTTCT-----------THHHHHHHHHTC---SSEEEEESCS-
T ss_pred CeEEEEECCCchhhHHHHHHHHhhcC----CC-EEEEECCCch-----------HHHHHHHHHhhC---CCEEEEeCHH-
Confidence 34677888776544333445544322 12 3455666643 145566655543 4799998654
Q ss_pred cCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 003985 652 RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATC 696 (781)
Q Consensus 652 ~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~ 696 (781)
++..+|+. ||+.|.++ |.|+.|++++|+|+|.-.
T Consensus 218 -----~m~~~m~~-aDlvI~~g-----G~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 218 -----NIAKLMNE-SNKLIISA-----SSLVNEALLLKANFKAIC 251 (282)
T ss_dssp -----CHHHHHHT-EEEEEEES-----SHHHHHHHHTTCCEEEEC
T ss_pred -----HHHHHHHH-CCEEEECC-----cHHHHHHHHcCCCEEEEe
Confidence 47788884 99999952 689999999999999864
No 61
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=96.39 E-value=0.17 Score=54.51 Aligned_cols=103 Identities=14% Similarity=0.154 Sum_probs=68.6
Q ss_pred CCCCCE-EEEEeeccCCCCh--HHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEE
Q 003985 569 DRSKPI-VFSMARLDHVKNM--TGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRW 645 (781)
Q Consensus 569 ~~~k~i-Il~vGRL~~~Kgl--~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~f 645 (781)
++++++ .+..|.=...|.+ +.+.+.+..+.+. +++++++|+..+ .+..+++++.++ ...+.+
T Consensus 182 ~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e------------~~~~~~i~~~~~-~~~~~l 246 (349)
T 3tov_A 182 TDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMD------------LEMVQPVVEQME-TKPIVA 246 (349)
T ss_dssp CTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTT------------HHHHHHHHHTCS-SCCEEC
T ss_pred CCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcch------------HHHHHHHHHhcc-cccEEe
Confidence 334454 4556654456665 4677777777654 578888876543 334445555544 233566
Q ss_pred eccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 003985 646 IAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATC 696 (781)
Q Consensus 646 lG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~ 696 (781)
.| ..+-.++..+++. +|++|..- .|..-+ |.++|+|+|+--
T Consensus 247 ~g----~~sl~e~~ali~~-a~~~i~~D----sG~~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 247 TG----KFQLGPLAAAMNR-CNLLITND----SGPMHV-GISQGVPIVALY 287 (349)
T ss_dssp TT----CCCHHHHHHHHHT-CSEEEEES----SHHHHH-HHTTTCCEEEEC
T ss_pred eC----CCCHHHHHHHHHh-CCEEEECC----CCHHHH-HHhcCCCEEEEE
Confidence 66 6778899999995 99999982 255555 999999999963
No 62
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=95.67 E-value=0.084 Score=62.75 Aligned_cols=142 Identities=11% Similarity=0.015 Sum_probs=101.5
Q ss_pred CCCCC-----CCCCEEEEEeeccCCCChHH-HHHH---HHHhhcc-------------CCCeEEEEEeCcCCCCCCcchH
Q 003985 565 GTLSD-----RSKPIVFSMARLDHVKNMTG-LVEC---YGKNSQL-------------RELVNLVVVAGYIDVNKSKDRE 622 (781)
Q Consensus 565 g~l~~-----~~k~iIl~vGRL~~~Kgl~~-LieA---~~~l~~~-------------~~~~~LvIVG~g~~~~~~~d~e 622 (781)
|+..+ ++...++++-|+..+|.... ++.. +.+++.. .....+++.|.... .|..
T Consensus 588 g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP----~y~~ 663 (879)
T 1ygp_A 588 GVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAP----GYYM 663 (879)
T ss_dssp TCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCT----TCHH
T ss_pred CcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCC----CcHH
Confidence 66557 78889999999999999988 4544 4333332 12356665555433 2444
Q ss_pred HHHHHHHHHHHHHHc----CCCC--cEEEeccccCcCChHHHHHHHHccCcEEEEcCC--CCCCcHHHHHHHHcCCcEEE
Q 003985 623 EIAEIEKMHELMKTY----KLDG--QFRWIAAQTNRARNGELYRYIADTKGAFVQPAF--YEAFGLTVVEAMTCGLPTFA 694 (781)
Q Consensus 623 e~~~~~~l~~li~el----~L~~--~V~flG~~~~~v~~~el~~~la~aadvfV~PS~--~E~fGltvlEAMa~GlPVIa 694 (781)
....++.+.+.++-. .+.+ +|.|+. .... .+.+.+-.++|+-.+-|. .|+.|..=+=+|.-|.++|+
T Consensus 664 aK~iIklI~~va~~iN~Dp~v~~~LKVVFle----nY~V-slAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlg 738 (879)
T 1ygp_A 664 AKLIIKLINCVADIVNNDESIEHLLKVVFVA----DYNV-SKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIG 738 (879)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGTTSEEEEEET----TCCH-HHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHhccChhhCCceEEEEeC----CCCH-HHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeee
Confidence 455556666666522 2445 789997 3444 455555557999999875 79999999999999999999
Q ss_pred cCcccccccccc--CCeEEEECC
Q 003985 695 TCHGGPAEIIEH--GASGFHIDP 715 (781)
Q Consensus 695 T~~GG~~EiI~d--g~~G~lv~p 715 (781)
|-.|...|+.++ .+|+|+|-.
T Consensus 739 tlDGanvEi~e~vG~eN~fiFG~ 761 (879)
T 1ygp_A 739 TVDGANVEITREIGEDNVFLFGN 761 (879)
T ss_dssp ESCTHHHHHHHHHCGGGSEEESC
T ss_pred cccchhHHHHHHcCcccEEEccC
Confidence 999999999876 558999864
No 63
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=87.34 E-value=1.7 Score=45.70 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=64.5
Q ss_pred CCEEEEEeeccCCCChH--HHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccc
Q 003985 572 KPIVFSMARLDHVKNMT--GLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQ 649 (781)
Q Consensus 572 k~iIl~vGRL~~~Kgl~--~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~ 649 (781)
+.+++..|.=...|... .+.+.+..+.+. +++++++++++. +.+..+++.+.. +++.+.|
T Consensus 179 ~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~~g~~~-----------e~~~~~~i~~~~---~~~~l~g-- 240 (326)
T 2gt1_A 179 EYAVFLHATTRDDKHWPEEHWRELIGLLADS--GIRIKLPWGAPH-----------EEERAKRLAEGF---AYVEVLP-- 240 (326)
T ss_dssp SEEEEECCCSSGGGSCCHHHHHHHHHHTTTT--CCEEEECCSSHH-----------HHHHHHHHHTTC---TTEEECC--
T ss_pred CEEEEEeCCCCccccCCHHHHHHHHHHHHHC--CCcEEEecCCHH-----------HHHHHHHHHhhC---CcccccC--
Confidence 34555566545566665 777777777542 688888755532 122333343332 3466777
Q ss_pred cCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc
Q 003985 650 TNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT 695 (781)
Q Consensus 650 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT 695 (781)
..+-.|+..+++. +|++|..-. |..=+ |.|.|+|+|+-
T Consensus 241 --~~sl~el~ali~~-a~l~I~~DS----G~~Hl-Aaa~g~P~v~l 278 (326)
T 2gt1_A 241 --KMSLEGVARVLAG-AKFVVSVDT----GLSHL-TAALDRPNITV 278 (326)
T ss_dssp --CCCHHHHHHHHHT-CSEEEEESS----HHHHH-HHHTTCCEEEE
T ss_pred --CCCHHHHHHHHHh-CCEEEecCC----cHHHH-HHHcCCCEEEE
Confidence 6778999999995 999999832 55555 77799999985
No 64
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=83.48 E-value=0.74 Score=46.67 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=41.6
Q ss_pred HHHHHHH-ccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc---c-----ccccccCCeEEEECCCCHHHHHHHHHH
Q 003985 657 ELYRYIA-DTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG---P-----AEIIEHGASGFHIDPYHPDQAAELMAD 727 (781)
Q Consensus 657 el~~~la-~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~GG---~-----~EiI~dg~~G~lv~p~d~e~lA~~I~~ 727 (781)
++..+|+ . +|++|.=+ -..|+.|++++|+|.|.-.... . ++.+.+.+.++.+ +++.++++|.+
T Consensus 124 ~m~~~l~~~-AdlvIsha----GagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~---~~~~L~~~i~~ 195 (224)
T 2jzc_A 124 KMQSIIRDY-SDLVISHA----GTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC---APTETGLIAGL 195 (224)
T ss_dssp SHHHHHHHH-CSCEEESS----CHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE---CSCTTTHHHHH
T ss_pred hHHHHHHhc-CCEEEECC----cHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc---CHHHHHHHHHH
Confidence 5677888 7 99988853 3579999999999999864432 1 3334333345555 34555566554
Q ss_pred H
Q 003985 728 F 728 (781)
Q Consensus 728 ~ 728 (781)
+
T Consensus 196 l 196 (224)
T 2jzc_A 196 R 196 (224)
T ss_dssp H
T ss_pred H
Confidence 3
No 65
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=66.46 E-value=47 Score=29.57 Aligned_cols=109 Identities=8% Similarity=0.148 Sum_probs=72.9
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH----------ccCcEEEEcC
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA----------DTKGAFVQPA 673 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la----------~aadvfV~PS 673 (781)
.+++||.+.+. ....+....++.|....|.... +..+....+. ...|++++=.
T Consensus 5 ~~ILivddd~~-----------~~~~l~~~L~~~g~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~~~dliilD~ 67 (152)
T 3heb_A 5 VTIVMIEDDLG-----------HARLIEKNIRRAGVNNEIIAFT------DGTSALNYLFGDDKSGRVSAGRAQLVLLDL 67 (152)
T ss_dssp CEEEEECCCHH-----------HHHHHHHHHHHTTCCCCEEEES------SHHHHHHHHHCTTSSSGGGTTCBEEEEECS
T ss_pred ceEEEEeCCHH-----------HHHHHHHHHHhCCCcceEEEeC------CHHHHHHHHhccccccccccCCCCEEEEeC
Confidence 57788877643 4567777788877644566554 2456666663 2357777643
Q ss_pred -CCCCCcHHHHHHHHc-----CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 674 -FYEAFGLTVVEAMTC-----GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 674 -~~E~fGltvlEAMa~-----GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
..+.-|+.+++.+.. ++|+|.. .... ..+.+..|..+++..|.+.+++.++|.++.
T Consensus 68 ~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 68 NLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp BCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 345567888887754 6788774 3332 234556788999999999999999987654
No 66
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=66.22 E-value=22 Score=41.88 Aligned_cols=65 Identities=9% Similarity=0.054 Sum_probs=42.3
Q ss_pred HHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc---------cccccccccCCeEEEECCCCHHHHHHHHHH
Q 003985 657 ELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCH---------GGPAEIIEHGASGFHIDPYHPDQAAELMAD 727 (781)
Q Consensus 657 el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVIaT~~---------GG~~EiI~dg~~G~lv~p~d~e~lA~~I~~ 727 (781)
++..++. .+|++|.= ++-++.|++..++|||-... .|.---..+..-|-++. |.+++.++|.+
T Consensus 608 di~~ll~-~aD~lITD-----ySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~pg~~~~--~~~eL~~~i~~ 679 (729)
T 3l7i_A 608 DVSELFL-ISDCLITD-----YSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLPGPIYT--EPYGLAKELKN 679 (729)
T ss_dssp CHHHHHH-TCSEEEES-----SCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSSSCEES--SHHHHHHHHTT
T ss_pred CHHHHHH-HhCEEEee-----chHHHHhHHhhCCCEEEecCCHHHHhhccCCcccChhHhCCCCeEC--CHHHHHHHHhh
Confidence 4666777 59999875 57799999999999998721 11110111122344443 78899888865
Q ss_pred HH
Q 003985 728 FF 729 (781)
Q Consensus 728 ~l 729 (781)
+.
T Consensus 680 ~~ 681 (729)
T 3l7i_A 680 LD 681 (729)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 67
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=65.50 E-value=64 Score=27.74 Aligned_cols=109 Identities=8% Similarity=0.061 Sum_probs=71.3
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc--------cCcEEEEcCC-
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--------TKGAFVQPAF- 674 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~--------aadvfV~PS~- 674 (781)
.+++|+.+.+. ..+.+....++.|....|.... +..+....+.. ..|++++=..
T Consensus 3 ~~ilivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~ 65 (140)
T 1k68_A 3 KKIFLVEDNKA-----------DIRLIQEALANSTVPHEVVTVR------DGMEAMAYLRQEGEYANASRPDLILLXLNL 65 (140)
T ss_dssp CEEEEECCCHH-----------HHHHHHHHHHTCSSCCEEEEEC------SHHHHHHHHTTCGGGGSCCCCSEEEECSSC
T ss_pred CeEEEEeCCHH-----------HHHHHHHHHHhcCCCceEEEEC------CHHHHHHHHHcccccccCCCCcEEEEecCC
Confidence 46777776643 3566777777666433455543 24566676663 4677777443
Q ss_pred CCCCcHHHHHHHH-----cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 675 YEAFGLTVVEAMT-----CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 675 ~E~fGltvlEAMa-----~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.+.-|+.+++.+. ..+|+|.- .... ..+.+..|..|++..|.+.+++...|..++
T Consensus 66 ~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 129 (140)
T 1k68_A 66 PKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIE 129 (140)
T ss_dssp SSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHH
Confidence 3456777777765 46788764 3332 234456788999999999999999997766
No 68
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=65.14 E-value=13 Score=37.35 Aligned_cols=22 Identities=5% Similarity=0.073 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHcCCCceEEEEcCC
Q 003985 392 FTEDVGSEITAELQGFPDFIIGNYS 416 (781)
Q Consensus 392 f~~~~~~~i~~~l~~~pDIIh~~~~ 416 (781)
....+.+.+.+. +||+|++++.
T Consensus 83 ~~~~l~~~ir~~---~P~~V~t~~~ 104 (227)
T 1uan_A 83 QRLKLAQALRRL---RPRVVFAPLE 104 (227)
T ss_dssp HHHHHHHHHHHH---CEEEEEEECS
T ss_pred HHHHHHHHHHHh---CCCEEEeCCC
Confidence 344555556555 8999998764
No 69
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=64.85 E-value=72 Score=27.90 Aligned_cols=107 Identities=10% Similarity=0.110 Sum_probs=70.5
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc--cCcEEEEcCCC-C-CCc
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPAFY-E-AFG 679 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~~-E-~fG 679 (781)
.+++||.+.+. ....+....++.|. .|.... +..+....+.. ..|++++-... + .-|
T Consensus 6 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g 66 (140)
T 3h5i_A 6 KKILIVEDSKF-----------QAKTIANILNKYGY--TVEIAL------TGEAAVEKVSGGWYPDLILMDIELGEGMDG 66 (140)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTTCCCSEEEEESSCSSSCCH
T ss_pred cEEEEEeCCHH-----------HHHHHHHHHHHcCC--EEEEec------ChHHHHHHHhcCCCCCEEEEeccCCCCCCH
Confidence 57778877643 35667777777653 344332 34566666653 35777775433 3 567
Q ss_pred HHHHHHHH--cCCcEEEc-Ccc---ccccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 680 LTVVEAMT--CGLPTFAT-CHG---GPAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 680 ltvlEAMa--~GlPVIaT-~~G---G~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
+.+++.+. ..+|+|.- ... ...+.+..|..+++..|.+.+++.+.|..++
T Consensus 67 ~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 67 VQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp HHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 77776654 47888874 322 2345566788999999999999999998776
No 70
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=59.98 E-value=56 Score=28.67 Aligned_cols=111 Identities=13% Similarity=0.144 Sum_probs=72.5
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++||.+.+. ....+....++.+....|.... +..+....+.. ..|++++=. ..+.-|+
T Consensus 5 ~~~ILivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~ 67 (144)
T 3kht_A 5 SKRVLVVEDNPD-----------DIALIRRVLDRKDIHCQLEFVD------NGAKALYQVQQAKYDLIILDIGLPIANGF 67 (144)
T ss_dssp CEEEEEECCCHH-----------HHHHHHHHHHHTTCCEEEEEES------SHHHHHHHHTTCCCSEEEECTTCGGGCHH
T ss_pred CCEEEEEeCCHH-----------HHHHHHHHHHhcCCCeeEEEEC------CHHHHHHHhhcCCCCEEEEeCCCCCCCHH
Confidence 367788877643 3566777777776543344443 24455655543 246666643 3455678
Q ss_pred HHHHHHHc-----CCcEEEc-Cccc---cccccccCCeEEEECCC-CHHHHHHHHHHHHH
Q 003985 681 TVVEAMTC-----GLPTFAT-CHGG---PAEIIEHGASGFHIDPY-HPDQAAELMADFFG 730 (781)
Q Consensus 681 tvlEAMa~-----GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~-d~e~lA~~I~~~l~ 730 (781)
.+++.+.. ++|+|+. .... ..+.+..|..+++..|. +.+++.++|..+++
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 68 EVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp HHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 88888765 6888874 3322 23455678999999999 99999999987763
No 71
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=58.88 E-value=77 Score=27.61 Aligned_cols=110 Identities=11% Similarity=0.146 Sum_probs=72.2
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH-----------ccCcEEEE
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA-----------DTKGAFVQ 671 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la-----------~aadvfV~ 671 (781)
..+++||.+.+. ....+....++.|....|.... +..+....+. ...|++++
T Consensus 6 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~~~~dlvi~ 68 (149)
T 1k66_A 6 TQPLLVVEDSDE-----------DFSTFQRLLQREGVVNPIYRCI------TGDQALDFLYQTGSYCNPDIAPRPAVILL 68 (149)
T ss_dssp TSCEEEECCCHH-----------HHHHHHHHHHHTTBCSCEEEEC------SHHHHHHHHHTCCSSSCGGGCCCCSEEEE
T ss_pred CccEEEEECCHH-----------HHHHHHHHHHHcCCCceEEEEC------CHHHHHHHHHhcccccCcccCCCCcEEEE
Confidence 356777776643 3566777777776533455543 2456666665 24677777
Q ss_pred cCC-CCCCcHHHHHHHH-----cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 672 PAF-YEAFGLTVVEAMT-----CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 672 PS~-~E~fGltvlEAMa-----~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
=.. .+.-|+.+++.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++.+.|..++
T Consensus 69 D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 136 (149)
T 1k66_A 69 DLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFI 136 (149)
T ss_dssp CSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 443 3456778888775 46787764 3332 233456788999999999999999997765
No 72
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=57.42 E-value=52 Score=28.61 Aligned_cols=106 Identities=7% Similarity=0.042 Sum_probs=66.6
Q ss_pred CCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCCCCCCcH
Q 003985 602 ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAFYEAFGL 680 (781)
Q Consensus 602 ~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGl 680 (781)
...+++|+.+.+. ..+.+....++.|. .|.... +..+....+.. ..|++++| +.-|+
T Consensus 17 ~~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlvi~~---~~~g~ 74 (137)
T 2pln_A 17 GSMRVLLIEKNSV-----------LGGEIEKGLNVKGF--MADVTE------SLEDGEYLMDIRNYDLVMVS---DKNAL 74 (137)
T ss_dssp TCSEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHHHHHSCCSEEEEC---STTHH
T ss_pred CCCeEEEEeCCHH-----------HHHHHHHHHHHcCc--EEEEeC------CHHHHHHHHHcCCCCEEEEc---CccHH
Confidence 3467788877643 35566666666554 344332 23455555442 35777733 34466
Q ss_pred HHHHHHH--c-CCcEEEc-Cccc---cccccccCCeEEEECCC-CHHHHHHHHHHHH
Q 003985 681 TVVEAMT--C-GLPTFAT-CHGG---PAEIIEHGASGFHIDPY-HPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa--~-GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~-d~e~lA~~I~~~l 729 (781)
.+++.+. . .+|+|.. .... ..+.+..|..+++..|. +.+++...|..++
T Consensus 75 ~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 131 (137)
T 2pln_A 75 SFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARL 131 (137)
T ss_dssp HHHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHH
Confidence 6666664 3 7888764 3332 33455678899999999 9999999997765
No 73
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=57.27 E-value=68 Score=28.15 Aligned_cols=109 Identities=9% Similarity=0.133 Sum_probs=70.1
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++||.+.+. ....+....++.|. .|.... +..+....+.. ..|++++=. ..+.-|+
T Consensus 8 ~~~iLivd~~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~ 68 (147)
T 2zay_A 8 WWRIMLVDTQLP-----------ALAASISALSQEGF--DIIQCG------NAIEAVPVAVKTHPHLIITEANMPKISGM 68 (147)
T ss_dssp CEEEEEECTTGG-----------GGHHHHHHHHHHTE--EEEEES------SHHHHHHHHHHHCCSEEEEESCCSSSCHH
T ss_pred CceEEEEeCCHH-----------HHHHHHHHHHHcCC--eEEEeC------CHHHHHHHHHcCCCCEEEEcCCCCCCCHH
Confidence 467888887754 24456666666553 344332 23455555442 357777643 3355678
Q ss_pred HHHHHHHc-----CCcEEEc-Ccccc---ccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003985 681 TVVEAMTC-----GLPTFAT-CHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 681 tvlEAMa~-----GlPVIaT-~~GG~---~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~ 730 (781)
.+++.+.. .+|||+- ..... .+.+..|..+++..|.+.+++...|..++.
T Consensus 69 ~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 69 DLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp HHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 88888764 6787764 43332 334567889999999999999999988764
No 74
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=57.18 E-value=1.3e+02 Score=31.37 Aligned_cols=148 Identities=11% Similarity=-0.005 Sum_probs=89.3
Q ss_pred CEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCC-cEEEeccccC
Q 003985 573 PIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDG-QFRWIAAQTN 651 (781)
Q Consensus 573 ~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~-~V~flG~~~~ 651 (781)
+.++.+..=.+.|.+..|+++.++.+. .+++-..|.|.. . .-....+.+..|+.- +|.|.|
T Consensus 116 ~~~lvv~~ds~~~tl~dL~~~ak~~p~---~~~~g~~g~Gs~----------~-hl~~~~l~~~~Gi~~~~Vpy~G---- 177 (314)
T 2dvz_A 116 ANVVAVNPKFPAKDFKGFLEELKKNPG---KYSYGSSGTCGV----------L-HLMGESFKMATGTDIVHVPYKG---- 177 (314)
T ss_dssp CEEEEECTTSSCSSHHHHHHHHHTSTT---TCEEEESCTTSH----------H-HHHHHHHHHHHTCCCEEEECSS----
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHhCCC---cEEEeCCCCCcH----------H-HHHHHHHHHHhCCCeEEcccCC----
Confidence 345555544578999999998776543 255544443322 0 112233445667642 344444
Q ss_pred cCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCc-EEEc----------Cccc-----cccccccCCeEEEECC
Q 003985 652 RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLP-TFAT----------CHGG-----PAEIIEHGASGFHIDP 715 (781)
Q Consensus 652 ~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlP-VIaT----------~~GG-----~~EiI~dg~~G~lv~p 715 (781)
..+.+..++....|+.+... -.+.+....|.- +++. +++- ...+....-.|+.+++
T Consensus 178 --~~~a~~al~~G~vD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~ 249 (314)
T 2dvz_A 178 --SGPAVADAVGGQIELIFDNL------PSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPK 249 (314)
T ss_dssp --HHHHHHHHHHTSSSEEEEEH------HHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEET
T ss_pred --HHHHHHHHHcCCceEEEEcH------HHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcC
Confidence 24567777887788887753 255666677742 3332 1111 1111112236888998
Q ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003985 716 YHPDQAAELMADFFGKCKENPSHWKKISDGG 746 (781)
Q Consensus 716 ~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a 746 (781)
+.++++.++|.+.+.+...||+..+.+.+.+
T Consensus 250 g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g 280 (314)
T 2dvz_A 250 GTPMDVVNKLRDAAVVALKDPKVIKALDDQG 280 (314)
T ss_dssp TCCHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 8899999999999988889999888876654
No 75
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=56.00 E-value=6.2 Score=40.55 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=26.4
Q ss_pred eEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEcc
Q 003985 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 279 ~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~ 340 (781)
|||+|....|+. |. .|+++|.++||+|+ +++|.
T Consensus 1 MkILVTGatGfI-----------G~--------------~L~~~L~~~G~~V~----~l~R~ 33 (298)
T 4b4o_A 1 MRVLVGGGTGFI-----------GT--------------ALTQLLNARGHEVT----LVSRK 33 (298)
T ss_dssp CEEEEETTTSHH-----------HH--------------HHHHHHHHTTCEEE----EEESS
T ss_pred CEEEEECCCCHH-----------HH--------------HHHHHHHHCCCEEE----EEECC
Confidence 899988877763 21 67888999999999 88876
No 76
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=54.38 E-value=1e+02 Score=26.64 Aligned_cols=107 Identities=8% Similarity=0.089 Sum_probs=70.2
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-------cCcEEEEcC-CC
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-------TKGAFVQPA-FY 675 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-------aadvfV~PS-~~ 675 (781)
.+++|+.+.+. ..+.+....++.+....|.... +..+....+.. ..|++++=. ..
T Consensus 8 ~~ILivdd~~~-----------~~~~l~~~L~~~g~~~~v~~~~------~~~~a~~~l~~~~~~~~~~~dlii~D~~l~ 70 (143)
T 2qvg_A 8 VDILYLEDDEV-----------DIQSVERVFHKISSLIKIEIAK------SGNQALDMLYGRNKENKIHPKLILLDINIP 70 (143)
T ss_dssp CSEEEECCCHH-----------HHHHHHHHHHHHCTTCCEEEES------SHHHHHHHHHTCTTCCCCCCSEEEEETTCT
T ss_pred CeEEEEeCCHH-----------HHHHHHHHHHHhCCCceEEEEC------CHHHHHHHHHhcccccCCCCCEEEEecCCC
Confidence 56777777643 3566777777776543566554 24566666652 367777643 33
Q ss_pred CCCcHHHHHHHH-----cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHH
Q 003985 676 EAFGLTVVEAMT-----CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMAD 727 (781)
Q Consensus 676 E~fGltvlEAMa-----~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~ 727 (781)
+.-|+.+++.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++.+++..
T Consensus 71 ~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 71 KMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp TSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 445777887775 46787764 3322 3345567889999999999999888654
No 77
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=53.73 E-value=24 Score=35.72 Aligned_cols=24 Identities=13% Similarity=0.367 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEcCCC
Q 003985 391 TFTEDVGSEITAELQGFPDFIIGNYSD 417 (781)
Q Consensus 391 ~f~~~~~~~i~~~l~~~pDIIh~~~~~ 417 (781)
.....+.+.+++. +||+|++++..
T Consensus 84 ~~~~~l~~~ir~~---~PdvV~t~~~~ 107 (242)
T 2ixd_A 84 EYIREIVKVIRTY---KPKLVFAPYYE 107 (242)
T ss_dssp HHHHHHHHHHHHH---CCSEEEEECSC
T ss_pred HHHHHHHHHHHHc---CCCEEEECCCC
Confidence 3344555555555 89999987643
No 78
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=53.73 E-value=1.2e+02 Score=31.64 Aligned_cols=148 Identities=11% Similarity=0.069 Sum_probs=88.7
Q ss_pred CEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCC-cEEEeccccC
Q 003985 573 PIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDG-QFRWIAAQTN 651 (781)
Q Consensus 573 ~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~-~V~flG~~~~ 651 (781)
+.++.+..=.+.|.+..|++++++.+. .+++-..|.|.. . .-....+.+..|+.- +|.|.|
T Consensus 112 ~~~lvv~~ds~~~sl~dL~~~ak~~p~---~~~~g~~g~Gs~----------~-hl~~~~l~~~~Gi~~~~Vpy~G---- 173 (312)
T 2f5x_A 112 PMTIIARGDFPPNNIKELAEYVKKNAD---KISLANAGIGAA----------S-HLCGTMLVEALGVNLLTIPYKG---- 173 (312)
T ss_dssp EEEEEECTTCSCCSHHHHHHHHHHHGG---GCEEEESSTTSH----------H-HHHHHHHHHHHTCCCEEEECSS----
T ss_pred cEEEEEeCCCCCCCHHHHHHHHHhCCC---ceEEeCCCCCcH----------H-HHHHHHHHHHHCCCeEEeccCC----
Confidence 344445444578999999998887654 245444443321 0 112233445667642 344443
Q ss_pred cCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCc-EEEc----------Ccccccc-----ccccCCeEEEECC
Q 003985 652 RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLP-TFAT----------CHGGPAE-----IIEHGASGFHIDP 715 (781)
Q Consensus 652 ~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlP-VIaT----------~~GG~~E-----iI~dg~~G~lv~p 715 (781)
..+.+..++....|+.+... -++.+.+..|.- +++. +++-..| +....-.|+.++.
T Consensus 174 --~~~a~~aL~~G~VD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~ 245 (312)
T 2f5x_A 174 --TAPAMNDLLGKQVDLMCDQT------TNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPK 245 (312)
T ss_dssp --HHHHHHHHHTTSSCEEEEEH------HHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEET
T ss_pred --hHHHHHHHHcCCccEEEech------HHHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcC
Confidence 14566777777788877652 245666677743 3332 1111111 1111236888888
Q ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003985 716 YHPDQAAELMADFFGKCKENPSHWKKISDGG 746 (781)
Q Consensus 716 ~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a 746 (781)
+.++++.++|.+.+.+...||+..+.+.+.+
T Consensus 246 g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g 276 (312)
T 2f5x_A 246 GTPKPVVDKLVKSLQAGLADPKFQERMKQLG 276 (312)
T ss_dssp TCCHHHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 8899999999999988889999888776554
No 79
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=51.08 E-value=1.2e+02 Score=26.00 Aligned_cols=108 Identities=14% Similarity=0.268 Sum_probs=69.5
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc--cCcEEEEcC-CCCCCcH
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS-~~E~fGl 680 (781)
.+++||.+.+. ..+.+....++.|.. .|.... +..+....+.. ..|++++=. ..+.-|+
T Consensus 6 ~~iLivdd~~~-----------~~~~l~~~L~~~g~~-~v~~~~------~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~ 67 (129)
T 3h1g_A 6 MKLLVVDDSST-----------MRRIIKNTLSRLGYE-DVLEAE------HGVEAWEKLDANADTKVLITDWNMPEMNGL 67 (129)
T ss_dssp CCEEEECSCHH-----------HHHHHHHHHHHTTCC-CEEEES------SHHHHHHHHHHCTTCCEEEECSCCSSSCHH
T ss_pred cEEEEEeCCHH-----------HHHHHHHHHHHcCCc-EEEEeC------CHHHHHHHHHhCCCCCEEEEeCCCCCCCHH
Confidence 46777776543 356677777777643 244332 23444544432 257777643 3455688
Q ss_pred HHHHHHHc-----CCcEEEc-Ccccc---ccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 681 TVVEAMTC-----GLPTFAT-CHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~-----GlPVIaT-~~GG~---~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.+++.+.. .+|+|.. ..+.. .+.+..|..+++..|.+++++.++|..++
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 68 DLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 125 (129)
T ss_dssp HHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHh
Confidence 88888753 5788774 43333 34556788999999999999999998766
No 80
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=50.61 E-value=6.5 Score=39.94 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=26.2
Q ss_pred CCceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccC
Q 003985 276 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 276 p~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~ 341 (781)
+|+|||+|... |+. |. .+++.|.++||+|. +++|..
T Consensus 3 ~m~~~ilVtGa-G~i-----------G~--------------~l~~~L~~~g~~V~----~~~r~~ 38 (286)
T 3ius_A 3 AMTGTLLSFGH-GYT-----------AR--------------VLSRALAPQGWRII----GTSRNP 38 (286)
T ss_dssp --CCEEEEETC-CHH-----------HH--------------HHHHHHGGGTCEEE----EEESCG
T ss_pred CCcCcEEEECC-cHH-----------HH--------------HHHHHHHHCCCEEE----EEEcCh
Confidence 57899999975 662 22 67778889999998 888763
No 81
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=50.50 E-value=1.2e+02 Score=26.10 Aligned_cols=109 Identities=7% Similarity=0.071 Sum_probs=70.7
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++|+.+.+. ....+....++.|. .|.... +..+..+.+.. ..|++++-. ..+.-|+
T Consensus 6 ~~~iLivdd~~~-----------~~~~l~~~l~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~ 66 (140)
T 3grc_A 6 RPRILICEDDPD-----------IARLLNLMLEKGGF--DSDMVH------SAAQALEQVARRPYAAMTVDLNLPDQDGV 66 (140)
T ss_dssp CSEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEEC------SHHHHHHHHHHSCCSEEEECSCCSSSCHH
T ss_pred CCCEEEEcCCHH-----------HHHHHHHHHHHCCC--eEEEEC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Confidence 357777776643 35566677777654 244433 23455555542 357777644 3455678
Q ss_pred HHHHHHHc-----CCcEEEc-Ccccc---c-cccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003985 681 TVVEAMTC-----GLPTFAT-CHGGP---A-EIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 681 tvlEAMa~-----GlPVIaT-~~GG~---~-EiI~dg~~G~lv~p~d~e~lA~~I~~~l~ 730 (781)
.+++.+.. .+|+|.- ..... . +.+..|..+++..|.+.+++..+|..+++
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 67 SLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp HHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 88887764 7888874 33322 2 45567889999999999999999988774
No 82
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=49.67 E-value=95 Score=31.67 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=26.2
Q ss_pred ceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEccCC
Q 003985 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIP 342 (781)
Q Consensus 278 ~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~~p 342 (781)
+|||++....|+.. ..+. .|.+.|++.| +|. |+++...
T Consensus 1 ~M~ILlTNDDGi~a--------------pGi~--------aL~~~l~~~g-~V~----VVAP~~~ 38 (251)
T 2phj_A 1 MPTFLLVNDDGYFS--------------PGIN--------ALREALKSLG-RVV----VVAPDRN 38 (251)
T ss_dssp -CEEEEECSSCTTC--------------HHHH--------HHHHHHTTTS-EEE----EEEESSC
T ss_pred CCEEEEECCCCCCC--------------HHHH--------HHHHHHHhcC-CEE----EEecCCC
Confidence 38999999888732 1244 5566678888 888 8877643
No 83
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=48.14 E-value=1.7e+02 Score=29.58 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=23.5
Q ss_pred HcCCCceEEEE--cC-C--------CchHHHHHHHHHcCCcEEEEec
Q 003985 403 ELQGFPDFIIG--NY-S--------DGNLVASLLAYKMGITQCTIAH 438 (781)
Q Consensus 403 ~l~~~pDIIh~--~~-~--------~~~lva~llar~~gvp~v~t~H 438 (781)
.+..+||+|++ |. . .+-..|+.-+..+|+|-+..-.
T Consensus 82 l~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 82 VMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp TSTTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred hccCCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 34568999994 21 1 1235566777788999987644
No 84
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=48.03 E-value=1.4e+02 Score=26.48 Aligned_cols=110 Identities=13% Similarity=0.190 Sum_probs=70.8
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++||.+.+. ....+.+..++.|. .|.... +..+....+.. ..|++++-. ..+.-|+
T Consensus 7 ~~~ILivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlii~D~~l~~~~g~ 67 (154)
T 3gt7_A 7 AGEILIVEDSPT-----------QAEHLKHILEETGY--QTEHVR------NGREAVRFLSLTRPDLIISDVLMPEMDGY 67 (154)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHTTTC--EEEEES------SHHHHHHHHTTCCCSEEEEESCCSSSCHH
T ss_pred CCcEEEEeCCHH-----------HHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Confidence 357788877643 35566666666653 343332 24556665542 246766643 3455678
Q ss_pred HHHHHHH-----cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHHHh
Q 003985 681 TVVEAMT-----CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFFGK 731 (781)
Q Consensus 681 tvlEAMa-----~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~~ 731 (781)
.+++.+. ..+|+|+. .... ..+.+..|..+++..|.+.+++..+|..++..
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 68 ALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp HHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 8887775 46788774 3332 33445678899999999999999999888743
No 85
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=46.18 E-value=91 Score=32.35 Aligned_cols=148 Identities=16% Similarity=0.088 Sum_probs=85.8
Q ss_pred CEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCC-cEEEeccccC
Q 003985 573 PIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDG-QFRWIAAQTN 651 (781)
Q Consensus 573 ~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~-~V~flG~~~~ 651 (781)
+.++.+..=.+.|.+..|+++.++.+. .+++-..|.|.. .+ -....+.+..|+.- +|.|.|
T Consensus 103 ~~~lvv~~~s~~~sl~dL~~~ak~~p~---~~~~g~~g~Gs~----------~h-l~~~~l~~~~G~~~~~Vpy~g---- 164 (301)
T 2qpq_A 103 PSVFVVPAGSKYKTLGELMAAAKQTNT---QVTYGSCGNGTP----------QH-LAGELLNVSAKTHMVHVPYKG---- 164 (301)
T ss_dssp EEEEEEETTCSCCSHHHHHHHTCSSSC---CCEEEESSTTSH----------HH-HHHHHHHHHHTCCCEEEECSS----
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCC---ceEEecCCCCcH----------HH-HHHHHHHHHhCCCeEEeccCC----
Confidence 344444444578999999887654332 244444433322 11 12233445567642 344444
Q ss_pred cCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCc-EEEc----------Ccccccc-----ccccCCeEEEECC
Q 003985 652 RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLP-TFAT----------CHGGPAE-----IIEHGASGFHIDP 715 (781)
Q Consensus 652 ~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlP-VIaT----------~~GG~~E-----iI~dg~~G~lv~p 715 (781)
..+.+..++....|+.+... -++.+....|.- +++. +++-..| +....-.|+.++.
T Consensus 165 --~~~a~~al~~G~vD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~ 236 (301)
T 2qpq_A 165 --CGPALNDVLGSQIGLAVVTA------SSAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPG 236 (301)
T ss_dssp --HHHHHHHHHTTSSSCEEEEH------HHHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEET
T ss_pred --hHHHHHHHHCCCccEEEEcH------HHHHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecC
Confidence 14566677777788777652 245666677742 2321 1111111 1112236888888
Q ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003985 716 YHPDQAAELMADFFGKCKENPSHWKKISDGG 746 (781)
Q Consensus 716 ~d~e~lA~~I~~~l~~l~~dp~~~~~~s~~a 746 (781)
+.++++.++|.+.+.+...||+..+.+.+.+
T Consensus 237 g~p~~vv~~l~~al~~~~~~~~~~~~~~~~g 267 (301)
T 2qpq_A 237 ATPMAVRQKLYDGIAKVMQRDDVQKKLADLG 267 (301)
T ss_dssp TCCHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 8899999999999888889999888876654
No 86
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=45.50 E-value=1.7e+02 Score=26.31 Aligned_cols=110 Identities=11% Similarity=0.222 Sum_probs=69.1
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH-ccCcEEEEcC-CCCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA-DTKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fGl 680 (781)
+.+++||=+.+. ..+-+....++.|.. .|.... +-.+..+.+. ..-|+.++=- .-+.-|+
T Consensus 12 ~~rILiVDD~~~-----------~r~~l~~~L~~~G~~-~v~~a~------~g~~al~~~~~~~~DlillD~~MP~mdG~ 73 (134)
T 3to5_A 12 NMKILIVDDFST-----------MRRIVKNLLRDLGFN-NTQEAD------DGLTALPMLKKGDFDFVVTDWNMPGMQGI 73 (134)
T ss_dssp TCCEEEECSCHH-----------HHHHHHHHHHHTTCC-CEEEES------SHHHHHHHHHHHCCSEEEEESCCSSSCHH
T ss_pred CCEEEEEeCCHH-----------HHHHHHHHHHHcCCc-EEEEEC------CHHHHHHHHHhCCCCEEEEcCCCCCCCHH
Confidence 467777766543 355666777777653 243322 1223333333 2356666632 2355688
Q ss_pred HHHHHHH-----cCCcEEE-cCcccccc---ccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003985 681 TVVEAMT-----CGLPTFA-TCHGGPAE---IIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 681 tvlEAMa-----~GlPVIa-T~~GG~~E---iI~dg~~G~lv~p~d~e~lA~~I~~~l~ 730 (781)
.+++.+- ..+|||. |..+...+ ..+.|.++|+..|-+++++.++|.++++
T Consensus 74 el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 74 DLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp HHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 8888774 4688886 55444433 4457899999999999999999987763
No 87
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=45.14 E-value=1.6e+02 Score=25.88 Aligned_cols=110 Identities=9% Similarity=0.083 Sum_probs=68.2
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc--------cCcEEEEcCC
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--------TKGAFVQPAF 674 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~--------aadvfV~PS~ 674 (781)
..+++||.+.+. ....+....++.+....|.... +..+...++.. ..|++++=..
T Consensus 8 ~~~ILivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~dlillD~~ 70 (149)
T 1i3c_A 8 PKVILLVEDSKA-----------DSRLVQEVLKTSTIDHELIILR------DGLAAMAFLQQQGEYENSPRPNLILLDLN 70 (149)
T ss_dssp CEEEEEECCCHH-----------HHHHHHHHHHSCCSCEEEEEEC------SHHHHHHHHTTCGGGTTCCCCSEEEECSC
T ss_pred CCeEEEEECCHH-----------HHHHHHHHHHhcCCCccEEEeC------CHHHHHHHHHhccccccCCCCCEEEEeCC
Confidence 467788877643 3455666666554322333332 24566666652 3577777433
Q ss_pred -CCCCcHHHHHHHHc-----CCcEEE-cCccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 675 -YEAFGLTVVEAMTC-----GLPTFA-TCHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 675 -~E~fGltvlEAMa~-----GlPVIa-T~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
...-|+.+++.+.. .+|+|. |.... ..+.+..|..|++..|.+.+++.++|..++
T Consensus 71 lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 135 (149)
T 1i3c_A 71 LPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIE 135 (149)
T ss_dssp CSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 24457777777753 568766 33333 234456788999999999999999886654
No 88
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=44.09 E-value=1.2e+02 Score=26.66 Aligned_cols=110 Identities=8% Similarity=0.042 Sum_probs=64.7
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcHH
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLT 681 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGlt 681 (781)
.+++||.+.+. ..+.+....++.+-...|.... +..+..+.+.. ..|++++-. ..+.-|+.
T Consensus 21 ~~iLivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~al~~l~~~~~dlii~D~~l~~~~g~~ 83 (150)
T 4e7p_A 21 MKVLVAEDQSM-----------LRDAMCQLLTLQPDVESVLQAK------NGQEAIQLLEKESVDIAILDVEMPVKTGLE 83 (150)
T ss_dssp EEEEEECSCHH-----------HHHHHHHHHHTSTTEEEEEEES------SHHHHHHHHTTSCCSEEEECSSCSSSCHHH
T ss_pred cEEEEEcCCHH-----------HHHHHHHHHHhCCCcEEEEEEC------CHHHHHHHhhccCCCEEEEeCCCCCCcHHH
Confidence 56777776533 2444555555443111222222 23455555542 246666543 34555777
Q ss_pred HHHHHHc---CCcEEEc-Ccc---ccccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003985 682 VVEAMTC---GLPTFAT-CHG---GPAEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 682 vlEAMa~---GlPVIaT-~~G---G~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~ 730 (781)
+++.+.. .+|+|.. ... ...+.+..|..+++..|.+.+++.++|..++.
T Consensus 84 ~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 84 VLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLE 139 (150)
T ss_dssp HHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHc
Confidence 7766643 6777764 332 23445667899999999999999999988763
No 89
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=43.80 E-value=1.5e+02 Score=25.54 Aligned_cols=110 Identities=4% Similarity=-0.035 Sum_probs=68.5
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH------ccCcEEEEcC-CC
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA------DTKGAFVQPA-FY 675 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la------~aadvfV~PS-~~ 675 (781)
..+++||.+.+. ....+..+.++.+....|.... +..+....+. ...|++++-. ..
T Consensus 9 ~~~iLivdd~~~-----------~~~~l~~~l~~~~~~~~v~~~~------~~~~a~~~l~~~~~~~~~~dlvi~D~~l~ 71 (146)
T 3ilh_A 9 IDSVLLIDDDDI-----------VNFLNTTIIRMTHRVEEIQSVT------SGNAAINKLNELYAAGRWPSIICIDINMP 71 (146)
T ss_dssp EEEEEEECSCHH-----------HHHHHHHHHHTTCCEEEEEEES------SHHHHHHHHHHHHTSSCCCSEEEEESSCS
T ss_pred cceEEEEeCCHH-----------HHHHHHHHHHhcCCCeeeeecC------CHHHHHHHHHHhhccCCCCCEEEEcCCCC
Confidence 467788877643 3455666666554321343332 2455666665 2367777744 34
Q ss_pred CCCcHHHHHHHHc-------CCcEEEc-Cccc---cccccccC-CeEEEECCCCHHHHHHHHHHHH
Q 003985 676 EAFGLTVVEAMTC-------GLPTFAT-CHGG---PAEIIEHG-ASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 676 E~fGltvlEAMa~-------GlPVIaT-~~GG---~~EiI~dg-~~G~lv~p~d~e~lA~~I~~~l 729 (781)
+.-|+.+++.+.. .+|+|.. .... ..+....| ..+++..|-+.+++.++|.+.+
T Consensus 72 ~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~ 137 (146)
T 3ilh_A 72 GINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVL 137 (146)
T ss_dssp SSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHH
Confidence 5567888777654 6777664 3332 23344566 8899999999999999998766
No 90
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=41.94 E-value=1.7e+02 Score=25.20 Aligned_cols=108 Identities=8% Similarity=0.111 Sum_probs=69.9
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++|+.+.+. ..+.+....++.|. .|.... +..+....+.. ..|++++-. ..+.-|+
T Consensus 7 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~ 67 (142)
T 3cg4_A 7 KGDVMIVDDDAH-----------VRIAVKTILSDAGF--HIISAD------SGGQCIDLLKKGFSGVVLLDIMMPGMDGW 67 (142)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTCCCEEEEEESCCSSSCHH
T ss_pred CCeEEEEcCCHH-----------HHHHHHHHHHHCCe--EEEEeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 467888877643 35666777777654 344332 24566666653 246666643 3345677
Q ss_pred HHHHHHHc-----CCcEEEc-Ccc---ccccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 681 TVVEAMTC-----GLPTFAT-CHG---GPAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~-----GlPVIaT-~~G---G~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.+++.+.. .+|||+- ... ...+.+..|..+++..|.+.+++.+.|..++
T Consensus 68 ~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 68 DTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp HHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 88887754 5777763 332 3344556788899999999999999998776
No 91
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=41.11 E-value=83 Score=27.56 Aligned_cols=111 Identities=11% Similarity=0.176 Sum_probs=63.9
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH--ccCcEEEEcCC-CCCCc
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA--DTKGAFVQPAF-YEAFG 679 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la--~aadvfV~PS~-~E~fG 679 (781)
..+++||.+.+. ....+..+.++.|- -.|.... + ..+.+..+.. ...|++++=.. .+.-|
T Consensus 20 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~-~~v~~~~--~---~~~~~~~~~~~~~~~dlvi~D~~l~~~~g 82 (146)
T 4dad_A 20 MINILVASEDAS-----------RLAHLARLVGDAGR-YRVTRTV--G---RAAQIVQRTDGLDAFDILMIDGAALDTAE 82 (146)
T ss_dssp GCEEEEECSCHH-----------HHHHHHHHHHHHCS-CEEEEEC--C---CHHHHTTCHHHHTTCSEEEEECTTCCHHH
T ss_pred CCeEEEEeCCHH-----------HHHHHHHHHhhCCC-eEEEEeC--C---HHHHHHHHHhcCCCCCEEEEeCCCCCccH
Confidence 456777766543 34556666666541 1233221 1 1223333332 24677766432 33345
Q ss_pred HHHHHHHHc---CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003985 680 LTVVEAMTC---GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 680 ltvlEAMa~---GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~ 730 (781)
+.+++.+.. .+|||.- .... ..+.+..|..+++..|.+.+++..+|..++.
T Consensus 83 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 83 LAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 666665543 6788764 3332 3345567889999999999999999988764
No 92
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=41.09 E-value=18 Score=35.04 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=23.8
Q ss_pred CceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHH-HHHCCCcee
Q 003985 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLR-IKRQGLDIS 331 (781)
Q Consensus 277 ~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~-L~~~GheV~ 331 (781)
|||||++|+- .|..+|.... +.+.+++. +.+.|++|+
T Consensus 1 mMmkilii~g-----------S~r~~g~t~~-------la~~i~~~~l~~~g~~v~ 38 (197)
T 2vzf_A 1 MTYSIVAISG-----------SPSRNSTTAK-------LAEYALAHVLARSDSQGR 38 (197)
T ss_dssp CCEEEEEEEC-----------CSSTTCHHHH-------HHHHHHHHHHHHSSEEEE
T ss_pred CCceEEEEEC-----------CCCCCChHHH-------HHHHHHHHHHHHCCCeEE
Confidence 6789999973 2333453333 23356677 788899888
No 93
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=40.70 E-value=1.6e+02 Score=25.91 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=67.1
Q ss_pred CCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH-ccCcEEEEcC-CCCCCc
Q 003985 602 ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA-DTKGAFVQPA-FYEAFG 679 (781)
Q Consensus 602 ~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fG 679 (781)
...+++||.+.+. ..+.+.....+.+-...|.... +..+..+.+. ...|++++-. ..+.-|
T Consensus 14 ~~~~iLivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g 76 (152)
T 3eul_A 14 EKVRVVVGDDHPL-----------FREGVVRALSLSGSVNVVGEAD------DGAAALELIKAHLPDVALLDYRMPGMDG 76 (152)
T ss_dssp CCEEEEEECSSHH-----------HHHHHHHHHHHHSSEEEEEEES------SHHHHHHHHHHHCCSEEEEETTCSSSCH
T ss_pred ceEEEEEEcCCHH-----------HHHHHHHHHhhCCCeEEEEEeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 3467777777643 3455666666654211121221 2344444443 2356666643 345557
Q ss_pred HHHHHHHHc---CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003985 680 LTVVEAMTC---GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 680 ltvlEAMa~---GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~ 730 (781)
+.+++.+.. .+|||.. .... ..+.+..|..|++..|.+.+++.++|..++.
T Consensus 77 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 77 AQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp HHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHc
Confidence 777766643 5677763 3332 2345567899999999999999999988773
No 94
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=38.60 E-value=1.9e+02 Score=24.90 Aligned_cols=107 Identities=9% Similarity=0.156 Sum_probs=69.6
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH---ccCcEEEEcC-CCCCCc
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA---DTKGAFVQPA-FYEAFG 679 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la---~aadvfV~PS-~~E~fG 679 (781)
.+++|+.+.+. ..+.+....++.|. .|.... +..+....+. ...|++++-. ..+.-|
T Consensus 4 ~~ilivdd~~~-----------~~~~l~~~l~~~g~--~v~~~~------~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g 64 (143)
T 3jte_A 4 AKILVIDDEST-----------ILQNIKFLLEIDGN--EVLTAS------SSTEGLRIFTENCNSIDVVITDMKMPKLSG 64 (143)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHTTTTCCEEEEESCCSSSCH
T ss_pred CEEEEEcCCHH-----------HHHHHHHHHHhCCc--eEEEeC------CHHHHHHHHHhCCCCCCEEEEeCCCCCCcH
Confidence 56778877643 35667777777653 344332 2455666665 2367776643 345567
Q ss_pred HHHHHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 680 LTVVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 680 ltvlEAMa---~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
+.+++.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++..+|..++
T Consensus 65 ~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 65 MDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp HHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHH
Confidence 77776654 36787764 3333 334567789999999999999999998776
No 95
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=37.67 E-value=62 Score=31.41 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=19.7
Q ss_pred CCceEEEEcCCCc--hHHHHHHHHH-cCCcEEE
Q 003985 406 GFPDFIIGNYSDG--NLVASLLAYK-MGITQCT 435 (781)
Q Consensus 406 ~~pDIIh~~~~~~--~lva~llar~-~gvp~v~ 435 (781)
.+.|+|++...+. +..+...++. .+.+.++
T Consensus 64 ~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii 96 (218)
T 3l4b_C 64 SKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVV 96 (218)
T ss_dssp CTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEE
T ss_pred ccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEE
Confidence 3789888766553 6677777776 5655544
No 96
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=37.62 E-value=36 Score=35.35 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=25.4
Q ss_pred ceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCcee
Q 003985 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 331 (781)
Q Consensus 278 ~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~ 331 (781)
.|||+||..| |+.++ ...+|.+...+.|.++||+|+
T Consensus 22 ~MKiLII~aH-----------P~~~S-------~n~aL~~~~~~~l~~~G~eV~ 57 (280)
T 4gi5_A 22 SMKVLLIYAH-----------PEPRS-------LNGALKNFAIRHLQQAGHEVQ 57 (280)
T ss_dssp CCEEEEEECC-----------SCTTS-------HHHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEeC-----------CCCcc-------HHHHHHHHHHHHHHHCCCeEE
Confidence 4799999755 33333 233455577888999999998
No 97
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=37.41 E-value=1.9e+02 Score=24.92 Aligned_cols=108 Identities=10% Similarity=0.152 Sum_probs=66.2
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCC-CCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAF-YEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGl 680 (781)
..+++|+.+.+. ..+.+....++.|. .|.... +..+....+.. ..|++++-.. ...-|+
T Consensus 4 ~~~Ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvllD~~l~~~~g~ 64 (136)
T 2qzj_A 4 QTKILIIDGDKD-----------NCQKLKGFLEEKGI--SIDLAY------NCEEAIGKIFSNKYDLIFLEIILSDGDGW 64 (136)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHTTTC--EEEEES------SHHHHHHHHHHCCCSEEEEESEETTEEHH
T ss_pred CCeEEEEcCCHH-----------HHHHHHHHHHHCCC--EEEEEC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 357778877643 34556666665443 343332 23455555542 3577766332 233567
Q ss_pred HHHHHHHc--CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 681 TVVEAMTC--GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~--GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.+++.+.. .+|+|.- .... ..+.+..|..|++..|.+.+++.++|..++
T Consensus 65 ~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 119 (136)
T 2qzj_A 65 TLCKKIRNVTTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAIL 119 (136)
T ss_dssp HHHHHHHTTCCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 77777643 5787764 3332 334556788999999999999999997766
No 98
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=37.28 E-value=1.2e+02 Score=27.18 Aligned_cols=107 Identities=11% Similarity=0.179 Sum_probs=64.4
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEE-EeccccCcCChHHHHHHHHc---cCcEEEEcC-CCCCC
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR-WIAAQTNRARNGELYRYIAD---TKGAFVQPA-FYEAF 678 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~-flG~~~~~v~~~el~~~la~---aadvfV~PS-~~E~f 678 (781)
.+++||.+.+. ..+.+....++.|. .+. .. .+..+....+.. ..|++++-. ..+.-
T Consensus 37 ~~Ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~~al~~l~~~~~~~dliilD~~l~~~~ 97 (157)
T 3hzh_A 37 FNVLIVDDSVF-----------TVKQLTQIFTSEGF--NIIDTA------ADGEEAVIKYKNHYPNIDIVTLXITMPKMD 97 (157)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEEE------SSHHHHHHHHHHHGGGCCEEEECSSCSSSC
T ss_pred eEEEEEeCCHH-----------HHHHHHHHHHhCCC--eEEEEE------CCHHHHHHHHHhcCCCCCEEEEeccCCCcc
Confidence 46777766532 34556666666543 232 22 124455555543 136666643 33445
Q ss_pred cHHHHHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 679 GLTVVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 679 GltvlEAMa---~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
|+.+++.+. ..+|||.. .... ..+.+..|..+++..|.+.+++.++|..++
T Consensus 98 g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 98 GITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 676666553 46788774 3322 334556788999999999999999997654
No 99
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=37.18 E-value=2e+02 Score=24.71 Aligned_cols=75 Identities=8% Similarity=0.115 Sum_probs=45.9
Q ss_pred hHHHHHHHHc-cCcEEEEcC-CCCCCcHHHHHHHH-----cCCcEEEc-Ccc---ccccccccCCeEEEECCCCHHHHHH
Q 003985 655 NGELYRYIAD-TKGAFVQPA-FYEAFGLTVVEAMT-----CGLPTFAT-CHG---GPAEIIEHGASGFHIDPYHPDQAAE 723 (781)
Q Consensus 655 ~~el~~~la~-aadvfV~PS-~~E~fGltvlEAMa-----~GlPVIaT-~~G---G~~EiI~dg~~G~lv~p~d~e~lA~ 723 (781)
..+..+.+.. ..|++++-. ..+.-|+.+++.+. .++|+|.. ... ...+.+..|..+++..|.+.+++.+
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~ 114 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLS 114 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHH
Confidence 3455554432 356766643 33445666666665 56788764 322 3344566788999999999999999
Q ss_pred HHHHHH
Q 003985 724 LMADFF 729 (781)
Q Consensus 724 ~I~~~l 729 (781)
+|..++
T Consensus 115 ~i~~~~ 120 (140)
T 3n53_A 115 RIEIHL 120 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998776
No 100
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=36.50 E-value=1.6e+02 Score=27.24 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=20.4
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHcCCcEEEEe
Q 003985 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIA 437 (781)
Q Consensus 405 ~~~pDIIh~~~~~~~lva~llar~~gvp~v~t~ 437 (781)
..++-+|+|+ +.|+.+|..++.+........+
T Consensus 60 ~~~~i~l~G~-SmGG~~a~~~a~~~~~~~~~~~ 91 (202)
T 4fle_A 60 AGQSIGIVGS-SLGGYFATWLSQRFSIPAVVVN 91 (202)
T ss_dssp TTSCEEEEEE-THHHHHHHHHHHHTTCCEEEES
T ss_pred CCCcEEEEEE-ChhhHHHHHHHHHhcccchhee
Confidence 3345455665 5667778888887776655543
No 101
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=35.87 E-value=1.1e+02 Score=24.91 Aligned_cols=105 Identities=8% Similarity=0.092 Sum_probs=64.4
Q ss_pred EEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcHHH
Q 003985 605 NLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLTV 682 (781)
Q Consensus 605 ~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGltv 682 (781)
+++|+.+.+. ..+.+....++.|. +|.... +..+....+.. ..|+++.-. ..+.-|+.+
T Consensus 3 ~iliv~~~~~-----------~~~~l~~~l~~~g~--~v~~~~------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~ 63 (119)
T 2j48_A 3 HILLLEEEDE-----------AATVVCEMLTAAGF--KVIWLV------DGSTALDQLDLLQPIVILMAWPPPDQSCLLL 63 (119)
T ss_dssp EEEEECCCHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHH
T ss_pred EEEEEeCCHH-----------HHHHHHHHHHhCCc--EEEEec------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 5667766543 34566666666654 344432 23444444442 356666643 334457778
Q ss_pred HHHHH-----cCCcEEEc-CccccccccccCCeEEEECCCCHHHHHHHHHHH
Q 003985 683 VEAMT-----CGLPTFAT-CHGGPAEIIEHGASGFHIDPYHPDQAAELMADF 728 (781)
Q Consensus 683 lEAMa-----~GlPVIaT-~~GG~~EiI~dg~~G~lv~p~d~e~lA~~I~~~ 728 (781)
++.+. ..+|+|+. ......+....|..+++..|.+.+++.+.|..+
T Consensus 64 ~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 64 LQHLREHQADPHPPLVLFLGEPPVDPLLTAQASAILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp HHHHHHTCCCSSCCCEEEESSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTT
T ss_pred HHHHHhccccCCCCEEEEeCCCCchhhhhcCHHHhccCCCCHHHHHHHHHHH
Confidence 87775 46787763 333222566678889999999999999888654
No 102
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=35.67 E-value=1.7e+02 Score=25.04 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=65.4
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCC-C-----C
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAF-Y-----E 676 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~-----E 676 (781)
.+++|+.+.+. ....+....++.|. .|.... +..+....+.. ..|++++-.. . +
T Consensus 4 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~ 64 (140)
T 2qr3_A 4 GTIIIVDDNKG-----------VLTAVQLLLKNHFS--KVITLS------SPVSLSTVLREENPEVVLLDMNFTSGINNG 64 (140)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHTTTSS--EEEEEC------CHHHHHHHHHHSCEEEEEEETTTTC-----
T ss_pred ceEEEEeCCHH-----------HHHHHHHHHHhCCc--EEEEeC------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCC
Confidence 56777776643 34555566655543 344332 24455555553 2466666432 2 4
Q ss_pred CCcHHHHHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 677 AFGLTVVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 677 ~fGltvlEAMa---~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.-|+.+++.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++.++|..++
T Consensus 65 ~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 65 NEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHH
Confidence 45677766654 47888874 3222 234456788999999999999999998776
No 103
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=35.55 E-value=2.1e+02 Score=24.42 Aligned_cols=108 Identities=11% Similarity=0.116 Sum_probs=68.0
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEE-eccccCcCChHHHHHHHHc-cCcEEEEcCCC--CCC
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRW-IAAQTNRARNGELYRYIAD-TKGAFVQPAFY--EAF 678 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~f-lG~~~~~v~~~el~~~la~-aadvfV~PS~~--E~f 678 (781)
..+++|+.+.+. ..+.+....++.|. .+.. .. +..+....+.. ..|++++-... +.-
T Consensus 9 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~~------~~~~a~~~~~~~~~dlii~d~~~~~~~~ 69 (140)
T 3cg0_A 9 LPGVLIVEDGRL-----------AAATLRIQLESLGY--DVLGVFD------NGEEAVRCAPDLRPDIALVDIMLCGALD 69 (140)
T ss_dssp CCEEEEECCBHH-----------HHHHHHHHHHHHTC--EEEEEES------SHHHHHHHHHHHCCSEEEEESSCCSSSC
T ss_pred CceEEEEECCHH-----------HHHHHHHHHHHCCC--eeEEEEC------CHHHHHHHHHhCCCCEEEEecCCCCCCC
Confidence 467888887643 35566666666654 2442 22 23455555442 35777765433 345
Q ss_pred cHHHHHHHH--cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 679 GLTVVEAMT--CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 679 GltvlEAMa--~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
|+.+++.+. ..+|+|.- .... ..+.+..|..+++..|.+.+++...|..++
T Consensus 70 g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 70 GVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAI 126 (140)
T ss_dssp HHHHHHHHHHHSCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 666666554 57888874 3333 234556788999999999999999997766
No 104
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=35.45 E-value=21 Score=36.71 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=26.0
Q ss_pred CceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEcc
Q 003985 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 277 ~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~ 340 (781)
|.|||+|....|+. |. .|++.|.++|++|. +++|.
T Consensus 1 M~~~vlVtGatG~i-----------G~--------------~l~~~L~~~g~~V~----~~~r~ 35 (311)
T 3m2p_A 1 MSLKIAVTGGTGFL-----------GQ--------------YVVESIKNDGNTPI----ILTRS 35 (311)
T ss_dssp -CCEEEEETTTSHH-----------HH--------------HHHHHHHHTTCEEE----EEESC
T ss_pred CCCEEEEECCCcHH-----------HH--------------HHHHHHHhCCCEEE----EEeCC
Confidence 67899888766652 21 56778899999998 88887
No 105
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=34.92 E-value=3.7e+02 Score=27.16 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhhccCCCe-EEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHcc
Q 003985 587 MTGLVECYGKNSQLRELV-NLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADT 665 (781)
Q Consensus 587 l~~LieA~~~l~~~~~~~-~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~a 665 (781)
+..-++.+.++. |+. ++.++++... .......+.+++.++++|+. +......+ .-...+...-+...
T Consensus 126 ~~~~l~l~~~l~---P~~k~vgvi~~~~~------~~s~~~~~~~~~~~~~~g~~--~v~~~~~~-~~~~~~~~~~l~~~ 193 (302)
T 3lkv_A 126 VEQHVELIKEIL---PNVKSIGVVYNPGE------ANAVSLMELLKLSAAKHGIK--LVEATALK-SADVQSATQAIAEK 193 (302)
T ss_dssp HHHHHHHHHHHS---TTCCEEEEEECTTC------HHHHHHHHHHHHHHHHTTCE--EEEEECSS-GGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC---CCCCEEEEEeCCCc------ccHHHHHHHHHHHHHHcCCE--EEEEecCC-hHHHHHHHHhccCC
Confidence 455566665543 333 5666665433 22334567788888888763 44443222 12233344444445
Q ss_pred CcEEEEcCCC---CCCcHHHHHHHHcCCcEEEcCccccccccccCCe-EEEECCCC
Q 003985 666 KGAFVQPAFY---EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGAS-GFHIDPYH 717 (781)
Q Consensus 666 advfV~PS~~---E~fGltvlEAMa~GlPVIaT~~GG~~EiI~dg~~-G~lv~p~d 717 (781)
.|++..|... .+......-+..+++||++... ..+..|.. |+.+++++
T Consensus 194 ~d~i~~~~d~~~~~~~~~i~~~~~~~~iPv~~~~~----~~v~~G~l~~~~~~~~~ 245 (302)
T 3lkv_A 194 SDVIYALIDNTVASAIEGMIVAANQAKTPVFGAAT----SYVERGAIASLGFDYYQ 245 (302)
T ss_dssp CSEEEECSCHHHHHTHHHHHHHHHHTTCCEEESSH----HHHHTTCSEEEECCHHH
T ss_pred eeEEEEeCCcchhhHHHHHHHHHhhcCCceeeccc----ccccCCceEEEecCHHH
Confidence 7888777531 2222334456789999998753 23444543 45554433
No 106
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=33.97 E-value=2.2e+02 Score=24.27 Aligned_cols=110 Identities=5% Similarity=0.092 Sum_probs=69.2
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHH-cCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCc
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKT-YKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFG 679 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~e-l~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fG 679 (781)
..+++|+.+.+. ....+....++ .|.. .|.... +..+....+.. ..|++++-. ..+.-|
T Consensus 8 ~~~iLivdd~~~-----------~~~~l~~~L~~~~~~~-~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g 69 (143)
T 3cnb_A 8 DFSILIIEDDKE-----------FADMLTQFLENLFPYA-KIKIAY------NPFDAGDLLHTVKPDVVMLDLMMVGMDG 69 (143)
T ss_dssp -CEEEEECSCHH-----------HHHHHHHHHHHHCTTC-EEEEEC------SHHHHHHHHHHTCCSEEEEETTCTTSCH
T ss_pred CceEEEEECCHH-----------HHHHHHHHHHhccCcc-EEEEEC------CHHHHHHHHHhcCCCEEEEecccCCCcH
Confidence 467788877643 35566666666 5542 144433 23455555442 357776644 334567
Q ss_pred HHHHHHHHc-----CCcEEEc-Ccccc---ccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003985 680 LTVVEAMTC-----GLPTFAT-CHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 680 ltvlEAMa~-----GlPVIaT-~~GG~---~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~ 730 (781)
+.+++.+.. .+|+|+. ..... .+.+..|..+++..|.+.+++.++|..++.
T Consensus 70 ~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 70 FSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVE 129 (143)
T ss_dssp HHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 778877754 5787763 33332 345567889999999999999999987763
No 107
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=33.35 E-value=2.3e+02 Score=24.16 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=69.8
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHcc--CcEEEEcC-CCCCCc
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADT--KGAFVQPA-FYEAFG 679 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~a--advfV~PS-~~E~fG 679 (781)
..+++|+.+.+. ....+....++.|. .|.... +..+....+... .|++++-. ..+.-|
T Consensus 7 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g 67 (136)
T 3hdv_A 7 RPLVLVVDDNAV-----------NREALILYLKSRGI--DAVGAD------GAEEARLYLHYQKRIGLMITDLRMQPESG 67 (136)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHHTTC--CEEEES------SHHHHHHHHHHCTTEEEEEECSCCSSSCH
T ss_pred CCeEEEECCCHH-----------HHHHHHHHHHHcCc--eEEEeC------CHHHHHHHHHhCCCCcEEEEeccCCCCCH
Confidence 357788887643 35667777777654 344432 234555555432 46666643 345568
Q ss_pred HHHHHHHHc----CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 680 LTVVEAMTC----GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 680 ltvlEAMa~----GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
+.+++.+.. .+|+|.. .... ..+.+..|..+++..|.+.+++.++|.+++
T Consensus 68 ~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (136)
T 3hdv_A 68 LDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKEL 125 (136)
T ss_dssp HHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHh
Confidence 888887754 4777774 3332 334556788999999999999999998776
No 108
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=33.33 E-value=2.5e+02 Score=24.60 Aligned_cols=106 Identities=8% Similarity=0.050 Sum_probs=65.3
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHcc-C-cEEEEcC-CCCCCcH
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADT-K-GAFVQPA-FYEAFGL 680 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~a-a-dvfV~PS-~~E~fGl 680 (781)
.+++||.+.+. ..+.+....+. + -.|.... +..+....+... . |++++-. ..+.-|+
T Consensus 5 ~~ILivdd~~~-----------~~~~l~~~L~~-~--~~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~ 64 (151)
T 3kcn_A 5 ERILLVDDDYS-----------LLNTLKRNLSF-D--FEVTTCE------SGPEALACIKKSDPFSVIMVDMRMPGMEGT 64 (151)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHTT-T--SEEEEES------SHHHHHHHHHHSCCCSEEEEESCCSSSCHH
T ss_pred CeEEEEeCCHH-----------HHHHHHHHhcc-C--ceEEEeC------CHHHHHHHHHcCCCCCEEEEeCCCCCCcHH
Confidence 57778877643 23344444432 2 2344332 345666666643 2 7777643 3455677
Q ss_pred HHHHHHH---cCCcEEEc-Cccc---cccccccC-CeEEEECCCCHHHHHHHHHHHH
Q 003985 681 TVVEAMT---CGLPTFAT-CHGG---PAEIIEHG-ASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa---~GlPVIaT-~~GG---~~EiI~dg-~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.+++.+. ..+|+|.. .... ..+.+..| ..+++..|.+.+++.++|..++
T Consensus 65 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l 121 (151)
T 3kcn_A 65 EVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGI 121 (151)
T ss_dssp HHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHH
Confidence 7776654 46777763 3333 33445567 7899999999999999998877
No 109
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=33.08 E-value=40 Score=33.02 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=23.3
Q ss_pred CceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHC--CCcee
Q 003985 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQ--GLDIS 331 (781)
Q Consensus 277 ~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~--GheV~ 331 (781)
|||||++|+-|--| ..+|.. ++|.+.+++.+.++ |++|+
T Consensus 3 mM~kiLiI~gSpr~---------~~~S~s-------~~l~~~~~~~~~~~~~g~ev~ 43 (211)
T 3p0r_A 3 AMTKVLFVKANNRP---------AEQAVS-------VKLYEAFLASYKEAHPNDTVV 43 (211)
T ss_dssp -CCEEEEEECCCSC---------TTTCHH-------HHHHHHHHHHHHHHCTTSEEE
T ss_pred ccCEEEEEEeCCCC---------CCCCHH-------HHHHHHHHHHHHHhCCCCeEE
Confidence 68999999743221 134422 23334666778777 89888
No 110
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=32.27 E-value=2.2e+02 Score=29.05 Aligned_cols=14 Identities=0% Similarity=-0.109 Sum_probs=10.7
Q ss_pred HHHHHHHHCCCcee
Q 003985 318 EMLLRIKRQGLDIS 331 (781)
Q Consensus 318 eLa~~L~~~GheV~ 331 (781)
.|+++|.++|+++.
T Consensus 39 ~l~~~L~~~g~~~~ 52 (346)
T 4egb_A 39 NFVHYMLQSYETYK 52 (346)
T ss_dssp HHHHHHHHHCTTEE
T ss_pred HHHHHHHhhCCCcE
Confidence 56678899997666
No 111
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=31.80 E-value=36 Score=32.77 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHC-CCceeeceeEEEcc
Q 003985 309 LDQVRALENEMLLRIKRQ-GLDISPKILIVTRL 340 (781)
Q Consensus 309 ld~araL~~eLa~~L~~~-GheV~~~v~VlT~~ 340 (781)
.+....+...|.+.|.+. |++| ++||.
T Consensus 27 k~~~l~ia~~l~~~L~~~~G~~V-----~ltR~ 54 (179)
T 1jwq_A 27 KTFNLAMALKVESILKQNPKLEV-----VLTRS 54 (179)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEE-----EESCS
T ss_pred HHHHHHHHHHHHHHHHhCCCCEE-----EEeCC
Confidence 355566666888999999 9988 57776
No 112
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=31.40 E-value=2.3e+02 Score=23.77 Aligned_cols=106 Identities=8% Similarity=0.092 Sum_probs=64.9
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc--cCcEEEEcCC-CC-CC
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPAF-YE-AF 678 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~-~E-~f 678 (781)
..+++|+.+.+. ..+.+....++.|. .|.... +..+....+.. ..|++++-.. .+ .-
T Consensus 5 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~~ 65 (132)
T 2rdm_A 5 AVTILLADDEAI-----------LLLDFESTLTDAGF--LVTAVS------SGAKAIEMLKSGAAIDGVVTDIRFCQPPD 65 (132)
T ss_dssp SCEEEEECSSHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTTCCCCEEEEESCCSSSSC
T ss_pred CceEEEEcCcHH-----------HHHHHHHHHHHcCC--EEEEEC------CHHHHHHHHHcCCCCCEEEEeeeCCCCCC
Confidence 357788877643 34556666666554 344332 24566666664 2577776433 33 45
Q ss_pred cHHHHHHHH---cCCcEEEc-Cccccc---cccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 679 GLTVVEAMT---CGLPTFAT-CHGGPA---EIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 679 GltvlEAMa---~GlPVIaT-~~GG~~---EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
|+.+++.+. ..+|+|.. ...... +.+.. .|++..|.+.+++.++|.+++
T Consensus 66 g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~--~~~l~kP~~~~~l~~~i~~~~ 121 (132)
T 2rdm_A 66 GWQVARVAREIDPNMPIVYISGHAALEWASNGVPD--SIILEKPFTSAQLITAVSQLL 121 (132)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTT--CEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCC--cceEeCCCCHHHHHHHHHHHH
Confidence 777777664 36888774 333222 22222 379999999999999998776
No 113
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=31.18 E-value=56 Score=33.46 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=24.6
Q ss_pred CceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCcee
Q 003985 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 331 (781)
Q Consensus 277 ~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~ 331 (781)
|||||++|..| |..+| ..++|.+.+++.+.+.|++|+
T Consensus 1 ~MmkiLiI~gS-----------pr~~s-------~t~~la~~~~~~l~~~g~eV~ 37 (273)
T 1d4a_A 1 VGRRALIVLAH-----------SERTS-------FNYAMKEAAAAALKKKGWEVV 37 (273)
T ss_dssp CCCEEEEEECC-----------SCTTS-------HHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEEEeC-----------CCCcc-------HHHHHHHHHHHHHHhCCCeEE
Confidence 46899999744 33333 223444567778888999998
No 114
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=30.38 E-value=31 Score=35.80 Aligned_cols=51 Identities=8% Similarity=-0.075 Sum_probs=30.4
Q ss_pred hhcCCCcccHhhhhcCCCCceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCcee
Q 003985 259 ILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 331 (781)
Q Consensus 259 ~~~~p~~~~~~~f~~r~p~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~ 331 (781)
.+..|+...|.. ..++|||++|+- .|..+|.... |.+.+++.+.+.|++|+
T Consensus 43 ~~~~~~~~~~~~----~~~~mKILiI~G-----------S~R~~S~T~~-------La~~~~~~l~~~G~eve 93 (279)
T 2fzv_A 43 FAIERPALGLAP----DAPPVRILLLYG-----------SLRARSFSRL-------AVEEAARLLQFFGAETR 93 (279)
T ss_dssp TCCSCTTTTTSC----CCSCCEEEEEES-----------CCSSSCHHHH-------HHHHHHHHHHHTTCEEE
T ss_pred HcCCCChhhccC----CCCCCEEEEEEe-----------CCCCCCHHHH-------HHHHHHHHHhhCCCEEE
Confidence 445555554432 145789999973 2344554333 33356677788899988
No 115
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=30.38 E-value=2.3e+02 Score=28.65 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=23.1
Q ss_pred cCCCceEEEE--cC-C--------CchHHHHHHHHHcCCcEEEEec
Q 003985 404 LQGFPDFIIG--NY-S--------DGNLVASLLAYKMGITQCTIAH 438 (781)
Q Consensus 404 l~~~pDIIh~--~~-~--------~~~lva~llar~~gvp~v~t~H 438 (781)
+..+||+|++ |. . .+-..|+.-+..+|+|-+..-.
T Consensus 84 l~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 129 (244)
T 2e6c_A 84 LFGPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSV 129 (244)
T ss_dssp HSCSCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCEEEECCccCCCCCcCeechHhHHHHHHHHhcCCCeEEEec
Confidence 3568999994 21 1 1235566777788999987644
No 116
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=29.58 E-value=2.3e+02 Score=24.74 Aligned_cols=109 Identities=10% Similarity=0.016 Sum_probs=66.0
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHc-CCCCcEEEeccccCcCChHHHHHHHHc--cCcEEEEcCC-CCCC
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTY-KLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPAF-YEAF 678 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el-~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~-~E~f 678 (781)
..+++||.+.+. ....+....++. |. ..|.... +..+....+.. ..|++++-.. .+.-
T Consensus 3 ~~~iLivdd~~~-----------~~~~l~~~L~~~~g~-~~v~~~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~ 64 (154)
T 2qsj_A 3 LTVVLIVDDHHL-----------IRAGAKNLLEGAFSG-MRVEGAE------TVSDALAFLEADNTVDLILLDVNLPDAE 64 (154)
T ss_dssp CEEEEEECSCHH-----------HHHHHHHHHHHHCTT-EEEEEES------SHHHHHHHHHTTCCCSEEEECC------
T ss_pred ccEEEEEcCCHH-----------HHHHHHHHHHhCCCc-eEEEEec------CHHHHHHHHhccCCCCEEEEeCCCCCCc
Confidence 357778876643 355666666665 32 1233332 24566666653 3577777543 2345
Q ss_pred cHHHHHHHH---cCCcEEEc-Ccc---ccccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 679 GLTVVEAMT---CGLPTFAT-CHG---GPAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 679 GltvlEAMa---~GlPVIaT-~~G---G~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
|+.+++.+. .++|+|.. ... ...+.+..|..|++..|.+.+++.++|..++
T Consensus 65 g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~ 122 (154)
T 2qsj_A 65 AIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLIL 122 (154)
T ss_dssp CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHH
Confidence 777776664 46888874 322 2234456788999999999999999998776
No 117
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=29.10 E-value=32 Score=32.95 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=15.7
Q ss_pred HHHHHHHHCCCceeeceeEEEcc
Q 003985 318 EMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VlT~~ 340 (781)
.+++.|.++|++|. +++|.
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~ 33 (221)
T 3ew7_A 15 RILEEAKNRGHEVT----AIVRN 33 (221)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHhCCCEEE----EEEcC
Confidence 56678899999998 88876
No 118
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=28.70 E-value=2.6e+02 Score=23.79 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=68.1
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++|+.+.+. ..+.+.+..++.+ -.|.... +..+....+.. ..|++++-. ..+.-|+
T Consensus 7 ~~~ilivdd~~~-----------~~~~l~~~L~~~~--~~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~ 67 (137)
T 3hdg_A 7 ALKILIVEDDTD-----------AREWLSTIISNHF--PEVWSAG------DGEEGERLFGLHAPDVIITDIRMPKLGGL 67 (137)
T ss_dssp CCCEEEECSCHH-----------HHHHHHHHHHTTC--SCEEEES------SHHHHHHHHHHHCCSEEEECSSCSSSCHH
T ss_pred ccEEEEEeCCHH-----------HHHHHHHHHHhcC--cEEEEEC------CHHHHHHHHhccCCCEEEEeCCCCCCCHH
Confidence 357788877643 3455666666533 2354443 23445554432 357777754 3455677
Q ss_pred HHHHHHHc---CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 681 TVVEAMTC---GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~---GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.+++.+.. .+|+|.. .... ..+.+..|..+++..|.+.+++.++|.+++
T Consensus 68 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (137)
T 3hdg_A 68 EMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFR 123 (137)
T ss_dssp HHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 77776653 6788774 3322 234556789999999999999999998776
No 119
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=28.16 E-value=2.7e+02 Score=23.42 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=66.7
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH-ccCcEEEEcC-CCCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA-DTKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fGl 680 (781)
..+++||.+.+. ....+.+..++.|. .|.... +..+....+. ...|++++-. ..+.-|+
T Consensus 6 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~ 66 (132)
T 3lte_A 6 SKRILVVDDDQA-----------MAAAIERVLKRDHW--QVEIAH------NGFDAGIKLSTFEPAIMTLDLSMPKLDGL 66 (132)
T ss_dssp -CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHTCCSEEEEESCBTTBCHH
T ss_pred CccEEEEECCHH-----------HHHHHHHHHHHCCc--EEEEeC------CHHHHHHHHHhcCCCEEEEecCCCCCCHH
Confidence 357777776543 35566666666543 344332 2345555443 2356766643 3455678
Q ss_pred HHHHHHHc-----CCcEEEcCccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 681 TVVEAMTC-----GLPTFATCHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~-----GlPVIaT~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.+++.+.. ..|++.+.... ..+.+..|..+++..|.+.+++.++|.+..
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (132)
T 3lte_A 67 DVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLV 123 (132)
T ss_dssp HHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHc
Confidence 88887753 35555553222 234556789999999999999999997765
No 120
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.03 E-value=1.7e+02 Score=25.29 Aligned_cols=107 Identities=14% Similarity=0.238 Sum_probs=68.1
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHH-cCCCCcEEEeccccCcCChHHHHHHHHc--cCcEEEEcCCC--CCC
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKT-YKLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPAFY--EAF 678 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~e-l~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~~--E~f 678 (781)
.+++||.+.+. ....+....++ .|. .|.... +..+....+.. ..|++++-... +.-
T Consensus 5 ~~ilivdd~~~-----------~~~~l~~~L~~~~~~--~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~ 65 (140)
T 3lua_A 5 GTVLLIDYFEY-----------EREKTKIIFDNIGEY--DFIEVE------NLKKFYSIFKDLDSITLIIMDIAFPVEKE 65 (140)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHHCCC--EEEEEC------SHHHHHTTTTTCCCCSEEEECSCSSSHHH
T ss_pred CeEEEEeCCHH-----------HHHHHHHHHHhccCc--cEEEEC------CHHHHHHHHhcCCCCcEEEEeCCCCCCCc
Confidence 56777776643 35566666766 544 344332 23455555542 36777775433 234
Q ss_pred cHHHHHHHHc-----CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 679 GLTVVEAMTC-----GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 679 GltvlEAMa~-----GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
|+.+++.+.. .+|||.. .... ..+.+..|..+++..|.+.+++.++|..++
T Consensus 66 g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (140)
T 3lua_A 66 GLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVL 125 (140)
T ss_dssp HHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 6677766554 7888874 3332 234456788999999999999999998877
No 121
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=27.66 E-value=35 Score=32.87 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=15.6
Q ss_pred HHHHHHHHCCCceeeceeEEEcc
Q 003985 318 EMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VlT~~ 340 (781)
.++++|.++|++|. +++|.
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~ 33 (224)
T 3h2s_A 15 AIVAEARRRGHEVL----AVVRD 33 (224)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHHCCCEEE----EEEec
Confidence 56678899999998 88776
No 122
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=27.35 E-value=3e+02 Score=23.63 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=67.8
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcHH
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLT 681 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGlt 681 (781)
.+++||.+.+. ..+.+..+.++.|. .|.... +..+..+.+.. ..|++++=. ..+.-|+.
T Consensus 5 ~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~ 65 (136)
T 3t6k_A 5 HTLLIVDDDDT-----------VAEMLELVLRGAGY--EVRRAA------SGEEALQQIYKNLPDALICDVLLPGIDGYT 65 (136)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHH
T ss_pred CEEEEEeCCHH-----------HHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 46777776543 34556666666553 344332 23455555542 357777643 33455778
Q ss_pred HHHHHHc-----CCcEEE-cCcccc---ccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003985 682 VVEAMTC-----GLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 682 vlEAMa~-----GlPVIa-T~~GG~---~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~ 730 (781)
+++.+.. .+|+|. |..+.. .+.+..|..+++..|.+.+++..+|.+++.
T Consensus 66 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~ 123 (136)
T 3t6k_A 66 LCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILA 123 (136)
T ss_dssp HHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHh
Confidence 8777643 678876 333332 234567889999999999999999987763
No 123
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=26.91 E-value=2.9e+02 Score=23.32 Aligned_cols=107 Identities=10% Similarity=0.108 Sum_probs=64.3
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEE-EeccccCcCChHHHHHHHH-ccCcEEEEcC-CCCCCcH
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR-WIAAQTNRARNGELYRYIA-DTKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~-flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fGl 680 (781)
.+++|+.+.+. ..+.+....++.|. .+. ... + ..+....+. ...|+++.-. ..+.-|+
T Consensus 2 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~~---~---~~~a~~~~~~~~~dlii~d~~l~~~~g~ 62 (134)
T 3f6c_A 2 LNAIIIDDHPL-----------AIAAIRNLLIKNDI--EILAELT---E---GGSAVQRVETLKPDIVIIDVDIPGVNGI 62 (134)
T ss_dssp EEEEEECCCHH-----------HHHHHHHHHHHTTE--EEEEEES---S---STTHHHHHHHHCCSEEEEETTCSSSCHH
T ss_pred eEEEEEcCCHH-----------HHHHHHHHHhhCCc--EEEEEcC---C---HHHHHHHHHhcCCCEEEEecCCCCCChH
Confidence 46677776543 35566677776652 232 222 1 122333332 2367766643 3455677
Q ss_pred HHHHHHHc---CCcEEEc-Ccc---ccccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 681 TVVEAMTC---GLPTFAT-CHG---GPAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~---GlPVIaT-~~G---G~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.+++.+.. .+|+|.. ... ...+.+..|..|++..|.+.+++.++|..++
T Consensus 63 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 118 (134)
T 3f6c_A 63 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 118 (134)
T ss_dssp HHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHH
Confidence 77776653 5677763 322 2344556788999999999999999998776
No 124
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=26.64 E-value=3.2e+02 Score=28.14 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCCceEEEE--cC----C------CchHHHHHHHHHcCCcEEEEec
Q 003985 405 QGFPDFIIG--NY----S------DGNLVASLLAYKMGITQCTIAH 438 (781)
Q Consensus 405 ~~~pDIIh~--~~----~------~~~lva~llar~~gvp~v~t~H 438 (781)
..+||+|++ |. . .|-..|++-+..+|+|-+..-.
T Consensus 82 ~~~PDLVvSGIN~G~Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~ 127 (280)
T 1l5x_A 82 GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSA 127 (280)
T ss_dssp TSCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCEEEECCccCCcCCccccccchhHHHHHHHHHcCCCeEEEEc
Confidence 458999994 11 1 1124566677778999987643
No 125
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=26.34 E-value=3.3e+02 Score=23.80 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=66.6
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcHH
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLT 681 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGlt 681 (781)
.+++|+.+.+. ....+.....+.|. .|.... +..+....+.. ..|++++-. ..+.-|+.
T Consensus 4 ~~ILivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dliild~~l~~~~g~~ 64 (155)
T 1qkk_A 4 PSVFLIDDDRD-----------LRKAMQQTLELAGF--TVSSFA------SATEALAGLSADFAGIVISDIRMPGMDGLA 64 (155)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHTCCTTCCSEEEEESCCSSSCHHH
T ss_pred CEEEEEeCCHH-----------HHHHHHHHHHHcCc--EEEEEC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 46777776643 35566666666654 344332 23444544432 246666643 33445677
Q ss_pred HHHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 682 VVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 682 vlEAMa---~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
+++.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++...|..++
T Consensus 65 ~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 119 (155)
T 1qkk_A 65 LFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAE 119 (155)
T ss_dssp HHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Confidence 766654 47888764 3332 334556788999999999999999998776
No 126
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=24.96 E-value=39 Score=33.16 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=40.1
Q ss_pred HHHHHHHccCcEEEEcCCCCCCcH--HHHHHHHcCCcEEEcCc-ccccccc----ccC------CeEEEECCCCHHHHHH
Q 003985 657 ELYRYIADTKGAFVQPAFYEAFGL--TVVEAMTCGLPTFATCH-GGPAEII----EHG------ASGFHIDPYHPDQAAE 723 (781)
Q Consensus 657 el~~~la~aadvfV~PS~~E~fGl--tvlEAMa~GlPVIaT~~-GG~~EiI----~dg------~~G~lv~p~d~e~lA~ 723 (781)
+--+.+...+|+||.-. -++|. .+.||+..|+||++-+. |...+.+ .+| ....+.-.+|++++.+
T Consensus 110 ~Rk~~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~ 187 (195)
T 1rcu_A 110 MRSFVLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQ 187 (195)
T ss_dssp HHHHHHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHH
T ss_pred HHHHHHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHH
Confidence 33455555677766532 34554 47899999999999864 3333222 221 1112222358898888
Q ss_pred HHHH
Q 003985 724 LMAD 727 (781)
Q Consensus 724 ~I~~ 727 (781)
.|.+
T Consensus 188 ~l~~ 191 (195)
T 1rcu_A 188 IIEQ 191 (195)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8754
No 127
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=24.87 E-value=73 Score=32.23 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=27.1
Q ss_pred HhhhhcCCC-CceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCcee
Q 003985 268 LEKFLGRLP-MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 331 (781)
Q Consensus 268 ~~~f~~r~p-~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~ 331 (781)
.+.|-..-+ ++|||++|+- .|..+|.... |.+.+++.+.+.|++|+
T Consensus 23 ~~~~~~~~~~~~mkIliI~G-----------S~r~~s~t~~-------La~~~~~~l~~~g~eve 69 (247)
T 2q62_A 23 SASLRPAFSTHRPRILILYG-----------SLRTVSYSRL-------LAEEARRLLEFFGAEVK 69 (247)
T ss_dssp GGGGCCCCCCSCCEEEEEEC-----------CCCSSCHHHH-------HHHHHHHHHHHTTCEEE
T ss_pred hhhhhhhccCCCCeEEEEEc-----------cCCCCCHHHH-------HHHHHHHHHhhCCCEEE
Confidence 344433334 4589999973 2334453322 23356667778899988
No 128
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.84 E-value=1.8e+02 Score=25.00 Aligned_cols=107 Identities=10% Similarity=0.160 Sum_probs=64.3
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCCCCCCcHHH
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAFYEAFGLTV 682 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGltv 682 (781)
.+++|+.+.+. ....+....++.|. .|.... +..+....+.. ..|++++-...+.-|+.+
T Consensus 5 ~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~ 65 (142)
T 2qxy_A 5 PTVMVVDESRI-----------TFLAVKNALEKDGF--NVIWAK------NEQEAFTFLRREKIDLVFVDVFEGEESLNL 65 (142)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHGGGTC--EEEEES------SHHHHHHHHTTSCCSEEEEECTTTHHHHHH
T ss_pred CeEEEEeCCHH-----------HHHHHHHHHHhCCC--EEEEEC------CHHHHHHHHhccCCCEEEEeCCCCCcHHHH
Confidence 56777776543 34556666665553 344332 23455555542 246666644222235555
Q ss_pred HHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 683 VEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 683 lEAMa---~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
++.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++.+.|..++
T Consensus 66 ~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 119 (142)
T 2qxy_A 66 IRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKII 119 (142)
T ss_dssp HHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHH
Confidence 55553 36888764 3333 233456788999999999999999998776
No 129
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=24.81 E-value=3.1e+02 Score=23.03 Aligned_cols=76 Identities=5% Similarity=0.087 Sum_probs=49.7
Q ss_pred hHHHHHHHH-ccCcEEEEcC-CCCCCcHHHHHHHHc-----CCcEEEc-Ccc--ccccccccCCeEEEECCCCHHHHHHH
Q 003985 655 NGELYRYIA-DTKGAFVQPA-FYEAFGLTVVEAMTC-----GLPTFAT-CHG--GPAEIIEHGASGFHIDPYHPDQAAEL 724 (781)
Q Consensus 655 ~~el~~~la-~aadvfV~PS-~~E~fGltvlEAMa~-----GlPVIaT-~~G--G~~EiI~dg~~G~lv~p~d~e~lA~~ 724 (781)
..+....+. ...|++++-. ..+.-|+.+++.+.. ++|+|.. ... ...+.+..|..+++..|.+.+++.++
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 115 (133)
T 3nhm_A 36 GASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQ 115 (133)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHH
Confidence 345555543 2356766643 345567777777654 6888774 222 22445667888999999999999999
Q ss_pred HHHHHH
Q 003985 725 MADFFG 730 (781)
Q Consensus 725 I~~~l~ 730 (781)
|..++.
T Consensus 116 i~~~l~ 121 (133)
T 3nhm_A 116 LHALLA 121 (133)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988873
No 130
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=24.67 E-value=47 Score=34.28 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=15.9
Q ss_pred HHHHHHHHCCCceeeceeEEEccC
Q 003985 318 EMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VlT~~~ 341 (781)
.+++.|.++|++|. ++++..
T Consensus 28 ~l~~~L~~~g~~V~----~~~r~~ 47 (342)
T 2x4g_A 28 HAARAIRAAGHDLV----LIHRPS 47 (342)
T ss_dssp HHHHHHHHTTCEEE----EEECTT
T ss_pred HHHHHHHHCCCEEE----EEecCh
Confidence 56677889999998 888763
No 131
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=23.97 E-value=2.2e+02 Score=23.94 Aligned_cols=108 Identities=10% Similarity=0.103 Sum_probs=65.8
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCC-CCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAF-YEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGl 680 (781)
..+++|+.+.+. ....+.+..++.|. .+.... +..+..+.+.. ..|++++-.. .+.-|+
T Consensus 7 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~ 67 (130)
T 3eod_A 7 GKQILIVEDEQV-----------FRSLLDSWFSSLGA--TTVLAA------DGVDALELLGGFTPDLMICDIAMPRMNGL 67 (130)
T ss_dssp TCEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHHHTTCCCSEEEECCC-----CH
T ss_pred CCeEEEEeCCHH-----------HHHHHHHHHHhCCc--eEEEeC------CHHHHHHHHhcCCCCEEEEecCCCCCCHH
Confidence 467888887643 35566777777653 344332 24566666643 2467776432 345577
Q ss_pred HHHHHHHc---CCcEEEc-Ccccc---ccccccCCeEEEECCC-CHHHHHHHHHHHH
Q 003985 681 TVVEAMTC---GLPTFAT-CHGGP---AEIIEHGASGFHIDPY-HPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~---GlPVIaT-~~GG~---~EiI~dg~~G~lv~p~-d~e~lA~~I~~~l 729 (781)
.+++.+.. .+|+|.. ..... .+.+..|..+++..|. +.+.+.+.|..++
T Consensus 68 ~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l 124 (130)
T 3eod_A 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 (130)
T ss_dssp HHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHh
Confidence 77776643 5787764 33322 3455678999999998 8999999998776
No 132
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=23.95 E-value=3.2e+02 Score=22.82 Aligned_cols=108 Identities=13% Similarity=0.215 Sum_probs=67.1
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCC-CCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAF-YEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGl 680 (781)
..+++|+.+.+. ..+.+....+..|. .|.... +..+....+.. ..|++++=.. ...-|+
T Consensus 3 ~~~ilivdd~~~-----------~~~~l~~~l~~~~~--~v~~~~------~~~~~~~~~~~~~~dlvi~D~~l~~~~g~ 63 (126)
T 1dbw_A 3 DYTVHIVDDEEP-----------VRKSLAFMLTMNGF--AVKMHQ------SAEAFLAFAPDVRNGVLVTDLRMPDMSGV 63 (126)
T ss_dssp CCEEEEEESSHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHHGGGCCSEEEEEECCSTTSCHH
T ss_pred CCEEEEEcCCHH-----------HHHHHHHHHHhCCc--EEEEeC------CHHHHHHHHhcCCCCEEEEECCCCCCCHH
Confidence 357788877643 34556666666553 344332 23455555543 2466665332 234577
Q ss_pred HHHHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 681 TVVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa---~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.+++.+. ..+|+|.. .... ..+.+..|..|++..|.+.+++.+.|..++
T Consensus 64 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 119 (126)
T 1dbw_A 64 ELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERAS 119 (126)
T ss_dssp HHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 7777664 46788764 4333 234456788999999999999999997765
No 133
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=23.38 E-value=3.3e+02 Score=23.60 Aligned_cols=108 Identities=12% Similarity=0.132 Sum_probs=64.9
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++||.+.+. ....+..+.++.|. .|.... +..+....+.. ..|++++=. ..+.-|+
T Consensus 14 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvl~D~~mp~~~g~ 74 (143)
T 3m6m_D 14 SMRMLVADDHEA-----------NRMVLQRLLEKAGH--KVLCVN------GAEQVLDAMAEEDYDAVIVDLHMPGMNGL 74 (143)
T ss_dssp -CEEEEECSSHH-----------HHHHHHHHHHC--C--EEEEES------SHHHHHHHHHHSCCSEEEEESCCSSSCHH
T ss_pred cceEEEEeCCHH-----------HHHHHHHHHHHcCC--eEEEeC------CHHHHHHHHhcCCCCEEEEeCCCCCCCHH
Confidence 367888877643 34556666665542 243332 23455555542 357776643 3345677
Q ss_pred HHHHHHH-------cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 681 TVVEAMT-------CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa-------~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.+++.+. ..+|+|.. .... ..+....|..+++..|.+.+++.++|.++.
T Consensus 75 ~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 75 DMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHH
Confidence 8877764 23688774 3222 233445788999999999999999997654
No 134
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=23.29 E-value=3.3e+02 Score=22.72 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=67.6
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcHH
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLT 681 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGlt 681 (781)
.+++|+.+.+. ..+.+.+..++.|. .|.... +..+....+.. ..|++++=. ..+.-|+.
T Consensus 4 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~ 64 (127)
T 3i42_A 4 QQALIVEDYQA-----------AAETFKELLEMLGF--QADYVM------SGTDALHAMSTRGYDAVFIDLNLPDTSGLA 64 (127)
T ss_dssp EEEEEECSCHH-----------HHHHHHHHHHHTTE--EEEEES------SHHHHHHHHHHSCCSEEEEESBCSSSBHHH
T ss_pred ceEEEEcCCHH-----------HHHHHHHHHHHcCC--CEEEEC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 56777776643 35667777777654 344432 24455555542 356666643 34556778
Q ss_pred HHHHHH-----cCCcEEEc-Ccccc--ccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 682 VVEAMT-----CGLPTFAT-CHGGP--AEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 682 vlEAMa-----~GlPVIaT-~~GG~--~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
+++.+. ..+|+|.. ..... .+.+..|..+++..|-+.+++.+++....
T Consensus 65 ~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 65 LVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp HHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhh
Confidence 877764 35788774 32222 44556678899999999999999997653
No 135
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=23.07 E-value=50 Score=33.66 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=25.2
Q ss_pred CCceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeeceeEEEcc
Q 003985 276 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 276 p~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VlT~~ 340 (781)
+|+|||+||...|. .|+ .++..|.+.||+|. ++.+.
T Consensus 9 ~mmm~I~iIG~tG~-----------mG~--------------~la~~l~~~g~~V~----~~~r~ 44 (286)
T 3c24_A 9 VGPKTVAILGAGGK-----------MGA--------------RITRKIHDSAHHLA----AIEIA 44 (286)
T ss_dssp CCCCEEEEETTTSH-----------HHH--------------HHHHHHHHSSSEEE----EECCS
T ss_pred ccCCEEEEECCCCH-----------HHH--------------HHHHHHHhCCCEEE----EEECC
Confidence 57789999964333 232 57778899999887 66443
No 136
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=23.05 E-value=3.2e+02 Score=22.50 Aligned_cols=106 Identities=9% Similarity=0.093 Sum_probs=66.3
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CC-CCCcH
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FY-EAFGL 680 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~-E~fGl 680 (781)
.+++|+.+.+. ..+.+....++.|. +|.... +..+....+.. ..|+++.-. .. ..-|+
T Consensus 6 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~ 66 (127)
T 2gkg_A 6 KKILIVESDTA-----------LSATLRSALEGRGF--TVDETT------DGKGSVEQIRRDRPDLVVLAVDLSAGQNGY 66 (127)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHHTC--EEEEEC------CHHHHHHHHHHHCCSEEEEESBCGGGCBHH
T ss_pred CeEEEEeCCHH-----------HHHHHHHHHHhcCc--eEEEec------CHHHHHHHHHhcCCCEEEEeCCCCCCCCHH
Confidence 36777776543 35566666666554 344332 23444544432 356766643 22 34577
Q ss_pred HHHHHHH-----cCCcEEEcCcccc----ccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 681 TVVEAMT-----CGLPTFATCHGGP----AEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa-----~GlPVIaT~~GG~----~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.+++.+. ..+|+|.. .... .+.+..|..+++..|.+.+++.+.|..++
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 67 LICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALI 123 (127)
T ss_dssp HHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHH
Confidence 7777764 46898887 3322 33456788999999999999999997765
No 137
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.75 E-value=3.4e+02 Score=22.71 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=66.6
Q ss_pred EEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcHHH
Q 003985 605 NLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLTV 682 (781)
Q Consensus 605 ~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGltv 682 (781)
+++||.+.+. ....+....++.|. .|.... +..+..+.+.. ..|++++=. ..+.-|+.+
T Consensus 4 ~ILivdd~~~-----------~~~~l~~~l~~~g~--~v~~~~------~~~~al~~l~~~~~dlvllD~~~p~~~g~~~ 64 (122)
T 3gl9_A 4 KVLLVDDSAV-----------LRKIVSFNLKKEGY--EVIEAE------NGQIALEKLSEFTPDLIVLXIMMPVMDGFTV 64 (122)
T ss_dssp EEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHTTBCCSEEEECSCCSSSCHHHH
T ss_pred eEEEEeCCHH-----------HHHHHHHHHHHCCc--EEEEeC------CHHHHHHHHHhcCCCEEEEeccCCCCcHHHH
Confidence 5666666532 34556666666653 344332 24555666543 246776643 345568888
Q ss_pred HHHHH-----cCCcEEE-cCcccc---ccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 683 VEAMT-----CGLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 683 lEAMa-----~GlPVIa-T~~GG~---~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
++.+. ..+|+|. |..+.. .+.+..|..+++..|.+.+++.++|.+++
T Consensus 65 ~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 65 LKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp HHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 88774 3578876 443333 23446788999999999999999997765
No 138
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=22.50 E-value=58 Score=33.35 Aligned_cols=20 Identities=15% Similarity=-0.067 Sum_probs=15.9
Q ss_pred HHHHHHHHCCCceeeceeEEEccC
Q 003985 318 EMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VlT~~~ 341 (781)
.+++.|.++|++|. +++|..
T Consensus 19 ~l~~~L~~~g~~V~----~~~R~~ 38 (321)
T 3c1o_A 19 FMVRASLSFSHPTF----IYARPL 38 (321)
T ss_dssp HHHHHHHHTTCCEE----EEECCC
T ss_pred HHHHHHHhCCCcEE----EEECCc
Confidence 45677888999998 888863
No 139
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=22.33 E-value=3.5e+02 Score=28.33 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=13.8
Q ss_pred HHHHHHHHCCCceeeceeEEEc
Q 003985 318 EMLLRIKRQGLDISPKILIVTR 339 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VlT~ 339 (781)
++++.+++.|++|. ++..
T Consensus 25 ~~~~a~~~~G~~v~----~~~~ 42 (391)
T 1kjq_A 25 EVAIECQRLGVEVI----AVDR 42 (391)
T ss_dssp HHHHHHHTTTCEEE----EEES
T ss_pred HHHHHHHHcCCEEE----EEEC
Confidence 56778899999887 6643
No 140
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=22.23 E-value=2.2e+02 Score=26.87 Aligned_cols=107 Identities=11% Similarity=0.145 Sum_probs=65.1
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcC-CCCCCcHHH
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPA-FYEAFGLTV 682 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS-~~E~fGltv 682 (781)
.+++||.+.+. ..+.+....++.+ .|.... +..+....+. ..|++++=. ..+.-|+.+
T Consensus 3 ~~ilivdd~~~-----------~~~~l~~~L~~~~---~v~~~~------~~~~al~~~~-~~dlvllD~~lp~~~g~~~ 61 (220)
T 1p2f_A 3 WKIAVVDDDKN-----------ILKKVSEKLQQLG---RVKTFL------TGEDFLNDEE-AFHVVVLDVMLPDYSGYEI 61 (220)
T ss_dssp EEEEEECSCHH-----------HHHHHHHHHTTTE---EEEEES------SHHHHHHCCS-CCSEEEEESBCSSSBHHHH
T ss_pred ceEEEEeCCHH-----------HHHHHHHHHHhCC---CEEEEC------CHHHHHHhcC-CCCEEEEeCCCCCCCHHHH
Confidence 35667766543 3444555555443 344332 2344444443 477777643 334457777
Q ss_pred HHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHHHh
Q 003985 683 VEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFFGK 731 (781)
Q Consensus 683 lEAMa---~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~~ 731 (781)
++.+. ..+|+|.- .... ..+.+..|..|++..|.+.+++.++|..++..
T Consensus 62 ~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 62 CRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp HHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 76664 47888774 3332 23345578899999999999999999887743
No 141
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=22.02 E-value=3.9e+02 Score=23.19 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=65.7
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCC-CCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAF-YEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGl 680 (781)
..+++|+.+.+. ..+.+....++. ..+...+. ..+..+....+.. ..|++++-.. .+.-|+
T Consensus 5 ~~~ILivdd~~~-----------~~~~l~~~L~~~---~~~~v~~~---~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~ 67 (153)
T 3cz5_A 5 TARIMLVDDHPI-----------VREGYRRLIERR---PGYAVVAE---AADAGEAYRLYRETTPDIVVMDLTLPGPGGI 67 (153)
T ss_dssp CEEEEEECSCHH-----------HHHHHHHHHTTS---TTEEEEEE---ESSHHHHHHHHHTTCCSEEEECSCCSSSCHH
T ss_pred ccEEEEECCcHH-----------HHHHHHHHHhhC---CCcEEEEE---eCCHHHHHHHHhcCCCCEEEEecCCCCCCHH
Confidence 367788877643 244455555431 12333321 1124555665553 2477776433 344577
Q ss_pred HHHHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003985 681 TVVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa---~GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.+++.+. .++|+|+. .... ..+.+..|..|++..|.+.+++.+.|..++
T Consensus 68 ~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 68 EATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHH
Confidence 7776664 36788774 3322 334456788999999999999999997765
No 142
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=21.83 E-value=74 Score=32.43 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=18.3
Q ss_pred cccCCeeeecccccCCHHHHHHHHHHHHHHhcCCCC
Q 003985 187 HKYKGHLLMLNDRIQSISRLQSSLSKAEDHLSKLPP 222 (781)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (781)
|+|+.-..+++++|.|.++++..+. .-.|..+|.
T Consensus 6 ~~~~~~~~~~~~~i~~~~~ie~~~~--~p~lg~iP~ 39 (271)
T 3bfv_A 6 HHHHHGSVIFDKRIKDEEDVEKELG--LPVLGSIQK 39 (271)
T ss_dssp ----------CCCCCSHHHHHHHHC--CCEEEEEEC
T ss_pred cccccccEEeeCcCCCHHHHHHHhC--CCeEEEecc
Confidence 4444557899999999998887653 456666665
No 143
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=21.72 E-value=56 Score=30.65 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=16.0
Q ss_pred HHHHHHHHCCCceeeceeEEEccC
Q 003985 318 EMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VlT~~~ 341 (781)
.+++.|.++|++|. +++|..
T Consensus 18 ~l~~~l~~~g~~V~----~~~r~~ 37 (206)
T 1hdo_A 18 TTLAQAVQAGYEVT----VLVRDS 37 (206)
T ss_dssp HHHHHHHHTTCEEE----EEESCG
T ss_pred HHHHHHHHCCCeEE----EEEeCh
Confidence 56678899999998 888763
No 144
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=21.56 E-value=41 Score=32.47 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=16.3
Q ss_pred HHHHHHHHCCCceeeceeEEEccC
Q 003985 318 EMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VlT~~~ 341 (781)
.+++.|.++|++|. +++|..
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~~ 34 (219)
T 3dqp_A 15 SLLKSLSTTDYQIY----AGARKV 34 (219)
T ss_dssp HHHHHHTTSSCEEE----EEESSG
T ss_pred HHHHHHHHCCCEEE----EEECCc
Confidence 56678899999998 888763
No 145
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=21.47 E-value=99 Score=30.69 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=24.4
Q ss_pred hhcCCCCceEEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCcee
Q 003985 271 FLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 331 (781)
Q Consensus 271 f~~r~p~~~rI~ivS~hg~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~ 331 (781)
|..+-+ ||||++|.-|-.+. ...|+. .++|.+.+++.+.+.|++|+
T Consensus 19 ~~~~~~-M~kiLiI~gsp~~~-------~s~~s~-------n~~L~~~~~~~l~~~g~ev~ 64 (218)
T 3rpe_A 19 YFQSNA-MSNVLIINAMKEFA-------HSKGAL-------NLTLTNVAADFLRESGHQVK 64 (218)
T ss_dssp C----C-CCCEEEEECCCCBT-------TBCSHH-------HHHHHHHHHHHHHHTTCCEE
T ss_pred cccccc-CcceEEEEeCCCcc-------cCCChH-------HHHHHHHHHHHHhhCCCEEE
Confidence 333444 48999997543210 001222 23344466677888999998
No 146
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=21.18 E-value=4.5e+02 Score=23.57 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=13.6
Q ss_pred HHHHHHHHCCCceeeceeEEEcc
Q 003985 318 EMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VlT~~ 340 (781)
.+++.|.+.|++|. .+.+.
T Consensus 32 ~~~~~L~~~G~~V~----~vnp~ 50 (138)
T 1y81_A 32 IILKDLLSKGFEVL----PVNPN 50 (138)
T ss_dssp HHHHHHHHTTCEEE----EECTT
T ss_pred HHHHHHHHCCCEEE----EeCCC
Confidence 56777889999866 56443
No 147
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.84 E-value=4.2e+02 Score=23.05 Aligned_cols=108 Identities=9% Similarity=0.155 Sum_probs=63.1
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003985 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++||.+.+. ....+....++.|. .|.... +..+....+.. ..|++++-. ..+.-|+
T Consensus 14 ~~~ILivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~D~~l~~~~g~ 74 (153)
T 3hv2_A 14 RPEILLVDSQEV-----------ILQRLQQLLSPLPY--TLHFAR------DATQALQLLASREVDLVISAAHLPQMDGP 74 (153)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHTTSSC--EEEEES------SHHHHHHHHHHSCCSEEEEESCCSSSCHH
T ss_pred CceEEEECCCHH-----------HHHHHHHHhcccCc--EEEEEC------CHHHHHHHHHcCCCCEEEEeCCCCcCcHH
Confidence 356677766532 24445555555432 233332 23444444432 246666543 3345567
Q ss_pred HHHHHHH---cCCcEEEc-Cccc---cccccccC-CeEEEECCCCHHHHHHHHHHHH
Q 003985 681 TVVEAMT---CGLPTFAT-CHGG---PAEIIEHG-ASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa---~GlPVIaT-~~GG---~~EiI~dg-~~G~lv~p~d~e~lA~~I~~~l 729 (781)
.+++.+. ..+|+|.. .... ..+.+..| ..+++..|.+.+++..+|..++
T Consensus 75 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 75 TLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp HHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHH
Confidence 7766654 46788774 3332 23344567 7899999999999999998776
No 148
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=20.76 E-value=54 Score=33.28 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=16.4
Q ss_pred HHHHHHHHCCCceeeceeEEEccCC
Q 003985 318 EMLLRIKRQGLDISPKILIVTRLIP 342 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VlT~~~p 342 (781)
.+++.|.++|++|. ++++...
T Consensus 22 ~l~~~L~~~g~~V~----~~~r~~~ 42 (321)
T 3vps_A 22 HLARALVASGEEVT----VLDDLRV 42 (321)
T ss_dssp HHHHHHHHTTCCEE----EECCCSS
T ss_pred HHHHHHHHCCCEEE----EEecCCc
Confidence 56678899999998 8877643
No 149
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=20.70 E-value=43 Score=32.30 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=15.9
Q ss_pred HHHHHHHHCCCceeeceeEEEccC
Q 003985 318 EMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VlT~~~ 341 (781)
.+++.|.++|++|. +++|..
T Consensus 19 ~l~~~L~~~g~~V~----~~~r~~ 38 (227)
T 3dhn_A 19 ALLNEALNRGFEVT----AVVRHP 38 (227)
T ss_dssp HHHHHHHTTTCEEE----EECSCG
T ss_pred HHHHHHHHCCCEEE----EEEcCc
Confidence 56678899999998 887763
No 150
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=20.62 E-value=3.1e+02 Score=24.90 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=13.4
Q ss_pred HHHHHHHHCCCceeeceeEEEcc
Q 003985 318 EMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VlT~~ 340 (781)
.+++.|.+.|++|. .+.+.
T Consensus 31 ~~~~~L~~~G~~v~----~vnp~ 49 (145)
T 2duw_A 31 RVMKYLLDQGYHVI----PVSPK 49 (145)
T ss_dssp HHHHHHHHHTCCEE----EECSS
T ss_pred HHHHHHHHCCCEEE----EeCCc
Confidence 56677888999866 66444
No 151
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=20.51 E-value=63 Score=33.49 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.4
Q ss_pred HHHHHHHHCCCceeeceeEEEcc
Q 003985 318 EMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VlT~~ 340 (781)
.++..|++.|++|+ +++|.
T Consensus 16 ~~a~~L~~~g~~V~----~~~r~ 34 (312)
T 3hn2_A 16 YYGALLQRSGEDVH----FLLRR 34 (312)
T ss_dssp HHHHHHHHTSCCEE----EECST
T ss_pred HHHHHHHHCCCeEE----EEEcC
Confidence 46677899999999 88765
No 152
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=20.37 E-value=54 Score=34.14 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.5
Q ss_pred HHHHHHHHCCCceeeceeEEEcc
Q 003985 318 EMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VlT~~ 340 (781)
.++..|++.|++|+ +++|.
T Consensus 16 ~~a~~L~~~g~~V~----~~~r~ 34 (320)
T 3i83_A 16 FYGALLAKTGHCVS----VVSRS 34 (320)
T ss_dssp HHHHHHHHTTCEEE----EECST
T ss_pred HHHHHHHhCCCeEE----EEeCC
Confidence 46677899999999 88775
No 153
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=20.31 E-value=54 Score=31.60 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=15.0
Q ss_pred HHHHHHH-HCCCceeeceeEEEcc
Q 003985 318 EMLLRIK-RQGLDISPKILIVTRL 340 (781)
Q Consensus 318 eLa~~L~-~~GheV~~~v~VlT~~ 340 (781)
.+++.|. ++|++|. +++|.
T Consensus 20 ~~~~~l~~~~g~~V~----~~~r~ 39 (221)
T 3r6d_A 20 XLTATLLTYTDMHIT----LYGRQ 39 (221)
T ss_dssp HHHHHHHHHCCCEEE----EEESS
T ss_pred HHHHHHHhcCCceEE----EEecC
Confidence 4566788 8999998 88776
No 154
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.24 E-value=84 Score=24.33 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.8
Q ss_pred CCCCCCCchhHHHHhhhcCC
Q 003985 219 KLPPDTPFSQFEYVLQGMGF 238 (781)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~ 238 (781)
..++++-|+.--..|++|||
T Consensus 2 ~~~~ee~~a~~L~~L~eMGF 21 (54)
T 2cp8_A 2 SSGSSGQTAALMAHLFEMGF 21 (54)
T ss_dssp CCSSCTTHHHHHHHHHHHTC
T ss_pred CCCHHHhhHHHHHHHHHcCC
Confidence 46788888877779999999
No 155
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}
Probab=20.19 E-value=1.1e+02 Score=31.96 Aligned_cols=126 Identities=15% Similarity=0.092 Sum_probs=66.3
Q ss_pred CCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEE--EeccccCcCChHHHHHH
Q 003985 584 VKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR--WIAAQTNRARNGELYRY 661 (781)
Q Consensus 584 ~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~--flG~~~~~v~~~el~~~ 661 (781)
.+|+|....-.+. .. ....+.|.|.|.+...- ++ -.++.+.+.+-|+- |. ..|..+.+..-.+--|+
T Consensus 143 A~GID~~AH~~aL-~~--~g~TIaVl~~Gld~~YP--~~----n~~L~~~i~~~Gll--iSE~ppg~~p~~~~Fp~RNRi 211 (288)
T 3uqz_A 143 AKGIDTAAHMAAL-QN--GGKTIAVIGTGLDVFYP--KA----NKRLQDYIGNDHLV--LSEYGPGEQPLKFHFPARNRI 211 (288)
T ss_dssp CTTHHHHHHHHHH-HH--TCCEEEECSSCTTCCSS--GG----GHHHHHHHHHHSEE--EESSCTTCCCCTTHHHHHHHH
T ss_pred ccCHHHHHHHHHH-hc--CCCEEEEecccccccCc--hh----hHHHHHHhcccCcE--eeccCCCCCccccccHHHHHH
Confidence 4799988765432 22 23578888888763221 11 22344445544430 00 11111111112223355
Q ss_pred HHccCcEEEEcCCCCCCcH--HHHHHHHcCCcEEEc-------CccccccccccCCeEEEECCCCHHHHHHH
Q 003985 662 IADTKGAFVQPAFYEAFGL--TVVEAMTCGLPTFAT-------CHGGPAEIIEHGASGFHIDPYHPDQAAEL 724 (781)
Q Consensus 662 la~aadvfV~PS~~E~fGl--tvlEAMa~GlPVIaT-------~~GG~~EiI~dg~~G~lv~p~d~e~lA~~ 724 (781)
++.-++..|...-.+.-|. |.-.|+..|+||+|- ..-|+..+|++| .-++ .+++++.+.
T Consensus 212 IagLS~~~vVvEA~~~SGsliTA~~Ale~gR~VfavPG~i~~~~s~G~n~LI~~G--A~lv--~~~~Dil~e 279 (288)
T 3uqz_A 212 IAGLCRGVIVAEAKMRSGSLITCERAMEEGRDVFAIPGSILDGLSDGCHHLIQEG--AKLV--TSGQDVLAE 279 (288)
T ss_dssp HHHHCSEEEEESCCTTCHHHHHHHHHHHTTCEEEECCCCSSSSTTHHHHHHHHTT--CEEC--SSHHHHHHH
T ss_pred HHHcCCeEEEEecCCCChHHHHHHHHHHcCCeEEEECCCCCCccchHHHHHHHCC--CEEE--CCHHHHHHH
Confidence 5555555554443344444 789999999999983 234677788876 3334 256665443
No 156
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=20.13 E-value=5.7e+02 Score=24.32 Aligned_cols=108 Identities=12% Similarity=0.178 Sum_probs=67.1
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH-ccCcEEEEcC-CCCCCcHH
Q 003985 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA-DTKGAFVQPA-FYEAFGLT 681 (781)
Q Consensus 604 ~~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fGlt 681 (781)
.+++||.+.+. ..+.+....++.|. .|.... +..+....+. ...|++++-. ..+.-|+.
T Consensus 6 ~~ILivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlvilD~~l~~~~g~~ 66 (238)
T 2gwr_A 6 QRILVVDDDAS-----------LAEMLTIVLRGEGF--DTAVIG------DGTQALTAVRELRPDLVLLDLMLPGMNGID 66 (238)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEEC------CGGGHHHHHHHHCCSEEEEESSCSSSCHHH
T ss_pred CeEEEEeCCHH-----------HHHHHHHHHHHCCC--EEEEEC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 46777777643 34556666666553 244333 1233344433 2357777643 33445777
Q ss_pred HHHHHHc--CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003985 682 VVEAMTC--GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 682 vlEAMa~--GlPVIaT-~~GG---~~EiI~dg~~G~lv~p~d~e~lA~~I~~~l~ 730 (781)
+++.+.. ++|+|.- .... ..+.+..|..|++..|.+++++.++|..++.
T Consensus 67 ~~~~lr~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 67 VCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp HHHHHHTTCCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 7777653 6888863 3322 3445567899999999999999999987763
Done!