Query 003986
Match_columns 781
No_of_seqs 214 out of 1072
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 10:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 100.0 4E-131 1E-135 1172.7 67.5 707 11-781 1-760 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 100.0 2E-128 8E-133 1149.2 68.5 695 8-781 56-759 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 9.3E-78 3.2E-82 659.0 32.7 357 387-781 3-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 5.1E-65 1.7E-69 564.9 38.5 368 9-403 28-397 (410)
5 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 6.5E-63 2.2E-67 541.4 29.3 354 7-384 9-364 (364)
6 2wzk_A Cullin-5, CUL-5; UBL co 100.0 4.1E-60 1.4E-64 523.8 36.3 357 5-384 9-380 (391)
7 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 9.7E-60 3.3E-64 514.3 38.7 344 7-385 6-353 (354)
8 3o2p_E Cell division control p 99.9 2E-25 6.7E-30 187.7 4.6 82 662-781 7-88 (88)
9 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 9.6E-26 3.3E-30 185.2 2.2 75 670-781 3-77 (77)
10 1iuy_A Cullin-3 homologue; win 99.9 2.4E-25 8.4E-30 189.3 -0.0 82 663-781 11-92 (92)
11 2do7_A Cullin-4B, CUL-4B; heli 99.9 7.6E-25 2.6E-29 188.9 2.9 81 662-781 15-95 (101)
12 2dk5_A DNA-directed RNA polyme 83.6 1 3.6E-05 37.8 4.2 51 575-627 15-67 (91)
13 2jt1_A PEFI protein; solution 82.9 1.2 4.1E-05 36.1 4.2 49 584-634 8-62 (77)
14 3cuo_A Uncharacterized HTH-typ 82.0 1.8 6.2E-05 36.2 5.3 49 579-629 23-71 (99)
15 1qgp_A Protein (double strande 80.8 1.9 6.4E-05 34.9 4.6 57 582-645 16-75 (77)
16 2htj_A P fimbrial regulatory p 80.0 3.6 0.00012 33.3 6.3 43 584-628 4-46 (81)
17 3jth_A Transcription activator 79.5 3.8 0.00013 34.4 6.5 49 579-630 22-70 (98)
18 3lmm_A Uncharacterized protein 79.3 0.88 3E-05 52.0 3.0 137 579-775 429-568 (583)
19 3tgn_A ADC operon repressor AD 79.0 2.5 8.7E-05 38.1 5.6 52 576-630 34-85 (146)
20 3g3z_A NMB1585, transcriptiona 78.7 2.1 7.3E-05 38.6 5.0 51 578-630 29-79 (145)
21 3hsr_A HTH-type transcriptiona 78.6 1.8 6.1E-05 39.0 4.4 52 577-630 33-84 (140)
22 1sfx_A Conserved hypothetical 78.5 1.8 6.2E-05 36.7 4.2 50 578-629 18-67 (109)
23 1wi9_A Protein C20ORF116 homol 78.3 1.3 4.5E-05 35.0 2.8 54 683-781 12-65 (72)
24 1y0u_A Arsenical resistance op 78.0 3.8 0.00013 34.3 6.0 56 579-646 30-85 (96)
25 3ech_A MEXR, multidrug resista 76.7 1.7 5.9E-05 39.1 3.7 52 577-630 34-85 (142)
26 3cdh_A Transcriptional regulat 76.2 3.6 0.00012 37.5 5.9 50 578-629 41-90 (155)
27 3nrv_A Putative transcriptiona 76.1 2.7 9.2E-05 38.0 4.9 51 577-629 37-87 (148)
28 1qbj_A Protein (double-strande 75.8 4.2 0.00014 33.2 5.3 57 582-645 12-71 (81)
29 2frh_A SARA, staphylococcal ac 75.3 2.3 7.8E-05 37.7 4.0 52 577-630 34-87 (127)
30 4hbl_A Transcriptional regulat 75.2 2.3 7.8E-05 38.8 4.1 51 578-630 39-89 (149)
31 1xn7_A Hypothetical protein YH 75.0 2.6 8.9E-05 34.2 3.8 43 585-629 7-49 (78)
32 3oop_A LIN2960 protein; protei 74.6 1.9 6.7E-05 38.8 3.4 51 578-630 35-85 (143)
33 2fbh_A Transcriptional regulat 74.5 3.2 0.00011 37.3 4.9 50 578-629 35-85 (146)
34 2gxg_A 146AA long hypothetical 74.5 4 0.00014 36.6 5.6 49 578-629 35-83 (146)
35 3r0a_A Putative transcriptiona 74.1 2.8 9.6E-05 37.1 4.2 51 577-629 23-75 (123)
36 2k02_A Ferrous iron transport 74.1 2.8 9.6E-05 34.7 3.9 43 585-629 7-49 (87)
37 3bpv_A Transcriptional regulat 73.9 2.5 8.6E-05 37.6 4.0 50 578-629 27-76 (138)
38 2qww_A Transcriptional regulat 73.8 3.2 0.00011 37.8 4.8 49 578-628 39-87 (154)
39 3eco_A MEPR; mutlidrug efflux 73.3 2.9 0.0001 37.3 4.3 50 578-629 29-80 (139)
40 3bj6_A Transcriptional regulat 72.7 3.6 0.00012 37.3 4.8 50 578-629 38-87 (152)
41 3bro_A Transcriptional regulat 72.7 3.8 0.00013 36.5 4.9 50 578-629 32-83 (141)
42 1jgs_A Multiple antibiotic res 72.3 3 0.0001 37.1 4.1 50 578-629 32-81 (138)
43 1u2w_A CADC repressor, cadmium 71.9 5.8 0.0002 34.9 5.8 49 579-629 41-89 (122)
44 2d1h_A ST1889, 109AA long hypo 71.8 3.3 0.00011 35.0 4.1 50 578-629 19-69 (109)
45 2fa5_A Transcriptional regulat 71.7 3.9 0.00013 37.5 4.9 50 578-629 47-96 (162)
46 1oyi_A Double-stranded RNA-bin 71.6 4.7 0.00016 32.9 4.6 44 583-629 20-63 (82)
47 2e1c_A Putative HTH-type trans 71.5 3.7 0.00013 38.7 4.7 66 558-628 8-73 (171)
48 3k0l_A Repressor protein; heli 71.5 2.7 9.2E-05 38.8 3.7 50 578-629 44-93 (162)
49 2fu4_A Ferric uptake regulatio 71.3 4.4 0.00015 32.8 4.5 51 577-629 14-71 (83)
50 3e6m_A MARR family transcripti 70.8 2.9 9.9E-05 38.6 3.7 51 578-630 51-101 (161)
51 3bdd_A Regulatory protein MARR 70.3 3.6 0.00012 36.7 4.2 51 577-629 28-78 (142)
52 3deu_A Transcriptional regulat 69.8 3.9 0.00013 38.0 4.4 51 578-630 51-102 (166)
53 3pqk_A Biofilm growth-associat 69.8 8.4 0.00029 32.4 6.2 60 580-646 23-82 (102)
54 2pex_A Transcriptional regulat 69.7 3.9 0.00013 37.2 4.3 50 578-629 45-94 (153)
55 2nyx_A Probable transcriptiona 69.3 3.3 0.00011 38.6 3.7 51 577-629 42-92 (168)
56 1tbx_A ORF F-93, hypothetical 69.3 4.1 0.00014 34.1 4.1 51 577-629 5-59 (99)
57 2nnn_A Probable transcriptiona 69.1 3.1 0.0001 37.1 3.4 50 578-629 36-85 (140)
58 3lwf_A LIN1550 protein, putati 69.0 11 0.00037 35.1 7.1 59 581-646 30-89 (159)
59 2hr3_A Probable transcriptiona 69.0 4 0.00014 36.7 4.2 50 578-629 33-83 (147)
60 3cjn_A Transcriptional regulat 68.8 4 0.00014 37.5 4.2 50 578-629 50-99 (162)
61 1xmk_A Double-stranded RNA-spe 68.5 5.7 0.0002 32.2 4.5 48 580-629 11-59 (79)
62 1lj9_A Transcriptional regulat 68.5 3.4 0.00012 37.1 3.6 50 578-629 27-76 (144)
63 3bja_A Transcriptional regulat 68.3 2.5 8.4E-05 37.7 2.5 50 578-629 31-80 (139)
64 2a61_A Transcriptional regulat 68.0 3.3 0.00011 37.2 3.3 50 578-629 31-80 (145)
65 2rdp_A Putative transcriptiona 67.9 4.1 0.00014 36.8 4.0 50 578-629 40-89 (150)
66 2eth_A Transcriptional regulat 67.5 4.4 0.00015 37.0 4.1 50 578-629 42-91 (154)
67 1sfu_A 34L protein; protein/Z- 67.3 9.5 0.00033 30.5 5.3 44 585-630 20-63 (75)
68 3t8r_A Staphylococcus aureus C 67.3 11 0.00037 34.2 6.7 46 593-645 27-72 (143)
69 1bby_A RAP30; average structur 67.3 9.8 0.00033 29.9 5.3 57 582-648 10-66 (69)
70 1s3j_A YUSO protein; structura 66.9 3.5 0.00012 37.5 3.4 51 577-629 34-84 (155)
71 3s2w_A Transcriptional regulat 66.9 3 0.0001 38.4 2.8 50 578-629 48-97 (159)
72 1ku9_A Hypothetical protein MJ 66.8 6.8 0.00023 35.1 5.3 50 578-629 24-74 (152)
73 2bv6_A MGRA, HTH-type transcri 66.6 2.9 9.8E-05 37.5 2.6 50 578-629 35-84 (142)
74 2l02_A Uncharacterized protein 66.4 9.4 0.00032 31.0 5.2 37 584-620 12-48 (82)
75 1bja_A Transcription regulator 66.2 6.3 0.00021 33.2 4.4 50 576-627 12-62 (95)
76 3fm5_A Transcriptional regulat 66.2 5.2 0.00018 36.2 4.4 50 578-629 37-87 (150)
77 4b8x_A SCO5413, possible MARR- 66.1 4.4 0.00015 36.9 3.8 51 578-630 33-85 (147)
78 2fbi_A Probable transcriptiona 66.0 3.3 0.00011 37.0 2.9 50 578-629 34-83 (142)
79 1z91_A Organic hydroperoxide r 65.9 4 0.00014 36.7 3.5 50 578-629 38-87 (147)
80 3jw4_A Transcriptional regulat 65.8 2.8 9.4E-05 38.0 2.4 50 578-629 39-90 (148)
81 1p6r_A Penicillinase repressor 65.4 5 0.00017 32.4 3.6 52 577-630 6-61 (82)
82 3f3x_A Transcriptional regulat 65.1 4 0.00014 36.6 3.4 50 577-629 34-83 (144)
83 3k69_A Putative transcription 64.8 6.5 0.00022 36.6 4.8 57 582-645 16-72 (162)
84 2pn6_A ST1022, 150AA long hypo 64.2 9.1 0.00031 34.8 5.6 48 579-628 2-49 (150)
85 2heo_A Z-DNA binding protein 1 63.6 4.3 0.00015 31.7 2.8 45 581-627 11-56 (67)
86 3nqo_A MARR-family transcripti 63.5 5.4 0.00018 38.0 4.1 50 578-629 39-90 (189)
87 4aik_A Transcriptional regulat 63.4 7.6 0.00026 35.5 4.9 51 578-630 29-80 (151)
88 1ylf_A RRF2 family protein; st 63.3 11 0.00039 34.3 6.1 57 582-646 18-74 (149)
89 1xn7_A Hypothetical protein YH 63.2 3.7 0.00013 33.2 2.4 22 749-770 28-49 (78)
90 1ub9_A Hypothetical protein PH 63.1 5.3 0.00018 33.3 3.5 48 579-628 15-62 (100)
91 2v79_A DNA replication protein 63.0 5.8 0.0002 35.8 3.9 52 575-628 27-83 (135)
92 1r1u_A CZRA, repressor protein 62.1 7.1 0.00024 33.3 4.2 48 579-629 25-72 (106)
93 1p6r_A Penicillinase repressor 62.1 2.9 9.9E-05 33.9 1.6 31 749-780 39-69 (82)
94 2oqg_A Possible transcriptiona 62.0 5.9 0.0002 34.0 3.7 48 579-629 20-67 (114)
95 2w25_A Probable transcriptiona 61.6 8.3 0.00028 35.1 4.8 49 578-628 5-53 (150)
96 3kp7_A Transcriptional regulat 61.4 4.4 0.00015 36.8 2.8 49 577-628 35-83 (151)
97 2vn2_A DNAD, chromosome replic 61.2 8.5 0.00029 34.2 4.7 53 576-630 28-85 (128)
98 2y75_A HTH-type transcriptiona 61.0 18 0.00061 31.9 6.9 48 592-646 24-71 (129)
99 2fxa_A Protease production reg 60.8 5.4 0.00018 38.8 3.5 51 578-630 46-96 (207)
100 2k02_A Ferrous iron transport 59.9 4 0.00014 33.8 2.0 23 749-771 28-50 (87)
101 3boq_A Transcriptional regulat 58.8 4.4 0.00015 37.1 2.4 50 578-629 45-95 (160)
102 2cfx_A HTH-type transcriptiona 57.9 11 0.00037 34.1 4.9 49 578-628 3-51 (144)
103 1xd7_A YWNA; structural genomi 57.5 18 0.00061 32.8 6.3 54 583-646 14-67 (145)
104 2wte_A CSA3; antiviral protein 57.5 7.9 0.00027 38.8 4.1 51 577-629 149-199 (244)
105 2ia0_A Putative HTH-type trans 57.1 10 0.00034 35.6 4.6 51 575-627 12-62 (171)
106 2jsc_A Transcriptional regulat 57.0 12 0.00043 32.5 5.0 48 579-629 20-67 (118)
107 2kko_A Possible transcriptiona 56.4 6.1 0.00021 33.9 2.7 46 581-629 26-71 (108)
108 3ulq_B Transcriptional regulat 56.0 16 0.00055 30.2 5.2 43 575-619 27-69 (90)
109 2xrn_A HTH-type transcriptiona 55.8 13 0.00046 36.9 5.5 55 584-646 10-65 (241)
110 1i1g_A Transcriptional regulat 55.7 9 0.00031 34.3 3.9 48 579-628 3-50 (141)
111 2cg4_A Regulatory protein ASNC 55.0 11 0.00039 34.2 4.6 49 578-628 6-54 (152)
112 1fse_A GERE; helix-turn-helix 54.9 19 0.00065 27.8 5.3 41 577-619 11-51 (74)
113 2obp_A Putative DNA-binding pr 54.4 12 0.00041 31.5 4.1 50 577-628 13-68 (96)
114 2cyy_A Putative HTH-type trans 54.3 12 0.00042 34.0 4.6 49 578-628 5-53 (151)
115 3r4k_A Transcriptional regulat 54.2 10 0.00035 38.2 4.4 56 583-646 9-65 (260)
116 2dbb_A Putative HTH-type trans 54.1 12 0.00042 34.0 4.6 48 578-627 7-54 (151)
117 2p5k_A Arginine repressor; DNA 53.4 17 0.00057 27.4 4.6 37 582-618 7-48 (64)
118 1je8_A Nitrate/nitrite respons 52.3 21 0.00071 28.8 5.2 41 577-619 21-61 (82)
119 2p5v_A Transcriptional regulat 52.1 15 0.0005 33.9 4.8 49 578-628 8-56 (162)
120 4fx0_A Probable transcriptiona 51.8 17 0.00058 32.9 5.1 47 578-626 31-82 (148)
121 2xub_A DNA-directed RNA polyme 51.3 11 0.00037 42.4 4.5 134 590-772 29-162 (534)
122 1sd4_A Penicillinase repressor 51.2 9 0.00031 33.5 3.0 51 577-629 7-61 (126)
123 2qlz_A Transcription factor PF 51.1 15 0.00051 36.4 4.9 46 580-628 12-57 (232)
124 2v79_A DNA replication protein 50.0 11 0.00039 33.8 3.6 21 749-769 63-83 (135)
125 3f6o_A Probable transcriptiona 49.9 13 0.00046 32.2 4.0 48 579-629 17-64 (118)
126 2k4b_A Transcriptional regulat 49.9 11 0.00037 32.0 3.2 32 749-781 65-96 (99)
127 2g9w_A Conserved hypothetical 49.9 17 0.00059 32.4 4.8 50 578-629 7-61 (138)
128 1hsj_A Fusion protein consisti 49.8 12 0.00042 41.1 4.6 52 577-630 401-454 (487)
129 1tbx_A ORF F-93, hypothetical 49.3 6.1 0.00021 33.1 1.5 28 749-776 38-65 (99)
130 3u2r_A Regulatory protein MARR 49.3 6.2 0.00021 36.5 1.7 50 578-629 44-95 (168)
131 2yu3_A DNA-directed RNA polyme 48.7 18 0.00062 30.4 4.3 50 577-628 34-85 (95)
132 1p4x_A Staphylococcal accessor 48.4 15 0.00052 36.8 4.6 52 577-630 155-208 (250)
133 1r1t_A Transcriptional repress 48.2 21 0.00073 31.2 5.0 47 580-629 46-92 (122)
134 3mq0_A Transcriptional repress 48.1 13 0.00045 37.8 4.1 54 584-646 34-88 (275)
135 1mkm_A ICLR transcriptional re 47.5 23 0.00077 35.3 5.7 55 583-646 11-66 (249)
136 3i4p_A Transcriptional regulat 47.2 26 0.00087 32.3 5.7 45 581-627 4-48 (162)
137 2lkp_A Transcriptional regulat 47.1 20 0.00068 30.9 4.6 46 580-628 32-77 (119)
138 1okr_A MECI, methicillin resis 46.7 10 0.00035 32.9 2.7 51 577-629 7-61 (123)
139 3c57_A Two component transcrip 46.4 23 0.00078 29.4 4.7 41 577-619 27-67 (95)
140 1x3u_A Transcriptional regulat 46.3 28 0.00094 27.4 5.0 40 578-619 17-56 (79)
141 2l01_A Uncharacterized protein 46.0 27 0.00093 27.9 4.6 38 583-620 13-51 (77)
142 2pg4_A Uncharacterized protein 45.3 16 0.00055 30.2 3.6 45 581-627 16-62 (95)
143 3b73_A PHIH1 repressor-like pr 43.3 23 0.0008 30.6 4.3 50 578-629 11-62 (111)
144 1p4x_A Staphylococcal accessor 42.8 12 0.00042 37.5 2.8 52 577-630 31-84 (250)
145 1q1h_A TFE, transcription fact 41.4 21 0.00074 30.3 3.9 43 585-629 23-66 (110)
146 2zkz_A Transcriptional repress 41.0 21 0.00073 29.8 3.7 41 579-619 26-66 (99)
147 2lnb_A Z-DNA-binding protein 1 40.0 19 0.00063 28.8 2.8 36 584-619 23-59 (80)
148 2fu4_A Ferric uptake regulatio 39.8 17 0.00057 29.2 2.7 31 749-779 50-80 (83)
149 2g7u_A Transcriptional regulat 39.2 33 0.0011 34.3 5.4 54 583-646 17-71 (257)
150 2k4b_A Transcriptional regulat 39.2 6.4 0.00022 33.4 0.0 52 577-630 32-87 (99)
151 2ia2_A Putative transcriptiona 39.0 29 0.00098 34.9 4.9 54 584-647 25-79 (265)
152 2p7v_B Sigma-70, RNA polymeras 38.7 50 0.0017 25.1 5.3 42 578-619 6-50 (68)
153 2jt1_A PEFI protein; solution 37.9 11 0.00038 30.3 1.3 26 749-774 36-61 (77)
154 2o0y_A Transcriptional regulat 37.7 26 0.0009 35.1 4.4 54 584-646 27-81 (260)
155 2jpc_A SSRB; DNA binding prote 37.0 32 0.0011 25.5 3.8 35 583-619 4-38 (61)
156 2hzt_A Putative HTH-type trans 36.9 41 0.0014 28.4 4.9 46 581-629 15-61 (107)
157 3df8_A Possible HXLR family tr 36.9 39 0.0013 28.9 4.8 47 580-629 27-76 (111)
158 1uly_A Hypothetical protein PH 36.4 45 0.0015 31.8 5.6 49 578-629 18-66 (192)
159 3f6v_A Possible transcriptiona 36.3 24 0.00082 32.3 3.5 48 579-629 57-104 (151)
160 1qgp_A Protein (double strande 36.0 13 0.00043 29.9 1.3 28 749-776 43-70 (77)
161 2rnj_A Response regulator prot 35.7 24 0.00083 28.9 3.1 40 578-619 30-69 (91)
162 2vn2_A DNAD, chromosome replic 35.6 22 0.00075 31.5 3.0 23 749-771 63-85 (128)
163 1on2_A Transcriptional regulat 35.0 25 0.00087 31.2 3.4 41 587-629 15-55 (142)
164 1z7u_A Hypothetical protein EF 34.8 28 0.00096 29.8 3.5 47 580-629 22-69 (112)
165 2fbk_A Transcriptional regulat 34.8 10 0.00035 35.5 0.7 50 578-629 67-119 (181)
166 2x4h_A Hypothetical protein SS 34.7 40 0.0014 29.7 4.8 50 577-628 10-63 (139)
167 1tty_A Sigma-A, RNA polymerase 34.7 51 0.0017 26.6 5.0 40 579-618 20-62 (87)
168 4a0z_A Transcription factor FA 34.7 35 0.0012 32.5 4.5 40 581-620 13-52 (190)
169 1p4w_A RCSB; solution structur 34.3 38 0.0013 28.5 4.2 41 577-619 34-74 (99)
170 1sd4_A Penicillinase repressor 33.8 24 0.00083 30.6 3.0 31 749-780 40-70 (126)
171 1tc3_C Protein (TC3 transposas 33.8 49 0.0017 22.7 4.2 33 584-618 13-45 (51)
172 2p4w_A Transcriptional regulat 33.4 45 0.0015 32.1 5.1 48 579-629 14-61 (202)
173 2htj_A P fimbrial regulatory p 33.3 22 0.00074 28.5 2.4 22 749-770 26-47 (81)
174 3r0a_A Putative transcriptiona 33.3 16 0.00053 32.2 1.6 23 749-771 54-76 (123)
175 1ku3_A Sigma factor SIGA; heli 33.2 56 0.0019 25.2 4.8 40 579-618 12-54 (73)
176 1oks_A RNA polymerase alpha su 32.4 43 0.0015 24.4 3.4 45 441-485 4-48 (56)
177 2qvo_A Uncharacterized protein 31.7 26 0.00088 28.9 2.6 47 578-626 10-60 (95)
178 3t72_q RNA polymerase sigma fa 31.5 59 0.002 27.3 4.9 39 578-616 20-61 (99)
179 4a5n_A Uncharacterized HTH-typ 31.3 54 0.0019 29.1 4.9 46 581-629 27-73 (131)
180 2x48_A CAG38821; archeal virus 30.8 1.2E+02 0.004 21.7 6.0 24 593-616 30-53 (55)
181 2qlz_A Transcription factor PF 30.7 35 0.0012 33.6 3.9 44 583-629 168-211 (232)
182 1qbj_A Protein (double-strande 30.2 23 0.00079 28.7 2.0 28 749-776 39-66 (81)
183 2f2e_A PA1607; transcription f 29.9 60 0.0021 29.2 5.1 47 581-630 25-71 (146)
184 2fsw_A PG_0823 protein; alpha- 29.7 47 0.0016 28.0 4.1 44 583-629 28-72 (107)
185 3to7_A Histone acetyltransfera 29.6 42 0.0014 33.6 4.1 37 582-618 195-232 (276)
186 1okr_A MECI, methicillin resis 29.0 15 0.00052 31.8 0.8 31 749-780 40-70 (123)
187 2g9w_A Conserved hypothetical 28.4 43 0.0015 29.7 3.8 30 749-779 40-69 (138)
188 1yyv_A Putative transcriptiona 27.4 60 0.0021 28.7 4.5 48 579-629 34-82 (131)
189 3hug_A RNA polymerase sigma fa 27.1 81 0.0028 25.6 5.0 39 578-618 38-77 (92)
190 3cuo_A Uncharacterized HTH-typ 26.5 54 0.0018 26.7 3.8 28 749-776 50-77 (99)
191 1bia_A BIRA bifunctional prote 26.1 1E+02 0.0036 31.7 6.8 46 580-627 5-50 (321)
192 2o8x_A Probable RNA polymerase 25.9 92 0.0032 23.3 4.9 39 578-618 16-55 (70)
193 1r7j_A Conserved hypothetical 25.9 1.2E+02 0.0041 25.1 5.8 44 582-629 10-53 (95)
194 1nkl_A NK-lysin; saposin fold, 24.7 1.9E+02 0.0066 22.7 6.7 59 391-453 7-66 (78)
195 1svd_M Ribulose bisphosphate c 24.7 37 0.0012 29.3 2.3 18 750-767 23-40 (110)
196 1rbl_M Ribulose 1,5 bisphospha 24.6 35 0.0012 29.4 2.2 18 750-767 21-38 (109)
197 2ozu_A Histone acetyltransfera 23.6 57 0.0019 32.9 3.8 28 591-618 211-238 (284)
198 2frh_A SARA, staphylococcal ac 23.6 48 0.0016 28.9 3.0 22 749-770 65-86 (127)
199 3i4p_A Transcriptional regulat 22.3 41 0.0014 30.9 2.5 47 679-770 4-50 (162)
200 2ou2_A Histone acetyltransfera 21.9 71 0.0024 32.2 4.1 26 594-619 212-237 (280)
201 2dk5_A DNA-directed RNA polyme 21.8 75 0.0026 26.2 3.7 21 749-769 48-68 (91)
202 3f2g_A Alkylmercury lyase; MER 21.8 1.1E+02 0.0036 29.9 5.3 39 581-619 23-61 (220)
203 2pq8_A Probable histone acetyl 20.6 55 0.0019 33.0 3.0 37 583-619 196-233 (278)
204 3cuq_B Vacuolar protein-sortin 20.4 2.1E+02 0.0073 27.6 7.2 50 578-629 152-201 (218)
205 1z6r_A MLC protein; transcript 20.2 1.3E+02 0.0043 32.1 6.2 65 582-648 18-85 (406)
206 1j5y_A Transcriptional regulat 20.2 91 0.0031 29.2 4.5 40 581-620 22-62 (187)
207 3dp7_A SAM-dependent methyltra 20.2 1E+02 0.0035 32.2 5.4 51 585-645 40-91 (363)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=4.3e-131 Score=1172.70 Aligned_cols=707 Identities=32% Similarity=0.584 Sum_probs=652.9
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcC-----------------------CCCCchHHHHH
Q 003986 11 LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQK-----------------------PPHDYSQQLYD 67 (781)
Q Consensus 11 f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vY~lc~~~-----------------------~~~~~~e~LY~ 67 (781)
|+++|+.|++||++|. ++ .+++..+||++|++||++|+++ +|..+|+.||+
T Consensus 1 f~~~W~~L~~ai~~I~---~~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~ 74 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVY---TR---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK 74 (760)
T ss_dssp CHHHHHHHHHHHHHHT---TC---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred ChhhHHHHHHHHHHHH---hc---CCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHH
Confidence 6899999999999964 33 2588999999999999999986 13447899999
Q ss_pred HHHHHHHHHHHhcccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCC------CCcHHHHHHHHHHH
Q 003986 68 KYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS------LPPLNEVGLTCFRD 141 (781)
Q Consensus 68 ~l~~~l~~~l~~~v~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLDr~yv~~~~------~~~i~~l~l~lf~~ 141 (781)
++++.+.+|+...+. .+....++.+|..|..+|.+|+.++.+|+++|+||||+|+++.+ .++|+++|+.+||+
T Consensus 75 ~l~~~l~~~l~~~~~-~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~ 153 (760)
T 1ldj_A 75 RLKEFLKNYLTNLLK-DGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD 153 (760)
T ss_dssp HHHHHHHHHHHHHHH-TTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHH-HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHH
Confidence 999999999987543 34445678899999999999999999999999999999998875 78999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHhcCC---------cccccHHHhHHHHHHHHHHHHHHHHH
Q 003986 142 LVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMG---------QMDYYENDFETAMLKDTAAYYSRKAS 212 (781)
Q Consensus 142 ~v~~~l~~~l~~~ll~~I~~~R~g~~i~~~~lk~~i~~l~~l~~~---------~~~~Y~~~FE~~~L~~t~~yY~~~s~ 212 (781)
+||.+++++++++++++|+++|.|+.+|+.+|+++++||+.+|.+ .+.+|.+.||++||++|.+||+.+|+
T Consensus 154 ~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~ 233 (760)
T 1ldj_A 154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233 (760)
T ss_dssp HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999743 36899999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHccccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHhHHHHHHh
Q 003986 213 NWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRL 292 (781)
Q Consensus 213 ~~l~~~~~~eYl~~v~~~l~eE~~r~~~~l~~~t~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L 292 (781)
.|++++++++||++|+.++++|.+||+.||+++|.++|.++|+++||.+|.+.|+ +|+..||++++.+||++||+|
T Consensus 234 ~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L 309 (760)
T 1ldj_A 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNL 309 (760)
T ss_dssp HHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999885 589999999999999999999
Q ss_pred hccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 003986 293 FSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKS 372 (781)
Q Consensus 293 ~~~~~~~l~~l~~~~~~~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~I~~l~~l~~~~~~li~~~F~~~~~f~~~ 372 (781)
|+++++|++.|+..|++||++.|.+++.+..+. ...++..||+.|+++|++|+.++..||++|+.|..+
T Consensus 310 ~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~-----------~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~a 378 (760)
T 1ldj_A 310 VSRIQDGLGELKKLLETHIHNQGLAAIEKCGEA-----------ALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAA 378 (760)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTS-----------GGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHH
T ss_pred hCcCcchHHHHHHHHHHHHHHHHHHHHHHhhcc-----------cccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999999999999999999764311 124688999999999999999999999999999999
Q ss_pred HHHHHHHHhccC------CCCCchHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHH
Q 003986 373 LKEAFEVFCNKG------VAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARR 446 (781)
Q Consensus 373 l~~af~~~lN~~------~~~~~~~e~La~y~D~~lk~~~~~~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~LakR 446 (781)
+++||+.|+|.+ .+..++||+||+|||.+||++. ++.++++++..|++++.||+|+++||+|+.+|+++||+|
T Consensus 379 l~~af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakR 457 (760)
T 1ldj_A 379 LDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKR 457 (760)
T ss_dssp HHHHHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccccccccccHHHHHHHhHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999986 2236899999999999999875 456789999999999999999999999999999999999
Q ss_pred hcCCCCCChHHHHHHHHHHHHHhCCchhHhHHHHHHHHhHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCC
Q 003986 447 LLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSF 526 (781)
Q Consensus 447 LL~~~s~~~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~ 526 (781)
||.+++.+.+.|+.||++||.+||.+||++|++||+|+..|++++..|++++.++ ...+++|+|.|||+++||..+..
T Consensus 458 LL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~ 535 (760)
T 1ldj_A 458 LVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSC 535 (760)
T ss_dssp HHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCS
T ss_pred hcCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCeeEEecCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999987651 22478999999999999998888
Q ss_pred CccCcHHHHHHHHHHHHHHhhcCCCceeEeecCcceEEEEeEecCeeEEEEEcHHHHHHHHhHcCCCCcCHHHHHHHhCC
Q 003986 527 DLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNL 606 (781)
Q Consensus 527 ~~~lP~~l~~~~~~f~~~Y~~k~~~RkL~w~~~l~~~~i~~~~~~~~~~l~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i 606 (781)
++.+|++|+.+++.|++||..+|+||+|+|.|++|+|+|+++|++++++++||++||+||++||+.+++|+++|++.||+
T Consensus 536 ~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i 615 (760)
T 1ldj_A 536 TFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQI 615 (760)
T ss_dssp CCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCC
T ss_pred CCcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhHhhhccccccccCC-----CCCCCCCCCeEEEccCCCCCceeEEecCCCch----hhhhhHHhHHHhhhh
Q 003986 607 SDDDVVRLLHSLSCAKYKILNKEP-----NTKTISPTDHFEFNSKFTDKMRRIKIPLPPVD----EKKKVIEDVDKDRRY 677 (781)
Q Consensus 607 ~~~~l~~~L~sL~~~k~kiL~~~~-----~~~~i~~~~~f~lN~~F~~~~~~i~i~~~~~~----e~~~~~~~v~~~R~~ 677 (781)
++++++++|.+|+ +.+||.+.| +++.+.+++.|.+|.+|++++.||+||.+... |.+.+.+.+++||++
T Consensus 616 ~~~~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~ 693 (760)
T 1ldj_A 616 KMDILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKL 693 (760)
T ss_dssp CHHHHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHh
Confidence 9999999999997 678998554 77889999999999999999999999866432 344567889999999
Q ss_pred hhcceeeeecccccccChHHHHHHHHHHhccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhcCCCChHHHHHH
Q 003986 678 AIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKVHNTLFSFLFFFFVFVCESFVFLNLTTLALNEMLILQPDFKAIKKR 757 (781)
Q Consensus 678 ~I~A~IVRiMK~~k~~~~~~L~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~ 757 (781)
.|+||||||||+||+|+|++|+.+|+++++++|+ |++.+||+|
T Consensus 694 ~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~-------------------------------------p~~~~IKk~ 736 (760)
T 1ldj_A 694 LIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFK-------------------------------------PRVPVIKKC 736 (760)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCC-------------------------------------CCHHHHHHH
T ss_pred HheeeehhhhhccCCCcHHHHHHHHHHHHhccCC-------------------------------------CCHHHHHHH
Confidence 9999999999999999999999999999999999 999999999
Q ss_pred HHHhhhcccccccCCCCCcceecC
Q 003986 758 IEDLITRDYLERDKSNPNMFRYLA 781 (781)
Q Consensus 758 ie~Li~~eyl~r~~~~~~~~~Yia 781 (781)
||.||+||||+||++|+++|+|+|
T Consensus 737 Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 737 IDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHTTSEEECSSSTTEEEECC
T ss_pred HHHHhhccceeeCCCCCcceeeCC
Confidence 999999999999999999999998
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=2.3e-128 Score=1149.22 Aligned_cols=695 Identities=35% Similarity=0.644 Sum_probs=649.0
Q ss_pred CCCHHHhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhcccchhhc
Q 003986 8 TIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIRE 87 (781)
Q Consensus 8 ~~~f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vY~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~v~~~l~~ 87 (781)
..+|+++|..|++||+.| +++++. +++ |+++|+.||++|+++ +|+.||+++++.+.+|+...+ +.+..
T Consensus 56 ~~~~e~~W~~L~~ai~~I---~~~~~~-~~s---~e~LY~~vy~lc~~k----~~~~LY~~l~~~~~~~l~~~~-~~l~~ 123 (759)
T 2hye_C 56 DNYTQDTWRKLHEAVRAV---QSSTSI-RYN---LEELYQAVENLCSHK----VSPMLYKQLRQACEDHVQAQI-LPFRE 123 (759)
T ss_dssp CCTTTTHHHHHHHHHHTT---STTCCC-SSC---HHHHHHHHHHHCCTT----THHHHHHHHHHHHHHHHHHHH-HHHTS
T ss_pred cchHHHHHHHHHHHHHHH---HhCCCC-CCC---HHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 356799999999999985 555543 355 999999999999998 799999999999999998753 34433
Q ss_pred --cCcHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCC-CCcHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHH
Q 003986 88 --KHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLIDQE 162 (781)
Q Consensus 88 --~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLDr~yv~~~~-~~~i~~l~l~lf~~~v~~~--l~~~l~~~ll~~I~~~ 162 (781)
.+++.||..|..+|.+|+.++.+|+++|+||||+|+.+++ .++|+++|+.+|+++|+.+ +++++.++++++|+++
T Consensus 124 ~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~e 203 (759)
T 2hye_C 124 DSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERE 203 (759)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 2345899999999999999999999999999999999876 7899999999999999996 9999999999999999
Q ss_pred hcCCccCHHHHHHHHHHHHHhcCCcccccHHHhHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHcccc
Q 003986 163 REGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYL 242 (781)
Q Consensus 163 R~g~~i~~~~lk~~i~~l~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~eYl~~v~~~l~eE~~r~~~~l 242 (781)
|+|+.+|+.+++++++||+.| ++|.+.||++||++|.+||+.+++.|++++++++|+++|+.++++|.+||..||
T Consensus 204 R~Ge~id~~llk~vi~ml~~L-----~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL 278 (759)
T 2hye_C 204 RSGEAVDRSLLRSLLGMLSDL-----QVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYL 278 (759)
T ss_dssp TTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTS
T ss_pred hcCCCCcHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987 589999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHhHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhH
Q 003986 243 HSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA 322 (781)
Q Consensus 243 ~~~t~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~I~~~g~~i~~~~ 322 (781)
+++|.++|.++|+++||.+|++.|++ +|+..||.+++.++|++||+|+++++++++.++..|++||++.|.+++.+.
T Consensus 279 ~~~t~~~l~~~~~~~Li~~~~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~ 355 (759)
T 2hye_C 279 DHSTQKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINP 355 (759)
T ss_dssp CTTTHHHHHHHHHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHhcCc
Confidence 99999999999999999999999986 489999999999999999999999999999999999999999999998542
Q ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHH
Q 003986 323 EDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNIL 402 (781)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~I~~l~~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~~~~~~~~e~La~y~D~~l 402 (781)
. .+..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+. .++||+||+|||.+|
T Consensus 356 ~----------------~~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~--~~~~E~la~y~D~~L 417 (759)
T 2hye_C 356 E----------------KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRP--NKPAELIAKHVDSKL 417 (759)
T ss_dssp G----------------GTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHH
T ss_pred c----------------cHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCC--CchHHHHHHHHHHHh
Confidence 1 2457999999999999999999999999999999999999999863 589999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCchhHhHHHHHH
Q 003986 403 KKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVT 482 (781)
Q Consensus 403 k~~~~~~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~LakRLL~~~s~~~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~ 482 (781)
|+|. ++.+++|++..|++++.||+|+++||+|+.+|+++||+|||.+++.+.|.|+.||++||.+||.+||++|++||+
T Consensus 418 k~~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~ 496 (759)
T 2hye_C 418 RAGN-KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFK 496 (759)
T ss_dssp SSCG-GGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHH
T ss_pred ccCC-CCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 9864 456788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCccCcHHHHHHHHHHHHHHhhcCCCceeEeecCcce
Q 003986 483 DLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGT 562 (781)
Q Consensus 483 D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~k~~~RkL~w~~~l~~ 562 (781)
|+..|++++..|++++.+.+ ...+++|+|.|||+++||.++..++.+|++|+.+++.|++||..+|+||+|+|.+++|+
T Consensus 497 Di~~S~~l~~~f~~~~~~~~-~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~ 575 (759)
T 2hye_C 497 DMELSKDIMVHFKQHMQNQS-DSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGH 575 (759)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCE
T ss_pred HHHHHHHHHHHHHHHHhccc-CCCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCc
Confidence 99999999999999876432 12468999999999999999888899999999999999999999999999999999999
Q ss_pred EEEEeEecCeeEEEEEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEE
Q 003986 563 CNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFE 642 (781)
Q Consensus 563 ~~i~~~~~~~~~~l~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~ 642 (781)
|+|+++|++++++++||++||+||++||+.+++|++||++.||+++++++++|++|+++|.+||.+.|+++++.+++.|.
T Consensus 576 ~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~ 655 (759)
T 2hye_C 576 AVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFI 655 (759)
T ss_dssp EEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEE
T ss_pred EEEEEEeCCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999987899999999999999999999
Q ss_pred EccCCCCCceeEEecCCCc----hhhhhhHHhHHHhhhhhhcceeeeecccccccChHHHHHHHHHHhccccccccccch
Q 003986 643 FNSKFTDKMRRIKIPLPPV----DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKVHNTLFS 718 (781)
Q Consensus 643 lN~~F~~~~~~i~i~~~~~----~e~~~~~~~v~~~R~~~I~A~IVRiMK~~k~~~~~~L~~~v~~~l~~~f~~~~~~~~ 718 (781)
+|.+|+++++||+|+.++. +|.+.+.+.+++||++.||||||||||+||+|+|++|+.+|+++++ |+
T Consensus 656 lN~~f~~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~------- 726 (759)
T 2hye_C 656 FNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FP------- 726 (759)
T ss_dssp ECCCCCCSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SC-------
T ss_pred eeccccCCceEEEeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC--CC-------
Confidence 9999999999999986543 3455677889999999999999999999999999999999999997 99
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhcCCCChHHHHHHHHHhhhcccccccCCCCCcceecC
Q 003986 719 FLFFFFVFVCESFVFLNLTTLALNEMLILQPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 781 (781)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~ie~Li~~eyl~r~~~~~~~~~Yia 781 (781)
|++.+||+|||.||+||||+||++|+++|+|+|
T Consensus 727 ------------------------------p~~~~IKk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 727 ------------------------------VKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred ------------------------------CCHHHHHHHHHHHhcccceecCCCCCCeeEecC
Confidence 999999999999999999999999999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=9.3e-78 Score=659.03 Aligned_cols=357 Identities=32% Similarity=0.493 Sum_probs=325.4
Q ss_pred CCchHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 003986 387 GSSSAELLATFCDNILKKGG-SEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKL 465 (781)
Q Consensus 387 ~~~~~e~La~y~D~~lk~~~-~~~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~LakRLL~~~s~~~~~E~~~i~~L 465 (781)
..+.||+||+|||.+||++. +++.++++++..|++++.||+|+++||+|+.+|+++||+|||.+++.+.|.|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 35789999999999999863 24568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC--chhHhHHHHHHHHhHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCC-CCCccCcHHHHHHHHHHH
Q 003986 466 KQQCGG--QFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYK-SFDLNLPAEMVKCVEVFR 542 (781)
Q Consensus 466 k~~~G~--~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~-~~~~~lP~~l~~~~~~f~ 542 (781)
| +||. +||++|++||+|+..|++++..|++++.+.+....+++|+|.|||+++||..+ ..++.+|++|+.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHH
Confidence 9 9997 89999999999999999999999998765432234689999999999999874 568999999999999999
Q ss_pred HHHhhcCCCceeEeecCcceEEEEeEecCeeEEEEEcHHHHHHHHhHcCC--CCcCHHHHHHHhCCCHHHHHHHHhHhhh
Q 003986 543 EFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSC 620 (781)
Q Consensus 543 ~~Y~~k~~~RkL~w~~~l~~~~i~~~~~~~~~~l~~s~~Q~~ILllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 620 (781)
+||..+|+||+|+|.|++|+|+|++++++++++++||++||+||++||+. +.+|++||++.||+++++|+++|++|++
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~ 241 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred HHHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999985 7999999999999999999999999986
Q ss_pred c---cccccccCCCC---CCCCCCCeEEEccCCCCC-----ceeEEecCCC------chhhhhhHHhHHHhhhhhhccee
Q 003986 621 A---KYKILNKEPNT---KTISPTDHFEFNSKFTDK-----MRRIKIPLPP------VDEKKKVIEDVDKDRRYAIDASI 683 (781)
Q Consensus 621 ~---k~kiL~~~~~~---~~i~~~~~f~lN~~F~~~-----~~~i~i~~~~------~~e~~~~~~~v~~~R~~~I~A~I 683 (781)
. |++||.+.|.+ +++.+++.|.+|.+|++. .++++|+.++ ..+.+++.+.+++||++.|||||
T Consensus 242 ~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaI 321 (382)
T 3dpl_C 242 FPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAI 321 (382)
T ss_dssp CTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEEE
Confidence 3 56899988753 568899999999999872 3677776542 12445677889999999999999
Q ss_pred eeecccccccChHHHHHHHHHHhccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhcCCCChHHHHHHHHHhhh
Q 003986 684 VRIMKSRKVLGHQQLVLECVEQLGRMFKVHNTLFSFLFFFFVFVCESFVFLNLTTLALNEMLILQPDFKAIKKRIEDLIT 763 (781)
Q Consensus 684 VRiMK~~k~~~~~~L~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~ie~Li~ 763 (781)
|||||+||+|+|++|+.+|+++++++|+ |++.+||+|||+|||
T Consensus 322 VRIMK~rK~l~h~~Lv~ev~~ql~~rF~-------------------------------------p~~~~IKk~Ie~LIe 364 (382)
T 3dpl_C 322 IQIMKMRKKISNAQLQTELVEILKNMFL-------------------------------------PQKKMIKEQIEWLIE 364 (382)
T ss_dssp HHHHTTSSEECHHHHHHHHHHHTTTTCC-------------------------------------CCHHHHHHHHHHHHH
T ss_pred ehhhhccCcccHHHHHHHHHHHHHhcCC-------------------------------------CCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 999999999999999
Q ss_pred cccccccCCCCCcceecC
Q 003986 764 RDYLERDKSNPNMFRYLA 781 (781)
Q Consensus 764 ~eyl~r~~~~~~~~~Yia 781 (781)
||||+||++|+++|+|+|
T Consensus 365 reYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 365 HKYIRRDESDINTFIYMA 382 (382)
T ss_dssp TTSEEEETTEEEEEEECC
T ss_pred hhhhccCCCCCCeEEEcC
Confidence 999999999999999998
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.1e-65 Score=564.92 Aligned_cols=368 Identities=26% Similarity=0.488 Sum_probs=329.3
Q ss_pred CCHHHhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhcccchhhcc
Q 003986 9 IDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREK 88 (781)
Q Consensus 9 ~~f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vY~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~v~~~l~~~ 88 (781)
.+|+++|+.|++||++| +++.+. ++| ||++|+.||++|+++ +|++||+++++.+.+|+...+.+.+...
T Consensus 28 ~~~~~~W~~L~~ai~~I---~~~~~~-~~s---~eeLY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~l~~~ 96 (410)
T 4ap2_B 28 KYVNSIWDLLKNAIQEI---QRKNNS-GLS---FEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVREDVLNS 96 (410)
T ss_dssp HHHHHHHHHHHHHHHHH---HTTCCT-TCC---HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHH---HhcCCC-CCC---HHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999986 455543 355 999999999999998 8999999999999999986667777666
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCCCCcHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhcCC
Q 003986 89 HDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQEREGE 166 (781)
Q Consensus 89 ~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLDr~yv~~~~~~~i~~l~l~lf~~~v~~--~l~~~l~~~ll~~I~~~R~g~ 166 (781)
.++.||+.|..+|.+|+.++.+|+++|+||||+|+++++.++|+++|+.+||++||. +++++++++++.+|+++|.|+
T Consensus 97 ~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge 176 (410)
T 4ap2_B 97 LNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGE 176 (410)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 667899999999999999999999999999999999999999999999999999997 699999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhcCCcccccHHHhHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHccccCCCc
Q 003986 167 QIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSS 246 (781)
Q Consensus 167 ~i~~~~lk~~i~~l~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~eYl~~v~~~l~eE~~r~~~~l~~~t 246 (781)
.+|+.+|+++++||+.+|.+.+.+|.+.||++||++|.+||+.+++.|+.++++++||++|+.++++|.+||+.||+++|
T Consensus 177 ~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~sT 256 (410)
T 4ap2_B 177 VVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKST 256 (410)
T ss_dssp CCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHhHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHh
Q 003986 247 EPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAA 326 (781)
Q Consensus 247 ~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~I~~~g~~i~~~~~~~~ 326 (781)
.++|.++|+++||.+|++.|++++++|+..||++++.++|++||+||+++++|++.|+..|++||++.|.+++.+...
T Consensus 257 ~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv~~~~~-- 334 (410)
T 4ap2_B 257 EEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGE-- 334 (410)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcccc--
Confidence 999999999999999999999888899999999999999999999999999999999999999999999999977532
Q ss_pred hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHh
Q 003986 327 SNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILK 403 (781)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~I~~l~~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~~~~~~~~e~La~y~D~~lk 403 (781)
...|..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+. +.||+||+|||..-.
T Consensus 335 -----------~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~---~spElla~y~D~~~~ 397 (410)
T 4ap2_B 335 -----------GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS---RSPEYLAENLYFQSH 397 (410)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC-------------------
T ss_pred -----------ccChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC---CCHHHHHHHccCccc
Confidence 235889999999999999999999999999999999999999999984 678999999998543
No 5
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=6.5e-63 Score=541.42 Aligned_cols=354 Identities=25% Similarity=0.510 Sum_probs=281.6
Q ss_pred CCCCHHHhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhcccchhh
Q 003986 7 KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIR 86 (781)
Q Consensus 7 ~~~~f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vY~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~v~~~l~ 86 (781)
++.+|+++|+.|++||++| +++.+. ++| ||++|++||++|+++ +|++||+++++.+.+|+...+.+.+.
T Consensus 9 ~~~~~~~~W~~L~~ai~~I---~~~~~~-~~s---~e~LY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~~~ 77 (364)
T 4eoz_B 9 DEKYVNSIWDLLKNAIQEI---QRKNNS-GLS---FEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVREDVL 77 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HTTCGG-GCC---HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHH---HhcCCC-CCC---HHHHHHHHHHHHhhh----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999986 445443 355 999999999999998 89999999999999999866677776
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCCCCcHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhc
Q 003986 87 EKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQERE 164 (781)
Q Consensus 87 ~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLDr~yv~~~~~~~i~~l~l~lf~~~v~~--~l~~~l~~~ll~~I~~~R~ 164 (781)
...++.||+.+..+|.+|+.++.+|+++|+||||+|+++++.++|+++|+.+||++|+. ++++++.++++++|+++|.
T Consensus 78 ~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~ 157 (364)
T 4eoz_B 78 NSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERK 157 (364)
T ss_dssp TTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhC
Confidence 66667799999999999999999999999999999999999999999999999999997 7999999999999999999
Q ss_pred CCccCHHHHHHHHHHHHHhcCCcccccHHHhHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHccccCC
Q 003986 165 GEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHS 244 (781)
Q Consensus 165 g~~i~~~~lk~~i~~l~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~eYl~~v~~~l~eE~~r~~~~l~~ 244 (781)
|+.+|+.+++++++||+.+|.+.+.+|.+.||++||++|.+||+.+|+.|+.++++++||++|+.++++|.+||+.||++
T Consensus 158 Ge~id~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~ 237 (364)
T 4eoz_B 158 GEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDK 237 (364)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred CCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999887889999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHhHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHH
Q 003986 245 SSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAED 324 (781)
Q Consensus 245 ~t~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~I~~~g~~i~~~~~~ 324 (781)
+|.++|.++|+++||.+|.+.|++++++|+..||++++.++|++||+||+++++|++.++..|++||++.|.+++.+...
T Consensus 238 ~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~ 317 (364)
T 4eoz_B 238 STEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGE 317 (364)
T ss_dssp GGHHHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC---------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999976532
Q ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Q 003986 325 AASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKG 384 (781)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~I~~l~~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~ 384 (781)
..+|..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 318 -------------~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 318 -------------GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp ------------------------------------------------------------
T ss_pred -------------cCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 23588999999999999999999999999999999999999999974
No 6
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=4.1e-60 Score=523.77 Aligned_cols=357 Identities=20% Similarity=0.461 Sum_probs=323.4
Q ss_pred CCCCCCHHHhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhcccch
Q 003986 5 ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPS 84 (781)
Q Consensus 5 ~~~~~~f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vY~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~v~~~ 84 (781)
++++.+|+++|+.|++||++|.. + .+++..+||++|++||++|++++ .+|++||+++++.+.+|+...+.+.
T Consensus 9 ~~~~~~~e~~W~~L~~ai~~I~~---~---~~~~~~s~e~LY~~vy~lc~~~~--~~~~~LY~~l~~~~~~~l~~~~~~~ 80 (391)
T 2wzk_A 9 NKGSLQFEDKWDFMHPIVLKLLR---Q---ESVTKQQWFDLFSDVHAVCLWDD--KGSSKIHQALKEDILEFIKQAQARV 80 (391)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHH---T---CCCCHHHHHHHHHHHHHHHHHCT--THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHHHh---C---CCCChHHHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999753 3 25888899999999999999852 2799999999999999998755433
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcC--------CCCcHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003986 85 IREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARR--------SLPPLNEVGLTCFRDLVYTELNGKVRDAVI 156 (781)
Q Consensus 85 l~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLDr~yv~~~--------~~~~i~~l~l~lf~~~v~~~l~~~l~~~ll 156 (781)
....+++.+|..|..+|.+|+.++.+|+++|+||||+|+.+. +.++|+++|+.+||++||.+++++++++++
T Consensus 81 ~~~~~~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~~~ll 160 (391)
T 2wzk_A 81 LSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAM 160 (391)
T ss_dssp HTCCSHHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345789999999999999999999999999999999653 356999999999999999999999999999
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHHHHhcCC---cccccHHHhHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 003986 157 TLIDQEREGEQIDRALLKNVLDIFVEIGMG---QMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKR 233 (781)
Q Consensus 157 ~~I~~~R~g~~i~~~~lk~~i~~l~~l~~~---~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~eYl~~v~~~l~e 233 (781)
.+|+++|.|+.+|+.+++++++||+.+|.+ .+.+|.+.||++||++|.+||+.+|+.|+.++++++||++|+.+|++
T Consensus 161 ~lI~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~e 240 (391)
T 2wzk_A 161 KLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 240 (391)
T ss_dssp HHHHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999853 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHccccC----CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHhHHHHHHhhccCCCChhhHHHHHHH
Q 003986 234 EKDRVSHYLH----SSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQ 309 (781)
Q Consensus 234 E~~r~~~~l~----~~t~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~ 309 (781)
|.+||+.||+ ++|.++|.++|+++||.+|.+.|++ |+..||++++.+||++||+||+++++|++.|+..|++
T Consensus 241 E~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~----~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~ 316 (391)
T 2wzk_A 241 EEKRALRYLETRRECNSVEALMECCVNALVTSFKETILA----ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEE 316 (391)
T ss_dssp HHHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHHT----THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHH
T ss_pred HHHHHHHHcCCcCCcchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHH
Confidence 9999999999 9999999999999999999999984 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Q 003986 310 HVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKG 384 (781)
Q Consensus 310 ~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~I~~l~~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~ 384 (781)
||++.|.+++....+. ...+|..||+.|+++|++|+.++.+||++|+.|.+++++||+.|+|.+
T Consensus 317 ~I~~~G~~~v~~~~~~-----------~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~ 380 (391)
T 2wzk_A 317 HIISAGLADMVAAAET-----------ITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDA 380 (391)
T ss_dssp HHHHHHHHHHHHHGGG-----------TTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc-----------ccCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc
Confidence 9999999997543211 134688999999999999999999999999999999999999999976
No 7
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=9.7e-60 Score=514.32 Aligned_cols=344 Identities=25% Similarity=0.530 Sum_probs=314.0
Q ss_pred CCCCHHHhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhcccchhh
Q 003986 7 KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIR 86 (781)
Q Consensus 7 ~~~~f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vY~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~v~~~l~ 86 (781)
+..+|+++|+.|++||.+| +++.+. ++| ||++|++||++|+++ +|++||+++++.+.+|+...+.+...
T Consensus 6 ~~~~~~~~W~~L~~ai~~I---~~~~~~-~~s---~eeLY~~vy~lc~~~----~g~~LY~~l~~~~~~~l~~~~~~~~~ 74 (354)
T 4a64_A 6 PENYTDETWQKLKEAVEAI---QNSTSI-KYN---LEELYQAVENLCSYK----ISANLYKQLRQICEDHIKAQIHQFRE 74 (354)
T ss_dssp CSSSTTHHHHHHHHHHHHH---HTTCCC-CSC---HHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHTTGGGGC
T ss_pred CHHHHHHHHHHHHHHHHHH---HhCCCC-CCC---HHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999996 445543 355 999999999999998 89999999999999999876554433
Q ss_pred cc-CcHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCC-CCcHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHH
Q 003986 87 EK-HDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQE 162 (781)
Q Consensus 87 ~~-~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLDr~yv~~~~-~~~i~~l~l~lf~~~v~~--~l~~~l~~~ll~~I~~~ 162 (781)
.. +++.||+.+..+|.+|+.++.+|+++|+||||+|+++++ .++|+++|+.+|+++|+. ++++++.++++++|+++
T Consensus 75 ~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~e 154 (354)
T 4a64_A 75 DSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERE 154 (354)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 32 346899999999999999999999999999999999876 799999999999999997 69999999999999999
Q ss_pred hcCCccCHHHHHHHHHHHHHhcCCcccccHHHhHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHcccc
Q 003986 163 REGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYL 242 (781)
Q Consensus 163 R~g~~i~~~~lk~~i~~l~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~eYl~~v~~~l~eE~~r~~~~l 242 (781)
|.|+.+|+.+|+++++|+..+ ++|.+.||++||++|.+||+.+|+.|+.++++++||++|+.++++|.+||+.||
T Consensus 155 R~Ge~id~~lik~~i~ml~~L-----~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL 229 (354)
T 4a64_A 155 RNGEAIDRSLLRSLLSMLSDL-----QIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYL 229 (354)
T ss_dssp HTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hCCCCCCHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999986 589999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHhHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhH
Q 003986 243 HSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA 322 (781)
Q Consensus 243 ~~~t~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~I~~~g~~i~~~~ 322 (781)
+++|.++|.++|+++||.+|.+.|++ +|+..||++++.++|++||+|++++++|++.++..|++||++.|.+++.+.
T Consensus 230 ~~~T~~~l~~~~e~~LI~~h~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~ 306 (354)
T 4a64_A 230 DQTTQKSLIATVEKQLLGEHLTAILQ---KGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINP 306 (354)
T ss_dssp CGGGHHHHHHHHHHHHTGGGHHHHHH---HHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999883 799999999999999999999999999999999999999999999998542
Q ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCC
Q 003986 323 EDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV 385 (781)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~I~~l~~l~~~~~~li~~~F~~~~~f~~~l~~af~~~lN~~~ 385 (781)
..+..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+.
T Consensus 307 ----------------~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 307 ----------------EKDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp ----------------CSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred ----------------cchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 13567999999999999999999999999999999999999999863
No 8
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.91 E-value=2e-25 Score=187.74 Aligned_cols=82 Identities=33% Similarity=0.653 Sum_probs=79.1
Q ss_pred hhhhhhHHhHHHhhhhhhcceeeeecccccccChHHHHHHHHHHhccccccccccchhhhhhhhhhhhhhhhhhhhhhhh
Q 003986 662 DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKVHNTLFSFLFFFFVFVCESFVFLNLTTLAL 741 (781)
Q Consensus 662 ~e~~~~~~~v~~~R~~~I~A~IVRiMK~~k~~~~~~L~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (781)
+|.+++.+.+++||++.||||||||||++|+|+|++|+.+|+++++++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~------------------------------ 56 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFN------------------------------ 56 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCC------------------------------
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCC------------------------------
Confidence 46677889999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCChHHHHHHHHHhhhcccccccCCCCCcceecC
Q 003986 742 NEMLILQPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 781 (781)
Q Consensus 742 ~~~~~~~~~~~~ik~~ie~Li~~eyl~r~~~~~~~~~Yia 781 (781)
|++.+||+|||.||+||||+|+++| ++|+|+|
T Consensus 57 -------p~~~~IKk~IE~LIekeYleR~~~~-~~y~YlA 88 (88)
T 3o2p_E 57 -------AKVSMVKRAIDSLIQKGYLQRGDDG-ESYAYLA 88 (88)
T ss_dssp -------CCHHHHHHHHHHHHHTTSEEECTTS-SEEEECC
T ss_pred -------CCHHHHHHHHHHHHhhhHHhcCCCC-CeEEeeC
Confidence 9999999999999999999999998 9999998
No 9
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.91 E-value=9.6e-26 Score=185.16 Aligned_cols=75 Identities=49% Similarity=0.750 Sum_probs=73.4
Q ss_pred hHHHhhhhhhcceeeeecccccccChHHHHHHHHHHhccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhcCCC
Q 003986 670 DVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKVHNTLFSFLFFFFVFVCESFVFLNLTTLALNEMLILQP 749 (781)
Q Consensus 670 ~v~~~R~~~I~A~IVRiMK~~k~~~~~~L~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (781)
.+++||++.|+||||||||++|+|+|++|+.+|+++++++|+ |
T Consensus 3 ~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~-------------------------------------p 45 (77)
T 3tdu_C 3 NIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFK-------------------------------------P 45 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCC-------------------------------------C
T ss_pred chhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCC-------------------------------------C
Confidence 578999999999999999999999999999999999999999 9
Q ss_pred ChHHHHHHHHHhhhcccccccCCCCCcceecC
Q 003986 750 DFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 781 (781)
Q Consensus 750 ~~~~ik~~ie~Li~~eyl~r~~~~~~~~~Yia 781 (781)
++.+||+|||.|||||||+|+++|+++|+|+|
T Consensus 46 ~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 46 RVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp CHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred CHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 99999999999999999999999999999998
No 10
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.90 E-value=2.4e-25 Score=189.33 Aligned_cols=82 Identities=48% Similarity=0.713 Sum_probs=77.2
Q ss_pred hhhhhHHhHHHhhhhhhcceeeeecccccccChHHHHHHHHHHhccccccccccchhhhhhhhhhhhhhhhhhhhhhhhh
Q 003986 663 EKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKVHNTLFSFLFFFFVFVCESFVFLNLTTLALN 742 (781)
Q Consensus 663 e~~~~~~~v~~~R~~~I~A~IVRiMK~~k~~~~~~L~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (781)
|.+.+.+.+++||++.||||||||||++|+|+|++|+.+|+++|+++|+
T Consensus 11 e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~------------------------------- 59 (92)
T 1iuy_A 11 ERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFL------------------------------- 59 (92)
T ss_dssp CCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCC-------------------------------
Confidence 4455677889999999999999999999999999999999999999999
Q ss_pred hhhcCCCChHHHHHHHHHhhhcccccccCCCCCcceecC
Q 003986 743 EMLILQPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 781 (781)
Q Consensus 743 ~~~~~~~~~~~ik~~ie~Li~~eyl~r~~~~~~~~~Yia 781 (781)
|++.+||+|||.||+||||+||++|+++|+|+|
T Consensus 60 ------p~~~~IKk~IE~LIereYleR~~~d~~~y~Y~A 92 (92)
T 1iuy_A 60 ------PSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 92 (92)
T ss_dssp ------CCHHHHHHHHHHHHHTTSEEECSSCSSEEEEC-
T ss_pred ------CCHHHHHHHHHHHhhhhhhhcCCCCCCeeEecC
Confidence 999999999999999999999999999999998
No 11
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=7.6e-25 Score=188.85 Aligned_cols=81 Identities=54% Similarity=0.801 Sum_probs=76.8
Q ss_pred hhhhhhHHhHHHhhhhhhcceeeeecccccccChHHHHHHHHHHhccccccccccchhhhhhhhhhhhhhhhhhhhhhhh
Q 003986 662 DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKVHNTLFSFLFFFFVFVCESFVFLNLTTLAL 741 (781)
Q Consensus 662 ~e~~~~~~~v~~~R~~~I~A~IVRiMK~~k~~~~~~L~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (781)
+|.+.+.+.+++||++.||||||||||++|+|+|++|+.+|+++++ |+
T Consensus 15 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~------------------------------ 62 (101)
T 2do7_A 15 EEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FP------------------------------ 62 (101)
T ss_dssp CCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC--CC------------------------------
Confidence 3455677889999999999999999999999999999999999998 99
Q ss_pred hhhhcCCCChHHHHHHHHHhhhcccccccCCCCCcceecC
Q 003986 742 NEMLILQPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 781 (781)
Q Consensus 742 ~~~~~~~~~~~~ik~~ie~Li~~eyl~r~~~~~~~~~Yia 781 (781)
|++.+||+|||.||+||||+||++|+++|+|+|
T Consensus 63 -------p~~~~IKk~IE~LIereYleR~~~d~~~y~YlA 95 (101)
T 2do7_A 63 -------VKPADLKKRIESLIDRDYMERDKENPNQYNYIA 95 (101)
T ss_dssp -------CCHHHHHHHHHHHHHTTSEEECSSCTTEEEECC
T ss_pred -------CCHHHHHHHHHHHhhhhHHhcCCCCCCeEEEec
Confidence 999999999999999999999999999999998
No 12
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=83.62 E-value=1 Score=37.76 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=42.9
Q ss_pred EEEEcHHHHHHHHhHcC--CCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccc
Q 003986 575 ELIVTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 627 (781)
Q Consensus 575 ~l~~s~~Q~~ILllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~ 627 (781)
...++..|..||....+ ++.++..||++.++++...+.++|..|.. -+++.
T Consensus 15 ~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~--kglIk 67 (91)
T 2dk5_A 15 MKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIK 67 (91)
T ss_dssp CCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEE
T ss_pred hcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEE
Confidence 34568899999988876 56899999999999999999999999974 35555
No 13
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=82.93 E-value=1.2 Score=36.11 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=38.5
Q ss_pred HHHHhHcCC------CCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCC
Q 003986 584 SALLLFNSS------DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKT 634 (781)
Q Consensus 584 ~ILllFn~~------~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~ 634 (781)
.||....+. .+.|+.||++.+|++...+.+.|..|. +.+.|.+.+.+..
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le--~kG~I~R~~ggr~ 62 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLH--DVGVLEKVNAGKG 62 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESCSSS
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEecCCCCC
Confidence 355555544 689999999999999999999999997 5578887765443
No 14
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=81.98 E-value=1.8 Score=36.22 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=41.9
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+..+..||..+.+++++|..||++.+|++...+.++|..|. +.+++...
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMR--DEGLIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 46788888888887789999999999999999999999997 45777654
No 15
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=80.81 E-value=1.9 Score=34.92 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=41.3
Q ss_pred HHHHHHhHcCCC---CcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEcc
Q 003986 582 QASALLLFNSSD---RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 645 (781)
Q Consensus 582 Q~~ILllFn~~~---~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~ 645 (781)
+..||.++.+.. .+|..||++.+|++...+.++|..|. +.+++...+. ..+.|.++.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~--~~G~I~~~g~-----~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEAG-----TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH--HHTSEEEECS-----SSCEEEECC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecCC-----CCCceEecC
Confidence 356666555554 89999999999999999999999996 4466665431 125566553
No 16
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=80.03 E-value=3.6 Score=33.25 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=35.4
Q ss_pred HHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 584 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 584 ~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
.||..+.+.+++|..||++.+|++...+.+.|..|.. .+++..
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~--~GlI~~ 46 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEK--AGMVQR 46 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 4566666667899999999999999999999999974 466764
No 17
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=79.50 E-value=3.8 Score=34.37 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=40.2
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
+.....||.++.+ +++|+.||++.+|++...+.++|..|. +.+++....
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~ 70 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLR--RDGLVTTRK 70 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEE
Confidence 3556677777776 789999999999999999999999997 457776553
No 18
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=79.26 E-value=0.88 Score=51.96 Aligned_cols=137 Identities=7% Similarity=0.033 Sum_probs=49.7
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhc---cccccccCCCCCCCCCCCeEEEccCCCCCceeEE
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCA---KYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIK 655 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~---k~kiL~~~~~~~~i~~~~~f~lN~~F~~~~~~i~ 655 (781)
+..+..||..+.++..+|..+|++.+|++...+++.|..|... ..+++... ++.|.++..........
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~--------g~~y~L~~~~~~~~~~~- 499 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH--------DGVWLLGNACREILRKV- 499 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE--------TTEEEECHHHHHHHTSC-
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe--------CCEEEECHHHHHHhccc-
Confidence 4577888888788889999999999999999999999999741 14566653 36788887642211000
Q ss_pred ecCCCchhhhhhHHhHHHhhhhhhcceeeeecccccccChHHHHHHHHHHhccccccccccchhhhhhhhhhhhhhhhhh
Q 003986 656 IPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKVHNTLFSFLFFFFVFVCESFVFLN 735 (781)
Q Consensus 656 i~~~~~~e~~~~~~~v~~~R~~~I~A~IVRiMK~~k~~~~~~L~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (781)
+ +.....-....-.....+..|+..++.++.++-.|+... +.
T Consensus 500 -~-----~~~~~~~~~~~~~~~~~~~~I~~~l~~~g~it~~di~~l--------~~------------------------ 541 (583)
T 3lmm_A 500 -E-----PSPFSPVRYLSTDQAELTNAAMLWLSEVGDLATSDLMAM--------CG------------------------ 541 (583)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -c-----cccccccccccCChhHHHHHHHHHHHHcCCcCHHHHHHH--------HC------------------------
Confidence 0 000000000000123456678999999999998888642 23
Q ss_pred hhhhhhhhhhcCCCChHHHHHHHHHhhhcccccccCCCCC
Q 003986 736 LTTLALNEMLILQPDFKAIKKRIEDLITRDYLERDKSNPN 775 (781)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~ik~~ie~Li~~eyl~r~~~~~~ 775 (781)
.+...+.+.|..|+++|-|++.+..+.
T Consensus 542 -------------ls~~qa~~~L~~Lv~~G~l~~~G~gr~ 568 (583)
T 3lmm_A 542 -------------VSRGTAKACVDGLVDEERVVAVGGGRS 568 (583)
T ss_dssp ----------------------------------------
T ss_pred -------------CCHHHHHHHHHHHHHCCcEEEeCCCCc
Confidence 556667999999999999999876543
No 19
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=78.99 E-value=2.5 Score=38.05 Aligned_cols=52 Identities=29% Similarity=0.422 Sum_probs=44.4
Q ss_pred EEEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 576 LIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 576 l~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
+.+|..|..||..+..++ +|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~--~~Glv~r~~ 85 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLV--KEGMLETSK 85 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeEecc
Confidence 357899999999999888 9999999999999999999999997 457777643
No 20
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=78.66 E-value=2.1 Score=38.60 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=44.2
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
+|..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLA--GQGLIEWQE 79 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 578999999998877789999999999999999999999997 457776643
No 21
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=78.64 E-value=1.8 Score=38.99 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=45.3
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
.+|..|..||..+...+++|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 84 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLE--KKDYVVRTR 84 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCeEecC
Confidence 3578999999999888899999999999999999999999997 457776653
No 22
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=78.48 E-value=1.8 Score=36.71 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~--~glv~~~ 67 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLK--RGFVRRE 67 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEEE
Confidence 5788999998887777899999999999999999999999973 4666543
No 23
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=78.34 E-value=1.3 Score=34.97 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=46.3
Q ss_pred eeeecccccccChHHHHHHHHHHhccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhcCCCChHHHHHHHHHhh
Q 003986 683 IVRIMKSRKVLGHQQLVLECVEQLGRMFKVHNTLFSFLFFFFVFVCESFVFLNLTTLALNEMLILQPDFKAIKKRIEDLI 762 (781)
Q Consensus 683 IVRiMK~~k~~~~~~L~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~ie~Li 762 (781)
-|...|.+|.+..++|-. .|. ...+++-.+|+.|.
T Consensus 12 Fi~yIk~~Kvv~LedLA~--------~F~-------------------------------------l~t~~~i~RI~~Le 46 (72)
T 1wi9_A 12 FINYIKKSKVVLLEDLAF--------QMG-------------------------------------LRTQDAINRIQDLL 46 (72)
T ss_dssp HHHHHHHCSEECHHHHHH--------HHC-------------------------------------SCHHHHHHHHHHHH
T ss_pred HHHHHHHcCeeeHHHHHH--------HhC-------------------------------------CChHHHHHHHHHHH
Confidence 366778999999888843 488 88999999999999
Q ss_pred hcccccccCCCCCcceecC
Q 003986 763 TRDYLERDKSNPNMFRYLA 781 (781)
Q Consensus 763 ~~eyl~r~~~~~~~~~Yia 781 (781)
+.|-|.=--+|+..|+||+
T Consensus 47 ~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 47 TEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHSSSCEEECTTCCEEECC
T ss_pred HCCCeEEEEeCCCCEEEec
Confidence 9999988778899999985
No 24
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=78.04 E-value=3.8 Score=34.29 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=43.5
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 646 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~ 646 (781)
+..+..||.++ ...+|+.||++.+|++...+.++|..|. +.+++.... +.|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~--~~Glv~~~~--------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLE--AGFCIERVG--------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET--------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEC--------CEEEECCC
Confidence 45566777777 4579999999999999999999999997 457776542 26777764
No 25
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=76.69 E-value=1.7 Score=39.12 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=41.5
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
.+|..|+.||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 85 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELE--GRNLVRRER 85 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 4678999999999888899999999999999999999999997 457776643
No 26
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=76.24 E-value=3.6 Score=37.48 Aligned_cols=50 Identities=6% Similarity=0.153 Sum_probs=44.0
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+...+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le--~~Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMD--ARGLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEec
Confidence 578999999999888899999999999999999999999997 34677654
No 27
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=76.14 E-value=2.7 Score=38.03 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=44.3
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.++..|..||..+...+++|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~--~Glv~r~ 87 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE--KKYIEVN 87 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEC-
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 46789999999998888999999999999999999999999974 4777654
No 28
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=75.82 E-value=4.2 Score=33.18 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=41.4
Q ss_pred HHHHHHhHcCCC---CcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEcc
Q 003986 582 QASALLLFNSSD---RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 645 (781)
Q Consensus 582 Q~~ILllFn~~~---~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~ 645 (781)
+..||.++.+.. .+|..+|++.+|++...+.++|..|. +.+++...+. ....|.++.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le--~~G~I~~~g~-----~~~~W~i~~ 71 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEAG-----TPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESS-----SSCEEEEC-
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecCC-----CCCeeEEeC
Confidence 455666665555 89999999999999999999999996 4466665431 125666654
No 29
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=75.28 E-value=2.3 Score=37.75 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=43.7
Q ss_pred EEcHHHHHHHHhHcCC--CCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 577 IVTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
.+|..|..||..+... +++|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 87 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS--QEDYFDKKR 87 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH--HTTSSCCBC
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecC
Confidence 3578899999887666 789999999999999999999999997 457776653
No 30
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=75.21 E-value=2.3 Score=38.75 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=43.7
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
+|..|..||..+..++++|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 89 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLE--QSGWVKRER 89 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEC--
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeeCC
Confidence 578999999998878899999999999999999999999997 457777653
No 31
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=75.02 E-value=2.6 Score=34.18 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=36.8
Q ss_pred HHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 585 ALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 585 ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
|+.+.++++.++++||++.+++++..+++-|..|.. .+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~--~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLES--MGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 566778888999999999999999999999999974 4566655
No 32
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=74.64 E-value=1.9 Score=38.77 Aligned_cols=51 Identities=24% Similarity=0.207 Sum_probs=44.3
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
+|..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 85 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLL--RKELIVREI 85 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCeeccC
Confidence 578999999888877899999999999999999999999997 457776643
No 33
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=74.51 E-value=3.2 Score=37.30 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhH-cCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLF-NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllF-n~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+ ...+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~--~~glv~r~ 85 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLE--SQGLVRRL 85 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH--HCCCeeec
Confidence 467888899888 777889999999999999999999999997 34667654
No 34
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=74.46 E-value=4 Score=36.61 Aligned_cols=49 Identities=4% Similarity=0.042 Sum_probs=42.4
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+|..|+.||..+. .+++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEE--MGLVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHH--CCCEEee
Confidence 4788999998888 78899999999999999999999999974 4667654
No 35
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=74.10 E-value=2.8 Score=37.12 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=42.7
Q ss_pred EEcHHHHHHHHhHcCCCC--cCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 577 IVTTYQASALLLFNSSDR--LSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~--~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.++..|..||..+.+.+. +|..||++.+|++...+.++|..|. +.+++.+.
T Consensus 23 gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~--~~GlV~r~ 75 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLH--EKEILQRS 75 (123)
T ss_dssp TCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEee
Confidence 457889999988776555 9999999999999999999999997 45677653
No 36
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=74.07 E-value=2.8 Score=34.74 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=36.8
Q ss_pred HHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 585 ALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 585 ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
|+.+.++.+.+|++||++.+++++..+++-|..|. +.+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le--~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERME--AMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHH--TTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 56677888899999999999999999999999997 44666654
No 37
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=73.85 E-value=2.5 Score=37.61 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|+.||..+..++++|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~--~glv~~~ 76 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEE--SGFIERE 76 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 5788999999888888999999999999999999999999973 4666653
No 38
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=73.77 E-value=3.2 Score=37.77 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
+|..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLI--SLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 578999999988888889999999999999999999999997 4467765
No 39
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=73.31 E-value=2.9 Score=37.31 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhHcCCC--CcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSD--RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~--~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+|..|..||..+...+ ++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~ 80 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE--RKKLIYRY 80 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeec
Confidence 5788999998877654 89999999999999999999999997 45777654
No 40
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=72.69 E-value=3.6 Score=37.29 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=43.5
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+...+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le--~~Glv~r~ 87 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQ--RAGLIERR 87 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeeec
Confidence 578899999988877899999999999999999999999997 34677654
No 41
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=72.69 E-value=3.8 Score=36.51 Aligned_cols=50 Identities=12% Similarity=0.255 Sum_probs=42.2
Q ss_pred EcHHHHHHHHhHcCCC--CcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSD--RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~--~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+|..|..||..+...+ ++|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~--~Gli~r~ 83 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI--KKLLYRK 83 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH--CCCEEee
Confidence 5788998998887666 899999999999999999999999973 4667654
No 42
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=72.34 E-value=3 Score=37.15 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+|..|+.||......+++|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~--~gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVC--KGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHH--CCCEEec
Confidence 4788999998888777899999999999999999999999973 4666654
No 43
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=71.93 E-value=5.8 Score=34.90 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=39.5
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+..+..||.++...+++|+.||++.+|++...+.++|..|. ..+++...
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~ 89 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLY--KQGVVNFR 89 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 34556677777655679999999999999999999999997 45777654
No 44
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=71.78 E-value=3.3 Score=35.04 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=39.6
Q ss_pred EcHHHHHHHHhHcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..+|+.+-. .+++|..||++.+|++...+.++|..|. +.+++...
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~--~~g~v~~~ 69 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLI--ELGLVVRT 69 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEee
Confidence 45667777655543 6789999999999999999999999997 35677654
No 45
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=71.72 E-value=3.9 Score=37.55 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=43.2
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~glv~r~ 96 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLL--ERGFIRRE 96 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC-
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeee
Confidence 578899999988877899999999999999999999999997 34777654
No 46
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=71.56 E-value=4.7 Score=32.94 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=34.5
Q ss_pred HHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 583 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 583 ~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
..||.++.+.. .|+.||++.+|++...+.++|..|. +.+++.+.
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le--~eG~I~~~ 63 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQ--RSAMVYSS 63 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEC
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeC
Confidence 34555555544 9999999999999999999999996 34667654
No 47
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=71.54 E-value=3.7 Score=38.66 Aligned_cols=66 Identities=8% Similarity=0.095 Sum_probs=43.4
Q ss_pred cCcceEEEEeEecCeeEEEEEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 558 YSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 558 ~~l~~~~i~~~~~~~~~~l~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
++.+++.+...- .-...++..+..||.++.+...+|+.||++.+|++...+.+.|..|.. .+++..
T Consensus 8 ~~~~~~~~~~~~---~m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~--~G~I~~ 73 (171)
T 2e1c_A 8 HHHSSGLVPRGS---HMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIKK 73 (171)
T ss_dssp -------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSSCC
T ss_pred cccccccccccc---ccccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEe
Confidence 445555555432 223357888989999888888999999999999999999999999974 466653
No 48
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=71.53 E-value=2.7 Score=38.85 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=43.8
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+|..|+.||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 93 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLL--ANGWIEKA 93 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCeEec
Confidence 578899999998888899999999999999999999999997 45777664
No 49
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=71.25 E-value=4.4 Score=32.81 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=43.0
Q ss_pred EEcHHHHHHHHhHcCC--CCcCHHHHHHHh-----CCCHHHHHHHHhHhhhccccccccC
Q 003986 577 IVTTYQASALLLFNSS--DRLSYSEIMTQL-----NLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
..+.-+..||..+.+. ..+|.+||++.+ +++...+.+.|..|.. .+++.+.
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~--~Glv~~~ 71 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD--AGIVTRH 71 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH--CCCeEEE
Confidence 4577888899888775 589999999999 9999999999999974 5777654
No 50
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=70.77 E-value=2.9 Score=38.58 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=44.3
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
+|..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLV--DEGLAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeeC
Confidence 578899999988877899999999999999999999999997 457777653
No 51
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=70.34 E-value=3.6 Score=36.67 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=43.5
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.++..|..||..+..++++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~--~gli~~~ 78 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEE--SGYIIRK 78 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEec
Confidence 35788999998888777899999999999999999999999974 4666554
No 52
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=69.76 E-value=3.9 Score=38.04 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhHcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 578 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 578 ~s~~Q~~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
++..|+.||..+.. .+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~GlV~r~~ 102 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE--DKGLISRQT 102 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEeeC
Confidence 56789999988876 5679999999999999999999999997 457777653
No 53
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=69.75 E-value=8.4 Score=32.45 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=43.8
Q ss_pred HHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003986 580 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 646 (781)
Q Consensus 580 ~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~ 646 (781)
.....||..+.+ ++.|+.||++.+|++...+.++|..|. +.+++.....+. ...|.++..
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~g~----~~~y~l~~~ 82 (102)
T 3pqk_A 23 PVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLR--ESGIVETRRNIK----QIFYRLTEA 82 (102)
T ss_dssp HHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHH--HTTSEEEECSSS----CCEEEECSS
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCC----EEEEEECcH
Confidence 445566766655 569999999999999999999999997 457776654332 345666653
No 54
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=69.70 E-value=3.9 Score=37.20 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+...+++|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQA--AGLVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHH--CCCEeec
Confidence 5788999998888778899999999999999999999999973 4666654
No 55
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=69.30 E-value=3.3 Score=38.59 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=43.9
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.++..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 92 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLV--GAELIDRL 92 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEec
Confidence 3578999999988877789999999999999999999999997 44677654
No 56
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=69.29 E-value=4.1 Score=34.14 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=43.2
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHH----HHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEI----MTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei----~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.++..|..||..+.+.+++|..+| ++.++++...+.+.|..|. +.+++.+.
T Consensus 5 ~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le--~~gli~r~ 59 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLI--QEGFVKER 59 (99)
T ss_dssp SSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 357789999999988889999999 8999999999999999997 34666653
No 57
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=69.06 E-value=3.1 Score=37.08 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+...+++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 36 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~--~glv~r~ 85 (140)
T 2nnn_A 36 LTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDK--RGLIQRS 85 (140)
T ss_dssp CCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHH--TTCEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 5788999998887777999999999999999999999999973 4666543
No 58
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=69.04 E-value=11 Score=35.06 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=42.2
Q ss_pred HHHHHHHhHcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003986 581 YQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 646 (781)
Q Consensus 581 ~Q~~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~ 646 (781)
+.+.+.+.-+. ...+|.++|++.+++|...+.+.|..|. +.+++.... | +++.|.+..+
T Consensus 30 lr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~--~aGlv~s~r-G----~~GGy~Lar~ 89 (159)
T 3lwf_A 30 LTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLR--NAGIVKSIR-G----AHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC-S----TTCEEEECSC
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCeEEEec-C----CCCceEecCC
Confidence 33344444443 3479999999999999999999999996 567776432 1 3567887764
No 59
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=68.97 E-value=4 Score=36.69 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhHcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+.. .+++|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 33 l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~--~glv~r~ 83 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER--GGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH--CCCEeeC
Confidence 57889999988887 78899999999999999999999999973 4667654
No 60
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=68.76 E-value=4 Score=37.54 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=43.4
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|+.||..+...+++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~--~Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQA--DGLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHH--CCCEEec
Confidence 5788999999888788999999999999999999999999973 4666653
No 61
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=68.53 E-value=5.7 Score=32.21 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=39.2
Q ss_pred HHHHHHHHhHcCCCCcCHHHHHHHhCCCHH-HHHHHHhHhhhccccccccC
Q 003986 580 TYQASALLLFNSSDRLSYSEIMTQLNLSDD-DVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 580 ~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~-~l~~~L~sL~~~k~kiL~~~ 629 (781)
..+--||.++...++.|..+|++.+|++.. .++++|..|- +-+++.+.
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le--~eGlV~~~ 59 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDME--RQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHH--HTTSEEEE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHH--HCCCEEec
Confidence 456667777777789999999999999998 9999999996 44666544
No 62
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=68.45 E-value=3.4 Score=37.05 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+|..|+.||..+...+++|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~--~gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEE--QGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHH--CCCEEee
Confidence 5778898998888778899999999999999999999999974 4666654
No 63
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=68.29 E-value=2.5 Score=37.67 Aligned_cols=50 Identities=10% Similarity=0.238 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+...+++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~--~gli~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKR--DGYVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHH--CCCeeec
Confidence 5788999999888888899999999999999999999999974 4666654
No 64
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=67.97 E-value=3.3 Score=37.18 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|+.||..+...+++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~--~glv~r~ 80 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEA--DGYLTRT 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHH--CCCeeec
Confidence 5788999998888777899999999999999999999999974 4666553
No 65
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=67.89 E-value=4.1 Score=36.83 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+...+++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~--~Glv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMER--NGLVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHH--CCCeeec
Confidence 5788999998888777899999999999999999999999974 4666553
No 66
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=67.49 E-value=4.4 Score=36.98 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+.+.+.+|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~--~Gli~r~ 91 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEK--RGLVVRE 91 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 5788999998887777899999999999999999999999973 4666653
No 67
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=67.29 E-value=9.5 Score=30.47 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=35.2
Q ss_pred HHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 585 ALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 585 ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
++..+.+.+..|..+|+..+|++...+.++|-+|. |.+.+.+.|
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~--kkG~V~~~~ 63 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQ--KEDTVKMVP 63 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHH--HCCCEecCC
Confidence 35566777779999999999999999999999997 445555544
No 68
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=67.26 E-value=11 Score=34.24 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=36.3
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEcc
Q 003986 593 DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 645 (781)
Q Consensus 593 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~ 645 (781)
..+|.++|++.+|+|...+.+.|..|. +.+++.... | +++.|.+..
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~--~aGlv~s~r-G----~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLR--NAGLIRSVR-G----AKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECS-S----SSSEEEESS
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCEEEecC-C----CCCCeeecC
Confidence 469999999999999999999999996 567775432 1 246687765
No 69
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=67.26 E-value=9.8 Score=29.91 Aligned_cols=57 Identities=7% Similarity=0.155 Sum_probs=42.8
Q ss_pred HHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccCCC
Q 003986 582 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFT 648 (781)
Q Consensus 582 Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~F~ 648 (781)
.-.|.-+|.++.-+|+.+|.+.|+=|+..|+.+|..++ ++.+.++ ..+.+.+-++|.
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia-----~~~k~g~-----~~~~weLKpEyr 66 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG-----VQNVKGI-----HKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC-----CCBCCTT-----CCCBBCCCCSSC
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH-----HHHcCCC-----CCCeeeCcHHHh
Confidence 34567789999999999999999999999999999875 3444321 235566665554
No 70
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=66.93 E-value=3.5 Score=37.49 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=43.7
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.++..|..||..+...+++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 84 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQ--KNLIART 84 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEeec
Confidence 35788999998888777899999999999999999999999974 4666654
No 71
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=66.85 E-value=3 Score=38.39 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+|..|..||..+...+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 97 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLV--DEGYVFRQ 97 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 467888888888777889999999999999999999999997 45777654
No 72
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=66.80 E-value=6.8 Score=35.12 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=38.5
Q ss_pred EcHHHHHHHHhHc-CCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFN-SSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn-~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..+|..+. ..+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~--~~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLE--ELGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 3566666654442 34679999999999999999999999997 45777664
No 73
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=66.61 E-value=2.9 Score=37.53 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+...+++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~--~gli~r~ 84 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQ--VDLIKRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCEEee
Confidence 5788999999888778899999999999999999999999974 4666654
No 74
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=66.40 E-value=9.4 Score=30.97 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=32.3
Q ss_pred HHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhh
Q 003986 584 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSC 620 (781)
Q Consensus 584 ~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 620 (781)
.|--++++...+|+++|++.||++++++..+|.-|..
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 4556677777999999999999999999999999975
No 75
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=66.23 E-value=6.3 Score=33.19 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=43.7
Q ss_pred EEEcHHHHHHHHhHcCCCCcCHHHHHH-HhCCCHHHHHHHHhHhhhccccccc
Q 003986 576 LIVTTYQASALLLFNSSDRLSYSEIMT-QLNLSDDDVVRLLHSLSCAKYKILN 627 (781)
Q Consensus 576 l~~s~~Q~~ILllFn~~~~~t~~ei~~-~t~i~~~~l~~~L~sL~~~k~kiL~ 627 (781)
..++..|+.||......+..|..+|++ ..+++...+-+++.+|. +-+++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~--r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLI--KKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHH--TTTSEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHH--HCCCee
Confidence 356889999999998888999999999 99999999999999997 446665
No 76
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=66.22 E-value=5.2 Score=36.18 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=41.1
Q ss_pred EcHHHHHHHHhHcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+|..|..||..+.. .+.+|..+|++.++++...+.+.+..|. +.+++.+.
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv~r~ 87 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE--ERGLVVRT 87 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH--TTTSEEC-
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEee
Confidence 56889999987753 4478999999999999999999999997 45777664
No 77
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=66.13 E-value=4.4 Score=36.91 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=41.2
Q ss_pred EcHHHHHHHHhH--cCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 578 VTTYQASALLLF--NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 578 ~s~~Q~~ILllF--n~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
+|..|+.||..+ ++.+++|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le--~~Glv~r~~ 85 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV--RSGLVAKRP 85 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--hCCCEEEee
Confidence 567788777655 455679999999999999999999999997 457776653
No 78
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=65.99 E-value=3.3 Score=36.96 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|+.||..+...+++|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~--~glv~r~ 83 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLER--DGIVRRW 83 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHH--CCCEEee
Confidence 5788999998888777899999999999999999999999973 4666553
No 79
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=65.91 E-value=4 Score=36.71 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+...+++|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~--~glv~r~ 87 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQ--QGLITRK 87 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHH--HTSEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHH--CCCEEec
Confidence 5788999998888777899999999999999999999999974 4677654
No 80
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=65.76 E-value=2.8 Score=38.03 Aligned_cols=50 Identities=8% Similarity=0.179 Sum_probs=36.8
Q ss_pred EcHHHHHHHHhHcCC--CCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+|..|+.||..+... +++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~ 90 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLE--KKGYIERR 90 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHH--HTTSBCCC
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEee
Confidence 578899999887765 789999999999999999999999997 45777664
No 81
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=65.40 E-value=5 Score=32.40 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=43.1
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhC----CCHHHHHHHHhHhhhccccccccCC
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
.+|..|..||..+-+.+++|..||++.++ ++...+.+.|..|.. .+++.+.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~--kGlv~r~~ 61 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK--KGALNHHK 61 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH--TTSEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH--CCCeEEEe
Confidence 36788999998887778899999999996 688999999999974 46776643
No 82
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=65.13 E-value=4 Score=36.63 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=42.7
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.+|..|..||..+..++. |..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~--~Glv~r~ 83 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEA--KGLVRRI 83 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHH--CCCEEec
Confidence 357889999998888777 9999999999999999999999973 4677654
No 83
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=64.82 E-value=6.5 Score=36.65 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=40.8
Q ss_pred HHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEcc
Q 003986 582 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 645 (781)
Q Consensus 582 Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~ 645 (781)
.+.+.+.-+....+|.++|++.+|+|...+.+.|..|. +.+++.... | .++.|.+..
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~--~aGlv~s~r-G----~~GGy~Lar 72 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLH--KHGYLTGTV-G----KNGGYQLDL 72 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHH--HTTSSEEEC-S----TTCEEECCS
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeec-C----CCCCeEecC
Confidence 34444444555679999999999999999999999997 567765332 1 245676655
No 84
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=64.18 E-value=9.1 Score=34.77 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=40.7
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
+..+..||.++.++..+|..+|++.+|++...+.+.|..|.. .+++..
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEK--DGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--TTSSCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEE
Confidence 345677888888888999999999999999999999999974 466654
No 85
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=63.57 E-value=4.3 Score=31.66 Aligned_cols=45 Identities=7% Similarity=0.161 Sum_probs=35.2
Q ss_pred HHHHHHHhHcCC-CCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccc
Q 003986 581 YQASALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 627 (781)
Q Consensus 581 ~Q~~ILllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~ 627 (781)
..-.||.+|.+. ..+|..||++.+|++...+.+.|..|.. .+++.
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~--~G~I~ 56 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK--EDRVS 56 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEe
Confidence 344577777554 4799999999999999999999999974 34443
No 86
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=63.50 E-value=5.4 Score=38.02 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhHcC--CCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+|..|..||..+.. .+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 90 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLE--KNGYVDVI 90 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEec
Confidence 68999999988775 4589999999999999999999999997 45777664
No 87
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=63.39 E-value=7.6 Score=35.46 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=42.3
Q ss_pred EcHHHHHHHHhHcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 578 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 578 ~s~~Q~~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
+|..|+.||..+.. .+..+..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le--~~GlV~R~~ 80 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE--EKGLITRHT 80 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH--hCCCeEeec
Confidence 57889999988864 4567889999999999999999999997 457776653
No 88
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=63.29 E-value=11 Score=34.32 Aligned_cols=57 Identities=9% Similarity=0.033 Sum_probs=40.0
Q ss_pred HHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003986 582 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 646 (781)
Q Consensus 582 Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~ 646 (781)
.+.+.+.-+....+|..+|++.+++|...+.+.|..|. +.+++.... .++.|.+..+
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~--~~Glv~s~r------G~GGy~L~~~ 74 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLK--QAGFVYVNR------GPGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEcc------CCCceEeCCC
Confidence 33344444444579999999999999999999999997 567776432 1456777654
No 89
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=63.22 E-value=3.7 Score=33.23 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHhhhccccccc
Q 003986 749 PDFKAIKKRIEDLITRDYLERD 770 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~ 770 (781)
++...|.+-++.|.++|+|+|-
T Consensus 28 VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 28 TPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEe
Confidence 9999999999999999999997
No 90
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=63.13 E-value=5.3 Score=33.26 Aligned_cols=48 Identities=10% Similarity=0.251 Sum_probs=39.5
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
+..+..||..+...+++|..+|++.+|++...+.++|..|.. .+++.+
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~--~gli~~ 62 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLER--NGLVKT 62 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 566778887776566899999999999999999999999973 466654
No 91
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=63.05 E-value=5.8 Score=35.78 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=41.7
Q ss_pred EEEEcHHHHHHHHhHcC-----CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 575 ELIVTTYQASALLLFNS-----SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 575 ~l~~s~~Q~~ILllFn~-----~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
++-+|.-++.+|+.+-. ....|.++|++.+|++..++.+.|+.|.. -++|..
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~--KGlI~i 83 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ--KGFLFI 83 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH--HTSCEE
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 45678888888876543 34689999999999999999999999985 356654
No 92
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=62.12 E-value=7.1 Score=33.26 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=38.1
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+..+..||.++. .+++|+.||++.+|++...+.++|..|. +.+++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 355666776666 4578999999999999999999999997 45677643
No 93
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=62.09 E-value=2.9 Score=33.86 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=25.7
Q ss_pred CChHHHHHHHHHhhhcccccccCCCCCcceec
Q 003986 749 PDFKAIKKRIEDLITRDYLERDKSNPNMFRYL 780 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~~~~~~~~Yi 780 (781)
++...+...++.|.++|||+|..++ ..+.|-
T Consensus 39 ~s~~Tv~~~l~rL~~kGlv~r~~~g-r~~~y~ 69 (82)
T 1p6r_A 39 WSPKTIQTMLLRLIKKGALNHHKEG-RVFVYT 69 (82)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred ccHHHHHHHHHHHHHCCCeEEEecC-CEEEEE
Confidence 5688899999999999999998754 467774
No 94
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=62.02 E-value=5.9 Score=34.01 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=38.5
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+..+..||..+ ..+++|+.+|++.+|++...+.++|..|. +.+++...
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~--~~gli~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQ--ACGLVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeeEE
Confidence 35667777777 44679999999999999999999999997 45677653
No 95
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=61.60 E-value=8.3 Score=35.13 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=41.6
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
++..+..||.++.++..+|+.||++.+|++...+.+.|..|.. .+++..
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLES--RGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 5677888888888778899999999999999999999999973 466653
No 96
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=61.41 E-value=4.4 Score=36.80 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=42.6
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
.+|..|..||..+ ..+++|..+|++.+|++...+.+.+..|. +.+++.+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLL--NAELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHH--HTTSEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 3578999999888 77899999999999999999999999997 4467765
No 97
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=61.25 E-value=8.5 Score=34.21 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=40.8
Q ss_pred EEEcHHHHHHHHhHc---C-C-CCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 576 LIVTTYQASALLLFN---S-S-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 576 l~~s~~Q~~ILllFn---~-~-~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
+-++.-|+.||+++- + . ...|.++|++.+|++...+.++|..|. +.++|.+.+
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le--~kGlI~~~~ 85 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL--QKGMIAIEE 85 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH--HTTSSEECC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 446777877776653 2 2 248999999999999999999999998 457777653
No 98
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=60.98 E-value=18 Score=31.87 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=35.8
Q ss_pred CCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003986 592 SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 646 (781)
Q Consensus 592 ~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~ 646 (781)
...+|..+|++.+|+|...+.+.|..|. +.+++...+ | .++.|.+..+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~--~~Glv~~~~-g----~~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR--NAGLVKSIR-G----AYGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEecC-C----CCCceEeCCC
Confidence 3579999999999999999999999997 457775432 1 2356777654
No 99
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=60.76 E-value=5.4 Score=38.77 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=43.9
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
+|..|..||..+...+++|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le--~~GlV~r~~ 96 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLE--ERGYLRFSK 96 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 578999999888777789999999999999999999999997 457776643
No 100
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=59.89 E-value=4 Score=33.82 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHhhhcccccccC
Q 003986 749 PDFKAIKKRIEDLITRDYLERDK 771 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~ 771 (781)
++...|.+-++.|.++|+|+|-.
T Consensus 28 VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 28 TPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEEe
Confidence 99999999999999999999974
No 101
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=58.79 E-value=4.4 Score=37.10 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhH-cCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLF-NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllF-n~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|+.||..+ ...+++|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le--~~Gli~r~ 95 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLI--KDGMVVKA 95 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHH--HHTSEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEee
Confidence 578899999888 567789999999999999999999999997 34777664
No 102
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=57.89 E-value=11 Score=34.12 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=40.5
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
++..+..||.++.++..+|..||++.+|++...+.+.|..|.. .+++.+
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLES--FGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 3456777888888778899999999999999999999999973 466653
No 103
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=57.49 E-value=18 Score=32.78 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=38.9
Q ss_pred HHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003986 583 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 646 (781)
Q Consensus 583 ~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~ 646 (781)
+.+.+.-+.. . |.++|++.+++|...+.+.|..|. +.+++.... .++.|.+..+
T Consensus 14 ~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~--~aGlv~s~r------G~GGy~Lar~ 67 (145)
T 1xd7_A 14 ILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLK--KADILTSRA------GVPGASLKKD 67 (145)
T ss_dssp HHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECCS------SSSSCEESSC
T ss_pred HHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHH--HCCceEeec------CCCCceecCC
Confidence 3344444443 5 999999999999999999999997 568876432 1455776653
No 104
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=57.49 E-value=7.9 Score=38.77 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=42.9
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.++..|..||..+.+.+.+|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 149 ~L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le--~~GlV~r~ 199 (244)
T 2wte_A 149 DYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELK--KFGILTQK 199 (244)
T ss_dssp CCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 3567888999888767789999999999999999999999997 45677653
No 105
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=57.12 E-value=10 Score=35.62 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=42.4
Q ss_pred EEEEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccc
Q 003986 575 ELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 627 (781)
Q Consensus 575 ~l~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~ 627 (781)
...++..+..||.++..+..+|+.||++.+|++...+.+.|..|.. .+++.
T Consensus 12 ~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~--~G~I~ 62 (171)
T 2ia0_A 12 EIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQE--RGVIE 62 (171)
T ss_dssp --CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEE
T ss_pred cCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEE
Confidence 3456778888998888888899999999999999999999999973 46664
No 106
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=57.04 E-value=12 Score=32.46 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=38.6
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+..+..||.++.+ ++.++.||++.+|++...+.++|..|. +.+++...
T Consensus 20 ~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~ 67 (118)
T 2jsc_A 20 DPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLR--GCGLVVAT 67 (118)
T ss_dssp SHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHT--TTTSEEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEE
Confidence 4566777777764 468999999999999999999999996 45777654
No 107
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=56.45 E-value=6.1 Score=33.92 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=36.5
Q ss_pred HHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 581 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 581 ~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.+..||.++.+ +++|+.||++.+|++...+.++|..|. +.+++...
T Consensus 26 ~r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~ 71 (108)
T 2kko_A 26 RRLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALK--SGGLVEAR 71 (108)
T ss_dssp TTHHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 34456666664 678999999999999999999999997 45777654
No 108
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=55.96 E-value=16 Score=30.16 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=35.8
Q ss_pred EEEEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 575 ELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 575 ~l~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
...+|.-+..||.++- .++|..||++.+|++...++.++..+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3466788888888877 468999999999999999999998875
No 109
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=55.75 E-value=13 Score=36.86 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=43.2
Q ss_pred HHHHhHcCCC-CcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003986 584 SALLLFNSSD-RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 646 (781)
Q Consensus 584 ~ILllFn~~~-~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~ 646 (781)
.||.+|.+.. .+|+.||++.+|++...+.+.|..|. +.+++.+.+. +..|.+...
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~~~------~~~Y~lg~~ 65 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALE--EEFLVEALGP------AGGFRLGPA 65 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHH--TTTSEEECGG------GCEEEECSH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeCC------CCeEEECHH
Confidence 5777887654 79999999999999999999999997 4577776531 356777654
No 110
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=55.72 E-value=9 Score=34.32 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=39.6
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
+..+..||..+.++..+|+.+|++.+|++...+.+.|..|.. .+++..
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 50 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEE--KGIIEG 50 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSSCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEec
Confidence 345677888887777899999999999999999999999974 466654
No 111
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=55.02 E-value=11 Score=34.25 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=41.4
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
++..+..||.++.++..+|+.||++.+|++...+.+.|..|.. .+++..
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQ--AGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--cCCcce
Confidence 4567778888888888999999999999999999999999973 466653
No 112
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=54.93 E-value=19 Score=27.83 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=33.8
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
.+|.-|..|+.++ ..+.|..||++.+|++...+...+..+.
T Consensus 11 ~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 11 LLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3577788888777 3467999999999999999998888764
No 113
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=54.42 E-value=12 Score=31.54 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=41.4
Q ss_pred EEcHHHHHHHHhHcCC------CCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 577 IVTTYQASALLLFNSS------DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~------~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
-+++.|..+|..+.+. ..++..+|++.++++...+.++|..|. +.+++..
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe--~~GLV~r 68 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQ--AAGLADV 68 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHH--HCCCEEe
Confidence 3678999998866554 679999999999999999999999997 4466654
No 114
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=54.32 E-value=12 Score=34.00 Aligned_cols=49 Identities=10% Similarity=0.223 Sum_probs=41.2
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
++..+..||.++.++...|+.+|++.+|++...+.+.|..|.. .+++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHH--HTSSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 4567778888888878999999999999999999999999974 466653
No 115
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=54.22 E-value=10 Score=38.22 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=44.5
Q ss_pred HHHHHhHcCC-CCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003986 583 ASALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 646 (781)
Q Consensus 583 ~~ILllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~ 646 (781)
..||.+|.+. ..+|+.||++.+|++...+.+.|..|.. .+.+.+.+. +..|.+-..
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~--~G~v~~~~~------~~~Y~lG~~ 65 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQE--AGFVEQVEG------ARSYRLGPQ 65 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEEECSS------SSEEEECTT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEcCC------CCcEEcCHH
Confidence 3577888864 6899999999999999999999999974 578877542 356777654
No 116
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=54.10 E-value=12 Score=33.97 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=40.9
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccc
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 627 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~ 627 (781)
++..+..||.++.++..+|..+|++.+|++...+.+.+..|.. .+++.
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~ 54 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKK--LGIIR 54 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHH--HTSEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEE
Confidence 4567778888888888999999999999999999999999973 45665
No 117
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=53.44 E-value=17 Score=27.40 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHHHhHcCCCCcCHHHHHHHh-----CCCHHHHHHHHhHh
Q 003986 582 QASALLLFNSSDRLSYSEIMTQL-----NLSDDDVVRLLHSL 618 (781)
Q Consensus 582 Q~~ILllFn~~~~~t~~ei~~~t-----~i~~~~l~~~L~sL 618 (781)
+..|+.+++....+|.+||++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 44455566667789999999999 99999999999854
No 118
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=52.31 E-value=21 Score=28.77 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=33.7
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
.+|.-|..|+.++ ..++|.+||++.+|++...++..+....
T Consensus 21 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 21 QLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp GSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567788888776 3568999999999999999998887664
No 119
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=52.10 E-value=15 Score=33.95 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=41.2
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
++..+..||.++.++..+|+.||++.+|++...+.+.|..|.. .+++..
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLED--AGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEee
Confidence 4567778888888888899999999999999999999999973 466653
No 120
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=51.78 E-value=17 Score=32.94 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=37.0
Q ss_pred EcHHHHHHHHhHcCC-----CCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccc
Q 003986 578 VTTYQASALLLFNSS-----DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL 626 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~-----~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL 626 (781)
+|..|+.||...... +++|..+|++.++++...+.+.+..|.. .+++
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~--~glV 82 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRR--DGLV 82 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHH--TTSB
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCE
Confidence 578899999887654 3589999999999999999999999973 3555
No 121
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=51.32 E-value=11 Score=42.44 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=83.2
Q ss_pred cCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccCCCCCceeEEecCCCchhhhhhHH
Q 003986 590 NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIE 669 (781)
Q Consensus 590 n~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~F~~~~~~i~i~~~~~~e~~~~~~ 669 (781)
..++.+|+.+|...|+++...++.+|..|+. .+++...+.+. +...|.+|.+ .-..+++.|. .-.
T Consensus 29 l~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQ--h~lV~~~~~~~---~~~~Y~~~~~--~il~~lR~pk--------~l~ 93 (534)
T 2xub_A 29 IRTGSQPLRVIAHDTGTSLDQVKKALCVLVQ--HNLVSYQVHKR---GVVEYEAQCS--RVLRMLRYPR--------YIY 93 (534)
T ss_dssp HHHCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETT---TEEEEEECHH--HHHGGGGHHH--------HHH
T ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHHHHHh--cCCeeEEeCCC---CcEEEEEChh--hHHHHHhhHH--------HHH
Confidence 3457899999999999999999999999974 56665332110 1234555532 0001111110 000
Q ss_pred hHHHhhhhhhcceeeeecccccccChHHHHHHHHHHhccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhcCCC
Q 003986 670 DVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKVHNTLFSFLFFFFVFVCESFVFLNLTTLALNEMLILQP 749 (781)
Q Consensus 670 ~v~~~R~~~I~A~IVRiMK~~k~~~~~~L~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (781)
..+.+--..-|.|+-.+=..+.++.++|+..+.+.+...-.+ ...+
T Consensus 94 -~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~---------------------------------~~~~ 139 (534)
T 2xub_A 94 -TTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMED---------------------------------GKTM 139 (534)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSS---------------------------------SCCC
T ss_pred -HHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhccccccc---------------------------------cccc
Confidence 111111122356666666788999999998887765421110 0116
Q ss_pred ChHHHHHHHHHhhhcccccccCC
Q 003986 750 DFKAIKKRIEDLITRDYLERDKS 772 (781)
Q Consensus 750 ~~~~ik~~ie~Li~~eyl~r~~~ 772 (781)
+...+...+..|++.+||.|-+.
T Consensus 140 ~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 140 DYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp CHHHHHHHHHHHHHTTSEEECCC
T ss_pred CHHHHHHHHHHHHhCCCEEeCCC
Confidence 78899999999999999999764
No 122
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=51.21 E-value=9 Score=33.49 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=43.1
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhC----CCHHHHHHHHhHhhhccccccccC
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.+|..|..||..+-+.+++|..||++.++ ++...+...|..|. +-+++.+.
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLY--KKEIIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHH--HCCceEEE
Confidence 46889999998888788999999999997 57899999999997 44677654
No 123
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=51.09 E-value=15 Score=36.42 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=37.4
Q ss_pred HHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 580 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 580 ~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
.....||.++.+ +++|+.+|++.+|++...+.++|..|. +.+++..
T Consensus 12 ~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le--~aGLV~~ 57 (232)
T 2qlz_A 12 KVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIME--REGVLQS 57 (232)
T ss_dssp HHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHH--HTTSEEE
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 445567766664 679999999999999999999999997 4577765
No 124
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=50.05 E-value=11 Score=33.81 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHhhhcccccc
Q 003986 749 PDFKAIKKRIEDLITRDYLER 769 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r 769 (781)
.+...|-+.|..|+++|||++
T Consensus 63 ~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 63 ISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp SCHHHHHHHHHHHHHHTSCEE
T ss_pred cCHHHHHHHHHHHHHCCCEEE
Confidence 788999999999999999999
No 125
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=49.91 E-value=13 Score=32.19 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=38.1
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+.....||.++.+ ++.|+.||++.+|++...+-++|..|. +.+++...
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~--~~GlV~~~ 64 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLE--DSGWIRTH 64 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 3455567766664 678999999999999999999999997 45777654
No 126
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=49.90 E-value=11 Score=31.97 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=27.0
Q ss_pred CChHHHHHHHHHhhhcccccccCCCCCcceecC
Q 003986 749 PDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 781 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~~~~~~~~Yia 781 (781)
++...|...|+.|.++|||+|..+ ...|.|-|
T Consensus 65 ~s~sTVt~~L~rLe~KGlV~R~~~-gR~~~Y~p 96 (99)
T 2k4b_A 65 WSLATVKTLLGRLVKKEMLSTEKE-GRKFVYRP 96 (99)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEEEE-TTEEEEEC
T ss_pred CCHhhHHHHHHHHHHCCCEEEEeC-CCEEEEEE
Confidence 568889999999999999999875 45788865
No 127
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=49.88 E-value=17 Score=32.45 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhHcC-CCCcCHHHHHHHhC----CCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNS-SDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~-~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+|..|..||..+-+ .+++|..||++.++ ++...+.+.|..|. +-+++.+.
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~r~ 61 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA--KKNLVLQI 61 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 57889999988877 57899999999998 79999999999997 34677654
No 128
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=49.82 E-value=12 Score=41.14 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=45.5
Q ss_pred EEcHHHHHHHHhHcCC--CCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 577 IVTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
.+|..|..||..+.++ +++|..||++.++++...+.+.|..|. +.+++.+.+
T Consensus 401 ~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le--~~g~v~r~~ 454 (487)
T 1hsj_A 401 NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLK--DLKLLSKKR 454 (487)
T ss_dssp CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHH--TTTTSCCEE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecC
Confidence 4689999999999887 889999999999999999999999997 457777653
No 129
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=49.35 E-value=6.1 Score=33.05 Aligned_cols=28 Identities=7% Similarity=0.075 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHhhhcccccccCCCCCc
Q 003986 749 PDFKAIKKRIEDLITRDYLERDKSNPNM 776 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~~~~~~ 776 (781)
.+...+-+.|..|.++||++|..+.+..
T Consensus 38 is~~tvs~~l~~Le~~gli~r~~~~r~~ 65 (99)
T 1tbx_A 38 MSTATFYDAKKFLIQEGFVKERQERGEK 65 (99)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEEecCCce
Confidence 7889999999999999999997654433
No 130
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=49.25 E-value=6.2 Score=36.53 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=39.2
Q ss_pred EcHHHHHHHHhHcC--CCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+|..|+.||..+.. .+++|..+|++.++++...+.+.+..|. +.+++.+.
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 95 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD--DRGLVLRT 95 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEeec
Confidence 57889999988776 3589999999999999999999999997 45777654
No 131
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.69 E-value=18 Score=30.35 Aligned_cols=50 Identities=10% Similarity=0.174 Sum_probs=42.3
Q ss_pred EEcHHHHHHHHhHcC--CCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 577 IVTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
.++..|..|+-+..+ ++.++..+|...|+++...+.++|..|.. -+++..
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~--k~lIK~ 85 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKA 85 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh--CCCEEE
Confidence 568899999988876 56799999999999999999999999975 255544
No 132
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=48.44 E-value=15 Score=36.76 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=43.6
Q ss_pred EEcHHHHHHHHhHcCCC--CcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 577 IVTTYQASALLLFNSSD--RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~--~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
.+|..|..||..+...+ ++|..||++.++++...+.+.+..|. +.+++.+.+
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe--~~GlV~R~~ 208 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLK--KQGYLIKER 208 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeeC
Confidence 35789999998887654 59999999999999999999999997 457777654
No 133
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=48.24 E-value=21 Score=31.20 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=37.2
Q ss_pred HHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 580 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 580 ~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
..+..||..+.+ ++.++.+|++.+|++...+-++|..|.. .+++...
T Consensus 46 ~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~--~Glv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRN--LRLVSYR 92 (122)
T ss_dssp HHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEE
Confidence 455667766664 5789999999999999999999999974 5666543
No 134
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=48.14 E-value=13 Score=37.80 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=40.9
Q ss_pred HHHHhHcCCC-CcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003986 584 SALLLFNSSD-RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 646 (781)
Q Consensus 584 ~ILllFn~~~-~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~ 646 (781)
.||.+|.+.. ++|+.||++.+|++...+.+.|..|.. .+.|.+.+ ++.|.+-..
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~--~G~v~~~~-------~~~Y~LG~~ 88 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE--LDLLARSA-------DGTLRIGPH 88 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH--TTSEEECT-------TSEEEECTH
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECC-------CCcEEehHH
Confidence 4788888654 799999999999999999999999984 57787653 345766553
No 135
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=47.52 E-value=23 Score=35.29 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=42.3
Q ss_pred HHHHHhHcCCC-CcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003986 583 ASALLLFNSSD-RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 646 (781)
Q Consensus 583 ~~ILllFn~~~-~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~ 646 (781)
..||.+|.+.. .+|+.||++.+|++...+.+.|..|.. .+++.+. .+..|.+...
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~--~G~v~~~-------~~~~Y~lg~~ 66 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE--KGFVLRK-------KDKRYVPGYK 66 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEC-------TTSCEEECTH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEEC-------CCCcEEECHH
Confidence 45777787654 799999999999999999999999974 5677653 2355776553
No 136
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=47.24 E-value=26 Score=32.33 Aligned_cols=45 Identities=11% Similarity=0.249 Sum_probs=38.1
Q ss_pred HHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccc
Q 003986 581 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 627 (781)
Q Consensus 581 ~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~ 627 (781)
....||.++.++..+|+.+|++.+|++...+.+.+..|.. .+++.
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~--~g~i~ 48 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEE--DGVIR 48 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHH--TTSSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCee
Confidence 3456788888888999999999999999999999999974 45665
No 137
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=47.11 E-value=20 Score=30.93 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=38.0
Q ss_pred HHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 580 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 580 ~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
..|..||..+.+ +..|+.+|++.+|++...+-++|..|.. .+++..
T Consensus 32 ~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~--~Glv~~ 77 (119)
T 2lkp_A 32 PSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRN--LGLVVG 77 (119)
T ss_dssp HHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHH--HCSEEE
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 567778877776 6789999999999999999999999974 455543
No 138
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=46.72 E-value=10 Score=32.95 Aligned_cols=51 Identities=10% Similarity=0.157 Sum_probs=42.6
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhC----CCHHHHHHHHhHhhhccccccccC
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.+|..|..||..+.+.+++|..+|++.++ ++...+.+.|..|.. .+++.+.
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~--~Glv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYK--KGFIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH--CCCeEEE
Confidence 46788999998887777899999999999 779999999999973 4666653
No 139
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=46.35 E-value=23 Score=29.43 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=34.5
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
.+|.-|..|+.++ ..++|.+||++.+|++...++..+....
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4678888888877 4568999999999999999998888765
No 140
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=46.35 E-value=28 Score=27.37 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=32.3
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
+|.-|-.|+.++ ..++|.+||++.+|++...++..+....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777776 4578999999999999999998887664
No 141
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=46.03 E-value=27 Score=27.92 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=33.1
Q ss_pred HHHHHhHcCCCCcCHHHHHHHhCC-CHHHHHHHHhHhhh
Q 003986 583 ASALLLFNSSDRLSYSEIMTQLNL-SDDDVVRLLHSLSC 620 (781)
Q Consensus 583 ~~ILllFn~~~~~t~~ei~~~t~i-~~~~l~~~L~sL~~ 620 (781)
..|--++|+...+|+.+|++.||+ +++++..++.-|..
T Consensus 13 G~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 13 GQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 345567788889999999999999 99999999998875
No 142
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=45.29 E-value=16 Score=30.16 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=35.5
Q ss_pred HHHHHHHhHcCCC-CcCHHHHHHHhCCCHHH-HHHHHhHhhhccccccc
Q 003986 581 YQASALLLFNSSD-RLSYSEIMTQLNLSDDD-VVRLLHSLSCAKYKILN 627 (781)
Q Consensus 581 ~Q~~ILllFn~~~-~~t~~ei~~~t~i~~~~-l~~~L~sL~~~k~kiL~ 627 (781)
-+..+|..+...+ ++|..||++.+|++... +.+.|..|.. .+++.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~--~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIR--AGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHH--CCCee
Confidence 3455677776665 79999999999999999 9999999973 35554
No 143
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=43.35 E-value=23 Score=30.59 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=41.6
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHh--CCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQL--NLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t--~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++...-.||.++.+...+|..+|++.+ |++...+.++|..|. +.+++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le--~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLA--DHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEec
Confidence 456667788888776799999999999 999999999999997 45777653
No 144
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=42.82 E-value=12 Score=37.48 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=43.9
Q ss_pred EEcHHHHHHHHhHcCC--CCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 577 IVTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
.+|..|..||..+.++ +++|..||++.++++...+.+.|..|. +.+++.+.+
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe--~~G~i~R~~ 84 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLV--KHSYISKVR 84 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHH--HTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEecC
Confidence 4689999999998764 589999999999999999999999997 457776653
No 145
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=41.44 E-value=21 Score=30.27 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=33.5
Q ss_pred HHHhH-cCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 585 ALLLF-NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 585 ILllF-n~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
||..+ ..++.+|..+|++.+|++...+.++|..|.. .+++...
T Consensus 23 Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~--~GlV~~~ 66 (110)
T 1q1h_A 23 VLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEE--QGFVSYR 66 (110)
T ss_dssp HHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHH--HTSCEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 44333 4555799999999999999999999999974 4666543
No 146
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=40.97 E-value=21 Score=29.78 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=32.6
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
++....||..+-..++.|+.||++.+|++...+-++|..|.
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~ 66 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMR 66 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHB
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45556666333334679999999999999999999999996
No 147
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=39.96 E-value=19 Score=28.85 Aligned_cols=36 Identities=6% Similarity=0.244 Sum_probs=30.9
Q ss_pred HHHHhHcCC-CCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 584 SALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 584 ~ILllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
.||-.+.+. .+++..+|++.+|++.++|.++|..|-
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 466666654 689999999999999999999999995
No 148
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.78 E-value=17 Score=29.16 Aligned_cols=31 Identities=3% Similarity=0.071 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHhhhcccccccCCCCCccee
Q 003986 749 PDFKAIKKRIEDLITRDYLERDKSNPNMFRY 779 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~~~~~~~~Y 779 (781)
++...|-+.++.|.+.|+|.|...+.+...|
T Consensus 50 is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 50 IGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred CCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 6788999999999999999997653334444
No 149
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=39.19 E-value=33 Score=34.28 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=42.5
Q ss_pred HHHHHhHcCC-CCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003986 583 ASALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 646 (781)
Q Consensus 583 ~~ILllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~ 646 (781)
..||.+|.+. ..+|+.||++.+|++...+.+.|..|.. .+++.+. +..|.+...
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~--~G~v~~~--------~~~Y~Lg~~ 71 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK--LGYVAGS--------GGRWSLTPR 71 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE--------TTEEEECGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC--------CCEEEEcHH
Confidence 3578888754 5799999999999999999999999974 5677653 256777654
No 150
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=39.18 E-value=6.4 Score=33.43 Aligned_cols=52 Identities=25% Similarity=0.201 Sum_probs=41.8
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhC----CCHHHHHHHHhHhhhccccccccCC
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
.+|..|..||..+-+.+++|..||++.++ ++...+.+.|..|. +.+++.+.+
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe--~KGlV~R~~ 87 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLV--KKEMLSTEK 87 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH--HTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH--HCCCEEEEe
Confidence 46778888888877777899999999997 46889999999997 446776653
No 151
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=38.98 E-value=29 Score=34.94 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=42.6
Q ss_pred HHHHhHcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccCC
Q 003986 584 SALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKF 647 (781)
Q Consensus 584 ~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~F 647 (781)
.||.+|.+ ...+|+.||++.+|++...+.+.|..|.. .+.+.+. +..|.+...+
T Consensus 25 ~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~--~G~v~~~--------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 25 AVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE--LGYVATD--------GSAFWLTPRV 79 (265)
T ss_dssp HHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEES--------SSEEEECGGG
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEec--------CCEEEEcHHH
Confidence 57788875 46899999999999999999999999974 4677653 3567776543
No 152
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=38.69 E-value=50 Score=25.11 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=30.1
Q ss_pred EcHHHHHHHHhHc---CCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 578 VTTYQASALLLFN---SSDRLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 578 ~s~~Q~~ILllFn---~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
+|.-|-.|+.+.- +..++|++||++.+|++...++..+..-.
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3555555554433 24578999999999999998888766543
No 153
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=37.86 E-value=11 Score=30.32 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=22.4
Q ss_pred CChHHHHHHHHHhhhcccccccCCCC
Q 003986 749 PDFKAIKKRIEDLITRDYLERDKSNP 774 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~~~~ 774 (781)
.+...|.+-+..|-++|||+|++..+
T Consensus 36 vS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 36 LSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred CCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 56778999999999999999997543
No 154
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=37.69 E-value=26 Score=35.09 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=42.0
Q ss_pred HHHHhHcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003986 584 SALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 646 (781)
Q Consensus 584 ~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~~ 646 (781)
.||.+|.. ...+|+.||++.+|++...+.+.|..|.. .+++.+.+ ++.|.+...
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~--~G~v~~~~-------~~~Y~lg~~ 81 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA--RSVLTSRA-------DGSYSLGPE 81 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEECT-------TSCEEECHH
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECC-------CCeEEecHH
Confidence 46777764 45899999999999999999999999974 57777653 226777654
No 155
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=37.01 E-value=32 Score=25.45 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=27.1
Q ss_pred HHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 583 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 583 ~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
..|+.++- .++|.+||++.+|++...+..++....
T Consensus 4 ~~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 4 RQVLKLID--EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34444443 357999999999999999999888765
No 156
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=36.92 E-value=41 Score=28.41 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=36.2
Q ss_pred HHHHHHHhHcCCCCcCHHHHHHHh-CCCHHHHHHHHhHhhhccccccccC
Q 003986 581 YQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 581 ~Q~~ILllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
....||.... .++.++.||++.+ |++...+.+.|..|. +.+++.+.
T Consensus 15 ~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le--~~GlI~r~ 61 (107)
T 2hzt_A 15 WKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELE--ADGVINRI 61 (107)
T ss_dssp THHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 3445665555 4679999999999 999999999999997 45777654
No 157
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=36.86 E-value=39 Score=28.86 Aligned_cols=47 Identities=11% Similarity=0.297 Sum_probs=36.2
Q ss_pred HHHHHHHHhHcCCCCcC--HHHHHHHh-CCCHHHHHHHHhHhhhccccccccC
Q 003986 580 TYQASALLLFNSSDRLS--YSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 580 ~~Q~~ILllFn~~~~~t--~~ei~~~t-~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.....||..+.+ ++.+ +.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 27 ~wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 76 (111)
T 3df8_A 27 KYTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLI--DSGLVERR 76 (111)
T ss_dssp TTHHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ccHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 345556766653 4555 99999999 999999999999997 45777654
No 158
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=36.43 E-value=45 Score=31.77 Aligned_cols=49 Identities=10% Similarity=0.219 Sum_probs=39.8
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.+..+..||.++. .+++|..||++.+|++...+.+.|..|. +.+++...
T Consensus 18 ~d~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le--~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLK--EAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 3556677887777 4689999999999999999999999997 45677654
No 159
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=36.29 E-value=24 Score=32.26 Aligned_cols=48 Identities=10% Similarity=0.190 Sum_probs=39.2
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+.....||.++. .++.|+.+|++.+|++...+-++|..|. +.+++...
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~--~aGlV~~~ 104 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLT--EAGLVTPR 104 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 466677887776 4679999999999999999999999997 45777653
No 160
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=35.96 E-value=13 Score=29.90 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHhhhcccccccCCCCCc
Q 003986 749 PDFKAIKKRIEDLITRDYLERDKSNPNM 776 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~~~~~~ 776 (781)
++...|.++|..|.+.|+|+|.+++|..
T Consensus 43 vs~~tV~~~L~~L~~~G~I~~~g~~~~~ 70 (77)
T 1qgp_A 43 TPKKEINRVLYSLAKKGKLQKEAGTPPL 70 (77)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEECSSSCE
T ss_pred cCHHHHHHHHHHHHHCCCEEecCCCCCc
Confidence 7788999999999999999998766543
No 161
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=35.68 E-value=24 Score=28.87 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=32.1
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
+|.-|..|+.++ ..++|.+||++.+|++...++..+....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777666 3568999999999999999998887664
No 162
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=35.63 E-value=22 Score=31.46 Aligned_cols=23 Identities=4% Similarity=0.146 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHhhhcccccccC
Q 003986 749 PDFKAIKKRIEDLITRDYLERDK 771 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~ 771 (781)
.+...|.++|..|+++|||+|..
T Consensus 63 ~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 63 VSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SCHHHHHHHHHHHHHTTSSEECC
T ss_pred cCHHHHHHHHHHHHHCCCEEEEe
Confidence 78999999999999999999954
No 163
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=34.95 E-value=25 Score=31.22 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=32.9
Q ss_pred HhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 587 LLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 587 llFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.+....+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 15 ~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le--~~Glv~r~ 55 (142)
T 1on2_A 15 MLIEEKGYARVSDIAEALAVHPSSVTKMVQKLD--KDEYLIYE 55 (142)
T ss_dssp HHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 334455679999999999999999999999997 34677654
No 164
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=34.85 E-value=28 Score=29.78 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=36.9
Q ss_pred HHHHHHHHhHcCCCCcCHHHHHHHh-CCCHHHHHHHHhHhhhccccccccC
Q 003986 580 TYQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 580 ~~Q~~ILllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.....||..+.+ +++++.+|++.+ |++...+.+.|..|. +.+++.+.
T Consensus 22 ~~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le--~~GlI~r~ 69 (112)
T 1z7u_A 22 KWKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREME--KDGLVHRE 69 (112)
T ss_dssp TTHHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred ccHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 345556655544 679999999999 999999999999997 45777654
No 165
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=34.79 E-value=10 Score=35.54 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=41.0
Q ss_pred EcHHHHHHHHhHcCCCC---cCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDR---LSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~---~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
++..|..||..+...+. +|..+|++.++++...+.+.|..|. +.+++.+.
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 119 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLL--EKGLIERR 119 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHH--HHTSEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCEEec
Confidence 57889989888765543 9999999999999999999999997 34677654
No 166
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=34.72 E-value=40 Score=29.67 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=37.1
Q ss_pred EEcHHHHHHHHhH----cCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003986 577 IVTTYQASALLLF----NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 628 (781)
Q Consensus 577 ~~s~~Q~~ILllF----n~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~ 628 (781)
.++..|..+|..+ ...+.+|..+|++.+|++...+.+.|..|.. .+++.+
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~--~Gli~r 63 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE--KGLVKK 63 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH--CCCEEe
Confidence 4455555555443 3456899999999999999999999999974 466654
No 167
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=34.72 E-value=51 Score=26.64 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=28.4
Q ss_pred cHHHHHHHHh-H--cCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 003986 579 TTYQASALLL-F--NSSDRLSYSEIMTQLNLSDDDVVRLLHSL 618 (781)
Q Consensus 579 s~~Q~~ILll-F--n~~~~~t~~ei~~~t~i~~~~l~~~L~sL 618 (781)
|.-|-.|+.+ | .+..++|+.||++.+|++...++..+..-
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra 62 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKA 62 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555543 3 33357999999999999999888766543
No 168
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=34.69 E-value=35 Score=32.50 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=36.1
Q ss_pred HHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhh
Q 003986 581 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSC 620 (781)
Q Consensus 581 ~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 620 (781)
-|-.|+.+.+++..+|++||++.+++++..+++-|.-|.-
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~ 52 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNI 52 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcC
Confidence 3667899999999999999999999999999999998863
No 169
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=34.34 E-value=38 Score=28.46 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=33.4
Q ss_pred EEcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 577 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 577 ~~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
.+|.-|..||.++- ..+|.+||++.+|++...++..+..+.
T Consensus 34 ~Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 34 RLSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp SCCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35677777777764 468999999999999999998887765
No 170
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=33.84 E-value=24 Score=30.57 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=25.5
Q ss_pred CChHHHHHHHHHhhhcccccccCCCCCcceec
Q 003986 749 PDFKAIKKRIEDLITRDYLERDKSNPNMFRYL 780 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~~~~~~~~Yi 780 (781)
++...+...|..|.++|||+|..+++ .+.|.
T Consensus 40 ~~~~Tvt~~l~rLe~kGlv~R~~~~r-~~~~~ 70 (126)
T 1sd4_A 40 VSDKTIRTLITRLYKKEIIKRYKSEN-IYFYS 70 (126)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEETT-EEEEE
T ss_pred CChhhHHHHHHHHHHCCceEEEeCCC-eEEEE
Confidence 57888999999999999999987543 56663
No 171
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.83 E-value=49 Score=22.65 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=25.1
Q ss_pred HHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 003986 584 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSL 618 (781)
Q Consensus 584 ~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL 618 (781)
.|+.++.+ .+|..+|++.+|++...+.+.+...
T Consensus 13 ~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 13 QLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 45555543 4799999999999999888876543
No 172
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=33.40 E-value=45 Score=32.09 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=39.3
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+..+..||.++. .++.|+.+|++.+|++...+-.+|..|. +.+++...
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le--~~GLV~~~ 61 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILE--EAGLIESR 61 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEE
Confidence 456677777775 4579999999999999999999999997 45777654
No 173
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=33.35 E-value=22 Score=28.46 Aligned_cols=22 Identities=9% Similarity=-0.076 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHhhhccccccc
Q 003986 749 PDFKAIKKRIEDLITRDYLERD 770 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~ 770 (781)
.+...+.+.+..|.+.|+|++.
T Consensus 26 vs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 26 VTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp SCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEe
Confidence 7788899999999999999964
No 174
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=33.32 E-value=16 Score=32.15 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHhhhcccccccC
Q 003986 749 PDFKAIKKRIEDLITRDYLERDK 771 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~ 771 (781)
.+.+.|-+.|+.|.++|||.|..
T Consensus 54 ~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 54 LDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEeeC
Confidence 67888999999999999999853
No 175
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=33.22 E-value=56 Score=25.24 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=27.9
Q ss_pred cHHHHHHHHh-H--cCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 003986 579 TTYQASALLL-F--NSSDRLSYSEIMTQLNLSDDDVVRLLHSL 618 (781)
Q Consensus 579 s~~Q~~ILll-F--n~~~~~t~~ei~~~t~i~~~~l~~~L~sL 618 (781)
|.-|-.|+.+ | .+..+.|++||++.+|++...++..+..-
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4445555533 3 22357899999999999999888766543
No 176
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=32.45 E-value=43 Score=24.38 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHhCCchhHhHHHHHHHHh
Q 003986 441 KKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLT 485 (781)
Q Consensus 441 ~~LakRLL~~~s~~~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~ 485 (781)
+-+.+|++.......+.-..|+..|+..-|......+.+|+.-+-
T Consensus 4 rsViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 4 RSVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 346778887666667777888888888888877888888876553
No 177
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=31.68 E-value=26 Score=28.94 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=35.3
Q ss_pred EcHHHHHHHHhHcC-CCC---cCHHHHHHHhCCCHHHHHHHHhHhhhcccccc
Q 003986 578 VTTYQASALLLFNS-SDR---LSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL 626 (781)
Q Consensus 578 ~s~~Q~~ILllFn~-~~~---~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL 626 (781)
++.-+..||+.+-. .++ +|..+|++.++++...+.+.|..|.. .+++
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~--~Glv 60 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEE--AKMV 60 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH--TTSE
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CcCc
Confidence 35566667766532 233 99999999999999999999999973 3454
No 178
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=31.53 E-value=59 Score=27.32 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=27.1
Q ss_pred EcHHHHHHH-HhH--cCCCCcCHHHHHHHhCCCHHHHHHHHh
Q 003986 578 VTTYQASAL-LLF--NSSDRLSYSEIMTQLNLSDDDVVRLLH 616 (781)
Q Consensus 578 ~s~~Q~~IL-llF--n~~~~~t~~ei~~~t~i~~~~l~~~L~ 616 (781)
+|.-|-.|+ +.| ++..++|++||++.+|++...++..+.
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444444 444 234679999999999999988876554
No 179
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=31.35 E-value=54 Score=29.11 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=36.6
Q ss_pred HHHHHHHhHcCCCCcCHHHHHHHh-CCCHHHHHHHHhHhhhccccccccC
Q 003986 581 YQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 581 ~Q~~ILllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
..+.||..+. .+..++.||++.+ |++...|.+.|..|. +.+++.+.
T Consensus 27 W~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le--~~GLV~R~ 73 (131)
T 4a5n_A 27 WKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELE--ADGIVHRE 73 (131)
T ss_dssp SHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHH--HCCCEEEE
Confidence 3445665555 5689999999999 999999999999997 45777664
No 180
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=30.85 E-value=1.2e+02 Score=21.69 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.4
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHh
Q 003986 593 DRLSYSEIMTQLNLSDDDVVRLLH 616 (781)
Q Consensus 593 ~~~t~~ei~~~t~i~~~~l~~~L~ 616 (781)
..+|..+|++.+|++...+.+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 357999999999999998887653
No 181
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=30.70 E-value=35 Score=33.64 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=34.3
Q ss_pred HHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 583 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 583 ~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+.|+.++. +++.|.++|++.+|++...+..+|..|. +.+++.+.
T Consensus 168 ~~l~~~l~-~~~~t~~~la~~~~l~~~~V~~~l~~L~--~~~~v~~~ 211 (232)
T 2qlz_A 168 AILHYLLL-NGRATVEELSDRLNLKEREVREKISEMA--RFVPVKII 211 (232)
T ss_dssp HHHHHHHH-SSEEEHHHHHHHHTCCHHHHHHHHHHHT--TTSCEEEE
T ss_pred HHHHHHHh-cCCCCHHHHHHHhCcCHHHHHHHHHHHH--hcCCeEEe
Confidence 34444444 4678999999999999999999999996 56777543
No 182
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=30.22 E-value=23 Score=28.68 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHhhhcccccccCCCCCc
Q 003986 749 PDFKAIKKRIEDLITRDYLERDKSNPNM 776 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~~~~~~ 776 (781)
++...|.++|..|.+.|+|++.+..+..
T Consensus 39 vsr~tV~~~L~~Le~~G~I~~~g~~~~~ 66 (81)
T 1qbj_A 39 TPKKEINRVLYSLAKKGKLQKEAGTPPL 66 (81)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEESSSSCE
T ss_pred cCHHHHHHHHHHHHHCCCEEecCCCCCe
Confidence 7788999999999999999987665543
No 183
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=29.86 E-value=60 Score=29.21 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=36.1
Q ss_pred HHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003986 581 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 630 (781)
Q Consensus 581 ~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~ 630 (781)
+-..||.... .+..++.||++.+|++...+.+.|..|. +.+++.+.+
T Consensus 25 w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le--~~GlI~r~~ 71 (146)
T 2f2e_A 25 WSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLV--EHGVMVAVP 71 (146)
T ss_dssp SHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred hHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEEe
Confidence 3344554443 3578999999999999999999999997 457887653
No 184
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=29.75 E-value=47 Score=28.01 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=34.4
Q ss_pred HHHHHhHcCCCCcCHHHHHHHh-CCCHHHHHHHHhHhhhccccccccC
Q 003986 583 ASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 583 ~~ILllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
..||.... .++.++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 28 ~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 72 (107)
T 2fsw_A 28 LLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLC--GKGLIKKK 72 (107)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 34555554 4679999999999 599999999999997 45777654
No 185
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=29.55 E-value=42 Score=33.63 Aligned_cols=37 Identities=14% Similarity=0.344 Sum_probs=29.1
Q ss_pred HHHHHHhH-cCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 003986 582 QASALLLF-NSSDRLSYSEIMTQLNLSDDDVVRLLHSL 618 (781)
Q Consensus 582 Q~~ILllF-n~~~~~t~~ei~~~t~i~~~~l~~~L~sL 618 (781)
...|+-.+ +....+|+++|++.|||..+++..+|+.|
T Consensus 195 ~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l 232 (276)
T 3to7_A 195 SDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL 232 (276)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 33444333 34458999999999999999999999988
No 186
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=28.96 E-value=15 Score=31.78 Aligned_cols=31 Identities=29% Similarity=0.553 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHhhhcccccccCCCCCcceec
Q 003986 749 PDFKAIKKRIEDLITRDYLERDKSNPNMFRYL 780 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~~~~~~~~Yi 780 (781)
++...+.+.+..|.++|||+|.++|+ .+.|+
T Consensus 40 ~s~~tv~~~l~~L~~~Glv~r~~~~r-r~~~~ 70 (123)
T 1okr_A 40 WSPKTIRTLITRLYKKGFIDRKKDNK-IFQYY 70 (123)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEEEETT-EEEEE
T ss_pred CcHhhHHHHHHHHHHCCCeEEEecCC-eEEEE
Confidence 56888999999999999999987643 45553
No 187
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=28.36 E-value=43 Score=29.73 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHhhhcccccccCCCCCccee
Q 003986 749 PDFKAIKKRIEDLITRDYLERDKSNPNMFRY 779 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~~~~~~~~Y 779 (781)
.+...|...|+.|.++|||+|..++ ..+.|
T Consensus 40 ~~~~Tvt~~l~rLe~kGlv~r~~~~-r~~~~ 69 (138)
T 2g9w_A 40 LAYTTVMAVLQRLAKKNLVLQIRDD-RAHRY 69 (138)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEC----CCEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEEecC-CeEEE
Confidence 5788899999999999999998754 45666
No 188
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=27.42 E-value=60 Score=28.66 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=37.3
Q ss_pred cHHHHHHHHhHcCCCCcCHHHHHHHh-CCCHHHHHHHHhHhhhccccccccC
Q 003986 579 TTYQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 579 s~~Q~~ILllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
+.+...||..+. .+..++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le--~~GlV~r~ 82 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALE--QDGFLNRV 82 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHH--HHTCEEEE
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCcEEEE
Confidence 344455665555 4679999999999 799999999999997 45777654
No 189
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=27.15 E-value=81 Score=25.60 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=28.3
Q ss_pred EcHHHHHHHHh-HcCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 003986 578 VTTYQASALLL-FNSSDRLSYSEIMTQLNLSDDDVVRLLHSL 618 (781)
Q Consensus 578 ~s~~Q~~ILll-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~sL 618 (781)
++.-|-.|+.+ +- .++|+.||++.+|++...++..+..-
T Consensus 38 L~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 38 LSAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555554 43 35799999999999999888776544
No 190
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=26.53 E-value=54 Score=26.70 Aligned_cols=28 Identities=4% Similarity=0.182 Sum_probs=23.5
Q ss_pred CChHHHHHHHHHhhhcccccccCCCCCc
Q 003986 749 PDFKAIKKRIEDLITRDYLERDKSNPNM 776 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~~~~~~~ 776 (781)
.+...+-+.+..|.+.|++++..+.+..
T Consensus 50 is~~tvs~~l~~L~~~glv~~~~~~r~~ 77 (99)
T 3cuo_A 50 LSASATSQHLARMRDEGLIDSQRDAQRI 77 (99)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEECSSCE
T ss_pred cCHHHHHHHHHHHHHCCCEEEEecCCEE
Confidence 7788899999999999999998754433
No 191
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=26.09 E-value=1e+02 Score=31.73 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=37.6
Q ss_pred HHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccc
Q 003986 580 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 627 (781)
Q Consensus 580 ~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~ 627 (781)
.-+..||.++++...+|.++|++.+|++...+.+.|..|.. .+++.
T Consensus 5 ~r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~--~G~~i 50 (321)
T 1bia_A 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRD--WGVDV 50 (321)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHH--TTCCC
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHh--CCCcE
Confidence 34566787888888899999999999999999999999964 34443
No 192
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.94 E-value=92 Score=23.34 Aligned_cols=39 Identities=26% Similarity=0.163 Sum_probs=28.3
Q ss_pred EcHHHHHHHHh-HcCCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 003986 578 VTTYQASALLL-FNSSDRLSYSEIMTQLNLSDDDVVRLLHSL 618 (781)
Q Consensus 578 ~s~~Q~~ILll-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~sL 618 (781)
+|.-|-.|+.+ +- ..+|.+||++.+|++...+...+...
T Consensus 16 L~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 16 LTTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555556544 43 35899999999999999888776654
No 193
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=25.91 E-value=1.2e+02 Score=25.05 Aligned_cols=44 Identities=25% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 582 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 582 Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
-+.||..... + ++..+|+..+|++...+.+.+..|. +.+++.+.
T Consensus 10 i~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~--~~GLI~~~ 53 (95)
T 1r7j_A 10 IQAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLM--DLEIIRQE 53 (95)
T ss_dssp HHHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 3456666664 3 8999999999999999999999997 35677654
No 194
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=24.72 E-value=1.9e+02 Score=22.72 Aligned_cols=59 Identities=7% Similarity=0.182 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhhccCCh-hHHHHHHHHHHHHHhcCCCCC
Q 003986 391 AELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDK-DLFAEFYRKKLARRLLFDKSA 453 (781)
Q Consensus 391 ~e~La~y~D~~lk~~~~~~~~~~e~~~~l~~i~~lf~~l~~K-D~F~~~Y~~~LakRLL~~~s~ 453 (781)
-+++.++++..+.++ .+++++...++.+-..+..+... +.|...|-..+.+-|+.+.++
T Consensus 7 C~~iv~~ve~~l~~~----~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~~~iI~~l~~~~~P 66 (78)
T 1nkl_A 7 CRKIIQKLEDMVGPQ----PNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKKP 66 (78)
T ss_dssp HHHHHHHHHHHHCSS----CCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcC----CcHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 467888999998753 36899999999988888775444 799999999999998876543
No 195
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=24.67 E-value=37 Score=29.27 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHhhhcccc
Q 003986 750 DFKAIKKRIEDLITRDYL 767 (781)
Q Consensus 750 ~~~~ik~~ie~Li~~eyl 767 (781)
+.++|.+.|+.||.+||.
T Consensus 23 t~eqI~kQV~Yll~qGw~ 40 (110)
T 1svd_M 23 NAERIRAQIKYAIAQGWS 40 (110)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHCCCe
Confidence 779999999999999986
No 196
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=24.57 E-value=35 Score=29.36 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHhhhcccc
Q 003986 750 DFKAIKKRIEDLITRDYL 767 (781)
Q Consensus 750 ~~~~ik~~ie~Li~~eyl 767 (781)
+.++|.+.|+.||.+||.
T Consensus 21 t~eqI~kQI~Yll~qGw~ 38 (109)
T 1rbl_M 21 SDRQIAAQIEYMIEQGFH 38 (109)
T ss_dssp CHHHHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHHHHCCCE
Confidence 789999999999999986
No 197
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=23.61 E-value=57 Score=32.85 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=22.4
Q ss_pred CCCCcCHHHHHHHhCCCHHHHHHHHhHh
Q 003986 591 SSDRLSYSEIMTQLNLSDDDVVRLLHSL 618 (781)
Q Consensus 591 ~~~~~t~~ei~~~t~i~~~~l~~~L~sL 618 (781)
..+.+|+++|++.|||..+++..+|+.|
T Consensus 211 ~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 211 NDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp -----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 3458999999999999999999999988
No 198
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=23.58 E-value=48 Score=28.85 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.9
Q ss_pred CChHHHHHHHHHhhhccccccc
Q 003986 749 PDFKAIKKRIEDLITRDYLERD 770 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r~ 770 (781)
.+...+-+.|..|.++|||+|.
T Consensus 65 ~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 65 YKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp SHHHHHHHHHHHHHHTTSSCCB
T ss_pred CCHHHHHHHHHHHHHCCCEEec
Confidence 6788899999999999999994
No 199
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.33 E-value=41 Score=30.85 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=38.7
Q ss_pred hcceeeeecccccccChHHHHHHHHHHhccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhcCCCChHHHHHHH
Q 003986 679 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKVHNTLFSFLFFFFVFVCESFVFLNLTTLALNEMLILQPDFKAIKKRI 758 (781)
Q Consensus 679 I~A~IVRiMK~~k~~~~~~L~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~i 758 (781)
+|-.|.+.+.....++..+|-.. .. .+...+.++|
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~--------lg-------------------------------------~s~~tv~~rl 38 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKK--------VG-------------------------------------LSTTPCWRRI 38 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHH--------HT-------------------------------------CCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH--------HC-------------------------------------cCHHHHHHHH
Confidence 45668888888888988888543 34 8899999999
Q ss_pred HHhhhccccccc
Q 003986 759 EDLITRDYLERD 770 (781)
Q Consensus 759 e~Li~~eyl~r~ 770 (781)
..|.++|+|+|-
T Consensus 39 ~~L~~~g~i~~~ 50 (162)
T 3i4p_A 39 QKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHTTSSCCC
T ss_pred HHHHHCCCeeec
Confidence 999999999974
No 200
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=21.91 E-value=71 Score=32.16 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=24.4
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 594 RLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 594 ~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
.+|++||++.|||..+++..+|+.|-
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l~ 237 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYLN 237 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 79999999999999999999999883
No 201
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=21.79 E-value=75 Score=26.21 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=19.4
Q ss_pred CChHHHHHHHHHhhhcccccc
Q 003986 749 PDFKAIKKRIEDLITRDYLER 769 (781)
Q Consensus 749 ~~~~~ik~~ie~Li~~eyl~r 769 (781)
.+...+.++|..|.++|||+|
T Consensus 48 l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 48 LPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEE
Confidence 778889999999999999994
No 202
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=21.75 E-value=1.1e+02 Score=29.87 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=33.5
Q ss_pred HHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 581 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 581 ~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
+...+|.++-++..+|+++|+..+|.+.+++.+.|..+-
T Consensus 23 ~~~~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 23 LLVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 344566777788899999999999999999999999884
No 203
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=20.61 E-value=55 Score=32.95 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=25.0
Q ss_pred HHHHHhHcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhh
Q 003986 583 ASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLS 619 (781)
Q Consensus 583 ~~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 619 (781)
..|+-.+.+ .+.+|++||++.|||..+++..+|+.|-
T Consensus 196 ~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l~ 233 (278)
T 2pq8_A 196 WVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSLN 233 (278)
T ss_dssp HHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHCC
Confidence 344444433 3589999999999999999999999883
No 204
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=20.40 E-value=2.1e+02 Score=27.64 Aligned_cols=50 Identities=20% Similarity=0.067 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003986 578 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 629 (781)
Q Consensus 578 ~s~~Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~ 629 (781)
.+..|..|+-+......+|..++++.+|.+....+..|..+. +.+++..+
T Consensus 152 ~~~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e--~~G~l~~D 201 (218)
T 3cuq_B 152 EEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAE--KMGHLCRD 201 (218)
T ss_dssp GGGGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred hHHHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HcCCEEEE
Confidence 346889998888878899999999999999999999999886 45777765
No 205
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=20.23 E-value=1.3e+02 Score=32.06 Aligned_cols=65 Identities=8% Similarity=0.113 Sum_probs=43.9
Q ss_pred HHHHHHhHcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCC---CCCCCCCeEEEccCCC
Q 003986 582 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNT---KTISPTDHFEFNSKFT 648 (781)
Q Consensus 582 Q~~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~---~~i~~~~~f~lN~~F~ 648 (781)
...||-++..+..+|..||++.||++...+.+.+..|.. .+++...... ..=.+...+.+|.+..
T Consensus 18 ~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~--~g~i~~~~~~~~~~~GR~~~~l~~~~~~~ 85 (406)
T 1z6r_A 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLE--AHLVQELEIKEAGNRGRPAVGLVVETEAW 85 (406)
T ss_dssp HHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEC-------------CEEECCTTC
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCcEEeecccCCCCCCCCCeEEEEcCCcc
Confidence 345777777788999999999999999999999999974 4666553211 1112345577777643
No 206
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=20.22 E-value=91 Score=29.24 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=32.7
Q ss_pred HHHHHHHhHcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhh
Q 003986 581 YQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSC 620 (781)
Q Consensus 581 ~Q~~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 620 (781)
-+..||.++.+ ...+|..||++.+|++...+.+.|..|..
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34556766764 45699999999999999999999999964
No 207
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=20.15 E-value=1e+02 Score=32.20 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=38.3
Q ss_pred HHHhHcC-CCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEcc
Q 003986 585 ALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 645 (781)
Q Consensus 585 ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~kiL~~~~~~~~i~~~~~f~lN~ 645 (781)
|.-.+.+ ..++|++||++.+|+++..+.+.|..|+. .+++... ++.|..+.
T Consensus 40 ifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~--~g~l~~~--------~~~y~~t~ 91 (363)
T 3dp7_A 40 IFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLT--IGTILLE--------EDRYVLAK 91 (363)
T ss_dssp HHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEE--------TTEEEECH
T ss_pred HHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCeEec--------CCEEeccc
Confidence 3344445 46899999999999999999999999985 4777653 35666554
Done!