Query 003987
Match_columns 781
No_of_seqs 388 out of 3225
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:32:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s28_A Sucrose synthase 1; gly 100.0 9E-170 3E-174 1517.7 58.6 762 3-769 5-766 (816)
2 2r60_A Glycosyl transferase, g 100.0 1.3E-45 4.5E-50 421.7 35.2 435 276-771 5-462 (499)
3 3c48_A Predicted glycosyltrans 100.0 1.7E-43 5.9E-48 395.6 36.0 410 277-779 19-436 (438)
4 3fro_A GLGA glycogen synthase; 100.0 3.7E-43 1.3E-47 390.6 36.7 405 278-776 2-434 (439)
5 3vue_A GBSS-I, granule-bound s 100.0 9.4E-41 3.2E-45 386.9 30.7 328 406-772 152-511 (536)
6 3okp_A GDP-mannose-dependent a 100.0 4.3E-40 1.5E-44 361.2 33.6 369 277-772 3-379 (394)
7 2jjm_A Glycosyl transferase, g 100.0 2.3E-39 7.8E-44 358.0 34.8 360 299-773 24-386 (394)
8 2qzs_A Glycogen synthase; glyc 100.0 1.2E-39 4E-44 370.5 31.6 430 279-774 1-478 (485)
9 1rzu_A Glycogen synthase 1; gl 100.0 9E-40 3.1E-44 371.4 29.9 433 279-774 1-477 (485)
10 2iw1_A Lipopolysaccharide core 100.0 3.3E-39 1.1E-43 352.2 18.7 366 279-771 1-370 (374)
11 2gek_A Phosphatidylinositol ma 100.0 1.5E-38 5.1E-43 350.8 23.6 362 276-770 18-381 (406)
12 2x6q_A Trehalose-synthase TRET 100.0 6.8E-38 2.3E-42 348.7 29.1 371 278-771 40-413 (416)
13 3oy2_A Glycosyltransferase B73 100.0 1.1E-37 3.9E-42 346.1 20.4 358 279-769 1-391 (413)
14 2iuy_A Avigt4, glycosyltransfe 100.0 1.6E-36 5.5E-41 328.7 20.1 309 279-770 4-333 (342)
15 2x0d_A WSAF; GT4 family, trans 100.0 4.4E-33 1.5E-37 312.7 19.4 353 276-769 44-410 (413)
16 1f0k_A MURG, UDP-N-acetylgluco 100.0 6.9E-30 2.4E-34 278.4 27.0 340 278-773 6-358 (364)
17 2hy7_A Glucuronosyltransferase 100.0 2.6E-31 9E-36 297.2 8.6 245 407-769 124-380 (406)
18 3nb0_A Glycogen [starch] synth 100.0 2.4E-29 8.3E-34 290.8 21.8 336 406-770 180-635 (725)
19 2vsy_A XCC0866; transferase, g 100.0 3.7E-28 1.3E-32 281.4 28.0 175 561-771 368-562 (568)
20 1uqt_A Alpha, alpha-trehalose- 100.0 1.8E-27 6E-32 272.0 26.2 312 406-772 122-454 (482)
21 3beo_A UDP-N-acetylglucosamine 100.0 4.4E-28 1.5E-32 264.9 17.4 284 394-769 85-373 (375)
22 2bfw_A GLGA glycogen synthase; 100.0 2.9E-27 1E-31 236.2 20.4 187 524-755 2-200 (200)
23 1vgv_A UDP-N-acetylglucosamine 99.9 1E-27 3.5E-32 263.1 15.5 292 394-771 76-375 (384)
24 3qhp_A Type 1 capsular polysac 99.9 1.4E-25 4.6E-30 217.7 18.8 160 572-759 2-163 (166)
25 3t5t_A Putative glycosyltransf 99.9 1.1E-24 3.6E-29 247.8 25.2 322 394-770 135-471 (496)
26 1v4v_A UDP-N-acetylglucosamine 99.9 3E-24 1E-28 235.4 18.8 279 395-770 82-366 (376)
27 2xci_A KDO-transferase, 3-deox 99.9 1.5E-23 5.1E-28 232.1 18.4 206 470-755 149-365 (374)
28 2f9f_A First mannosyl transfer 99.9 1.6E-23 5.3E-28 206.8 14.7 151 569-745 20-173 (177)
29 3rhz_A GTF3, nucleotide sugar 99.8 2.9E-19 9.8E-24 195.3 19.3 251 405-768 72-337 (339)
30 3otg_A CALG1; calicheamicin, T 99.8 1.6E-18 5.4E-23 191.9 24.8 162 570-770 241-408 (412)
31 3s2u_A UDP-N-acetylglucosamine 99.8 1.1E-16 3.6E-21 176.5 29.4 346 277-772 1-358 (365)
32 2iyf_A OLED, oleandomycin glyc 99.8 4.4E-17 1.5E-21 181.9 25.4 161 570-769 231-398 (430)
33 3tsa_A SPNG, NDP-rhamnosyltran 99.7 1.1E-17 3.7E-22 184.3 13.9 161 571-769 218-387 (391)
34 3dzc_A UDP-N-acetylglucosamine 99.7 4.6E-17 1.6E-21 181.5 18.4 276 389-746 96-378 (396)
35 4fzr_A SSFS6; structural genom 99.7 1.1E-17 3.7E-22 185.1 11.7 149 570-758 226-390 (398)
36 3oti_A CALG3; calicheamicin, T 99.7 5.3E-16 1.8E-20 171.7 19.3 157 570-769 231-396 (398)
37 3ia7_A CALG4; glycosysltransfe 99.7 8.9E-16 3E-20 168.8 20.5 159 570-770 230-398 (402)
38 3ot5_A UDP-N-acetylglucosamine 99.7 9.5E-16 3.2E-20 171.3 19.6 269 389-746 99-372 (403)
39 3rsc_A CALG2; TDP, enediyne, s 99.6 2.8E-14 9.6E-19 158.2 25.1 158 570-769 246-412 (415)
40 2p6p_A Glycosyl transferase; X 99.6 1.7E-14 5.6E-19 158.6 21.8 139 572-750 211-362 (384)
41 2yjn_A ERYCIII, glycosyltransf 99.5 5.8E-13 2E-17 149.6 17.3 158 572-771 268-436 (441)
42 4hwg_A UDP-N-acetylglucosamine 99.4 1.2E-12 4.1E-17 145.3 14.2 263 390-744 80-351 (385)
43 2c4m_A Glycogen phosphorylase; 99.4 3.6E-12 1.2E-16 150.1 18.3 331 407-768 289-719 (796)
44 1l5w_A Maltodextrin phosphoryl 99.4 6.8E-12 2.3E-16 147.8 18.7 333 407-772 299-730 (796)
45 3h4t_A Glycosyltransferase GTF 99.4 3.3E-11 1.1E-15 134.0 23.4 137 570-747 220-363 (404)
46 2iya_A OLEI, oleandomycin glyc 99.3 1.7E-10 5.8E-15 128.5 27.0 143 570-749 254-403 (424)
47 2gj4_A Glycogen phosphorylase, 99.3 2E-11 7E-16 144.2 18.4 261 465-759 428-744 (824)
48 3q3e_A HMW1C-like glycosyltran 99.3 4.6E-11 1.6E-15 138.2 20.0 186 563-772 432-627 (631)
49 1iir_A Glycosyltransferase GTF 99.3 3.6E-10 1.2E-14 125.8 22.8 136 571-748 238-381 (415)
50 1rrv_A Glycosyltransferase GTF 99.2 5E-10 1.7E-14 124.6 21.4 135 571-747 237-381 (416)
51 4amg_A Snogd; transferase, pol 99.2 6.2E-11 2.1E-15 130.3 12.7 157 571-768 237-398 (400)
52 2o6l_A UDP-glucuronosyltransfe 99.0 6.6E-10 2.3E-14 108.0 9.9 134 571-744 21-163 (170)
53 4gyw_A UDP-N-acetylglucosamine 97.9 0.00013 4.6E-09 87.0 16.6 183 560-769 513-702 (723)
54 2pq6_A UDP-glucuronosyl/UDP-gl 97.8 0.0098 3.3E-07 67.3 30.3 95 640-750 352-453 (482)
55 2vch_A Hydroquinone glucosyltr 97.8 0.0087 3E-07 67.8 28.5 65 660-729 351-427 (480)
56 2c1x_A UDP-glucose flavonoid 3 97.8 0.0021 7.3E-08 72.4 22.8 95 640-750 324-426 (456)
57 2acv_A Triterpene UDP-glucosyl 97.6 0.012 4.1E-07 66.3 26.7 87 641-742 332-433 (463)
58 3hbf_A Flavonoid 3-O-glucosylt 97.6 0.0068 2.3E-07 68.3 24.5 93 640-749 326-427 (454)
59 3hbm_A UDP-sugar hydrolase; PS 97.4 0.0053 1.8E-07 64.8 18.5 94 572-696 158-251 (282)
60 1psw_A ADP-heptose LPS heptosy 97.4 0.0074 2.5E-07 64.6 19.3 100 572-695 181-286 (348)
61 3tov_A Glycosyl transferase fa 96.5 0.15 5.3E-06 54.9 20.1 102 569-695 182-286 (349)
62 1ygp_A Yeast glycogen phosphor 95.6 0.11 3.6E-06 61.9 14.3 142 565-715 588-761 (879)
63 2gt1_A Lipopolysaccharide hept 87.6 1.6 5.5E-05 45.9 9.2 98 572-695 179-278 (326)
64 2jzc_A UDP-N-acetylglucosamine 84.3 0.68 2.3E-05 46.9 4.0 64 657-728 124-196 (224)
65 3l7i_A Teichoic acid biosynthe 66.9 21 0.00072 42.0 10.9 65 657-729 608-681 (729)
66 3heb_A Response regulator rece 66.4 50 0.0017 29.4 11.3 109 604-729 5-133 (152)
67 1k68_A Phytochrome response re 65.3 64 0.0022 27.7 11.5 109 604-729 3-129 (140)
68 1uan_A Hypothetical protein TT 64.5 13 0.00044 37.3 7.2 23 391-416 82-104 (227)
69 3h5i_A Response regulator/sens 63.9 75 0.0026 27.8 12.0 107 604-729 6-122 (140)
70 3kht_A Response regulator; PSI 59.6 57 0.0019 28.6 10.2 111 603-730 5-127 (144)
71 1k66_A Phytochrome response re 59.6 76 0.0026 27.6 11.0 110 603-729 6-136 (149)
72 2dvz_A BUGE, putative exported 57.8 1.1E+02 0.0037 32.1 13.4 148 573-746 116-280 (314)
73 2pln_A HP1043, response regula 57.4 52 0.0018 28.6 9.4 106 602-729 17-131 (137)
74 2zay_A Response regulator rece 57.3 67 0.0023 28.2 10.3 109 603-730 8-127 (147)
75 4b4o_A Epimerase family protei 56.5 6.1 0.00021 40.6 3.2 33 279-340 1-33 (298)
76 2ixd_A LMBE-related protein; h 54.7 23 0.00078 35.9 7.1 24 391-417 84-107 (242)
77 3grc_A Sensor protein, kinase; 51.2 1.2E+02 0.0041 26.2 12.1 109 603-730 6-126 (140)
78 2f5x_A BUGD; periplasmic bindi 50.8 1.7E+02 0.0059 30.4 13.5 148 573-746 112-276 (312)
79 2qvg_A Two component response 50.5 1.2E+02 0.0041 26.2 10.7 107 604-727 8-131 (143)
80 3ius_A Uncharacterized conserv 50.3 6.7 0.00023 39.9 2.3 36 276-341 3-38 (286)
81 3h1g_A Chemotaxis protein CHEY 47.8 1.3E+02 0.0045 25.7 10.9 108 604-729 6-125 (129)
82 3gt7_A Sensor protein; structu 47.7 1.4E+02 0.0049 26.5 11.0 110 603-731 7-127 (154)
83 2phj_A 5'-nucleotidase SURE; S 47.7 1.1E+02 0.0036 31.3 10.7 38 278-342 1-38 (251)
84 1j9j_A Stationary phase surviV 46.5 1.9E+02 0.0065 29.3 12.4 35 404-438 83-128 (247)
85 2qpq_A Protein BUG27; alpha/be 46.4 93 0.0032 32.3 10.5 147 574-746 104-267 (301)
86 1i3c_A Response regulator RCP1 43.5 1.7E+02 0.0058 25.7 11.0 110 603-729 8-135 (149)
87 3ilh_A Two component response 42.9 1.6E+02 0.0053 25.4 10.2 110 603-729 9-137 (146)
88 4e7p_A Response regulator; DNA 42.9 1.3E+02 0.0044 26.5 9.8 110 604-730 21-139 (150)
89 3cg4_A Response regulator rece 42.4 1.6E+02 0.0056 25.2 12.7 108 603-729 7-125 (142)
90 3to5_A CHEY homolog; alpha(5)b 42.3 1.9E+02 0.0066 26.0 11.3 110 603-730 12-132 (134)
91 4dad_A Putative pilus assembly 41.0 87 0.003 27.4 8.2 111 603-730 20-140 (146)
92 2vzf_A NADH-dependent FMN redu 40.9 18 0.00061 35.0 3.6 37 277-331 1-38 (197)
93 3eul_A Possible nitrate/nitrit 40.3 1.6E+02 0.0055 25.9 10.0 112 602-730 14-134 (152)
94 4gi5_A Quinone reductase; prot 39.8 32 0.0011 35.8 5.5 36 278-331 22-57 (280)
95 3hzh_A Chemotaxis response reg 38.8 1.4E+02 0.0047 26.7 9.3 107 604-729 37-155 (157)
96 3l4b_C TRKA K+ channel protien 38.5 61 0.0021 31.5 7.2 30 406-435 64-96 (218)
97 2qzj_A Two-component response 38.1 1.9E+02 0.0065 24.9 10.0 108 603-729 4-119 (136)
98 3kcn_A Adenylate cyclase homol 38.1 2.1E+02 0.0071 25.1 12.7 106 604-729 5-121 (151)
99 3lkv_A Uncharacterized conserv 37.7 3.4E+02 0.012 27.5 13.8 114 587-716 126-244 (302)
100 3n53_A Response regulator rece 36.5 2.1E+02 0.007 24.6 10.6 75 655-729 35-120 (140)
101 2j48_A Two-component sensor ki 35.4 1.2E+02 0.004 24.8 7.7 105 605-728 3-115 (119)
102 2qr3_A Two-component system re 35.3 1.7E+02 0.0058 25.0 9.1 107 604-729 4-124 (140)
103 3m2p_A UDP-N-acetylglucosamine 35.2 21 0.00072 36.6 3.3 35 277-340 1-35 (311)
104 4fle_A Esterase; structural ge 35.1 1.7E+02 0.006 27.0 9.7 32 405-437 60-91 (202)
105 3jte_A Response regulator rece 34.8 2.2E+02 0.0075 24.5 11.3 107 604-729 4-121 (143)
106 3cg0_A Response regulator rece 34.2 2.2E+02 0.0075 24.3 10.5 108 603-729 9-126 (140)
107 3slg_A PBGP3 protein; structur 33.9 1.1E+02 0.0039 31.8 8.9 20 318-341 39-59 (372)
108 3p0r_A Azoreductase; structura 33.0 41 0.0014 33.0 4.8 39 277-331 3-43 (211)
109 4egb_A DTDP-glucose 4,6-dehydr 32.7 2.2E+02 0.0074 29.2 10.8 14 318-331 39-52 (346)
110 3hdv_A Response regulator; PSI 32.0 2.4E+02 0.0081 24.0 11.7 108 603-729 7-125 (136)
111 3cnb_A DNA-binding response re 31.9 2.4E+02 0.0082 24.0 10.0 110 603-730 8-129 (143)
112 2fzv_A Putative arsenical resi 31.4 29 0.001 36.0 3.6 52 258-331 42-93 (279)
113 2rdm_A Response regulator rece 31.0 2.4E+02 0.0081 23.7 11.4 107 603-730 5-122 (132)
114 2q62_A ARSH; alpha/beta, flavo 30.7 41 0.0014 34.1 4.5 37 277-331 33-69 (247)
115 1d4a_A DT-diaphorase, quinone 30.6 58 0.002 33.3 5.7 37 277-331 1-37 (273)
116 3ew7_A LMO0794 protein; Q8Y8U8 29.9 30 0.001 33.1 3.2 19 318-340 15-33 (221)
117 2e6c_A 5'-nucleotidase SURE; S 29.6 2.4E+02 0.0082 28.5 9.9 34 405-438 85-129 (244)
118 2qsj_A DNA-binding response re 29.2 2.4E+02 0.0082 24.7 9.2 110 603-730 3-123 (154)
119 3h2s_A Putative NADH-flavin re 28.4 33 0.0011 33.0 3.2 19 318-340 15-33 (224)
120 3lte_A Response regulator; str 28.4 2.7E+02 0.0091 23.4 10.4 108 603-729 6-123 (132)
121 3hdg_A Uncharacterized protein 28.3 2.6E+02 0.0089 23.8 9.1 108 603-729 7-123 (137)
122 1jwq_A N-acetylmuramoyl-L-alan 28.0 57 0.0019 31.4 4.7 29 308-341 26-55 (179)
123 3lua_A Response regulator rece 27.8 1.7E+02 0.0059 25.1 7.8 107 604-729 5-125 (140)
124 3t6k_A Response regulator rece 27.2 3E+02 0.01 23.6 11.0 108 604-730 5-123 (136)
125 1l5x_A SurviVal protein E; str 25.9 3.4E+02 0.012 28.0 10.5 34 405-438 82-127 (280)
126 2x4g_A Nucleoside-diphosphate- 25.9 43 0.0015 34.5 3.8 20 318-341 28-47 (342)
127 1rcu_A Conserved hypothetical 25.4 39 0.0013 33.2 3.1 70 657-728 110-192 (195)
128 1qkk_A DCTD, C4-dicarboxylate 25.3 3.4E+02 0.012 23.7 12.1 107 604-729 4-119 (155)
129 2qxy_A Response regulator; reg 25.3 1.8E+02 0.0063 25.0 7.5 107 604-729 5-119 (142)
130 3f6c_A Positive transcription 25.1 3.1E+02 0.011 23.1 10.2 107 604-729 2-118 (134)
131 1kjq_A GART 2, phosphoribosylg 25.0 2.9E+02 0.0099 29.0 10.3 18 318-339 25-42 (391)
132 3nhm_A Response regulator; pro 24.7 3.1E+02 0.011 23.0 12.4 76 655-730 36-121 (133)
133 3eod_A Protein HNR; response r 24.1 3.2E+02 0.011 22.9 9.0 108 603-729 7-124 (130)
134 3i42_A Response regulator rece 23.8 3.2E+02 0.011 22.8 10.8 107 604-729 4-120 (127)
135 2d59_A Hypothetical protein PH 23.4 4.1E+02 0.014 23.9 9.7 14 318-331 40-53 (144)
136 1y81_A Conserved hypothetical 23.2 4.1E+02 0.014 23.9 9.7 19 318-340 32-50 (138)
137 1dbw_A Transcriptional regulat 23.1 3.3E+02 0.011 22.7 11.2 108 603-729 3-119 (126)
138 3c24_A Putative oxidoreductase 23.0 51 0.0017 33.6 3.6 35 276-339 9-43 (286)
139 3lcr_A Tautomycetin biosynthet 22.9 4.2E+02 0.014 26.9 10.8 38 391-429 132-169 (319)
140 2r6j_A Eugenol synthase 1; phe 22.8 62 0.0021 33.1 4.3 20 318-341 26-45 (318)
141 3c1o_A Eugenol synthase; pheny 22.8 58 0.002 33.3 4.0 20 318-341 19-38 (321)
142 2gkg_A Response regulator homo 22.7 3.2E+02 0.011 22.4 10.9 106 604-729 6-123 (127)
143 3rpe_A MDAB, modulator of drug 22.4 95 0.0032 30.8 5.3 45 272-331 20-64 (218)
144 3e48_A Putative nucleoside-dip 22.3 2.5E+02 0.0084 27.9 8.7 20 318-341 15-35 (289)
145 1hdo_A Biliverdin IX beta redu 22.3 54 0.0019 30.8 3.4 20 318-341 18-37 (206)
146 3dqp_A Oxidoreductase YLBE; al 22.3 39 0.0013 32.6 2.4 20 318-341 15-34 (219)
147 3gl9_A Response regulator; bet 22.1 3.5E+02 0.012 22.6 10.3 106 605-729 4-120 (122)
148 1p2f_A Response regulator; DRR 22.0 2.3E+02 0.008 26.7 8.1 107 604-731 3-117 (220)
149 3dhn_A NAD-dependent epimerase 21.7 40 0.0014 32.5 2.4 20 318-341 19-38 (227)
150 3tqq_A Methionyl-tRNA formyltr 21.7 1.6E+02 0.0053 31.0 7.1 18 319-339 17-34 (314)
151 3bfv_A CAPA1, CAPB2, membrane 21.5 75 0.0026 32.3 4.5 34 187-222 6-39 (271)
152 2duw_A Putative COA-binding pr 21.1 2.9E+02 0.0098 25.1 8.0 46 266-340 4-49 (145)
153 3ph3_A Ribose-5-phosphate isom 20.9 69 0.0023 30.7 3.6 35 274-331 16-50 (169)
154 3vps_A TUNA, NAD-dependent epi 20.8 54 0.0019 33.3 3.3 21 318-342 22-42 (321)
155 3hv2_A Response regulator/HD d 20.8 4.2E+02 0.014 23.0 9.8 107 604-729 15-131 (153)
156 3hn2_A 2-dehydropantoate 2-red 20.7 63 0.0022 33.5 3.8 19 318-340 16-34 (312)
157 3r6d_A NAD-dependent epimerase 20.5 54 0.0019 31.6 3.0 19 318-340 20-39 (221)
158 3i6i_A Putative leucoanthocyan 20.5 52 0.0018 34.3 3.1 20 318-341 25-44 (346)
159 3i83_A 2-dehydropantoate 2-red 20.4 54 0.0019 34.1 3.2 19 318-340 16-34 (320)
160 3uqz_A DNA processing protein 20.4 1E+02 0.0035 32.1 5.1 126 584-724 143-279 (288)
161 3sc6_A DTDP-4-dehydrorhamnose 20.4 26 0.0009 35.3 0.7 34 277-339 4-37 (287)
162 1kjn_A MTH0777; hypotethical p 20.3 90 0.0031 29.3 4.1 35 278-331 6-40 (157)
163 3cz5_A Two-component response 20.2 4.3E+02 0.015 22.9 9.9 110 603-729 5-123 (153)
164 4g65_A TRK system potassium up 20.2 91 0.0031 34.5 5.1 142 574-729 211-365 (461)
165 2cp8_A NEXT to BRCA1 gene 1 pr 20.2 84 0.0029 24.3 3.3 20 219-238 2-21 (54)
No 1
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=9.1e-170 Score=1517.66 Aligned_cols=762 Identities=67% Similarity=1.117 Sum_probs=708.9
Q ss_pred CCCCCCCcchHHHHHHHHhHhHHHHHHHHHHHHhcCCcccchhhHHHHHHhhhcCcccccccCCCcHHHHHhhcceeeec
Q 003987 3 APKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVL 82 (781)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 82 (781)
+++|+|++||+|+++++|++||++|++||++|+++||++|++|||+++|+++|+ .+++++.+|+||++|++||||||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 82 (816)
T 3s28_A 5 ERMITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPE--QTRKKLEGGPFFDLLKSTQEAIVL 82 (816)
T ss_dssp ----------------------CTTHHHHHHHHHHHTCSEEEEHHHHHHTTTTT--SCGGGCCCSTHHHHHHTEEEEEEC
T ss_pred ccccccchhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH--hhhcccccCcHHHHHHhhhheeec
Confidence 368999999999999999999999999999999999999999999999999993 466888999999999999999999
Q ss_pred CCeEEEEEcCCCceEEEEEEecCcceeeecChHHHhhhcchhcccccCCCceeeeeccccccCCCCCCCCCCCCchhhhh
Q 003987 83 PPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDASFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFL 162 (781)
Q Consensus 83 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (781)
|||||||||||||+|||||||++||+||+|||+|||+|||+|||++.+++++||+||+|||++||+|++|+||||||+||
T Consensus 83 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (816)
T 3s28_A 83 PPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEELVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFL 162 (816)
T ss_dssp SSEEEEEEEEETTEEEEEEEETTSSCEEEECHHHHHHHHHHHHHSSCCCTTSCEEECGGGGTTSCCCCCGGGTTBHHHHH
T ss_pred CCeEEEEEcCCCcceEEEEEEhhhCceeeecHHHHHHhHHHhcCCCCCCCCceEEeccccccCCCCCCCcccccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCCCCchhHHHHHhhcccCCeeeecccccCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHhhhcCCcccc
Q 003987 163 NRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLNDRIQSISRLQSSLSKAEDHLSKLPPDTPFSQFEYVLQGMGFEKGW 242 (781)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw 242 (781)
|||||||||+|++++++||+||+.|+|+|++|||||||+|+++|++||++|++||+++|+||||++|+++||+|||||||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (816)
T 3s28_A 163 NRHLSAKLFHDKESLLPLLKFLRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGW 242 (816)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHCEETTEEBSBCTTCCSHHHHHHHHHHHHHHHHHSCTTCBHHHHHHHHHHTTBCBCS
T ss_pred HHHHHhhhcCChhhhHHHHHHHHHcccCCeeeeccCCcCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcCCCcccHhhhhcCCCCceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHH
Q 003987 243 GDTAEHVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLR 322 (781)
Q Consensus 243 g~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~r~p~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~ 322 (781)
||||+||+|||++|+++|++|||++||+|++|+||+|||+|+|+|||++|.+++|.||||||++||+|||||||++|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~ 322 (816)
T 3s28_A 243 GDNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQR 322 (816)
T ss_dssp CSBHHHHHHHHHHHHHHHHSCCHHHHHHHHHHSCCCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcCCCcccHHHHhccCCceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCceeecceEEEccCCCCCCCccCcceeeecCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHH
Q 003987 323 IKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITA 402 (781)
Q Consensus 323 L~~~GheV~~~v~VvT~~~p~~~~~~~~~~~e~v~~~~~~~I~rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~ 402 (781)
|+++||+|+|+|+|+|+.+++..++.|.++.+.+.++++++|+|+|+++.++++++|++++.+|+|+..|...+...+..
T Consensus 323 L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~ 402 (816)
T 3s28_A 323 IKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSK 402 (816)
T ss_dssp HHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHCCCccceeeEEEeCCCCCCCCCccCCcceeecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999888887777
Q ss_pred HcCCCceEEEEcCCCchHHHHHHHHHcCCcEEEEecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecC
Q 003987 403 ELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITST 482 (781)
Q Consensus 403 ~~~~kpDIIh~~~~~~~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S 482 (781)
..+++|||||+|++.+++++.++++++|+|+|+|+|+++..++..++.+|+.+...|++++++.++..+++.||.|||+|
T Consensus 403 ~~~~~PDVIHsH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S 482 (816)
T 3s28_A 403 ELNGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITST 482 (816)
T ss_dssp HCSSCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESC
T ss_pred hcCCCCeEEEeCCchHHHHHHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECC
Confidence 76779999999999999999999999999999999999988888888899999999999999999999999999999999
Q ss_pred HHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCcccccc
Q 003987 483 YQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDE 562 (781)
Q Consensus 483 ~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~ 562 (781)
.++++.+.+.+++|.++.+|++|++|++++|++++.+|+.|||||+|.+.|.|......++...++.+++.++++.+.++
T Consensus 483 ~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~ 562 (816)
T 3s28_A 483 FQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKE 562 (816)
T ss_dssp HHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTT
T ss_pred HHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHH
Confidence 99999888999999999999999999999999999999999999999999999887766777788889999999999999
Q ss_pred ccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCc
Q 003987 563 HVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQ 642 (781)
Q Consensus 563 ~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~ 642 (781)
.+|++.++++++|+|+||+++.||++.+++|++++.+.+++++|+|+|+|++ ..+.++++.++.++++++++++++.++
T Consensus 563 ~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~-~~~~~~e~~~~~~~L~~li~~lgL~~~ 641 (816)
T 3s28_A 563 HLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRR-KESKDNEEKAEMKKMYDLIEEYKLNGQ 641 (816)
T ss_dssp EESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTT-SCCCCHHHHHHHHHHHHHHHHTTCBBB
T ss_pred HhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCc-ccccchhhHHHHHHHHHHHHHcCCCCc
Confidence 9999888899999999999999999999999999988778999999999986 677889999999999999999999999
Q ss_pred EEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHH
Q 003987 643 FRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAA 722 (781)
Q Consensus 643 V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~G~lv~p~d~~~lA 722 (781)
|+|+|++++.++.+++++++++++|+||+||.+|+||++++||||||+|||+|+.||+.|+|.++.+|++++|+|++++|
T Consensus 642 V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA 721 (816)
T 3s28_A 642 FRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAA 721 (816)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHH
T ss_pred EEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHH
Confidence 99999888888889999999966899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHH
Q 003987 723 ELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVI 769 (781)
Q Consensus 723 ~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll 769 (781)
++|.++++++..|++.+++|+++|++++.++|||+.. ++.|.+++
T Consensus 722 ~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~--a~~ll~lY 766 (816)
T 3s28_A 722 DTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIY--SQRLLTLT 766 (816)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHH--HHHHHHHH
Confidence 9999998888899999999999999999999999764 34444444
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=1.3e-45 Score=421.69 Aligned_cols=435 Identities=28% Similarity=0.474 Sum_probs=314.1
Q ss_pred CCceeEEEEccCcCCcccc--cCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCccCcce
Q 003987 276 PMVFNVVILSPHGYFGQAN--VLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRL 353 (781)
Q Consensus 276 p~~mrI~ivS~h~~~~~~~--vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~~~~~~ 353 (781)
.|.|||++++++++|.... +.+.|..||.++++. +|++.|+++||+|+ |+|..........+....
T Consensus 5 ~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~ 72 (499)
T 2r60_A 5 TRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVK--------EVSLALAEMGVQVD----IITRRIKDENWPEFSGEI 72 (499)
T ss_dssp --CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCCBTTBGGGCCSE
T ss_pred cccceEEEEecCCCccccccccCCCCCCCCeeehHH--------HHHHHHHhcCCeEE----EEeCCCCcccccchhhhH
Confidence 4458999999998875422 244578899999999 77777899999999 988764321111222223
Q ss_pred eeecCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcE
Q 003987 354 ERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQ 433 (781)
Q Consensus 354 e~v~~~~~~~I~rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~~~~kpDIIh~~~~~~~lva~llar~~gvp~ 433 (781)
+......+++++++|..... +..+..+|.++..+...+.+.+++. ..+|||||+|++..++++.++++..++|+
T Consensus 73 ~~~~~~~gv~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~Divh~~~~~~~~~~~~~~~~~~~p~ 146 (499)
T 2r60_A 73 DYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKIINFYREE-GKFPQVVTTHYGDGGLAGVLLKNIKGLPF 146 (499)
T ss_dssp EECTTCSSEEEEEECCSCSS-----CCCGGGCGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHCCCE
T ss_pred HhccCCCCeEEEEecCCCcC-----CcCHHHHHHHHHHHHHHHHHHHHhc-CCCCCEEEEcCCcchHHHHHHHHhcCCcE
Confidence 33322347899999876432 2233456666655555555555543 24899999998777788888899999999
Q ss_pred EEEecCCcccCCC---CChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceee
Q 003987 434 CTIAHALEKTKYP---DSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRV 510 (781)
Q Consensus 434 v~t~H~l~~~k~~---~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v 510 (781)
|++.|+....... ........+...|++......+..+++.||.||++|....+.+.+..
T Consensus 147 v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~----------------- 209 (499)
T 2r60_A 147 TFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHD----------------- 209 (499)
T ss_dssp EEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSG-----------------
T ss_pred EEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhh-----------------
Confidence 9999986432210 00000011122233323334566789999999999988765221110
Q ss_pred ecc-C-CC-CCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccC-----CCCCCCCCEEEEEeecc
Q 003987 511 VHG-I-DV-FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVG-----TLSDRSKPIVFSMARLD 582 (781)
Q Consensus 511 ~~g-i-~~-f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~~g-----~l~~~~k~iIl~vGRL~ 582 (781)
..| + +. ...++.|||||+|.+.|.+......+. ..++.+| + ++++++|+++||+.
T Consensus 210 ~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~---------------~~r~~~~~~~~~~--~~~~~~i~~vGrl~ 272 (499)
T 2r60_A 210 LYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKA---------------KITKYLERDLGSE--RMELPAIIASSRLD 272 (499)
T ss_dssp GGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHH---------------HHHHHHHHHSCGG--GTTSCEEEECSCCC
T ss_pred cccccccccCCCCeEEECCCcChhhcCccchhhhHH---------------HHHHHhccccccc--CCCCcEEEEeecCc
Confidence 002 1 00 256899999999999887764311110 0012344 3 45778999999999
Q ss_pred CCCChHHHHHHHHHhhccCCC-eEEEEEeCcCCCCCCc---chHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHH
Q 003987 583 HVKNMTGLVECYGKNSQLREL-VNLVVVAGYIDVNKSK---DREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGEL 658 (781)
Q Consensus 583 ~~Kgl~~LieA~~~l~~~~~~-v~LvIVG~g~~~~~~~---d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el 658 (781)
+.||++.+++|++++.+..++ +.|+|+|+++.+..++ +.++.++.+.++++++++++.++|+|+| .++.+++
T Consensus 273 ~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G----~v~~~~~ 348 (499)
T 2r60_A 273 QKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFP----LNSQQEL 348 (499)
T ss_dssp GGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEE----CCSHHHH
T ss_pred cccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECC----CCCHHHH
Confidence 999999999999998765444 5899999833210110 1234455788999999999999999999 6778899
Q ss_pred HHHHHccC----cEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccC
Q 003987 659 YRYIADTK----GAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKE 734 (781)
Q Consensus 659 ~~~la~aa----dvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~ 734 (781)
..+|+. + |++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++++|+|+++++++|.+++ .
T Consensus 349 ~~~~~~-a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll----~ 423 (499)
T 2r60_A 349 AGCYAY-LASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAF----E 423 (499)
T ss_dssp HHHHHH-HHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHH----S
T ss_pred HHHHHh-cCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHH----h
Confidence 999995 9 999999999999999999999999999999999999999999999999999999999998887 8
Q ss_pred CHHHHHHHHHHHHHHHHHhcCcchh--hhccchHHHHHh
Q 003987 735 NPSHWKKISDGGLKRIYERLVVSSD--GIVDPSPFVINV 771 (781)
Q Consensus 735 dp~~~~~~s~~a~~~~~~~ysw~~~--~il~~ye~ll~~ 771 (781)
|++.++++++++++++.++|||+.+ .+.+.|+++++.
T Consensus 424 ~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~ 462 (499)
T 2r60_A 424 SEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADR 462 (499)
T ss_dssp CHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999989999876 555666666643
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.7e-43 Score=395.60 Aligned_cols=410 Identities=21% Similarity=0.296 Sum_probs=297.4
Q ss_pred CceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCccCcceeee
Q 003987 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV 356 (781)
Q Consensus 277 ~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~~~~~~e~v 356 (781)
.+|||+|++.+.+|.. ..|.+..||.+.++. +|++.|.++||+|+ |+|....... ......
T Consensus 19 ~mmkIl~i~~~~~p~~--~~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~-----~~~~~~ 79 (438)
T 3c48_A 19 SHMRVAMISMHTSPLQ--QPGTGDSGGMNVYIL--------STATELAKQGIEVD----IYTRATRPSQ-----GEIVRV 79 (438)
T ss_dssp CCCEEEEECTTSCTTC--C-------CHHHHHH--------HHHHHHHHTTCEEE----EEEECCCGGG-----CSEEEE
T ss_pred chheeeeEEeeccccc--cCCCCCCCCHHHHHH--------HHHHHHHhcCCEEE----EEecCCCCCC-----cccccc
Confidence 3589999998877531 123446899999999 77777899999999 8886632110 111111
Q ss_pred cCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcEEEE
Q 003987 357 SGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTI 436 (781)
Q Consensus 357 ~~~~~~~I~rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~~~~kpDIIh~~~~~~~lva~llar~~gvp~v~t 436 (781)
..++++++++.....+ .++..++.++..+...+.+..... ..+||+||+|++..++++.++++..++|+|++
T Consensus 80 --~~~v~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~ 151 (438)
T 3c48_A 80 --AENLRVINIAAGPYEG-----LSKEELPTQLAAFTGGMLSFTRRE-KVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHT 151 (438)
T ss_dssp --ETTEEEEEECCSCSSS-----CCGGGGGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEE
T ss_pred --cCCeEEEEecCCCccc-----cchhHHHHHHHHHHHHHHHHHHhc-cCCCCEEEeCCccHHHHHHHHHHHcCCCEEEE
Confidence 2368888888754321 223344555555554444442222 22499999998777777888888899999999
Q ss_pred ecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCC
Q 003987 437 AHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDV 516 (781)
Q Consensus 437 ~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~ 516 (781)
.|+............ . ..........+...++.+|.||++|....+.+.+. .|++
T Consensus 152 ~h~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~g~~- 206 (438)
T 3c48_A 152 AHTLAAVKNSYRDDS----D-TPESEARRICEQQLVDNADVLAVNTQEEMQDLMHH-------------------YDAD- 206 (438)
T ss_dssp CSSCHHHHSCC--------C-CHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHH-------------------HCCC-
T ss_pred ecCCccccccccccc----C-CcchHHHHHHHHHHHhcCCEEEEcCHHHHHHHHHH-------------------hCCC-
Confidence 998754321110000 0 00000111235567899999999998876532211 1333
Q ss_pred CCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHH
Q 003987 517 FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGK 596 (781)
Q Consensus 517 f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~ 596 (781)
..++.+||||+|.+.|.+....... ..++.+|+ ++++++|+++||+.+.||++.+++|+.+
T Consensus 207 -~~k~~vi~ngvd~~~~~~~~~~~~~----------------~~r~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~ 267 (438)
T 3c48_A 207 -PDRISVVSPGADVELYSPGNDRATE----------------RSRRELGI--PLHTKVVAFVGRLQPFKGPQVLIKAVAA 267 (438)
T ss_dssp -GGGEEECCCCCCTTTSCCC----CH----------------HHHHHTTC--CSSSEEEEEESCBSGGGCHHHHHHHHHH
T ss_pred -hhheEEecCCccccccCCcccchhh----------------hhHHhcCC--CCCCcEEEEEeeecccCCHHHHHHHHHH
Confidence 5689999999999988775432100 01134666 5678899999999999999999999999
Q ss_pred hhccCC--CeEEEEEeC----cCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEE
Q 003987 597 NSQLRE--LVNLVVVAG----YIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFV 670 (781)
Q Consensus 597 l~~~~~--~v~LvIVG~----g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvfV 670 (781)
+.+..| +++|+|+|+ |+. .+.++++++++++.++|.|+| .++.+++..+|+. +|++|
T Consensus 268 l~~~~p~~~~~l~i~G~~~~~g~~------------~~~l~~~~~~~~l~~~v~~~g----~~~~~~~~~~~~~-adv~v 330 (438)
T 3c48_A 268 LFDRDPDRNLRVIICGGPSGPNAT------------PDTYRHMAEELGVEKRIRFLD----PRPPSELVAVYRA-ADIVA 330 (438)
T ss_dssp HHHHCTTCSEEEEEECCBC------------------CHHHHHHHHTTCTTTEEEEC----CCCHHHHHHHHHH-CSEEE
T ss_pred HHhhCCCcceEEEEEeCCCCCCcH------------HHHHHHHHHHcCCCCcEEEcC----CCChHHHHHHHHh-CCEEE
Confidence 988766 899999998 433 567889999999999999999 6677899999995 99999
Q ss_pred EcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 003987 671 QPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRI 750 (781)
Q Consensus 671 ~PS~~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~ 750 (781)
+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++ .|++.++++++++++++
T Consensus 331 ~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~ 406 (438)
T 3c48_A 331 VPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLL----DDDETRIRMGEDAVEHA 406 (438)
T ss_dssp ECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHH
T ss_pred ECccccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887 79999999999999999
Q ss_pred HHhcCcchh--hhccchHHHHHhcCCCCcCC
Q 003987 751 YERLVVSSD--GIVDPSPFVINVISMPTQNH 779 (781)
Q Consensus 751 ~~~ysw~~~--~il~~ye~ll~~~~~~~~~~ 779 (781)
.+ |||+.. .+.+.|+++++.-.+..++|
T Consensus 407 ~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T 3c48_A 407 RT-FSWAATAAQLSSLYNDAIANENVDGETH 436 (438)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHTCCCCSCCC
T ss_pred Hh-CCHHHHHHHHHHHHHHHhhhcccCCCcC
Confidence 77 999876 66677777776655444443
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=3.7e-43 Score=390.64 Aligned_cols=405 Identities=16% Similarity=0.141 Sum_probs=299.2
Q ss_pred ceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCc---------
Q 003987 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT--------- 348 (781)
Q Consensus 278 ~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~--------- 348 (781)
.|||++++++.+| +..||.++++. +|+++|+++||+|+ |+|...+......
T Consensus 2 ~MkIl~v~~~~~p--------~~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~~~~~ 61 (439)
T 3fro_A 2 HMKVLLLGFEFLP--------VKVGGLAEALT--------AISEALASLGHEVL----VFTPSHGRFQGEEIGKIRVFGE 61 (439)
T ss_dssp CCEEEEECSCCTT--------SCSSSHHHHHH--------HHHHHHHHTTCEEE----EEEECTTCSCCEEEEEEEETTE
T ss_pred ceEEEEEecccCC--------cccCCHHHHHH--------HHHHHHHHCCCeEE----EEecCCCCchhhhhccccccCc
Confidence 4899999987763 36899999999 77778899999999 9997654432110
Q ss_pred -cCcceeeecCCCCeEEEEeccCCCcccccccccccCchh--------hHHHHHHHHHHHHHHHc--CCCceEEEEcCCC
Q 003987 349 -CNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWP--------YLETFTEDVGSEITAEL--QGFPDFIIGNYSD 417 (781)
Q Consensus 349 -~~~~~e~v~~~~~~~I~rvp~~~~~~~~~~~isr~~i~~--------yl~~f~~~~~~~i~~~~--~~kpDIIh~~~~~ 417 (781)
...... .....++.++++|. .. ..+..+++ .+..+...+.+.+...+ ..+|||||+|++.
T Consensus 62 ~~~~~~~-~~~~~gv~v~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~ 132 (439)
T 3fro_A 62 EVQVKVS-YEERGNLRIYRIGG-GL-------LDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWH 132 (439)
T ss_dssp EEEEEEE-EEEETTEEEEEEES-GG-------GGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGG
T ss_pred ccceeee-eccCCCceEEEecc-hh-------ccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchh
Confidence 000000 00234688888877 21 11222222 11224444444444331 5699999999988
Q ss_pred chHHHHHHHHHcCCcEEEEecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccc
Q 003987 418 GNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYE 497 (781)
Q Consensus 418 ~~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qye 497 (781)
.++++.++++..++|+|++.|+...............+... .+......+..+++.||.|+++|....+. ..+.
T Consensus 133 ~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ad~ii~~S~~~~~~---~~~~-- 206 (439)
T 3fro_A 133 TVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSEL-APYPDIDPEHTGGYIADIVTTVSRGYLID---EWGF-- 206 (439)
T ss_dssp GHHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGGG-CCSSEECHHHHHHHHCSEEEESCHHHHHH---THHH--
T ss_pred hhhhHHHHhhccCCCEEEEecccccccCchHHhCccccccc-cccceeeHhhhhhhhccEEEecCHHHHHH---Hhhh--
Confidence 88888999999999999999998654332111111111100 01112245667899999999999877652 1110
Q ss_pred cccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCc----HHHHHHhhhhcchhhhccCccccccccCCCCCCCCC
Q 003987 498 SHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYS----EKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKP 573 (781)
Q Consensus 498 s~~~f~l~~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~----~~~~r~~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~ 573 (781)
++....++.+||||+|.+.|.|.. ....+ ...++.+|+ +++ +
T Consensus 207 ----------------~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~---------------~~~~~~~~~--~~~-~ 252 (439)
T 3fro_A 207 ----------------FRNFEGKITYVFNGIDCSFWNESYLTGSRDERK---------------KSLLSKFGM--DEG-V 252 (439)
T ss_dssp ----------------HGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHH---------------HHHHHHHTC--CSC-E
T ss_pred ----------------hhhcCCceeecCCCCCchhcCcccccchhhhhH---------------HHHHHHcCC--CCC-c
Confidence 112377999999999999988752 11111 012245676 445 8
Q ss_pred EEEEEeecc-CCCChHHHHHHHHHhhccC--CCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecccc
Q 003987 574 IVFSMARLD-HVKNMTGLVECYGKNSQLR--ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQT 650 (781)
Q Consensus 574 iIl~vGRL~-~~Kgl~~LieA~~~l~~~~--~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~ 650 (781)
+|+++||+. +.||++.+++|++++.+.. ++++|+|+|+|+. .+.+.+++++++++ +.+.|.|
T Consensus 253 ~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~----------~~~~~l~~~~~~~~--~~~~~~g--- 317 (439)
T 3fro_A 253 TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP----------ELEGWARSLEEKHG--NVKVITE--- 317 (439)
T ss_dssp EEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH----------HHHHHHHHHHHHCT--TEEEECS---
T ss_pred EEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCCh----------hHHHHHHHHHhhcC--CEEEEcC---
Confidence 999999999 9999999999999998876 8999999999975 34588999999998 7788888
Q ss_pred CcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003987 651 NRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 651 ~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~ 730 (781)
.++.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++
T Consensus 318 -~~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll- 393 (439)
T 3fro_A 318 -MLSREFVRELYGS-VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKAL- 393 (439)
T ss_dssp -CCCHHHHHHHHTT-CSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHH-
T ss_pred -CCCHHHHHHHHHH-CCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHH-
Confidence 6778999999995 999999999999999999999999999999999999999887 999999999999999999888
Q ss_pred hccC-CHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhcCCCC
Q 003987 731 KCKE-NPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVISMPT 776 (781)
Q Consensus 731 ~l~~-dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll~~~~~~~ 776 (781)
. |++.++++++++++.+ ++|||+. +++.|.+++..+....
T Consensus 394 ---~~~~~~~~~~~~~~~~~~-~~~s~~~--~~~~~~~~~~~~~~~~ 434 (439)
T 3fro_A 394 ---ELSRSDLSKFRENCKKRA-MSFSWEK--SAERYVKAYTGSIDRA 434 (439)
T ss_dssp ---HHTTTTTHHHHHHHHHHH-HTSCHHH--HHHHHHHHHHTCSCCB
T ss_pred ---hcCHHHHHHHHHHHHHHH-hhCcHHH--HHHHHHHHHHHHHHhh
Confidence 5 8999999999999999 7899955 5677888877654433
No 5
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=9.4e-41 Score=386.87 Aligned_cols=328 Identities=16% Similarity=0.160 Sum_probs=231.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHHc-------CCcEEEEecCCcccCCC-CChh--------hHhhhh--cc---ccchhh
Q 003987 406 GFPDFIIGNYSDGNLVASLLAYKM-------GITQCTIAHALEKTKYP-DSDI--------YWKKFD--EK---YHFSCQ 464 (781)
Q Consensus 406 ~kpDIIh~~~~~~~lva~llar~~-------gvp~v~t~H~l~~~k~~-~s~~--------~~k~~~--~~---y~f~~~ 464 (781)
+.+||||+|+|.+++++.+++... ++|+|+|+|++...... .... .+.... .. ..+...
T Consensus 152 ~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (536)
T 3vue_A 152 GEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRK 231 (536)
T ss_dssp CSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEE
T ss_pred CCCEEEEECcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccc
Confidence 457899999999988888887654 69999999997554311 0000 000000 00 011112
Q ss_pred hhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHh
Q 003987 465 FTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLT 544 (781)
Q Consensus 465 ~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~r~~ 544 (781)
....+..+..||.|+|+|+..++.+....+.- ..+.. .....++.+|+||+|.+.|.|.++......
T Consensus 232 ~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g-----~~l~~--------~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~ 298 (536)
T 3vue_A 232 INWMKAGILEADRVLTVSPYYAEELISGIARG-----CELDN--------IMRLTGITGIVNGMDVSEWDPSKDKYITAK 298 (536)
T ss_dssp EEHHHHHHHHCSEEEESCHHHHHHHHTTCCCC-----SSSCC--------CSCCCSCEECCCCCCTTTSCTTTCSSSSCC
T ss_pred hhHHHHHHHhccEEEEcCHHHhhhhhcccccc-----ccccc--------ccccCCeEEEECCcchhhcCCCCccccccc
Confidence 33456788999999999998765433221100 00111 111568999999999999988542110000
Q ss_pred hh-hcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHH
Q 003987 545 AL-HGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREE 623 (781)
Q Consensus 545 ~~-~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee 623 (781)
.. ...++....++....+.+|+..+++.|+|+++||+.+.||++.|++|+.++.+ .+++|+|+|.|..
T Consensus 299 ~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~--~~~~l~l~G~G~~--------- 367 (536)
T 3vue_A 299 YDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ--EDVQIVLLGTGKK--------- 367 (536)
T ss_dssp CCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT--SSCEEEEECCBCH---------
T ss_pred cchhhhhhhhHHHHHHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHh--hCCeEEEEeccCc---------
Confidence 00 00000000111223356788778899999999999999999999999999976 4689999999865
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccc
Q 003987 624 IAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEI 703 (781)
Q Consensus 624 ~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG~~Ei 703 (781)
.....++..+..+ .++|.+.+ ..+.+++..+++. +|+||+||++|+||++++|||+||+|||+|++||++|+
T Consensus 368 -~~~~~~~~~~~~~--~~~v~~~~----~~~~~~~~~~~~~-aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~ 439 (536)
T 3vue_A 368 -KFEKLLKSMEEKY--PGKVRAVV----KFNAPLAHLIMAG-ADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDT 439 (536)
T ss_dssp -HHHHHHHHHHHHS--TTTEEEEC----SCCHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHH
T ss_pred -hHHHHHHHHHhhc--CCceEEEE----eccHHHHHHHHHh-hheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchhe
Confidence 3345556666655 46899998 5677888888985 99999999999999999999999999999999999999
Q ss_pred cccCCeEE----------EECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhc
Q 003987 704 IEHGASGF----------HIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVI 772 (781)
Q Consensus 704 I~dg~~G~----------lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll~~~ 772 (781)
|.||++|+ +++|.|+++++++|.++++ +..++ .|++|.+++ +.++|||++ +++.|++++..+
T Consensus 440 V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~-~~~~~-~~~~~~~~a---m~~~fSW~~--~A~~y~~ly~~L 511 (536)
T 3vue_A 440 VIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIK-VVGTP-AYEEMVRNC---MNQDLSWKG--PAKNWENVLLGL 511 (536)
T ss_dssp CCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHH-HTTSH-HHHHHHHHH---HHSCCSSHH--HHHHHHHHHHTT
T ss_pred eeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHH-hcCcH-HHHHHHHHH---HHhcCCHHH--HHHHHHHHHHHh
Confidence 99999999 6788899999999998874 33444 577887766 447899966 457788888765
No 6
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=4.3e-40 Score=361.23 Aligned_cols=369 Identities=15% Similarity=0.218 Sum_probs=281.1
Q ss_pred CceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCccCcceeee
Q 003987 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV 356 (781)
Q Consensus 277 ~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~~~~~~e~v 356 (781)
++|||++++++.. |..||.+.++. .|++.| +||+|+ |+|...+... ....
T Consensus 3 ~~mkIl~v~~~~~---------p~~gG~~~~~~--------~l~~~L--~g~~v~----v~~~~~~~~~-------~~~~ 52 (394)
T 3okp_A 3 ASRKTLVVTNDFP---------PRIGGIQSYLR--------DFIATQ--DPESIV----VFASTQNAEE-------AHAY 52 (394)
T ss_dssp -CCCEEEEESCCT---------TSCSHHHHHHH--------HHHTTS--CGGGEE----EEEECSSHHH-------HHHH
T ss_pred CCceEEEEeCccC---------CccchHHHHHH--------HHHHHh--cCCeEE----EEECCCCccc-------hhhh
Confidence 3589999997644 45799999999 666667 699999 8887643210 0111
Q ss_pred cCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCc-EEE
Q 003987 357 SGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGIT-QCT 435 (781)
Q Consensus 357 ~~~~~~~I~rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~~~~kpDIIh~~~~~~~lva~llar~~gvp-~v~ 435 (781)
....++.++++|..... ..+ .+...+.+.+.+. +||+||+|..........++++.++| +++
T Consensus 53 ~~~~~~~~~~~~~~~~~----------~~~----~~~~~l~~~~~~~---~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~ 115 (394)
T 3okp_A 53 DKTLDYEVIRWPRSVML----------PTP----TTAHAMAEIIRER---EIDNVWFGAAAPLALMAGTAKQAGASKVIA 115 (394)
T ss_dssp HTTCSSEEEEESSSSCC----------SCH----HHHHHHHHHHHHT---TCSEEEESSCTTGGGGHHHHHHTTCSEEEE
T ss_pred ccccceEEEEccccccc----------cch----hhHHHHHHHHHhc---CCCEEEECCcchHHHHHHHHHhcCCCcEEE
Confidence 22336788888765421 111 2233444444443 89999999877654455557778887 778
Q ss_pred EecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCC
Q 003987 436 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 515 (781)
Q Consensus 436 t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~ 515 (781)
+.|+... .|.. ...++ ......++.+|.|+++|....+...+. .+
T Consensus 116 ~~h~~~~--------~~~~-~~~~~-----~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~~-- 160 (394)
T 3okp_A 116 STHGHEV--------GWSM-LPGSR-----QSLRKIGTEVDVLTYISQYTLRRFKSA-------------------FG-- 160 (394)
T ss_dssp ECCSTHH--------HHTT-SHHHH-----HHHHHHHHHCSEEEESCHHHHHHHHHH-------------------HC--
T ss_pred Eeccchh--------hhhh-cchhh-----HHHHHHHHhCCEEEEcCHHHHHHHHHh-------------------cC--
Confidence 9997532 1110 01111 123457889999999998876532221 11
Q ss_pred CCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHH
Q 003987 516 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYG 595 (781)
Q Consensus 516 ~f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~ 595 (781)
...++.+||||+|.+.|.+........ .++.+|+ ++++++|+++||+.+.||++.+++|+.
T Consensus 161 -~~~~~~vi~ngv~~~~~~~~~~~~~~~----------------~~~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~ 221 (394)
T 3okp_A 161 -SHPTFEHLPSGVDVKRFTPATPEDKSA----------------TRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMP 221 (394)
T ss_dssp -SSSEEEECCCCBCTTTSCCCCHHHHHH----------------HHHHTTC--CTTCCEEEEESCSCGGGCHHHHHHHHH
T ss_pred -CCCCeEEecCCcCHHHcCCCCchhhHH----------------HHHhcCC--CcCceEEEEEeccccccCHHHHHHHHH
Confidence 156999999999999998844332111 1244676 567799999999999999999999999
Q ss_pred HhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCC
Q 003987 596 KNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFY 675 (781)
Q Consensus 596 ~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~ 675 (781)
++.+..++++|+|+|+|+. .+.+++++ .++.++|.|+| .++.+++..+++. +|++|+||.+
T Consensus 222 ~l~~~~~~~~l~i~G~g~~------------~~~l~~~~--~~~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~ps~~ 282 (394)
T 3okp_A 222 QVIAARPDAQLLIVGSGRY------------ESTLRRLA--TDVSQNVKFLG----RLEYQDMINTLAA-ADIFAMPART 282 (394)
T ss_dssp HHHHHSTTCEEEEECCCTT------------HHHHHHHT--GGGGGGEEEEE----SCCHHHHHHHHHH-CSEEEECCCC
T ss_pred HHHhhCCCeEEEEEcCchH------------HHHHHHHH--hcccCeEEEcC----CCCHHHHHHHHHh-CCEEEecCcc
Confidence 9988889999999999976 56777777 56778999999 6778999999995 9999999999
Q ss_pred -------CCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 003987 676 -------EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLK 748 (781)
Q Consensus 676 -------E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~ 748 (781)
|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++ .|++.++++++++++
T Consensus 283 ~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~ 357 (394)
T 3okp_A 283 RGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELL----DDPIRRAAMGAAGRA 357 (394)
T ss_dssp BGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred ccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHH----hCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999998887 899999999999999
Q ss_pred HHHHhcCcchhhhccchHHHHHhc
Q 003987 749 RIYERLVVSSDGIVDPSPFVINVI 772 (781)
Q Consensus 749 ~~~~~ysw~~~~il~~ye~ll~~~ 772 (781)
.+.++|||+. +++.|.++++..
T Consensus 358 ~~~~~~s~~~--~~~~~~~~~~~~ 379 (394)
T 3okp_A 358 HVEAEWSWEI--MGERLTNILQSE 379 (394)
T ss_dssp HHHHHTBHHH--HHHHHHHHHHSC
T ss_pred HHHHhCCHHH--HHHHHHHHHHHh
Confidence 9999999955 567777777654
No 7
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=2.3e-39 Score=357.95 Aligned_cols=360 Identities=18% Similarity=0.270 Sum_probs=263.1
Q ss_pred CCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCccCcceeeecCCCCeEEEEeccCCCcccccc
Q 003987 299 PDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQ 378 (781)
Q Consensus 299 p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~~~~~~e~v~~~~~~~I~rvp~~~~~~~~~~ 378 (781)
|..||.+.++. +|++.|+++||+|+ |+|...+.... ...+++.+..++.....
T Consensus 24 p~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~----------~~~~~i~~~~~~~~~~~----- 76 (394)
T 2jjm_A 24 PSVGGSGVVGT--------ELGKQLAERGHEIH----FITSGLPFRLN----------KVYPNIYFHEVTVNQYS----- 76 (394)
T ss_dssp C--CHHHHHHH--------HHHHHHHHTTCEEE----EECSSCC--------------CCCTTEEEECCCCC--------
T ss_pred CCCCCHHHHHH--------HHHHHHHhCCCEEE----EEeCCCCCccc----------ccCCceEEEeccccccc-----
Confidence 56899999999 77777899999999 99875332110 11224566555443211
Q ss_pred cccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCch-HHHHHHHHHc--CCcEEEEecCCcccCCCCChhhHhhh
Q 003987 379 WISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGN-LVASLLAYKM--GITQCTIAHALEKTKYPDSDIYWKKF 455 (781)
Q Consensus 379 ~isr~~i~~yl~~f~~~~~~~i~~~~~~kpDIIh~~~~~~~-lva~llar~~--gvp~v~t~H~l~~~k~~~s~~~~k~~ 455 (781)
.+...++...+...+.+.+.+. +||+||+|+..+. +.+.++++.. ++|+|++.|+........
T Consensus 77 ---~~~~~~~~~~~~~~l~~~l~~~---~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~-------- 142 (394)
T 2jjm_A 77 ---VFQYPPYDLALASKMAEVAQRE---NLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGS-------- 142 (394)
T ss_dssp ----CCSCCHHHHHHHHHHHHHHHH---TCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTT--------
T ss_pred ---ccccccccHHHHHHHHHHHHHc---CCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccccCC--------
Confidence 0111112223334445555554 8999999987654 3444444444 599999999853211110
Q ss_pred hccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCC
Q 003987 456 DEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFP 535 (781)
Q Consensus 456 ~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p 535 (781)
...+. ......++.+|.||++|....+...+. .+. ..++.+||||+|.+.|.+
T Consensus 143 ~~~~~-----~~~~~~~~~ad~ii~~s~~~~~~~~~~-------------------~~~---~~~~~vi~ngv~~~~~~~ 195 (394)
T 2jjm_A 143 DPSLN-----NLIRFGIEQSDVVTAVSHSLINETHEL-------------------VKP---NKDIQTVYNFIDERVYFK 195 (394)
T ss_dssp CTTTH-----HHHHHHHHHSSEEEESCHHHHHHHHHH-------------------TCC---SSCEEECCCCCCTTTCCC
T ss_pred CHHHH-----HHHHHHHhhCCEEEECCHHHHHHHHHh-------------------hCC---cccEEEecCCccHHhcCC
Confidence 00111 124457889999999998876532211 011 468999999999998877
Q ss_pred CcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCC
Q 003987 536 YSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDV 615 (781)
Q Consensus 536 ~~~~~~r~~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~ 615 (781)
......+ +.+|+ ++++++|+++||+.+.||++.+++|++++.+. ++++|+|+|+|+.
T Consensus 196 ~~~~~~~-------------------~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~- 252 (394)
T 2jjm_A 196 RDMTQLK-------------------KEYGI--SESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPE- 252 (394)
T ss_dssp CCCHHHH-------------------HHTTC--C---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEECCCTT-
T ss_pred cchHHHH-------------------HHcCC--CCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCEEEEECCchH-
Confidence 5432221 23555 46778999999999999999999999999766 5699999999976
Q ss_pred CCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc
Q 003987 616 NKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT 695 (781)
Q Consensus 616 ~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT 695 (781)
.+.++++++++++.++|.|+|. .+++..+|+. +|++|+||.+|+||++++|||+||+|||+|
T Consensus 253 -----------~~~l~~~~~~~~l~~~v~~~g~------~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~PvI~~ 314 (394)
T 2jjm_A 253 -----------FCTILQLVKNLHIEDRVLFLGK------QDNVAELLAM-SDLMLLLSEKESFGLVLLEAMACGVPCIGT 314 (394)
T ss_dssp -----------HHHHHHHHHTTTCGGGBCCCBS------CSCTHHHHHT-CSEEEECCSCCSCCHHHHHHHHTTCCEEEE
T ss_pred -----------HHHHHHHHHHcCCCCeEEEeCc------hhhHHHHHHh-CCEEEeccccCCCchHHHHHHhcCCCEEEe
Confidence 6788999999999999999994 2457888885 999999999999999999999999999999
Q ss_pred CccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhcC
Q 003987 696 CHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVIS 773 (781)
Q Consensus 696 ~~gG~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll~~~~ 773 (781)
+.||..|++.++.+|++++++|+++++++|.+++ .|++.+++|++++++++.++|||+. +++.|++++..+.
T Consensus 315 ~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~ 386 (394)
T 2jjm_A 315 RVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLL----KDEELHRNMGERARESVYEQFRSEK--IVSQYETIYYDVL 386 (394)
T ss_dssp CCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHTC
T ss_pred cCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887 7999999999999999999999966 4566666666544
No 8
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.2e-39 Score=370.51 Aligned_cols=430 Identities=15% Similarity=0.130 Sum_probs=278.6
Q ss_pred eeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCc----------
Q 003987 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT---------- 348 (781)
Q Consensus 279 mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~---------- 348 (781)
|||++++.+.+|. +..||.+.++. +|+++|+++||+|+ |+|...+......
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~~~~~~~~~~~~~ 61 (485)
T 2qzs_A 1 MQVLHVCSEMFPL-------LKTGGLADVIG--------ALPAAQIADGVDAR----VLLPAFPDIRRGVTDAQVVSRRD 61 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCHHHHHHCTTCEEEEEEC
T ss_pred CeEEEEeeecccc-------ccCCcHHHHHH--------HHHHHHHHcCCEEE----EEecCccccccccccceeEEEec
Confidence 7999999766531 24799999999 77778899999999 9986532110000
Q ss_pred -cCcceeee-cCCCCeEEEEeccCC---Ccc-ccc-----ccccccCchhhHHHHHHHHHHHHHHHc-CCCceEEEEcCC
Q 003987 349 -CNQRLERV-SGTEHTHILRVPFRS---EKG-ILR-----QWISRFDVWPYLETFTEDVGSEITAEL-QGFPDFIIGNYS 416 (781)
Q Consensus 349 -~~~~~e~v-~~~~~~~I~rvp~~~---~~~-~~~-----~~isr~~i~~yl~~f~~~~~~~i~~~~-~~kpDIIh~~~~ 416 (781)
.....+.. ....++.+++++... ..+ ... .|. ..+..+..+...+.+.+.... ..+|||||+|.+
T Consensus 62 ~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~ 138 (485)
T 2qzs_A 62 TFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYT---DNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDW 138 (485)
T ss_dssp CTTCCEEEEEEEETTEEEEEEECHHHHCCSSCSSBCTTSCBCT---THHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETG
T ss_pred ccCCcEEEEEEEECCcEEEEEeChhhccCCCCccCCcccCCCC---chHHHHHHHHHHHHHHHHHhccCCCCCEEEeecc
Confidence 00000000 001367888876421 000 000 000 000011122222222222211 158999999997
Q ss_pred CchHHHHHHH-HHcCCcEEEEecCCcccCCCCCh-h-----hHhhhh-ccccchhhhhHHHHHHhhCCEEEecCHHHHhh
Q 003987 417 DGNLVASLLA-YKMGITQCTIAHALEKTKYPDSD-I-----YWKKFD-EKYHFSCQFTADLIAMNNADFIITSTYQEIAG 488 (781)
Q Consensus 417 ~~~lva~lla-r~~gvp~v~t~H~l~~~k~~~s~-~-----~~k~~~-~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~ 488 (781)
..++++.+++ +..++|+|++.|+.......... + ....+. ....+......+..+++.+|.||++|....+.
T Consensus 139 ~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~ 218 (485)
T 2qzs_A 139 HAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYARE 218 (485)
T ss_dssp GGTTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHH
T ss_pred chhHHHHHHhhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHH
Confidence 7777777777 67899999999997532210000 0 000000 00001111234567889999999999887653
Q ss_pred ccccccccccccccccccceeeeccCCC------CC--CceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCcccc
Q 003987 489 TKNTVGQYESHTAFTLPGLYRVVHGIDV------FD--PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQN 560 (781)
Q Consensus 489 ~k~~v~qyes~~~f~l~~ly~v~~gi~~------f~--~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~ 560 (781)
+.+. ..|++. .. .++.+||||+|.+.|.|.........-....++.........
T Consensus 219 ~~~~------------------~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (485)
T 2qzs_A 219 ITEP------------------QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQL 280 (485)
T ss_dssp TTSH------------------HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHH
T ss_pred Hhcc------------------ccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHH
Confidence 2211 002110 12 689999999999988775321000000000000000000112
Q ss_pred ccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCC
Q 003987 561 DEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLD 640 (781)
Q Consensus 561 ~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~ 640 (781)
++++|+..++++++|+++||+.+.||++.+++|++++.+ ++++|+|+|+|+. .+.+.+++++++++
T Consensus 281 r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~-- 346 (485)
T 2qzs_A 281 QIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDP----------VLQEGFLAAAAEYP-- 346 (485)
T ss_dssp HHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECH----------HHHHHHHHHHHHST--
T ss_pred HHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCCch----------HHHHHHHHHHHhCC--
Confidence 245676433478999999999999999999999999976 4899999999864 34678888898886
Q ss_pred CcEE-EeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC---------CeE
Q 003987 641 GQFR-WIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHG---------ASG 710 (781)
Q Consensus 641 ~~V~-flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg---------~~G 710 (781)
++|. |.|+ +.+++..+|+. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|
T Consensus 347 ~~v~~~~g~-----~~~~~~~~~~~-adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G 420 (485)
T 2qzs_A 347 GQVGVQIGY-----HEAFSHRIMGG-ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASG 420 (485)
T ss_dssp TTEEEEESC-----CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCB
T ss_pred CcEEEeCCC-----CHHHHHHHHHh-CCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccce
Confidence 6786 7873 45677899995 999999999999999999999999999999999999999998 899
Q ss_pred EEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhcCC
Q 003987 711 FHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVISM 774 (781)
Q Consensus 711 ~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll~~~~~ 774 (781)
++++++|+++++++|.++++ +..|++.+++|++++++ ++|||+. +++.|.+++..+..
T Consensus 421 ~l~~~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~--~~~~~~~ly~~~~~ 478 (485)
T 2qzs_A 421 FVFEDSNAWSLLRAIRRAFV-LWSRPSLWRFVQRQAMA---MDFSWQV--AAKSYRELYYRLKL 478 (485)
T ss_dssp EEECSSSHHHHHHHHHHHHH-HHTSHHHHHHHHHHHHH---CCCCHHH--HHHHHHHHHHHHC-
T ss_pred EEECCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh---hcCCHHH--HHHHHHHHHHHhhh
Confidence 99999999999999988762 22589999999999874 7999966 45666666665433
No 9
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=9e-40 Score=371.41 Aligned_cols=433 Identities=15% Similarity=0.159 Sum_probs=277.9
Q ss_pred eeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCccCc-------
Q 003987 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQ------- 351 (781)
Q Consensus 279 mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~~~~------- 351 (781)
|||++++.+.+|. +..||.+.++. +|+++|+++||+|+ |+|...+.... .+..
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~-~~~~~~~~~~~ 60 (485)
T 1rzu_A 1 MNVLSVSSEIYPL-------IKTGGLADVVG--------ALPIALEAHGVRTR----TLIPGYPAVKA-AVTDPVKCFEF 60 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCHHHHH-HCCSCEEEEEE
T ss_pred CeEEEEeeeeccc-------cccccHHHHHH--------HHHHHHHHcCCeEE----EEecccccccc-cccccceeEEE
Confidence 7999999876641 24799999999 77778899999999 99865322100 0000
Q ss_pred ------ceeee-cCCCCeEEEEeccCCC---c-cccc-----ccccccCchhhHHHHHHHHHHHHHHH-cCCCceEEEEc
Q 003987 352 ------RLERV-SGTEHTHILRVPFRSE---K-GILR-----QWISRFDVWPYLETFTEDVGSEITAE-LQGFPDFIIGN 414 (781)
Q Consensus 352 ------~~e~v-~~~~~~~I~rvp~~~~---~-~~~~-----~~isr~~i~~yl~~f~~~~~~~i~~~-~~~kpDIIh~~ 414 (781)
..... ....++.+++++.... . +... .|. .....+..+...+.+.+... ...+|||||+|
T Consensus 61 ~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~ 137 (485)
T 1rzu_A 61 TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYP---DNWKRFAALSLAAARIGAGVLPGWRPDMVHAH 137 (485)
T ss_dssp SCSSSCCEEEEEEEETTEEEEEEECHHHHCSSSCSSBCTTSSBCT---THHHHHHHHHHHHHHHHTTCSSSCCCSEEEEE
T ss_pred EEecCCeEEEEEEEecCceEEEEeChHHhCCCccccCCccccccc---chHHHHHHHHHHHHHHHHHhccCCCCCEEEec
Confidence 00000 0123688888764310 0 0000 000 00001112222233322221 14689999999
Q ss_pred CCCchHHHHHHHHH--cCCcEEEEecCCcccCCCCC-hh-----hHhhhh-ccccchhhhhHHHHHHhhCCEEEecCHHH
Q 003987 415 YSDGNLVASLLAYK--MGITQCTIAHALEKTKYPDS-DI-----YWKKFD-EKYHFSCQFTADLIAMNNADFIITSTYQE 485 (781)
Q Consensus 415 ~~~~~lva~llar~--~gvp~v~t~H~l~~~k~~~s-~~-----~~k~~~-~~y~f~~~~~~e~~a~~~AD~IIt~S~~~ 485 (781)
.+..++++.++++. .++|+|++.|+......... .+ .+..+. ....+......+..+++.||.||++|...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 217 (485)
T 1rzu_A 138 DWQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSY 217 (485)
T ss_dssp HHHHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHH
T ss_pred ccchhHHHHHHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhH
Confidence 87666677777765 89999999999754321100 00 000000 00011111134567889999999999987
Q ss_pred HhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccC
Q 003987 486 IAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVG 565 (781)
Q Consensus 486 ~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~~g 565 (781)
.+.+.+.. | ++.++.+ +.....++.+||||+|.+.|.|...............+.........++++|
T Consensus 218 ~~~~~~~~--~----g~~~~~~------~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 285 (485)
T 1rzu_A 218 AEEILTAE--F----GMGLEGV------IGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFR 285 (485)
T ss_dssp HHHTTSHH--H----HTTCHHH------HHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHT
T ss_pred HHHHhccc--c----CcchHHH------HHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcC
Confidence 65322110 0 0000000 0012569999999999998877542100000000000000000001124467
Q ss_pred CCCCCC-CCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEE
Q 003987 566 TLSDRS-KPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR 644 (781)
Q Consensus 566 ~l~~~~-k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~ 644 (781)
+ +++ +++|+++||+.+.||++.|++|++++.+ ++++|+|+|+|+. .+.+.+++++++++ ++|.
T Consensus 286 ~--~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~--~~v~ 349 (485)
T 1rzu_A 286 I--DDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDV----------ALEGALLAAASRHH--GRVG 349 (485)
T ss_dssp C--CCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCH----------HHHHHHHHHHHHTT--TTEE
T ss_pred C--CCCCCeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCCch----------HHHHHHHHHHHhCC--CcEE
Confidence 6 332 6799999999999999999999999876 4899999999864 34678888898885 6787
Q ss_pred -EeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC---------CeEEEEC
Q 003987 645 -WIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHG---------ASGFHID 714 (781)
Q Consensus 645 -flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg---------~~G~lv~ 714 (781)
|.|+ +.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|++++
T Consensus 350 ~~~g~-----~~~~~~~~~~~-adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~ 423 (485)
T 1rzu_A 350 VAIGY-----NEPLSHLMQAG-CDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFS 423 (485)
T ss_dssp EEESC-----CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEES
T ss_pred EecCC-----CHHHHHHHHhc-CCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeC
Confidence 7873 45677899995 999999999999999999999999999999999999999998 8999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhcCC
Q 003987 715 PYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVISM 774 (781)
Q Consensus 715 p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll~~~~~ 774 (781)
++|+++++++|.+++. +..|++.+++|++++++ ++|||+.+ ++.|.+++..+..
T Consensus 424 ~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~~--~~~~~~~y~~~~~ 477 (485)
T 1rzu_A 424 PVTLDGLKQAIRRTVR-YYHDPKLWTQMQKLGMK---SDVSWEKS--AGLYAALYSQLIS 477 (485)
T ss_dssp SCSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHT---CCCBHHHH--HHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH---HhCChHHH--HHHHHHHHHHhhC
Confidence 9999999999988762 22589999999999874 78999664 4566666655433
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=3.3e-39 Score=352.15 Aligned_cols=366 Identities=15% Similarity=0.206 Sum_probs=258.5
Q ss_pred eeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCccCcceeeecC
Q 003987 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (781)
Q Consensus 279 mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~~~~~~e~v~~ 358 (781)
|||++++++.. | .||.+.++. +|++.|+++||+|+ |+|.......
T Consensus 1 MkIl~i~~~~~---------~-~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~------------- 45 (374)
T 2iw1_A 1 MIVAFCLYKYF---------P-FGGLQRDFM--------RIASTVAARGHHVR----VYTQSWEGDC------------- 45 (374)
T ss_dssp -CEEEECSEEC---------T-TCHHHHHHH--------HHHHHHHHTTCCEE----EEESEECSCC-------------
T ss_pred CeEEEEEeecC---------C-CcchhhHHH--------HHHHHHHhCCCeEE----EEecCCCCCC-------------
Confidence 79999997543 2 589999999 77778899999999 9987632210
Q ss_pred CCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcEEEEec
Q 003987 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAH 438 (781)
Q Consensus 359 ~~~~~I~rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~~~~kpDIIh~~~~~~~lva~llar~~gvp~v~t~H 438 (781)
.+++++.++|...... ......+...+.+.+.+ .+||+||+|....+..+...++..+++.+.+.|
T Consensus 46 ~~~~~v~~~~~~~~~~-----------~~~~~~~~~~l~~~i~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (374)
T 2iw1_A 46 PKAFELIQVPVKSHTN-----------HGRNAEYYAWVQNHLKE---HPADRVVGFNKMPGLDVYFAADVCYAEKVAQEK 111 (374)
T ss_dssp CTTCEEEECCCCCSSH-----------HHHHHHHHHHHHHHHHH---SCCSEEEESSCCTTCSEEECCSCCHHHHHHHHC
T ss_pred CCCcEEEEEccCcccc-----------hhhHHHHHHHHHHHHhc---cCCCEEEEecCCCCceeeeccccccceeeeecc
Confidence 1257888887654211 11122333344444444 389999998865432111111111122222223
Q ss_pred CCcccCCCCChhhHhhhhccccchhhhhHHHHHHh--hCCEEEecCHHHHhhccccccccccccccccccceeeeccCCC
Q 003987 439 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMN--NADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDV 516 (781)
Q Consensus 439 ~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~--~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~ 516 (781)
+... .....+.+.. ..+...+. .+|.|+++|....+...+. .|++
T Consensus 112 ~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~~~~- 158 (374)
T 2iw1_A 112 GFLY-----------RLTSRYRHYA--AFERATFEQGKSTKLMMLTDKQIADFQKH-------------------YQTE- 158 (374)
T ss_dssp CHHH-----------HTSHHHHHHH--HHHHHHHSTTCCCEEEESCHHHHHHHHHH-------------------HCCC-
T ss_pred cchh-----------hhcHHHHHHH--HHHHHHhhccCCcEEEEcCHHHHHHHHHH-------------------hCCC-
Confidence 2100 0001111111 12233343 6999999998876532211 1333
Q ss_pred CCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHH
Q 003987 517 FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGK 596 (781)
Q Consensus 517 f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~ 596 (781)
..++.+||||+|.+.|.+......+. ..++.+|+ ++++++|+++||+.+.||++.+++|+..
T Consensus 159 -~~~~~vi~ngv~~~~~~~~~~~~~~~---------------~~~~~~~~--~~~~~~i~~~G~~~~~K~~~~li~a~~~ 220 (374)
T 2iw1_A 159 -PERFQILPPGIYPDRKYSEQIPNSRE---------------IYRQKNGI--KEQQNLLLQVGSDFGRKGVDRSIEALAS 220 (374)
T ss_dssp -GGGEEECCCCCCGGGSGGGSCTTHHH---------------HHHHHTTC--CTTCEEEEEECSCTTTTTHHHHHHHHHT
T ss_pred -hhheEEecCCcCHHhcCcccchhHHH---------------HHHHHhCC--CCCCeEEEEeccchhhcCHHHHHHHHHH
Confidence 56899999999998886643211110 11234666 5677899999999999999999999999
Q ss_pred hhcc-CCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCC
Q 003987 597 NSQL-RELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFY 675 (781)
Q Consensus 597 l~~~-~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~ 675 (781)
+.+. .++++|+|+|+|+. +.++++++++++.++|+|+|++ +++..+++. +|++|+||.+
T Consensus 221 l~~~~~~~~~l~i~G~g~~-------------~~~~~~~~~~~~~~~v~~~g~~------~~~~~~~~~-ad~~v~ps~~ 280 (374)
T 2iw1_A 221 LPESLRHNTLLFVVGQDKP-------------RKFEALAEKLGVRSNVHFFSGR------NDVSELMAA-ADLLLHPAYQ 280 (374)
T ss_dssp SCHHHHHTEEEEEESSSCC-------------HHHHHHHHHHTCGGGEEEESCC------SCHHHHHHH-CSEEEECCSC
T ss_pred hHhccCCceEEEEEcCCCH-------------HHHHHHHHHcCCCCcEEECCCc------ccHHHHHHh-cCEEEecccc
Confidence 8765 57899999999854 4678889999999999999942 468888985 9999999999
Q ss_pred CCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEEC-CCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc
Q 003987 676 EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHID-PYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERL 754 (781)
Q Consensus 676 E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~G~lv~-p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~y 754 (781)
|+||++++|||+||+|||+|+.||..|++.++.+|++++ |+|+++++++|.+++ +|++.++++++++++.+. +|
T Consensus 281 e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~~-~~ 355 (374)
T 2iw1_A 281 EAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKAL----TQSPLRMAWAENARHYAD-TQ 355 (374)
T ss_dssp CSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHH-HS
T ss_pred CCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHH----cChHHHHHHHHHHHHHHH-Hh
Confidence 999999999999999999999999999999999999998 899999999998887 799999999999999995 67
Q ss_pred CcchhhhccchHHHHHh
Q 003987 755 VVSSDGIVDPSPFVINV 771 (781)
Q Consensus 755 sw~~~~il~~ye~ll~~ 771 (781)
+|.. +.+.+.+++..
T Consensus 356 ~~~~--~~~~~~~~l~~ 370 (374)
T 2iw1_A 356 DLYS--LPEKAADIITG 370 (374)
T ss_dssp CCSC--HHHHHHHHHHC
T ss_pred hHHH--HHHHHHHHHHH
Confidence 9955 44566666643
No 11
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=1.5e-38 Score=350.84 Aligned_cols=362 Identities=14% Similarity=0.146 Sum_probs=261.4
Q ss_pred CCceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCccCcceee
Q 003987 276 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLER 355 (781)
Q Consensus 276 p~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~~~~~~e~ 355 (781)
.++|||+++++... |..||.+.++. .+++.|.++||+|+ ++|......... ....
T Consensus 18 ~~~MkIl~i~~~~~---------~~~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~~~----~~~~ 72 (406)
T 2gek_A 18 GSHMRIGMVCPYSF---------DVPGGVQSHVL--------QLAEVLRDAGHEVS----VLAPASPHVKLP----DYVV 72 (406)
T ss_dssp ---CEEEEECSSCT---------TSCCHHHHHHH--------HHHHHHHHTTCEEE----EEESCCTTSCCC----TTEE
T ss_pred CCcceEEEEeccCC---------CCCCcHHHHHH--------HHHHHHHHCCCeEE----EEecCCccccCC----cccc
Confidence 44689999995432 34689999999 77778899999999 998774432101 1111
Q ss_pred ecCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcEEE
Q 003987 356 VSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCT 435 (781)
Q Consensus 356 v~~~~~~~I~rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~~~~kpDIIh~~~~~~~lva~llar~~gvp~v~ 435 (781)
.. + +++++|+... ..+... ...+...+.+.+.+. +||+||+|.......+.++++..++|+++
T Consensus 73 ~~---~-~~~~~~~~~~-------~~~~~~---~~~~~~~l~~~l~~~---~~Dii~~~~~~~~~~~~~~~~~~~~~~i~ 135 (406)
T 2gek_A 73 SG---G-KAVPIPYNGS-------VARLRF---GPATHRKVKKWIAEG---DFDVLHIHEPNAPSLSMLALQAAEGPIVA 135 (406)
T ss_dssp EC---C-CCC-------------------C---CHHHHHHHHHHHHHH---CCSEEEEECCCSSSHHHHHHHHEESSEEE
T ss_pred cC---C-cEEeccccCC-------cccccc---cHHHHHHHHHHHHhc---CCCEEEECCccchHHHHHHHHhcCCCEEE
Confidence 11 1 3444444321 001111 111223344445444 89999999987755577788888999999
Q ss_pred EecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCC
Q 003987 436 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 515 (781)
Q Consensus 436 t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~ 515 (781)
+.|+..... ..++.+ +++ .+ ..++.+|.++++|....+...+ +++
T Consensus 136 ~~h~~~~~~-----~~~~~~---~~~-----~~-~~~~~~d~ii~~s~~~~~~~~~---------------------~~~ 180 (406)
T 2gek_A 136 TFHTSTTKS-----LTLSVF---QGI-----LR-PYHEKIIGRIAVSDLARRWQME---------------------ALG 180 (406)
T ss_dssp EECCCCCSH-----HHHHHH---HST-----TH-HHHTTCSEEEESSHHHHHHHHH---------------------HHS
T ss_pred EEcCcchhh-----hhHHHH---HHH-----HH-HHHhhCCEEEECCHHHHHHHHH---------------------hcC
Confidence 999853321 111111 111 11 5788999999999877552211 112
Q ss_pred CCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeec-cCCCChHHHHHHH
Q 003987 516 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARL-DHVKNMTGLVECY 594 (781)
Q Consensus 516 ~f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL-~~~Kgl~~LieA~ 594 (781)
..++ +||||+|.+.|.+.... .++ +.++++|+++||+ .+.||++.+++|+
T Consensus 181 --~~~~-vi~~~v~~~~~~~~~~~------------------------~~~--~~~~~~i~~~G~~~~~~Kg~~~li~a~ 231 (406)
T 2gek_A 181 --SDAV-EIPNGVDVASFADAPLL------------------------DGY--PREGRTVLFLGRYDEPRKGMAVLLAAL 231 (406)
T ss_dssp --SCEE-ECCCCBCHHHHHTCCCC------------------------TTC--SCSSCEEEEESCTTSGGGCHHHHHHHH
T ss_pred --CCcE-EecCCCChhhcCCCchh------------------------hhc--cCCCeEEEEEeeeCccccCHHHHHHHH
Confidence 4578 99999998655443210 112 2356899999999 9999999999999
Q ss_pred HHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCC
Q 003987 595 GKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF 674 (781)
Q Consensus 595 ~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~ 674 (781)
.++.+..++++|+|+|+++. +.++++++++ .++|.|+| .++..++..+|+. +|++|+||.
T Consensus 232 ~~l~~~~~~~~l~i~G~~~~-------------~~l~~~~~~~--~~~v~~~g----~~~~~~~~~~~~~-adv~v~ps~ 291 (406)
T 2gek_A 232 PKLVARFPDVEILIVGRGDE-------------DELREQAGDL--AGHLRFLG----QVDDATKASAMRS-ADVYCAPHL 291 (406)
T ss_dssp HHHHTTSTTCEEEEESCSCH-------------HHHHHHTGGG--GGGEEECC----SCCHHHHHHHHHH-SSEEEECCC
T ss_pred HHHHHHCCCeEEEEEcCCcH-------------HHHHHHHHhc--cCcEEEEe----cCCHHHHHHHHHH-CCEEEecCC
Confidence 99988888999999999842 4667777766 68899999 6777899999995 999999996
Q ss_pred -CCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Q 003987 675 -YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYER 753 (781)
Q Consensus 675 -~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ 753 (781)
.|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++ .|++.++++++++++.+. +
T Consensus 292 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~~-~ 366 (406)
T 2gek_A 292 GGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGIL----EDDQLRAGYVARASERVH-R 366 (406)
T ss_dssp SCCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHGG-G
T ss_pred CCCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHH-h
Confidence 9999999999999999999999999999999999999999999999999998887 799999999999999997 9
Q ss_pred cCcchhhhccchHHHHH
Q 003987 754 LVVSSDGIVDPSPFVIN 770 (781)
Q Consensus 754 ysw~~~~il~~ye~ll~ 770 (781)
|+|+.. ++.|.+++.
T Consensus 367 ~s~~~~--~~~~~~~~~ 381 (406)
T 2gek_A 367 YDWSVV--SAQIMRVYE 381 (406)
T ss_dssp GBHHHH--HHHHHHHHH
T ss_pred CCHHHH--HHHHHHHHH
Confidence 999765 344555544
No 12
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=6.8e-38 Score=348.66 Aligned_cols=371 Identities=15% Similarity=0.172 Sum_probs=258.9
Q ss_pred ceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCccCcceeeec
Q 003987 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVS 357 (781)
Q Consensus 278 ~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~~~~~~e~v~ 357 (781)
.|||++++++. ..||.+.++. .|++.|.++||+|+ |++...+.. .......+.
T Consensus 40 ~mkIl~v~~~~-----------~~GG~~~~~~--------~l~~~L~~~G~~v~----v~~~~~~~~----~~~~~~~~~ 92 (416)
T 2x6q_A 40 GRSFVHVNSTS-----------FGGGVAEILH--------SLVPLLRSIGIEAR----WFVIEGPTE----FFNVTKTFH 92 (416)
T ss_dssp TCEEEEEESCS-----------SSSTHHHHHH--------HHHHHHHHTTCEEE----EEECCCCHH----HHHHHHHHH
T ss_pred ccEEEEEeCCC-----------CCCCHHHHHH--------HHHHHHHhCCCeEE----EEEccCCcc----hhhhhcccc
Confidence 48999998652 3689999999 77777899999999 887542210 000000000
Q ss_pred C-CCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcEEEE
Q 003987 358 G-TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTI 436 (781)
Q Consensus 358 ~-~~~~~I~rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~~~~kpDIIh~~~~~~~lva~llar~~gvp~v~t 436 (781)
. ..+...++ ++. ..+.....+...+.+.+. ..+||+||+|.+.....+.++++ ++|+|++
T Consensus 93 ~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~~l~---~~~~Dvv~~~~~~~~~~~~~~~~--~~p~v~~ 153 (416)
T 2x6q_A 93 NALQGNESLK-------------LTE-EMKELYLNVNRENSKFID---LSSFDYVLVHDPQPAALIEFYEK--KSPWLWR 153 (416)
T ss_dssp HHHTTCCSCC-------------CCH-HHHHHHHHHHHHHHHSSC---GGGSSEEEEESSTTGGGGGGSCC--CSCEEEE
T ss_pred eeeccccccc-------------ccH-HHHHHHHHHHHHHHHHHh---hcCCCEEEEeccchhhHHHHHHh--cCCEEEE
Confidence 0 00000000 000 001111111111222221 23899999998876444443332 3899999
Q ss_pred ecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCC
Q 003987 437 AHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDV 516 (781)
Q Consensus 437 ~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~ 516 (781)
.|+..... ....|+. ....+..+|.+|+++..... + ++.
T Consensus 154 ~h~~~~~~---~~~~~~~-------------~~~~~~~~~~~i~~~s~~~~---~---------------------~~~- 192 (416)
T 2x6q_A 154 CHIDLSSP---NREFWEF-------------LRRFVEKYDRYIFHLPEYVQ---P---------------------ELD- 192 (416)
T ss_dssp CCSCCSSC---CHHHHHH-------------HHHHHTTSSEEEESSGGGSC---T---------------------TSC-
T ss_pred EccccCCc---cHHHHHH-------------HHHHHHhCCEEEEechHHHH---h---------------------hCC-
Confidence 99854321 1112211 11345677877644432211 0 111
Q ss_pred CCCceEEecCCCcCCCCCCCc--HHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHH
Q 003987 517 FDPKFNIVSPGADMDIYFPYS--EKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECY 594 (781)
Q Consensus 517 f~~k~~VIpnGvD~~~f~p~~--~~~~r~~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~ 594 (781)
..++.+||||+|...+.+.. ..... ..++.+|+ ++++++|+++||+.+.||++.+++|+
T Consensus 193 -~~~~~vi~ngvd~~~~~~~~~~~~~~~----------------~~r~~~~~--~~~~~~i~~vGrl~~~Kg~~~li~a~ 253 (416)
T 2x6q_A 193 -RNKAVIMPPSIDPLSEKNVELKQTEIL----------------RILERFDV--DPEKPIITQVSRFDPWKGIFDVIEIY 253 (416)
T ss_dssp -TTTEEECCCCBCTTSTTTSCCCHHHHH----------------HHHHHTTC--CTTSCEEEEECCCCTTSCHHHHHHHH
T ss_pred -ccceEEeCCCCChhhhcccccChhhHH----------------HHHHHhCC--CCCCcEEEEEeccccccCHHHHHHHH
Confidence 46899999999987765422 11110 11234666 56788999999999999999999999
Q ss_pred HHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCC
Q 003987 595 GKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF 674 (781)
Q Consensus 595 ~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~ 674 (781)
+.+.+..|+++|+|+|+|+.. ..+..+.++++++++++.++|+|+|+.. ..+.+++..+++. +|++|+||.
T Consensus 254 ~~l~~~~~~~~l~i~G~g~~~-------~~~~~~~l~~~~~~~~~~~~V~~~G~~~-~~~~~~~~~~~~~-ad~~v~ps~ 324 (416)
T 2x6q_A 254 RKVKEKIPGVQLLLVGVMAHD-------DPEGWIYFEKTLRKIGEDYDVKVLTNLI-GVHAREVNAFQRA-SDVILQMSI 324 (416)
T ss_dssp HHHHHHCTTCEEEEEECCCTT-------CHHHHHHHHHHHHHHTTCTTEEEEEGGG-TCCHHHHHHHHHH-CSEEEECCS
T ss_pred HHHHHhCCCeEEEEEecCccc-------chhHHHHHHHHHHHhCCCCcEEEecccC-CCCHHHHHHHHHh-CCEEEECCC
Confidence 999888889999999999751 1123567888899999999999999655 3557799999995 999999999
Q ss_pred CCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc
Q 003987 675 YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERL 754 (781)
Q Consensus 675 ~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~y 754 (781)
+|+||++++|||+||+|||+|+.||..|++.++.+|++++ |+++++++|.+++ .|++.+++++++|++++.++|
T Consensus 325 ~E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll----~~~~~~~~~~~~a~~~~~~~f 398 (416)
T 2x6q_A 325 REGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--DANEAVEVVLYLL----KHPEVSKEMGAKAKERVRKNF 398 (416)
T ss_dssp SCSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEES--SHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEEC--CHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999997 9999999998887 799999999999999999999
Q ss_pred CcchhhhccchHHHHHh
Q 003987 755 VVSSDGIVDPSPFVINV 771 (781)
Q Consensus 755 sw~~~~il~~ye~ll~~ 771 (781)
||+. +++.|.+++..
T Consensus 399 s~~~--~~~~~~~~~~~ 413 (416)
T 2x6q_A 399 IITK--HMERYLDILNS 413 (416)
T ss_dssp BHHH--HHHHHHHHHHT
T ss_pred CHHH--HHHHHHHHHHH
Confidence 9965 55667776654
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=1.1e-37 Score=346.12 Aligned_cols=358 Identities=13% Similarity=0.095 Sum_probs=258.0
Q ss_pred eeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCccCcceeeecC
Q 003987 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (781)
Q Consensus 279 mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~~~~~~e~v~~ 358 (781)
|||++++++. |..||.+.++. +|+++|+++ |+|+ |+|.... +.....
T Consensus 1 MkI~~v~~~~----------p~~gG~~~~~~--------~l~~~L~~~-~~V~----v~~~~~~---g~~~~~------- 47 (413)
T 3oy2_A 1 MKLIIVGAHS----------SVPSGYGRVMR--------AIVPRISKA-HEVI----VFGIHAF---GRSVHA------- 47 (413)
T ss_dssp CEEEEEEECT----------TCCSHHHHHHH--------HHHHHHTTT-SEEE----EEEESCC---SCCSCS-------
T ss_pred CeEEEecCCC----------CCCCCHHHHHH--------HHHHHHHhc-CCeE----EEeecCC---Cccccc-------
Confidence 8999999753 45699999999 777788999 9999 8875532 100000
Q ss_pred CCCeEEEEeccCCCcccccccccc-cCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCc----E
Q 003987 359 TEHTHILRVPFRSEKGILRQWISR-FDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGIT----Q 433 (781)
Q Consensus 359 ~~~~~I~rvp~~~~~~~~~~~isr-~~i~~yl~~f~~~~~~~i~~~~~~kpDIIh~~~~~~~lva~llar~~gvp----~ 433 (781)
........... ..+ +++. ...| ..+.+.+... +||+||+|++ ....+.++++..++| .
T Consensus 48 --~~~~~~~~~~~---~~~-~~~~~~~~~-------~~l~~~l~~~---~~Div~~~~~-~~~~~~~~~~~~~~~~~~~~ 110 (413)
T 3oy2_A 48 --NIEEFDAQTAE---HVR-GLNEQGFYY-------SGLSEFIDVH---KPDIVMIYND-PIVIGNYLLAMGKCSHRTKI 110 (413)
T ss_dssp --SSEEEEHHHHH---HHT-TCCSTTCCH-------HHHHHHHHHH---CCSEEEEEEC-HHHHHHHHHHGGGCCSCCEE
T ss_pred --ccccCCccccc---ccc-ccccccchH-------HHHHHHHHhc---CCCEEEEcch-HHHHHHHHHHhccCCCCCce
Confidence 01110100000 000 1110 0111 1223344444 8999999944 445566677776655 3
Q ss_pred EEEecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCC--EEEecCHHHHhhccccccccccccccccccceeee
Q 003987 434 CTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNAD--FIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVV 511 (781)
Q Consensus 434 v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD--~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~ 511 (781)
+...|...... +.. ....++.+| .+|++|....+.+.+
T Consensus 111 ~~~~~~~~~~~--------~~~------------~~~~~~~~~~~~ii~~S~~~~~~~~~-------------------- 150 (413)
T 3oy2_A 111 VLYVDLVSKNI--------REN------------LWWIFSHPKVVGVMAMSKCWISDICN-------------------- 150 (413)
T ss_dssp EEEECCCSBSC--------CGG------------GGGGGGCTTEEEEEESSTHHHHHHHH--------------------
T ss_pred eeeccccchhh--------HHH------------HHHHHhccCCceEEEcCHHHHHHHHH--------------------
Confidence 44455332211 000 013567888 999999887653221
Q ss_pred ccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHH
Q 003987 512 HGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLV 591 (781)
Q Consensus 512 ~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~Li 591 (781)
.|+ ..++.+||||+|.+.|.. .. +.+|+....++++|+++||+.+.||++.++
T Consensus 151 ~~~---~~~~~vi~ngvd~~~~~~---~~---------------------~~~~~~~~~~~~~il~vGr~~~~Kg~~~li 203 (413)
T 3oy2_A 151 YGC---KVPINIVSHFVDTKTIYD---AR---------------------KLVGLSEYNDDVLFLNMNRNTARKRLDIYV 203 (413)
T ss_dssp TTC---CSCEEECCCCCCCCCCTT---HH---------------------HHTTCGGGTTSEEEECCSCSSGGGTHHHHH
T ss_pred cCC---CCceEEeCCCCCHHHHHH---HH---------------------HhcCCCcccCceEEEEcCCCchhcCcHHHH
Confidence 122 469999999999987711 11 225553223788999999999999999999
Q ss_pred HHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCc-------EEEeccccCcCChHHHHHHHHc
Q 003987 592 ECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQ-------FRWIAAQTNRARNGELYRYIAD 664 (781)
Q Consensus 592 eA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~-------V~flG~~~~~v~~~el~~~la~ 664 (781)
+|++++.+..++++|+|+|+|+.... ....+.++++++++++.++ |.|.| .++.+++..+|+.
T Consensus 204 ~a~~~l~~~~~~~~l~ivG~g~~~~~------~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g----~~~~~~~~~~~~~ 273 (413)
T 3oy2_A 204 LAAARFISKYPDAKVRFLCNSHHESK------FDLHSIALRELVASGVDNVFTHLNKIMINRT----VLTDERVDMMYNA 273 (413)
T ss_dssp HHHHHHHHHCTTCCEEEEEECCTTCS------CCHHHHHHHHHHHHTCSCHHHHHTTEEEECS----CCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEEeCCcccch------hhHHHHHHHHHHHcCcccccccccceeeccC----cCCHHHHHHHHHh
Confidence 99999988889999999999976110 0123678899999999987 78888 6778999999995
Q ss_pred cCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCe---------------EE--EECCCCHHHHHHHHHH
Q 003987 665 TKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGAS---------------GF--HIDPYHPDQAAELMAD 727 (781)
Q Consensus 665 aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~---------------G~--lv~p~d~~~lA~~I~~ 727 (781)
+|++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+ |+ +++++|+++++++| +
T Consensus 274 -adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~ 351 (413)
T 3oy2_A 274 -CDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-T 351 (413)
T ss_dssp -CSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-H
T ss_pred -CCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-H
Confidence 99999999999999999999999999999999999999999888 99 99999999999999 9
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhcCcchh--hhccchHHHH
Q 003987 728 FFGKCKENPSHWKKISDGGLKRIYERLVVSSD--GIVDPSPFVI 769 (781)
Q Consensus 728 ~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~--~il~~ye~ll 769 (781)
++ .|++.+++|++++++++.++|||+.. .+.+.|++++
T Consensus 352 l~----~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 391 (413)
T 3oy2_A 352 FF----KDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLL 391 (413)
T ss_dssp HT----TSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHT
T ss_pred Hh----cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 88 89999999999999999999999765 4444444444
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=1.6e-36 Score=328.72 Aligned_cols=309 Identities=15% Similarity=0.072 Sum_probs=237.5
Q ss_pred eeEEEEccC--------cCCcccccCCCC-CcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCcc
Q 003987 279 FNVVILSPH--------GYFGQANVLGLP-DTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTC 349 (781)
Q Consensus 279 mrI~ivS~h--------~~~~~~~vlg~p-~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~~ 349 (781)
|||++++++ .+|- .| ..||.+.++. +|++.|.++||+|+ ++|.......
T Consensus 4 mkIl~v~~~~~~~~~~~~~p~------~p~~~gG~~~~~~--------~l~~~L~~~G~~v~----v~~~~~~~~~---- 61 (342)
T 2iuy_A 4 LKVALVNIPLRVPGSDAWISV------PPQGYGGIQWVVA--------NLMDGLLELGHEVF----LLGAPGSPAG---- 61 (342)
T ss_dssp CEEEEECCCCBCTTSSSBCCS------SCSSSCHHHHHHH--------HHHHHHHHTTCEEE----EESCTTSCCC----
T ss_pred cEEEEEeccccccCccccccc------CcccCChHHHHHH--------HHHHHHHHcCCeEE----EEecCCCCCC----
Confidence 899999987 3211 12 3699999999 77777899999999 8876632211
Q ss_pred CcceeeecCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHc
Q 003987 350 NQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKM 429 (781)
Q Consensus 350 ~~~~e~v~~~~~~~I~rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~~~~kpDIIh~~~~~~~lva~llar~~ 429 (781)
..++.+++ .. .+. .+.+.+.+ .+||+||+|.......+ ++..
T Consensus 62 ---------~~~~~~~~--~~--------------~~~-------~l~~~l~~---~~~Dvi~~~~~~~~~~~---~~~~ 103 (342)
T 2iuy_A 62 ---------RPGLTVVP--AG--------------EPE-------EIERWLRT---ADVDVVHDHSGGVIGPA---GLPP 103 (342)
T ss_dssp ---------STTEEECS--CC--------------SHH-------HHHHHHHH---CCCSEEEECSSSSSCST---TCCT
T ss_pred ---------CCcceecc--CC--------------cHH-------HHHHHHHh---cCCCEEEECCchhhHHH---Hhhc
Confidence 01233321 11 010 23333433 38999999997764332 5677
Q ss_pred CCcEEEEecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhcccccccccccccccccccee
Q 003987 430 GITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYR 509 (781)
Q Consensus 430 gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~ 509 (781)
++| +++.|+..... . .+|.+|++|....+...
T Consensus 104 ~~p-v~~~h~~~~~~---------------~-------------~~d~ii~~S~~~~~~~~------------------- 135 (342)
T 2iuy_A 104 GTA-FISSHHFTTRP---------------V-------------NPVGCTYSSRAQRAHCG------------------- 135 (342)
T ss_dssp TCE-EEEEECSSSBC---------------S-------------CCTTEEESCHHHHHHTT-------------------
T ss_pred CCC-EEEecCCCCCc---------------c-------------cceEEEEcCHHHHHHHh-------------------
Confidence 999 99999864421 0 18999999987765211
Q ss_pred eeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHH
Q 003987 510 VVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTG 589 (781)
Q Consensus 510 v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~ 589 (781)
. ..++.+||||+|.+.|.+... . .+++++|+++||+.+.||++.
T Consensus 136 -----~--~~~~~vi~ngvd~~~~~~~~~--------------------------~---~~~~~~i~~vG~~~~~Kg~~~ 179 (342)
T 2iuy_A 136 -----G--GDDAPVIPIPVDPARYRSAAD--------------------------Q---VAKEDFLLFMGRVSPHKGALE 179 (342)
T ss_dssp -----C--CTTSCBCCCCBCGGGSCCSTT--------------------------C---CCCCSCEEEESCCCGGGTHHH
T ss_pred -----c--CCceEEEcCCCChhhcCcccc--------------------------c---CCCCCEEEEEeccccccCHHH
Confidence 1 458889999999987766431 0 234568999999999999999
Q ss_pred HHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEE
Q 003987 590 LVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAF 669 (781)
Q Consensus 590 LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvf 669 (781)
+++|++++ +++|+|+|+|+. .+.+++++++++ ++|+|+| .++..++..+++. +|++
T Consensus 180 li~a~~~~-----~~~l~i~G~g~~------------~~~l~~~~~~~~--~~v~~~g----~~~~~~l~~~~~~-adv~ 235 (342)
T 2iuy_A 180 AAAFAHAC-----GRRLVLAGPAWE------------PEYFDEITRRYG--STVEPIG----EVGGERRLDLLAS-AHAV 235 (342)
T ss_dssp HHHHHHHH-----TCCEEEESCCCC------------HHHHHHHHHHHT--TTEEECC----CCCHHHHHHHHHH-CSEE
T ss_pred HHHHHHhc-----CcEEEEEeCccc------------HHHHHHHHHHhC--CCEEEec----cCCHHHHHHHHHh-CCEE
Confidence 99999987 689999999976 567788888887 7899999 6778899999995 9999
Q ss_pred EEcCC----------CCCCcHHHHHHHHcCCcEEEcCcccccccccc--CCeEEEECCCCHHHHHHHHHHHHHhccCCHH
Q 003987 670 VQPAF----------YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEH--GASGFHIDPYHPDQAAELMADFFGKCKENPS 737 (781)
Q Consensus 670 V~PS~----------~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~d--g~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~ 737 (781)
|+||. .|+||++++|||+||+|||+|+.||..|++.+ +.+|+++++ |+++++++|.+++ +
T Consensus 236 v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~----~--- 307 (342)
T 2iuy_A 236 LAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLP----A--- 307 (342)
T ss_dssp EECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC----C---
T ss_pred EECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-CHHHHHHHHHHHH----H---
Confidence 99999 89999999999999999999999999999999 999999999 9999999997765 3
Q ss_pred HHHHHHHHHHHHHHHhcCcchhhhccchHHHHH
Q 003987 738 HWKKISDGGLKRIYERLVVSSDGIVDPSPFVIN 770 (781)
Q Consensus 738 ~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll~ 770 (781)
++++++++.++|||+.. ++.|.+++.
T Consensus 308 -----~~~~~~~~~~~~s~~~~--~~~~~~~~~ 333 (342)
T 2iuy_A 308 -----SDEVRRAAVRLWGHVTI--AERYVEQYR 333 (342)
T ss_dssp -----HHHHHHHHHHHHBHHHH--HHHHHHHHH
T ss_pred -----HHHHHHHHHHhcCHHHH--HHHHHHHHH
Confidence 77889999999999765 344444444
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=4.4e-33 Score=312.73 Aligned_cols=353 Identities=10% Similarity=0.007 Sum_probs=229.2
Q ss_pred CCceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCccCcceee
Q 003987 276 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLER 355 (781)
Q Consensus 276 p~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~~~~~~e~ 355 (781)
+..|||++++++..|+ ...||.. .+. +|+++|+++||+|+ |+|+..... ......
T Consensus 44 ~~~mrI~~v~~~~~p~-------~~~GG~~-~v~--------~la~~L~~~GheV~----Vvt~~~~~~-----~~~~~~ 98 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQE-------HMFGGIS-TAL--------KLFEQFDNKKFKKR----IILTDATPN-----PKDLQS 98 (413)
T ss_dssp CCSCEEEEEESCCCGG-------GCSHHHH-HHH--------HHHTTSCTTTCEEE----EEESSCCCC-----HHHHGG
T ss_pred CCCceEEEEeCCCCcc-------ccccHHH-HHH--------HHHHHHHHcCCceE----EEEecCCCC-----hHHHHh
Confidence 3459999999887653 1247774 466 78888999999999 999863210 000011
Q ss_pred ecCCCCeEEEEeccCCCcccccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHH-------
Q 003987 356 VSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYK------- 428 (781)
Q Consensus 356 v~~~~~~~I~rvp~~~~~~~~~~~isr~~i~~yl~~f~~~~~~~i~~~~~~kpDIIh~~~~~~~lva~llar~------- 428 (781)
+. .... .|+.....+.. . +..+... ...... ..+||+||++++.+...+..+.+.
T Consensus 99 ~~---~~~~--~~~~~~~~~~~-~-----i~~~~~~-----~~~~~~--~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~ 160 (413)
T 2x0d_A 99 FK---SFKY--VMPEEDKDFAL-Q-----IVPFNDR-----YNRTIP--VAKHDIFIATAWWTAYAAQRIVSWQSDTYGI 160 (413)
T ss_dssp GT---TSEE--CCTTCCCCCSE-E-----EEECSCC-----TTCCEE--ECTTEEEEECSHHHHHHHHHHHHHHHHHHTC
T ss_pred hh---ccce--eeccCCccccc-e-----eeecccc-----cccccc--CCCCCEEEEehHHHHHHHHHhhhhhhhhccc
Confidence 11 1111 11111100000 0 0000000 000000 137999999987665555444211
Q ss_pred cCCcEEEEecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCC--EEEecCHHHHhhcccccccccccccccccc
Q 003987 429 MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNAD--FIITSTYQEIAGTKNTVGQYESHTAFTLPG 506 (781)
Q Consensus 429 ~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD--~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ 506 (781)
...+.+..+|+.++..+..... + ......+..++ .+|++|....+.+++
T Consensus 161 ~~~~~~~~v~~~~~~~~~~~~~--------~------~~~~~~~~~~~~~~vi~~S~~~~~~l~~--------------- 211 (413)
T 2x0d_A 161 PPNKILYIIQDFEPGFYQWSSQ--------Y------VLAESTYKYRGPQIAVFNSELLKQYFNN--------------- 211 (413)
T ss_dssp CCCCEEEEECSCGGGGSCSSHH--------H------HHHHHTTSCCSCEEEEEESHHHHHHHHH---------------
T ss_pred ccCcEEEEEeechhhcCccChH--------H------HHHHHHhccCCceEEEEcCHHHHHHHHH---------------
Confidence 2457787888765432211110 0 11223344444 588899877653221
Q ss_pred ceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeec-cCCC
Q 003987 507 LYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARL-DHVK 585 (781)
Q Consensus 507 ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL-~~~K 585 (781)
.|++ .+++.+++||+|.+.|.+.. .+ .++++.|+++||+ .+.|
T Consensus 212 -----~g~~--~~~~~~i~~g~d~~~~~~~~--------------------------~~---~~~~~~il~~gr~~~~~K 255 (413)
T 2x0d_A 212 -----KGYN--FTDEYFFQPKINTTLKNYIN--------------------------DK---RQKEKIILVYGRPSVKRN 255 (413)
T ss_dssp -----HTCC--CSEEEEECCCCCHHHHTTTT--------------------------SC---CCCCSEEEEEECTTCGGG
T ss_pred -----cCCC--CCceEEeCCCcCchhhcccc--------------------------cc---cCCCCEEEEEecCchhcc
Confidence 1332 35788999999976543310 11 2356688899997 6899
Q ss_pred ChHHHHHHHHHhhccCCC---eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHH
Q 003987 586 NMTGLVECYGKNSQLREL---VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYI 662 (781)
Q Consensus 586 gl~~LieA~~~l~~~~~~---v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~l 662 (781)
|++.+++|++++.+..|+ ++|+|+|+|+.. .++++.++|+|+| .++.+++..+|
T Consensus 256 g~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-------------------~~l~~~~~v~f~G----~~~~~~l~~~~ 312 (413)
T 2x0d_A 256 AFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-------------------IALGKGIHLNSLG----KLTLEDYADLL 312 (413)
T ss_dssp CHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-------------------EEEETTEEEEEEE----SCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-------------------hhcCCcCcEEEcC----CCCHHHHHHHH
Confidence 999999999999877665 899999998651 2456778999999 67789999999
Q ss_pred HccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHH
Q 003987 663 ADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKI 742 (781)
Q Consensus 663 a~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~ 742 (781)
+. +|+||+||.+|+||++++||||||+|||+++ ||..|+|.++.+|++++|+|++++|++|.+++ +|++.+++
T Consensus 313 ~~-adv~v~pS~~E~~g~~~lEAmA~G~PVV~~~-~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll----~~~~~~~~- 385 (413)
T 2x0d_A 313 KR-SSIGISLMISPHPSYPPLEMAHFGLRVITNK-YENKDLSNWHSNIVSLEQLNPENIAETLVELC----MSFNNRDV- 385 (413)
T ss_dssp HH-CCEEECCCSSSSCCSHHHHHHHTTCEEEEEC-BTTBCGGGTBTTEEEESSCSHHHHHHHHHHHH----HHTC-----
T ss_pred Hh-CCEEEEecCCCCCCcHHHHHHhCCCcEEEeC-CCcchhhhcCCCEEEeCCCCHHHHHHHHHHHH----cCHHHHHH-
Confidence 95 9999999999999999999999999999964 66789999999999999999999999998887 67777766
Q ss_pred HHHHHHHHHHhcCcchh-hhccchHHHH
Q 003987 743 SDGGLKRIYERLVVSSD-GIVDPSPFVI 769 (781)
Q Consensus 743 s~~a~~~~~~~ysw~~~-~il~~ye~ll 769 (781)
+|++++ ++|||+.. .-.+.|.+++
T Consensus 386 --~~~~~~-~~~~W~~~~~~~~~~~~l~ 410 (413)
T 2x0d_A 386 --DKKESS-NMMFYINEFNEFSFIKEIE 410 (413)
T ss_dssp -----CCB-SCGGGCCCC---TTHHHHH
T ss_pred --hHHHHH-HhCCHHHHHHHHHHHHHHH
Confidence 566666 58999876 3356677665
No 16
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.97 E-value=6.9e-30 Score=278.36 Aligned_cols=340 Identities=12% Similarity=0.045 Sum_probs=235.5
Q ss_pred ceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCccCcceeeec
Q 003987 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVS 357 (781)
Q Consensus 278 ~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~~~~~~e~v~ 357 (781)
.|||++++. .+||.+..+. .|+++|.++||+|+ ++|...... . +..
T Consensus 6 ~mkIl~~~~-------------~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~-----~---~~~- 51 (364)
T 1f0k_A 6 GKRLMVMAG-------------GTGGHVFPGL--------AVAHHLMAQGWQVR----WLGTADRME-----A---DLV- 51 (364)
T ss_dssp -CEEEEECC-------------SSHHHHHHHH--------HHHHHHHTTTCEEE----EEECTTSTH-----H---HHG-
T ss_pred CcEEEEEeC-------------CCccchhHHH--------HHHHHHHHcCCEEE----EEecCCcch-----h---hhc-
Confidence 489999971 1478777777 77778899999999 888653210 0 001
Q ss_pred CCCCeEEEEeccCCCcc-cccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcEEEE
Q 003987 358 GTEHTHILRVPFRSEKG-ILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTI 436 (781)
Q Consensus 358 ~~~~~~I~rvp~~~~~~-~~~~~isr~~i~~yl~~f~~~~~~~i~~~~~~kpDIIh~~~~~~~lva~llar~~gvp~v~t 436 (781)
...++.+..++.....+ ....++ ...+..+ .....+.+.+.+. +||+||++....++.+.++++..++|++++
T Consensus 52 ~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~l~~~l~~~---~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 125 (364)
T 1f0k_A 52 PKHGIEIDFIRISGLRGKGIKALI--AAPLRIF-NAWRQARAIMKAY---KPDVVLGMGGYVSGPGGLAAWSLGIPVVLH 125 (364)
T ss_dssp GGGTCEEEECCCCCCTTCCHHHHH--TCHHHHH-HHHHHHHHHHHHH---CCSEEEECSSTTHHHHHHHHHHTTCCEEEE
T ss_pred cccCCceEEecCCccCcCccHHHH--HHHHHHH-HHHHHHHHHHHhc---CCCEEEEeCCcCchHHHHHHHHcCCCEEEE
Confidence 11256777766543111 000000 0011111 2223344445544 899999998776677788888999999999
Q ss_pred ecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCC
Q 003987 437 AHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDV 516 (781)
Q Consensus 437 ~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~ 516 (781)
.|+.... + ...+..+.+|.+++++...
T Consensus 126 ~~~~~~~--------~--------------~~~~~~~~~d~v~~~~~~~------------------------------- 152 (364)
T 1f0k_A 126 EQNGIAG--------L--------------TNKWLAKIATKVMQAFPGA------------------------------- 152 (364)
T ss_dssp ECSSSCC--------H--------------HHHHHTTTCSEEEESSTTS-------------------------------
T ss_pred ecCCCCc--------H--------------HHHHHHHhCCEEEecChhh-------------------------------
Confidence 9974310 0 1123556799999877421
Q ss_pred CCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCE-EEEEeeccCCCChHHHHHHHH
Q 003987 517 FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPI-VFSMARLDHVKNMTGLVECYG 595 (781)
Q Consensus 517 f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~i-Il~vGRL~~~Kgl~~LieA~~ 595 (781)
++ ++.+++||+|.+.|.+.... +.+++ ++++++ +++.|++.+.||.+.+++|++
T Consensus 153 ~~-~~~~i~n~v~~~~~~~~~~~----------------------~~~~~--~~~~~~il~~~g~~~~~k~~~~li~a~~ 207 (364)
T 1f0k_A 153 FP-NAEVVGNPVRTDVLALPLPQ----------------------QRLAG--REGPVRVLVVGGSQGARILNQTMPQVAA 207 (364)
T ss_dssp SS-SCEECCCCCCHHHHTSCCHH----------------------HHHTT--CCSSEEEEEECTTTCCHHHHHHHHHHHH
T ss_pred cC-CceEeCCccchhhcccchhh----------------------hhccc--CCCCcEEEEEcCchHhHHHHHHHHHHHH
Confidence 12 67799999998765443211 12343 344554 555679999999999999999
Q ss_pred HhhccCCCeE-EEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCC
Q 003987 596 KNSQLRELVN-LVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF 674 (781)
Q Consensus 596 ~l~~~~~~v~-LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~ 674 (781)
++.+ +++ ++++|+++ .+.+++++++++++ +|+|+|++ +++..+|+. +|++|+||.
T Consensus 208 ~l~~---~~~~l~i~G~~~-------------~~~l~~~~~~~~~~-~v~~~g~~------~~~~~~~~~-ad~~v~~sg 263 (364)
T 1f0k_A 208 KLGD---SVTIWHQSGKGS-------------QQSVEQAYAEAGQP-QHKVTEFI------DDMAAAYAW-ADVVVCRSG 263 (364)
T ss_dssp HHGG---GEEEEEECCTTC-------------HHHHHHHHHHTTCT-TSEEESCC------SCHHHHHHH-CSEEEECCC
T ss_pred HhcC---CcEEEEEcCCch-------------HHHHHHHHhhcCCC-ceEEecch------hhHHHHHHh-CCEEEECCc
Confidence 9865 688 56677764 24677888888874 79999954 357888885 999999983
Q ss_pred CCCCcHHHHHHHHcCCcEEEcCccccc--------cccccCCeEEEECCCC--HHHHHHHHHHHHHhccCCHHHHHHHHH
Q 003987 675 YEAFGLTVVEAMTCGLPTFATCHGGPA--------EIIEHGASGFHIDPYH--PDQAAELMADFFGKCKENPSHWKKISD 744 (781)
Q Consensus 675 ~E~fGltvlEAMa~GlPVVaT~~gG~~--------EiI~dg~~G~lv~p~d--~~~lA~~I~~~l~~l~~dp~~~~~~s~ 744 (781)
|++++|||+||+|||+|+.+|.. +++.+| .|++++++| +++++++|. ++ |++.+++|++
T Consensus 264 ----~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~----~l--~~~~~~~~~~ 332 (364)
T 1f0k_A 264 ----ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLA----GW--SRETLLTMAE 332 (364)
T ss_dssp ----HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHH----TC--CHHHHHHHHH
T ss_pred ----hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHH----hc--CHHHHHHHHH
Confidence 99999999999999999999864 466555 599999988 999999994 44 9999999999
Q ss_pred HHHHHHHHhcCcchhhhccchHHHHHhcC
Q 003987 745 GGLKRIYERLVVSSDGIVDPSPFVINVIS 773 (781)
Q Consensus 745 ~a~~~~~~~ysw~~~~il~~ye~ll~~~~ 773 (781)
++++.+ ++|+|+. +++.|++++...+
T Consensus 333 ~~~~~~-~~~~~~~--~~~~~~~~y~~~~ 358 (364)
T 1f0k_A 333 RARAAS-IPDATER--VANEVSRVARALE 358 (364)
T ss_dssp HHHHTC-CTTHHHH--HHHHHHHHHTTC-
T ss_pred HHHHhh-ccCHHHH--HHHHHHHHHHHHH
Confidence 999887 5899954 6677888875443
No 17
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.97 E-value=2.6e-31 Score=297.25 Aligned_cols=245 Identities=13% Similarity=0.044 Sum_probs=178.0
Q ss_pred CceEEEEcCCCchHHHHHHHHHcCCcEEEEecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHH
Q 003987 407 FPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEI 486 (781)
Q Consensus 407 kpDIIh~~~~~~~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~ 486 (781)
++|+||.+...... ...+++..++|++++.|+..... ... ...+. ...+..+++.+|.||++|....
T Consensus 124 ~~DvIh~~~~~~~~-~~~~~~~~~~p~v~~~h~~~~~~------~~~----~~~~~--~~~~~~~~~~ad~vi~~S~~~~ 190 (406)
T 2hy7_A 124 ESDVIVFESGIAVA-FIELAKRVNPAAKLVYRASDGLS------TIN----VASYI--EREFDRVAPTLDVIALVSPAMA 190 (406)
T ss_dssp HCSEEEEESSGGGG-GHHHHHHHCTTSEEEEEESSCHH------HHT----CCHHH--HHHHHHHGGGCSEEEESCGGGG
T ss_pred CCCEEEECCchHHH-HHHHHHHhCCCEEEEEeccchhh------ccc----ccHHH--HHHHHHHHHhCCEEEEcCHHHH
Confidence 68999943322222 12566778999999999753200 000 00011 1234567899999999998764
Q ss_pred hhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCC
Q 003987 487 AGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGT 566 (781)
Q Consensus 487 ~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~~g~ 566 (781)
+. +. .. . ++.+||||+|.+.|.+... .
T Consensus 191 ~~----~~------------------~~---~-~i~vipngvd~~~f~~~~~-------------------------~-- 217 (406)
T 2hy7_A 191 AE----VV------------------SR---D-NVFHVGHGVDHNLDQLGDP-------------------------S-- 217 (406)
T ss_dssp GG----CS------------------CS---T-TEEECCCCBCTTHHHHHCS-------------------------C--
T ss_pred HH----HH------------------hc---C-CEEEEcCCcChHhcCcccc-------------------------c--
Confidence 41 10 00 2 8999999999876532110 0
Q ss_pred CCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEe
Q 003987 567 LSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 646 (781)
Q Consensus 567 l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~fl 646 (781)
...++++|+|+||+.+.||+ ++ .+.+..++++|+|+|+|+ ++++++.++|+|+
T Consensus 218 -~~~~~~~i~~vGrl~~~Kg~---~~---~l~~~~~~~~l~ivG~g~--------------------~~~~~l~~~V~f~ 270 (406)
T 2hy7_A 218 -PYAEGIHAVAVGSMLFDPEF---FV---VASKAFPQVTFHVIGSGM--------------------GRHPGYGDNVIVY 270 (406)
T ss_dssp -SCCSSEEEEEECCTTBCHHH---HH---HHHHHCTTEEEEEESCSS--------------------CCCTTCCTTEEEE
T ss_pred -ccCCCcEEEEEeccccccCH---HH---HHHHhCCCeEEEEEeCch--------------------HHhcCCCCCEEEc
Confidence 02234789999999999998 33 333446889999999884 3456788999999
Q ss_pred ccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHH-------HcCCcEEEcCccccccccccCCeEEE-ECCCCH
Q 003987 647 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAM-------TCGLPTFATCHGGPAEIIEHGASGFH-IDPYHP 718 (781)
Q Consensus 647 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAM-------a~GlPVVaT~~gG~~EiI~dg~~G~l-v~p~d~ 718 (781)
| .++.+++..+|+. +|++|+||..|+||++++||| |||+|||+|+. +.++.+|++ ++|+|+
T Consensus 271 G----~~~~~~l~~~~~~-adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d~ 339 (406)
T 2hy7_A 271 G----EMKHAQTIGYIKH-ARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGNA 339 (406)
T ss_dssp C----CCCHHHHHHHHHT-CSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTCH
T ss_pred C----CCCHHHHHHHHHh-cCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEeCCCCH
Confidence 9 6778899999995 999999999999999999999 99999999987 677889999 999999
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchh--hhccc--hHHHH
Q 003987 719 DQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSD--GIVDP--SPFVI 769 (781)
Q Consensus 719 ~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~--~il~~--ye~ll 769 (781)
++++++|.+++ +|++ + ...++|||+.. .+++. |+++.
T Consensus 340 ~~la~ai~~ll----~~~~---------~-~~~~~~sw~~~a~~~~~~~~y~~~~ 380 (406)
T 2hy7_A 340 DSVIAAITQAL----EAPR---------V-RYRQCLNWSDTTDRVLDPRAYPETR 380 (406)
T ss_dssp HHHHHHHHHHH----HCCC---------C-CCSCCCBHHHHHHHHHCGGGSGGGB
T ss_pred HHHHHHHHHHH----hCcc---------h-hhhhcCCHHHHHHHHHHhhcccccC
Confidence 99999999887 5655 1 23478999876 55555 65543
No 18
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.96 E-value=2.4e-29 Score=290.82 Aligned_cols=336 Identities=14% Similarity=0.149 Sum_probs=220.5
Q ss_pred CCceEEEEcCCCchHHHHHHHHH-cCCcEEEEecCCcccCC----CCChhhHhh--hh-----ccccchhhhhHHHHHHh
Q 003987 406 GFPDFIIGNYSDGNLVASLLAYK-MGITQCTIAHALEKTKY----PDSDIYWKK--FD-----EKYHFSCQFTADLIAMN 473 (781)
Q Consensus 406 ~kpDIIh~~~~~~~lva~llar~-~gvp~v~t~H~l~~~k~----~~s~~~~k~--~~-----~~y~f~~~~~~e~~a~~ 473 (781)
.+|||+|+|+|..++++.++++. .+++.|+|+|++...++ ...++++.. +. ....+...+..++.+..
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKaga~ 259 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAH 259 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHHHHH
Confidence 67999999999998888888754 58999999999853333 111223211 00 00111223445677888
Q ss_pred hCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhh
Q 003987 474 NADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQL 553 (781)
Q Consensus 474 ~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~ 553 (781)
.||.|+|+|+..+...+... +. .+.. +||||+|.+.|.|...........+..+.+.
T Consensus 260 ~AD~ITTVS~~yA~Ei~~Ll-------------------~r---~~d~-iIpNGID~~~f~p~~~~~~~k~~aK~klq~~ 316 (725)
T 3nb0_A 260 SADVFTTVSQITAFEAEHLL-------------------KR---KPDG-ILPNGLNVIKFQAFHEFQNLHALKKEKINDF 316 (725)
T ss_dssp HSSEEEESSHHHHHHHHHHT-------------------SS---CCSE-ECCCCBCCCCCSSTTHHHHHHHHHHHHHHHH
T ss_pred hCCEEEECCHHHHHHHHHHh-------------------cC---CCCE-EEcCCccccccCcchhhHHHHHHHHHHHHHH
Confidence 99999999998766433211 11 2233 3999999999998633221111111122221
Q ss_pred ccCccccccccCCCCC-CCCCEEEEEeecc-CCCChHHHHHHHHHhhcc-------CCCeEEEEEeCcCCCC--------
Q 003987 554 LFDPEQNDEHVGTLSD-RSKPIVFSMARLD-HVKNMTGLVECYGKNSQL-------RELVNLVVVAGYIDVN-------- 616 (781)
Q Consensus 554 l~~~~~~~~~~g~l~~-~~k~iIl~vGRL~-~~Kgl~~LieA~~~l~~~-------~~~v~LvIVG~g~~~~-------- 616 (781)
+.. .....+++ + +++++|+.+||+. +.||++.+++|+.++... ..-+.|+|+..+....
T Consensus 317 l~~--~~~~~l~l--~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~ 392 (725)
T 3nb0_A 317 VRG--HFHGCFDF--DLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQ 392 (725)
T ss_dssp HHH--HTTTCCCS--CGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHH
T ss_pred HHh--hcccCCCC--CCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcch
Confidence 100 00011333 3 3456677789999 799999999999988642 2346788888764310
Q ss_pred -----------------------------------CCc-chHHHH---------------------------------HH
Q 003987 617 -----------------------------------KSK-DREEIA---------------------------------EI 627 (781)
Q Consensus 617 -----------------------------------~~~-d~ee~~---------------------------------~~ 627 (781)
+.+ |.++.- ..
T Consensus 393 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~ 472 (725)
T 3nb0_A 393 AEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDAN 472 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGG
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCc
Confidence 001 111100 11
Q ss_pred HHHHHHHHHcCCCCc------EEEec-cccC--cCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc
Q 003987 628 EKMHELMKTYKLDGQ------FRWIA-AQTN--RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG 698 (781)
Q Consensus 628 ~~l~~li~elgL~~~------V~flG-~~~~--~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~g 698 (781)
+.+...++++++.++ |.|++ +.++ .+-..++..+++. +|+||+||++|+||++++||||||+|||+|+.|
T Consensus 473 D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~-advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~g 551 (725)
T 3nb0_A 473 DLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRG-CHLGVFPSYYEPWGYTPAECTVMGVPSITTNVS 551 (725)
T ss_dssp CHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHH-CSEEECCCSSBSSCHHHHHHHHTTCCEEEETTB
T ss_pred cHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhh-ceEEEeccccCCCCHHHHHHHHcCCCEEEeCCC
Confidence 223344566677655 56665 2221 1122357888884 999999999999999999999999999999999
Q ss_pred ccccccccCC-------eEEEE---CCCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcCcchh--hhccch
Q 003987 699 GPAEIIEHGA-------SGFHI---DPYHPDQAAELMADFFGKCK-ENPSHWKKISDGGLKRIYERLVVSSD--GIVDPS 765 (781)
Q Consensus 699 G~~EiI~dg~-------~G~lv---~p~d~~~lA~~I~~~l~~l~-~dp~~~~~~s~~a~~~~~~~ysw~~~--~il~~y 765 (781)
|+.|.|.++. +|+++ ++.|+++++++|.+++..+. .++..+.+++++|++.+ ++|+|+.. .++++|
T Consensus 552 G~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Y 630 (725)
T 3nb0_A 552 GFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKAR 630 (725)
T ss_dssp HHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHH
T ss_pred ChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 9999998763 69988 45678888888877775543 47888999999998777 69999886 666677
Q ss_pred HHHHH
Q 003987 766 PFVIN 770 (781)
Q Consensus 766 e~ll~ 770 (781)
++++.
T Consensus 631 e~aL~ 635 (725)
T 3nb0_A 631 QLALR 635 (725)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77664
No 19
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.96 E-value=3.7e-28 Score=281.45 Aligned_cols=175 Identities=8% Similarity=-0.008 Sum_probs=152.1
Q ss_pred ccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEe-CcCCCCCCcchHHHHHHHHHHHHHHHcCC
Q 003987 561 DEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVA-GYIDVNKSKDREEIAEIEKMHELMKTYKL 639 (781)
Q Consensus 561 ~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG-~g~~~~~~~d~ee~~~~~~l~~li~elgL 639 (781)
++.+|+ ++ +++++++||+.+ ||++.+++++.++.+..|+++|+|+| +|+. .+.++++++++|+
T Consensus 368 r~~~~~--~~-~~~v~~~g~~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~------------~~~l~~~~~~~~l 431 (568)
T 2vsy_A 368 RTQCGL--PE-QGVVLCCFNNSY-KLNPQSMARMLAVLREVPDSVLWLLSGPGEA------------DARLRAFAHAQGV 431 (568)
T ss_dssp TGGGTC--CT-TSCEEEECCCGG-GCCHHHHHHHHHHHHHCTTCEEEEECCSTTH------------HHHHHHHHHHTTC
T ss_pred ccccCC--CC-CCEEEEeCCccc-cCCHHHHHHHHHHHHhCCCcEEEEecCCHHH------------HHHHHHHHHHcCC
Confidence 455776 33 345669999999 99999999999998888999999999 6654 6789999999999
Q ss_pred C-CcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEE-------cCcc-------cccccc
Q 003987 640 D-GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFA-------TCHG-------GPAEII 704 (781)
Q Consensus 640 ~-~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVa-------T~~g-------G~~EiI 704 (781)
. ++|+|+| .++.+++..+|+. +|+||+||.+ +||++++|||+||+|||+ |+.| |..|+|
T Consensus 432 ~~~~v~~~g----~~~~~~~~~~~~~-adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v 505 (568)
T 2vsy_A 432 DAQRLVFMP----KLPHPQYLARYRH-ADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMN 505 (568)
T ss_dssp CGGGEEEEC----CCCHHHHHHHGGG-CSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGB
T ss_pred ChhHEEeeC----CCCHHHHHHHHhc-CCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhh
Confidence 8 9999999 5667899999995 9999999999 999999999999999999 9999 999998
Q ss_pred ccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH--HHhcCcchh--hhccchHHHHHh
Q 003987 705 EHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRI--YERLVVSSD--GIVDPSPFVINV 771 (781)
Q Consensus 705 ~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~--~~~ysw~~~--~il~~ye~ll~~ 771 (781)
.+ |+++++++|.+++ .|++.+++|++++++++ .+.|||+.+ .+.+.|++++..
T Consensus 506 ~~----------~~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~ 562 (568)
T 2vsy_A 506 VA----------DDAAFVAKAVALA----SDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARR 562 (568)
T ss_dssp CS----------SHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHT
T ss_pred cC----------CHHHHHHHHHHHh----cCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55 8999999998887 79999999999999998 788999776 555556665543
No 20
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.96 E-value=1.8e-27 Score=272.03 Aligned_cols=312 Identities=11% Similarity=0.028 Sum_probs=210.1
Q ss_pred CCceEEEEcCCCchHHHHHHHHHc-CCcEEEEecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHH
Q 003987 406 GFPDFIIGNYSDGNLVASLLAYKM-GITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 484 (781)
Q Consensus 406 ~kpDIIh~~~~~~~lva~llar~~-gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~ 484 (781)
..+|+||+|.+...+++..+++.. ++|++++.|..++. +. .++.+ .....-...+..+|.+...+..
T Consensus 122 ~~~DiV~vHdyhl~~l~~~lr~~~~~~~i~~~~H~pfp~----~~-~~~~l-------p~~~~il~~ll~~d~i~f~~~~ 189 (482)
T 1uqt_A 122 QDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPT----PE-IFNAL-------PTYDTLLEQLCDYDLLGFQTEN 189 (482)
T ss_dssp CTTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCCCC----HH-HHTTS-------TTHHHHHHHHTTSSEEEESSHH
T ss_pred CCCCEEEEECchHHHHHHHHHHhCCCCcEEEEEcCCCCC----HH-HHhhC-------ccHHHHHHhhhccCeEEEECHH
Confidence 367999999987777777666654 79999999975331 11 11111 0101112235567887777655
Q ss_pred HHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcH-----HHHHHhhhhcchhhhccCccc
Q 003987 485 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSE-----KQKRLTALHGSIEQLLFDPEQ 559 (781)
Q Consensus 485 ~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~-----~~~r~~~~~~~i~~~l~~~~~ 559 (781)
....+-....+...... ...+. ....| ...++.+||||||.+.|.+... ....+
T Consensus 190 ~~~~f~~~~~~~l~~~~-~~~~~-~~~~g---~~~~v~vip~GID~~~f~~~~~~~~~~~~~~l---------------- 248 (482)
T 1uqt_A 190 DRLAFLDCLSNLTRVTT-RSAKS-HTAWG---KAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQL---------------- 248 (482)
T ss_dssp HHHHHHHHHHHHSCEEE-ETTTE-EEETT---EEEEEEECCCCCCHHHHHHHHHSCCCHHHHHH----------------
T ss_pred HHHHHHHHHHHHhCCcc-ccCCe-EEECC---eEEEEEEEeccCCHHHHHHHhcCcchHHHHHH----------------
Confidence 43321111100000000 00011 11112 1357899999999887754211 01111
Q ss_pred cccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCC----CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHH
Q 003987 560 NDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRE----LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK 635 (781)
Q Consensus 560 ~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~----~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~ 635 (781)
++++| ++++|+++||+++.||+..+++|++++.+.+| +++|++||+... +.-++..+..+.+++++.
T Consensus 249 -r~~~~-----~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~---~~~~~~~~l~~~l~~l~~ 319 (482)
T 1uqt_A 249 -KAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSR---GDVQAYQDIRHQLENEAG 319 (482)
T ss_dssp -HHHTT-----TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCS---TTSHHHHHHHHHHHHHHH
T ss_pred -HHHhC-----CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCc---cchHHHHHHHHHHHHHHH
Confidence 12232 57899999999999999999999999877665 478999997432 111233344566666666
Q ss_pred HcC----CC--CcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCC-----cEEEcCcccccccc
Q 003987 636 TYK----LD--GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGL-----PTFATCHGGPAEII 704 (781)
Q Consensus 636 elg----L~--~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~Gl-----PVVaT~~gG~~EiI 704 (781)
+++ .. ..|+|++ ..++.+++..+|+. +|+||+||.+||||++++||||||+ |+|+|+.+|..+.+
T Consensus 320 ~in~~~g~~~~~~v~~~~---g~v~~~el~~ly~~-ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l 395 (482)
T 1uqt_A 320 RINGKYGQLGWTPLYYLN---QHFDRKLLMKIFRY-SDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL 395 (482)
T ss_dssp HHHHHHCBTTBCSEEEEC---SCCCHHHHHHHHHH-CSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTC
T ss_pred HHhhhcccCCCceEEEeC---CCCCHHHHHHHHHH-ccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHh
Confidence 543 22 2377643 26788999999994 9999999999999999999999997 99999988888887
Q ss_pred ccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhc
Q 003987 705 EHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVI 772 (781)
Q Consensus 705 ~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll~~~ 772 (781)
. +|++++|+|++++|++|.++++ .+++.++++++++++++ ++|||+ .+++.|.+.+...
T Consensus 396 ~---~g~lv~p~d~~~lA~ai~~lL~---~~~~~r~~~~~~~~~~v-~~~s~~--~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 396 T---SALIVNPYDRDEVAAALDRALT---MSLAERISRHAEMLDVI-VKNDIN--HWQECFISDLKQI 454 (482)
T ss_dssp T---TSEEECTTCHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHH-HHTCHH--HHHHHHHHHHHHS
T ss_pred C---CeEEECCCCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHH-HhCCHH--HHHHHHHHHHHhc
Confidence 2 7999999999999999998882 36788999999999999 569995 4667777777654
No 21
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.95 E-value=4.4e-28 Score=264.87 Aligned_cols=284 Identities=14% Similarity=0.136 Sum_probs=197.5
Q ss_pred HHHHHHHHHHcCCCceEEEEcCCC-chHHHHHHHHHcCCcEEEEecCCcccCCCCChhhHhhhhccccchhhhhHHHHHH
Q 003987 394 EDVGSEITAELQGFPDFIIGNYSD-GNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAM 472 (781)
Q Consensus 394 ~~~~~~i~~~~~~kpDIIh~~~~~-~~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~ 472 (781)
..+.+.+.+. +||+||+|... .++.+.++++..++|++++.|+... + . .+.. +. .........
T Consensus 85 ~~l~~~l~~~---~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~--~---~-~~~~------~~-~~~~~~~~~ 148 (375)
T 3beo_A 85 EGLDKVMKEA---KPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLRT--W---D-KYSP------YP-EEMNRQLTG 148 (375)
T ss_dssp HHHHHHHHHH---CCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCCC--S---C-TTSS------TT-HHHHHHHHH
T ss_pred HHHHHHHHHh---CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccc--c---c-ccCC------Ch-hHhhhhHHh
Confidence 3445555554 89999998764 4666778888999999988776421 0 0 0000 00 001112234
Q ss_pred hhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCC-CcCCCCCCCcHHHHHHhhhhcchh
Q 003987 473 NNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG-ADMDIYFPYSEKQKRLTALHGSIE 551 (781)
Q Consensus 473 ~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnG-vD~~~f~p~~~~~~r~~~~~~~i~ 551 (781)
+.+|.++++|....+.+.+ .|++ ..++.+|+|| +|...+.+........
T Consensus 149 ~~~d~ii~~s~~~~~~~~~--------------------~g~~--~~~i~vi~n~~~d~~~~~~~~~~~~~~-------- 198 (375)
T 3beo_A 149 VMADLHFSPTAKSATNLQK--------------------ENKD--ESRIFITGNTAIDALKTTVKETYSHPV-------- 198 (375)
T ss_dssp HHCSEEEESSHHHHHHHHH--------------------TTCC--GGGEEECCCHHHHHHHHHCCSSCCCHH--------
T ss_pred hhhheeeCCCHHHHHHHHH--------------------cCCC--cccEEEECChhHhhhhhhhhhhhhHHH--------
Confidence 4599999999877552111 1333 5689999999 7865443321000000
Q ss_pred hhccCccccccccCCCCCCCCCEEEEEeeccCC-CChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHH
Q 003987 552 QLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHV-KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKM 630 (781)
Q Consensus 552 ~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~-Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l 630 (781)
++.+ ++++.+++++||+.+. ||++.+++|++++.+..|+++++ +|+|+. ..+
T Consensus 199 ---------~~~~----~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i-~~~g~~-------------~~~ 251 (375)
T 3beo_A 199 ---------LEKL----GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVV-YPVHMN-------------PVV 251 (375)
T ss_dssp ---------HHTT----TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEE-EECCSC-------------HHH
T ss_pred ---------HHhc----cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEE-EeCCCC-------------HHH
Confidence 0111 2344567899999876 99999999999998777889865 466654 112
Q ss_pred HHHHHHc-CCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcC-ccccccccccCC
Q 003987 631 HELMKTY-KLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATC-HGGPAEIIEHGA 708 (781)
Q Consensus 631 ~~li~el-gL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~-~gG~~EiI~dg~ 708 (781)
.+.++++ +..++|+|+| .++..++..+|+. +|++|+|| |.+++|||+||+|||+|+ .||..|++.+|
T Consensus 252 ~~~~~~~~~~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g- 320 (375)
T 3beo_A 252 RETANDILGDYGRIHLIE----PLDVIDFHNVAAR-SYLMLTDS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG- 320 (375)
T ss_dssp HHHHHHHHTTCTTEEEEC----CCCHHHHHHHHHT-CSEEEECC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-
T ss_pred HHHHHHHhhccCCEEEeC----CCCHHHHHHHHHh-CcEEEECC-----CChHHHHHhcCCCEEEecCCCCCceeecCC-
Confidence 2233332 3346899998 5566799999995 99999998 778999999999999996 59999999888
Q ss_pred eEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHH
Q 003987 709 SGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVI 769 (781)
Q Consensus 709 ~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll 769 (781)
+|+++++ |+++++++|.+++ .|++.+++|++++++.+ +.|+|+. +++.+++++
T Consensus 321 ~g~~v~~-d~~~la~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~--i~~~~~~~~ 373 (375)
T 3beo_A 321 TLKLAGT-DEETIFSLADELL----SDKEAHDKMSKASNPYG-DGRASER--IVEAILKHF 373 (375)
T ss_dssp SEEECCS-CHHHHHHHHHHHH----HCHHHHHHHCCCCCTTC-CSCHHHH--HHHHHHHHT
T ss_pred ceEEcCC-CHHHHHHHHHHHH----hChHhHhhhhhcCCCCC-CCcHHHH--HHHHHHHHh
Confidence 9999987 9999999998887 79999999999988776 5788854 556666654
No 22
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.95 E-value=2.9e-27 Score=236.23 Aligned_cols=187 Identities=17% Similarity=0.212 Sum_probs=161.4
Q ss_pred ecCCCcCCCCC--CCcH-----HHHHHhhhhcchhhhccCccccccccCCCCCCCCCEEEEEeecc-CCCChHHHHHHHH
Q 003987 524 VSPGADMDIYF--PYSE-----KQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLD-HVKNMTGLVECYG 595 (781)
Q Consensus 524 IpnGvD~~~f~--p~~~-----~~~r~~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~-~~Kgl~~LieA~~ 595 (781)
||||+|.+.|. |... ... .++++|+ +++++|+++||+. +.||++.+++++.
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~~~------------------~r~~~~~---~~~~~i~~~G~~~~~~K~~~~li~a~~ 60 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERKKS------------------LLSKFGM---DEGVTFMFIGRFDRGQKGVDVLLKAIE 60 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHHHH------------------HHHHTTC---CSCEEEEEESCBCSSSSCHHHHHHHHH
T ss_pred CCCccChhhccccccccchhhHHHH------------------HHHHcCC---CCCCEEEEeeccccccCCHHHHHHHHH
Confidence 79999999998 7641 111 1234676 3456999999999 9999999999999
Q ss_pred Hhh--ccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEE-eccccCcCChHHHHHHHHccCcEEEEc
Q 003987 596 KNS--QLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRW-IAAQTNRARNGELYRYIADTKGAFVQP 672 (781)
Q Consensus 596 ~l~--~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~f-lG~~~~~v~~~el~~~la~aadvfV~P 672 (781)
++. +..++++|+|+|+++. +..+.+++++++++ +|+| +| .++.+++..+++. +|++|+|
T Consensus 61 ~l~~~~~~~~~~l~i~G~~~~----------~~~~~l~~~~~~~~---~v~~~~g----~~~~~~~~~~~~~-ad~~l~p 122 (200)
T 2bfw_A 61 ILSSKKEFQEMRFIIIGKGDP----------ELEGWARSLEEKHG---NVKVITE----MLSREFVRELYGS-VDFVIIP 122 (200)
T ss_dssp HHTTSGGGGGEEEEEECCBCH----------HHHHHHHHHHHHCT---TEEEECS----CCCHHHHHHHHTT-CSEEEEC
T ss_pred HHHhhccCCCeEEEEECCCCh----------HHHHHHHHHHHhcC---CEEEEec----cCCHHHHHHHHHH-CCEEEEC
Confidence 997 6678999999999862 23678888899886 8999 99 6778899999995 9999999
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Q 003987 673 AFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKE-NPSHWKKISDGGLKRIY 751 (781)
Q Consensus 673 S~~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~-dp~~~~~~s~~a~~~~~ 751 (781)
|.+|+||++++|||+||+|||+|+.||..|++ ++.+|++++++|+++++++|.+++ . |++.+++|++++++++.
T Consensus 123 s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~a~~~~~ 197 (200)
T 2bfw_A 123 SYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDPGELANAILKAL----ELSRSDLSKFRENCKKRAM 197 (200)
T ss_dssp CSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEEecCCCHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999998887 7 99999999999999997
Q ss_pred HhcC
Q 003987 752 ERLV 755 (781)
Q Consensus 752 ~~ys 755 (781)
+ ||
T Consensus 198 ~-fs 200 (200)
T 2bfw_A 198 S-FS 200 (200)
T ss_dssp H-TC
T ss_pred h-cC
Confidence 7 86
No 23
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.95 E-value=1e-27 Score=263.14 Aligned_cols=292 Identities=11% Similarity=0.093 Sum_probs=198.5
Q ss_pred HHHHHHHHHHcCCCceEEEEcCC-CchHHHHHHHHHcCCcEEEEecCCcccCCCCChhhHhhhhccccchhhhhHHHHHH
Q 003987 394 EDVGSEITAELQGFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAM 472 (781)
Q Consensus 394 ~~~~~~i~~~~~~kpDIIh~~~~-~~~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~ 472 (781)
..+.+.+.+. +||+||+|.. ..++.+.++++..++|++++.|++.... .|..+ . .........
T Consensus 76 ~~l~~~l~~~---~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~~------~~~~~------~-~~~~~~~~~ 139 (384)
T 1vgv_A 76 EGLKPILAEF---KPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD------LYSPW------P-EEANRTLTG 139 (384)
T ss_dssp HHHHHHHHHH---CCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSC------TTSST------T-HHHHHHHHH
T ss_pred HHHHHHHHHh---CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccccc------ccCCC------c-hHhhHHHHH
Confidence 3445555554 8999999976 4466677788889999999988763211 00000 0 000111234
Q ss_pred hhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCC-cCCCCCCCcHH--HHHHhhhhcc
Q 003987 473 NNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA-DMDIYFPYSEK--QKRLTALHGS 549 (781)
Q Consensus 473 ~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnGv-D~~~f~p~~~~--~~r~~~~~~~ 549 (781)
+.+|.++++|....+.+. ..|++ ..++.+++||+ |...+.+.... ....
T Consensus 140 ~~~d~ii~~s~~~~~~l~--------------------~~g~~--~~~i~vi~n~~~d~~~~~~~~~~~~~~~~------ 191 (384)
T 1vgv_A 140 HLAMYHFSPTETSRQNLL--------------------RENVA--DSRIFITGNTVIDALLWVRDQVMSSDKLR------ 191 (384)
T ss_dssp TTCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHHHHTTTCHHHH------
T ss_pred hhccEEEcCcHHHHHHHH--------------------HcCCC--hhhEEEeCChHHHHHHhhhhccccchhhh------
Confidence 569999999987654211 12333 56899999995 43211110000 0000
Q ss_pred hhhhccCccccccccC-CCCCCC-CCEEEEEeeccCC-CChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHH
Q 003987 550 IEQLLFDPEQNDEHVG-TLSDRS-KPIVFSMARLDHV-KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAE 626 (781)
Q Consensus 550 i~~~l~~~~~~~~~~g-~l~~~~-k~iIl~vGRL~~~-Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~ 626 (781)
.+.++.+| + +++ +.+++++||+... ||++.+++|+.++.+..++++|+++++... ..
T Consensus 192 --------~~~~~~~~~~--~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~----------~~ 251 (384)
T 1vgv_A 192 --------SELAANYPFI--DPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNP----------NV 251 (384)
T ss_dssp --------HHHHTTCTTC--CTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCH----------HH
T ss_pred --------HHHHHhcccc--CCCCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCH----------HH
Confidence 00113355 4 233 3568899999876 999999999999987778899988644211 12
Q ss_pred HHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc-cccccccc
Q 003987 627 IEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCH-GGPAEIIE 705 (781)
Q Consensus 627 ~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~-gG~~EiI~ 705 (781)
.+.+++++. ..++|+|+| .++..++..+|+. +|++|+|| |.+++|||+||+|||+|+. ||..|++.
T Consensus 252 ~~~l~~~~~---~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~~S-----g~~~lEA~a~G~PvI~~~~~~~~~e~v~ 318 (384)
T 1vgv_A 252 REPVNRILG---HVKNVILID----PQEYLPFVWLMNH-AWLILTDS-----GGIQEEAPSLGKPVLVMRDTTERPEAVT 318 (384)
T ss_dssp HHHHHHHHT---TCTTEEEEC----CCCHHHHHHHHHH-CSEEEESS-----STGGGTGGGGTCCEEEESSCCSCHHHHH
T ss_pred HHHHHHHhh---cCCCEEEeC----CCCHHHHHHHHHh-CcEEEECC-----cchHHHHHHcCCCEEEccCCCCcchhhh
Confidence 344444432 236899988 4556799999995 99999999 4458999999999999986 99999998
Q ss_pred cCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHh
Q 003987 706 HGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINV 771 (781)
Q Consensus 706 dg~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll~~ 771 (781)
+| +|+++++ |+++++++|.+++ .||+.+++|++++++.. +.|+|++ +++.++++++.
T Consensus 319 ~g-~g~lv~~-d~~~la~~i~~ll----~d~~~~~~~~~~~~~~~-~~~~~~~--i~~~~~~~~~~ 375 (384)
T 1vgv_A 319 AG-TVRLVGT-DKQRIVEEVTRLL----KDENEYQAMSRAHNPYG-DGQACSR--ILEALKNNRIS 375 (384)
T ss_dssp HT-SEEEECS-SHHHHHHHHHHHH----HCHHHHHHHHSSCCTTC-CSCHHHH--HHHHHHHTCCC
T ss_pred CC-ceEEeCC-CHHHHHHHHHHHH----hChHHHhhhhhccCCCc-CCCHHHH--HHHHHHHHHHh
Confidence 88 9999988 9999999998887 79999999999887765 6777754 44555555543
No 24
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.93 E-value=1.4e-25 Score=217.70 Aligned_cols=160 Identities=14% Similarity=0.195 Sum_probs=142.1
Q ss_pred CCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccC
Q 003987 572 KPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTN 651 (781)
Q Consensus 572 k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~ 651 (781)
+++|+|+||+.+.||++.+++|+.+++ ..++++|+|+|+|+. .+.++++++++++ +|+| |
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~-~~~~~~l~i~G~g~~------------~~~~~~~~~~~~~--~v~~-g---- 61 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK-YKQDIVLLLKGKGPD------------EKKIKLLAQKLGV--KAEF-G---- 61 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT-TGGGEEEEEECCSTT------------HHHHHHHHHHHTC--EEEC-C----
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc-cCCCeEEEEEeCCcc------------HHHHHHHHHHcCC--eEEE-e----
Confidence 568999999999999999999999985 347999999999976 6788899999987 7999 9
Q ss_pred cCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCC-cEEE-cCccccccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 652 RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGL-PTFA-TCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 652 ~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~Gl-PVVa-T~~gG~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
.++.+++..+|+. +|++|+||.+|+||++++|||+||+ |||+ ++.||..+++.++.+ +++++|+++++++|.+++
T Consensus 62 ~~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~i~~l~ 138 (166)
T 3qhp_A 62 FVNSNELLEILKT-CTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LFEPNNAKDLSAKIDWWL 138 (166)
T ss_dssp CCCHHHHHHHHTT-CSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EECTTCHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHh-CCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EEcCCCHHHHHHHHHHHH
Confidence 6678899999995 9999999999999999999999998 9999 568899999987655 889999999999998887
Q ss_pred HhccCCHHHHHHHHHHHHHHHHHhcCcchh
Q 003987 730 GKCKENPSHWKKISDGGLKRIYERLVVSSD 759 (781)
Q Consensus 730 ~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~ 759 (781)
.|++.++++++++++++ ++|||+.+
T Consensus 139 ----~~~~~~~~~~~~~~~~~-~~~s~~~~ 163 (166)
T 3qhp_A 139 ----ENKLERERMQNEYAKSA-LNYTLENS 163 (166)
T ss_dssp ----HCHHHHHHHHHHHHHHH-HHHC----
T ss_pred ----hCHHHHHHHHHHHHHHH-HHCChhhh
Confidence 79999999999999999 89999765
No 25
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.93 E-value=1.1e-24 Score=247.77 Aligned_cols=322 Identities=12% Similarity=0.046 Sum_probs=219.6
Q ss_pred HHHHHHHHHHcC-CCceEEEEcCCCchHHHHHHHHH-cCCcEEEEecCCcccCCCCChhhHhhhhccccchhh--hhHHH
Q 003987 394 EDVGSEITAELQ-GFPDFIIGNYSDGNLVASLLAYK-MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQ--FTADL 469 (781)
Q Consensus 394 ~~~~~~i~~~~~-~kpDIIh~~~~~~~lva~llar~-~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~--~~~e~ 469 (781)
...+..+....+ ..-|+|..|.+...+++..+.++ .+.++.+..|..++. +.+ + +.+.. ...-.
T Consensus 135 ~~fA~~i~~~~~~~~~D~VwVhDYhL~llp~~lR~~~~~~~igfFlHiPfPs----~e~-f-------~~Lp~~~r~ell 202 (496)
T 3t5t_A 135 RDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPS----ADY-W-------RILPKEIRTGIL 202 (496)
T ss_dssp HHHHHHHHHHTTTCSSCEEEEESGGGTTHHHHHHHHCTTSCEEEECCSCCCC----HHH-H-------TTSCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCEEEEeCccHhHHHHHHHhhCCCCeEEEEEcCCCCC----HHH-H-------hhCcHhHHHHHH
Confidence 334444444433 35789999999987777777655 468999999976442 221 1 11110 12234
Q ss_pred HHHhhCCEEEecCHHHHhhccccccccc-cccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhc
Q 003987 470 IAMNNADFIITSTYQEIAGTKNTVGQYE-SHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHG 548 (781)
Q Consensus 470 ~a~~~AD~IIt~S~~~~~~~k~~v~qye-s~~~f~l~~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~ 548 (781)
..|-.+|.|.+.|+..+..+.+...... ....-...+ .....|. ..++.++|+|||.+.|.+.....
T Consensus 203 ~gll~~DligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~-~v~~~gr---~v~v~viP~GID~~~f~~~~~~~-------- 270 (496)
T 3t5t_A 203 HGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAM-TVEWRGH---RTRLRTMPLGYSPLTLDGRNPQL-------- 270 (496)
T ss_dssp HHHTTSSEEEESSHHHHHHHHHHHHHHCTTCEEETTTT-EEEETTE---EEEEEECCCCBCGGGC----CCC--------
T ss_pred HHHHhCCEEEEecHHHHHHHHHHHHHHhcCCcccccCC-eEEECCE---EEEEEEeccEeCHHHhchhhHHH--------
Confidence 5788999999999877654322221110 000000000 0011121 24778999999999987643200
Q ss_pred chhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCC---eEEEEEeCcCCCCCCcchHHHH
Q 003987 549 SIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLREL---VNLVVVAGYIDVNKSKDREEIA 625 (781)
Q Consensus 549 ~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~---v~LvIVG~g~~~~~~~d~ee~~ 625 (781)
....++.+| ++++|+++||+++.||+..+++|| ++.+.+|+ +.|++||.... +..++..+
T Consensus 271 --------~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr---~~~~~y~~ 333 (496)
T 3t5t_A 271 --------PEGIEEWAD-----GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNR---LYVPANAD 333 (496)
T ss_dssp --------CTTHHHHHT-----TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCC---TTSHHHHH
T ss_pred --------HHHHHHHhC-----CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCC---CCchHHHH
Confidence 001122233 578999999999999999999999 88776665 67888885321 12234445
Q ss_pred HHHHHHHHHHHcC----CCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcC---CcEEEcCcc
Q 003987 626 EIEKMHELMKTYK----LDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCG---LPTFATCHG 698 (781)
Q Consensus 626 ~~~~l~~li~elg----L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~G---lPVVaT~~g 698 (781)
..+++.+++.+.+ .. .|+|+| .++.+++..+|+ +||+||+||.+||||++++|||||| .|+|+|..+
T Consensus 334 l~~~l~~lv~~in~~~g~~-~V~f~g----~v~~~el~aly~-~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~a 407 (496)
T 3t5t_A 334 YVHRVETAVAEANAELGSD-TVRIDN----DNDVNHTIACFR-RADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETC 407 (496)
T ss_dssp HHHHHHHHHHHHHHHHCTT-SEEEEE----CCCHHHHHHHHH-HCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTB
T ss_pred HHHHHHHHHHHhccccCCc-CEEEeC----CCCHHHHHHHHH-hccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCC
Confidence 5666777776553 22 699999 577899999999 5999999999999999999999997 899999999
Q ss_pred ccccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHH
Q 003987 699 GPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVIN 770 (781)
Q Consensus 699 G~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll~ 770 (781)
|..+.+ +.+|++++|+|++++|++|.++++ .+++.++++.+++++++ .++++ ..+++.|.+-+.
T Consensus 408 Ga~~~l--~~~allVnP~D~~~lA~AI~~aL~---m~~~er~~r~~~~~~~V-~~~d~--~~W~~~fl~~L~ 471 (496)
T 3t5t_A 408 GAAEVL--GEYCRSVNPFDLVEQAEAISAALA---AGPRQRAEAAARRRDAA-RPWTL--EAWVQAQLDGLA 471 (496)
T ss_dssp TTHHHH--GGGSEEECTTBHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHH-TTCBH--HHHHHHHHHHHH
T ss_pred CCHHHh--CCCEEEECCCCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHH-HHCCH--HHHHHHHHHHHh
Confidence 999988 347999999999999999998884 56788999999999998 56665 445555555553
No 26
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.91 E-value=3e-24 Score=235.37 Aligned_cols=279 Identities=12% Similarity=0.102 Sum_probs=185.2
Q ss_pred HHHHHHHHHcCCCceEEEEcCCCc-hHHHHHHHHHcCCcEEEEecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHh
Q 003987 395 DVGSEITAELQGFPDFIIGNYSDG-NLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMN 473 (781)
Q Consensus 395 ~~~~~i~~~~~~kpDIIh~~~~~~-~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~ 473 (781)
.+.+.+.+ .+||+||+|.... ++.+.++++..|+|++++.|+... +. .+.. +. .........+
T Consensus 82 ~l~~~l~~---~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~--~~----~~~~------~~-~~~~~~~~~~ 145 (376)
T 1v4v_A 82 QAARALKE---MGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRS--GN----LKEP------FP-EEANRRLTDV 145 (376)
T ss_dssp HHHHHHHH---TTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCC--SC----TTSS------TT-HHHHHHHHHH
T ss_pred HHHHHHHH---cCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEeCCCcc--cc----ccCC------Cc-hHHHHHHHHH
Confidence 34444443 3899999987644 556677888999998754443311 00 0000 00 0011224456
Q ss_pred hCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCC-cCCCCCCCcHHHHHHhhhhcchhh
Q 003987 474 NADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA-DMDIYFPYSEKQKRLTALHGSIEQ 552 (781)
Q Consensus 474 ~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnGv-D~~~f~p~~~~~~r~~~~~~~i~~ 552 (781)
.+|.++++|....+.+.+ .|++ ..|+.+++|++ |...+ ...+
T Consensus 146 ~~~~~~~~s~~~~~~l~~--------------------~g~~--~~ki~vi~n~~~d~~~~-----~~~~---------- 188 (376)
T 1v4v_A 146 LTDLDFAPTPLAKANLLK--------------------EGKR--EEGILVTGQTGVDAVLL-----AAKL---------- 188 (376)
T ss_dssp HCSEEEESSHHHHHHHHT--------------------TTCC--GGGEEECCCHHHHHHHH-----HHHH----------
T ss_pred HhceeeCCCHHHHHHHHH--------------------cCCC--cceEEEECCchHHHHhh-----hhhh----------
Confidence 799999999876542111 1443 56899999864 42111 0000
Q ss_pred hccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEE-eCcCCCCCCcchHHHHHHHHHH
Q 003987 553 LLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVV-AGYIDVNKSKDREEIAEIEKMH 631 (781)
Q Consensus 553 ~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIV-G~g~~~~~~~d~ee~~~~~~l~ 631 (781)
...++.+ ++++++++++||+...||++.+++|++++.+..++++++++ |+++. ..+.++
T Consensus 189 -----~~~~~~~----~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~~-----------~~~~l~ 248 (376)
T 1v4v_A 189 -----GRLPEGL----PEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPV-----------VREAVF 248 (376)
T ss_dssp -----CCCCTTC----CSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCHH-----------HHHHHH
T ss_pred -----hHHHHhc----CCCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCHH-----------HHHHHH
Confidence 0011111 23445677899998888999999999999877788998886 64431 234555
Q ss_pred HHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc-CccccccccccCCeE
Q 003987 632 ELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT-CHGGPAEIIEHGASG 710 (781)
Q Consensus 632 ~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT-~~gG~~EiI~dg~~G 710 (781)
+++. ..++|+|+| .+...++..+|+. +|++|.|| | |+ ++|||+||+|||++ +.||..+++.++ +|
T Consensus 249 ~~~~---~~~~v~~~g----~~g~~~~~~~~~~-ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g 314 (376)
T 1v4v_A 249 PVLK---GVRNFVLLD----PLEYGSMAALMRA-SLLLVTDS--G--GL-QEEGAALGVPVVVLRNVTERPEGLKAG-IL 314 (376)
T ss_dssp HHHT---TCTTEEEEC----CCCHHHHHHHHHT-EEEEEESC--H--HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SE
T ss_pred HHhc---cCCCEEEEC----CCCHHHHHHHHHh-CcEEEECC--c--CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ce
Confidence 5543 246899997 4445688999995 99999999 3 44 88999999999998 578999987655 89
Q ss_pred EEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchh--hhccchHHHHH
Q 003987 711 FHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSD--GIVDPSPFVIN 770 (781)
Q Consensus 711 ~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~--~il~~ye~ll~ 770 (781)
++++ .|+++++++|.+++ .|++.+++|++++ +.|.|... .+++.+++++.
T Consensus 315 ~lv~-~d~~~la~~i~~ll----~d~~~~~~~~~~~-----~~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 315 KLAG-TDPEGVYRVVKGLL----ENPEELSRMRKAK-----NPYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp EECC-SCHHHHHHHHHHHH----TCHHHHHHHHHSC-----CSSCCSCHHHHHHHHHHHHTT
T ss_pred EECC-CCHHHHHHHHHHHH----hChHhhhhhcccC-----CCCCCChHHHHHHHHHHHHhc
Confidence 9996 49999999998887 8999999998643 56766433 55566666553
No 27
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.90 E-value=1.5e-23 Score=232.07 Aligned_cols=206 Identities=11% Similarity=0.120 Sum_probs=159.2
Q ss_pred HHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcc
Q 003987 470 IAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGS 549 (781)
Q Consensus 470 ~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~ 549 (781)
..++.+|.|++.|....+.+.+ .|+ . ++.+++|+. |.+.... +
T Consensus 149 ~~~~~~d~ii~~S~~~~~~l~~--------------------~g~---~-ki~vi~n~~----f~~~~~~--~------- 191 (374)
T 2xci_A 149 ILSKKFDLIIMRTQEDVEKFKT--------------------FGA---K-RVFSCGNLK----FICQKGK--G------- 191 (374)
T ss_dssp HHHTTCSEEEESCHHHHHHHHT--------------------TTC---C-SEEECCCGG----GCCCCCS--C-------
T ss_pred HHHHhCCEEEECCHHHHHHHHH--------------------cCC---C-eEEEcCCCc----cCCCcCh--h-------
Confidence 4678999999999887652211 133 2 899999973 2121100 0
Q ss_pred hhhhccCccccccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHH
Q 003987 550 IEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEK 629 (781)
Q Consensus 550 i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~ 629 (781)
.. + .++++++.|+ ..||++.+++|++++.+..|+++|+|+|+|+. ..++
T Consensus 192 ------------~~--l----~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~-----------~~~~ 240 (374)
T 2xci_A 192 ------------IK--L----KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHIE-----------NAKI 240 (374)
T ss_dssp ------------CC--C----SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGG-----------GHHH
T ss_pred ------------hh--h----cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCHH-----------HHHH
Confidence 00 1 1266776665 46899999999999988889999999999875 1257
Q ss_pred HHHHHHHcCCC--------CcEEEeccccCcCChHHHHHHHHccCcEEEEcCC-CCCCcHHHHHHHHcCCcEEEc-Cccc
Q 003987 630 MHELMKTYKLD--------GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF-YEAFGLTVVEAMTCGLPTFAT-CHGG 699 (781)
Q Consensus 630 l~~li~elgL~--------~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~-~E~fGltvlEAMa~GlPVVaT-~~gG 699 (781)
++++++++++. ++|.+.|.+ +++..+|+. +|++++||. .|++|++++||||||+|||++ +.+|
T Consensus 241 l~~~~~~~gl~~~~~~~~~~~v~~~~~~------~dl~~~y~~-aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~ 313 (374)
T 2xci_A 241 FEKKARDFGFKTSFFENLEGDVILVDRF------GILKELYPV-GKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHK 313 (374)
T ss_dssp HHHHHHHTTCCEEETTCCCSSEEECCSS------SCHHHHGGG-EEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTT
T ss_pred HHHHHHHCCCceEEecCCCCcEEEECCH------HHHHHHHHh-CCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccC
Confidence 88889999886 468887732 468889995 999888765 577899999999999999985 7899
Q ss_pred cccccccC-CeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcC
Q 003987 700 PAEIIEHG-ASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLV 755 (781)
Q Consensus 700 ~~EiI~dg-~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ys 755 (781)
..|++.+. .+|++++++|+++++++|.+++ +| +.+++|+++|++++.+++.
T Consensus 314 ~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll----~d-~~r~~mg~~ar~~~~~~~g 365 (374)
T 2xci_A 314 VNDLKEFLEKEGAGFEVKNETELVTKLTELL----SV-KKEIKVEEKSREIKGCYLE 365 (374)
T ss_dssp SHHHHHHHHHTTCEEECCSHHHHHHHHHHHH----HS-CCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCEEEeCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHhccc
Confidence 99988763 5788898999999999999888 68 8999999999999977653
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.90 E-value=1.6e-23 Score=206.79 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=134.2
Q ss_pred CCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHH--HcCCCCcEEEe
Q 003987 569 DRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK--TYKLDGQFRWI 646 (781)
Q Consensus 569 ~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~--elgL~~~V~fl 646 (781)
+.++++|+|+||+.+.||++.+++++.++ ++++|+|+|+++. .+.++++++ ++++.++|+|+
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~------------~~~l~~~~~~~~~~l~~~v~~~ 83 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSK------------GDHAERYARKIMKIAPDNVKFL 83 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCT------------TSTHHHHHHHHHHHSCTTEEEE
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCcc------------HHHHHHHHHhhhcccCCcEEEe
Confidence 56788999999999999999999999987 5799999999876 346777788 78889999999
Q ss_pred ccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEEECCCCHHHHHHHHH
Q 003987 647 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMA 726 (781)
Q Consensus 647 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~G~lv~p~d~~~lA~~I~ 726 (781)
| .++.+++..+++. +|++|+||..|+||++++|||+||+|||+|+.|+..|++.++.+|+++ +.|+++++++|.
T Consensus 84 g----~~~~~e~~~~~~~-adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~ 157 (177)
T 2f9f_A 84 G----SVSEEELIDLYSR-CKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NADVNEIIDAMK 157 (177)
T ss_dssp E----SCCHHHHHHHHHH-CSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSCHHHHHHHHH
T ss_pred C----CCCHHHHHHHHHh-CCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCCHHHHHHHHH
Confidence 9 6778899999995 999999999999999999999999999999999999999999999999 999999999998
Q ss_pred HHHHhccCCHHH-HHHHHHH
Q 003987 727 DFFGKCKENPSH-WKKISDG 745 (781)
Q Consensus 727 ~~l~~l~~dp~~-~~~~s~~ 745 (781)
+++ .|++. +++++++
T Consensus 158 ~l~----~~~~~~~~~~~~~ 173 (177)
T 2f9f_A 158 KVS----KNPDKFKKDCFRR 173 (177)
T ss_dssp HHH----HCTTTTHHHHHHH
T ss_pred HHH----hCHHHHHHHHHHH
Confidence 887 67664 4444433
No 29
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.81 E-value=2.9e-19 Score=195.31 Aligned_cols=251 Identities=11% Similarity=0.028 Sum_probs=175.6
Q ss_pred CCCceEEEEcCCCc---hHHHHHHHH--HcCCcEEEEecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEE
Q 003987 405 QGFPDFIIGNYSDG---NLVASLLAY--KMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFII 479 (781)
Q Consensus 405 ~~kpDIIh~~~~~~---~lva~llar--~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~II 479 (781)
-.++|+|+.+++.. .+.+.++.+ +.++|+++.+|++++.... ...+ .. ..|...++.||.||
T Consensus 72 ~~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~---------~~~~--~~--~~E~~~y~~aD~Ii 138 (339)
T 3rhz_A 72 LRHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFS---------GNFY--LM--DRTIAYYNKADVVV 138 (339)
T ss_dssp CCTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCG---------GGGG--GH--HHHHHHHTTCSEEE
T ss_pred CCCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCc---------cchh--hH--HHHHHHHHHCCEEE
Confidence 35899999988764 233445555 3489999999999764432 1111 11 24778999999999
Q ss_pred ecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccc
Q 003987 480 TSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQ 559 (781)
Q Consensus 480 t~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~ 559 (781)
+.|+...+.+. .+|++ ..++.++++. |... +.+
T Consensus 139 ~~S~~~~~~l~--------------------~~G~~--~~ki~~~~~~-~~~~--~~~---------------------- 171 (339)
T 3rhz_A 139 APSQKMIDKLR--------------------DFGMN--VSKTVVQGMW-DHPT--QAP---------------------- 171 (339)
T ss_dssp ESCHHHHHHHH--------------------HTTCC--CSEEEECCSC-CCCC--CCC----------------------
T ss_pred ECCHHHHHHHH--------------------HcCCC--cCceeecCCC-CccC--ccc----------------------
Confidence 99998765321 12443 3566444332 2110 100
Q ss_pred cccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCC
Q 003987 560 NDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL 639 (781)
Q Consensus 560 ~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL 639 (781)
... +.++++|+|+|+++....+. ...++++|+|+|+|+. . .+
T Consensus 172 ----~~~--~~~~~~i~yaG~l~k~~~L~----------~l~~~~~f~ivG~G~~------------~----------~l 213 (339)
T 3rhz_A 172 ----MFP--AGLKREIHFPGNPERFSFVK----------EWKYDIPLKVYTWQNV------------E----------LP 213 (339)
T ss_dssp ----CCC--CEEEEEEEECSCTTTCGGGG----------GCCCSSCEEEEESCCC------------C----------CC
T ss_pred ----ccc--cCCCcEEEEeCCcchhhHHH----------hCCCCCeEEEEeCCcc------------c----------Cc
Confidence 001 23567899999999643322 2247899999999976 1 24
Q ss_pred CCcEEEeccccCcCChHHHHHHHHccCcEEEEcCC-------CCCCcHHHHHHHHcCCcEEEcCccccccccccCCeEEE
Q 003987 640 DGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF-------YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFH 712 (781)
Q Consensus 640 ~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~-------~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~G~l 712 (781)
+ +|+|+| .++.+++..+++. +|+.+.+.. ...+|.+++||||||+|||+++.|+..++|.++.+|+.
T Consensus 214 ~-nV~f~G----~~~~~el~~~l~~-~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~ 287 (339)
T 3rhz_A 214 Q-NVHKIN----YRPDEQLLMEMSQ-GGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLGWI 287 (339)
T ss_dssp T-TEEEEE----CCCHHHHHHHHHT-EEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEE
T ss_pred C-CEEEeC----CCCHHHHHHHHHh-CCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEE
Confidence 4 899999 7888999999985 677666511 13569999999999999999999999999999999999
Q ss_pred ECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchh---hhccchHHH
Q 003987 713 IDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSD---GIVDPSPFV 768 (781)
Q Consensus 713 v~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~---~il~~ye~l 768 (781)
++ +.++++++|..+ +++.+++|++++++.+ ++++|... ++.+.+.++
T Consensus 288 ~~--~~~e~~~~i~~l------~~~~~~~m~~na~~~a-~~~~~~~f~k~~l~~~~~~~ 337 (339)
T 3rhz_A 288 VK--DVEEAIMKVKNV------NEDEYIELVKNVRSFN-PILRKGFFTRRLLTESVFQA 337 (339)
T ss_dssp ES--SHHHHHHHHHHC------CHHHHHHHHHHHHHHT-HHHHTTHHHHHHHHHHHHHH
T ss_pred eC--CHHHHHHHHHHh------CHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHh
Confidence 97 688888888642 4678999999999886 66887665 444444444
No 30
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.81 E-value=1.6e-18 Score=191.93 Aligned_cols=162 Identities=12% Similarity=0.075 Sum_probs=123.6
Q ss_pred CCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccc
Q 003987 570 RSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQ 649 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~ 649 (781)
+.+.++++.|++. .|+...+.+++..+.+. ++++++++++.... +.+. ++.++|++.|+.
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~--~~~~~~~~g~~~~~-----------~~l~------~~~~~v~~~~~~ 300 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAGL--DADVLVASGPSLDV-----------SGLG------EVPANVRLESWV 300 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHTS--SSEEEEECCSSCCC-----------TTCC------CCCTTEEEESCC
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHcC--CCEEEEEECCCCCh-----------hhhc------cCCCcEEEeCCC
Confidence 3445678889986 77888888887777653 57777776654310 0111 356789999954
Q ss_pred cCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCCeEEEECCC--CHHHHHH
Q 003987 650 TNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIEHGASGFHIDPY--HPDQAAE 723 (781)
Q Consensus 650 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~g----G~~EiI~dg~~G~lv~p~--d~~~lA~ 723 (781)
+ +..+++ .+|++|.++- +.+++|||+||+|+|++..+ +..+.+.++++|++++++ |++++++
T Consensus 301 ----~---~~~~l~-~ad~~v~~~g----~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ 368 (412)
T 3otg_A 301 ----P---QAALLP-HVDLVVHHGG----SGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSG 368 (412)
T ss_dssp ----C---HHHHGG-GCSEEEESCC----HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHH
T ss_pred ----C---HHHHHh-cCcEEEECCc----hHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHH
Confidence 2 566777 5999998762 48999999999999996544 478888888999999987 8999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHH
Q 003987 724 LMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVIN 770 (781)
Q Consensus 724 ~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll~ 770 (781)
+|.+++ .|++.+++|++.+++.. +.++| ..+++.+++++.
T Consensus 369 ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~~ 408 (412)
T 3otg_A 369 AAKRLL----AEESYRAGARAVAAEIA-AMPGP--DEVVRLLPGFAS 408 (412)
T ss_dssp HHHHHH----HCHHHHHHHHHHHHHHH-HSCCH--HHHHTTHHHHHC
T ss_pred HHHHHH----hCHHHHHHHHHHHHHHh-cCCCH--HHHHHHHHHHhc
Confidence 998888 79999999999988877 66777 457788888763
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.77 E-value=1.1e-16 Score=176.46 Aligned_cols=346 Identities=15% Similarity=0.075 Sum_probs=202.1
Q ss_pred CceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCCCCCCCccCcceeee
Q 003987 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV 356 (781)
Q Consensus 277 ~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p~~~~~~~~~~~e~v 356 (781)
|..||+|.+ | -|||-.. .+| .|+++|.++||+|. ++|....- . .+.+
T Consensus 1 M~~~i~i~~--G-----------GTgGHi~------pal--ala~~L~~~g~~V~----~vg~~~g~----e----~~~v 47 (365)
T 3s2u_A 1 MKGNVLIMA--G-----------GTGGHVF------PAL--ACAREFQARGYAVH----WLGTPRGI----E----NDLV 47 (365)
T ss_dssp --CEEEEEC--C-----------SSHHHHH------HHH--HHHHHHHHTTCEEE----EEECSSST----H----HHHT
T ss_pred CCCcEEEEc--C-----------CCHHHHH------HHH--HHHHHHHhCCCEEE----EEECCchH----h----hchh
Confidence 566888764 1 2677433 333 68888999999998 88754210 0 0001
Q ss_pred cCCCCeEEEEeccCCCcc-cccccccccCchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcEEE
Q 003987 357 SGTEHTHILRVPFRSEKG-ILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCT 435 (781)
Q Consensus 357 ~~~~~~~I~rvp~~~~~~-~~~~~isr~~i~~yl~~f~~~~~~~i~~~~~~kpDIIh~~~~~~~lva~llar~~gvp~v~ 435 (781)
+ ..+..+..+|.....+ ...+++. ..+..+.. ...+.+.+++. +||+|++.....+..+.++++.+|+|+++
T Consensus 48 ~-~~g~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~l~~~---~PDvVi~~g~~~s~p~~laA~~~~iP~vi 120 (365)
T 3s2u_A 48 P-KAGLPLHLIQVSGLRGKGLKSLVK--APLELLKS-LFQALRVIRQL---RPVCVLGLGGYVTGPGGLAARLNGVPLVI 120 (365)
T ss_dssp G-GGTCCEEECC----------------CHHHHHHH-HHHHHHHHHHH---CCSEEEECSSSTHHHHHHHHHHTTCCEEE
T ss_pred h-hcCCcEEEEECCCcCCCCHHHHHH--HHHHHHHH-HHHHHHHHHhc---CCCEEEEcCCcchHHHHHHHHHcCCCEEE
Confidence 1 1234555555433211 0001110 11222222 22344455554 99999999888888888899999999885
Q ss_pred EecCCcccCCCCChhhHhhhhccccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCC
Q 003987 436 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 515 (781)
Q Consensus 436 t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~ 515 (781)
.-.+..+ . .+.++..+.++.|.+..+.. +
T Consensus 121 he~n~~~------G----------------~~nr~l~~~a~~v~~~~~~~----------~------------------- 149 (365)
T 3s2u_A 121 HEQNAVA------G----------------TANRSLAPIARRVCEAFPDT----------F------------------- 149 (365)
T ss_dssp EECSSSC------C----------------HHHHHHGGGCSEEEESSTTS----------S-------------------
T ss_pred Eecchhh------h----------------hHHHhhccccceeeeccccc----------c-------------------
Confidence 3222111 0 01223455678776654321 0
Q ss_pred CCCCceEEecCCCcCCCCCCCcHHHHHHhhhhcchhhhccCccccccccCCCCCCCCCE-EEEEeeccCCCChHHHHHHH
Q 003987 516 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPI-VFSMARLDHVKNMTGLVECY 594 (781)
Q Consensus 516 ~f~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~i~~~l~~~~~~~~~~g~l~~~~k~i-Il~vGRL~~~Kgl~~LieA~ 594 (781)
....|..++.|.+..+.+.... ...++ +++++. +++.|+++..+..+.+.+++
T Consensus 150 ~~~~k~~~~g~pvr~~~~~~~~------------------------~~~~~--~~~~~~ilv~gGs~g~~~~~~~~~~al 203 (365)
T 3s2u_A 150 PASDKRLTTGNPVRGELFLDAH------------------------ARAPL--TGRRVNLLVLGGSLGAEPLNKLLPEAL 203 (365)
T ss_dssp CC---CEECCCCCCGGGCCCTT------------------------SSCCC--TTSCCEEEECCTTTTCSHHHHHHHHHH
T ss_pred cCcCcEEEECCCCchhhccchh------------------------hhccc--CCCCcEEEEECCcCCccccchhhHHHH
Confidence 0134666777777665443221 12333 344555 55557888888888888999
Q ss_pred HHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCC
Q 003987 595 GKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF 674 (781)
Q Consensus 595 ~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~ 674 (781)
+.+... .++.++++++..+ .+.+.+..++.+ .++++.++.+ ++..+|+ .+|++|.-+
T Consensus 204 ~~l~~~-~~~~vi~~~G~~~------------~~~~~~~~~~~~--~~~~v~~f~~------dm~~~l~-~aDlvI~ra- 260 (365)
T 3s2u_A 204 AQVPLE-IRPAIRHQAGRQH------------AEITAERYRTVA--VEADVAPFIS------DMAAAYA-WADLVICRA- 260 (365)
T ss_dssp HTSCTT-TCCEEEEECCTTT------------HHHHHHHHHHTT--CCCEEESCCS------CHHHHHH-HCSEEEECC-
T ss_pred Hhcccc-cceEEEEecCccc------------cccccceecccc--cccccccchh------hhhhhhc-cceEEEecC-
Confidence 887643 3455555544333 345555556655 4577888654 3677888 499999764
Q ss_pred CCCCcHHHHHHHHcCCcEEEcCcccc--------ccccccCCeEEEECCC--CHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 003987 675 YEAFGLTVVEAMTCGLPTFATCHGGP--------AEIIEHGASGFHIDPY--HPDQAAELMADFFGKCKENPSHWKKISD 744 (781)
Q Consensus 675 ~E~fGltvlEAMa~GlPVVaT~~gG~--------~EiI~dg~~G~lv~p~--d~~~lA~~I~~~l~~l~~dp~~~~~~s~ 744 (781)
-+.|+.|+|++|+|+|....++. ++.+.+.+.|++++.. +++.++++|.+++ .||+.+++|++
T Consensus 261 ---G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll----~d~~~~~~m~~ 333 (365)
T 3s2u_A 261 ---GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVL----MHPETLRSMAD 333 (365)
T ss_dssp ---CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHH----HCTHHHHHHHH
T ss_pred ---CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHH----CCHHHHHHHHH
Confidence 37899999999999998765432 3455666689998755 5889999998888 89999999999
Q ss_pred HHHHHHHHhcCcchhhhccchHHHHHhc
Q 003987 745 GGLKRIYERLVVSSDGIVDPSPFVINVI 772 (781)
Q Consensus 745 ~a~~~~~~~ysw~~~~il~~ye~ll~~~ 772 (781)
++++.... . ....+++..+++...+
T Consensus 334 ~a~~~~~~-~--aa~~ia~~i~~larG~ 358 (365)
T 3s2u_A 334 QARSLAKP-E--ATRTVVDACLEVARGL 358 (365)
T ss_dssp HHHHTCCT-T--HHHHHHHHHHHHC---
T ss_pred HHHhcCCc-c--HHHHHHHHHHHHHccc
Confidence 99876421 1 1235666666665443
No 32
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.76 E-value=4.4e-17 Score=181.90 Aligned_cols=161 Identities=12% Similarity=0.053 Sum_probs=112.4
Q ss_pred CCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEE-EEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 003987 570 RSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNL-VVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 648 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~L-vIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~ 648 (781)
+++.+++++|++. .++...+.+++..+.+. +++++ +++|+++. .+.+ + .+.++|++.|+
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~G~~~~------------~~~l----~--~~~~~v~~~~~ 290 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRAFGNL-PGWHLVLQIGRKVT------------PAEL----G--ELPDNVEVHDW 290 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHHHTTC-TTEEEEEECC---C------------GGGG----C--SCCTTEEEESS
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHHHhcC-CCeEEEEEeCCCCC------------hHHh----c--cCCCCeEEEec
Confidence 3456788999998 55655555555545432 46787 56787754 1111 1 24678999995
Q ss_pred ccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCCeEEEECCC--CHHHHH
Q 003987 649 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--HPDQAA 722 (781)
Q Consensus 649 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG----~~EiI~dg~~G~lv~p~--d~~~lA 722 (781)
.+ .. .+++ .+|++|..+- +.+++|||++|+|+|++..++ ..+.+.+.+.|+.++++ |+++++
T Consensus 291 ~~----~~---~~l~-~ad~~v~~~G----~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~ 358 (430)
T 2iyf_A 291 VP----QL---AILR-QADLFVTHAG----AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLR 358 (430)
T ss_dssp CC----HH---HHHT-TCSEEEECCC----HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHH
T ss_pred CC----HH---HHhh-ccCEEEECCC----ccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHH
Confidence 43 33 5666 5999999752 379999999999999997655 46667777899999887 889999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHH
Q 003987 723 ELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVI 769 (781)
Q Consensus 723 ~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll 769 (781)
++|.+++ .|++.++++++.+++.. +.++|+. +++.+++++
T Consensus 359 ~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~i~~~~ 398 (430)
T 2iyf_A 359 ETALALV----DDPEVARRLRRIQAEMA-QEGGTRR--AADLIEAEL 398 (430)
T ss_dssp HHHHHHH----HCHHHHHHHHHHHHHHH-HHCHHHH--HHHHHHTTS
T ss_pred HHHHHHH----cCHHHHHHHHHHHHHHH-hcCcHHH--HHHHHHHHh
Confidence 9998887 79999999999888766 4566643 444444444
No 33
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.73 E-value=1.1e-17 Score=184.31 Aligned_cols=161 Identities=11% Similarity=0.010 Sum_probs=119.9
Q ss_pred CCCEEEEEeeccCCCCh-HHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccc
Q 003987 571 SKPIVFSMARLDHVKNM-TGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQ 649 (781)
Q Consensus 571 ~k~iIl~vGRL~~~Kgl-~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~ 649 (781)
.+.+++++|++...|+. ..+++++.+. +..|+++++++|++.. .+.+. ++.++|++.|+
T Consensus 218 ~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~------------~~~l~------~~~~~v~~~~~- 277 (391)
T 3tsa_A 218 ARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEH------------RALLT------DLPDNARIAES- 277 (391)
T ss_dssp SEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGG------------GGGCT------TCCTTEEECCS-
T ss_pred CCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcc------------hhhcc------cCCCCEEEecc-
Confidence 34567778999775555 7777777777 6667899999998854 11111 35678999995
Q ss_pred cCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEE----cCccccccccccCCeEEEECC----CCHHHH
Q 003987 650 TNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFA----TCHGGPAEIIEHGASGFHIDP----YHPDQA 721 (781)
Q Consensus 650 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVa----T~~gG~~EiI~dg~~G~lv~p----~d~~~l 721 (781)
++..+++ + ++|++|.. +.+.+++|||++|+|+|+ ++..+..+.+.+.+.|..+++ .|++++
T Consensus 278 ---~~~~~ll---~-~ad~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l 346 (391)
T 3tsa_A 278 ---VPLNLFL---R-TCELVICA----GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQF 346 (391)
T ss_dssp ---CCGGGTG---G-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHH
T ss_pred ---CCHHHHH---h-hCCEEEeC----CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHH
Confidence 4444444 5 69999975 345799999999999999 455667788888899999998 789999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHH
Q 003987 722 AELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVI 769 (781)
Q Consensus 722 A~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll 769 (781)
+++|.+++ .||+.++++++.+.+.. +..+|+ .+++..++++
T Consensus 347 ~~ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~i~~~~ 387 (391)
T 3tsa_A 347 TDSIATVL----GDTGFAAAAIKLSDEIT-AMPHPA--ALVRTLENTA 387 (391)
T ss_dssp HHHHHHHH----TCTHHHHHHHHHHHHHH-TSCCHH--HHHHHHHHC-
T ss_pred HHHHHHHH----cCHHHHHHHHHHHHHHH-cCCCHH--HHHHHHHHHH
Confidence 99998887 89999999998877665 556663 3445555443
No 34
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.73 E-value=4.6e-17 Score=181.47 Aligned_cols=276 Identities=13% Similarity=0.137 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHHcCCCceEEEEcCCCc-hHHHHHHHHHcCCcEEEEecCCcccCCCCChhhHhhhhccccchhhhhH
Q 003987 389 LETFTEDVGSEITAELQGFPDFIIGNYSDG-NLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTA 467 (781)
Q Consensus 389 l~~f~~~~~~~i~~~~~~kpDIIh~~~~~~-~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~ 467 (781)
.......+.+.+.+. +||+||++.... .+.+.+++++.|+|++...+++ .. + +.+....+. ..
T Consensus 96 ~~~~~~~l~~~l~~~---kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~-rs-~---~~~~~~~~~--------~~ 159 (396)
T 3dzc_A 96 TSKILLGMQQVLSSE---QPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGL-RT-G---NIYSPWPEE--------GN 159 (396)
T ss_dssp HHHHHHHHHHHHHHH---CCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCC-CC-S---CTTSSTTHH--------HH
T ss_pred HHHHHHHHHHHHHhc---CCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCc-cc-c---ccccCCcHH--------HH
Confidence 334444555566655 999999988665 4666788999999976543322 11 1 000000000 01
Q ss_pred HHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCC-CcCCCCCCCcHHH-HHHhh
Q 003987 468 DLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG-ADMDIYFPYSEKQ-KRLTA 545 (781)
Q Consensus 468 e~~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnG-vD~~~f~p~~~~~-~r~~~ 545 (781)
.....+.+|.+++.|+...+.+. ..|++ ..++.++.|. +|...+.+..... ...
T Consensus 160 r~~~~~~a~~~~~~se~~~~~l~--------------------~~G~~--~~ki~vvGn~~~d~~~~~~~~~~~~~~~-- 215 (396)
T 3dzc_A 160 RKLTAALTQYHFAPTDTSRANLL--------------------QENYN--AENIFVTGNTVIDALLAVREKIHTDMDL-- 215 (396)
T ss_dssp HHHHHHTCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHHHHHHHCHHH--
T ss_pred HHHHHHhcCEEECCCHHHHHHHH--------------------HcCCC--cCcEEEECCcHHHHHHHhhhhcccchhh--
Confidence 11234678999999987654211 12443 6689999874 4432211100000 000
Q ss_pred hhcchhhhccCccccccccCCCCCCCCCE-EEEEeecc-CCCChHHHHHHHHHhhccCCCeEEEEE-eCcCCCCCCcchH
Q 003987 546 LHGSIEQLLFDPEQNDEHVGTLSDRSKPI-VFSMARLD-HVKNMTGLVECYGKNSQLRELVNLVVV-AGYIDVNKSKDRE 622 (781)
Q Consensus 546 ~~~~i~~~l~~~~~~~~~~g~l~~~~k~i-Il~vGRL~-~~Kgl~~LieA~~~l~~~~~~v~LvIV-G~g~~~~~~~d~e 622 (781)
....++++|++ ++++++ +++.+|.. ..|++..+++|+.++.+.+|++++++. |.++.
T Consensus 216 -----------~~~~r~~lg~l-~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~~-------- 275 (396)
T 3dzc_A 216 -----------QATLESQFPML-DASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNPN-------- 275 (396)
T ss_dssp -----------HHHHHHTCTTC-CTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCHH--------
T ss_pred -----------HHHHHHHhCcc-CCCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCChH--------
Confidence 00112446632 334455 44555654 358899999999999887789999886 43321
Q ss_pred HHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc-Cccccc
Q 003987 623 EIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT-CHGGPA 701 (781)
Q Consensus 623 e~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT-~~gG~~ 701 (781)
..+.++++ ++..++|++++ .+...++..+|+. +|++|.+| | |++ +|||+||+|||++ +.++..
T Consensus 276 ---~~~~l~~~---~~~~~~v~~~~----~lg~~~~~~l~~~-ad~vv~~S---G-g~~-~EA~a~G~PvV~~~~~~~~~ 339 (396)
T 3dzc_A 276 ---VREPVNKL---LKGVSNIVLIE----PQQYLPFVYLMDR-AHIILTDS---G-GIQ-EEAPSLGKPVLVMRETTERP 339 (396)
T ss_dssp ---HHHHHHHH---TTTCTTEEEEC----CCCHHHHHHHHHH-CSEEEESC---S-GGG-TTGGGGTCCEEECCSSCSCH
T ss_pred ---HHHHHHHH---HcCCCCEEEeC----CCCHHHHHHHHHh-cCEEEECC---c-cHH-HHHHHcCCCEEEccCCCcch
Confidence 12233322 34557899988 5566788899995 99999998 3 444 8999999999999 788888
Q ss_pred cccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003987 702 EIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGG 746 (781)
Q Consensus 702 EiI~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a 746 (781)
|++++| +++++++ |+++++++|.+++ .|++.+++|++++
T Consensus 340 e~v~~G-~~~lv~~-d~~~l~~ai~~ll----~d~~~~~~m~~~~ 378 (396)
T 3dzc_A 340 EAVAAG-TVKLVGT-NQQQICDALSLLL----TDPQAYQAMSQAH 378 (396)
T ss_dssp HHHHHT-SEEECTT-CHHHHHHHHHHHH----HCHHHHHHHHTSC
T ss_pred HHHHcC-ceEEcCC-CHHHHHHHHHHHH----cCHHHHHHHhhcc
Confidence 998887 5787765 8999999998887 7999999998765
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.72 E-value=1.1e-17 Score=185.11 Aligned_cols=149 Identities=9% Similarity=0.002 Sum_probs=99.4
Q ss_pred CCCCEEEEEeeccCCC----------ChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCC
Q 003987 570 RSKPIVFSMARLDHVK----------NMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL 639 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~K----------gl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL 639 (781)
..+++++++|++...| .+..++++++++ ++++++++++.. .+.+. .+
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~------------~~~l~------~~ 282 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-----GFEVVVAVSDKL------------AQTLQ------PL 282 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGGG-----TCEEEECCCC--------------------------C
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-----CCEEEEEeCCcc------------hhhhc------cC
Confidence 3456788899997555 455666665543 588999888754 12222 35
Q ss_pred CCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEE----cCccccccccccCCeEEEECC
Q 003987 640 DGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFA----TCHGGPAEIIEHGASGFHIDP 715 (781)
Q Consensus 640 ~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVa----T~~gG~~EiI~dg~~G~lv~p 715 (781)
.++|++.|+ ++. ..+++ .+|++|.. +.+.+++|||+||+|+|+ ++..+.++.+++.+.|+++++
T Consensus 283 ~~~v~~~~~----~~~---~~ll~-~ad~~v~~----gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~ 350 (398)
T 4fzr_A 283 PEGVLAAGQ----FPL---SAIMP-ACDVVVHH----GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPW 350 (398)
T ss_dssp CTTEEEESC----CCH---HHHGG-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-
T ss_pred CCcEEEeCc----CCH---HHHHh-hCCEEEec----CCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCc
Confidence 689999994 443 45555 59999965 447899999999999999 555678888889999999988
Q ss_pred C--CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcch
Q 003987 716 Y--HPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSS 758 (781)
Q Consensus 716 ~--d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~ 758 (781)
. |+++++++|.+++ .||+.++++++.+++.. +..+|+.
T Consensus 351 ~~~~~~~l~~ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~ 390 (398)
T 4fzr_A 351 EQAGVESVLAACARIR----DDSSYVGNARRLAAEMA-TLPTPAD 390 (398)
T ss_dssp ------CHHHHHHHHH----HCTHHHHHHHHHHHHHT-TSCCHHH
T ss_pred ccCCHHHHHHHHHHHH----hCHHHHHHHHHHHHHHH-cCCCHHH
Confidence 7 7889999998887 79999999998887765 5566643
No 36
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.68 E-value=5.3e-16 Score=171.70 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=110.9
Q ss_pred CCCCEEEEEeeccCC-CChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 003987 570 RSKPIVFSMARLDHV-KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 648 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~-Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~ 648 (781)
..+++++++|++... |+...+.+++..+.+. ++++++++++.+. +.+. ++.++|++.|+
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~--~~~~v~~~g~~~~------------~~l~------~~~~~v~~~~~ 290 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGEV--DADFVLALGDLDI------------SPLG------TLPRNVRAVGW 290 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS--SSEEEEECTTSCC------------GGGC------SCCTTEEEESS
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHcC--CCEEEEEECCcCh------------hhhc------cCCCcEEEEcc
Confidence 345677888999654 3555555555555443 6899999988651 1111 35688999995
Q ss_pred ccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEE----cCccccc--cccccCCeEEEECCC--CHHH
Q 003987 649 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFA----TCHGGPA--EIIEHGASGFHIDPY--HPDQ 720 (781)
Q Consensus 649 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVa----T~~gG~~--EiI~dg~~G~lv~p~--d~~~ 720 (781)
++. ..+++ .+|++|.. +-+.|+.|||++|+|+|+ .+.++.+ +.+++.+.|+.+++. ++++
T Consensus 291 ----~~~---~~ll~-~ad~~v~~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~ 358 (398)
T 3oti_A 291 ----TPL---HTLLR-TCTAVVHH----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADL 358 (398)
T ss_dssp ----CCH---HHHHT-TCSEEEEC----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHH
T ss_pred ----CCH---HHHHh-hCCEEEEC----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHH
Confidence 434 44555 59999975 345799999999999999 5678888 999999999999876 5555
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHH
Q 003987 721 AAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVI 769 (781)
Q Consensus 721 lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll 769 (781)
++ +++ .||++++++++.+.+.. +..+|+ .+++..++++
T Consensus 359 l~----~ll----~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~l~ 396 (398)
T 3oti_A 359 LR----RLI----GDESLRTAAREVREEMV-ALPTPA--ETVRRIVERI 396 (398)
T ss_dssp HH----HHH----HCHHHHHHHHHHHHHHH-TSCCHH--HHHHHHHHHH
T ss_pred HH----HHH----cCHHHHHHHHHHHHHHH-hCCCHH--HHHHHHHHHh
Confidence 55 444 79999999988887765 566663 4555555553
No 37
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.68 E-value=8.9e-16 Score=168.83 Aligned_cols=159 Identities=13% Similarity=0.108 Sum_probs=109.2
Q ss_pred CCCCEEEEEeeccCCC--ChHHHHHHHHHhhccCCCeEEEE-EeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEe
Q 003987 570 RSKPIVFSMARLDHVK--NMTGLVECYGKNSQLRELVNLVV-VAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 646 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~K--gl~~LieA~~~l~~~~~~v~LvI-VG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~fl 646 (781)
..+.++++.|+....+ .+..++++++ +. + +++++ +|++.+ .+.+. .+.++|++.
T Consensus 230 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~---~~-~-~~~~~~~g~~~~------------~~~~~------~~~~~v~~~ 286 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEHPEFFRACAQAFA---DT-P-WHVVMAIGGFLD------------PAVLG------PLPPNVEAH 286 (402)
T ss_dssp TCCEEEEECCSCSSCCHHHHHHHHHHHT---TS-S-CEEEEECCTTSC------------GGGGC------SCCTTEEEE
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHHh---cC-C-cEEEEEeCCcCC------------hhhhC------CCCCcEEEe
Confidence 3455678889987665 2334444433 22 2 56655 554433 11111 256789999
Q ss_pred ccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEE-----cCccccccccccCCeEEEECCC--CHH
Q 003987 647 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFA-----TCHGGPAEIIEHGASGFHIDPY--HPD 719 (781)
Q Consensus 647 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVa-----T~~gG~~EiI~dg~~G~lv~p~--d~~ 719 (781)
|+. +.. .+++ .+|++|..+- ..|++|||++|+|+|+ .+..+.++.+.+.+.|..++++ +++
T Consensus 287 ~~~----~~~---~ll~-~ad~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~ 354 (402)
T 3ia7_A 287 QWI----PFH---SVLA-HARACLTHGT----TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPA 354 (402)
T ss_dssp SCC----CHH---HHHT-TEEEEEECCC----HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHH
T ss_pred cCC----CHH---HHHh-hCCEEEECCC----HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHH
Confidence 953 333 5666 5999998853 3789999999999994 4455778888888999999876 899
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHH
Q 003987 720 QAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVIN 770 (781)
Q Consensus 720 ~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll~ 770 (781)
+++++|.+++ .|++.++++++.+.+.. +..++ ..+++..++++.
T Consensus 355 ~l~~~~~~ll----~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~i~~~~~ 398 (402)
T 3ia7_A 355 SIREAVERLA----ADSAVRERVRRMQRDIL-SSGGP--ARAADEVEAYLG 398 (402)
T ss_dssp HHHHHHHHHH----HCHHHHHHHHHHHHHHH-TSCHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCHHHHHHHHHHHHHHh-hCChH--HHHHHHHHHHHh
Confidence 9999998887 79999999988776654 44444 345555666553
No 38
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.67 E-value=9.5e-16 Score=171.28 Aligned_cols=269 Identities=16% Similarity=0.146 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHcCCCceEEEEcCCCc-hHHHHHHHHHcCCcEEEEecCCcccCCCCChhhHhhhhccccchhhhhH
Q 003987 389 LETFTEDVGSEITAELQGFPDFIIGNYSDG-NLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTA 467 (781)
Q Consensus 389 l~~f~~~~~~~i~~~~~~kpDIIh~~~~~~-~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~ 467 (781)
.......+.+.+.+. +||+||++.... .+.+.+++++.|+|++....++ .+ + +.++...+. ..
T Consensus 99 ~~~~~~~l~~~l~~~---kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~agl-rs-~---~~~~~~p~~--------~~ 162 (403)
T 3ot5_A 99 TSRVMNGINEVIAAE---NPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGL-RT-W---NKYSPFPEE--------MN 162 (403)
T ss_dssp HHHHHHHHHHHHHHH---CCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCC-CC-S---CTTSSTTHH--------HH
T ss_pred HHHHHHHHHHHHHHc---CCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCc-cc-c---ccccCCcHH--------HH
Confidence 334444555566555 999999988654 5666788999999976443222 11 0 001000000 01
Q ss_pred HHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecC-CCcCCCCCCCcHHHHHHhhh
Q 003987 468 DLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSP-GADMDIYFPYSEKQKRLTAL 546 (781)
Q Consensus 468 e~~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpn-GvD~~~f~p~~~~~~r~~~~ 546 (781)
....-..+|.+++.|+...+.+. ..|++ ..++.++.| ++|...+.+.....
T Consensus 163 r~~~~~~a~~~~~~se~~~~~l~--------------------~~Gi~--~~~i~vvGn~~~D~~~~~~~~~~~------ 214 (403)
T 3ot5_A 163 RQLTGVMADIHFSPTKQAKENLL--------------------AEGKD--PATIFVTGNTAIDALKTTVQKDYH------ 214 (403)
T ss_dssp HHHHHHHCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHSCTTCC------
T ss_pred HHHHHHhcCEEECCCHHHHHHHH--------------------HcCCC--cccEEEeCCchHHHHHhhhhhhcc------
Confidence 11234458999999987654211 12443 678999987 45543221111000
Q ss_pred hcchhhhccCccccccccCCCCCCCCCEEEEEeeccC-CCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHH
Q 003987 547 HGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDH-VKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIA 625 (781)
Q Consensus 547 ~~~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~-~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~ 625 (781)
.+..+.+ ++++.++++.||... .|++..+++|+.++.+.+|+++++++++...
T Consensus 215 -----------~~~~~~l----~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~----------- 268 (403)
T 3ot5_A 215 -----------HPILENL----GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNP----------- 268 (403)
T ss_dssp -----------CHHHHSC----TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCH-----------
T ss_pred -----------hHHHHhc----cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCH-----------
Confidence 0000111 223345666777644 4789999999999988788999988753211
Q ss_pred HHHHHHHHHHH-cCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc-Cccccccc
Q 003987 626 EIEKMHELMKT-YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT-CHGGPAEI 703 (781)
Q Consensus 626 ~~~~l~~li~e-lgL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT-~~gG~~Ei 703 (781)
.+++.+++ ++..++|+++| .+...++..+++. +|++|.+| |-..+|||+||+|+|++ +.|+..|.
T Consensus 269 ---~~~~~l~~~~~~~~~v~l~~----~l~~~~~~~l~~~-ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~ 335 (403)
T 3ot5_A 269 ---AVREKAMAILGGHERIHLIE----PLDAIDFHNFLRK-SYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTERPEG 335 (403)
T ss_dssp ---HHHHHHHHHHTTCTTEEEEC----CCCHHHHHHHHHH-EEEEEECC-----HHHHHHGGGTTCCEEECCSSCSCHHH
T ss_pred ---HHHHHHHHHhCCCCCEEEeC----CCCHHHHHHHHHh-cCEEEECC-----ccHHHHHHHhCCCEEEecCCCcchhh
Confidence 12222222 34457899998 5666789999995 99999998 44448999999999999 78888898
Q ss_pred cccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003987 704 IEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGG 746 (781)
Q Consensus 704 I~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a 746 (781)
++.| +|+++++ |++++++++.+++ .|++.+++|++++
T Consensus 336 v~~g-~~~lv~~-d~~~l~~ai~~ll----~~~~~~~~m~~~~ 372 (403)
T 3ot5_A 336 IEAG-TLKLIGT-NKENLIKEALDLL----DNKESHDKMAQAA 372 (403)
T ss_dssp HHHT-SEEECCS-CHHHHHHHHHHHH----HCHHHHHHHHHSC
T ss_pred eeCC-cEEEcCC-CHHHHHHHHHHHH----cCHHHHHHHHhhc
Confidence 8766 8999976 9999999998887 7999999988654
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.63 E-value=2.8e-14 Score=158.21 Aligned_cols=158 Identities=10% Similarity=0.033 Sum_probs=106.9
Q ss_pred CCCCEEEEEeeccCCCC--hHHHHHHHHHhhccCCCeEEEE-EeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEe
Q 003987 570 RSKPIVFSMARLDHVKN--MTGLVECYGKNSQLRELVNLVV-VAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 646 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~Kg--l~~LieA~~~l~~~~~~v~LvI-VG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~fl 646 (781)
..+.++++.|++...++ +..++++++ + .+ +++++ +|++.+ .+.+. .+.++|++.
T Consensus 246 ~~~~v~v~~Gs~~~~~~~~~~~~~~al~---~-~~-~~~v~~~g~~~~------------~~~l~------~~~~~v~~~ 302 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRPGFFRDCARAFD---G-QP-WHVVMTLGGQVD------------PAALG------DLPPNVEAH 302 (415)
T ss_dssp CCCEEEEECTTTSCCCHHHHHHHHHHHT---T-SS-CEEEEECTTTSC------------GGGGC------CCCTTEEEE
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHh---c-CC-cEEEEEeCCCCC------------hHHhc------CCCCcEEEE
Confidence 34556778898865432 333344333 2 23 77777 454433 11111 356789999
Q ss_pred ccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc----CccccccccccCCeEEEECCC--CHHH
Q 003987 647 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT----CHGGPAEIIEHGASGFHIDPY--HPDQ 720 (781)
Q Consensus 647 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT----~~gG~~EiI~dg~~G~lv~p~--d~~~ 720 (781)
|+ ++.. .+++ .+|++|..+- ..|+.|||++|+|+|+. +....++.+.+.+.|..+++. ++++
T Consensus 303 ~~----~~~~---~ll~-~ad~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~ 370 (415)
T 3rsc_A 303 RW----VPHV---KVLE-QATVCVTHGG----MGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDT 370 (415)
T ss_dssp SC----CCHH---HHHH-HEEEEEESCC----HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHH
T ss_pred ec----CCHH---HHHh-hCCEEEECCc----HHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHH
Confidence 84 4443 5566 5999998752 36899999999999994 555677788888899999876 8899
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHH
Q 003987 721 AAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVI 769 (781)
Q Consensus 721 lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll 769 (781)
++++|.+++ .|++.++++++.+.+.. +...+ ..+++..++++
T Consensus 371 l~~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~i~~~~ 412 (415)
T 3rsc_A 371 LLAAVGAVA----ADPALLARVEAMRGHVR-RAGGA--ARAADAVEAYL 412 (415)
T ss_dssp HHHHHHHHH----TCHHHHHHHHHHHHHHH-HSCHH--HHHHHHHHHHH
T ss_pred HHHHHHHHH----cCHHHHHHHHHHHHHHH-hcCHH--HHHHHHHHHHh
Confidence 999998887 89999999988776654 44444 34445555554
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.62 E-value=1.7e-14 Score=158.57 Aligned_cols=139 Identities=15% Similarity=0.129 Sum_probs=104.3
Q ss_pred CCEEEEEeeccCC-------CChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEE
Q 003987 572 KPIVFSMARLDHV-------KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR 644 (781)
Q Consensus 572 k~iIl~vGRL~~~-------Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~ 644 (781)
..+++++|++... +.+..+++++++. ++++++++++.. .+.+. . ++++|+
T Consensus 211 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~------------~~~l~----~--~~~~v~ 267 (384)
T 2p6p_A 211 QRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-----DVELIVAAPDTV------------AEALR----A--EVPQAR 267 (384)
T ss_dssp CEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-----TCEEEEECCHHH------------HHHHH----H--HCTTSE
T ss_pred CEEEEECCCCCccccccccHHHHHHHHHHHhcC-----CcEEEEEeCCCC------------HHhhC----C--CCCceE
Confidence 4578899999875 5677788887653 578888776532 22222 1 357899
Q ss_pred EeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCCeEEEECCC--CH
Q 003987 645 WIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--HP 718 (781)
Q Consensus 645 flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG----~~EiI~dg~~G~lv~p~--d~ 718 (781)
+ |+ ++..+ +++ .+|+||..+ -+.|++|||++|+|+|++..++ .++.+++.+.|+.+++. ++
T Consensus 268 ~-~~----~~~~~---~l~-~~d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~ 334 (384)
T 2p6p_A 268 V-GW----TPLDV---VAP-TCDLLVHHA----GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDST 334 (384)
T ss_dssp E-EC----CCHHH---HGG-GCSEEEECS----CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCH
T ss_pred E-cC----CCHHH---HHh-hCCEEEeCC----cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCH
Confidence 9 94 44444 456 599999974 3569999999999999997643 67777777889999875 78
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 003987 719 DQAAELMADFFGKCKENPSHWKKISDGGLKRI 750 (781)
Q Consensus 719 ~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~ 750 (781)
++++++|.+++ .|+++++++++.+.+..
T Consensus 335 ~~l~~~i~~ll----~~~~~~~~~~~~~~~~~ 362 (384)
T 2p6p_A 335 EAIADSCQELQ----AKDTYARRAQDLSREIS 362 (384)
T ss_dssp HHHHHHHHHHH----HCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCHHHHHHHHHHHHHHH
Confidence 99999998887 79999998888776554
No 41
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.46 E-value=5.8e-13 Score=149.62 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=112.2
Q ss_pred CCEEEEEeeccC-----CCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEe
Q 003987 572 KPIVFSMARLDH-----VKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 646 (781)
Q Consensus 572 k~iIl~vGRL~~-----~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~fl 646 (781)
..++++.|++.. .|.+..++++++++ ++++++++++.. .+.+. ++.++|++.
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~------------~~~l~------~~~~~v~~~ 324 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV-----DAEIIATFDAQQ------------LEGVA------NIPDNVRTV 324 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS-----SSEEEECCCTTT------------TSSCS------SCCSSEEEC
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC-----CCEEEEEECCcc------------hhhhc------cCCCCEEEe
Confidence 447788999875 48888999998764 478888777644 11110 356789999
Q ss_pred ccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCCeEEEECCC--CHHH
Q 003987 647 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIEHGASGFHIDPY--HPDQ 720 (781)
Q Consensus 647 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~g----G~~EiI~dg~~G~lv~p~--d~~~ 720 (781)
| .++..++ +. ++|++|.. +-+.|+.|||++|+|+|+...+ +.++.+++.+.|+.+++. ++++
T Consensus 325 ~----~~~~~~l---l~-~ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 392 (441)
T 2yjn_A 325 G----FVPMHAL---LP-TCAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQ 392 (441)
T ss_dssp C----SCCHHHH---GG-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHH
T ss_pred c----CCCHHHH---Hh-hCCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHH
Confidence 9 4454444 55 59999985 3467999999999999999764 366777777899999876 8899
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHh
Q 003987 721 AAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINV 771 (781)
Q Consensus 721 lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll~~ 771 (781)
++++|.+++ .|+++++++++.+.+.. +...+ ..+++..++++..
T Consensus 393 l~~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~i~~~~~~ 436 (441)
T 2yjn_A 393 LRESVKRVL----DDPAHRAGAARMRDDML-AEPSP--AEVVGICEELAAG 436 (441)
T ss_dssp HHHHHHHHH----HCHHHHHHHHHHHHHHH-TSCCH--HHHHHHHHHHHHC
T ss_pred HHHHHHHHh----cCHHHHHHHHHHHHHHH-cCCCH--HHHHHHHHHHHHh
Confidence 999998887 79999999988776654 34443 3555666666644
No 42
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.40 E-value=1.2e-12 Score=145.33 Aligned_cols=263 Identities=11% Similarity=0.075 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHcCCcEEEEecCCcccCCCCChhhHhhhhccccchhhhhHHH
Q 003987 390 ETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADL 469 (781)
Q Consensus 390 ~~f~~~~~~~i~~~~~~kpDIIh~~~~~~~lva~llar~~gvp~v~t~H~l~~~k~~~s~~~~k~~~~~y~f~~~~~~e~ 469 (781)
......+.+.+.+. +||+|+++.......+.+.|++.|+|++....++ .+ + +..+ .+. ....
T Consensus 80 ~~~~~~l~~~l~~~---kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eagl-rs-~---~~~~--pee--------~nR~ 141 (385)
T 4hwg_A 80 GLVIEKVDEVLEKE---KPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGN-RC-F---DQRV--PEE--------INRK 141 (385)
T ss_dssp HHHHHHHHHHHHHH---CCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCC-CC-S---CTTS--THH--------HHHH
T ss_pred HHHHHHHHHHHHhc---CCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCC-cc-c---cccC--cHH--------HHHH
Confidence 33444555555555 9999999876543334788899999965443322 11 0 0000 000 0111
Q ss_pred HHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCCceEEecCC-CcCCCCCCCcHHHHHHhhhhc
Q 003987 470 IAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG-ADMDIYFPYSEKQKRLTALHG 548 (781)
Q Consensus 470 ~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnG-vD~~~f~p~~~~~~r~~~~~~ 548 (781)
..-..+|.+++.|+...+.+. ..|++ ..++.++.|. +|...+.. . ..
T Consensus 142 ~~~~~a~~~~~~te~~~~~l~--------------------~~G~~--~~~I~vtGnp~~D~~~~~~--~---~~----- 189 (385)
T 4hwg_A 142 IIDHISDVNITLTEHARRYLI--------------------AEGLP--AELTFKSGSHMPEVLDRFM--P---KI----- 189 (385)
T ss_dssp HHHHHCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCSHHHHHHHHH--H---HH-----
T ss_pred HHHhhhceeecCCHHHHHHHH--------------------HcCCC--cCcEEEECCchHHHHHHhh--h---hc-----
Confidence 233568999999987654211 12443 5688888863 34211100 0 00
Q ss_pred chhhhccCccccccccCCCCCCCCCEEEEEeecc---CCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHH
Q 003987 549 SIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLD---HVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIA 625 (781)
Q Consensus 549 ~i~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~---~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~ 625 (781)
...+.++.+|+ ++++.++++.+|.. ..|++..+++|+.++.+.. ++.+++..+ +
T Consensus 190 -------~~~~~~~~lgl--~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~-~~~vv~p~~-p------------ 246 (385)
T 4hwg_A 190 -------LKSDILDKLSL--TPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY-NFLIIFSTH-P------------ 246 (385)
T ss_dssp -------HHCCHHHHTTC--CTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH-CCEEEEEEC-H------------
T ss_pred -------chhHHHHHcCC--CcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC-CeEEEEECC-h------------
Confidence 01123345776 34444566677643 4478999999999987644 577776543 2
Q ss_pred HHHHHHHHHHHc-C-C--CCcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc-cc
Q 003987 626 EIEKMHELMKTY-K-L--DGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG-GP 700 (781)
Q Consensus 626 ~~~~l~~li~el-g-L--~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~g-G~ 700 (781)
.+++.++++ + + .++|++++ ++...++..+++. +|+++.+| |....|||++|+|+|..+.. +.
T Consensus 247 ---~~~~~l~~~~~~~~~~~~v~l~~----~lg~~~~~~l~~~-adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter 313 (385)
T 4hwg_A 247 ---RTKKRLEDLEGFKELGDKIRFLP----AFSFTDYVKLQMN-AFCILSDS-----GTITEEASILNLPALNIREAHER 313 (385)
T ss_dssp ---HHHHHHHTSGGGGGTGGGEEECC----CCCHHHHHHHHHH-CSEEEECC-----TTHHHHHHHTTCCEEECSSSCSC
T ss_pred ---HHHHHHHHHHHHhcCCCCEEEEc----CCCHHHHHHHHHh-CcEEEECC-----ccHHHHHHHcCCCEEEcCCCccc
Confidence 134445554 3 2 46899987 5666788888995 99999887 55679999999999998543 46
Q ss_pred ccccccCCeEEEECCCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 003987 701 AEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISD 744 (781)
Q Consensus 701 ~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~ 744 (781)
.|.++.| ++.++.+ |++++++++.+++ .|+..+++|++
T Consensus 314 ~e~v~~G-~~~lv~~-d~~~i~~ai~~ll----~d~~~~~~m~~ 351 (385)
T 4hwg_A 314 PEGMDAG-TLIMSGF-KAERVLQAVKTIT----EEHDNNKRTQG 351 (385)
T ss_dssp THHHHHT-CCEECCS-SHHHHHHHHHHHH----TTCBTTBCCSC
T ss_pred hhhhhcC-ceEEcCC-CHHHHHHHHHHHH----hChHHHHHhhc
Confidence 6777666 6777754 8999999998887 67666555544
No 43
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.40 E-value=3.6e-12 Score=150.10 Aligned_cols=331 Identities=15% Similarity=0.046 Sum_probs=206.9
Q ss_pred CceEEEEcCCCchHHHH-HHHHH--------------cCCcEEEEecCCcccCC---CCC-------h-------hhHhh
Q 003987 407 FPDFIIGNYSDGNLVAS-LLAYK--------------MGITQCTIAHALEKTKY---PDS-------D-------IYWKK 454 (781)
Q Consensus 407 kpDIIh~~~~~~~lva~-llar~--------------~gvp~v~t~H~l~~~k~---~~s-------~-------~~~k~ 454 (781)
+||+||+|.+.++++.. ++... .+.+.++|.|++-+... +.. . +.+..
T Consensus 289 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~~ 368 (796)
T 2c4m_A 289 EFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQIFQQLFWRVWEIIAEIDRRF 368 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHHhhhCCHHHHHHHhHHHHHHHcCcCHHH
Confidence 69999999999876555 44222 35678999999866542 100 0 00000
Q ss_pred hh-------------c-cccchhhhhHHHHHHhhCCEEEecCHHHHhhcccc-ccccccccccccccceeeeccCCCCCC
Q 003987 455 FD-------------E-KYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNT-VGQYESHTAFTLPGLYRVVHGIDVFDP 519 (781)
Q Consensus 455 ~~-------------~-~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~-v~qyes~~~f~l~~ly~v~~gi~~f~~ 519 (781)
+. . ...+-.++.--..++..++.|-++|..-.+-+++. ++ ++++ ..+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~~f~-----------~~~~------~~p~ 431 (796)
T 2c4m_A 369 RLERAADGLDEETINRMAPIQHGTVHMAWIACYAAYSINGVAALHTEIIKAETLA-----------DWYA------LWPE 431 (796)
T ss_dssp HHHHHHTTCCHHHHHHHCSEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHTTTH-----------HHHH------HCGG
T ss_pred HHHHHhcCCcHhhhhcccceeCCcccHHHHHHHhcCceeeccHHHHHHhhhhhhh-----------hHHH------cCcc
Confidence 00 0 00001123334568889999999998776655532 11 1221 2256
Q ss_pred ceEEecCCCcCCCCCC--CcHHHHHHhhhhc------------c----hh------hh----ccCccc----cccccCCC
Q 003987 520 KFNIVSPGADMDIYFP--YSEKQKRLTALHG------------S----IE------QL----LFDPEQ----NDEHVGTL 567 (781)
Q Consensus 520 k~~VIpnGvD~~~f~p--~~~~~~r~~~~~~------------~----i~------~~----l~~~~~----~~~~~g~l 567 (781)
|++-|.||||...+-. .+.....+..... . ++ ++ ..++.. .+++.|+.
T Consensus 432 kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~ 511 (796)
T 2c4m_A 432 KFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIE 511 (796)
T ss_dssp GEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999998832 1221111111000 0 00 01 111122 24556887
Q ss_pred CCCCCCEEEEEeeccCCCChHH-HHHHHHHhhc--cC-----CCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHH----
Q 003987 568 SDRSKPIVFSMARLDHVKNMTG-LVECYGKNSQ--LR-----ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK---- 635 (781)
Q Consensus 568 ~~~~k~iIl~vGRL~~~Kgl~~-LieA~~~l~~--~~-----~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~---- 635 (781)
.+++.+.++++.|+..+|+.+. ++..+.++.+ .. ..+++++.|.+.. .+......++.+.++++
T Consensus 512 vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P----~y~~aK~iIk~i~~va~~in~ 587 (796)
T 2c4m_A 512 IDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAP----GYVRAKAIIKLINSIADLVNN 587 (796)
T ss_dssp CCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCT----TCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCH----hHHHHHHHHHHHHHHHHHhcc
Confidence 7889999999999999999999 7887776653 21 2588988888865 23344445555666665
Q ss_pred HcCCCC--cEEEeccccCcCChHHHHHHHHccCcEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCcccccccccc--CCe
Q 003987 636 TYKLDG--QFRWIAAQTNRARNGELYRYIADTKGAFVQPAF--YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEH--GAS 709 (781)
Q Consensus 636 elgL~~--~V~flG~~~~~v~~~el~~~la~aadvfV~PS~--~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~d--g~~ 709 (781)
.-...+ +|.|+. .. +..+.+.+..++|++.+||. +|++|+.=+=||..|.++|.|-.|...|+.++ .+|
T Consensus 588 dp~~~~~lKVvFl~----nY-~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~N 662 (796)
T 2c4m_A 588 DPEVSPLLKVVFVE----NY-NVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEEN 662 (796)
T ss_dssp CTTTTTTEEEEEET----TC-CHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGG
T ss_pred ccccCCceEEEEEC----CC-CHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCc
Confidence 113457 788885 23 44566666667999999999 99999999999999999999998999888765 469
Q ss_pred EEEECC--CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchh-hhccchHHH
Q 003987 710 GFHIDP--YHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSD-GIVDPSPFV 768 (781)
Q Consensus 710 G~lv~p--~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~-~il~~ye~l 768 (781)
||+|.. .++.++-.. .+..+....+| .++++-+.+.. ..|||... ...++|..+
T Consensus 663 gF~FG~~~~ev~~l~~~-y~a~~~y~~~~-~~~~vvd~~~~---g~fs~~~~~~y~~Ly~~L 719 (796)
T 2c4m_A 663 AYIFGARVEELPALRES-YKPYELYETVP-GLKRALDALDN---GTLNDNNSGLFYDLKHSL 719 (796)
T ss_dssp SEEESCCTTTHHHHHHT-CCHHHHHHHST-THHHHHHTTTS---SSSCCTTCCHHHHHHHHH
T ss_pred EEEecCchhhHHHHHHh-hChHHHhhcCH-HHHHHHHHHHc---CCCCCCCHHHHHHHHHHH
Confidence 999976 677776554 33333333555 45555555543 67999764 333444444
No 44
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.37 E-value=6.8e-12 Score=147.78 Aligned_cols=333 Identities=12% Similarity=0.006 Sum_probs=207.3
Q ss_pred CceEEEEcCCCchHHHH-HHHHH--------------cCCcEEEEecCCcccCC---CCC-------hhhH--hhhhc--
Q 003987 407 FPDFIIGNYSDGNLVAS-LLAYK--------------MGITQCTIAHALEKTKY---PDS-------DIYW--KKFDE-- 457 (781)
Q Consensus 407 kpDIIh~~~~~~~lva~-llar~--------------~gvp~v~t~H~l~~~k~---~~s-------~~~~--k~~~~-- 457 (781)
+||+||+|.+.++++.. ++... .+.+.++|.|++-+... +.. .... ..+..
T Consensus 299 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~f 378 (796)
T 1l5w_A 299 DYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRF 378 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CccEEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHhhhhcCCHHHHHHHhHHHHHHHhccCHHH
Confidence 69999999999876555 34222 47889999999866542 100 0000 00000
Q ss_pred ------------------cccchhhhhHHHHHHhhCCEEEecCHHHHhhccccccccccccccccccceeeeccCCCCCC
Q 003987 458 ------------------KYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDP 519 (781)
Q Consensus 458 ------------------~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qyes~~~f~l~~ly~v~~gi~~f~~ 519 (781)
...+-.++.--..++..++.|-++|..-.+-+++.. .++++ ..++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~----------f~~~~------~~~p~ 442 (796)
T 1l5w_A 379 KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDL----------FPEYH------QLWPN 442 (796)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEETTEEEHHHHHHHHSSEEEESSHHHHHHHHHTT----------SHHHH------HHCGG
T ss_pred HHHHHHhcCCcHHHHhhhhcccCCcccHHHHHHHhcCccccccHHHHHHHHhHH----------hhHHH------HhCcc
Confidence 000001233344678899999999987766554321 01122 12356
Q ss_pred ceEEecCCCcCCCCCC--CcHHHHHHh---------------hhhcchh------hh----ccCccc----cccccCCCC
Q 003987 520 KFNIVSPGADMDIYFP--YSEKQKRLT---------------ALHGSIE------QL----LFDPEQ----NDEHVGTLS 568 (781)
Q Consensus 520 k~~VIpnGvD~~~f~p--~~~~~~r~~---------------~~~~~i~------~~----l~~~~~----~~~~~g~l~ 568 (781)
|++-|.||||...+-. .+.....+. ++.+-++ ++ ..++.. .+++.|+..
T Consensus 443 k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~v 522 (796)
T 1l5w_A 443 KFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEI 522 (796)
T ss_dssp GEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8999999999877621 111111111 0000000 01 111111 234578877
Q ss_pred CCCCCEEEEEeeccCCCChHH-HHHHHHHhhc--cC-----CCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHH----H
Q 003987 569 DRSKPIVFSMARLDHVKNMTG-LVECYGKNSQ--LR-----ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK----T 636 (781)
Q Consensus 569 ~~~k~iIl~vGRL~~~Kgl~~-LieA~~~l~~--~~-----~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~----e 636 (781)
+++.+.++++.|+..+|+.+. ++..+.++.+ .. ..+++++.|.+.. .+......++.+.++++ .
T Consensus 523 dpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P----~y~~aK~iIk~i~~va~~in~D 598 (796)
T 1l5w_A 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAP----GYYLAKNIIFAINKVADVINND 598 (796)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCT----TCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCCh----hHHHHHHHHHHHHHHHHHhccc
Confidence 889999999999999999999 7777766643 11 2488988888865 23344444555666665 1
Q ss_pred cCCCC--cEEEeccccCcCChHHHHHHHHccCcEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCcccccccccc--CCeE
Q 003987 637 YKLDG--QFRWIAAQTNRARNGELYRYIADTKGAFVQPAF--YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEH--GASG 710 (781)
Q Consensus 637 lgL~~--~V~flG~~~~~v~~~el~~~la~aadvfV~PS~--~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~d--g~~G 710 (781)
-...+ +|.|+. .. +..+.+.+..++|++.+||. +|++|+.=+=||..|.++|.|-.|...|+.++ .+||
T Consensus 599 p~~~~~lKVvfl~----nY-~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~Ng 673 (796)
T 1l5w_A 599 PLVGDKLKVVFLP----DY-CVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENI 673 (796)
T ss_dssp TTTGGGEEEEECS----SC-CHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGS
T ss_pred cccCCceEEEEEC----CC-CHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhccCCCcE
Confidence 13456 788885 23 44566666667999999999 99999999999999999999999999998765 4699
Q ss_pred EEECCCCHHHHHHH---HHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHHHhc
Q 003987 711 FHIDPYHPDQAAEL---MADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVINVI 772 (781)
Q Consensus 711 ~lv~p~d~~~lA~~---I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll~~~ 772 (781)
|+|.. +++++.+. ..+..+....+| .++++-+.+.. ..|||... ..|+.+++.+
T Consensus 674 F~FG~-~~~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~~~---g~fs~~~~---~~y~~Ly~~L 730 (796)
T 1l5w_A 674 FIFGH-TVEQVKAILAKGYDPVKWRKKDK-VLDAVLKELES---GKYSDGDK---HAFDQMLHSI 730 (796)
T ss_dssp EECSC-CHHHHHHHHHHCCCHHHHHHHCH-HHHHHHHHHHH---TTTTTTCT---TTTHHHHHHT
T ss_pred EEecC-CHHHHHHHHHcccCHHHHhhcCH-HHHHHHHHHHc---CCCCCCcH---HHHHHHHHHH
Confidence 99987 77776632 211222223566 46666665543 67999763 4466666554
No 45
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.37 E-value=3.3e-11 Score=134.01 Aligned_cols=137 Identities=12% Similarity=0.087 Sum_probs=97.7
Q ss_pred CCCCEEEEEeecc-CCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 003987 570 RSKPIVFSMARLD-HVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 648 (781)
Q Consensus 570 ~~k~iIl~vGRL~-~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~ 648 (781)
..++++++.|++. ..+.+..+++++++. +++++++++.... +..++.++|++.+
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~-----~~~vv~~~g~~~~-------------------~~~~~~~~v~~~~- 274 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ-----GRRVVLSSGWAGL-------------------GRIDEGDDCLVVG- 274 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT-----TCCEEEECTTTTC-------------------CCSSCCTTEEEES-
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC-----CCEEEEEeCCccc-------------------ccccCCCCEEEec-
Confidence 3466788899998 677778888888765 3667777665431 0123468899998
Q ss_pred ccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCCeEEEECCC--CHHHHH
Q 003987 649 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--HPDQAA 722 (781)
Q Consensus 649 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG----~~EiI~dg~~G~lv~p~--d~~~lA 722 (781)
.++..++. . .+|++|..+- ..|+.|||++|+|+|+...++ ..+.+++.+.|..+++. +.++++
T Consensus 275 ---~~~~~~ll---~-~~d~~v~~gG----~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~ 343 (404)
T 3h4t_A 275 ---EVNHQVLF---G-RVAAVVHHGG----AGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLS 343 (404)
T ss_dssp ---SCCHHHHG---G-GSSEEEECCC----HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHH
T ss_pred ---CCCHHHHH---h-hCcEEEECCc----HHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHH
Confidence 45555544 4 5999998752 379999999999999975543 34456666789888754 789999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 003987 723 ELMADFFGKCKENPSHWKKISDGGL 747 (781)
Q Consensus 723 ~~I~~~l~~l~~dp~~~~~~s~~a~ 747 (781)
++|.+++ . +++++++++.+.
T Consensus 344 ~ai~~ll----~-~~~~~~~~~~~~ 363 (404)
T 3h4t_A 344 AALATAL----T-PGIRARAAAVAG 363 (404)
T ss_dssp HHHHHHT----S-HHHHHHHHHHHT
T ss_pred HHHHHHh----C-HHHHHHHHHHHH
Confidence 9998776 6 887777666543
No 46
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.35 E-value=1.7e-10 Score=128.46 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=97.4
Q ss_pred CCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEE-EEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 003987 570 RSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLV-VVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 648 (781)
Q Consensus 570 ~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~Lv-IVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~ 648 (781)
+.+.++++.|++. .+....+.+++..+.+ .+++++ ++|.+.+ .+.+ -.++++|++.++
T Consensus 254 ~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~--~~~~~~~~~g~~~~------------~~~~------~~~~~~v~~~~~ 312 (424)
T 2iya_A 254 GRPVLLIALGSAF-TDHLDFYRTCLSAVDG--LDWHVVLSVGRFVD------------PADL------GEVPPNVEVHQW 312 (424)
T ss_dssp SCCEEEEECCSSS-CCCHHHHHHHHHHHTT--CSSEEEEECCTTSC------------GGGG------CSCCTTEEEESS
T ss_pred CCCEEEEEcCCCC-cchHHHHHHHHHHHhc--CCcEEEEEECCcCC------------hHHh------ccCCCCeEEecC
Confidence 3455678889987 3343444444444433 356774 4566543 1111 125678999994
Q ss_pred ccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCCeEEEECCC--CHHHHH
Q 003987 649 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIEHGASGFHIDPY--HPDQAA 722 (781)
Q Consensus 649 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~g----G~~EiI~dg~~G~lv~p~--d~~~lA 722 (781)
++.. .+++ .+|++|..+ -..+++|||++|+|+|+.... ..++.+.+.+.|..+++. ++++++
T Consensus 313 ----~~~~---~~l~-~~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~ 380 (424)
T 2iya_A 313 ----VPQL---DILT-KASAFITHA----GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLR 380 (424)
T ss_dssp ----CCHH---HHHT-TCSEEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHH
T ss_pred ----CCHH---HHHh-hCCEEEECC----chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHH
Confidence 4433 4666 599999863 247999999999999999654 345566677789998765 889999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHH
Q 003987 723 ELMADFFGKCKENPSHWKKISDGGLKR 749 (781)
Q Consensus 723 ~~I~~~l~~l~~dp~~~~~~s~~a~~~ 749 (781)
++|.+++ .|++.++++++.+.+.
T Consensus 381 ~~i~~ll----~~~~~~~~~~~~~~~~ 403 (424)
T 2iya_A 381 EAVLAVA----SDPGVAERLAAVRQEI 403 (424)
T ss_dssp HHHHHHH----HCHHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCHHHHHHHHHHHHHH
Confidence 9998887 7998888887766553
No 47
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.32 E-value=2e-11 Score=144.21 Aligned_cols=261 Identities=10% Similarity=0.022 Sum_probs=171.0
Q ss_pred hhHHHHHHhhCCEEEecCHHHHhhcccc-ccccccccccccccceeeeccCCCCCCceEEecCCCcCCCC----CCCcHH
Q 003987 465 FTADLIAMNNADFIITSTYQEIAGTKNT-VGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIY----FPYSEK 539 (781)
Q Consensus 465 ~~~e~~a~~~AD~IIt~S~~~~~~~k~~-v~qyes~~~f~l~~ly~v~~gi~~f~~k~~VIpnGvD~~~f----~p~~~~ 539 (781)
+.--..++..++.|-++|..-.+-+++. ++ ++|+ ....|++-|.||||...+ .|...
T Consensus 428 vnMa~lai~~S~~VNgVS~lH~e~ik~~~f~-----------~~~~------~~p~k~~~iTNGI~~rrWl~~~NP~l~- 489 (824)
T 2gj4_A 428 INMAHLCIAGSHAVNGVARIHSEILKKTIFK-----------DFYE------LEPHKFQNKTNGITPRRWLVLCNPGLA- 489 (824)
T ss_dssp EEHHHHHHHTCSCEEESSHHHHHHHHHTTTH-----------HHHH------HCGGGEEECCCCBCTCCCCCCTCHHHH-
T ss_pred ccHHHHHHHhcCceeeEcHHHHHHHhhHHhH-----------HHHH------cChhhcccccCCcChhhhcccCCHhHH-
Confidence 3334568899999999998766655422 22 1221 125689999999999988 33211
Q ss_pred HHHHhh---------------hhc-----ch-----hhhccCccc----cccccCCCCCCCCCEEEEEeeccCCCChHHH
Q 003987 540 QKRLTA---------------LHG-----SI-----EQLLFDPEQ----NDEHVGTLSDRSKPIVFSMARLDHVKNMTGL 590 (781)
Q Consensus 540 ~~r~~~---------------~~~-----~i-----~~~l~~~~~----~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~L 590 (781)
..+.. +.+ .+ +-...++.. ..+..|+..+++.+.++++.|+..+|+.+.+
T Consensus 490 -~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~ 568 (824)
T 2gj4_A 490 -EIIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLN 568 (824)
T ss_dssp -HHHHHHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHH
T ss_pred -HHHHHhcCchhhhCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhH
Confidence 11110 000 01 000111111 3345788778899999999999999999997
Q ss_pred -HHHHHHhhc--cCC-----CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcC----CCC--cEEEeccccCcCChH
Q 003987 591 -VECYGKNSQ--LRE-----LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYK----LDG--QFRWIAAQTNRARNG 656 (781)
Q Consensus 591 -ieA~~~l~~--~~~-----~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elg----L~~--~V~flG~~~~~v~~~ 656 (781)
+..+.++.+ ..| ++++++.|.+.. .+...+..++.+.++++.++ +.+ +|.|+. .. +.
T Consensus 569 ~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P----~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~----nY-dv 639 (824)
T 2gj4_A 569 CLHVITLYNRIKKEPNKFVVPRTVMIGGKAAP----GYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLE----NY-RV 639 (824)
T ss_dssp HHHHHHHHHHHHHCTTSCCCCEEEEEECCCCT----TCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEET----TC-CH
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCH----hHHHHHHHHHHHHHHHHHhccCcccCCceEEEEEC----CC-CH
Confidence 777666631 122 578988888865 24444555666777777653 345 788885 23 44
Q ss_pred HHHHHHHccCcEEEEcCC--CCCCcHHHHHHHHcCCcEEEcCccccccccc--cCCeEEEECCCCHHHHHHHHH----HH
Q 003987 657 ELYRYIADTKGAFVQPAF--YEAFGLTVVEAMTCGLPTFATCHGGPAEIIE--HGASGFHIDPYHPDQAAELMA----DF 728 (781)
Q Consensus 657 el~~~la~aadvfV~PS~--~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~--dg~~G~lv~p~d~~~lA~~I~----~~ 728 (781)
.+.+.+..++|++.+||. +|++|++=+=||..|.++|+|-.|...|+.+ ..+|||+|... ++++ ..+. +.
T Consensus 640 slA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~-~~ev-~~l~~~~~~a 717 (824)
T 2gj4_A 640 SLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMR-VEDV-DRLDQRGYNA 717 (824)
T ss_dssp HHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCC-HHHH-HHHHHHCCCH
T ss_pred HHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeCCc-HHHH-HHHHHcCCCH
Confidence 566666667999999999 9999999999999999999999898888865 46689999875 6666 4441 11
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHhcCcchh
Q 003987 729 FGKCKENPSHWKKISDGGLKRIYERLVVSSD 759 (781)
Q Consensus 729 l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~ 759 (781)
.+....++ .|+++-+... ...|+|...
T Consensus 718 ~~~Y~~~~-~l~~v~d~i~---~g~fs~~~~ 744 (824)
T 2gj4_A 718 QEYYDRIP-ELRQIIEQLS---SGFFSPKQP 744 (824)
T ss_dssp HHHHHHCH-HHHHHHHHHH---HTTTCTTST
T ss_pred HHHhcCCH-HHHHHHHHHH---hCCCCCCCh
Confidence 11112344 4455544443 467999764
No 48
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.31 E-value=4.6e-11 Score=138.19 Aligned_cols=186 Identities=10% Similarity=-0.010 Sum_probs=133.2
Q ss_pred ccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEE--EEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCC
Q 003987 563 HVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLV--VVAGYIDVNKSKDREEIAEIEKMHELMKTYKLD 640 (781)
Q Consensus 563 ~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~Lv--IVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~ 640 (781)
.+|++.+.+.+++++.+++ .|....++++++++.+..|+..|+ ++|++..+ ...+.+.+.+.|+.
T Consensus 432 ~~~lp~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~-----------~~~~~~~~~~~GI~ 498 (631)
T 3q3e_A 432 DYLLRENPEVVNIGIASTT--MKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGI-----------THPYVERFIKSYLG 498 (631)
T ss_dssp CCCCCSCCSEEEEEEEECS--TTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGG-----------GHHHHHHHHHHHHG
T ss_pred cccCCcCCCeEEEEECCcc--ccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchh-----------hHHHHHHHHHcCCC
Confidence 3566322335667777764 788999999999999888887775 35643220 11222334567888
Q ss_pred CcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccccccccc------cCCeEEEEC
Q 003987 641 GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIE------HGASGFHID 714 (781)
Q Consensus 641 ~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~------dg~~G~lv~ 714 (781)
++|.|.| ..+..+....++. +|+++-|+.+.| |+|.+|||+||+|||+...++...-+. -|..++++.
T Consensus 499 ~Rv~F~g----~~p~~e~la~y~~-aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA 572 (631)
T 3q3e_A 499 DSATAHP----HSPYHQYLRILHN-CDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIA 572 (631)
T ss_dssp GGEEEEC----CCCHHHHHHHHHT-CSEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEE
T ss_pred ccEEEcC----CCCHHHHHHHHhc-CcEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceec
Confidence 8999999 6777888888895 999999998765 999999999999999976555554442 244444232
Q ss_pred CCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--hcCcchhhhccchHHHHHhc
Q 003987 715 PYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYE--RLVVSSDGIVDPSPFVINVI 772 (781)
Q Consensus 715 p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~--~ysw~~~~il~~ye~ll~~~ 772 (781)
.|.++++++..++. .|++.+++++++.+++... -|+.....+.+.|+++++.+
T Consensus 573 -~d~eeYv~~Av~La----~D~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~~w 627 (631)
T 3q3e_A 573 -NTVDEYVERAVRLA----ENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNAF 627 (631)
T ss_dssp -SSHHHHHHHHHHHH----HCHHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHh----CCHHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHHHH
Confidence 27999999998877 8999999999999988655 45533345556666666654
No 49
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.25 E-value=3.6e-10 Score=125.81 Aligned_cols=136 Identities=11% Similarity=0.026 Sum_probs=95.4
Q ss_pred CCCEEEEEeec-cCCCChHHHHHHHHHhhccCCCeEEEEE-eCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 003987 571 SKPIVFSMARL-DHVKNMTGLVECYGKNSQLRELVNLVVV-AGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 648 (781)
Q Consensus 571 ~k~iIl~vGRL-~~~Kgl~~LieA~~~l~~~~~~v~LvIV-G~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~ 648 (781)
...++++.|++ ...|.+..++++++++. .+++++ |.+.. . ...+.++|++.|
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~~-----~~~v~~~g~~~~--------------~------~~~~~~~v~~~~- 291 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAHG-----RRVILSRGWADL--------------V------LPDDGADCFAIG- 291 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHTT-----CCEEECTTCTTC--------------C------CSSCGGGEEECS-
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHCC-----CeEEEEeCCCcc--------------c------ccCCCCCEEEeC-
Confidence 35678889999 58888888899987752 455555 55432 0 013457899998
Q ss_pred ccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCCeEEEECCC--CHHHHH
Q 003987 649 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--HPDQAA 722 (781)
Q Consensus 649 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG----~~EiI~dg~~G~lv~p~--d~~~lA 722 (781)
.++..++ +. ++|+||..+ -..|+.|||++|+|+|+....+ .++.+++.+.|..+++. +.++++
T Consensus 292 ---~~~~~~~---l~-~~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~ 360 (415)
T 1iir_A 292 ---EVNHQVL---FG-RVAAVIHHG----GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLS 360 (415)
T ss_dssp ---SCCHHHH---GG-GSSEEEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHH
T ss_pred ---cCChHHH---Hh-hCCEEEeCC----ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHH
Confidence 4555555 45 699999864 2369999999999999986544 56667777789998754 788888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 003987 723 ELMADFFGKCKENPSHWKKISDGGLK 748 (781)
Q Consensus 723 ~~I~~~l~~l~~dp~~~~~~s~~a~~ 748 (781)
++|.+ + .|++.++++.+.+.+
T Consensus 361 ~~i~~----l-~~~~~~~~~~~~~~~ 381 (415)
T 1iir_A 361 AALAT----A-LTPETHARATAVAGT 381 (415)
T ss_dssp HHHHH----H-TSHHHHHHHHHHHHH
T ss_pred HHHHH----H-cCHHHHHHHHHHHHH
Confidence 88854 4 678887776665543
No 50
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.21 E-value=5e-10 Score=124.58 Aligned_cols=135 Identities=11% Similarity=-0.015 Sum_probs=94.4
Q ss_pred CCCEEEEEeecc---CCCChHHHHHHHHHhhccCCCeEEEEE-eCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEe
Q 003987 571 SKPIVFSMARLD---HVKNMTGLVECYGKNSQLRELVNLVVV-AGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 646 (781)
Q Consensus 571 ~k~iIl~vGRL~---~~Kgl~~LieA~~~l~~~~~~v~LvIV-G~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~fl 646 (781)
.+.++++.|++. ..|.+..++++++++ +++++++ |.+.. + . ..++++|++.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~-------------~-~------~~~~~~v~~~ 291 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ-----GRRVILSRGWTEL-------------V-L------PDDRDDCFAI 291 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT-----TCCEEEECTTTTC-------------C-C------SCCCTTEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC-----CCeEEEEeCCccc-------------c-c------cCCCCCEEEe
Confidence 356788889985 467777788888765 3556665 54422 0 0 1356789999
Q ss_pred ccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCCeEEEECC--CCHHH
Q 003987 647 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIEHGASGFHIDP--YHPDQ 720 (781)
Q Consensus 647 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~g----G~~EiI~dg~~G~lv~p--~d~~~ 720 (781)
+ .++..++ +. ++|++|.-+ -..|+.|||++|+|+|+.... ..++.+++.+.|..++. .+.++
T Consensus 292 ~----~~~~~~l---l~-~~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 359 (416)
T 1rrv_A 292 D----EVNFQAL---FR-RVAAVIHHG----SAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFES 359 (416)
T ss_dssp S----SCCHHHH---GG-GSSEEEECC----CHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHH
T ss_pred c----cCChHHH---hc-cCCEEEecC----ChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHH
Confidence 8 4555554 45 699999843 246999999999999997543 35566777778998865 47888
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003987 721 AAELMADFFGKCKENPSHWKKISDGGL 747 (781)
Q Consensus 721 lA~~I~~~l~~l~~dp~~~~~~s~~a~ 747 (781)
++++|. ++ .|+++++++++.+.
T Consensus 360 l~~~i~----~l-~~~~~~~~~~~~~~ 381 (416)
T 1rrv_A 360 LSAALT----TV-LAPETRARAEAVAG 381 (416)
T ss_dssp HHHHHH----HH-TSHHHHHHHHHHTT
T ss_pred HHHHHH----Hh-hCHHHHHHHHHHHH
Confidence 888885 45 68888877766543
No 51
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.19 E-value=6.2e-11 Score=130.27 Aligned_cols=157 Identities=13% Similarity=0.156 Sum_probs=97.5
Q ss_pred CCCEEEEEeeccCCCC-hHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccc
Q 003987 571 SKPIVFSMARLDHVKN-MTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQ 649 (781)
Q Consensus 571 ~k~iIl~vGRL~~~Kg-l~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~ 649 (781)
..+++++.|++...++ ...+.+++..+.+ .+..+++++++.+.. ....++++|.+.+
T Consensus 237 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~--~~~~~v~~~~~~~~~------------------~~~~~~~~v~~~~-- 294 (400)
T 4amg_A 237 RRRIAVTLGSIDALSGGIAKLAPLFSEVAD--VDAEFVLTLGGGDLA------------------LLGELPANVRVVE-- 294 (400)
T ss_dssp CCEEEECCCSCC--CCSSSTTHHHHHHGGG--SSSEEEEECCTTCCC------------------CCCCCCTTEEEEC--
T ss_pred CcEEEEeCCcccccCccHHHHHHHHHHhhc--cCceEEEEecCcccc------------------ccccCCCCEEEEe--
Confidence 4456777888876543 3444455555544 246666666554411 1124678899998
Q ss_pred cCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcC----ccccccccccCCeEEEECCCCHHHHHHHH
Q 003987 650 TNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATC----HGGPAEIIEHGASGFHIDPYHPDQAAELM 725 (781)
Q Consensus 650 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~----~gG~~EiI~dg~~G~lv~p~d~~~lA~~I 725 (781)
.++..++ +. .+|+||.- +-..++.|||++|+|+|+.. ....++.+++.+.|..+++. +..+++|
T Consensus 295 --~~p~~~l---L~-~~~~~v~h----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~--~~~~~al 362 (400)
T 4amg_A 295 --WIPLGAL---LE-TCDAIIHH----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAG--SLGAEQC 362 (400)
T ss_dssp --CCCHHHH---HT-TCSEEEEC----CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTT--TCSHHHH
T ss_pred --ecCHHHH---hh-hhhheecc----CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCC--CchHHHH
Confidence 5555554 45 59999875 34579999999999999964 33456667776788888754 4467888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHH
Q 003987 726 ADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFV 768 (781)
Q Consensus 726 ~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~l 768 (781)
.+++ +||+++++..+.+.+.. +.= .....++..|++
T Consensus 363 ~~lL----~d~~~r~~a~~l~~~~~-~~~--~~~~~a~~le~l 398 (400)
T 4amg_A 363 RRLL----DDAGLREAALRVRQEMS-EMP--PPAETAAXLVAL 398 (400)
T ss_dssp HHHH----HCHHHHHHHHHHHHHHH-TSC--CHHHHHHHHHHH
T ss_pred HHHH----cCHHHHHHHHHHHHHHH-cCC--CHHHHHHHHHHh
Confidence 8777 79998877655443322 221 123455555554
No 52
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.02 E-value=6.6e-10 Score=108.01 Aligned_cols=134 Identities=11% Similarity=0.099 Sum_probs=100.8
Q ss_pred CCCEEEEEeecc---CCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEec
Q 003987 571 SKPIVFSMARLD---HVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIA 647 (781)
Q Consensus 571 ~k~iIl~vGRL~---~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG 647 (781)
.+.+++++|++. ..|++..++++++++ ++++++++++..+ + ++.++|++.|
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~~------------~---------~~~~~v~~~~ 74 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQI-----PQKVLWRFDGNKP------------D---------TLGLNTRLYK 74 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTS-----SSEEEEECCSSCC------------T---------TCCTTEEEES
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhC-----CCeEEEEECCcCc------------c---------cCCCcEEEec
Confidence 356788999986 667788888887543 3688888876541 0 2467899999
Q ss_pred cccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCCeEEEECCC--CHHHH
Q 003987 648 AQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIEHGASGFHIDPY--HPDQA 721 (781)
Q Consensus 648 ~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~g----G~~EiI~dg~~G~lv~p~--d~~~l 721 (781)
.++..++..+ + ++|++|.. +-+.|+.|||++|+|+|++... +.++.+++.+.|+.+++. +++++
T Consensus 75 ----~~~~~~~l~~-~-~ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l 144 (170)
T 2o6l_A 75 ----WIPQNDLLGH-P-KTRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDL 144 (170)
T ss_dssp ----SCCHHHHHTS-T-TEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHH
T ss_pred ----CCCHHHHhcC-C-CcCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHH
Confidence 4555555533 5 59999986 3468999999999999999764 457778888899999877 88999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHH
Q 003987 722 AELMADFFGKCKENPSHWKKISD 744 (781)
Q Consensus 722 A~~I~~~l~~l~~dp~~~~~~s~ 744 (781)
+++|.+++ .|++.++++.+
T Consensus 145 ~~~i~~ll----~~~~~~~~a~~ 163 (170)
T 2o6l_A 145 LNALKRVI----NDPSYKENVMK 163 (170)
T ss_dssp HHHHHHHH----HCHHHHHHHHH
T ss_pred HHHHHHHH----cCHHHHHHHHH
Confidence 99998887 78876555443
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.89 E-value=0.00013 Score=87.01 Aligned_cols=183 Identities=9% Similarity=0.015 Sum_probs=128.7
Q ss_pred cccccCCCCCCCCCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCC
Q 003987 560 NDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL 639 (781)
Q Consensus 560 ~~~~~g~l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL 639 (781)
.+..+|+ +.+.+++++..++ .|=-...++.+.++.+..|+.+|++...... ..+.+++.+++.|+
T Consensus 513 ~R~~~gL--p~~~v~f~~fN~~--~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~-----------~~~~l~~~~~~~gi 577 (723)
T 4gyw_A 513 TRSQYGL--PEDAIVYCNFNQL--YKIDPSTLQMWANILKRVPNSVLWLLRFPAV-----------GEPNIQQYAQNMGL 577 (723)
T ss_dssp EGGGGTC--CTTSEEEECCSCG--GGCCHHHHHHHHHHHHHCSSEEEEEEETTGG-----------GHHHHHHHHHHTTC
T ss_pred chhhcCC--CCCCEEEEeCCcc--ccCCHHHHHHHHHHHHhCCCCeEEEEeCcHH-----------HHHHHHHHHHhcCC
Confidence 4566788 5556555555554 4556788888888888889999999876543 14567888899998
Q ss_pred C-CcEEEeccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcccccc-----cccc-CCeEEE
Q 003987 640 D-GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAE-----IIEH-GASGFH 712 (781)
Q Consensus 640 ~-~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG~~E-----iI~d-g~~G~l 712 (781)
+ ++|.|.+ ..+..+....+.. +|+++=|--|-| |.|..||+.+|+|||+-....... ++.. |-.-++
T Consensus 578 ~~~r~~f~~----~~~~~~~l~~~~~-~Di~LDt~p~~g-~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~i 651 (723)
T 4gyw_A 578 PQNRIIFSP----VAPKEEHVRRGQL-ADVCLDTPLCNG-HTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELI 651 (723)
T ss_dssp CGGGEEEEE----CCCHHHHHHHGGG-CSEEECCSSSCC-SHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGB
T ss_pred CcCeEEECC----CCCHHHHHHHhCC-CeEEeCCCCcCC-HHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccc
Confidence 4 6899998 5667788888885 999999877655 899999999999999864222111 1110 111222
Q ss_pred ECCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCcchhhhccchHHHH
Q 003987 713 IDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERLVVSSDGIVDPSPFVI 769 (781)
Q Consensus 713 v~p~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~~~~ysw~~~~il~~ye~ll 769 (781)
. .|.++..+...++. .|++.+.++.+.-+++....-=++....++.+|+.+
T Consensus 652 a--~~~~~Y~~~a~~la----~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~ 702 (723)
T 4gyw_A 652 A--KNRQEYEDIAVKLG----TDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLY 702 (723)
T ss_dssp C--SSHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHH
T ss_pred c--CCHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHH
Confidence 2 48899888887776 899999999998888876644455544444444443
No 54
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.85 E-value=0.0098 Score=67.30 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=62.4
Q ss_pred CCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccc-cCCeEEEE
Q 003987 640 DGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIE-HGASGFHI 713 (781)
Q Consensus 640 ~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~g----G~~EiI~-dg~~G~lv 713 (781)
.+++...+ +++..+ +++. +.++||.= +=..++.||+++|+|+|+-... ..+..+. +-+.|..+
T Consensus 352 ~~~~~v~~----~~pq~~---~L~h~~~~~~vth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l 420 (482)
T 2pq6_A 352 ADRGLIAS----WCPQDK---VLNHPSIGGFLTH----CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI 420 (482)
T ss_dssp TTTEEEES----CCCHHH---HHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEEC
T ss_pred CCCEEEEe----ecCHHH---HhcCCCCCEEEec----CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEE
Confidence 46788887 444443 5542 13446664 2256899999999999997433 3344443 55678888
Q ss_pred CC-CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 003987 714 DP-YHPDQAAELMADFFGKCKENPSHWKKISDGGLKRI 750 (781)
Q Consensus 714 ~p-~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~ 750 (781)
+. -+.++++++|.+++ .|++ .+++.+++++..
T Consensus 421 ~~~~~~~~l~~~i~~ll----~~~~-~~~~r~~a~~l~ 453 (482)
T 2pq6_A 421 DTNVKREELAKLINEVI----AGDK-GKKMKQKAMELK 453 (482)
T ss_dssp CSSCCHHHHHHHHHHHH----TSHH-HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH----cCCc-HHHHHHHHHHHH
Confidence 62 37889999998877 7876 356666665544
No 55
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.78 E-value=0.0087 Score=67.82 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=45.2
Q ss_pred HHHHccCc--EEEEcCCCCCCcHHHHHHHHcCCcEEEcCc----ccccccc-ccCCeEEEECCC-----CHHHHHHHHHH
Q 003987 660 RYIADTKG--AFVQPAFYEAFGLTVVEAMTCGLPTFATCH----GGPAEII-EHGASGFHIDPY-----HPDQAAELMAD 727 (781)
Q Consensus 660 ~~la~aad--vfV~PS~~E~fGltvlEAMa~GlPVVaT~~----gG~~EiI-~dg~~G~lv~p~-----d~~~lA~~I~~ 727 (781)
.+++ .++ +||.= +=-.+++||+++|+|+|+-.. ...+..+ +.-+.|..++.. +.++++++|.+
T Consensus 351 ~vL~-h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~ 425 (480)
T 2vch_A 351 QVLA-HPSTGGFLTH----CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKG 425 (480)
T ss_dssp HHHH-STTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHH
T ss_pred HHhC-CCCcCeEEec----ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHHHHHHHHHH
Confidence 4454 466 45553 123589999999999999743 3344454 566788887643 78899999988
Q ss_pred HH
Q 003987 728 FF 729 (781)
Q Consensus 728 ~l 729 (781)
++
T Consensus 426 vl 427 (480)
T 2vch_A 426 LM 427 (480)
T ss_dssp HH
T ss_pred Hh
Confidence 87
No 56
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.76 E-value=0.0021 Score=72.40 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=64.0
Q ss_pred CCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc----cccccccccC-CeEEEE
Q 003987 640 DGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCH----GGPAEIIEHG-ASGFHI 713 (781)
Q Consensus 640 ~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~----gG~~EiI~dg-~~G~lv 713 (781)
.+++...+ +++.. .+++. ++|+||.=. =..++.||+++|+|+|+-.. ...+..+++. +.|..+
T Consensus 324 ~~~~~v~~----w~pq~---~vL~h~~~~~fvth~----G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l 392 (456)
T 2c1x_A 324 RGYGMVVP----WAPQA---EVLAHEAVGAFVTHC----GWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI 392 (456)
T ss_dssp TTTEEEES----CCCHH---HHHTSTTEEEEEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEEC
T ss_pred CCceEEec----CCCHH---HHhcCCcCCEEEecC----CcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEe
Confidence 36788887 44443 34552 257777742 25699999999999999743 2345556666 788888
Q ss_pred CCC--CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 003987 714 DPY--HPDQAAELMADFFGKCKENPSHWKKISDGGLKRI 750 (781)
Q Consensus 714 ~p~--d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~~ 750 (781)
+.. +.++++++|.+++ .|++ .+++.+++++..
T Consensus 393 ~~~~~~~~~l~~~i~~ll----~~~~-~~~~r~~a~~l~ 426 (456)
T 2c1x_A 393 EGGVFTKSGLMSCFDQIL----SQEK-GKKLRENLRALR 426 (456)
T ss_dssp GGGSCCHHHHHHHHHHHH----HSHH-HHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHH----CCCc-HHHHHHHHHHHH
Confidence 632 6889999998877 6775 455666555543
No 57
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.64 E-value=0.012 Score=66.31 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=57.4
Q ss_pred CcEEEeccccCcCChHHHHHHHH-ccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc----cccccc-cccCCeEEEE-
Q 003987 641 GQFRWIAAQTNRARNGELYRYIA-DTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCH----GGPAEI-IEHGASGFHI- 713 (781)
Q Consensus 641 ~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~----gG~~Ei-I~dg~~G~lv- 713 (781)
+++...+ +++..+ +++ .++|+||.=. =..++.||+++|+|+|+-.. ...+.. ++.-+.|..+
T Consensus 332 ~~~~v~~----w~pq~~---vL~h~~~~~fvth~----G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~ 400 (463)
T 2acv_A 332 GKGMICG----WAPQVE---VLAHKAIGGFVSHC----GWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLR 400 (463)
T ss_dssp CSEEEES----SCCHHH---HHHSTTEEEEEECC----CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESC
T ss_pred CCEEEEc----cCCHHH---HhCCCccCeEEecC----CchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEe
Confidence 4677777 444433 454 1367787752 25799999999999999743 234445 4666789888
Q ss_pred C---C----CCHHHHHHHHHHHHHhccC-CHHHHHHH
Q 003987 714 D---P----YHPDQAAELMADFFGKCKE-NPSHWKKI 742 (781)
Q Consensus 714 ~---p----~d~~~lA~~I~~~l~~l~~-dp~~~~~~ 742 (781)
+ . -+.++++++|.+++ + +++.+++.
T Consensus 401 ~~~~~~~~~~~~~~l~~ai~~ll----~~~~~~r~~a 433 (463)
T 2acv_A 401 VDYRKGSDVVAAEEIEKGLKDLM----DKDSIVHKKV 433 (463)
T ss_dssp SSCCTTCCCCCHHHHHHHHHHHT----CTTCTHHHHH
T ss_pred cccCCCCccccHHHHHHHHHHHH----hccHHHHHHH
Confidence 2 2 37889999998776 4 44554443
No 58
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.64 E-value=0.0068 Score=68.30 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=61.8
Q ss_pred CCcEEEeccccCcCChHHHHHHHHccCc--EEEEcCCCCCCcHHHHHHHHcCCcEEEcCc----cccccccccC-CeEEE
Q 003987 640 DGQFRWIAAQTNRARNGELYRYIADTKG--AFVQPAFYEAFGLTVVEAMTCGLPTFATCH----GGPAEIIEHG-ASGFH 712 (781)
Q Consensus 640 ~~~V~flG~~~~~v~~~el~~~la~aad--vfV~PS~~E~fGltvlEAMa~GlPVVaT~~----gG~~EiI~dg-~~G~l 712 (781)
.+++...+ +++..++. + .++ +||.=. =-.+++||+++|+|+|+-.. .-.+..+++. +.|..
T Consensus 326 ~~~~~vv~----w~Pq~~vL---~-h~~v~~fvtH~----G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~ 393 (454)
T 3hbf_A 326 KTKGKIVA----WAPQVEIL---K-HSSVGVFLTHS----GWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVG 393 (454)
T ss_dssp TTTEEEES----SCCHHHHH---H-STTEEEEEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEE
T ss_pred CCceEEEe----eCCHHHHH---h-hcCcCeEEecC----CcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEE
Confidence 46788888 55554444 4 477 566542 13689999999999999743 2344556664 78888
Q ss_pred ECC--CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 003987 713 IDP--YHPDQAAELMADFFGKCKENPSHWKKISDGGLKR 749 (781)
Q Consensus 713 v~p--~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a~~~ 749 (781)
++. -+.++++++|.+++ .++ ..+++++++++.
T Consensus 394 l~~~~~~~~~l~~av~~ll----~~~-~~~~~r~~a~~l 427 (454)
T 3hbf_A 394 VDNGVLTKESIKKALELTM----SSE-KGGIMRQKIVKL 427 (454)
T ss_dssp CGGGSCCHHHHHHHHHHHH----SSH-HHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHH----CCC-hHHHHHHHHHHH
Confidence 864 47889999998887 664 234455555443
No 59
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.42 E-value=0.0053 Score=64.82 Aligned_cols=94 Identities=13% Similarity=0.154 Sum_probs=61.8
Q ss_pred CCEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccC
Q 003987 572 KPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTN 651 (781)
Q Consensus 572 k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~ 651 (781)
+.+++++|..+...-...+++++.+. .. -.+|.|.+.. ..+++++.+++. +++++.++..
T Consensus 158 ~~ILv~~GG~d~~~l~~~vl~~L~~~----~~-i~vv~G~~~~-----------~~~~l~~~~~~~---~~v~v~~~~~- 217 (282)
T 3hbm_A 158 YDFFICMGGTDIKNLSLQIASELPKT----KI-ISIATSSSNP-----------NLKKLQKFAKLH---NNIRLFIDHE- 217 (282)
T ss_dssp EEEEEECCSCCTTCHHHHHHHHSCTT----SC-EEEEECTTCT-----------THHHHHHHHHTC---SSEEEEESCS-
T ss_pred CeEEEEECCCchhhHHHHHHHHhhcC----CC-EEEEECCCch-----------HHHHHHHHHhhC---CCEEEEeCHH-
Confidence 34677888776544333445554322 12 3455666643 145566655543 4799998644
Q ss_pred cCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcC
Q 003987 652 RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATC 696 (781)
Q Consensus 652 ~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~ 696 (781)
++..+|+. +|+.|.++ |.|+.|++++|+|+|.-.
T Consensus 218 -----~m~~~m~~-aDlvI~~g-----G~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 218 -----NIAKLMNE-SNKLIISA-----SSLVNEALLLKANFKAIC 251 (282)
T ss_dssp -----CHHHHHHT-EEEEEEES-----SHHHHHHHHTTCCEEEEC
T ss_pred -----HHHHHHHH-CCEEEECC-----cHHHHHHHHcCCCEEEEe
Confidence 47788884 99999952 689999999999999864
No 60
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.36 E-value=0.0074 Score=64.56 Aligned_cols=100 Identities=18% Similarity=0.063 Sum_probs=66.0
Q ss_pred CCEEEEEee-ccCCCChH--HHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcC--C-CCcEEE
Q 003987 572 KPIVFSMAR-LDHVKNMT--GLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYK--L-DGQFRW 645 (781)
Q Consensus 572 k~iIl~vGR-L~~~Kgl~--~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elg--L-~~~V~f 645 (781)
+.+++..|. ..+.|.+. .+.+++..+.+. +++++++|+..+ .+...++.+..+ . ...+.+
T Consensus 181 ~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e------------~~~~~~i~~~~~~~~~~~~~~l 246 (348)
T 1psw_A 181 PMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKD------------HEAGNEILAALNTEQQAWCRNL 246 (348)
T ss_dssp CEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGG------------HHHHHHHHTTSCHHHHTTEEEC
T ss_pred cEEEEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhh------------HHHHHHHHHhhhhccccceEec
Confidence 345566676 55667766 788888877654 689999886543 222333333221 0 122456
Q ss_pred eccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc
Q 003987 646 IAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT 695 (781)
Q Consensus 646 lG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT 695 (781)
.| ..+..++..+++. +|++|... .|..-+ |.|+|+|+|+-
T Consensus 247 ~g----~~sl~e~~ali~~-a~l~I~~D----sg~~Hl-Aaa~g~P~v~l 286 (348)
T 1psw_A 247 AG----ETQLDQAVILIAA-CKAIVTND----SGLMHV-AAALNRPLVAL 286 (348)
T ss_dssp TT----TSCHHHHHHHHHT-SSEEEEES----SHHHHH-HHHTTCCEEEE
T ss_pred cC----cCCHHHHHHHHHh-CCEEEecC----CHHHHH-HHHcCCCEEEE
Confidence 66 5678899999995 99999985 244434 99999999985
No 61
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=96.46 E-value=0.15 Score=54.93 Aligned_cols=102 Identities=14% Similarity=0.158 Sum_probs=68.3
Q ss_pred CCCCCE-EEEEeeccCCCCh--HHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEE
Q 003987 569 DRSKPI-VFSMARLDHVKNM--TGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRW 645 (781)
Q Consensus 569 ~~~k~i-Il~vGRL~~~Kgl--~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~f 645 (781)
++++++ .+..|.=...|.+ +.+.+.+..+.+. +++++++|+..+ .+..+++++.++ ...+.+
T Consensus 182 ~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e------------~~~~~~i~~~~~-~~~~~l 246 (349)
T 3tov_A 182 TDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMD------------LEMVQPVVEQME-TKPIVA 246 (349)
T ss_dssp CTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTT------------HHHHHHHHHTCS-SCCEEC
T ss_pred CCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcch------------HHHHHHHHHhcc-cccEEe
Confidence 334454 4556654456665 4677777777654 578888876543 334445555544 233566
Q ss_pred eccccCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc
Q 003987 646 IAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT 695 (781)
Q Consensus 646 lG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT 695 (781)
.| ..+-.|+..+++. +|++|..- .|..-+ |.++|+|+|+-
T Consensus 247 ~g----~~sl~e~~ali~~-a~~~i~~D----sG~~Hl-Aaa~g~P~v~l 286 (349)
T 3tov_A 247 TG----KFQLGPLAAAMNR-CNLLITND----SGPMHV-GISQGVPIVAL 286 (349)
T ss_dssp TT----CCCHHHHHHHHHT-CSEEEEES----SHHHHH-HHTTTCCEEEE
T ss_pred eC----CCCHHHHHHHHHh-CCEEEECC----CCHHHH-HHhcCCCEEEE
Confidence 66 6778899999995 99999983 255555 99999999996
No 62
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=95.57 E-value=0.11 Score=61.91 Aligned_cols=142 Identities=11% Similarity=0.015 Sum_probs=101.7
Q ss_pred CCCCC-----CCCCEEEEEeeccCCCChHH-HHHH---HHHhhcc-------------CCCeEEEEEeCcCCCCCCcchH
Q 003987 565 GTLSD-----RSKPIVFSMARLDHVKNMTG-LVEC---YGKNSQL-------------RELVNLVVVAGYIDVNKSKDRE 622 (781)
Q Consensus 565 g~l~~-----~~k~iIl~vGRL~~~Kgl~~-LieA---~~~l~~~-------------~~~v~LvIVG~g~~~~~~~d~e 622 (781)
|+..+ ++...++++-|+..+|.... ++.. +.+++.. .....+++.|.... .|..
T Consensus 588 g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP----~y~~ 663 (879)
T 1ygp_A 588 GVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAP----GYYM 663 (879)
T ss_dssp TCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCT----TCHH
T ss_pred CcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCC----CcHH
Confidence 66557 77888999999999999988 4554 3333332 12366666665433 2444
Q ss_pred HHHHHHHHHHHHHHc----CCCC--cEEEeccccCcCChHHHHHHHHccCcEEEEcCC--CCCCcHHHHHHHHcCCcEEE
Q 003987 623 EIAEIEKMHELMKTY----KLDG--QFRWIAAQTNRARNGELYRYIADTKGAFVQPAF--YEAFGLTVVEAMTCGLPTFA 694 (781)
Q Consensus 623 e~~~~~~l~~li~el----gL~~--~V~flG~~~~~v~~~el~~~la~aadvfV~PS~--~E~fGltvlEAMa~GlPVVa 694 (781)
-...++.+.++++-. .+.+ +|.|+. .... .+.+.|-.++|+-.+-|. .|+.|..=+=+|.-|.++++
T Consensus 664 aK~iIklI~~va~~iN~Dp~v~~~LKVVFle----nY~V-slAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlg 738 (879)
T 1ygp_A 664 AKLIIKLINCVADIVNNDESIEHLLKVVFVA----DYNV-SKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIG 738 (879)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGTTSEEEEEET----TCCH-HHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHhccChhhCCceEEEEeC----CCCH-HHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeee
Confidence 445556666666522 2445 789986 3444 455555557999999875 79999999999999999999
Q ss_pred cCcccccccccc--CCeEEEECC
Q 003987 695 TCHGGPAEIIEH--GASGFHIDP 715 (781)
Q Consensus 695 T~~gG~~EiI~d--g~~G~lv~p 715 (781)
|-.|...|+.++ .+|+|+|-.
T Consensus 739 tlDGanvEi~e~vG~eN~fiFG~ 761 (879)
T 1ygp_A 739 TVDGANVEITREIGEDNVFLFGN 761 (879)
T ss_dssp ESCTHHHHHHHHHCGGGSEEESC
T ss_pred cccchhHHHHHHcCcccEEEccC
Confidence 999999999876 559999964
No 63
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=87.55 E-value=1.6 Score=45.88 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=64.6
Q ss_pred CCEEEEEeeccCCCChH--HHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccc
Q 003987 572 KPIVFSMARLDHVKNMT--GLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQ 649 (781)
Q Consensus 572 k~iIl~vGRL~~~Kgl~--~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~ 649 (781)
+.+++..|.=...|... .+.+.+..+.+. +++++++++++. +.+..+++.+.. +++.+.|
T Consensus 179 ~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~~g~~~-----------e~~~~~~i~~~~---~~~~l~g-- 240 (326)
T 2gt1_A 179 EYAVFLHATTRDDKHWPEEHWRELIGLLADS--GIRIKLPWGAPH-----------EEERAKRLAEGF---AYVEVLP-- 240 (326)
T ss_dssp SEEEEECCCSSGGGSCCHHHHHHHHHHTTTT--CCEEEECCSSHH-----------HHHHHHHHHTTC---TTEEECC--
T ss_pred CEEEEEeCCCCccccCCHHHHHHHHHHHHHC--CCcEEEecCCHH-----------HHHHHHHHHhhC---CcccccC--
Confidence 34455566545566665 777777777542 688888755432 122333343332 3466777
Q ss_pred cCcCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEc
Q 003987 650 TNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT 695 (781)
Q Consensus 650 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT 695 (781)
..+-.|+..+++. +|++|..-. |..=+ |.|.|+|+|+-
T Consensus 241 --~~sl~el~ali~~-a~l~I~~DS----G~~Hl-Aaa~g~P~v~l 278 (326)
T 2gt1_A 241 --KMSLEGVARVLAG-AKFVVSVDT----GLSHL-TAALDRPNITV 278 (326)
T ss_dssp --CCCHHHHHHHHHT-CSEEEEESS----HHHHH-HHHTTCCEEEE
T ss_pred --CCCHHHHHHHHHh-CCEEEecCC----cHHHH-HHHcCCCEEEE
Confidence 6778999999995 999999832 55555 77799999985
No 64
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=84.28 E-value=0.68 Score=46.92 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=41.7
Q ss_pred HHHHHHH-ccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCccc---c-----ccccccCCeEEEECCCCHHHHHHHHHH
Q 003987 657 ELYRYIA-DTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG---P-----AEIIEHGASGFHIDPYHPDQAAELMAD 727 (781)
Q Consensus 657 el~~~la-~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~gG---~-----~EiI~dg~~G~lv~p~d~~~lA~~I~~ 727 (781)
++..+|+ . +|++|.=+ =..|+.|++++|+|.|.-.... . ++.+.+...++.+ +++.++++|.+
T Consensus 124 ~m~~~l~~~-AdlvIsha----GagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~---~~~~L~~~i~~ 195 (224)
T 2jzc_A 124 KMQSIIRDY-SDLVISHA----GTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC---APTETGLIAGL 195 (224)
T ss_dssp SHHHHHHHH-CSCEEESS----CHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE---CSCTTTHHHHH
T ss_pred hHHHHHHhc-CCEEEECC----cHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc---CHHHHHHHHHH
Confidence 5777888 7 99998853 2569999999999999864432 1 3333333345555 34555666654
Q ss_pred H
Q 003987 728 F 728 (781)
Q Consensus 728 ~ 728 (781)
+
T Consensus 196 l 196 (224)
T 2jzc_A 196 R 196 (224)
T ss_dssp H
T ss_pred H
Confidence 4
No 65
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=66.95 E-value=21 Score=42.03 Aligned_cols=65 Identities=9% Similarity=0.054 Sum_probs=42.4
Q ss_pred HHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCcEEEcCc---------cccccccccCCeEEEECCCCHHHHHHHHHH
Q 003987 657 ELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCH---------GGPAEIIEHGASGFHIDPYHPDQAAELMAD 727 (781)
Q Consensus 657 el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVVaT~~---------gG~~EiI~dg~~G~lv~p~d~~~lA~~I~~ 727 (781)
++..++. .+|++|.= ++-++.|++..++|||-... .|.---..+..-|-++. |.+++.++|.+
T Consensus 608 di~~ll~-~aD~lITD-----ySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~pg~~~~--~~~eL~~~i~~ 679 (729)
T 3l7i_A 608 DVSELFL-ISDCLITD-----YSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLPGPIYT--EPYGLAKELKN 679 (729)
T ss_dssp CHHHHHH-TCSEEEES-----SCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSSSCEES--SHHHHHHHHTT
T ss_pred CHHHHHH-HhCEEEee-----chHHHHhHHhhCCCEEEecCCHHHHhhccCCcccChhHhCCCCeEC--CHHHHHHHHhh
Confidence 5667777 59999875 57799999999999998721 11110111122344443 78899888865
Q ss_pred HH
Q 003987 728 FF 729 (781)
Q Consensus 728 ~l 729 (781)
+.
T Consensus 680 ~~ 681 (729)
T 3l7i_A 680 LD 681 (729)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 66
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=66.35 E-value=50 Score=29.40 Aligned_cols=109 Identities=8% Similarity=0.148 Sum_probs=73.0
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH----------ccCcEEEEcC
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA----------DTKGAFVQPA 673 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la----------~aadvfV~PS 673 (781)
.+++||.+.+. ..+.+....++.|....|.... +..+....+. ...|++++=.
T Consensus 5 ~~ILivddd~~-----------~~~~l~~~L~~~g~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~~~dliilD~ 67 (152)
T 3heb_A 5 VTIVMIEDDLG-----------HARLIEKNIRRAGVNNEIIAFT------DGTSALNYLFGDDKSGRVSAGRAQLVLLDL 67 (152)
T ss_dssp CEEEEECCCHH-----------HHHHHHHHHHHTTCCCCEEEES------SHHHHHHHHHCTTSSSGGGTTCBEEEEECS
T ss_pred ceEEEEeCCHH-----------HHHHHHHHHHhCCCcceEEEeC------CHHHHHHHHhccccccccccCCCCEEEEeC
Confidence 57778877643 4567777788877644566654 2456666663 2356777643
Q ss_pred -CCCCCcHHHHHHHHc-----CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 674 -FYEAFGLTVVEAMTC-----GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 674 -~~E~fGltvlEAMa~-----GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
..+.-|+.+++.+.. ++|+|.. .... ..+.+..|..+++..|.+.+++.++|.++.
T Consensus 68 ~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 68 NLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp BCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 345568888887764 6777774 3332 233556788999999999999999987654
No 67
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=65.27 E-value=64 Score=27.74 Aligned_cols=109 Identities=8% Similarity=0.061 Sum_probs=71.2
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc--------cCcEEEEcCC-
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--------TKGAFVQPAF- 674 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~--------aadvfV~PS~- 674 (781)
.+++|+.+.+. ..+.+....++.|....|.... +..+....+.. ..|++++=..
T Consensus 3 ~~ilivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~ 65 (140)
T 1k68_A 3 KKIFLVEDNKA-----------DIRLIQEALANSTVPHEVVTVR------DGMEAMAYLRQEGEYANASRPDLILLXLNL 65 (140)
T ss_dssp CEEEEECCCHH-----------HHHHHHHHHHTCSSCCEEEEEC------SHHHHHHHHTTCGGGGSCCCCSEEEECSSC
T ss_pred CeEEEEeCCHH-----------HHHHHHHHHHhcCCCceEEEEC------CHHHHHHHHHcccccccCCCCcEEEEecCC
Confidence 46677776643 3566777777766533455543 24566676663 4677777543
Q ss_pred CCCCcHHHHHHHH-----cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 675 YEAFGLTVVEAMT-----CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 675 ~E~fGltvlEAMa-----~GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
.+.-|+.+++.+. ..+|+|.- .... ..+....|..|++..|.+.+++.+.|..++
T Consensus 66 ~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 129 (140)
T 1k68_A 66 PKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIE 129 (140)
T ss_dssp SSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHH
Confidence 3445777777765 46787764 3332 234455788999999999999999997766
No 68
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=64.46 E-value=13 Score=37.33 Aligned_cols=23 Identities=4% Similarity=0.069 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEcCC
Q 003987 391 TFTEDVGSEITAELQGFPDFIIGNYS 416 (781)
Q Consensus 391 ~f~~~~~~~i~~~~~~kpDIIh~~~~ 416 (781)
.....+.+.+++. +||+|++++.
T Consensus 82 ~~~~~l~~~ir~~---~P~~V~t~~~ 104 (227)
T 1uan_A 82 EQRLKLAQALRRL---RPRVVFAPLE 104 (227)
T ss_dssp HHHHHHHHHHHHH---CEEEEEEECS
T ss_pred HHHHHHHHHHHHh---CCCEEEeCCC
Confidence 3344555566555 8999998764
No 69
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=63.87 E-value=75 Score=27.77 Aligned_cols=107 Identities=10% Similarity=0.110 Sum_probs=70.3
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc--cCcEEEEcCCC-C-CCc
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPAFY-E-AFG 679 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~~-E-~fG 679 (781)
.+++||.+.+. ....+....++.|. .|.... +..+....+.. ..|++++-... + .-|
T Consensus 6 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g 66 (140)
T 3h5i_A 6 KKILIVEDSKF-----------QAKTIANILNKYGY--TVEIAL------TGEAAVEKVSGGWYPDLILMDIELGEGMDG 66 (140)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTTCCCSEEEEESSCSSSCCH
T ss_pred cEEEEEeCCHH-----------HHHHHHHHHHHcCC--EEEEec------ChHHHHHHHhcCCCCCEEEEeccCCCCCCH
Confidence 57778877643 35667777777653 344332 34566666653 35777775433 3 557
Q ss_pred HHHHHHHH--cCCcEEEc-Ccc---ccccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 680 LTVVEAMT--CGLPTFAT-CHG---GPAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 680 ltvlEAMa--~GlPVVaT-~~g---G~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
+.+++.+. ..+|+|.- ... ...+.+..|..+++..|.+.+++.++|..++
T Consensus 67 ~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 67 VQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp HHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 77776654 47888773 322 2334566788999999999999999998776
No 70
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=59.59 E-value=57 Score=28.64 Aligned_cols=111 Identities=13% Similarity=0.144 Sum_probs=72.4
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++||.+.+. ....+....++.+..-.|.... +..+....+.. ..|++++=. ..+.-|+
T Consensus 5 ~~~ILivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~ 67 (144)
T 3kht_A 5 SKRVLVVEDNPD-----------DIALIRRVLDRKDIHCQLEFVD------NGAKALYQVQQAKYDLIILDIGLPIANGF 67 (144)
T ss_dssp CEEEEEECCCHH-----------HHHHHHHHHHHTTCCEEEEEES------SHHHHHHHHTTCCCSEEEECTTCGGGCHH
T ss_pred CCEEEEEeCCHH-----------HHHHHHHHHHhcCCCeeEEEEC------CHHHHHHHhhcCCCCEEEEeCCCCCCCHH
Confidence 367788877643 3566777777776543344443 24555665543 246666643 3345678
Q ss_pred HHHHHHHc-----CCcEEEc-Cccc---cccccccCCeEEEECCC-CHHHHHHHHHHHHH
Q 003987 681 TVVEAMTC-----GLPTFAT-CHGG---PAEIIEHGASGFHIDPY-HPDQAAELMADFFG 730 (781)
Q Consensus 681 tvlEAMa~-----GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~-d~~~lA~~I~~~l~ 730 (781)
.+++.+.. ++|+|+. .... ..+.+..|..+++..|. +.+++.++|..+++
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 68 EVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp HHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 88888765 6888874 3322 23345678899999999 99999999987763
No 71
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=59.58 E-value=76 Score=27.62 Aligned_cols=110 Identities=11% Similarity=0.146 Sum_probs=72.1
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH-----------ccCcEEEE
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA-----------DTKGAFVQ 671 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la-----------~aadvfV~ 671 (781)
..+++|+.+.+. ....+....++.|....|.... +..+....+. ...|++++
T Consensus 6 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~~~~dlvi~ 68 (149)
T 1k66_A 6 TQPLLVVEDSDE-----------DFSTFQRLLQREGVVNPIYRCI------TGDQALDFLYQTGSYCNPDIAPRPAVILL 68 (149)
T ss_dssp TSCEEEECCCHH-----------HHHHHHHHHHHTTBCSCEEEEC------SHHHHHHHHHTCCSSSCGGGCCCCSEEEE
T ss_pred CccEEEEECCHH-----------HHHHHHHHHHHcCCCceEEEEC------CHHHHHHHHHhcccccCcccCCCCcEEEE
Confidence 356777776643 3566777777776533465543 2456666665 24577776
Q ss_pred cCC-CCCCcHHHHHHHH-----cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 672 PAF-YEAFGLTVVEAMT-----CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 672 PS~-~E~fGltvlEAMa-----~GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
=.. .+.-|+.+++.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++.+.|..++
T Consensus 69 D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 136 (149)
T 1k66_A 69 DLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFI 136 (149)
T ss_dssp CSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 443 3446778888775 45787764 3332 233456788999999999999999997766
No 72
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=57.79 E-value=1.1e+02 Score=32.05 Aligned_cols=148 Identities=11% Similarity=0.012 Sum_probs=89.2
Q ss_pred CEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCC-cEEEeccccC
Q 003987 573 PIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDG-QFRWIAAQTN 651 (781)
Q Consensus 573 ~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~-~V~flG~~~~ 651 (781)
+.++.+..=.+.|.+..|+++.++.+. .+++-..|.|.. . .-....+.+..|+.- +|.|.|
T Consensus 116 ~~~lvv~~ds~~~tl~dL~~~ak~~p~---~~~~g~~g~Gs~----------~-hl~~~~l~~~~Gi~~~~Vpy~G---- 177 (314)
T 2dvz_A 116 ANVVAVNPKFPAKDFKGFLEELKKNPG---KYSYGSSGTCGV----------L-HLMGESFKMATGTDIVHVPYKG---- 177 (314)
T ss_dssp CEEEEECTTSSCSSHHHHHHHHHTSTT---TCEEEESCTTSH----------H-HHHHHHHHHHHTCCCEEEECSS----
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHhCCC---cEEEeCCCCCcH----------H-HHHHHHHHHHhCCCeEEcccCC----
Confidence 345555544578999999988776533 255544443322 0 112233445667642 344443
Q ss_pred cCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCc-EEEc----------Ccc-----ccccccccCCeEEEECC
Q 003987 652 RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLP-TFAT----------CHG-----GPAEIIEHGASGFHIDP 715 (781)
Q Consensus 652 ~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlP-VVaT----------~~g-----G~~EiI~dg~~G~lv~p 715 (781)
..+.+..++....|+.+... -.+.+....|.- +++. +++ |...+....-.|+.++.
T Consensus 178 --~~~a~~al~~G~vD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~ 249 (314)
T 2dvz_A 178 --SGPAVADAVGGQIELIFDNL------PSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPK 249 (314)
T ss_dssp --HHHHHHHHHHTSSSEEEEEH------HHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEET
T ss_pred --HHHHHHHHHcCCceEEEEcH------HHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcC
Confidence 24567777887788887753 255666677742 3332 111 11111112236888998
Q ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003987 716 YHPDQAAELMADFFGKCKENPSHWKKISDGG 746 (781)
Q Consensus 716 ~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a 746 (781)
+.++++.++|.+.+.+...||+..+.+.+.+
T Consensus 250 g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g 280 (314)
T 2dvz_A 250 GTPMDVVNKLRDAAVVALKDPKVIKALDDQG 280 (314)
T ss_dssp TCCHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 8899999999999988889999888876654
No 73
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=57.38 E-value=52 Score=28.61 Aligned_cols=106 Identities=7% Similarity=0.042 Sum_probs=66.4
Q ss_pred CCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCCCCCCcH
Q 003987 602 ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAFYEAFGL 680 (781)
Q Consensus 602 ~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGl 680 (781)
...+++|+.+.+. ..+.+....++.|. .|.... +..+....+.. ..|++++| +.-|+
T Consensus 17 ~~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlvi~~---~~~g~ 74 (137)
T 2pln_A 17 GSMRVLLIEKNSV-----------LGGEIEKGLNVKGF--MADVTE------SLEDGEYLMDIRNYDLVMVS---DKNAL 74 (137)
T ss_dssp TCSEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHHHHHSCCSEEEEC---STTHH
T ss_pred CCCeEEEEeCCHH-----------HHHHHHHHHHHcCc--EEEEeC------CHHHHHHHHHcCCCCEEEEc---CccHH
Confidence 3467788876643 35566666766554 344332 23455555542 35777733 34466
Q ss_pred HHHHHHH--c-CCcEEEc-Cccc---cccccccCCeEEEECCC-CHHHHHHHHHHHH
Q 003987 681 TVVEAMT--C-GLPTFAT-CHGG---PAEIIEHGASGFHIDPY-HPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa--~-GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~-d~~~lA~~I~~~l 729 (781)
.+++.+. . .+|+|.- .... ..+.+..|..+++..|. +.+++.++|..++
T Consensus 75 ~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 131 (137)
T 2pln_A 75 SFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARL 131 (137)
T ss_dssp HHHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHH
Confidence 6666664 3 7888764 3332 33455678899999999 9999999997765
No 74
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=57.26 E-value=67 Score=28.19 Aligned_cols=109 Identities=9% Similarity=0.142 Sum_probs=70.0
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++|+.+.+. ....+....++.|. .|.... +..+....+.. ..|++++=. ..+.-|+
T Consensus 8 ~~~iLivd~~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~ 68 (147)
T 2zay_A 8 WWRIMLVDTQLP-----------ALAASISALSQEGF--DIIQCG------NAIEAVPVAVKTHPHLIITEANMPKISGM 68 (147)
T ss_dssp CEEEEEECTTGG-----------GGHHHHHHHHHHTE--EEEEES------SHHHHHHHHHHHCCSEEEEESCCSSSCHH
T ss_pred CceEEEEeCCHH-----------HHHHHHHHHHHcCC--eEEEeC------CHHHHHHHHHcCCCCEEEEcCCCCCCCHH
Confidence 467888887754 24556666666553 344332 23455555442 357777643 3345678
Q ss_pred HHHHHHHc-----CCcEEE-cCcccc---ccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003987 681 TVVEAMTC-----GLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 681 tvlEAMa~-----GlPVVa-T~~gG~---~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~ 730 (781)
.+++.+.. .+|||+ |..... .+.+..|..+++..|.+.+++..+|..++.
T Consensus 69 ~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 69 DLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp HHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 88888764 678776 443332 234467889999999999999999988774
No 75
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=56.46 E-value=6.1 Score=40.63 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=26.5
Q ss_pred eeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEcc
Q 003987 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 279 mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~ 340 (781)
|||+|....|+.| . .|+++|.++||+|. +++|.
T Consensus 1 MkILVTGatGfIG-----------~--------------~L~~~L~~~G~~V~----~l~R~ 33 (298)
T 4b4o_A 1 MRVLVGGGTGFIG-----------T--------------ALTQLLNARGHEVT----LVSRK 33 (298)
T ss_dssp CEEEEETTTSHHH-----------H--------------HHHHHHHHTTCEEE----EEESS
T ss_pred CEEEEECCCCHHH-----------H--------------HHHHHHHHCCCEEE----EEECC
Confidence 7999988777632 1 67888999999999 88876
No 76
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=54.70 E-value=23 Score=35.93 Aligned_cols=24 Identities=13% Similarity=0.367 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEcCCC
Q 003987 391 TFTEDVGSEITAELQGFPDFIIGNYSD 417 (781)
Q Consensus 391 ~f~~~~~~~i~~~~~~kpDIIh~~~~~ 417 (781)
.....+.+.+++. +||+|++++..
T Consensus 84 ~~~~~l~~~ir~~---~PdvV~t~~~~ 107 (242)
T 2ixd_A 84 EYIREIVKVIRTY---KPKLVFAPYYE 107 (242)
T ss_dssp HHHHHHHHHHHHH---CCSEEEEECSC
T ss_pred HHHHHHHHHHHHc---CCCEEEECCCC
Confidence 3344555556555 89999987643
No 77
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=51.20 E-value=1.2e+02 Score=26.18 Aligned_cols=109 Identities=7% Similarity=0.071 Sum_probs=70.6
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++|+.+.+. ....+....++.|. .|.... +..+..+.+.. ..|++++-. ..+.-|+
T Consensus 6 ~~~iLivdd~~~-----------~~~~l~~~l~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~ 66 (140)
T 3grc_A 6 RPRILICEDDPD-----------IARLLNLMLEKGGF--DSDMVH------SAAQALEQVARRPYAAMTVDLNLPDQDGV 66 (140)
T ss_dssp CSEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEEC------SHHHHHHHHHHSCCSEEEECSCCSSSCHH
T ss_pred CCCEEEEcCCHH-----------HHHHHHHHHHHCCC--eEEEEC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Confidence 357777776643 35566777777654 244433 23455555542 356777644 3455678
Q ss_pred HHHHHHHc-----CCcEEEc-Ccccc---c-cccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003987 681 TVVEAMTC-----GLPTFAT-CHGGP---A-EIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 681 tvlEAMa~-----GlPVVaT-~~gG~---~-EiI~dg~~G~lv~p~d~~~lA~~I~~~l~ 730 (781)
.+++.+.. .+|+|.- ..... . +.+..|..+++..|.+.+++..+|..+++
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 67 SLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp HHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 88887765 7888774 33222 2 45567889999999999999999988774
No 78
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=50.82 E-value=1.7e+02 Score=30.41 Aligned_cols=148 Identities=11% Similarity=0.069 Sum_probs=88.6
Q ss_pred CEEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCC-cEEEeccccC
Q 003987 573 PIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDG-QFRWIAAQTN 651 (781)
Q Consensus 573 ~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~-~V~flG~~~~ 651 (781)
+.++.+..=.+.|.+..|+++.++.+. .+++-..|.|.. . .-....+.+..|+.- +|.|.|
T Consensus 112 ~~~lvv~~ds~~~sl~dL~~~ak~~p~---~~~~g~~g~Gs~----------~-hl~~~~l~~~~Gi~~~~Vpy~G---- 173 (312)
T 2f5x_A 112 PMTIIARGDFPPNNIKELAEYVKKNAD---KISLANAGIGAA----------S-HLCGTMLVEALGVNLLTIPYKG---- 173 (312)
T ss_dssp EEEEEECTTCSCCSHHHHHHHHHHHGG---GCEEEESSTTSH----------H-HHHHHHHHHHHTCCCEEEECSS----
T ss_pred cEEEEEeCCCCCCCHHHHHHHHHhCCC---ceEEeCCCCCcH----------H-HHHHHHHHHHHCCCeEEeccCC----
Confidence 344445444578999999998887654 244444443321 0 112233455667642 334433
Q ss_pred cCChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCc-EEEc----------Ccccccc-----ccccCCeEEEECC
Q 003987 652 RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLP-TFAT----------CHGGPAE-----IIEHGASGFHIDP 715 (781)
Q Consensus 652 ~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlP-VVaT----------~~gG~~E-----iI~dg~~G~lv~p 715 (781)
..+.+..++....|+.+... -++.+.+..|.- +++. +++-..| +....-.|+.++.
T Consensus 174 --~~~a~~aL~~G~VD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~ 245 (312)
T 2f5x_A 174 --TAPAMNDLLGKQVDLMCDQT------TNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPK 245 (312)
T ss_dssp --HHHHHHHHHTTSSCEEEEEH------HHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEET
T ss_pred --hHHHHHHHHcCCccEEEech------HHHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcC
Confidence 24566777777788877652 245666677743 3332 1111111 1111236888888
Q ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003987 716 YHPDQAAELMADFFGKCKENPSHWKKISDGG 746 (781)
Q Consensus 716 ~d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a 746 (781)
+.++++.++|.+.+.+...||+..+.+.+.+
T Consensus 246 g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g 276 (312)
T 2f5x_A 246 GTPKPVVDKLVKSLQAGLADPKFQERMKQLG 276 (312)
T ss_dssp TCCHHHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 8899999999999988889999888776554
No 79
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=50.47 E-value=1.2e+02 Score=26.21 Aligned_cols=107 Identities=8% Similarity=0.076 Sum_probs=70.1
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-------cCcEEEEcCC-C
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-------TKGAFVQPAF-Y 675 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-------aadvfV~PS~-~ 675 (781)
.+++|+.+.+. ..+.+....++.+....|.... +..+....+.. ..|++++=.. .
T Consensus 8 ~~ILivdd~~~-----------~~~~l~~~L~~~g~~~~v~~~~------~~~~a~~~l~~~~~~~~~~~dlii~D~~l~ 70 (143)
T 2qvg_A 8 VDILYLEDDEV-----------DIQSVERVFHKISSLIKIEIAK------SGNQALDMLYGRNKENKIHPKLILLDINIP 70 (143)
T ss_dssp CSEEEECCCHH-----------HHHHHHHHHHHHCTTCCEEEES------SHHHHHHHHHTCTTCCCCCCSEEEEETTCT
T ss_pred CeEEEEeCCHH-----------HHHHHHHHHHHhCCCceEEEEC------CHHHHHHHHHhcccccCCCCCEEEEecCCC
Confidence 56777777643 3566777777776543566554 24566666652 3677776433 3
Q ss_pred CCCcHHHHHHHH-----cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHH
Q 003987 676 EAFGLTVVEAMT-----CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMAD 727 (781)
Q Consensus 676 E~fGltvlEAMa-----~GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~ 727 (781)
+.-|+.+++.+. ..+|+|.. .... ..+....|..+++..|.+.+++.+++..
T Consensus 71 ~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 71 KMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp TSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 445777887775 46787764 3322 3345567889999999999999888754
No 80
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=50.34 E-value=6.7 Score=39.87 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=26.2
Q ss_pred CCceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccC
Q 003987 276 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 276 p~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~ 341 (781)
+|+|||+|... |+. |. .+++.|.++||+|. +++|..
T Consensus 3 ~m~~~ilVtGa-G~i-----------G~--------------~l~~~L~~~g~~V~----~~~r~~ 38 (286)
T 3ius_A 3 AMTGTLLSFGH-GYT-----------AR--------------VLSRALAPQGWRII----GTSRNP 38 (286)
T ss_dssp --CCEEEEETC-CHH-----------HH--------------HHHHHHGGGTCEEE----EEESCG
T ss_pred CCcCcEEEECC-cHH-----------HH--------------HHHHHHHHCCCEEE----EEEcCh
Confidence 57899999976 663 22 67778899999998 887763
No 81
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=47.82 E-value=1.3e+02 Score=25.65 Aligned_cols=108 Identities=14% Similarity=0.268 Sum_probs=69.3
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc--cCcEEEEcC-CCCCCcH
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS-~~E~fGl 680 (781)
.+++||.+.+. ..+.+....++.|.. .|.... +..+....+.. ..|++++=. ..+.-|+
T Consensus 6 ~~iLivdd~~~-----------~~~~l~~~L~~~g~~-~v~~~~------~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~ 67 (129)
T 3h1g_A 6 MKLLVVDDSST-----------MRRIIKNTLSRLGYE-DVLEAE------HGVEAWEKLDANADTKVLITDWNMPEMNGL 67 (129)
T ss_dssp CCEEEECSCHH-----------HHHHHHHHHHHTTCC-CEEEES------SHHHHHHHHHHCTTCCEEEECSCCSSSCHH
T ss_pred cEEEEEeCCHH-----------HHHHHHHHHHHcCCc-EEEEeC------CHHHHHHHHHhCCCCCEEEEeCCCCCCCHH
Confidence 46777776543 356677777777643 244332 23445544432 257777643 3355688
Q ss_pred HHHHHHHc-----CCcEEEc-Ccccc---ccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 681 TVVEAMTC-----GLPTFAT-CHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~-----GlPVVaT-~~gG~---~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
.+++.+.. .+|+|.. ..+.. .+.+..|..+++..|.+++++.++|..++
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 68 DLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 125 (129)
T ss_dssp HHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHh
Confidence 88888754 5788774 43333 34456788999999999999999998776
No 82
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=47.71 E-value=1.4e+02 Score=26.47 Aligned_cols=110 Identities=13% Similarity=0.190 Sum_probs=70.7
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++||.+.+. ....+.+..++.|. .|.... +..+....+.. ..|++++-. ..+.-|+
T Consensus 7 ~~~ILivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlii~D~~l~~~~g~ 67 (154)
T 3gt7_A 7 AGEILIVEDSPT-----------QAEHLKHILEETGY--QTEHVR------NGREAVRFLSLTRPDLIISDVLMPEMDGY 67 (154)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHTTTC--EEEEES------SHHHHHHHHTTCCCSEEEEESCCSSSCHH
T ss_pred CCcEEEEeCCHH-----------HHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Confidence 357788877643 35566666766653 344332 24556666543 246666643 3445678
Q ss_pred HHHHHHH-----cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHHHh
Q 003987 681 TVVEAMT-----CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFFGK 731 (781)
Q Consensus 681 tvlEAMa-----~GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~~ 731 (781)
.+++.+. ..+|+|+. .... ..+.+..|..+++..|.+.+++..+|..++..
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 68 ALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp HHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 8887775 46788764 3332 23445678899999999999999999888753
No 83
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=47.69 E-value=1.1e+02 Score=31.30 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=26.1
Q ss_pred ceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEccCC
Q 003987 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIP 342 (781)
Q Consensus 278 ~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~~p 342 (781)
+|||++....|+.. ..+. .|.+.|++.| +|. |+++...
T Consensus 1 ~M~ILlTNDDGi~a--------------pGi~--------aL~~~l~~~g-~V~----VVAP~~~ 38 (251)
T 2phj_A 1 MPTFLLVNDDGYFS--------------PGIN--------ALREALKSLG-RVV----VVAPDRN 38 (251)
T ss_dssp -CEEEEECSSCTTC--------------HHHH--------HHHHHHTTTS-EEE----EEEESSC
T ss_pred CCEEEEECCCCCCC--------------HHHH--------HHHHHHHhcC-CEE----EEecCCC
Confidence 38999999888732 1244 5566678888 888 8876643
No 84
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=46.53 E-value=1.9e+02 Score=29.30 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=23.1
Q ss_pred cCCCceEEEE--cC-C--------CchHHHHHHHHHcCCcEEEEec
Q 003987 404 LQGFPDFIIG--NY-S--------DGNLVASLLAYKMGITQCTIAH 438 (781)
Q Consensus 404 ~~~kpDIIh~--~~-~--------~~~lva~llar~~gvp~v~t~H 438 (781)
+..+||+|++ |. . .+-..|+.-+..+|+|-+..-.
T Consensus 83 ~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 83 MDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp STTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 3568999994 21 1 1235566777788999887644
No 85
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=46.41 E-value=93 Score=32.28 Aligned_cols=147 Identities=16% Similarity=0.072 Sum_probs=85.5
Q ss_pred EEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCC-cEEEeccccCc
Q 003987 574 IVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDG-QFRWIAAQTNR 652 (781)
Q Consensus 574 iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~-~V~flG~~~~~ 652 (781)
.++.+..=.+.|.+..|+++.++.+. .+++-..|.|.. .+ -....+.+..|+.- +|.+.|
T Consensus 104 ~~lvv~~~s~~~sl~dL~~~ak~~p~---~~~~g~~g~Gs~----------~h-l~~~~l~~~~G~~~~~Vpy~g----- 164 (301)
T 2qpq_A 104 SVFVVPAGSKYKTLGELMAAAKQTNT---QVTYGSCGNGTP----------QH-LAGELLNVSAKTHMVHVPYKG----- 164 (301)
T ss_dssp EEEEEETTCSCCSHHHHHHHTCSSSC---CCEEEESSTTSH----------HH-HHHHHHHHHHTCCCEEEECSS-----
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCC---ceEEecCCCCcH----------HH-HHHHHHHHHhCCCeEEeccCC-----
Confidence 44444444578999999887654322 244444443322 01 12233445567642 344444
Q ss_pred CChHHHHHHHHccCcEEEEcCCCCCCcHHHHHHHHcCCc-EEEc----------Ccccccc-----ccccCCeEEEECCC
Q 003987 653 ARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLP-TFAT----------CHGGPAE-----IIEHGASGFHIDPY 716 (781)
Q Consensus 653 v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlP-VVaT----------~~gG~~E-----iI~dg~~G~lv~p~ 716 (781)
..+.+..++....|+.+... -++.+....|.- +++. +++-..| +....-.|+.++.+
T Consensus 165 -~~~a~~al~~G~vD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g 237 (301)
T 2qpq_A 165 -CGPALNDVLGSQIGLAVVTA------SSAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGA 237 (301)
T ss_dssp -HHHHHHHHHTTSSSCEEEEH------HHHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETT
T ss_pred -hHHHHHHHHCCCccEEEEcH------HHHHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCC
Confidence 24566777777788777652 245666677743 2321 1111111 11122368888888
Q ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003987 717 HPDQAAELMADFFGKCKENPSHWKKISDGG 746 (781)
Q Consensus 717 d~~~lA~~I~~~l~~l~~dp~~~~~~s~~a 746 (781)
.++++.++|.+.+.+...||+..+.+.+.+
T Consensus 238 ~p~~vv~~l~~al~~~~~~~~~~~~~~~~g 267 (301)
T 2qpq_A 238 TPMAVRQKLYDGIAKVMQRDDVQKKLADLG 267 (301)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 899999999999888889999888876654
No 86
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=43.54 E-value=1.7e+02 Score=25.71 Aligned_cols=110 Identities=9% Similarity=0.083 Sum_probs=68.1
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc--------cCcEEEEcCC
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--------TKGAFVQPAF 674 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~--------aadvfV~PS~ 674 (781)
..+++||.+.+. ....+....++.+..-.|.... +..+....+.. ..|++++=..
T Consensus 8 ~~~ILivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~dlillD~~ 70 (149)
T 1i3c_A 8 PKVILLVEDSKA-----------DSRLVQEVLKTSTIDHELIILR------DGLAAMAFLQQQGEYENSPRPNLILLDLN 70 (149)
T ss_dssp CEEEEEECCCHH-----------HHHHHHHHHHSCCSCEEEEEEC------SHHHHHHHHTTCGGGTTCCCCSEEEECSC
T ss_pred CCeEEEEECCHH-----------HHHHHHHHHHhcCCCccEEEeC------CHHHHHHHHHhccccccCCCCCEEEEeCC
Confidence 467778877643 3455666666554322343332 24566666652 3577777433
Q ss_pred -CCCCcHHHHHHHHc-----CCcEEE-cCccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 675 -YEAFGLTVVEAMTC-----GLPTFA-TCHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 675 -~E~fGltvlEAMa~-----GlPVVa-T~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
...-|+.+++.+.. .+|+|. |.... ..+.+..|..|++..|.+.+++.++|..++
T Consensus 71 lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 135 (149)
T 1i3c_A 71 LPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIE 135 (149)
T ss_dssp CSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 23457777777753 567766 43332 234456788999999999999999887654
No 87
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=42.94 E-value=1.6e+02 Score=25.43 Aligned_cols=110 Identities=4% Similarity=-0.035 Sum_probs=68.4
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH------ccCcEEEEcC-CC
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA------DTKGAFVQPA-FY 675 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la------~aadvfV~PS-~~ 675 (781)
..+++||.+.+. ....+..+.++.+....|.... +..+....+. ...|++++-. ..
T Consensus 9 ~~~iLivdd~~~-----------~~~~l~~~l~~~~~~~~v~~~~------~~~~a~~~l~~~~~~~~~~dlvi~D~~l~ 71 (146)
T 3ilh_A 9 IDSVLLIDDDDI-----------VNFLNTTIIRMTHRVEEIQSVT------SGNAAINKLNELYAAGRWPSIICIDINMP 71 (146)
T ss_dssp EEEEEEECSCHH-----------HHHHHHHHHHTTCCEEEEEEES------SHHHHHHHHHHHHTSSCCCSEEEEESSCS
T ss_pred cceEEEEeCCHH-----------HHHHHHHHHHhcCCCeeeeecC------CHHHHHHHHHHhhccCCCCCEEEEcCCCC
Confidence 467778877643 3455666666654322344332 2455666665 2367777744 34
Q ss_pred CCCcHHHHHHHHc-------CCcEEEc-Cccc---cccccccC-CeEEEECCCCHHHHHHHHHHHH
Q 003987 676 EAFGLTVVEAMTC-------GLPTFAT-CHGG---PAEIIEHG-ASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 676 E~fGltvlEAMa~-------GlPVVaT-~~gG---~~EiI~dg-~~G~lv~p~d~~~lA~~I~~~l 729 (781)
+.-|+.+++.+.. .+|+|.. .... ..+....| ..+++..|-+.+++.++|....
T Consensus 72 ~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~ 137 (146)
T 3ilh_A 72 GINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVL 137 (146)
T ss_dssp SSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHH
Confidence 5567778777654 6777664 3332 23344566 8899999999999999998766
No 88
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=42.89 E-value=1.3e+02 Score=26.50 Aligned_cols=110 Identities=8% Similarity=0.042 Sum_probs=64.3
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcHH
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLT 681 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGlt 681 (781)
.+++||.+.+. ..+.+..+.++.+-.-.|.... +..+..+.+.. ..|++++=. ..+.-|+.
T Consensus 21 ~~iLivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~al~~l~~~~~dlii~D~~l~~~~g~~ 83 (150)
T 4e7p_A 21 MKVLVAEDQSM-----------LRDAMCQLLTLQPDVESVLQAK------NGQEAIQLLEKESVDIAILDVEMPVKTGLE 83 (150)
T ss_dssp EEEEEECSCHH-----------HHHHHHHHHHTSTTEEEEEEES------SHHHHHHHHTTSCCSEEEECSSCSSSCHHH
T ss_pred cEEEEEcCCHH-----------HHHHHHHHHHhCCCcEEEEEEC------CHHHHHHHhhccCCCEEEEeCCCCCCcHHH
Confidence 56777766532 2444555555443111222222 23455555542 245666543 34455677
Q ss_pred HHHHHHc---CCcEEEc-Ccc---ccccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003987 682 VVEAMTC---GLPTFAT-CHG---GPAEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 682 vlEAMa~---GlPVVaT-~~g---G~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~ 730 (781)
+++.+.. .+|+|.- ... ...+.+..|..+++..|.+.+++.++|..++.
T Consensus 84 ~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 84 VLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLE 139 (150)
T ss_dssp HHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHc
Confidence 7766543 5777764 332 23445667889999999999999999988763
No 89
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=42.41 E-value=1.6e+02 Score=25.25 Aligned_cols=108 Identities=8% Similarity=0.111 Sum_probs=69.8
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++|+.+.+. ..+.+....++.|. .|.... +..+....+.. ..|++++-. ..+.-|+
T Consensus 7 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~ 67 (142)
T 3cg4_A 7 KGDVMIVDDDAH-----------VRIAVKTILSDAGF--HIISAD------SGGQCIDLLKKGFSGVVLLDIMMPGMDGW 67 (142)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTCCCEEEEEESCCSSSCHH
T ss_pred CCeEEEEcCCHH-----------HHHHHHHHHHHCCe--EEEEeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 467888877643 35667777777654 344432 24566666653 246666643 3345677
Q ss_pred HHHHHHHc-----CCcEEEc-Ccc---ccccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 681 TVVEAMTC-----GLPTFAT-CHG---GPAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~-----GlPVVaT-~~g---G~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
.+++.+.. .+|||.- ... ...+.+..|..+++..|.+.+++.+.|..++
T Consensus 68 ~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 68 DTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp HHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 88887754 5677763 332 3344556788899999999999999998776
No 90
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=42.34 E-value=1.9e+02 Score=25.97 Aligned_cols=110 Identities=11% Similarity=0.222 Sum_probs=68.9
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH-ccCcEEEEcC-CCCCCcH
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA-DTKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fGl 680 (781)
+.+++||=+.+. ..+-+....++.|.. .|.... +-.+..+.+. ..-|+.++=- .-+.-|+
T Consensus 12 ~~rILiVDD~~~-----------~r~~l~~~L~~~G~~-~v~~a~------~g~~al~~~~~~~~DlillD~~MP~mdG~ 73 (134)
T 3to5_A 12 NMKILIVDDFST-----------MRRIVKNLLRDLGFN-NTQEAD------DGLTALPMLKKGDFDFVVTDWNMPGMQGI 73 (134)
T ss_dssp TCCEEEECSCHH-----------HHHHHHHHHHHTTCC-CEEEES------SHHHHHHHHHHHCCSEEEEESCCSSSCHH
T ss_pred CCEEEEEeCCHH-----------HHHHHHHHHHHcCCc-EEEEEC------CHHHHHHHHHhCCCCEEEEcCCCCCCCHH
Confidence 467777766543 355666777777653 243332 1233333333 2356666632 2355688
Q ss_pred HHHHHHH-----cCCcEEE-cCcccccc---ccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003987 681 TVVEAMT-----CGLPTFA-TCHGGPAE---IIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 681 tvlEAMa-----~GlPVVa-T~~gG~~E---iI~dg~~G~lv~p~d~~~lA~~I~~~l~ 730 (781)
.+++.+- ..+|||. |..+...+ ..+.|.++|+..|-+++++.++|.++++
T Consensus 74 el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 74 DLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp HHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 8888774 4688886 55444333 3457899999999999999999987763
No 91
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=41.03 E-value=87 Score=27.45 Aligned_cols=111 Identities=11% Similarity=0.176 Sum_probs=63.8
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH--ccCcEEEEcCC-CCCCc
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA--DTKGAFVQPAF-YEAFG 679 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la--~aadvfV~PS~-~E~fG 679 (781)
..+++||.+.+. ....+..+.++.|- -.|.... + ..+.+..+.. ...|++++=.. .+.-|
T Consensus 20 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~-~~v~~~~--~---~~~~~~~~~~~~~~~dlvi~D~~l~~~~g 82 (146)
T 4dad_A 20 MINILVASEDAS-----------RLAHLARLVGDAGR-YRVTRTV--G---RAAQIVQRTDGLDAFDILMIDGAALDTAE 82 (146)
T ss_dssp GCEEEEECSCHH-----------HHHHHHHHHHHHCS-CEEEEEC--C---CHHHHTTCHHHHTTCSEEEEECTTCCHHH
T ss_pred CCeEEEEeCCHH-----------HHHHHHHHHhhCCC-eEEEEeC--C---HHHHHHHHHhcCCCCCEEEEeCCCCCccH
Confidence 356777766543 34556666666541 1233321 1 1223333332 34677766432 33345
Q ss_pred HHHHHHHHc---CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003987 680 LTVVEAMTC---GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 680 ltvlEAMa~---GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~ 730 (781)
+.+++.+.. .+|||.- .... ..+.+..|..+++..|.+.+++..+|..++.
T Consensus 83 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 83 LAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 666665543 6777764 3332 3345567889999999999999999988764
No 92
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=40.88 E-value=18 Score=35.03 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=23.8
Q ss_pred CceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHH-HHHCCCcee
Q 003987 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLR-IKRQGLDIS 331 (781)
Q Consensus 277 ~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~-L~~~GheV~ 331 (781)
|+|||++|+- .|..+|.... +.+.+++. +.+.|++|+
T Consensus 1 mMmkilii~g-----------S~r~~g~t~~-------la~~i~~~~l~~~g~~v~ 38 (197)
T 2vzf_A 1 MTYSIVAISG-----------SPSRNSTTAK-------LAEYALAHVLARSDSQGR 38 (197)
T ss_dssp CCEEEEEEEC-----------CSSTTCHHHH-------HHHHHHHHHHHHSSEEEE
T ss_pred CCceEEEEEC-----------CCCCCChHHH-------HHHHHHHHHHHHCCCeEE
Confidence 5689999963 2333453333 23356777 788899888
No 93
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=40.27 E-value=1.6e+02 Score=25.88 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=66.7
Q ss_pred CCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH-ccCcEEEEcC-CCCCCc
Q 003987 602 ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA-DTKGAFVQPA-FYEAFG 679 (781)
Q Consensus 602 ~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fG 679 (781)
...+++|+.+.+. ..+.+....++.+....|.... +..+..+.+. ...|++++-. ..+.-|
T Consensus 14 ~~~~iLivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g 76 (152)
T 3eul_A 14 EKVRVVVGDDHPL-----------FREGVVRALSLSGSVNVVGEAD------DGAAALELIKAHLPDVALLDYRMPGMDG 76 (152)
T ss_dssp CCEEEEEECSSHH-----------HHHHHHHHHHHHSSEEEEEEES------SHHHHHHHHHHHCCSEEEEETTCSSSCH
T ss_pred ceEEEEEEcCCHH-----------HHHHHHHHHhhCCCeEEEEEeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 3467777776643 3455666666654211122221 2344444443 2356666643 344557
Q ss_pred HHHHHHHHc---CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003987 680 LTVVEAMTC---GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 680 ltvlEAMa~---GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~ 730 (781)
+.+++.+.. .+|||.. .... ..+.+..|..|++..|.+.+++.++|..++.
T Consensus 77 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 77 AQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp HHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHc
Confidence 777766643 5677763 3332 2345567899999999999999999988773
No 94
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=39.81 E-value=32 Score=35.76 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=25.4
Q ss_pred ceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCcee
Q 003987 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 331 (781)
Q Consensus 278 ~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~ 331 (781)
.|||+||..| |+.++ ...+|.+...+.|.++||+|+
T Consensus 22 ~MKiLII~aH-----------P~~~S-------~n~aL~~~~~~~l~~~G~eV~ 57 (280)
T 4gi5_A 22 SMKVLLIYAH-----------PEPRS-------LNGALKNFAIRHLQQAGHEVQ 57 (280)
T ss_dssp CCEEEEEECC-----------SCTTS-------HHHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEeC-----------CCCcc-------HHHHHHHHHHHHHHHCCCeEE
Confidence 4799999765 33333 234455677888999999998
No 95
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=38.75 E-value=1.4e+02 Score=26.71 Aligned_cols=107 Identities=11% Similarity=0.179 Sum_probs=64.0
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEE-EeccccCcCChHHHHHHHHc---cCcEEEEcC-CCCCC
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR-WIAAQTNRARNGELYRYIAD---TKGAFVQPA-FYEAF 678 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~-flG~~~~~v~~~el~~~la~---aadvfV~PS-~~E~f 678 (781)
.+++|+.+.+. ..+.+....++.|. .+. .. .+..+....+.. ..|++++-. ..+.-
T Consensus 37 ~~Ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~~al~~l~~~~~~~dliilD~~l~~~~ 97 (157)
T 3hzh_A 37 FNVLIVDDSVF-----------TVKQLTQIFTSEGF--NIIDTA------ADGEEAVIKYKNHYPNIDIVTLXITMPKMD 97 (157)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEEE------SSHHHHHHHHHHHGGGCCEEEECSSCSSSC
T ss_pred eEEEEEeCCHH-----------HHHHHHHHHHhCCC--eEEEEE------CCHHHHHHHHHhcCCCCCEEEEeccCCCcc
Confidence 46677766532 34556666666543 232 22 124455555543 136666643 33445
Q ss_pred cHHHHHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 679 GLTVVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 679 GltvlEAMa---~GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
|+.+++.+. ..+|||.. .... ..+.+..|..+++..|.+.+++.++|..++
T Consensus 98 g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 98 GITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 666666553 36788774 3322 334556788999999999999999997654
No 96
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=38.50 E-value=61 Score=31.48 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=19.8
Q ss_pred CCceEEEEcCCCc--hHHHHHHHHH-cCCcEEE
Q 003987 406 GFPDFIIGNYSDG--NLVASLLAYK-MGITQCT 435 (781)
Q Consensus 406 ~kpDIIh~~~~~~--~lva~llar~-~gvp~v~ 435 (781)
.+.|+|++...+. +..+...++. .+.+.++
T Consensus 64 ~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii 96 (218)
T 3l4b_C 64 SKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVV 96 (218)
T ss_dssp CTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEE
T ss_pred ccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEE
Confidence 3789888766554 6667777766 5655544
No 97
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=38.11 E-value=1.9e+02 Score=24.95 Aligned_cols=108 Identities=10% Similarity=0.152 Sum_probs=66.2
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCC-CCCCcH
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAF-YEAFGL 680 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGl 680 (781)
..+++|+.+.+. ..+.+....++.|. .|.... +..+....+.. ..|++++-.. ...-|+
T Consensus 4 ~~~Ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvllD~~l~~~~g~ 64 (136)
T 2qzj_A 4 QTKILIIDGDKD-----------NCQKLKGFLEEKGI--SIDLAY------NCEEAIGKIFSNKYDLIFLEIILSDGDGW 64 (136)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHTTTC--EEEEES------SHHHHHHHHHHCCCSEEEEESEETTEEHH
T ss_pred CCeEEEEcCCHH-----------HHHHHHHHHHHCCC--EEEEEC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 357777777643 34556666665543 344332 23455555542 2577766432 233567
Q ss_pred HHHHHHHc--CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 681 TVVEAMTC--GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~--GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
.+++.+.. .+|+|.- .... ..+.+..|..|++..|.+.+++.++|..++
T Consensus 65 ~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 119 (136)
T 2qzj_A 65 TLCKKIRNVTTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAIL 119 (136)
T ss_dssp HHHHHHHTTCCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 77777653 5777764 3332 334556788999999999999999997766
No 98
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=38.08 E-value=2.1e+02 Score=25.13 Aligned_cols=106 Identities=8% Similarity=0.050 Sum_probs=65.1
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHcc-C-cEEEEcC-CCCCCcH
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADT-K-GAFVQPA-FYEAFGL 680 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~a-a-dvfV~PS-~~E~fGl 680 (781)
.+++||.+.+. ..+.+....+. + -.|.... +..+....+... . |++++-. ..+.-|+
T Consensus 5 ~~ILivdd~~~-----------~~~~l~~~L~~-~--~~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~ 64 (151)
T 3kcn_A 5 ERILLVDDDYS-----------LLNTLKRNLSF-D--FEVTTCE------SGPEALACIKKSDPFSVIMVDMRMPGMEGT 64 (151)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHTT-T--SEEEEES------SHHHHHHHHHHSCCCSEEEEESCCSSSCHH
T ss_pred CeEEEEeCCHH-----------HHHHHHHHhcc-C--ceEEEeC------CHHHHHHHHHcCCCCCEEEEeCCCCCCcHH
Confidence 56778877643 23344444432 2 2344332 345666666643 2 7777643 3455677
Q ss_pred HHHHHHH---cCCcEEEc-Cccc---cccccccC-CeEEEECCCCHHHHHHHHHHHH
Q 003987 681 TVVEAMT---CGLPTFAT-CHGG---PAEIIEHG-ASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa---~GlPVVaT-~~gG---~~EiI~dg-~~G~lv~p~d~~~lA~~I~~~l 729 (781)
.+++.+. ..+|+|.. .... ..+.+..| ..+++..|.+.+++.++|..++
T Consensus 65 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l 121 (151)
T 3kcn_A 65 EVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGI 121 (151)
T ss_dssp HHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHH
Confidence 7776654 46777763 3332 33445567 7899999999999999998877
No 99
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=37.67 E-value=3.4e+02 Score=27.49 Aligned_cols=114 Identities=18% Similarity=0.110 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhhccCCCe-EEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHcc
Q 003987 587 MTGLVECYGKNSQLRELV-NLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADT 665 (781)
Q Consensus 587 l~~LieA~~~l~~~~~~v-~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~a 665 (781)
+..-++.+.++. |+. ++.++++... .......+.+++.++++|+. +......+ .-...+...-+...
T Consensus 126 ~~~~l~l~~~l~---P~~k~vgvi~~~~~------~~s~~~~~~~~~~~~~~g~~--~v~~~~~~-~~~~~~~~~~l~~~ 193 (302)
T 3lkv_A 126 VEQHVELIKEIL---PNVKSIGVVYNPGE------ANAVSLMELLKLSAAKHGIK--LVEATALK-SADVQSATQAIAEK 193 (302)
T ss_dssp HHHHHHHHHHHS---TTCCEEEEEECTTC------HHHHHHHHHHHHHHHHTTCE--EEEEECSS-GGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC---CCCCEEEEEeCCCc------ccHHHHHHHHHHHHHHcCCE--EEEEecCC-hHHHHHHHHhccCC
Confidence 455556655543 333 5656665433 12234566788888888863 44443222 22233344444445
Q ss_pred CcEEEEcCC---CCCCcHHHHHHHHcCCcEEEcCccccccccccCCe-EEEECCC
Q 003987 666 KGAFVQPAF---YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGAS-GFHIDPY 716 (781)
Q Consensus 666 advfV~PS~---~E~fGltvlEAMa~GlPVVaT~~gG~~EiI~dg~~-G~lv~p~ 716 (781)
.|++..|.- ..+......-+..+++||++... ..+.+|.. |+.+++.
T Consensus 194 ~d~i~~~~d~~~~~~~~~i~~~~~~~~iPv~~~~~----~~v~~G~l~~~~~~~~ 244 (302)
T 3lkv_A 194 SDVIYALIDNTVASAIEGMIVAANQAKTPVFGAAT----SYVERGAIASLGFDYY 244 (302)
T ss_dssp CSEEEECSCHHHHHTHHHHHHHHHHTTCCEEESSH----HHHHTTCSEEEECCHH
T ss_pred eeEEEEeCCcchhhHHHHHHHHHhhcCCceeeccc----ccccCCceEEEecCHH
Confidence 788877753 12223334556789999998753 33445544 4444443
No 100
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=36.55 E-value=2.1e+02 Score=24.64 Aligned_cols=75 Identities=8% Similarity=0.115 Sum_probs=45.8
Q ss_pred hHHHHHHHHc-cCcEEEEcC-CCCCCcHHHHHHHH-----cCCcEEEc-Ccc---ccccccccCCeEEEECCCCHHHHHH
Q 003987 655 NGELYRYIAD-TKGAFVQPA-FYEAFGLTVVEAMT-----CGLPTFAT-CHG---GPAEIIEHGASGFHIDPYHPDQAAE 723 (781)
Q Consensus 655 ~~el~~~la~-aadvfV~PS-~~E~fGltvlEAMa-----~GlPVVaT-~~g---G~~EiI~dg~~G~lv~p~d~~~lA~ 723 (781)
..+....+.. ..|++++-. ..+.-|+.+++.+. ..+|+|.. ... ...+.+..|..+++..|.+.+++.+
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~ 114 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLS 114 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHH
Confidence 3455554432 356666643 33445666666665 56788764 322 3344556788999999999999999
Q ss_pred HHHHHH
Q 003987 724 LMADFF 729 (781)
Q Consensus 724 ~I~~~l 729 (781)
+|..++
T Consensus 115 ~i~~~~ 120 (140)
T 3n53_A 115 RIEIHL 120 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998776
No 101
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=35.39 E-value=1.2e+02 Score=24.84 Aligned_cols=105 Identities=8% Similarity=0.092 Sum_probs=64.3
Q ss_pred EEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcHHH
Q 003987 605 NLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLTV 682 (781)
Q Consensus 605 ~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGltv 682 (781)
+++|+.+.+. ..+.+....++.|. +|.... +..+....+.. ..|++++-. ..+.-|..+
T Consensus 3 ~iliv~~~~~-----------~~~~l~~~l~~~g~--~v~~~~------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~ 63 (119)
T 2j48_A 3 HILLLEEEDE-----------AATVVCEMLTAAGF--KVIWLV------DGSTALDQLDLLQPIVILMAWPPPDQSCLLL 63 (119)
T ss_dssp EEEEECCCHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHH
T ss_pred EEEEEeCCHH-----------HHHHHHHHHHhCCc--EEEEec------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 5666766532 34566666666654 354432 23444444442 356666643 334457777
Q ss_pred HHHHH-----cCCcEEEc-CccccccccccCCeEEEECCCCHHHHHHHHHHH
Q 003987 683 VEAMT-----CGLPTFAT-CHGGPAEIIEHGASGFHIDPYHPDQAAELMADF 728 (781)
Q Consensus 683 lEAMa-----~GlPVVaT-~~gG~~EiI~dg~~G~lv~p~d~~~lA~~I~~~ 728 (781)
++.+. ..+|+|+. ......+....|..+++..|.+.+++.+.|..+
T Consensus 64 ~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 64 LQHLREHQADPHPPLVLFLGEPPVDPLLTAQASAILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp HHHHHHTCCCSSCCCEEEESSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTT
T ss_pred HHHHHhccccCCCCEEEEeCCCCchhhhhcCHHHhccCCCCHHHHHHHHHHH
Confidence 87775 46787763 333222566678889999999999999888654
No 102
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=35.32 E-value=1.7e+02 Score=25.02 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=65.3
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCC-C-----C
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAF-Y-----E 676 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~-----E 676 (781)
.+++|+.+.+. ....+....++.|. .|.... +..+....+.. ..|++++-.. . +
T Consensus 4 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~ 64 (140)
T 2qr3_A 4 GTIIIVDDNKG-----------VLTAVQLLLKNHFS--KVITLS------SPVSLSTVLREENPEVVLLDMNFTSGINNG 64 (140)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHTTTSS--EEEEEC------CHHHHHHHHHHSCEEEEEEETTTTC-----
T ss_pred ceEEEEeCCHH-----------HHHHHHHHHHhCCc--EEEEeC------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCC
Confidence 56777776643 34556666655543 344332 24455555553 2466666432 2 4
Q ss_pred CCcHHHHHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 677 AFGLTVVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 677 ~fGltvlEAMa---~GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
.-|+.+++.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++.++|..++
T Consensus 65 ~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 65 NEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHH
Confidence 45666666654 47888774 3222 234456788999999999999999998776
No 103
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=35.18 E-value=21 Score=36.64 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=26.1
Q ss_pred CceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEcc
Q 003987 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 277 ~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~ 340 (781)
|.|||+|....|+. |. .|++.|.++|++|. ++++.
T Consensus 1 M~~~vlVtGatG~i-----------G~--------------~l~~~L~~~g~~V~----~~~r~ 35 (311)
T 3m2p_A 1 MSLKIAVTGGTGFL-----------GQ--------------YVVESIKNDGNTPI----ILTRS 35 (311)
T ss_dssp -CCEEEEETTTSHH-----------HH--------------HHHHHHHHTTCEEE----EEESC
T ss_pred CCCEEEEECCCcHH-----------HH--------------HHHHHHHhCCCEEE----EEeCC
Confidence 66899988766652 21 56778899999998 88887
No 104
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=35.11 E-value=1.7e+02 Score=26.96 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=20.2
Q ss_pred CCCceEEEEcCCCchHHHHHHHHHcCCcEEEEe
Q 003987 405 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIA 437 (781)
Q Consensus 405 ~~kpDIIh~~~~~~~lva~llar~~gvp~v~t~ 437 (781)
..++-+|+++ +.|+.+|..++.+.........
T Consensus 60 ~~~~i~l~G~-SmGG~~a~~~a~~~~~~~~~~~ 91 (202)
T 4fle_A 60 AGQSIGIVGS-SLGGYFATWLSQRFSIPAVVVN 91 (202)
T ss_dssp TTSCEEEEEE-THHHHHHHHHHHHTTCCEEEES
T ss_pred CCCcEEEEEE-ChhhHHHHHHHHHhcccchhee
Confidence 3445455555 5667778888877776655443
No 105
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=34.80 E-value=2.2e+02 Score=24.48 Aligned_cols=107 Identities=9% Similarity=0.156 Sum_probs=69.4
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH---ccCcEEEEcC-CCCCCc
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA---DTKGAFVQPA-FYEAFG 679 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la---~aadvfV~PS-~~E~fG 679 (781)
.+++|+.+.+. ..+.+....++.|. .|.... ...+....+. ...|++++-. ..+.-|
T Consensus 4 ~~ilivdd~~~-----------~~~~l~~~l~~~g~--~v~~~~------~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g 64 (143)
T 3jte_A 4 AKILVIDDEST-----------ILQNIKFLLEIDGN--EVLTAS------SSTEGLRIFTENCNSIDVVITDMKMPKLSG 64 (143)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHTTTTCCEEEEESCCSSSCH
T ss_pred CEEEEEcCCHH-----------HHHHHHHHHHhCCc--eEEEeC------CHHHHHHHHHhCCCCCCEEEEeCCCCCCcH
Confidence 56777776643 35667777777653 344332 2455666665 2367776643 345567
Q ss_pred HHHHHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 680 LTVVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 680 ltvlEAMa---~GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
+.+++.+. ..+|+|.- .... ..+.+..|..+++..|.+.+++..+|..++
T Consensus 65 ~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 65 MDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp HHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHH
Confidence 77766654 36787764 3333 334566788999999999999999998776
No 106
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=34.21 E-value=2.2e+02 Score=24.27 Aligned_cols=108 Identities=11% Similarity=0.116 Sum_probs=67.8
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEE-eccccCcCChHHHHHHHHc-cCcEEEEcCCC--CCC
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRW-IAAQTNRARNGELYRYIAD-TKGAFVQPAFY--EAF 678 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~f-lG~~~~~v~~~el~~~la~-aadvfV~PS~~--E~f 678 (781)
..+++|+.+.+. ..+.+....++.|. .+.. .. +..+....+.. ..|++++-... +.-
T Consensus 9 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~~------~~~~a~~~~~~~~~dlii~d~~~~~~~~ 69 (140)
T 3cg0_A 9 LPGVLIVEDGRL-----------AAATLRIQLESLGY--DVLGVFD------NGEEAVRCAPDLRPDIALVDIMLCGALD 69 (140)
T ss_dssp CCEEEEECCBHH-----------HHHHHHHHHHHHTC--EEEEEES------SHHHHHHHHHHHCCSEEEEESSCCSSSC
T ss_pred CceEEEEECCHH-----------HHHHHHHHHHHCCC--eeEEEEC------CHHHHHHHHHhCCCCEEEEecCCCCCCC
Confidence 467888887643 35566666666654 2442 22 23455555442 35777765433 345
Q ss_pred cHHHHHHHH--cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 679 GLTVVEAMT--CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 679 GltvlEAMa--~GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
|+.+++.+. ..+|+|.- .... ..+.+..|..+++..|.+.+++...|..++
T Consensus 70 g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 70 GVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAI 126 (140)
T ss_dssp HHHHHHHHHHHSCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 666666554 57888874 3333 234556788999999999999999997766
No 107
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=33.85 E-value=1.1e+02 Score=31.81 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=15.3
Q ss_pred HHHHHHHHC-CCceeecceEEEccC
Q 003987 318 EMLLRIKRQ-GLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~-GheV~~~v~VvT~~~ 341 (781)
.|+++|.++ ||+|. ++++..
T Consensus 39 ~l~~~L~~~~g~~V~----~~~r~~ 59 (372)
T 3slg_A 39 HLSKRILETTDWEVF----GMDMQT 59 (372)
T ss_dssp HHHHHHHHHSSCEEE----EEESCC
T ss_pred HHHHHHHhCCCCEEE----EEeCCh
Confidence 566777777 99998 888763
No 108
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=33.03 E-value=41 Score=33.00 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=23.3
Q ss_pred CceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHC--CCcee
Q 003987 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQ--GLDIS 331 (781)
Q Consensus 277 ~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~--GheV~ 331 (781)
|||||++|+-|--| ..+|.. ++|.+.+++.+.++ |++|+
T Consensus 3 mM~kiLiI~gSpr~---------~~~S~s-------~~l~~~~~~~~~~~~~g~ev~ 43 (211)
T 3p0r_A 3 AMTKVLFVKANNRP---------AEQAVS-------VKLYEAFLASYKEAHPNDTVV 43 (211)
T ss_dssp -CCEEEEEECCCSC---------TTTCHH-------HHHHHHHHHHHHHHCTTSEEE
T ss_pred ccCEEEEEEeCCCC---------CCCCHH-------HHHHHHHHHHHHHhCCCCeEE
Confidence 67999999743221 133422 33344666778777 89988
No 109
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=32.73 E-value=2.2e+02 Score=29.16 Aligned_cols=14 Identities=0% Similarity=-0.109 Sum_probs=10.8
Q ss_pred HHHHHHHHCCCcee
Q 003987 318 EMLLRIKRQGLDIS 331 (781)
Q Consensus 318 eLa~~L~~~GheV~ 331 (781)
.|+++|.++|+++.
T Consensus 39 ~l~~~L~~~g~~~~ 52 (346)
T 4egb_A 39 NFVHYMLQSYETYK 52 (346)
T ss_dssp HHHHHHHHHCTTEE
T ss_pred HHHHHHHhhCCCcE
Confidence 56678899997666
No 110
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=32.04 E-value=2.4e+02 Score=24.01 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=69.7
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHcc--CcEEEEcC-CCCCCc
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADT--KGAFVQPA-FYEAFG 679 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~a--advfV~PS-~~E~fG 679 (781)
..+++|+.+.+. ..+.+....++.|. .|.... +..+....+... .|++++=. ..+.-|
T Consensus 7 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g 67 (136)
T 3hdv_A 7 RPLVLVVDDNAV-----------NREALILYLKSRGI--DAVGAD------GAEEARLYLHYQKRIGLMITDLRMQPESG 67 (136)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHHTTC--CEEEES------SHHHHHHHHHHCTTEEEEEECSCCSSSCH
T ss_pred CCeEEEECCCHH-----------HHHHHHHHHHHcCc--eEEEeC------CHHHHHHHHHhCCCCcEEEEeccCCCCCH
Confidence 357788877643 35667777777664 344432 234555555432 46666643 345567
Q ss_pred HHHHHHHHc----CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 680 LTVVEAMTC----GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 680 ltvlEAMa~----GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
+.+++.+.. .+|+|.. .... ..+.+..|..+++..|.+.+++.++|.++.
T Consensus 68 ~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (136)
T 3hdv_A 68 LDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKEL 125 (136)
T ss_dssp HHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHh
Confidence 888887754 4677764 3332 334556788999999999999999998776
No 111
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=31.89 E-value=2.4e+02 Score=24.04 Aligned_cols=110 Identities=6% Similarity=0.102 Sum_probs=69.1
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHH-cCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCC-CCCCc
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKT-YKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAF-YEAFG 679 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~e-lgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fG 679 (781)
..+++|+.+.+. ....+....++ .|.. .|.... +..+....+.. ..|++++-.. .+.-|
T Consensus 8 ~~~iLivdd~~~-----------~~~~l~~~L~~~~~~~-~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g 69 (143)
T 3cnb_A 8 DFSILIIEDDKE-----------FADMLTQFLENLFPYA-KIKIAY------NPFDAGDLLHTVKPDVVMLDLMMVGMDG 69 (143)
T ss_dssp -CEEEEECSCHH-----------HHHHHHHHHHHHCTTC-EEEEEC------SHHHHHHHHHHTCCSEEEEETTCTTSCH
T ss_pred CceEEEEECCHH-----------HHHHHHHHHHhccCcc-EEEEEC------CHHHHHHHHHhcCCCEEEEecccCCCcH
Confidence 467788877643 35566666666 5542 144443 23455555442 3577766443 34457
Q ss_pred HHHHHHHHc-----CCcEEE-cCcccc---ccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003987 680 LTVVEAMTC-----GLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 680 ltvlEAMa~-----GlPVVa-T~~gG~---~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~ 730 (781)
+.+++.+.. .+|+|+ |..... .+.+..|..+++..|.+.+++.++|..++.
T Consensus 70 ~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 70 FSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVE 129 (143)
T ss_dssp HHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 778877754 578776 333332 345567889999999999999999987764
No 112
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=31.41 E-value=29 Score=36.01 Aligned_cols=52 Identities=8% Similarity=-0.070 Sum_probs=31.1
Q ss_pred HhhcCCCcccHhhhhcCCCCceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCcee
Q 003987 258 DILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 331 (781)
Q Consensus 258 ~~~~~p~~~~~~~f~~r~p~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~ 331 (781)
+.+..|+...|.. ..++|||++|+- .|..+|.... |.+.+++.+.+.|++|+
T Consensus 42 ~~~~~~~~~~~~~----~~~~mKILiI~G-----------S~R~~S~T~~-------La~~~~~~l~~~G~eve 93 (279)
T 2fzv_A 42 SFAIERPALGLAP----DAPPVRILLLYG-----------SLRARSFSRL-------AVEEAARLLQFFGAETR 93 (279)
T ss_dssp TTCCSCTTTTTSC----CCSCCEEEEEES-----------CCSSSCHHHH-------HHHHHHHHHHHTTCEEE
T ss_pred HHcCCCChhhccC----CCCCCEEEEEEe-----------CCCCCCHHHH-------HHHHHHHHHhhCCCEEE
Confidence 3455555555532 145689999972 3444554333 33356677788899998
No 113
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=31.03 E-value=2.4e+02 Score=23.72 Aligned_cols=107 Identities=8% Similarity=0.092 Sum_probs=65.2
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc--cCcEEEEcCC-CC-CC
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPAF-YE-AF 678 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~-~E-~f 678 (781)
..+++|+.+.+. ..+.+....++.|. +|.... +..+....+.. ..|++++-.. .+ .-
T Consensus 5 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~~ 65 (132)
T 2rdm_A 5 AVTILLADDEAI-----------LLLDFESTLTDAGF--LVTAVS------SGAKAIEMLKSGAAIDGVVTDIRFCQPPD 65 (132)
T ss_dssp SCEEEEECSSHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTTCCCCEEEEESCCSSSSC
T ss_pred CceEEEEcCcHH-----------HHHHHHHHHHHcCC--EEEEEC------CHHHHHHHHHcCCCCCEEEEeeeCCCCCC
Confidence 357788877643 34566666666554 344332 24566666664 2577776433 33 45
Q ss_pred cHHHHHHHH---cCCcEEEc-Cccccc---cccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003987 679 GLTVVEAMT---CGLPTFAT-CHGGPA---EIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 679 GltvlEAMa---~GlPVVaT-~~gG~~---EiI~dg~~G~lv~p~d~~~lA~~I~~~l~ 730 (781)
|+.+++.+. ..+|+|.. ...... +.+.. .|++..|.+.+++.++|.+++.
T Consensus 66 g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~--~~~l~kP~~~~~l~~~i~~~~~ 122 (132)
T 2rdm_A 66 GWQVARVAREIDPNMPIVYISGHAALEWASNGVPD--SIILEKPFTSAQLITAVSQLLN 122 (132)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTT--CEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCC--cceEeCCCCHHHHHHHHHHHHh
Confidence 777776664 36888764 333222 22222 3799999999999999987763
No 114
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=30.70 E-value=41 Score=34.14 Aligned_cols=37 Identities=16% Similarity=0.034 Sum_probs=23.5
Q ss_pred CceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCcee
Q 003987 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 331 (781)
Q Consensus 277 ~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~ 331 (781)
++|||++|+- .|..+|.... |.+.+++.+.+.|++|+
T Consensus 33 ~~mkIliI~G-----------S~r~~s~t~~-------La~~~~~~l~~~g~eve 69 (247)
T 2q62_A 33 HRPRILILYG-----------SLRTVSYSRL-------LAEEARRLLEFFGAEVK 69 (247)
T ss_dssp SCCEEEEEEC-----------CCCSSCHHHH-------HHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEEEc-----------cCCCCCHHHH-------HHHHHHHHHhhCCCEEE
Confidence 4589999973 2344443322 33356667778899988
No 115
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=30.64 E-value=58 Score=33.34 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=24.7
Q ss_pred CceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCcee
Q 003987 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 331 (781)
Q Consensus 277 ~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~ 331 (781)
|+|||++|..| |..+| ..++|.+.+++.+.+.|++|+
T Consensus 1 ~MmkiLiI~gS-----------pr~~s-------~t~~la~~~~~~l~~~g~eV~ 37 (273)
T 1d4a_A 1 VGRRALIVLAH-----------SERTS-------FNYAMKEAAAAALKKKGWEVV 37 (273)
T ss_dssp CCCEEEEEECC-----------SCTTS-------HHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEEEeC-----------CCCcc-------HHHHHHHHHHHHHHhCCCeEE
Confidence 35899999744 33233 233444567778888999998
No 116
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=29.93 E-value=30 Score=33.10 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=15.7
Q ss_pred HHHHHHHHCCCceeecceEEEcc
Q 003987 318 EMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~~ 340 (781)
.+++.|.++|++|. +++|.
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~ 33 (221)
T 3ew7_A 15 RILEEAKNRGHEVT----AIVRN 33 (221)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHhCCCEEE----EEEcC
Confidence 56678899999998 88876
No 117
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=29.64 E-value=2.4e+02 Score=28.50 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=22.7
Q ss_pred CCCceEEEE--cC-C--------CchHHHHHHHHHcCCcEEEEec
Q 003987 405 QGFPDFIIG--NY-S--------DGNLVASLLAYKMGITQCTIAH 438 (781)
Q Consensus 405 ~~kpDIIh~--~~-~--------~~~lva~llar~~gvp~v~t~H 438 (781)
..+||+|++ |. . .+-..|+.-+..+|+|-+..-.
T Consensus 85 ~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 129 (244)
T 2e6c_A 85 FGPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSV 129 (244)
T ss_dssp SCSCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEECCccCCCCCcCeechHhHHHHHHHHhcCCCeEEEec
Confidence 568999994 21 1 1235566777788999887644
No 118
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=29.18 E-value=2.4e+02 Score=24.67 Aligned_cols=110 Identities=10% Similarity=0.013 Sum_probs=66.3
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHc-CCCCcEEEeccccCcCChHHHHHHHHc--cCcEEEEcCC-CCCC
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTY-KLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPAF-YEAF 678 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~el-gL~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~-~E~f 678 (781)
..+++|+.+.+. ....+....++. |. ..|.... +..+....+.. ..|++++-.. .+.-
T Consensus 3 ~~~iLivdd~~~-----------~~~~l~~~L~~~~g~-~~v~~~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~ 64 (154)
T 2qsj_A 3 LTVVLIVDDHHL-----------IRAGAKNLLEGAFSG-MRVEGAE------TVSDALAFLEADNTVDLILLDVNLPDAE 64 (154)
T ss_dssp CEEEEEECSCHH-----------HHHHHHHHHHHHCTT-EEEEEES------SHHHHHHHHHTTCCCSEEEECC------
T ss_pred ccEEEEEcCCHH-----------HHHHHHHHHHhCCCc-eEEEEec------CHHHHHHHHhccCCCCEEEEeCCCCCCc
Confidence 357778876643 355666666665 32 1243332 24566666653 3577777543 2345
Q ss_pred cHHHHHHHH---cCCcEEEc-Ccc---ccccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003987 679 GLTVVEAMT---CGLPTFAT-CHG---GPAEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 679 GltvlEAMa---~GlPVVaT-~~g---G~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~ 730 (781)
|+.+++.+. .++|+|.. ... ...+.+..|..|++..|.+.+++.++|..++.
T Consensus 65 g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~ 123 (154)
T 2qsj_A 65 AIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILE 123 (154)
T ss_dssp CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHc
Confidence 777776664 36888874 322 22344567889999999999999999987763
No 119
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=28.38 E-value=33 Score=33.00 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=15.7
Q ss_pred HHHHHHHHCCCceeecceEEEcc
Q 003987 318 EMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~~ 340 (781)
.++++|.++|++|. +++|.
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~ 33 (224)
T 3h2s_A 15 AIVAEARRRGHEVL----AVVRD 33 (224)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHHCCCEEE----EEEec
Confidence 56678899999998 88776
No 120
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=28.36 E-value=2.7e+02 Score=23.45 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=66.6
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHH-ccCcEEEEcC-CCCCCcH
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA-DTKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fGl 680 (781)
..+++|+.+.+. ....+....++.|. .|.... +..+....+. ...|++++-. ..+.-|+
T Consensus 6 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~ 66 (132)
T 3lte_A 6 SKRILVVDDDQA-----------MAAAIERVLKRDHW--QVEIAH------NGFDAGIKLSTFEPAIMTLDLSMPKLDGL 66 (132)
T ss_dssp -CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHTCCSEEEEESCBTTBCHH
T ss_pred CccEEEEECCHH-----------HHHHHHHHHHHCCc--EEEEeC------CHHHHHHHHHhcCCCEEEEecCCCCCCHH
Confidence 356777776543 34566666666553 344432 2345555443 2356666643 3455678
Q ss_pred HHHHHHHc-----CCcEEEcCccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 681 TVVEAMTC-----GLPTFATCHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~-----GlPVVaT~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
.+++.+.. ..|++.+.... ..+.+..|..+++..|.+.+++.++|....
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (132)
T 3lte_A 67 DVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLV 123 (132)
T ss_dssp HHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHc
Confidence 88887753 34555553222 234456788999999999999999997765
No 121
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=28.33 E-value=2.6e+02 Score=23.76 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=68.0
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcH
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 680 (781)
..+++|+.+.+. ..+.+.+..++.+. .|.... +..+....+.. ..|++++-. ..+.-|+
T Consensus 7 ~~~ilivdd~~~-----------~~~~l~~~L~~~~~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~ 67 (137)
T 3hdg_A 7 ALKILIVEDDTD-----------AREWLSTIISNHFP--EVWSAG------DGEEGERLFGLHAPDVIITDIRMPKLGGL 67 (137)
T ss_dssp CCCEEEECSCHH-----------HHHHHHHHHHTTCS--CEEEES------SHHHHHHHHHHHCCSEEEECSSCSSSCHH
T ss_pred ccEEEEEeCCHH-----------HHHHHHHHHHhcCc--EEEEEC------CHHHHHHHHhccCCCEEEEeCCCCCCCHH
Confidence 357788877643 34556666665332 354443 23455554442 357777654 3455677
Q ss_pred HHHHHHHc---CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 681 TVVEAMTC---GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~---GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
.+++.+.. .+|+|.. .... ..+.+..|..+++..|.+.+++.++|.+++
T Consensus 68 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (137)
T 3hdg_A 68 EMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFR 123 (137)
T ss_dssp HHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 77776653 6788774 3322 234556788999999999999999998876
No 122
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=27.97 E-value=57 Score=31.36 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHC-CCceeecceEEEccC
Q 003987 308 ILDQVRALENEMLLRIKRQ-GLDISPKILIVTRLI 341 (781)
Q Consensus 308 vld~araL~~eLa~~L~~~-GheV~~~v~VvT~~~ 341 (781)
=.+....+...|.+.|.+. |++| ++||..
T Consensus 26 Ek~~~l~ia~~l~~~L~~~~G~~V-----~ltR~~ 55 (179)
T 1jwq_A 26 EKTFNLAMALKVESILKQNPKLEV-----VLTRSD 55 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEE-----EESCSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEE-----EEeCCC
Confidence 4455666677889999999 9988 577763
No 123
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=27.78 E-value=1.7e+02 Score=25.14 Aligned_cols=107 Identities=14% Similarity=0.238 Sum_probs=68.1
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHH-cCCCCcEEEeccccCcCChHHHHHHHHc--cCcEEEEcCCC--CCC
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKT-YKLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPAFY--EAF 678 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~e-lgL~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~~--E~f 678 (781)
.+++||.+.+. ....+..+.++ .|. .|.... +..+....+.. ..|++++-... +.-
T Consensus 5 ~~ilivdd~~~-----------~~~~l~~~L~~~~~~--~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~ 65 (140)
T 3lua_A 5 GTVLLIDYFEY-----------EREKTKIIFDNIGEY--DFIEVE------NLKKFYSIFKDLDSITLIIMDIAFPVEKE 65 (140)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHHCCC--EEEEEC------SHHHHHTTTTTCCCCSEEEECSCSSSHHH
T ss_pred CeEEEEeCCHH-----------HHHHHHHHHHhccCc--cEEEEC------CHHHHHHHHhcCCCCcEEEEeCCCCCCCc
Confidence 56777776643 35566667766 544 344332 23455555542 35777775433 334
Q ss_pred cHHHHHHHHc-----CCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 679 GLTVVEAMTC-----GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 679 GltvlEAMa~-----GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
|+.+++.+.. .+|||.. .... ..+.+..|..+++..|.+.+++.++|..++
T Consensus 66 g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (140)
T 3lua_A 66 GLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVL 125 (140)
T ss_dssp HHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 6677766554 7888874 3322 234456788999999999999999998877
No 124
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=27.23 E-value=3e+02 Score=23.62 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=67.6
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcHH
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLT 681 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGlt 681 (781)
.+++||.+.+. ..+.+..+.++.|. .|.... +..+....+.. ..|++++=. ..+.-|+.
T Consensus 5 ~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~ 65 (136)
T 3t6k_A 5 HTLLIVDDDDT-----------VAEMLELVLRGAGY--EVRRAA------SGEEALQQIYKNLPDALICDVLLPGIDGYT 65 (136)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHH
T ss_pred CEEEEEeCCHH-----------HHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 46777776543 34566666666653 344332 23455555542 357777643 33455777
Q ss_pred HHHHHHc-----CCcEEE-cCcccc---ccccccCCeEEEECCCCHHHHHHHHHHHHH
Q 003987 682 VVEAMTC-----GLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (781)
Q Consensus 682 vlEAMa~-----GlPVVa-T~~gG~---~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~ 730 (781)
+++.+.. .+|+|. |..+.. .+.+..|..+|+..|.+.+++..+|..++.
T Consensus 66 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~ 123 (136)
T 3t6k_A 66 LCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILA 123 (136)
T ss_dssp HHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHh
Confidence 8777643 678876 333332 234567889999999999999999988763
No 125
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=25.87 E-value=3.4e+02 Score=27.96 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCCceEEEE--cC----C------CchHHHHHHHHHcCCcEEEEec
Q 003987 405 QGFPDFIIG--NY----S------DGNLVASLLAYKMGITQCTIAH 438 (781)
Q Consensus 405 ~~kpDIIh~--~~----~------~~~lva~llar~~gvp~v~t~H 438 (781)
..+||+|++ |. . .|-..|++-+..+|+|-+..-.
T Consensus 82 ~~~PDLVvSGIN~G~Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~ 127 (280)
T 1l5x_A 82 GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSA 127 (280)
T ss_dssp TSCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCEEEECCccCCcCCccccccchhHHHHHHHHHcCCCeEEEEc
Confidence 458999994 11 1 1124566677778999887643
No 126
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=25.85 E-value=43 Score=34.53 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=15.9
Q ss_pred HHHHHHHHCCCceeecceEEEccC
Q 003987 318 EMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~~~ 341 (781)
.+++.|.++|++|. ++++..
T Consensus 28 ~l~~~L~~~g~~V~----~~~r~~ 47 (342)
T 2x4g_A 28 HAARAIRAAGHDLV----LIHRPS 47 (342)
T ss_dssp HHHHHHHHTTCEEE----EEECTT
T ss_pred HHHHHHHHCCCEEE----EEecCh
Confidence 56677889999998 887763
No 127
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=25.42 E-value=39 Score=33.16 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=40.8
Q ss_pred HHHHHHHccCcEEEEcCCCCCCcH--HHHHHHHcCCcEEEcCc-cccccccc----cC------CeEEEECCCCHHHHHH
Q 003987 657 ELYRYIADTKGAFVQPAFYEAFGL--TVVEAMTCGLPTFATCH-GGPAEIIE----HG------ASGFHIDPYHPDQAAE 723 (781)
Q Consensus 657 el~~~la~aadvfV~PS~~E~fGl--tvlEAMa~GlPVVaT~~-gG~~EiI~----dg------~~G~lv~p~d~~~lA~ 723 (781)
+=-+.+...+|+||.-. -++|. .+.||+..|+||++-+. |...+.+. +| ....+.-.+|++++.+
T Consensus 110 ~Rk~~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~ 187 (195)
T 1rcu_A 110 MRSFVLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQ 187 (195)
T ss_dssp HHHHHHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHH
T ss_pred HHHHHHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHH
Confidence 33455555677766532 34554 47899999999999864 33332222 11 1112222348888888
Q ss_pred HHHHH
Q 003987 724 LMADF 728 (781)
Q Consensus 724 ~I~~~ 728 (781)
.|.++
T Consensus 188 ~l~~~ 192 (195)
T 1rcu_A 188 IIEQI 192 (195)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 87543
No 128
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=25.32 E-value=3.4e+02 Score=23.67 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=66.5
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcHH
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLT 681 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGlt 681 (781)
.+++|+.+.+. ....+....++.|. .|.... +..+....+.. ..|++++-. ..+.-|+.
T Consensus 4 ~~ILivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dliild~~l~~~~g~~ 64 (155)
T 1qkk_A 4 PSVFLIDDDRD-----------LRKAMQQTLELAGF--TVSSFA------SATEALAGLSADFAGIVISDIRMPGMDGLA 64 (155)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHTCCTTCCSEEEEESCCSSSCHHH
T ss_pred CEEEEEeCCHH-----------HHHHHHHHHHHcCc--EEEEEC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 46777776643 34566666666654 344332 23444544432 246666643 33445676
Q ss_pred HHHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 682 VVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 682 vlEAMa---~GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
+++.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++...|..++
T Consensus 65 ~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 119 (155)
T 1qkk_A 65 LFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAE 119 (155)
T ss_dssp HHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Confidence 766654 47888764 3332 334456788999999999999999998776
No 129
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=25.27 E-value=1.8e+02 Score=24.98 Aligned_cols=107 Identities=10% Similarity=0.160 Sum_probs=64.4
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCCCCCCcHHH
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAFYEAFGLTV 682 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGltv 682 (781)
.+++|+.+.+. ....+....++.|. .|.... +..+....+.. ..|++++-...+.-|+.+
T Consensus 5 ~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~ 65 (142)
T 2qxy_A 5 PTVMVVDESRI-----------TFLAVKNALEKDGF--NVIWAK------NEQEAFTFLRREKIDLVFVDVFEGEESLNL 65 (142)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHGGGTC--EEEEES------SHHHHHHHHTTSCCSEEEEECTTTHHHHHH
T ss_pred CeEEEEeCCHH-----------HHHHHHHHHHhCCC--EEEEEC------CHHHHHHHHhccCCCEEEEeCCCCCcHHHH
Confidence 46777776543 34556666666553 344332 23455555543 246666544222235555
Q ss_pred HHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 683 VEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 683 lEAMa---~GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
++.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++.+.|..++
T Consensus 66 ~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 119 (142)
T 2qxy_A 66 IRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKII 119 (142)
T ss_dssp HHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHH
Confidence 55553 36888764 3333 233455688999999999999999998776
No 130
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=25.08 E-value=3.1e+02 Score=23.09 Aligned_cols=107 Identities=10% Similarity=0.108 Sum_probs=64.1
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEE-EeccccCcCChHHHHHHHH-ccCcEEEEcC-CCCCCcH
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR-WIAAQTNRARNGELYRYIA-DTKGAFVQPA-FYEAFGL 680 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~-flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fGl 680 (781)
.+++|+.+.+. ..+.+....++.|. .+. ... + ..+....+. ...|++++-. ..+.-|+
T Consensus 2 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~~---~---~~~a~~~~~~~~~dlii~d~~l~~~~g~ 62 (134)
T 3f6c_A 2 LNAIIIDDHPL-----------AIAAIRNLLIKNDI--EILAELT---E---GGSAVQRVETLKPDIVIIDVDIPGVNGI 62 (134)
T ss_dssp EEEEEECCCHH-----------HHHHHHHHHHHTTE--EEEEEES---S---STTHHHHHHHHCCSEEEEETTCSSSCHH
T ss_pred eEEEEEcCCHH-----------HHHHHHHHHhhCCc--EEEEEcC---C---HHHHHHHHHhcCCCEEEEecCCCCCChH
Confidence 46677776543 35566677776652 232 222 1 123333332 2367766643 3455677
Q ss_pred HHHHHHHc---CCcEEEc-Ccc---ccccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 681 TVVEAMTC---GLPTFAT-CHG---GPAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~---GlPVVaT-~~g---G~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
.+++.+.. .+|+|.. ... ...+.+..|..|++..|.+.+++.++|..++
T Consensus 63 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 118 (134)
T 3f6c_A 63 QVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 118 (134)
T ss_dssp HHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHH
Confidence 77776653 5677663 322 2344556788999999999999999998776
No 131
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=25.04 E-value=2.9e+02 Score=28.99 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=13.9
Q ss_pred HHHHHHHHCCCceeecceEEEc
Q 003987 318 EMLLRIKRQGLDISPKILIVTR 339 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~ 339 (781)
++++.+++.|++|. ++..
T Consensus 25 ~~~~a~~~~G~~v~----~~~~ 42 (391)
T 1kjq_A 25 EVAIECQRLGVEVI----AVDR 42 (391)
T ss_dssp HHHHHHHTTTCEEE----EEES
T ss_pred HHHHHHHHcCCEEE----EEEC
Confidence 56778899999887 6644
No 132
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=24.65 E-value=3.1e+02 Score=23.01 Aligned_cols=76 Identities=5% Similarity=0.087 Sum_probs=49.5
Q ss_pred hHHHHHHHH-ccCcEEEEcC-CCCCCcHHHHHHHHc-----CCcEEEc-Ccc--ccccccccCCeEEEECCCCHHHHHHH
Q 003987 655 NGELYRYIA-DTKGAFVQPA-FYEAFGLTVVEAMTC-----GLPTFAT-CHG--GPAEIIEHGASGFHIDPYHPDQAAEL 724 (781)
Q Consensus 655 ~~el~~~la-~aadvfV~PS-~~E~fGltvlEAMa~-----GlPVVaT-~~g--G~~EiI~dg~~G~lv~p~d~~~lA~~ 724 (781)
..+....+. ...|++++-. ..+.-|+.+++.+.. .+|+|.. ... ...+.+..|..+++..|.+.+++.++
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 115 (133)
T 3nhm_A 36 GASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQ 115 (133)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHH
Confidence 345555543 2356766643 345567777777654 6788774 222 22445667888999999999999999
Q ss_pred HHHHHH
Q 003987 725 MADFFG 730 (781)
Q Consensus 725 I~~~l~ 730 (781)
|..++.
T Consensus 116 i~~~l~ 121 (133)
T 3nhm_A 116 LHALLA 121 (133)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988873
No 133
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=24.08 E-value=3.2e+02 Score=22.90 Aligned_cols=108 Identities=10% Similarity=0.103 Sum_probs=65.7
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCC-CCCCcH
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAF-YEAFGL 680 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGl 680 (781)
..+++|+.+.+. ....+.+..++.|. .+.... +..+..+.+.. ..|++++-.. .+.-|+
T Consensus 7 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~ 67 (130)
T 3eod_A 7 GKQILIVEDEQV-----------FRSLLDSWFSSLGA--TTVLAA------DGVDALELLGGFTPDLMICDIAMPRMNGL 67 (130)
T ss_dssp TCEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHHHTTCCCSEEEECCC-----CH
T ss_pred CCeEEEEeCCHH-----------HHHHHHHHHHhCCc--eEEEeC------CHHHHHHHHhcCCCCEEEEecCCCCCCHH
Confidence 467888877643 35566777777654 344432 24566666643 2467766432 345577
Q ss_pred HHHHHHHc---CCcEEEc-Ccccc---ccccccCCeEEEECCC-CHHHHHHHHHHHH
Q 003987 681 TVVEAMTC---GLPTFAT-CHGGP---AEIIEHGASGFHIDPY-HPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa~---GlPVVaT-~~gG~---~EiI~dg~~G~lv~p~-d~~~lA~~I~~~l 729 (781)
.+++.+.. .+|+|.. ..... .+.+..|..+++..|. +.+.+.+.|..++
T Consensus 68 ~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l 124 (130)
T 3eod_A 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 (130)
T ss_dssp HHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHh
Confidence 77776653 5777764 33322 3455678999999998 8999999998776
No 134
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=23.76 E-value=3.2e+02 Score=22.79 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=67.7
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcHH
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLT 681 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGlt 681 (781)
.+++|+.+.+. ..+.+.+..++.|. .|.... +..+....+.. ..|++++=. ..+.-|+.
T Consensus 4 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~ 64 (127)
T 3i42_A 4 QQALIVEDYQA-----------AAETFKELLEMLGF--QADYVM------SGTDALHAMSTRGYDAVFIDLNLPDTSGLA 64 (127)
T ss_dssp EEEEEECSCHH-----------HHHHHHHHHHHTTE--EEEEES------SHHHHHHHHHHSCCSEEEEESBCSSSBHHH
T ss_pred ceEEEEcCCHH-----------HHHHHHHHHHHcCC--CEEEEC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 56777776643 35667777777654 344432 24455555542 356666643 34556788
Q ss_pred HHHHHH-----cCCcEEEc-Ccccc--ccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 682 VVEAMT-----CGLPTFAT-CHGGP--AEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 682 vlEAMa-----~GlPVVaT-~~gG~--~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
+++.+. ..+|+|.. ..... .+.+..|..+++..|-+.+++.+++....
T Consensus 65 ~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 65 LVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp HHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhh
Confidence 877765 35788774 32222 34556678899999999999999997653
No 135
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=23.36 E-value=4.1e+02 Score=23.94 Aligned_cols=14 Identities=14% Similarity=0.301 Sum_probs=10.2
Q ss_pred HHHHHHHHCCCcee
Q 003987 318 EMLLRIKRQGLDIS 331 (781)
Q Consensus 318 eLa~~L~~~GheV~ 331 (781)
.+++.|.+.|++|.
T Consensus 40 ~~~~~l~~~G~~v~ 53 (144)
T 2d59_A 40 IVMKYLLEHGYDVY 53 (144)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHCCCEEE
Confidence 45567889999755
No 136
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=23.23 E-value=4.1e+02 Score=23.86 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=13.7
Q ss_pred HHHHHHHHCCCceeecceEEEcc
Q 003987 318 EMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~~ 340 (781)
.+++.|.+.|++|. .+.+.
T Consensus 32 ~~~~~L~~~G~~V~----~vnp~ 50 (138)
T 1y81_A 32 IILKDLLSKGFEVL----PVNPN 50 (138)
T ss_dssp HHHHHHHHTTCEEE----EECTT
T ss_pred HHHHHHHHCCCEEE----EeCCC
Confidence 56777899999866 66443
No 137
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=23.08 E-value=3.3e+02 Score=22.71 Aligned_cols=108 Identities=13% Similarity=0.215 Sum_probs=67.0
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCC-CCCCcH
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAF-YEAFGL 680 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGl 680 (781)
..+++|+.+.+. ..+.+....+..|. .|.... +..+....+.. ..|++++=.. ...-|+
T Consensus 3 ~~~ilivdd~~~-----------~~~~l~~~l~~~~~--~v~~~~------~~~~~~~~~~~~~~dlvi~D~~l~~~~g~ 63 (126)
T 1dbw_A 3 DYTVHIVDDEEP-----------VRKSLAFMLTMNGF--AVKMHQ------SAEAFLAFAPDVRNGVLVTDLRMPDMSGV 63 (126)
T ss_dssp CCEEEEEESSHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHHGGGCCSEEEEEECCSTTSCHH
T ss_pred CCEEEEEcCCHH-----------HHHHHHHHHHhCCc--EEEEeC------CHHHHHHHHhcCCCCEEEEECCCCCCCHH
Confidence 356778877643 34556666666553 344332 23455555543 2466665332 234567
Q ss_pred HHHHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 681 TVVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa---~GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
.+++.+. ..+|+|.. .... ..+.+..|..|++..|.+.+++.++|..++
T Consensus 64 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 119 (126)
T 1dbw_A 64 ELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERAS 119 (126)
T ss_dssp HHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 7776664 46788764 3333 234456788999999999999999997765
No 138
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=22.97 E-value=51 Score=33.61 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=24.8
Q ss_pred CCceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEc
Q 003987 276 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTR 339 (781)
Q Consensus 276 p~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~ 339 (781)
+|+|||+||...|. .|+ .+++.|.+.||+|. ++.+
T Consensus 9 ~mmm~I~iIG~tG~-----------mG~--------------~la~~l~~~g~~V~----~~~r 43 (286)
T 3c24_A 9 VGPKTVAILGAGGK-----------MGA--------------RITRKIHDSAHHLA----AIEI 43 (286)
T ss_dssp CCCCEEEEETTTSH-----------HHH--------------HHHHHHHHSSSEEE----EECC
T ss_pred ccCCEEEEECCCCH-----------HHH--------------HHHHHHHhCCCEEE----EEEC
Confidence 56789999964333 232 57778899999887 6644
No 139
>3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP}
Probab=22.92 E-value=4.2e+02 Score=26.92 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHHc
Q 003987 391 TFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKM 429 (781)
Q Consensus 391 ~f~~~~~~~i~~~~~~kpDIIh~~~~~~~lva~llar~~ 429 (781)
.++.++...+.+....+|-++.+|+ .++.+|..++.++
T Consensus 132 ~~~~~~~~~l~~~~~~~~~~lvGhS-~Gg~vA~~~A~~~ 169 (319)
T 3lcr_A 132 VLVRSLADVVQAEVADGEFALAGHS-SGGVVAYEVAREL 169 (319)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEET-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEC-HHHHHHHHHHHHH
Confidence 4444555555554344565666664 5566677676665
No 140
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=22.82 E-value=62 Score=33.09 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=16.1
Q ss_pred HHHHHHHHCCCceeecceEEEccC
Q 003987 318 EMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~~~ 341 (781)
.++++|.++|++|. +++|..
T Consensus 26 ~l~~~L~~~g~~V~----~l~R~~ 45 (318)
T 2r6j_A 26 HMVKGSLKLGHPTY----VFTRPN 45 (318)
T ss_dssp HHHHHHHHTTCCEE----EEECTT
T ss_pred HHHHHHHHCCCcEE----EEECCC
Confidence 56677889999998 888864
No 141
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=22.78 E-value=58 Score=33.33 Aligned_cols=20 Identities=15% Similarity=-0.067 Sum_probs=15.9
Q ss_pred HHHHHHHHCCCceeecceEEEccC
Q 003987 318 EMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~~~ 341 (781)
.+++.|.++||+|. +++|..
T Consensus 19 ~l~~~L~~~g~~V~----~~~R~~ 38 (321)
T 3c1o_A 19 FMVRASLSFSHPTF----IYARPL 38 (321)
T ss_dssp HHHHHHHHTTCCEE----EEECCC
T ss_pred HHHHHHHhCCCcEE----EEECCc
Confidence 45677888999998 888863
No 142
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=22.68 E-value=3.2e+02 Score=22.45 Aligned_cols=106 Identities=9% Similarity=0.093 Sum_probs=66.4
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CC-CCCcH
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FY-EAFGL 680 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~-E~fGl 680 (781)
.+++|+.+.+. ..+.+....++.|. +|.... +..+....+.. ..|+++.-. .. ..-|.
T Consensus 6 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~ 66 (127)
T 2gkg_A 6 KKILIVESDTA-----------LSATLRSALEGRGF--TVDETT------DGKGSVEQIRRDRPDLVVLAVDLSAGQNGY 66 (127)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHHTC--EEEEEC------CHHHHHHHHHHHCCSEEEEESBCGGGCBHH
T ss_pred CeEEEEeCCHH-----------HHHHHHHHHHhcCc--eEEEec------CHHHHHHHHHhcCCCEEEEeCCCCCCCCHH
Confidence 36777776543 34566666666554 344332 23445554442 356766643 23 44577
Q ss_pred HHHHHHH-----cCCcEEEcCcccc----ccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 681 TVVEAMT-----CGLPTFATCHGGP----AEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa-----~GlPVVaT~~gG~----~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
.+++.+. ..+|+|.. .... .+.+..|..+++..|.+.+++.+.|..++
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 67 LICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALI 123 (127)
T ss_dssp HHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHH
Confidence 7777774 46888887 3322 33456788999999999999999997765
No 143
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=22.36 E-value=95 Score=30.84 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=24.3
Q ss_pred hcCCCCceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCcee
Q 003987 272 LGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 331 (781)
Q Consensus 272 ~~r~p~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~ 331 (781)
..+-+| |||++|.-|-.+. ...|+. .++|.+.+++.+.+.|++|+
T Consensus 20 ~~~~~M-~kiLiI~gsp~~~-------~s~~s~-------n~~L~~~~~~~l~~~g~ev~ 64 (218)
T 3rpe_A 20 FQSNAM-SNVLIINAMKEFA-------HSKGAL-------NLTLTNVAADFLRESGHQVK 64 (218)
T ss_dssp ----CC-CCEEEEECCCCBT-------TBCSHH-------HHHHHHHHHHHHHHTTCCEE
T ss_pred cccccC-cceEEEEeCCCcc-------cCCChH-------HHHHHHHHHHHHhhCCCEEE
Confidence 334444 8999997543210 001222 23344466677888999998
No 144
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=22.31 E-value=2.5e+02 Score=27.91 Aligned_cols=20 Identities=10% Similarity=-0.072 Sum_probs=15.0
Q ss_pred HHHHHHHHC-CCceeecceEEEccC
Q 003987 318 EMLLRIKRQ-GLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~-GheV~~~v~VvT~~~ 341 (781)
.+++.|.++ |++|. +++|..
T Consensus 15 ~l~~~L~~~~g~~V~----~~~R~~ 35 (289)
T 3e48_A 15 HITNQAIANHIDHFH----IGVRNV 35 (289)
T ss_dssp HHHHHHHHTTCTTEE----EEESSG
T ss_pred HHHHHHhhCCCCcEE----EEECCH
Confidence 455667887 99998 888763
No 145
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=22.27 E-value=54 Score=30.76 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=16.0
Q ss_pred HHHHHHHHCCCceeecceEEEccC
Q 003987 318 EMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~~~ 341 (781)
.+++.|.++|++|. +++|..
T Consensus 18 ~l~~~l~~~g~~V~----~~~r~~ 37 (206)
T 1hdo_A 18 TTLAQAVQAGYEVT----VLVRDS 37 (206)
T ss_dssp HHHHHHHHTTCEEE----EEESCG
T ss_pred HHHHHHHHCCCeEE----EEEeCh
Confidence 56778899999998 887763
No 146
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=22.26 E-value=39 Score=32.62 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=16.3
Q ss_pred HHHHHHHHCCCceeecceEEEccC
Q 003987 318 EMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~~~ 341 (781)
.+++.|.++|++|. +++|..
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~~ 34 (219)
T 3dqp_A 15 SLLKSLSTTDYQIY----AGARKV 34 (219)
T ss_dssp HHHHHHTTSSCEEE----EEESSG
T ss_pred HHHHHHHHCCCEEE----EEECCc
Confidence 56778899999998 888763
No 147
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.13 E-value=3.5e+02 Score=22.62 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=66.4
Q ss_pred EEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcHHH
Q 003987 605 NLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLTV 682 (781)
Q Consensus 605 ~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGltv 682 (781)
+++||.+.+. ..+.+....++.|. .|.... +..+....+.. ..|++++=. ..+.-|+.+
T Consensus 4 ~ILivdd~~~-----------~~~~l~~~l~~~g~--~v~~~~------~~~~al~~l~~~~~dlvllD~~~p~~~g~~~ 64 (122)
T 3gl9_A 4 KVLLVDDSAV-----------LRKIVSFNLKKEGY--EVIEAE------NGQIALEKLSEFTPDLIVLXIMMPVMDGFTV 64 (122)
T ss_dssp EEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHTTBCCSEEEECSCCSSSCHHHH
T ss_pred eEEEEeCCHH-----------HHHHHHHHHHHCCc--EEEEeC------CHHHHHHHHHhcCCCEEEEeccCCCCcHHHH
Confidence 5666666532 34556666666653 344332 24555666543 246766643 334567888
Q ss_pred HHHHH-----cCCcEEE-cCcccc---ccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 683 VEAMT-----CGLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 683 lEAMa-----~GlPVVa-T~~gG~---~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
++.+. ..+|+|. |..+.. .+.+..|..+++..|.+.+++.++|..++
T Consensus 65 ~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 65 LKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp HHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 88774 3578876 443332 23446788999999999999999997765
No 148
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=22.01 E-value=2.3e+02 Score=26.68 Aligned_cols=107 Identities=11% Similarity=0.145 Sum_probs=65.1
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHccCcEEEEcC-CCCCCcHHH
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPA-FYEAFGLTV 682 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS-~~E~fGltv 682 (781)
.+++||.+.+. ..+.+....+..+ .|.... +..+....+. ..|++++=. ..+.-|+.+
T Consensus 3 ~~ilivdd~~~-----------~~~~l~~~L~~~~---~v~~~~------~~~~al~~~~-~~dlvllD~~lp~~~g~~~ 61 (220)
T 1p2f_A 3 WKIAVVDDDKN-----------ILKKVSEKLQQLG---RVKTFL------TGEDFLNDEE-AFHVVVLDVMLPDYSGYEI 61 (220)
T ss_dssp EEEEEECSCHH-----------HHHHHHHHHTTTE---EEEEES------SHHHHHHCCS-CCSEEEEESBCSSSBHHHH
T ss_pred ceEEEEeCCHH-----------HHHHHHHHHHhCC---CEEEEC------CHHHHHHhcC-CCCEEEEeCCCCCCCHHHH
Confidence 35667766543 3445555555443 344332 2344444443 477777643 334457777
Q ss_pred HHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHHHh
Q 003987 683 VEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFFGK 731 (781)
Q Consensus 683 lEAMa---~GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l~~ 731 (781)
++.+. ..+|+|.- .... ..+.+..|..|++..|.+.+++.++|..++..
T Consensus 62 ~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 62 CRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp HHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 76664 47888764 3332 23345578899999999999999999887743
No 149
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=21.72 E-value=40 Score=32.53 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=15.9
Q ss_pred HHHHHHHHCCCceeecceEEEccC
Q 003987 318 EMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~~~ 341 (781)
.+++.|.++|++|. +++|..
T Consensus 19 ~l~~~L~~~g~~V~----~~~r~~ 38 (227)
T 3dhn_A 19 ALLNEALNRGFEVT----AVVRHP 38 (227)
T ss_dssp HHHHHHHTTTCEEE----EECSCG
T ss_pred HHHHHHHHCCCEEE----EEEcCc
Confidence 56678899999998 887763
No 150
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=21.70 E-value=1.6e+02 Score=30.97 Aligned_cols=18 Identities=11% Similarity=0.098 Sum_probs=12.3
Q ss_pred HHHHHHHCCCceeecceEEEc
Q 003987 319 MLLRIKRQGLDISPKILIVTR 339 (781)
Q Consensus 319 La~~L~~~GheV~~~v~VvT~ 339 (781)
..+.|.+.||+|. .|+|.
T Consensus 17 ~L~~L~~~~~~v~---~Vvt~ 34 (314)
T 3tqq_A 17 TLRALIDSSHRVL---AVYTQ 34 (314)
T ss_dssp HHHHHHHSSSEEE---EEECC
T ss_pred HHHHHHHCCCeEE---EEEeC
Confidence 3456788999975 46654
No 151
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=21.53 E-value=75 Score=32.34 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=18.3
Q ss_pred cccCCeeeecccccCCHHHHHHHHHHHHHHhcCCCC
Q 003987 187 HKYKGHLLMLNDRIQSISRLQSSLSKAEDHLSKLPP 222 (781)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (781)
|+|+.-..+++++|.|.++++..+. .-.|..+|.
T Consensus 6 ~~~~~~~~~~~~~i~~~~~ie~~~~--~p~lg~iP~ 39 (271)
T 3bfv_A 6 HHHHHGSVIFDKRIKDEEDVEKELG--LPVLGSIQK 39 (271)
T ss_dssp ----------CCCCCSHHHHHHHHC--CCEEEEEEC
T ss_pred cccccccEEeeCcCCCHHHHHHHhC--CCeEEEecc
Confidence 4444557899999999998887653 456666665
No 152
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=21.07 E-value=2.9e+02 Score=25.11 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=27.6
Q ss_pred ccHhhhhcCCCCceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEcc
Q 003987 266 STLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 266 ~~~~~f~~r~p~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~~ 340 (781)
..++.|+.+ ..+|++|....-|+. .|. .+++.|.+.|++|. .+.+.
T Consensus 4 ~~l~~ll~~---p~~IavIGas~~~g~--------~G~--------------~~~~~L~~~G~~v~----~vnp~ 49 (145)
T 2duw_A 4 NDIAGILTS---TRTIALVGASDKPDR--------PSY--------------RVMKYLLDQGYHVI----PVSPK 49 (145)
T ss_dssp CSHHHHHHH---CCCEEEESCCSCTTS--------HHH--------------HHHHHHHHHTCCEE----EECSS
T ss_pred HHHHHHHhC---CCEEEEECcCCCCCC--------hHH--------------HHHHHHHHCCCEEE----EeCCc
Confidence 456666642 247999975433211 122 56677889999876 66544
No 153
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=20.89 E-value=69 Score=30.71 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=22.8
Q ss_pred CCCCceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCcee
Q 003987 274 RLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 331 (781)
Q Consensus 274 r~p~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~ 331 (781)
++.+.|||+|=|.|.-+ + |-+.|.+.|.++||+|.
T Consensus 16 ~~~~~MkIaIgsDhaG~--------------~---------lK~~i~~~L~~~G~eV~ 50 (169)
T 3ph3_A 16 PRGSHMKIGIGSDHGGY--------------N---------LKREIADFLKKRGYEVI 50 (169)
T ss_dssp -----CEEEEEECGGGH--------------H---------HHHHHHHHHHHTTCEEE
T ss_pred ccCCCCEEEEEeCchHH--------------H---------HHHHHHHHHHHCCCEEE
Confidence 45667999999988632 1 22367788999999997
No 154
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=20.82 E-value=54 Score=33.27 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=16.4
Q ss_pred HHHHHHHHCCCceeecceEEEccCC
Q 003987 318 EMLLRIKRQGLDISPKILIVTRLIP 342 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~~~p 342 (781)
.+++.|.++||+|. ++++...
T Consensus 22 ~l~~~L~~~g~~V~----~~~r~~~ 42 (321)
T 3vps_A 22 HLARALVASGEEVT----VLDDLRV 42 (321)
T ss_dssp HHHHHHHHTTCCEE----EECCCSS
T ss_pred HHHHHHHHCCCEEE----EEecCCc
Confidence 56678899999998 8877643
No 155
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.76 E-value=4.2e+02 Score=23.04 Aligned_cols=107 Identities=9% Similarity=0.163 Sum_probs=62.2
Q ss_pred eEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcC-CCCCCcHH
Q 003987 604 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLT 681 (781)
Q Consensus 604 v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGlt 681 (781)
.+++||.+.+. ....+....++.|. .|.... +..+....+.. ..|++++-. ..+.-|+.
T Consensus 15 ~~ILivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~ 75 (153)
T 3hv2_A 15 PEILLVDSQEV-----------ILQRLQQLLSPLPY--TLHFAR------DATQALQLLASREVDLVISAAHLPQMDGPT 75 (153)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHTTSSC--EEEEES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHH
T ss_pred ceEEEECCCHH-----------HHHHHHHHhcccCc--EEEEEC------CHHHHHHHHHcCCCCEEEEeCCCCcCcHHH
Confidence 56667766532 24445555555442 233332 23444444432 246666543 23445666
Q ss_pred HHHHHH---cCCcEEEc-Cccc---cccccccC-CeEEEECCCCHHHHHHHHHHHH
Q 003987 682 VVEAMT---CGLPTFAT-CHGG---PAEIIEHG-ASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 682 vlEAMa---~GlPVVaT-~~gG---~~EiI~dg-~~G~lv~p~d~~~lA~~I~~~l 729 (781)
+++.+. ..+|||.- .... ..+.+..| ..+++..|.+.+++..+|..++
T Consensus 76 ~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 76 LLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp HHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHH
Confidence 666654 46788764 3332 22344567 7899999999999999998776
No 156
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=20.70 E-value=63 Score=33.48 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.4
Q ss_pred HHHHHHHHCCCceeecceEEEcc
Q 003987 318 EMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~~ 340 (781)
-++..|++.|++|+ ++++.
T Consensus 16 ~~a~~L~~~g~~V~----~~~r~ 34 (312)
T 3hn2_A 16 YYGALLQRSGEDVH----FLLRR 34 (312)
T ss_dssp HHHHHHHHTSCCEE----EECST
T ss_pred HHHHHHHHCCCeEE----EEEcC
Confidence 46677899999999 88764
No 157
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=20.54 E-value=54 Score=31.57 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=15.0
Q ss_pred HHHHHHH-HCCCceeecceEEEcc
Q 003987 318 EMLLRIK-RQGLDISPKILIVTRL 340 (781)
Q Consensus 318 eLa~~L~-~~GheV~~~v~VvT~~ 340 (781)
.+++.|. ++|++|. +++|.
T Consensus 20 ~~~~~l~~~~g~~V~----~~~r~ 39 (221)
T 3r6d_A 20 XLTATLLTYTDMHIT----LYGRQ 39 (221)
T ss_dssp HHHHHHHHHCCCEEE----EEESS
T ss_pred HHHHHHHhcCCceEE----EEecC
Confidence 5667788 8999998 88776
No 158
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=20.52 E-value=52 Score=34.30 Aligned_cols=20 Identities=10% Similarity=-0.202 Sum_probs=16.1
Q ss_pred HHHHHHHHCCCceeecceEEEccC
Q 003987 318 EMLLRIKRQGLDISPKILIVTRLI 341 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~~~ 341 (781)
.+++.|.++||+|. +++|..
T Consensus 25 ~l~~~L~~~g~~V~----~l~R~~ 44 (346)
T 3i6i_A 25 FVATASLDAHRPTY----ILARPG 44 (346)
T ss_dssp HHHHHHHHTTCCEE----EEECSS
T ss_pred HHHHHHHHCCCCEE----EEECCC
Confidence 56677889999998 888864
No 159
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=20.40 E-value=54 Score=34.13 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.5
Q ss_pred HHHHHHHHCCCceeecceEEEcc
Q 003987 318 EMLLRIKRQGLDISPKILIVTRL 340 (781)
Q Consensus 318 eLa~~L~~~GheV~~~v~VvT~~ 340 (781)
-++..|++.|++|+ ++++.
T Consensus 16 ~~a~~L~~~g~~V~----~~~r~ 34 (320)
T 3i83_A 16 FYGALLAKTGHCVS----VVSRS 34 (320)
T ss_dssp HHHHHHHHTTCEEE----EECST
T ss_pred HHHHHHHhCCCeEE----EEeCC
Confidence 46677899999999 88765
No 160
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}
Probab=20.38 E-value=1e+02 Score=32.10 Aligned_cols=126 Identities=15% Similarity=0.098 Sum_probs=66.2
Q ss_pred CCChHHHHHHHHHhhccCCCeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEE--EeccccCcCChHHHHHH
Q 003987 584 VKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR--WIAAQTNRARNGELYRY 661 (781)
Q Consensus 584 ~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~--flG~~~~~v~~~el~~~ 661 (781)
.+|++....-.+.- . ..-.+.|.|.|.+...- ++ -.++.+.+.+-|+- |. ..|..+.+..-.+--++
T Consensus 143 A~GID~~AH~~aL~-~--~g~TIaVl~~Gld~~YP--~~----n~~L~~~i~~~Gll--iSE~ppg~~p~~~~Fp~RNRi 211 (288)
T 3uqz_A 143 AKGIDTAAHMAALQ-N--GGKTIAVIGTGLDVFYP--KA----NKRLQDYIGNDHLV--LSEYGPGEQPLKFHFPARNRI 211 (288)
T ss_dssp CTTHHHHHHHHHHH-H--TCCEEEECSSCTTCCSS--GG----GHHHHHHHHHHSEE--EESSCTTCCCCTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHh-c--CCCEEEEecccccccCc--hh----hHHHHHHhcccCcE--eeccCCCCCccccccHHHHHH
Confidence 47999887654422 2 23577888888763211 11 22344444444430 00 11111111122233355
Q ss_pred HHccCcEEEEcCCCCCCcH--HHHHHHHcCCcEEEc-------CccccccccccCCeEEEECCCCHHHHHHH
Q 003987 662 IADTKGAFVQPAFYEAFGL--TVVEAMTCGLPTFAT-------CHGGPAEIIEHGASGFHIDPYHPDQAAEL 724 (781)
Q Consensus 662 la~aadvfV~PS~~E~fGl--tvlEAMa~GlPVVaT-------~~gG~~EiI~dg~~G~lv~p~d~~~lA~~ 724 (781)
++.-++..|...-.+.-|. |.-.|+..|+||+|- ...|+..+|.+| .-++. +++++.+.
T Consensus 212 IagLS~~~vVvEA~~~SGsliTA~~Ale~gR~VfavPG~i~~~~s~G~n~LI~~G--A~lv~--~~~Dil~e 279 (288)
T 3uqz_A 212 IAGLCRGVIVAEAKMRSGSLITCERAMEEGRDVFAIPGSILDGLSDGCHHLIQEG--AKLVT--SGQDVLAE 279 (288)
T ss_dssp HHHHCSEEEEESCCTTCHHHHHHHHHHHTTCEEEECCCCSSSSTTHHHHHHHHTT--CEECS--SHHHHHHH
T ss_pred HHHcCCeEEEEecCCCChHHHHHHHHHHcCCeEEEECCCCCCccchHHHHHHHCC--CEEEC--CHHHHHHH
Confidence 5555555544433343444 889999999999983 234677788876 33342 56665443
No 161
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=20.36 E-value=26 Score=35.32 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=24.0
Q ss_pred CceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCceeecceEEEc
Q 003987 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTR 339 (781)
Q Consensus 277 ~~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~~~v~VvT~ 339 (781)
|.|||+|....|+. |. .+++.|.++||+|. +++|
T Consensus 4 M~m~ilVtGatG~i-----------G~--------------~l~~~L~~~g~~V~----~~~r 37 (287)
T 3sc6_A 4 MKERVIITGANGQL-----------GK--------------QLQEELNPEEYDIY----PFDK 37 (287)
T ss_dssp -CEEEEEESTTSHH-----------HH--------------HHHHHSCTTTEEEE----EECT
T ss_pred ceeEEEEECCCCHH-----------HH--------------HHHHHHHhCCCEEE----Eecc
Confidence 55789988765552 21 56677888999998 7766
No 162
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=20.29 E-value=90 Score=29.35 Aligned_cols=35 Identities=14% Similarity=0.346 Sum_probs=24.8
Q ss_pred ceeEEEEccCcCCcccccCCCCCcccceeehHHHHHHHHHHHHHHHHHCCCcee
Q 003987 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 331 (781)
Q Consensus 278 ~mrI~ivS~h~~~~~~~vlg~p~~GG~~vyvld~araL~~eLa~~L~~~GheV~ 331 (781)
-||++|+- |=|..=-|.-.++ .++..|+++||+|+
T Consensus 6 ~m~~LilL-----------GCPE~Pvq~p~~l--------Yl~~~Lk~~G~~v~ 40 (157)
T 1kjn_A 6 TGKALMVL-----------GCPESPVQIPLAI--------YTSHKLKKKGFRVT 40 (157)
T ss_dssp CCEEEEEC-----------CCSCSTTHHHHHH--------HHHHHHHHTTCEEE
T ss_pred ceeeeEEe-----------cCCCCcchhhHHH--------HHHHHHHhcCCeeE
Confidence 47888873 3344444444455 78899999999997
No 163
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.22 E-value=4.3e+02 Score=22.93 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=65.4
Q ss_pred CeEEEEEeCcCCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccCcCChHHHHHHHHc-cCcEEEEcCC-CCCCcH
Q 003987 603 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAF-YEAFGL 680 (781)
Q Consensus 603 ~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~elgL~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGl 680 (781)
..+++|+.+.+. ..+.+....++. ..+...+. ..+..+....+.. ..|++++-.. .+.-|+
T Consensus 5 ~~~ILivdd~~~-----------~~~~l~~~L~~~---~~~~v~~~---~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~ 67 (153)
T 3cz5_A 5 TARIMLVDDHPI-----------VREGYRRLIERR---PGYAVVAE---AADAGEAYRLYRETTPDIVVMDLTLPGPGGI 67 (153)
T ss_dssp CEEEEEECSCHH-----------HHHHHHHHHTTS---TTEEEEEE---ESSHHHHHHHHHTTCCSEEEECSCCSSSCHH
T ss_pred ccEEEEECCcHH-----------HHHHHHHHHhhC---CCcEEEEE---eCCHHHHHHHHhcCCCCEEEEecCCCCCCHH
Confidence 367788877643 244455555431 12333321 1124556665553 2477776433 344577
Q ss_pred HHHHHHH---cCCcEEEc-Cccc---cccccccCCeEEEECCCCHHHHHHHHHHHH
Q 003987 681 TVVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 729 (781)
Q Consensus 681 tvlEAMa---~GlPVVaT-~~gG---~~EiI~dg~~G~lv~p~d~~~lA~~I~~~l 729 (781)
.+++.+. ..+|+|+. .... ..+.+..|..|++..|.+.+++.++|..++
T Consensus 68 ~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 68 EATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHH
Confidence 7776664 36788774 3322 334456788999999999999999997765
No 164
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=20.22 E-value=91 Score=34.53 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=78.6
Q ss_pred EEEEEeeccCCCChHHHHHHHHHhhccCCCeEEEEEeCcCCCC-------CCcch-HHHHHHHHHHHHHHHcCCCCcEEE
Q 003987 574 IVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVN-------KSKDR-EEIAEIEKMHELMKTYKLDGQFRW 645 (781)
Q Consensus 574 iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~v~LvIVG~g~~~~-------~~~d~-ee~~~~~~l~~li~elgL~~~V~f 645 (781)
.++++|. .+++..+.+.+++..+ +--+.+|+|+|.-.. +..+- --....++.+.+++++ ++-+.+
T Consensus 211 ~v~~i~~---~~~i~~~~~~~g~~~~--~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l--~~~~Vi 283 (461)
T 4g65_A 211 EVFFVAA---SNHIRSVMSELQRLEK--PYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL--ENTIVF 283 (461)
T ss_dssp EEEEEEE---TTTHHHHHHHTTGGGS--CCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC--TTSEEE
T ss_pred EEEEEec---cchHHHHHHhhccccc--cccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC--CCceEE
Confidence 3555554 5677788887776543 334788888885200 00000 0000123445555554 345666
Q ss_pred eccccCcCChHHHHHH--HHccCcEEEEcCCC-CCCcHHHHHHHHcCCcEEEc--CccccccccccCCeEEEECCCCHHH
Q 003987 646 IAAQTNRARNGELYRY--IADTKGAFVQPAFY-EAFGLTVVEAMTCGLPTFAT--CHGGPAEIIEHGASGFHIDPYHPDQ 720 (781)
Q Consensus 646 lG~~~~~v~~~el~~~--la~aadvfV~PS~~-E~fGltvlEAMa~GlPVVaT--~~gG~~EiI~dg~~G~lv~p~d~~~ 720 (781)
.| ...+.++..- +. .+|+||...-. |.-=++.+-|-..|.+-+.+ +.....++++...-...+.| ...
T Consensus 284 ~G----D~td~~~L~ee~i~-~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~~~gid~visp--~~~ 356 (461)
T 4g65_A 284 CG----DAADQELLTEENID-QVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQGGVIDVAISP--QQA 356 (461)
T ss_dssp ES----CTTCHHHHHHTTGG-GCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHCSSSSCEEECH--HHH
T ss_pred ec----cccchhhHhhcCch-hhcEEEEcccCcHHHHHHHHHHHHcCCccccccccccchhhhhhccccceeeCH--HHH
Confidence 77 3333444442 44 38888887643 33334667788899887777 44556666766555666764 234
Q ss_pred HHHHHHHHH
Q 003987 721 AAELMADFF 729 (781)
Q Consensus 721 lA~~I~~~l 729 (781)
.+..|.+.+
T Consensus 357 ~a~~I~~~i 365 (461)
T 4g65_A 357 TISALLTHV 365 (461)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 566665544
No 165
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.22 E-value=84 Score=24.33 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.8
Q ss_pred CCCCCCCchhHHHHhhhcCC
Q 003987 219 KLPPDTPFSQFEYVLQGMGF 238 (781)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~ 238 (781)
..++++-|+.--..|++|||
T Consensus 2 ~~~~ee~~a~~L~~L~eMGF 21 (54)
T 2cp8_A 2 SSGSSGQTAALMAHLFEMGF 21 (54)
T ss_dssp CCSSCTTHHHHHHHHHHHTC
T ss_pred CCCHHHhhHHHHHHHHHcCC
Confidence 46788888877779999999
Done!