Query 003989
Match_columns 781
No_of_seqs 247 out of 786
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:35:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 99.9 7.3E-29 2.5E-33 235.2 7.1 109 169-277 3-122 (140)
2 4fxw_B Splicing factor 1; UHM, 99.9 2.6E-28 8.8E-33 227.3 10.3 102 65-166 6-124 (124)
3 1k1g_A SF1-BO isoform; splicin 99.9 6.7E-27 2.3E-31 219.0 10.3 92 168-261 7-99 (131)
4 2yqr_A KIAA0907 protein; struc 99.9 1.5E-25 5.3E-30 207.2 8.2 98 168-272 12-110 (119)
5 2opv_A KHSRP protein; KH domai 99.3 5.5E-12 1.9E-16 108.8 8.7 72 168-261 14-85 (85)
6 3u1k_A Polyribonucleotide nucl 99.2 1.1E-11 3.7E-16 140.9 8.7 93 137-260 537-630 (630)
7 1x4m_A FAR upstream element bi 99.2 1.2E-11 3.9E-16 108.9 6.9 79 165-265 12-90 (94)
8 1we8_A Tudor and KH domain con 99.2 1E-11 3.4E-16 111.1 6.6 87 158-268 7-93 (104)
9 2hh3_A KH-type splicing regula 99.2 2.2E-11 7.4E-16 110.2 6.5 76 168-267 11-86 (106)
10 2ctk_A Vigilin; K homology typ 99.1 2.4E-11 8.3E-16 109.3 4.6 79 160-266 11-89 (104)
11 1x4n_A FAR upstream element bi 99.1 4.7E-11 1.6E-15 104.7 6.1 73 168-264 15-87 (92)
12 2hh2_A KH-type splicing regula 99.1 7.1E-11 2.4E-15 106.4 7.4 75 169-264 8-82 (107)
13 1zzk_A Heterogeneous nuclear r 99.1 8.2E-11 2.8E-15 100.9 7.3 74 168-265 7-80 (82)
14 4aid_A Polyribonucleotide nucl 99.1 3.2E-11 1.1E-15 138.9 4.8 100 136-266 539-639 (726)
15 1dtj_A RNA-binding neurooncolo 99.1 1.8E-10 6.2E-15 96.7 8.0 72 169-261 4-75 (76)
16 1wvn_A Poly(RC)-binding protei 99.1 9.6E-11 3.3E-15 100.3 6.0 70 169-262 7-76 (82)
17 1vig_A Vigilin; RNA-binding pr 99.1 1.2E-10 4.2E-15 97.8 6.2 66 169-260 6-71 (71)
18 3krm_A Insulin-like growth fac 99.1 3.5E-10 1.2E-14 106.3 10.0 104 135-264 56-159 (163)
19 2cte_A Vigilin; K homology typ 99.1 7.9E-11 2.7E-15 103.8 5.1 70 169-264 18-87 (94)
20 2p2r_A Poly(RC)-binding protei 99.1 1.2E-10 4.1E-15 98.2 6.0 70 168-261 5-74 (76)
21 2ctm_A Vigilin; K homology typ 99.0 1.5E-10 5.3E-15 102.6 5.9 75 169-268 18-92 (95)
22 2ctl_A Vigilin; K homology typ 99.0 1.9E-10 6.6E-15 102.2 6.4 74 169-265 18-91 (97)
23 1j5k_A Heterogeneous nuclear r 99.0 1.4E-10 4.9E-15 100.9 5.1 74 168-265 14-87 (89)
24 2jvz_A KH type-splicing, FAR u 99.0 3.3E-10 1.1E-14 105.9 7.3 107 135-265 56-164 (164)
25 1ec6_A RNA-binding protein NOV 99.0 1.5E-10 5.1E-15 100.1 4.3 78 169-267 4-81 (87)
26 2axy_A Poly(RC)-binding protei 99.0 3.4E-10 1.1E-14 95.4 6.1 67 169-261 6-72 (73)
27 2cpq_A FragIle X mental retard 99.0 1.8E-10 6E-15 102.7 4.4 68 168-264 15-84 (91)
28 2ctj_A Vigilin; K homology typ 99.0 2.2E-10 7.6E-15 101.9 4.5 71 169-265 18-89 (95)
29 2jzx_A Poly(RC)-binding protei 99.0 1.1E-09 3.7E-14 102.7 8.6 103 136-261 56-159 (160)
30 2dgr_A Ring finger and KH doma 98.9 9.9E-10 3.4E-14 95.6 4.7 67 169-262 11-77 (83)
31 2e3u_A PH-DIM2P, hypothetical 98.8 4.4E-09 1.5E-13 106.1 5.4 75 160-265 28-109 (219)
32 2jvz_A KH type-splicing, FAR u 98.7 2.4E-08 8.2E-13 93.3 8.7 74 169-264 3-76 (164)
33 1j4w_A FUSE binding protein; s 98.7 4.3E-08 1.5E-12 93.3 10.5 70 169-259 105-174 (174)
34 3cdi_A Polynucleotide phosphor 98.7 6.2E-09 2.1E-13 120.2 3.1 98 137-265 530-628 (723)
35 1j4w_A FUSE binding protein; s 98.6 2.1E-08 7.3E-13 95.4 5.5 72 169-264 4-75 (174)
36 2anr_A Neuro-oncological ventr 98.6 4.6E-08 1.6E-12 93.3 6.7 72 168-261 104-175 (178)
37 1e3p_A Guanosine pentaphosphat 98.5 1.2E-08 4E-13 118.4 -0.6 92 137-259 569-660 (757)
38 2jzx_A Poly(RC)-binding protei 98.5 9.9E-08 3.4E-12 89.3 5.4 69 168-262 5-73 (160)
39 3krm_A Insulin-like growth fac 98.5 1.5E-07 5.1E-12 88.4 6.6 71 169-262 4-74 (163)
40 2anr_A Neuro-oncological ventr 98.5 1.3E-07 4.4E-12 90.2 6.1 75 169-264 7-81 (178)
41 2qnd_A FMR1 protein; KH domain 98.0 6.4E-06 2.2E-10 77.6 6.1 74 170-262 69-143 (144)
42 2e3u_A PH-DIM2P, hypothetical 98.0 6.4E-06 2.2E-10 83.2 5.6 54 184-262 139-192 (219)
43 2ctf_A Vigilin; K homology typ 97.8 2.2E-05 7.4E-10 70.6 6.0 70 168-266 27-97 (102)
44 1tua_A Hypothetical protein AP 97.8 1.6E-05 5.6E-10 78.9 5.0 53 184-261 108-160 (191)
45 3n89_A Defective in GERM LINE 97.2 0.00049 1.7E-08 74.7 7.9 73 168-259 30-104 (376)
46 3n89_A Defective in GERM LINE 97.2 0.00044 1.5E-08 75.0 7.4 97 135-259 160-259 (376)
47 1tua_A Hypothetical protein AP 96.7 0.0019 6.5E-08 64.2 5.9 68 169-264 5-76 (191)
48 2qnd_A FMR1 protein; KH domain 96.6 0.0012 4E-08 62.2 3.9 60 169-255 5-64 (144)
49 3v69_A Protein filia; RNA-bind 95.5 0.022 7.7E-07 54.5 6.6 79 154-260 45-123 (140)
50 2z0s_A Probable exosome comple 83.0 1.9 6.4E-05 43.6 6.5 53 183-258 157-209 (235)
51 2cxc_A NUSA; transcription ter 77.3 1.4 4.7E-05 42.2 3.1 31 183-213 45-75 (144)
52 2jpi_A Hypothetical protein; a 71.7 4.5 0.00015 37.4 5.0 68 193-264 36-105 (118)
53 2ba0_A Archeal exosome RNA bin 67.5 4.8 0.00017 40.6 4.6 51 183-256 145-197 (229)
54 1wjw_A Phosphoacetylglucosamin 62.6 19 0.00063 32.5 7.1 53 193-263 44-97 (112)
55 1k0r_A NUSA; two component arr 54.5 4.5 0.00015 44.0 1.8 42 170-212 237-279 (366)
56 1go3_E DNA-directed RNA polyme 54.3 6.1 0.00021 38.0 2.5 36 169-213 8-55 (187)
57 2je6_I RRP4, exosome complex R 52.4 1.5 5.2E-05 45.0 -2.1 31 183-213 164-194 (251)
58 2nn6_G Exosome complex exonucl 47.7 6.4 0.00022 41.4 1.6 53 183-258 219-271 (289)
59 3szp_A Transcriptional regulat 47.6 12 0.00043 35.2 3.5 20 194-213 34-53 (291)
60 2asb_A Transcription elongatio 47.5 6.3 0.00021 41.0 1.5 70 136-212 86-156 (251)
61 3kax_A Aminotransferase, class 46.7 92 0.0032 31.0 9.8 23 237-259 359-382 (383)
62 2esn_A Probable transcriptiona 46.5 13 0.00044 36.0 3.5 20 194-213 43-62 (310)
63 3isp_A HTH-type transcriptiona 43.0 18 0.00062 34.9 3.9 20 194-213 39-58 (303)
64 3hhg_A Transcriptional regulat 39.1 15 0.00052 35.2 2.6 20 194-213 36-55 (306)
65 3ly1_A Putative histidinol-pho 38.7 2.2E+02 0.0076 28.0 11.1 25 237-261 327-351 (354)
66 1qz9_A Kynureninase; kynurenin 37.9 89 0.0031 31.6 8.2 26 237-262 373-402 (416)
67 2ja9_A Exosome complex exonucl 36.6 27 0.00091 34.1 3.9 52 183-257 100-152 (175)
68 1hh2_P NUSA, N utilization sub 36.2 14 0.00048 39.8 2.1 42 170-212 233-275 (344)
69 3fxq_A LYSR type regulator of 36.0 22 0.00074 34.5 3.2 20 194-213 35-54 (305)
70 3eth_A Phosphoribosylaminoimid 35.5 30 0.001 36.6 4.4 51 196-261 291-341 (355)
71 3fdb_A Beta C-S lyase, putativ 34.9 2.2E+02 0.0074 28.3 10.4 25 237-261 350-375 (377)
72 3k5i_A Phosphoribosyl-aminoimi 33.6 47 0.0016 35.2 5.6 50 197-260 350-399 (403)
73 3iev_A GTP-binding protein ERA 33.3 11 0.00039 38.4 0.8 36 170-210 242-285 (308)
74 3dzz_A Putative pyridoxal 5'-p 31.9 1.8E+02 0.0062 28.9 9.2 26 237-262 363-389 (391)
75 2pt7_G HP1451, hypothetical pr 30.8 12 0.00043 35.9 0.5 21 183-203 42-62 (152)
76 2cxc_A NUSA; transcription ter 30.3 11 0.00037 36.1 0.0 37 169-211 104-140 (144)
77 1ixc_A CBNR, LYSR-type regulat 29.6 13 0.00045 35.4 0.5 20 194-213 34-53 (294)
78 3f9t_A TDC, L-tyrosine decarbo 28.4 2.9E+02 0.0098 27.2 9.9 24 237-260 370-396 (397)
79 3jtx_A Aminotransferase; NP_28 28.2 2.2E+02 0.0074 28.6 9.1 24 237-260 372-396 (396)
80 3fzv_A Probable transcriptiona 27.0 19 0.00064 34.6 1.0 18 194-211 37-54 (306)
81 3mz1_A Putative transcriptiona 26.2 14 0.00048 34.9 0.0 20 194-213 31-50 (300)
82 2h9b_A HTH-type transcriptiona 25.8 14 0.00049 36.1 0.0 20 194-213 34-53 (312)
83 3ccd_A Phosphocarrier protein 25.6 1E+02 0.0035 26.4 5.3 62 195-261 21-83 (85)
84 4h51_A Aspartate aminotransfer 25.0 1.1E+02 0.0038 32.8 6.7 27 237-263 392-418 (420)
85 3qgu_A LL-diaminopimelate amin 24.2 1.9E+02 0.0066 29.8 8.1 26 237-262 414-440 (449)
86 3kki_A CAI-1 autoinducer synth 24.2 3.1E+02 0.011 27.8 9.6 25 237-261 376-403 (409)
87 2h98_A HTH-type transcriptiona 23.5 17 0.00058 36.0 0.0 20 194-213 34-53 (313)
88 3rq1_A Aminotransferase class 23.5 3.4E+02 0.012 27.6 9.7 26 237-262 388-415 (418)
89 4e4t_A Phosphoribosylaminoimid 23.2 86 0.0029 33.5 5.4 50 196-259 365-414 (419)
90 3e9k_A Kynureninase; kynurenin 23.1 2.9E+02 0.0098 28.9 9.2 20 243-262 442-461 (465)
91 3nnk_A Ureidoglycine-glyoxylat 22.3 4.7E+02 0.016 26.1 10.3 28 237-264 361-392 (411)
92 1fg7_A Histidinol phosphate am 22.2 5.5E+02 0.019 25.6 10.9 23 237-259 333-355 (356)
93 3l8a_A METC, putative aminotra 22.1 3.3E+02 0.011 27.9 9.3 24 237-260 396-420 (421)
94 3piu_A 1-aminocyclopropane-1-c 22.1 2.2E+02 0.0077 29.2 8.1 26 237-262 405-432 (435)
95 1uth_A LYSR-type regulatory pr 22.0 19 0.00065 35.4 0.0 20 194-213 47-66 (315)
96 3fvs_A Kynurenine--oxoglutarat 21.8 2.6E+02 0.009 28.3 8.4 25 237-261 396-421 (422)
97 2asb_A Transcription elongatio 21.8 59 0.002 33.8 3.6 39 168-212 184-222 (251)
98 1k0r_A NUSA; two component arr 20.7 52 0.0018 35.9 3.0 39 168-212 307-345 (366)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.95 E-value=7.3e-29 Score=235.17 Aligned_cols=109 Identities=28% Similarity=0.473 Sum_probs=94.8
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccC-CCCccCCCCceEEEEEecCHH-
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTS-DANVQSTYEEFHISISADSYE- 246 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~-Dg~~~~~~EpLHVlIsAdteE- 246 (781)
.+|||||+++||+|||||+||||||+|+|+||+||||||.|||+||+|++|+|...+ +..+++++|||||+|+|++.+
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 689999999999999999999999999999999999999999999999998876432 233789999999999998875
Q ss_pred ----HHHHHHHHHHhhccccccchhhhc-----ccccccc
Q 003989 247 ----KVDAATDLIELLVTSVSGSLAAIS-----TSTLVSG 277 (781)
Q Consensus 247 ----kVdkAvelIE~LL~pve~g~~a~~-----~~~~v~g 277 (781)
+|++|+++|+.||.++.++...++ +++.++|
T Consensus 83 ~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNG 122 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNG 122 (140)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSST
T ss_pred hHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcC
Confidence 999999999999999887765444 4455554
No 2
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=99.95 E-value=2.6e-28 Score=227.30 Aligned_cols=102 Identities=24% Similarity=0.457 Sum_probs=80.0
Q ss_pred CcccccCCCCCCCCcchh--------------hhhhhHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCCCCCCCCCCc
Q 003989 65 KKVVRKTKWGPDLSLDAS--------------VKRGRALAYQTRVDQIVQQLESGSLEAEENQVPEVAAQNADQKSPNPQ 130 (781)
Q Consensus 65 ~~rkRkSRWg~dl~~d~~--------------v~~~ra~a~Q~RieEItrkL~sg~le~~~~e~s~SPpP~p~yds~GkR 130 (781)
++||||||||.+...+.. .++.++|+||+|||||++||++|+++++.+++.+||+|+|+||++|+|
T Consensus 6 ~~~~r~srW~~~~~~~k~~ip~~pt~ip~~Lt~eq~~ay~~~~RieeIt~kL~~g~l~i~~~~~~RSPSPpP~Yd~~G~R 85 (124)
T 4fxw_B 6 SKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKR 85 (124)
T ss_dssp ------CCBCCC--------CCSCSBCCSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCSSTTSSCCCCCCCBCTTSCB
T ss_pred cccccccccCCCcccccccCCCCCeecCCCCCHHHHHHHHHHhhHHHHHHHHhcCCcCCCCCcccCCCCCCCccCccccc
Confidence 578999999976322211 267799999999999999999999998866677888999999999999
Q ss_pred cchH---HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 003989 131 VDRE---KLECLELEKQEVIGEILKLNPSYRTPPDYKPL 166 (781)
Q Consensus 131 iNTR---~rekLEeER~~IIe~mlkliP~frPPsDYkP~ 166 (781)
+||| +|++||+|||+||++|+++||.|++|.||||+
T Consensus 86 ~NTRE~R~r~~LE~ER~~lIe~~~k~~P~fkpP~DYkpp 124 (124)
T 4fxw_B 86 LNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPP 124 (124)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHGGGTCSSCCCCCC----
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCCCCC
Confidence 9996 48999999999999999999999999999974
No 3
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.94 E-value=6.7e-27 Score=219.00 Aligned_cols=92 Identities=32% Similarity=0.502 Sum_probs=85.7
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCC-ccCCCCceEEEEEecCHH
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDAN-VQSTYEEFHISISADSYE 246 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~-~~~~~EpLHVlIsAdteE 246 (781)
..+|||||+++||+|||||+||||||+|||+||+||||||.|||+||+++++.+ +.++. +++++|+|||+|+|++++
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~--~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVG--RKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSS--SCCCCCSCCSSCCEEEEEEESSHH
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCccccccccc--ccccccccccCCCeEEEEEECCHH
Confidence 479999999999999999999999999999999999999999999999987765 44555 888999999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 003989 247 KVDAATDLIELLVTS 261 (781)
Q Consensus 247 kVdkAvelIE~LL~p 261 (781)
+|++|+++|+.||.+
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999976
No 4
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=1.5e-25 Score=207.20 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=88.1
Q ss_pred cEEEEEcCCC-CCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHH
Q 003989 168 KEAVVPIPVK-EYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYE 246 (781)
Q Consensus 168 K~~KIyIPvk-eyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteE 246 (781)
..+|||||+| +||+|||||+||||||+|||+||+||||||.|||+||++.+. ...++++|+|||+|+|++.+
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~-------~~~~e~~e~l~V~I~a~~~e 84 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEP-------ASGREAFEPMYIYISHPKPE 84 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCT-------TTSSCCSSBCEEEEEESSHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCcccccc-------ccccccCCCcEEEEEeCCHH
Confidence 4799999999 699999999999999999999999999999999999986322 12456899999999999999
Q ss_pred HHHHHHHHHHhhccccccchhhhccc
Q 003989 247 KVDAATDLIELLVTSVSGSLAAISTS 272 (781)
Q Consensus 247 kVdkAvelIE~LL~pve~g~~a~~~~ 272 (781)
+|++|+++|++||.++.+++..+...
T Consensus 85 ~i~~A~~~Ie~Ll~~v~~~~~~~~~q 110 (119)
T 2yqr_A 85 GLAAAKKLCENLLQTVHAEYSRFVNQ 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 99999999999999999998877543
No 5
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.30 E-value=5.5e-12 Score=108.83 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=62.4
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 247 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEk 247 (781)
+..+|.||. +++|+|||++|+|+|+|+++|||+|.|..+|.. ....+-.|.|+| +.++
T Consensus 14 ~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---------------~~~~er~v~I~G-~~~~ 71 (85)
T 2opv_A 14 TVQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---------------NTNVDKPLRIIG-DPYK 71 (85)
T ss_dssp EEEEEEECT------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---------------STTSCEEEEEEE-CHHH
T ss_pred EEEEEEeCh------hheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---------------CCCCceEEEEEe-CHHH
Confidence 578999999 499999999999999999999999999987631 123355899999 9999
Q ss_pred HHHHHHHHHhhccc
Q 003989 248 VDAATDLIELLVTS 261 (781)
Q Consensus 248 VdkAvelIE~LL~p 261 (781)
+++|+++|+.|+.+
T Consensus 72 v~~A~~~I~~i~~e 85 (85)
T 2opv_A 72 VQQACEMVMDILRE 85 (85)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999864
No 6
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=140.94 Aligned_cols=93 Identities=20% Similarity=0.274 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCC-CCCCCCCccEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccC
Q 003989 137 ECLELEKQEVIGEILKLNPSYRT-PPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKAD 215 (781)
Q Consensus 137 ekLEeER~~IIe~mlkliP~frP-PsDYkP~~K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~ 215 (781)
+..+++|.+|++.|.+.+..+|. .++|.|. +.+|.||.+ +||.||||+|+|||+|++||||+|.|.+.|
T Consensus 537 ~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~--~~~~~I~~~------kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G-- 606 (630)
T 3u1k_A 537 QQASVAKKEILQIMNKTISKPRASRKENGPV--VETVQVPLS------KRAKFVGPGGYNLKKLQAETGVTISQVDEE-- 606 (630)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSSCCTTCCE--EEEEECCHH------HHHHHHCGGGHHHHHHHHHHCCEEEECSSS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCe--EEEEEeChh------HhheeECCCChhHHHHHHHHCCEEEEcCCc--
Confidence 45678899999999999999987 6788886 999999994 999999999999999999999999998776
Q ss_pred CCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhcc
Q 003989 216 TGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVT 260 (781)
Q Consensus 216 k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL~ 260 (781)
.|.|.|.|.+++++|+++|+.|++
T Consensus 607 ---------------------~V~I~~~~~~~~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 607 ---------------------TFSVFAPTPSAMHEARDFITEICK 630 (630)
T ss_dssp ---------------------EEEEEESSHHHHHHHHHHTTC---
T ss_pred ---------------------EEEEEeCCHHHHHHHHHHHHHHhC
Confidence 799999999999999999999874
No 7
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.22 E-value=1.2e-11 Score=108.95 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=66.6
Q ss_pred CCccEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecC
Q 003989 165 PLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADS 244 (781)
Q Consensus 165 P~~K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdt 244 (781)
|-....+|.||. +++|+|||.+|+|||+|+++|||+|.|..++... ..++..|.|+| +
T Consensus 12 p~~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---------------~~~~r~v~I~G-~ 69 (94)
T 1x4m_A 12 PGNAVQEIMIPA------SKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---------------TGADKPLRITG-D 69 (94)
T ss_dssp CCCEEEEEEECH------HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---------------SCSCEEEEEEE-C
T ss_pred CCcEEEEEEECh------hhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---------------CCCceEEEEEe-C
Confidence 344578999999 4999999999999999999999999999876311 12346899999 8
Q ss_pred HHHHHHHHHHHHhhccccccc
Q 003989 245 YEKVDAATDLIELLVTSVSGS 265 (781)
Q Consensus 245 eEkVdkAvelIE~LL~pve~g 265 (781)
.+++++|+++|++||.+.+++
T Consensus 70 ~~~v~~A~~~I~~~i~~~~~~ 90 (94)
T 1x4m_A 70 PYKVQQAKEMVLELIRDQGSG 90 (94)
T ss_dssp TTTHHHHHHHHHHHHCCCSSC
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 899999999999999987754
No 8
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.22 E-value=1e-11 Score=111.14 Aligned_cols=87 Identities=20% Similarity=0.172 Sum_probs=68.8
Q ss_pred CCCCCCCCCccEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceE
Q 003989 158 RTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFH 237 (781)
Q Consensus 158 rPPsDYkP~~K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLH 237 (781)
+..++|.|. ..+|.||. ++||+|||++|+|||+|+++|||+|.|...... ...++..
T Consensus 7 ~~~s~~ap~--~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---------------~~~~~~~ 63 (104)
T 1we8_A 7 GILTENTPV--FEQLSVPQ------RSVGRIIGRGGETIRSICKASGAKITCDKESEG---------------TLLLSRL 63 (104)
T ss_dssp CCCSSSCEE--EEEEEEET------TTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC---------------SSSSEEE
T ss_pred cccCCCCCE--EEEEEECh------hheeeeECCCCHHHHHHHHHHCCEEEEecCCCC---------------CCCCcce
Confidence 334566664 88999999 499999999999999999999999999876411 0124568
Q ss_pred EEEEecCHHHHHHHHHHHHhhccccccchhh
Q 003989 238 ISISADSYEKVDAATDLIELLVTSVSGSLAA 268 (781)
Q Consensus 238 VlIsAdteEkVdkAvelIE~LL~pve~g~~a 268 (781)
|.|+|.++ .+++|+++|+.+|.+...-...
T Consensus 64 V~I~G~~~-~v~~A~~~I~~~i~e~~~~~~~ 93 (104)
T 1we8_A 64 IKISGTQK-EVAAAKHLILEKVSEDEELRKR 93 (104)
T ss_dssp EEEEEEHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCHH-HHHHHHHHHHHHHhhChHHHHH
Confidence 99999776 7999999999999765544443
No 9
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=2.2e-11 Score=110.22 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=62.3
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 247 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEk 247 (781)
+..+|.||.+ +||+|||++|+|||+|++||||||.|..++. .+.+..|.|+++ .|.
T Consensus 11 ~~~~i~Ip~~------~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~-----------------~~~er~V~I~G~-~e~ 66 (106)
T 2hh3_A 11 GGIDVPVPRH------SVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----------------TGPEKIAHIMGP-PDR 66 (106)
T ss_dssp -CEEEEEETT------THHHHHTTTTHHHHHHHHHHTCEEEECSSCS-----------------SSSEEEEEEESS-HHH
T ss_pred eEEEEEECHH------HcCccCCCCcHHHHHHHHHHCcEEEEecCCC-----------------CCceeEEEEEeC-HHH
Confidence 4689999994 9999999999999999999999999986531 123458999996 999
Q ss_pred HHHHHHHHHhhccccccchh
Q 003989 248 VDAATDLIELLVTSVSGSLA 267 (781)
Q Consensus 248 VdkAvelIE~LL~pve~g~~ 267 (781)
+++|+++|++||.+.+++..
T Consensus 67 v~~A~~~I~~ii~~~~~g~~ 86 (106)
T 2hh3_A 67 CEHAARIINDLLQSLRSGPP 86 (106)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhccccCCC
Confidence 99999999999998887644
No 10
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.13 E-value=2.4e-11 Score=109.32 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=67.1
Q ss_pred CCCCCCCccEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEE
Q 003989 160 PPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHIS 239 (781)
Q Consensus 160 PsDYkP~~K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVl 239 (781)
..+|.|. ..+|.||.+ ++|+|||++|+|||+|++||||+|.|-..|.. .-.|.
T Consensus 11 i~~~ap~--~~~i~Ip~~------~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~-------------------~~~V~ 63 (104)
T 2ctk_A 11 LEALVPV--TIEVEVPFD------LHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQ-------------------SDIIA 63 (104)
T ss_dssp CCCSSCE--EEEEECCHH------HHHHHHCSSSHHHHHHHHHTCCEEECCCTTTT-------------------CCEEE
T ss_pred HHhhCCE--EEEEEEChH------HccceeCCCchHHHHHHHHHCCEEEecCCCCC-------------------cceEE
Confidence 4566664 899999994 99999999999999999999999999887631 11799
Q ss_pred EEecCHHHHHHHHHHHHhhccccccch
Q 003989 240 ISADSYEKVDAATDLIELLVTSVSGSL 266 (781)
Q Consensus 240 IsAdteEkVdkAvelIE~LL~pve~g~ 266 (781)
|+|.. +++++|+++|+.|+.+.+.+.
T Consensus 64 I~G~~-e~v~~A~~~I~~i~~e~e~~~ 89 (104)
T 2ctk_A 64 ITGLA-ANLDRAKAGLLERVKELQAEQ 89 (104)
T ss_dssp EEECH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCH-HHHHHHHHHHHHHHhhHHHhH
Confidence 99985 999999999999998877654
No 11
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.13 E-value=4.7e-11 Score=104.71 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=62.4
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 247 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEk 247 (781)
...+|+||. ++||+|||++|+|||+|+++|||+|.|..+.. ...+-.|.|+|. .|.
T Consensus 15 ~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-----------------g~~~r~v~I~G~-~e~ 70 (92)
T 1x4n_A 15 MTEEYKVPD------GMVGFIIGRGGEQISRIQQESGCKIQIAPDSG-----------------GLPERSCMLTGT-PES 70 (92)
T ss_dssp EEEEEEEEH------HHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT-----------------TCSEEEEEEEEC-HHH
T ss_pred EEEEEEECh------HHcceeECCCchHHHHHHHHhCCEEEEcCCCC-----------------CCCccEEEEEeC-HHH
Confidence 368999998 59999999999999999999999999987631 112348999997 999
Q ss_pred HHHHHHHHHhhcccccc
Q 003989 248 VDAATDLIELLVTSVSG 264 (781)
Q Consensus 248 VdkAvelIE~LL~pve~ 264 (781)
+++|+++|+++|.+...
T Consensus 71 v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 71 VQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999987654
No 12
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=7.1e-11 Score=106.42 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=62.9
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||. ++||+|||++|+|||+|+++|||+|.|..+.... ....+-.|.|++ +.|.|
T Consensus 8 ~~~i~IP~------~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~--------------~~~~~r~V~I~G-~~e~v 66 (107)
T 2hh2_A 8 EMTFSIPT------HKCGLVIGRGGENVKAINQQTGAFVEISRQLPPN--------------GDPNFKLFIIRG-SPQQI 66 (107)
T ss_dssp CEEEEEEG------GGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTT--------------CCTTEEEEEEES-CHHHH
T ss_pred eEEEEECH------HHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCC--------------CCCCceEEEEEC-CHHHH
Confidence 67899998 5999999999999999999999999998763110 112345899999 99999
Q ss_pred HHHHHHHHhhcccccc
Q 003989 249 DAATDLIELLVTSVSG 264 (781)
Q Consensus 249 dkAvelIE~LL~pve~ 264 (781)
++|+++|+++|.+...
T Consensus 67 ~~A~~~I~~~i~e~~~ 82 (107)
T 2hh2_A 67 DHAKQLIEEKIEGPLC 82 (107)
T ss_dssp HHHHHHHHHHSCSCCC
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999987654
No 13
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.12 E-value=8.2e-11 Score=100.87 Aligned_cols=74 Identities=24% Similarity=0.348 Sum_probs=61.7
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 247 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEk 247 (781)
...+|.||. +++|+|||++|+|||+|+++|||+|.|...-. ..++-.|.|+| +.|.
T Consensus 7 ~~~~i~Vp~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~-----------------~~~~~~v~I~G-~~~~ 62 (82)
T 1zzk_A 7 ITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEPLE-----------------GSEDRIITITG-TQDQ 62 (82)
T ss_dssp EEEEEEEET------TTGGGGTCGGGHHHHHHHHHHCCEEEECCTTS-----------------CSSEEEEEEEE-CHHH
T ss_pred EEEEEEECh------HhcCeeECCCchHHHHHHHHHCCEEEEcCCCC-----------------CCCceEEEEEe-CHHH
Confidence 367899999 49999999999999999999999999976410 11235899999 5999
Q ss_pred HHHHHHHHHhhccccccc
Q 003989 248 VDAATDLIELLVTSVSGS 265 (781)
Q Consensus 248 VdkAvelIE~LL~pve~g 265 (781)
+++|+++|++++.+...+
T Consensus 63 v~~A~~~I~~~i~~~~g~ 80 (82)
T 1zzk_A 63 IQNAQYLLQNSVKQYSGK 80 (82)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 999999999999876544
No 14
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.10 E-value=3.2e-11 Score=138.91 Aligned_cols=100 Identities=18% Similarity=0.264 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCC-CCCCCCCccEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCcc
Q 003989 136 LECLELEKQEVIGEILKLNPSYRT-PPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKA 214 (781)
Q Consensus 136 rekLEeER~~IIe~mlkliP~frP-PsDYkP~~K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS 214 (781)
.+..+++|.+|++.|.+.+...|. .++|+|. +.++.|+.+ +||.||||+|+|||+|++||||||.|.++|
T Consensus 539 L~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~--~~~~~i~~~------ki~~vig~gg~~i~~i~~~tg~~idi~ddG- 609 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDAPRADVGDFAPK--IETINIPTD------KIREVIGSGGKVIREIVATTGAKVDINDDG- 609 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccCCe--EEEEeCCHH------HHHhhcCCCchhHHHHHHHHCCceeEECCc-
Confidence 345678899999999999999887 7788887 899999995 999999999999999999999999999876
Q ss_pred CCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhccccccch
Q 003989 215 DTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSVSGSL 266 (781)
Q Consensus 215 ~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL~pve~g~ 266 (781)
.|.|.+.+.+++++|+++|+.|+...++|.
T Consensus 610 ----------------------~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~ 639 (726)
T 4aid_A 610 ----------------------VVKVSASDGAKIKAAIDWIKSITDEAEVGK 639 (726)
T ss_dssp --------------------------CCSCHHHHHHHHHC------------
T ss_pred ----------------------eEEEEeCCHHHHHHHHHHHHHHhhhhcCCc
Confidence 688999999999999999999999887764
No 15
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.09 E-value=1.8e-10 Score=96.67 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=59.6
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||. +++|+|||++|+|+|+|+++|||+|.|..++... ....+-.|.|+|+ .+.+
T Consensus 4 ~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--------------~~~~~~~v~I~G~-~~~v 62 (76)
T 1dtj_A 4 LVEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--------------PGTRNRRVTITGS-PAAT 62 (76)
T ss_dssp EEEEEEET------TTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--------------TTCCEEEEEEEES-HHHH
T ss_pred EEEEEECh------HHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--------------CCCceeEEEEEeC-HHHH
Confidence 46889998 5999999999999999999999999999764210 1123468999997 8999
Q ss_pred HHHHHHHHhhccc
Q 003989 249 DAATDLIELLVTS 261 (781)
Q Consensus 249 dkAvelIE~LL~p 261 (781)
++|+++|+.+|.+
T Consensus 63 ~~A~~~I~~~i~e 75 (76)
T 1dtj_A 63 QAAQYLISQRVTY 75 (76)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999864
No 16
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=9.6e-11 Score=100.30 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=58.7
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||. +++|+|||++|+|||+|+++|||+|.|..... ...+-.|.|+|.. +.+
T Consensus 7 ~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~-----------------~~~~r~v~I~G~~-~~v 62 (82)
T 1wvn_A 7 THELTIPN------NLIGCIIGRQGANINEIRQMSGAQIKIANPVE-----------------GSSGRQVTITGSA-ASI 62 (82)
T ss_dssp EEEEEEEG------GGHHHHHCGGGHHHHHHHHHHCCEEEECCCCT-----------------TCSEEEEEEEECH-HHH
T ss_pred EEEEEEch------HhccceeCCCchhHHHHHHHhCCEEEEecCCC-----------------CCCceEEEEEcCH-HHH
Confidence 57899998 59999999999999999999999999987421 1234589999965 999
Q ss_pred HHHHHHHHhhcccc
Q 003989 249 DAATDLIELLVTSV 262 (781)
Q Consensus 249 dkAvelIE~LL~pv 262 (781)
++|+++|+++|.+.
T Consensus 63 ~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 63 SLAQYLINARLSSE 76 (82)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999866
No 17
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.08 E-value=1.2e-10 Score=97.76 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=57.3
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||.+ ++|+|||++|+++|+|++||||+|.|-..|. .+-.|.|+|. .+++
T Consensus 6 ~~~i~I~~~------~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~-------------------~~~~V~I~G~-~~~v 59 (71)
T 1vig_A 6 YVEINIDHK------FHRHLIGKSGANINRIKDQYKVSVRIPPDSE-------------------KSNLIRIEGD-PQGV 59 (71)
T ss_dssp EEEEEECSS------HHHHHTCSSCCHHHHHHHHTCCEEECCCCCS-------------------SSEEEEEEES-SHHH
T ss_pred EEEEEECHH------HhhhhcCCCCccHHHHHHHHCCEEEECCCCC-------------------cccEEEEEcC-HHHH
Confidence 578899985 9999999999999999999999999988762 0127999998 5899
Q ss_pred HHHHHHHHhhcc
Q 003989 249 DAATDLIELLVT 260 (781)
Q Consensus 249 dkAvelIE~LL~ 260 (781)
++|+++|+.|+.
T Consensus 60 ~~A~~~I~~i~~ 71 (71)
T 1vig_A 60 QQAKRELLELAS 71 (71)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC
Confidence 999999999863
No 18
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.08 E-value=3.5e-10 Score=106.26 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCcc
Q 003989 135 KLECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKA 214 (781)
Q Consensus 135 ~rekLEeER~~IIe~mlkliP~frPPsDYkP~~K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS 214 (781)
..+..++.+..|++.|.+.. .+.+ .+ ......+|.||. +++|+|||.+|+|+|+|+++|||+|.|.+++.
T Consensus 56 ~~e~v~~A~~~I~~~~~e~~-~~~~-~~--~~~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~ 125 (163)
T 3krm_A 56 PPEAQFKAQGRIYGKLKEEN-FFGP-KE--EVKLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT 125 (163)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-SSCS-SC--CCCEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC
T ss_pred CHHHHHHHHHHHHHHHhccc-cccc-cc--CCceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCC
Confidence 45778888888988888762 1111 11 112356899998 59999999999999999999999999987752
Q ss_pred CCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhcccccc
Q 003989 215 DTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSVSG 264 (781)
Q Consensus 215 ~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL~pve~ 264 (781)
.+.+++-.|.|+| +.+++++|+++|+.||.+++.
T Consensus 126 ---------------~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 126 ---------------PDENDQVIVKIIG-HFYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp ---------------CCTTSEEEEEEEE-CHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------CCCCCceEEEEEe-CHHHHHHHHHHHHHHHHHHHH
Confidence 1133445799999 789999999999999998765
No 19
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.07 E-value=7.9e-11 Score=103.78 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=60.7
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||.+ ++|+|||++|+|+|+|++||||+|.|...+. ++-.|.|+|. .+.+
T Consensus 18 t~~i~Ip~~------~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~-------------------~~~~V~I~G~-~e~v 71 (94)
T 2cte_A 18 SATVAIPKE------HHRFVIGKNGEKLQDLELKTATKIQIPRPDD-------------------PSNQIKITGT-KEGI 71 (94)
T ss_dssp EEEEECCTT------THHHHHCSSSCHHHHHHHHTTCCCBCCCTTS-------------------SCCEEEEEEC-HHHH
T ss_pred EEEEEEChH------HeeeeECCCChhHHHHHHHHCCEEEeCCCCC-------------------CCCeEEEEEC-HHHH
Confidence 578999985 9999999999999999999999999976531 1238999998 9999
Q ss_pred HHHHHHHHhhcccccc
Q 003989 249 DAATDLIELLVTSVSG 264 (781)
Q Consensus 249 dkAvelIE~LL~pve~ 264 (781)
++|+++|+.|+.+...
T Consensus 72 ~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 72 EKARHEVLLISAEQDK 87 (94)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999999999987654
No 20
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=98.25 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 247 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEk 247 (781)
...+|.||. +++|+|||++|+++|+|+++|||+|.|..... ...+-.|.|+|. .+.
T Consensus 5 ~~~~i~Ip~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~-----------------~~~~~~v~I~G~-~~~ 60 (76)
T 2p2r_A 5 TSHELTIPN------DLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-----------------GSTDRQVTITGS-AAS 60 (76)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCCCT-----------------TCSEEEEEEEEC-HHH
T ss_pred eEEEEEECh------HHcceEECCCChHHHHHHHHHCCEEEEcCCCC-----------------CCCeEEEEEEeC-HHH
Confidence 467999998 59999999999999999999999999987410 123458999997 999
Q ss_pred HHHHHHHHHhhccc
Q 003989 248 VDAATDLIELLVTS 261 (781)
Q Consensus 248 VdkAvelIE~LL~p 261 (781)
+++|+++|+.+|.+
T Consensus 61 v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 61 ISLAQYLINVRLSS 74 (76)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999864
No 21
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.05 E-value=1.5e-10 Score=102.59 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=64.4
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||.+ ++|+|||++|+|+|+|+++|||+|.|.++|... +-.|.|+|. .|++
T Consensus 18 t~~i~Ip~~------~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~------------------~~~V~I~G~-~e~v 72 (95)
T 2ctm_A 18 SEDVPLDHR------VHARIIGARGKAIRKIMDEFKVDIRFPQSGAPD------------------PNCVTVTGL-PENV 72 (95)
T ss_dssp CEEEECCTT------THHHHHCSSSCHHHHHHHHHTCEEECCCTTCSC------------------TTEEEEESC-HHHH
T ss_pred EEEEEECHH------HccccCCCCcchHHHHHHHHCCeEEecCCCCCC------------------CcEEEEEcC-HHHH
Confidence 579999995 999999999999999999999999998876311 127999998 6999
Q ss_pred HHHHHHHHhhccccccchhh
Q 003989 249 DAATDLIELLVTSVSGSLAA 268 (781)
Q Consensus 249 dkAvelIE~LL~pve~g~~a 268 (781)
++|+++|+.|+.+.+.+...
T Consensus 73 ~~A~~~I~~i~~e~~~~~~~ 92 (95)
T 2ctm_A 73 EEAIDHILNLEEEYLADSGP 92 (95)
T ss_dssp HHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999988776543
No 22
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.04 E-value=1.9e-10 Score=102.20 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=62.8
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||.+ ++|+|||++|+|||+|+++|||+|.|-..|... ..+-.|.|+|. .+.+
T Consensus 18 ~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~----------------~~~~~V~I~G~-~e~v 74 (97)
T 2ctl_A 18 KLSVTVDPK------YHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGN----------------QPQDQITITGY-EKNT 74 (97)
T ss_dssp EEEEECCTT------THHHHSCSSSCHHHHHHHHHTCEEECCCTTTCS----------------SCSSEEEEESC-HHHH
T ss_pred eEEEEECHH------HhhhcCCCCchhHHHHHHHHCCEEEecCCCCCC----------------CCccEEEEEeC-HHHH
Confidence 689999995 999999999999999999999999998876311 12237999997 9999
Q ss_pred HHHHHHHHhhccccccc
Q 003989 249 DAATDLIELLVTSVSGS 265 (781)
Q Consensus 249 dkAvelIE~LL~pve~g 265 (781)
++|+++|+.|+..++..
T Consensus 75 ~~A~~~I~~iv~e~e~~ 91 (97)
T 2ctl_A 75 EAARDAILRIVGELEQM 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999876653
No 23
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.04 E-value=1.4e-10 Score=100.93 Aligned_cols=74 Identities=24% Similarity=0.341 Sum_probs=60.9
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 247 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEk 247 (781)
...+|.||. +++|+|||.+|+|||+|+++|||+|.|..... ..++-.|.|+|. .|.
T Consensus 14 ~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~-----------------~~~~~~v~I~G~-~e~ 69 (89)
T 1j5k_A 14 ITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEPLE-----------------GSEDRIITITGT-QDQ 69 (89)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHTCCEEEECSCCS-----------------SSSEEEEEEEEE-HHH
T ss_pred EEEEEEECh------hhcceeECCCCHhHHHHHHHhCCeEEecCCCC-----------------CCCccEEEEEcC-HHH
Confidence 367899998 59999999999999999999999999976410 122358999997 999
Q ss_pred HHHHHHHHHhhccccccc
Q 003989 248 VDAATDLIELLVTSVSGS 265 (781)
Q Consensus 248 VdkAvelIE~LL~pve~g 265 (781)
+++|+++|+++|.+...+
T Consensus 70 v~~A~~~I~~~i~e~~g~ 87 (89)
T 1j5k_A 70 IQNAQYLLQNSVKQYSGK 87 (89)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhhcC
Confidence 999999999999876443
No 24
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.02 E-value=3.3e-10 Score=105.94 Aligned_cols=107 Identities=15% Similarity=0.242 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCCCCCCCCCc-cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCC
Q 003989 135 KLECLELEKQEVIGEILKLNP-SYRTPPDYKPLL-KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGT 212 (781)
Q Consensus 135 ~rekLEeER~~IIe~mlkliP-~frPPsDYkP~~-K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGk 212 (781)
..+.+++.+..|++.|.+... .|.+..+|.... ...+|.||. +++|+|||.+|+|+|+|+++|||+|.|..+
T Consensus 56 ~~~~v~~A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~------~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~ 129 (164)
T 2jvz_A 56 DPYKVQQACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQD 129 (164)
T ss_dssp CHHHHHHHHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEET------TTHHHHHCSSSHHHHHHHHHTCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCCCccccCCCCCceEEEEECh------hhccccCCCCcHhHHHHHHHHCCeEEEeCC
Confidence 346777777777777665543 344445565431 246788887 599999999999999999999999999865
Q ss_pred ccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhccccccc
Q 003989 213 KADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSVSGS 265 (781)
Q Consensus 213 GS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL~pve~g 265 (781)
.. ...+-.|.|+|+ .+.+++|+++|+.||.+.++|
T Consensus 130 ~~-----------------~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~~g 164 (164)
T 2jvz_A 130 DG-----------------TGPEKIAHIMGP-PDRCEHAARIINDLLQSLRSG 164 (164)
T ss_dssp CT-----------------TSSEEEEEEESC-HHHHHHHHHHHHHHHHHHHCC
T ss_pred CC-----------------CCCcEEEEEEcC-HHHHHHHHHHHHHHHhhhhCC
Confidence 31 122358999996 899999999999999987754
No 25
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.02 E-value=1.5e-10 Score=100.14 Aligned_cols=78 Identities=22% Similarity=0.223 Sum_probs=63.8
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||. +++|+|||++|+|||+|+++|||+|.|..++... ....+-.|.|+|. .+.+
T Consensus 4 t~~i~IP~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------------~g~~~r~v~I~G~-~~~v 62 (87)
T 1ec6_A 4 LVEIAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--------------PGTRNRRVTITGS-PAAT 62 (87)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--------------TTSCEEEEEEESS-HHHH
T ss_pred EEEEEECh------HHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--------------CCCCceEEEEEcC-HHHH
Confidence 56889998 5999999999999999999999999999764110 0123458999996 8999
Q ss_pred HHHHHHHHhhccccccchh
Q 003989 249 DAATDLIELLVTSVSGSLA 267 (781)
Q Consensus 249 dkAvelIE~LL~pve~g~~ 267 (781)
++|+++|+.+|.+.+...+
T Consensus 63 ~~A~~~I~~~i~~~~~~r~ 81 (87)
T 1ec6_A 63 QAAQYLISQRVTYEQGVRA 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccc
Confidence 9999999999987665543
No 26
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.01 E-value=3.4e-10 Score=95.43 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=59.3
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..++.||. +++|.|||++|+++|+|+++|||+|.|...|+ .+-.|.|+|. .+.+
T Consensus 6 ~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~-------------------~er~v~I~G~-~~~v 59 (73)
T 2axy_A 6 TIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC-------------------PERIITLAGP-TNAI 59 (73)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC-------------------SEEEEEEEEC-HHHH
T ss_pred EEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCCC-------------------CcEEEEEEeC-HHHH
Confidence 67899998 59999999999999999999999999988752 1237999998 9999
Q ss_pred HHHHHHHHhhccc
Q 003989 249 DAATDLIELLVTS 261 (781)
Q Consensus 249 dkAvelIE~LL~p 261 (781)
++|+++|+.+|.+
T Consensus 60 ~~A~~~I~~~l~e 72 (73)
T 2axy_A 60 FKAFAMIIDKLEE 72 (73)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999875
No 27
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.00 E-value=1.8e-10 Score=102.69 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCe-EEEeCC-ccCCCcchhcccCCCCccCCCCceEEEEEecCH
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTV-IKVYGT-KADTGEKVEISTSDANVQSTYEEFHISISADSY 245 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAK-I~IRGk-GS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdte 245 (781)
.++.+.||.| +||.||||+|+|||+|+++|||+ |.|.++ | .|.|+|.+.
T Consensus 15 ~i~~i~I~~d------kIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG-----------------------~V~I~g~~~ 65 (91)
T 2cpq_A 15 FHEEFVVRED------LMGLAIGTHGSNIQQARKVPGVTAIELDEDTG-----------------------TFRIYGESA 65 (91)
T ss_dssp EEEEEECCHH------HHHHHHTTTTHHHHHHHTSTTEEEEEEETTTT-----------------------EEEEEESSH
T ss_pred eEEEEEEChH------HhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCC-----------------------EEEEEECCH
Confidence 3789999995 99999999999999999999998 999753 3 799999999
Q ss_pred HHHHHHHHHHHhhcccccc
Q 003989 246 EKVDAATDLIELLVTSVSG 264 (781)
Q Consensus 246 EkVdkAvelIE~LL~pve~ 264 (781)
|++++|+++|+.|-+.+.+
T Consensus 66 ea~~~A~~~I~~ie~~~~v 84 (91)
T 2cpq_A 66 DAVKKARGFLEFVEDFIQV 84 (91)
T ss_dssp HHHHHHHHHHSCCCCCCCC
T ss_pred HHHHHHHHHHHhhheEEec
Confidence 9999999999998776654
No 28
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.99 E-value=2.2e-10 Score=101.89 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=62.1
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHh-CCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKET-RTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 247 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeET-GAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEk 247 (781)
.++|.||.+ |++.|||++|+|||+|++|| ||+|.|-..|+.. -.|.|+|.++ .
T Consensus 18 t~~i~Ip~~------~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~-------------------~~V~I~G~~~-~ 71 (95)
T 2ctj_A 18 EVEVSIPAK------LHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGS-------------------DTVVIRGPSS-D 71 (95)
T ss_dssp CEEEECCHH------HHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTC-------------------CEEEEESCHH-H
T ss_pred EEEEEECHH------HHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCc-------------------ceEEEEcCHH-H
Confidence 578999995 99999999999999999999 9999998877421 1799999887 9
Q ss_pred HHHHHHHHHhhccccccc
Q 003989 248 VDAATDLIELLVTSVSGS 265 (781)
Q Consensus 248 VdkAvelIE~LL~pve~g 265 (781)
+++|+++|+.|+.+.+..
T Consensus 72 v~~A~~~I~~iv~e~e~~ 89 (95)
T 2ctj_A 72 VEKAKKQLLHLAEEKQTK 89 (95)
T ss_dssp HHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhhhc
Confidence 999999999999877653
No 29
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.97 E-value=1.1e-09 Score=102.68 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-CccEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCcc
Q 003989 136 LECLELEKQEVIGEILKLNPSYRTPPDYKP-LLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKA 214 (781)
Q Consensus 136 rekLEeER~~IIe~mlkliP~frPPsDYkP-~~K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS 214 (781)
.+.+++.|..|++.|.+.....++.+.... .....++.||. +++|+|||.+|+++|+|+++|||+|.|.+...
T Consensus 56 ~~~v~~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~ 129 (160)
T 2jzx_A 56 TNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 129 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCCS
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCccCCCCCEEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCCC
Confidence 577888888888888876544332111111 12478899997 59999999999999999999999999976421
Q ss_pred CCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhccc
Q 003989 215 DTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTS 261 (781)
Q Consensus 215 ~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL~p 261 (781)
...++-.|.|+| +.+.+++|+++|+++|.+
T Consensus 130 ----------------~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 130 ----------------PNSTERAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp ----------------TTCCEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 012345899999 899999999999998864
No 30
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=9.9e-10 Score=95.57 Aligned_cols=67 Identities=31% Similarity=0.434 Sum_probs=56.1
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||. +++|+|||++|+|||+||+||||+|.|-.++. | -.|.|+++. |.+
T Consensus 11 ~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~-------------------~-~~v~ItG~~-e~v 63 (83)
T 2dgr_A 11 TIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK-------------------E-PVFAVTGMP-ENV 63 (83)
T ss_dssp EEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSSS-------------------C-CEEEEEECT-TTH
T ss_pred EEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCCC-------------------C-CeEEEEcCH-HHH
Confidence 57888987 59999999999999999999999999975421 1 258888876 899
Q ss_pred HHHHHHHHhhcccc
Q 003989 249 DAATDLIELLVTSV 262 (781)
Q Consensus 249 dkAvelIE~LL~pv 262 (781)
++|+++|++++..-
T Consensus 64 ~~A~~~I~~~i~~r 77 (83)
T 2dgr_A 64 DRAREEIEAHITLR 77 (83)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999976543
No 31
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.77 E-value=4.4e-09 Score=106.06 Aligned_cols=75 Identities=24% Similarity=0.271 Sum_probs=60.2
Q ss_pred CCCCCCCccEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEe-CCccCCCcchhcccCCCCccCCCCceEE
Q 003989 160 PPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVY-GTKADTGEKVEISTSDANVQSTYEEFHI 238 (781)
Q Consensus 160 PsDYkP~~K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IR-GkGS~k~~K~E~~~~Dg~~~~~~EpLHV 238 (781)
.++|+|. +.+|.||. +.||.|||++|+|+|.|+++|||+|.|. ..| .|
T Consensus 28 ~s~~aP~--i~~i~IP~------~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g-----------------------~V 76 (219)
T 2e3u_A 28 WEEFFKQ--EEYVKIPK------DRIAVLIGKKGQTKKEIEKRTKTKITIDSETG-----------------------EV 76 (219)
T ss_dssp -----CC--EEEEECCH------HHHHHHHCGGGHHHHHHHHHHTEEEEECTTTC-----------------------EE
T ss_pred cCCCCCE--EEEEEeCH------HHhhhhhcccHHHHHHHHHHHCcEEEEEcCCC-----------------------EE
Confidence 4567775 88999999 5999999999999999999999999997 333 57
Q ss_pred EEEecC----HHHHHHHHHHHHhhc--cccccc
Q 003989 239 SISADS----YEKVDAATDLIELLV--TSVSGS 265 (781)
Q Consensus 239 lIsAdt----eEkVdkAvelIE~LL--~pve~g 265 (781)
.|.+.+ .+++++|+++|+.|+ .+++++
T Consensus 77 ~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g 109 (219)
T 2e3u_A 77 WITSTKETEDPLAVWKARDIVLAIGRGFSPERA 109 (219)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHhccCCcccc
Confidence 888876 899999999999999 444443
No 32
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.73 E-value=2.4e-08 Score=93.31 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=61.4
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||.+ ++|+|||.+|+|||+|+++|||+|.|..++.. ....+-.|.|+| +.+.+
T Consensus 3 ~~~~~Vp~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~---------------~~~~~r~v~I~G-~~~~v 60 (164)
T 2jvz_A 3 VQEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---------------NTNVDKPLRIIG-DPYKV 60 (164)
T ss_dssp EEEEEECTT------CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS---------------SSSSCEEEEEEE-CHHHH
T ss_pred EEEEEechh------heeEEECCChHHHHHHHHHhCCeEEEecCCCC---------------CCCCceEEEEEc-CHHHH
Confidence 468999984 99999999999999999999999999755421 012345789999 78999
Q ss_pred HHHHHHHHhhcccccc
Q 003989 249 DAATDLIELLVTSVSG 264 (781)
Q Consensus 249 dkAvelIE~LL~pve~ 264 (781)
++|+++|..++.+.+.
T Consensus 61 ~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 61 QQACEMVMDILRERDQ 76 (164)
T ss_dssp HHHHHHHHHHTTCSSS
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999987763
No 33
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.73 E-value=4.3e-08 Score=93.34 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=58.2
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||. +++|+|||.+|+|||+|+++|||+|.|..+.... ....+-.|.|+| +.+.+
T Consensus 105 ~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~--------------~~~~~~~v~I~G-~~~~v 163 (174)
T 1j4w_A 105 EFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQRNPPPN--------------ADPNMKLFTIRG-TPQQI 163 (174)
T ss_dssp EEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTT--------------SCTTEEEEEEEC-CHHHH
T ss_pred EEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECCCCCCC--------------CCCCceEEEEEC-CHHHH
Confidence 67889987 5999999999999999999999999998763110 112344799999 89999
Q ss_pred HHHHHHHHhhc
Q 003989 249 DAATDLIELLV 259 (781)
Q Consensus 249 dkAvelIE~LL 259 (781)
++|+++|+++|
T Consensus 164 ~~A~~~I~~~i 174 (174)
T 1j4w_A 164 DYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999886
No 34
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.66 E-value=6.2e-09 Score=120.16 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCC-CCCCCCCccEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccC
Q 003989 137 ECLELEKQEVIGEILKLNPSYRT-PPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKAD 215 (781)
Q Consensus 137 ekLEeER~~IIe~mlkliP~frP-PsDYkP~~K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~ 215 (781)
+...+.|.+|++.|.+.+...+. .++|.|. +.++.|+.+ +||.||||+|+|||.|++|||++|.|+++|
T Consensus 530 ~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~--~~~~~i~~~------ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg-- 599 (723)
T 3cdi_A 530 NQAKGARLHILGVMEQAINAPRGDISEFAPR--IHTIKINPD------KIKDVIGKGGSVIRALTEETGTTIEIEDDG-- 599 (723)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhccccCce--EEEEEECHH------HhcccccccceeeeeeehhhCceEEecCCc--
Confidence 45678899999999999988876 6788886 889999985 999999999999999999999999999876
Q ss_pred CCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhccccccc
Q 003989 216 TGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSVSGS 265 (781)
Q Consensus 216 k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL~pve~g 265 (781)
.|+|++.+.+++++|.++|+.|+...++|
T Consensus 600 ---------------------~v~I~~~~~~~~~~a~~~i~~i~~~~~vG 628 (723)
T 3cdi_A 600 ---------------------TVKIAATDGEKAKHAIRRIEEITAEIEVG 628 (723)
T ss_dssp --------------------------------------------------
T ss_pred ---------------------cEEEecCCHHHHHHHHHHHHHHhhhhhcC
Confidence 58899999999999999999998777665
No 35
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.64 E-value=2.1e-08 Score=95.42 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=59.9
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||. +++|+|||.+|++||+|+++|||+|.|..... ...+-.|.|+|. .+.+
T Consensus 4 ~~~~~vp~------~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~-----------------~~~~r~v~I~G~-~~~v 59 (174)
T 1j4w_A 4 MIDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG-----------------TTPERIAQITGP-PDRA 59 (174)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEECCTT-----------------SCSEEEEEEEEC-HHHH
T ss_pred EEEEEECh------hheeeeecCCchHHHHHHHHhCCEEEEecCCC-----------------CCCccEEEEEeC-HHHH
Confidence 46888888 59999999999999999999999999975310 123357899997 8999
Q ss_pred HHHHHHHHhhcccccc
Q 003989 249 DAATDLIELLVTSVSG 264 (781)
Q Consensus 249 dkAvelIE~LL~pve~ 264 (781)
++|+++|+++|...+.
T Consensus 60 ~~A~~~I~~~~~~~~~ 75 (174)
T 1j4w_A 60 QHAAEIITDLLRSVQA 75 (174)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999987753
No 36
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.60 E-value=4.6e-08 Score=93.25 Aligned_cols=72 Identities=17% Similarity=0.285 Sum_probs=59.3
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 247 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEk 247 (781)
...+|.||. +++|+|||.+|+|||+|+++|||+|.|..+.... ...+-.|.|+|.. +.
T Consensus 104 ~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---------------~~~~~~v~I~G~~-~~ 161 (178)
T 2anr_A 104 NQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI---------------NLQNRVVTVSGEP-EQ 161 (178)
T ss_dssp GEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------------------CCEEEEEEESSH-HH
T ss_pred eEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC---------------CCCceEEEEEcCH-HH
Confidence 467999998 5999999999999999999999999998763100 1233589999975 89
Q ss_pred HHHHHHHHHhhccc
Q 003989 248 VDAATDLIELLVTS 261 (781)
Q Consensus 248 VdkAvelIE~LL~p 261 (781)
+++|+++|+++|.+
T Consensus 162 v~~A~~~I~~~i~e 175 (178)
T 2anr_A 162 NRKAVELIIQKIQE 175 (178)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 37
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.50 E-value=1.2e-08 Score=118.38 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCC
Q 003989 137 ECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADT 216 (781)
Q Consensus 137 ekLEeER~~IIe~mlkliP~frPPsDYkP~~K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k 216 (781)
+...+.|.+|++.|.+.+......++|.|. +.+|.||.+ +||.||||+|++||.|+++||++|.|.++|
T Consensus 569 ~~A~~~~~~I~~~m~~al~~~~~~~~~ap~--~~~~~I~~~------ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG--- 637 (757)
T 1e3p_A 569 KQARDARLHILDVMMEAIDTPDEMSPNAPR--IITVKIPVD------KIGEVIGPKRQMINQIQEDTGAEITIEDDG--- 637 (757)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCCCCTTSCB--CCCC------------------------CTTCCCCCSCC---------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCce--eEEEEEChH------HeehcccccceeeehhhHhhCCEEEecCCc---
Confidence 556788999999999998777336778776 788889995 999999999999999999999999998765
Q ss_pred CcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhc
Q 003989 217 GEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLV 259 (781)
Q Consensus 217 ~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL 259 (781)
.|+|++.+.+++++|.++|+.|+
T Consensus 638 --------------------~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 638 --------------------TIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ----------------------CCCBSSHHHHCC---------
T ss_pred --------------------eEEEecCCHHHHHHHHHHHHHhc
Confidence 57888999999999999999987
No 38
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.48 E-value=9.9e-08 Score=89.35 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=58.9
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHH
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEK 247 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEk 247 (781)
...++.||. +++|+|||++|+++|+|+++|||+|.|...|+ .+-.|.|+|. .+.
T Consensus 5 ~~~~~~vp~------~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~-------------------~~r~v~I~G~-~~~ 58 (160)
T 2jzx_A 5 LTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC-------------------PERIITLAGP-TNA 58 (160)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT-------------------TEEEEEEEEE-HHH
T ss_pred EEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEcCCCC-------------------CceEEEEEeC-HHH
Confidence 367899998 49999999999999999999999999987642 1237889997 899
Q ss_pred HHHHHHHHHhhcccc
Q 003989 248 VDAATDLIELLVTSV 262 (781)
Q Consensus 248 VdkAvelIE~LL~pv 262 (781)
+++|+++|.+++.+.
T Consensus 59 v~~A~~~I~~~i~e~ 73 (160)
T 2jzx_A 59 IFKAFAMIIDKLEED 73 (160)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887653
No 39
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.48 E-value=1.5e-07 Score=88.39 Aligned_cols=71 Identities=20% Similarity=0.134 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||. +++|+|||.+|+|+|+|+++|||+|.|...+.. ...+-.|.|+| +.+.+
T Consensus 4 ~~~~~ip~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~----------------~~~~r~v~I~G-~~e~v 60 (163)
T 3krm_A 4 MVQVFIPA------QAVGAIIGKKGQHIKQLSRFASASIKIAPPETP----------------DSKVRMVIITG-PPEAQ 60 (163)
T ss_dssp EEEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCEEEECCCSST----------------TCSEEEEEEEE-CHHHH
T ss_pred EEEEEech------hhcceeECCCcHHHHHHHHHHCCeEEEcCCCCC----------------CCCceEEEEEc-CHHHH
Confidence 56888998 499999999999999999999999999876421 12334799999 89999
Q ss_pred HHHHHHHHhhcccc
Q 003989 249 DAATDLIELLVTSV 262 (781)
Q Consensus 249 dkAvelIE~LL~pv 262 (781)
++|+.+|..++.+.
T Consensus 61 ~~A~~~I~~~~~e~ 74 (163)
T 3krm_A 61 FKAQGRIYGKLKEE 74 (163)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988765
No 40
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.48 E-value=1.3e-07 Score=90.17 Aligned_cols=75 Identities=25% Similarity=0.210 Sum_probs=60.1
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..+|.||. +++|+|||.+|++||+|+++|||+|.|...+... . ...+-.|.|+|. .+.+
T Consensus 7 ~~~i~vp~------~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~-------------~-~~~er~v~I~G~-~~~v 65 (178)
T 2anr_A 7 FLKVLIPS------YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY-------------P-GTTERVCLIQGT-IEAL 65 (178)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC-------------T-TSSEEEEEEEEC-HHHH
T ss_pred EEEEEECh------hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC-------------C-CCCCceEEEEeC-HHHH
Confidence 57889998 4999999999999999999999999997654110 0 122346889995 8899
Q ss_pred HHHHHHHHhhcccccc
Q 003989 249 DAATDLIELLVTSVSG 264 (781)
Q Consensus 249 dkAvelIE~LL~pve~ 264 (781)
++|+++|++++.....
T Consensus 66 ~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 66 NAVHGFIAEKIREMPQ 81 (178)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhccCC
Confidence 9999999999977543
No 41
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.00 E-value=6.4e-06 Score=77.59 Aligned_cols=74 Identities=12% Similarity=0.270 Sum_probs=57.7
Q ss_pred EEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCC-eEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 170 AVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRT-VIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 170 ~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGA-KI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
..|+||. +.+|++||-+|.|+|.|+++||| +|.|.+..... ....++.--|.|+| +.+++
T Consensus 69 ~~v~Vp~------~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~------------~~~~~~~~~vtI~G-~~~~v 129 (144)
T 2qnd_A 69 DVIQVPR------NLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN------------VPQEEGMVPFVFVG-TKDSI 129 (144)
T ss_dssp EEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC------------CCCCTTEEEEEEEE-EHHHH
T ss_pred EEEEECH------HHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC------------ccccCCeeEEEEEe-CHHHH
Confidence 7888888 59999999999999999999997 99998764110 00111223478888 78899
Q ss_pred HHHHHHHHhhcccc
Q 003989 249 DAATDLIELLVTSV 262 (781)
Q Consensus 249 dkAvelIE~LL~pv 262 (781)
++|+++|+.+|...
T Consensus 130 ~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 130 ANATVLLDYHLNYL 143 (144)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998653
No 42
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.95 E-value=6.4e-06 Score=83.16 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=48.9
Q ss_pred ccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhcccc
Q 003989 184 FLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSV 262 (781)
Q Consensus 184 FIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL~pv 262 (781)
.+|+|||.+|+|+|.||+.|||+|.|.|+ .|.|.| +.+.++.|.++|+.||...
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~~------------------------~v~i~G-~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYGK------------------------TVAIIG-NPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEETT------------------------EEEEEE-CHHHHHHHHHHHHHHHTTC
T ss_pred hhheeECCCchHHHHHHHHhCceEEECCe------------------------EEEEEe-CHHHHHHHHHHHHHHHcCC
Confidence 59999999999999999999999999764 588888 7889999999999999653
No 43
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.82 E-value=2.2e-05 Score=70.64 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=58.4
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHH-hCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHH
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKE-TRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYE 246 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeE-TGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteE 246 (781)
...+|.||.+ |-+.|||.+|.|+|+|+++ ++|+|.+-... -.|.|.|. .+
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~~----------------------~~ItI~G~-~~ 77 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEFTEGE----------------------DKITLEGP-TE 77 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEECSSS----------------------CEEEEEEC-HH
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEeCCCC----------------------CEEEEECC-HH
Confidence 3578899985 8899999999999999997 58999876510 06999998 88
Q ss_pred HHHHHHHHHHhhccccccch
Q 003989 247 KVDAATDLIELLVTSVSGSL 266 (781)
Q Consensus 247 kVdkAvelIE~LL~pve~g~ 266 (781)
.|++|+++|+.|+++.+...
T Consensus 78 ~V~~a~~~I~~~v~el~~~~ 97 (102)
T 2ctf_A 78 DVSVAQEQIEGMVKDLINRS 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998766543
No 44
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.78 E-value=1.6e-05 Score=78.93 Aligned_cols=53 Identities=30% Similarity=0.433 Sum_probs=48.1
Q ss_pred ccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhccc
Q 003989 184 FLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTS 261 (781)
Q Consensus 184 FIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL~p 261 (781)
.+|+|||++|+|+|.||..|||+|.|.|+ .|.|.| +.+.++.|.+.|+.||..
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~------------------------~v~i~G-~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGEY------------------------EVAIIG-DYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSS------------------------EEEEEE-EHHHHHHHHHHHHHHHTT
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcCC------------------------EEEEEe-ChHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999876 577777 788999999999999964
No 45
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=97.24 E-value=0.00049 Score=74.65 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=55.4
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCc--hhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCH
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPAS--DTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSY 245 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrG--nTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdte 245 (781)
...++.||.+ |.+.|||.+| .+||+|.+||||+|.+=+++... .. . ....=-|.|+| ..
T Consensus 30 VTl~v~Ip~~------~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~--~~--------~--~~ks~~VtItG-~~ 90 (376)
T 3n89_A 30 VTLNMEFESQ------YYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGG--TT--------P--DPFAQQVTITG-YF 90 (376)
T ss_dssp EEEEEECCGG------GHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCS--SS--------C--CTTTTEEEEEE-EH
T ss_pred EEEEEEEchh------hhhhhccCCChHHHHHHHHHHhCCeEECCCCcccc--cC--------C--cCCCCeEEEEc-CH
Confidence 3578888884 8999999999 99999999999999997654100 00 0 00011589999 57
Q ss_pred HHHHHHHHHHHhhc
Q 003989 246 EKVDAATDLIELLV 259 (781)
Q Consensus 246 EkVdkAvelIE~LL 259 (781)
++|++|.++|..|+
T Consensus 91 enVE~AR~~I~~l~ 104 (376)
T 3n89_A 91 GDVDRARMLMRRNC 104 (376)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999863
No 46
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=97.22 E-value=0.00044 Score=75.02 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc-cEEEEEcCCCCCCCCcccceeeCCCc--hhHHHHHHHhCCeEEEeC
Q 003989 135 KLECLELEKQEVIGEILKLNPSYRTPPDYKPLL-KEAVVPIPVKEYPGYNFLGLIFGPAS--DTQKRLEKETRTVIKVYG 211 (781)
Q Consensus 135 ~rekLEeER~~IIe~mlkliP~frPPsDYkP~~-K~~KIyIPvkeyP~~NFIGlIIGPrG--nTiKrLEeETGAKI~IRG 211 (781)
..+++++++..|++++.+. .++... ...+|-|+.+ ++..|||-+| .+||+|.+||||+|.+-.
T Consensus 160 nv~~akeA~~~Ll~~l~~~--------e~~~~~~~s~~v~V~~~------~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~ 225 (376)
T 3n89_A 160 NQHELIEAAKRLNEILFRE--------SPAPENNFTLHFTLSTY------YVDQVLGSSSTAQLMPVIERETTTIISYPC 225 (376)
T ss_dssp GHHHHHHHHHHHHHHHCC----------CCCSSCEEEEEEEEGG------GHHHHTCCTTSCCHHHHHHHHHTCEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhh--------hcccccceEEEEEeCHH------HHHHhhcCCCcchHHHHHHHhhCCEEECCC
Confidence 3567888988899888554 111111 2456667664 8899999999 667999999999999977
Q ss_pred CccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhc
Q 003989 212 TKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLV 259 (781)
Q Consensus 212 kGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL 259 (781)
++...+. ..+.-.|.|+| +.|+|++|.++|+.||
T Consensus 226 ~~d~~d~-------------~~~~~~ItItG-s~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 226 YNNRNET-------------RGNIYEIKVVG-NIDNVLKARRYIMDLL 259 (376)
T ss_dssp ---------------------CCEEEEEEES-CHHHHHHHHHHHHHTS
T ss_pred CCCcccc-------------cCCceEEEEEe-CHHHHHHHHHHHHhhC
Confidence 6532110 01123799999 9999999999999986
No 47
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=96.66 E-value=0.0019 Score=64.23 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=54.6
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEE----ecC
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISIS----ADS 244 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIs----Adt 244 (781)
..+|.||. +-+|.|||-.|+++|.|++++||+|.|..+. + -|.|. ..|
T Consensus 5 ~~~i~VP~------~rvg~liGk~g~~~k~i~e~~g~~i~id~~~----~------------------~V~i~t~~~t~d 56 (191)
T 1tua_A 5 RIYVKVKP------ERLGAVIGPRGEVKAEIMRRTGTVITVDTEN----S------------------MVIVEPEAEGIP 56 (191)
T ss_dssp CEEEECCG------GGHHHHHCGGGHHHHHHHHHHTEEEEEETTT----T------------------EEEEEESSTTSC
T ss_pred ceEEECCH------HHhhHHHhcCHhHHHHHHHHHCcEEEEEcCC----C------------------eEEEEeCCCCCC
Confidence 36899998 5999999999999999999999999997641 1 23444 246
Q ss_pred HHHHHHHHHHHHhhcccccc
Q 003989 245 YEKVDAATDLIELLVTSVSG 264 (781)
Q Consensus 245 eEkVdkAvelIE~LL~pve~ 264 (781)
.+.+.+|.++|+.|...+..
T Consensus 57 p~~i~KA~dlI~ai~rgf~~ 76 (191)
T 1tua_A 57 PVNLMKAAEVVKAISLGFPP 76 (191)
T ss_dssp HHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 78999999999887765543
No 48
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=96.62 E-value=0.0012 Score=62.20 Aligned_cols=60 Identities=12% Similarity=0.218 Sum_probs=45.3
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHH
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKV 248 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkV 248 (781)
.+++.||.+ ++|++||.+|.++|+|++|+| |.|-.-. +++-.+.+.+-+.+++
T Consensus 5 ~~~~~Vp~~------~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-------------------~~~~~~i~~~~~p~~v 57 (144)
T 2qnd_A 5 HEQFIVRED------LMGLAIGTHGANIQQARKVPG--VTAIDLD-------------------EDTCTFHIYGEDQDAV 57 (144)
T ss_dssp EEEEECCGG------GHHHHHCGGGHHHHHHHTSTT--EEEEEEE-------------------TTTTEEEEEESSHHHH
T ss_pred EEEEEECCc------ceeeEECCChhHHHHHHHHHC--CeEeccC-------------------CCchheeeccCCHHHH
Confidence 578999984 999999999999999999999 4442211 1112466788888888
Q ss_pred HHHHHHH
Q 003989 249 DAATDLI 255 (781)
Q Consensus 249 dkAvelI 255 (781)
++|.+++
T Consensus 58 ~~~~~~l 64 (144)
T 2qnd_A 58 KKARSFL 64 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8886654
No 49
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=95.49 E-value=0.022 Score=54.47 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCCccEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCC
Q 003989 154 NPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTY 233 (781)
Q Consensus 154 iP~frPPsDYkP~~K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~ 233 (781)
+|-+..+.+++.+ ..+||.. ..+|.||||+|..|+.||..|+++|.|.--.+.
T Consensus 45 ~PwW~~~e~L~dP---lVF~vE~------~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~------------------ 97 (140)
T 3v69_A 45 LPKWFHVECLEDP---KRLYVEP------RLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPE------------------ 97 (140)
T ss_dssp CCTTCCGGGGSSC---EEEEECG------GGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTT------------------
T ss_pred CCCccCHHHCCCC---eEEEEeh------hhhhcccCCCcCccchHHhhcceeEEEeccCCC------------------
Confidence 3445555555554 6778877 599999999999999999999999999843221
Q ss_pred CceEEEEEecCHHHHHHHHHHHHhhcc
Q 003989 234 EEFHISISADSYEKVDAATDLIELLVT 260 (781)
Q Consensus 234 EpLHVlIsAdteEkVdkAvelIE~LL~ 260 (781)
..--|.|.|....+ .+|+.+|++|..
T Consensus 98 g~tEVtIfG~~~~Q-~rak~MI~sLA~ 123 (140)
T 3v69_A 98 RRAEIWIFGPPPFR-RDVDRMLTDLAH 123 (140)
T ss_dssp SCEEEEEESCHHHH-HHHHHHHHHHHH
T ss_pred CcEEEEEECCHHHH-HHHHHHHHHHHH
Confidence 11258888865544 446677776654
No 50
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=83.03 E-value=1.9 Score=43.61 Aligned_cols=53 Identities=19% Similarity=0.170 Sum_probs=42.6
Q ss_pred cccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhh
Q 003989 183 NFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELL 258 (781)
Q Consensus 183 NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~L 258 (781)
+++.+++|++|..++.|.++++|+|.|=-.| .|+|.+.+.+.+..+.+.|+.+
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~vG~NG-----------------------~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFVARNG-----------------------RIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEEETTT-----------------------EEEEECSCHHHHHHHHHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEEeCCC-----------------------EEEEecCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999999994333 7999998877666555555554
No 51
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=77.30 E-value=1.4 Score=42.23 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=28.3
Q ss_pred cccceeeCCCchhHHHHHHHhCCeEEEeCCc
Q 003989 183 NFLGLIFGPASDTQKRLEKETRTVIKVYGTK 213 (781)
Q Consensus 183 NFIGlIIGPrGnTiKrLEeETGAKI~IRGkG 213 (781)
+.+|+.||++|..+|.|++|.|-||.|-.--
T Consensus 45 g~vGa~IG~~G~ri~~i~~elgekIdIV~~s 75 (144)
T 2cxc_A 45 GEAGRAIGRGGRLIKLLREALGKNIEVVEYS 75 (144)
T ss_dssp TCHHHHHCGGGHHHHHHHHHHSSEEEEEECC
T ss_pred CCccccCccCchHHHHHHHHhCCeeEEEEcC
Confidence 4699999999999999999999999888753
No 52
>2jpi_A Hypothetical protein; alpha-helix/beta-sheet, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Pseudomonas aeruginosa}
Probab=71.70 E-value=4.5 Score=37.43 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=51.7
Q ss_pred chhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCC--ccCCCCceEEEEEecCHHHHHHHHHHHHhhcccccc
Q 003989 193 SDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDAN--VQSTYEEFHISISADSYEKVDAATDLIELLVTSVSG 264 (781)
Q Consensus 193 GnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~--~~~~~EpLHVlIsAdteEkVdkAvelIE~LL~pve~ 264 (781)
...+|+|++..+-||.+...+. ...+....|. ....++-|.|.|+|.+++.|+.....|..-|.....
T Consensus 36 sryl~qLc~H~~hK~~ve~d~~----~g~i~fp~G~~~l~a~~~~L~i~v~A~d~e~L~~lk~VVa~HL~rFa~ 105 (118)
T 2jpi_A 36 ARYVNRLCKHWGHKFEVELTPE----RGFIDFGDSNCELLAHPDHVLMILNSPDEDSLAHMQNVVADHLQRMAN 105 (118)
T ss_dssp HHHHHHHHHHTTTSSEEEECSS----EEEEECSSSCEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHhhCCceEcCC----ceEEEeCCeEEEEEecCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence 4569999999999988877642 2233333333 445677899999999999999999999998887643
No 53
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=67.52 E-value=4.8 Score=40.62 Aligned_cols=51 Identities=24% Similarity=0.178 Sum_probs=38.8
Q ss_pred cccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCH--HHHHHHHHHHH
Q 003989 183 NFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSY--EKVDAATDLIE 256 (781)
Q Consensus 183 NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdte--EkVdkAvelIE 256 (781)
+++.+|||+++..++.|.++++|+|.|==.| .|+|.+++. ..+.+|+++||
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG-----------------------~IWi~~~~~~~~~~~~ai~~~e 197 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVVGQNG-----------------------LIWVNGDRRKVSIAEEAIYLIE 197 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEECTTS-----------------------EEEEESCHHHHHHHHHHHHHHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEEECCc-----------------------EEEEeCCchhHHHHHHHHHHHH
Confidence 6889999999999999999999999983333 788987655 34444555554
No 54
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=62.63 E-value=19 Score=32.54 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=39.5
Q ss_pred chhHHHHHHHh-CCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhccccc
Q 003989 193 SDTQKRLEKET-RTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSVS 263 (781)
Q Consensus 193 GnTiKrLEeET-GAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL~pve 263 (781)
=+++..|+.++ +..|.||-.|. ..-++|++.|.+++.+++.++.+.++|....
T Consensus 44 ~~~idgl~~~~~~gwvlvRpSGT------------------EP~irvy~Ea~~~~~~~~~~~~~~~~i~~~~ 97 (112)
T 1wjw_A 44 QEAINDLVKKYTLARAFVRPSGT------------------EDIVRVYAEANSQESADRLAYEVSLLVFQLA 97 (112)
T ss_dssp HHHHHHHHHHSSSEEEEEECSSS------------------SSSEEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhcEEEEcCCcEEEEEeCCC------------------ccEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 35677777775 45788988873 2237999999999988888888877776543
No 55
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=54.49 E-value=4.5 Score=44.01 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=35.9
Q ss_pred EEEEcCCCCCCCCcccceeeCCCchhHHHHHHHh-CCeEEEeCC
Q 003989 170 AVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKET-RTVIKVYGT 212 (781)
Q Consensus 170 ~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeET-GAKI~IRGk 212 (781)
.||-+=.. .+++|-||..||++|..+|.|.+|. |-||.|-.-
T Consensus 237 aKIAV~s~-d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~ 279 (366)
T 1k0r_A 237 SKIAVRSN-VAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDY 279 (366)
T ss_dssp EEEEEEES-STTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC
T ss_pred EEEEEEeC-CCCCCCcccccCCcchHHHHHHHHhCCCeEEEEEc
Confidence 56655433 5789999999999999999999999 999999875
No 56
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=54.28 E-value=6.1 Score=37.96 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHH-HHHh--------CC---eEEEeCCc
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRL-EKET--------RT---VIKVYGTK 213 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrL-EeET--------GA---KI~IRGkG 213 (781)
.++|.||.+ ++|.+|| ++|+++ ++++ |+ +|.|...|
T Consensus 8 ~~~i~I~P~------~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~g 55 (187)
T 1go3_E 8 ADVVKVPPE------EFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKDIG 55 (187)
T ss_dssp EEEEEECGG------GTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEEEC
T ss_pred EEEEEECHH------HhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEeecc
Confidence 578999995 8899998 899995 9999 97 78888754
No 57
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=52.42 E-value=1.5 Score=44.96 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=23.7
Q ss_pred cccceeeCCCchhHHHHHHHhCCeEEEeCCc
Q 003989 183 NFLGLIFGPASDTQKRLEKETRTVIKVYGTK 213 (781)
Q Consensus 183 NFIGlIIGPrGnTiKrLEeETGAKI~IRGkG 213 (781)
+++.+|||+++..++.|.++++|.|.|-=.|
T Consensus 164 ~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG 194 (251)
T 2je6_I 164 VKVPRVIGKNKSMYETLTSKSGCSIFVANNG 194 (251)
T ss_dssp GGHHHHHCGGGHHHHHHHTTC---CEECTTS
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEEECCc
Confidence 5888999999999999999999999883333
No 58
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=47.73 E-value=6.4 Score=41.44 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=42.4
Q ss_pred cccceeeCCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhh
Q 003989 183 NFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELL 258 (781)
Q Consensus 183 NFIGlIIGPrGnTiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~L 258 (781)
+++-+|||+++..++.|.++++|+|.|==.| .|+|.+.+.+..-.+.+.|+++
T Consensus 219 ~lvrrl~~~~~~~l~~L~~~~~~eI~vG~NG-----------------------~IWI~~~~~~~~~~i~~aI~~~ 271 (289)
T 2nn6_G 219 GLIRKLLAPDCEIIQEVGKLYPLEIVFGMNG-----------------------RIWVKAKTIQQTLILANILEAC 271 (289)
T ss_dssp HHHHHHHCTTCSHHHHTTCSSSCCCEEETTT-----------------------EEEECCSSHHHHHHHHHHHHHT
T ss_pred HHhhhhhcCchhHHHHhcccCCeEEEEECCc-----------------------EEEEecCChhHHHHHHHHHHHh
Confidence 6888999999999999998999999875444 7999998887666555555554
No 59
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=47.56 E-value=12 Score=35.19 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=17.6
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003989 194 DTQKRLEKETRTVIKVYGTK 213 (781)
Q Consensus 194 nTiKrLEeETGAKI~IRGkG 213 (781)
+.||+||+|.|+++-+|.++
T Consensus 34 ~~i~~LE~~lg~~Lf~R~~~ 53 (291)
T 3szp_A 34 RRIQALEDSLNLRLLNRHAR 53 (291)
T ss_dssp HHHHHHHHHHTCCCEEEETT
T ss_pred HHHHHHHHHhCCceEeecCC
Confidence 46899999999999999753
No 60
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=47.52 E-value=6.3 Score=40.95 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccEEEEEcCCCCCCCCcccceeeCCCchhHHHH-HHHhCCeEEEeCC
Q 003989 136 LECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRL-EKETRTVIKVYGT 212 (781)
Q Consensus 136 rekLEeER~~IIe~mlkliP~frPPsDYkP~~K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrL-EeETGAKI~IRGk 212 (781)
++.+|.|=-+|-+-+.++.-..|.| -...||-+=.. .+++|-||..||++|..++.| ++-.|-||.|-.-
T Consensus 86 k~Lfe~EVPEI~dG~veI~~iaRe~------G~R~KiAV~s~-d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~ 156 (251)
T 2asb_A 86 RKLFSLEVPEIADGSVEIVAVAREA------GHRSKIAVRSN-VAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDY 156 (251)
T ss_dssp HHHHHHHCHHHHTTSEEEEEEEEET------TTEEEEEEEES-STTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHhcchHhhcCeEEEEEEecCC------CceeEEEEEcC-CCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEEe
Confidence 4455555555554444433222211 01346655443 378999999999999999999 6667999999875
No 61
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=46.66 E-value=92 Score=30.96 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=17.6
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhhc
Q 003989 237 HISIS-ADSYEKVDAATDLIELLV 259 (781)
Q Consensus 237 HVlIs-AdteEkVdkAvelIE~LL 259 (781)
++.|+ +.++|.|+++++.|+++|
T Consensus 359 ~iRi~~~~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 359 HIGINIGCPRSVLEEILNRLRHTF 382 (383)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHh
Confidence 44443 357899999999999876
No 62
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=46.52 E-value=13 Score=35.96 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=17.5
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003989 194 DTQKRLEKETRTVIKVYGTK 213 (781)
Q Consensus 194 nTiKrLEeETGAKI~IRGkG 213 (781)
+.||+||+|.|+++-+|...
T Consensus 43 ~~I~~LE~~lg~~Lf~R~~~ 62 (310)
T 2esn_A 43 HALGRLRQGLDDELFLRQGN 62 (310)
T ss_dssp HHHHHHHHHHTSCCEEEETT
T ss_pred HHHHHHHHhhCCcceeecCC
Confidence 46899999999999999753
No 63
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=42.98 E-value=18 Score=34.89 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=18.0
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003989 194 DTQKRLEKETRTVIKVYGTK 213 (781)
Q Consensus 194 nTiKrLEeETGAKI~IRGkG 213 (781)
+.||+||+|.|+++-+|++|
T Consensus 39 ~~i~~LE~~lg~~Lf~R~~~ 58 (303)
T 3isp_A 39 QRIKSLEQQVGQVLVVREKP 58 (303)
T ss_dssp HHHHHHHHHHTSCCEECSSS
T ss_pred HHHHHHHHHhCCeeEEcCCC
Confidence 46899999999999999864
No 64
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=39.08 E-value=15 Score=35.22 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=17.7
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003989 194 DTQKRLEKETRTVIKVYGTK 213 (781)
Q Consensus 194 nTiKrLEeETGAKI~IRGkG 213 (781)
+.||+||++.|+++-+|.+.
T Consensus 36 ~~i~~LE~~lg~~Lf~R~~~ 55 (306)
T 3hhg_A 36 RIVKRLEEKLGVNLLNRTTR 55 (306)
T ss_dssp HHHHHHHHHHTSCCEETTSS
T ss_pred HHHHHHHHHhCCeeEeecCC
Confidence 46899999999999999754
No 65
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=38.72 E-value=2.2e+02 Score=27.97 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=21.5
Q ss_pred EEEEEecCHHHHHHHHHHHHhhccc
Q 003989 237 HISISADSYEKVDAATDLIELLVTS 261 (781)
Q Consensus 237 HVlIsAdteEkVdkAvelIE~LL~p 261 (781)
+|.|+-.+++.++++++.|+++++.
T Consensus 327 ~iRis~~~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 327 WCRISLGTPQEMQWVADTMREFRKK 351 (354)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 7777777899999999999998864
No 66
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=37.91 E-value=89 Score=31.62 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=20.6
Q ss_pred EEEEEe----cCHHHHHHHHHHHHhhcccc
Q 003989 237 HISISA----DSYEKVDAATDLIELLVTSV 262 (781)
Q Consensus 237 HVlIsA----dteEkVdkAvelIE~LL~pv 262 (781)
+|.|+- .++|.++++++.|++++...
T Consensus 373 ~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 373 IMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp EEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 556662 48999999999999998753
No 67
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=36.58 E-value=27 Score=34.14 Aligned_cols=52 Identities=15% Similarity=0.035 Sum_probs=39.2
Q ss_pred cccceeeCCCch-hHHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHh
Q 003989 183 NFLGLIFGPASD-TQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIEL 257 (781)
Q Consensus 183 NFIGlIIGPrGn-TiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~ 257 (781)
+++-+|||-+|. .++.|.++++|+|.|==.| .|+|.+.+.+..-.+.+.|+.
T Consensus 100 ~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG-----------------------~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 100 NFARQLLFNNDFPLLKVLAAHTKFEVAIGLNG-----------------------KIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp HHHHHHHHCTTCCHHHHHHTTCCCEEEEETTT-----------------------EEEEECSSHHHHHHHHHHHHH
T ss_pred HHhhHHhcCCCcchHHhhhccCCeEEEEECCc-----------------------EEEEecCCHHHHHHHHHHHHH
Confidence 688999995555 9999999999999885444 799999887655444444444
No 68
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=36.19 E-value=14 Score=39.82 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=34.7
Q ss_pred EEEEcCCCCCCCCcccceeeCCCchhHHHHHHHh-CCeEEEeCC
Q 003989 170 AVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKET-RTVIKVYGT 212 (781)
Q Consensus 170 ~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeET-GAKI~IRGk 212 (781)
.||-+=-. .+++|-+|..||++|..++.+.+|. |-||.|=.-
T Consensus 233 ~KiAV~s~-d~~iDpvGacvg~~G~ri~~i~~el~ge~Idii~~ 275 (344)
T 1hh2_P 233 TKVAVASN-DPNVDPIGACIGEGGSRIAAILKELKGEKLDVLKW 275 (344)
T ss_dssp EEEEEEES-STTSCHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC
T ss_pred cceeEEcc-CCCccccceeeccCCcEeHHHHHHhCCCeeeEEec
Confidence 45555443 4789999999999999999999999 888888664
No 69
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=35.97 E-value=22 Score=34.51 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=17.8
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003989 194 DTQKRLEKETRTVIKVYGTK 213 (781)
Q Consensus 194 nTiKrLEeETGAKI~IRGkG 213 (781)
+.||+||++.|+++-+|...
T Consensus 35 ~~i~~LE~~lg~~Lf~R~~r 54 (305)
T 3fxq_A 35 AAIQQLEDELKAPLLVRTKR 54 (305)
T ss_dssp HHHHHHHHHHTSCSEEECSS
T ss_pred HHHHHHHHHhCCeeEEecCC
Confidence 56999999999999999764
No 70
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=35.53 E-value=30 Score=36.61 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=35.6
Q ss_pred HHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhccc
Q 003989 196 QKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTS 261 (781)
Q Consensus 196 iKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL~p 261 (781)
.+++-+.-|+++.+.|| ..+.+.+ =.||.++++|.+.+.+.++.+..+|..
T Consensus 291 ~~~~~~~p~~~~~~ygk-~~r~~rk--------------mGhv~~~~~~~~~~~~~~~~~~~~~~~ 341 (355)
T 3eth_A 291 NYDWLKLPLVHLHWYDK-EVRPGRK--------------VGHLNLTDSDTSRLTATLEALIPLLPP 341 (355)
T ss_dssp CGGGGGSTTCEEEECCC-CCCTTCE--------------EEEEEEECSCHHHHHHHHHHHGGGSCG
T ss_pred HHHHHhCCCCEEEEcCC-CCCCCCe--------------eEEEEEEcCCHHHHHHHHHHHHHHhhh
Confidence 45555678999999999 4433221 149999999987777666666666654
No 71
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=34.94 E-value=2.2e+02 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=19.5
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhhccc
Q 003989 237 HISIS-ADSYEKVDAATDLIELLVTS 261 (781)
Q Consensus 237 HVlIs-AdteEkVdkAvelIE~LL~p 261 (781)
+|.|+ +.++|.|+++++.|+++|..
T Consensus 350 ~~Ris~~~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 350 FCRLNFATSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 45544 34889999999999998865
No 72
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=33.61 E-value=47 Score=35.16 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=30.4
Q ss_pred HHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhcc
Q 003989 197 KRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVT 260 (781)
Q Consensus 197 KrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL~ 260 (781)
.++-+.-|+++.+.||...+.+.+ =.||.+.|+|.+.+.+.++.+.++++
T Consensus 350 ~~~~~~p~~~~~~ygk~~~~~~rk--------------mGhv~~~~~~~~~~~~~a~~~~~~~~ 399 (403)
T 3k5i_A 350 ECALSIPNASIHLYSKGAAKPGRK--------------MGHITVTAPTMHEAETHIQPLIDVVD 399 (403)
T ss_dssp HHHTTSTTEEEEECCCCSCCTTCE--------------EEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCEEEECCCCCCCCCCe--------------eEEEEEEcCCHHHHHHHHHHHHhhhh
Confidence 344456789999999854332211 14999999987655444444444443
No 73
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=33.35 E-value=11 Score=38.43 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCcccceeeCCCchhHHH--------HHHHhCCeEEEe
Q 003989 170 AVVPIPVKEYPGYNFLGLIFGPASDTQKR--------LEKETRTVIKVY 210 (781)
Q Consensus 170 ~KIyIPvkeyP~~NFIGlIIGPrGnTiKr--------LEeETGAKI~IR 210 (781)
..||+.-+ .-.|.|||-+|..||+ ||+-+||||.++
T Consensus 242 a~i~ve~~-----~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 242 GEIIVDRE-----NLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEESSG-----GGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEccC-----CcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 57777766 5678999999999995 566678887764
No 74
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=31.87 E-value=1.8e+02 Score=28.92 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=20.2
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhhcccc
Q 003989 237 HISIS-ADSYEKVDAATDLIELLVTSV 262 (781)
Q Consensus 237 HVlIs-AdteEkVdkAvelIE~LL~pv 262 (781)
++.|+ +.++|.|+++++.|+++|+..
T Consensus 363 ~iRis~~~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 363 FVRINLACPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 45444 468899999999999988754
No 75
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=30.84 E-value=12 Score=35.94 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=18.4
Q ss_pred cccceeeCCCchhHHHHHHHh
Q 003989 183 NFLGLIFGPASDTQKRLEKET 203 (781)
Q Consensus 183 NFIGlIIGPrGnTiKrLEeET 203 (781)
+-.|+|||-+|.|++.||=-+
T Consensus 42 ed~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 42 EDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp GGGTTTTCGGGHHHHHHHHHH
T ss_pred CCcceEECCCCcchHHHHHHH
Confidence 358999999999999998765
No 76
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=30.31 E-value=11 Score=36.08 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeC
Q 003989 169 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYG 211 (781)
Q Consensus 169 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRG 211 (781)
...++++.+ -.++.||-+|.++|-..+-||++|.|+.
T Consensus 104 ~~~V~V~~~------q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 104 QVVIKVSED------DKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp EEEEEECTT------THHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred EEEEEEChH------HhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 456677774 5799999999999999999999998864
No 77
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=29.58 E-value=13 Score=35.38 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=14.9
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003989 194 DTQKRLEKETRTVIKVYGTK 213 (781)
Q Consensus 194 nTiKrLEeETGAKI~IRGkG 213 (781)
+.||+||+|.|+++-+|...
T Consensus 34 ~~i~~LE~~lg~~Lf~R~~~ 53 (294)
T 1ixc_A 34 RQMQALEADLGVVLLERSHR 53 (294)
T ss_dssp HHHHHHHHHHTSCCBC----
T ss_pred HHHHHHHHHHCCEEEEeCCC
Confidence 46899999999999999754
No 78
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=28.38 E-value=2.9e+02 Score=27.21 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=18.4
Q ss_pred EEEEEe---cCHHHHHHHHHHHHhhcc
Q 003989 237 HISISA---DSYEKVDAATDLIELLVT 260 (781)
Q Consensus 237 HVlIsA---dteEkVdkAvelIE~LL~ 260 (781)
++.|+- .++|.++++++.|+++|+
T Consensus 370 ~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 370 ALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 455553 389999999999999875
No 79
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=28.16 E-value=2.2e+02 Score=28.59 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=18.5
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhhcc
Q 003989 237 HISIS-ADSYEKVDAATDLIELLVT 260 (781)
Q Consensus 237 HVlIs-AdteEkVdkAvelIE~LL~ 260 (781)
+|.|+ +.++|.|+++++.|+++|+
T Consensus 372 ~iRis~~~~~~~i~~~l~~l~~~l~ 396 (396)
T 3jtx_A 372 YVRIALVADVATCVKAAEDIVSLYR 396 (396)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHCC
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHhC
Confidence 55554 3489999999999998763
No 80
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=27.02 E-value=19 Score=34.57 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=13.0
Q ss_pred hhHHHHHHHhCCeEEEeC
Q 003989 194 DTQKRLEKETRTVIKVYG 211 (781)
Q Consensus 194 nTiKrLEeETGAKI~IRG 211 (781)
+.||+||++.|+++-+|.
T Consensus 37 ~~i~~LE~~lg~~Lf~R~ 54 (306)
T 3fzv_A 37 TAVKGLEESFGVQLFIRH 54 (306)
T ss_dssp HHHHHHHHHC-CCCC---
T ss_pred HHHHHHHHHhCCeeEeec
Confidence 569999999999999993
No 81
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=26.16 E-value=14 Score=34.88 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003989 194 DTQKRLEKETRTVIKVYGTK 213 (781)
Q Consensus 194 nTiKrLEeETGAKI~IRGkG 213 (781)
+.||+||++.|+++-+|+.+
T Consensus 31 ~~i~~LE~~lg~~Lf~R~~~ 50 (300)
T 3mz1_A 31 NLIQGLEAHLRTKLLNRTTR 50 (300)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhCCeeEecCCC
Confidence 46899999999999999753
No 82
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=25.84 E-value=14 Score=36.08 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003989 194 DTQKRLEKETRTVIKVYGTK 213 (781)
Q Consensus 194 nTiKrLEeETGAKI~IRGkG 213 (781)
+.||+||+|.|+++-+|...
T Consensus 34 ~~I~~LE~~lg~~Lf~R~~r 53 (312)
T 2h9b_A 34 RQIQNLEEELGIQLLERGSR 53 (312)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhCCEeEeeCCC
Confidence 46899999999999999753
No 83
>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein damage, autophosphatase, transferase; 1.00A {Escherichia coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A* 1poh_A 1vrc_C 2jel_P 2xdf_C 3eza_B 3ezb_B 3eze_B 1opd_A
Probab=25.59 E-value=1e+02 Score=26.41 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=34.2
Q ss_pred hHHHHHHHhCCeEEEeCCccCCCcchhcccCCCC-ccCCCCceEEEEEecCHHHHHHHHHHHHhhccc
Q 003989 195 TQKRLEKETRTVIKVYGTKADTGEKVEISTSDAN-VQSTYEEFHISISADSYEKVDAATDLIELLVTS 261 (781)
Q Consensus 195 TiKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~-~~~~~EpLHVlIsAdteEkVdkAvelIE~LL~p 261 (781)
-+-++-+++.|+|.|+-.|..-+.|+-..- -. .....+.+.|.+.|+|++ +|++.|+++|..
T Consensus 21 ~~v~~a~~f~s~I~i~~~~~~vnaKSim~l--m~Lg~~~G~~i~i~~~G~De~---~A~~~l~~~~~~ 83 (85)
T 3ccd_A 21 QFVKEAKGFTSEITVTSNGKSASAKSLFKL--QTLGLTQGTVVTISAEGEDEQ---KAVEHLVKLMAE 83 (85)
T ss_dssp HHHHHHTTSCSEEEEEETTEEEETTCHHHH--TTSCCCTTCEEEEEEESTTHH---HHHHHHHHHHTT
T ss_pred HHHHHHhhCCCeEEEEECCEEEehHhHHHH--HhCCCCCCCEEEEEEeCCCHH---HHHHHHHHHHHh
Confidence 344566788999999854321111211100 01 223445788888898874 455556666543
No 84
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=25.00 E-value=1.1e+02 Score=32.82 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=21.3
Q ss_pred EEEEEecCHHHHHHHHHHHHhhccccc
Q 003989 237 HISISADSYEKVDAATDLIELLVTSVS 263 (781)
Q Consensus 237 HVlIsAdteEkVdkAvelIE~LL~pve 263 (781)
.+.|+|-++++|+..++.|.+.|+.+.
T Consensus 392 Ris~Agl~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 392 RANMAGLTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp EEEGGGCCHHHHHHHHHHHHHHHC---
T ss_pred EEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence 567778899999999999999998764
No 85
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=24.17 E-value=1.9e+02 Score=29.78 Aligned_cols=26 Identities=15% Similarity=0.001 Sum_probs=19.9
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhhcccc
Q 003989 237 HISIS-ADSYEKVDAATDLIELLVTSV 262 (781)
Q Consensus 237 HVlIs-AdteEkVdkAvelIE~LL~pv 262 (781)
+|.|+ +.++|.|+++++.|+++++.-
T Consensus 414 ~iRis~~~~~e~i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 414 FVRASAFGSRENILEAVRRFKEAYGKR 440 (449)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHC--
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 56665 458999999999999988643
No 86
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=24.15 E-value=3.1e+02 Score=27.83 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=20.2
Q ss_pred EEEEEe---cCHHHHHHHHHHHHhhccc
Q 003989 237 HISISA---DSYEKVDAATDLIELLVTS 261 (781)
Q Consensus 237 HVlIsA---dteEkVdkAvelIE~LL~p 261 (781)
+|.|+- .++|.|+++++.|+++|..
T Consensus 376 ~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 376 IIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 566654 4899999999999998864
No 87
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=23.52 E-value=17 Score=35.97 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003989 194 DTQKRLEKETRTVIKVYGTK 213 (781)
Q Consensus 194 nTiKrLEeETGAKI~IRGkG 213 (781)
+.||+||+|.|+++-+|...
T Consensus 34 ~~I~~LE~~lG~~Lf~R~~r 53 (313)
T 2h98_A 34 RQIQKLEEELGIQLFERGFR 53 (313)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhCCeeEEcCCC
Confidence 46899999999999999854
No 88
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=23.50 E-value=3.4e+02 Score=27.55 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=20.8
Q ss_pred EEEEE-e-cCHHHHHHHHHHHHhhcccc
Q 003989 237 HISIS-A-DSYEKVDAATDLIELLVTSV 262 (781)
Q Consensus 237 HVlIs-A-dteEkVdkAvelIE~LL~pv 262 (781)
++.|+ + .++|.++++++.|+++++..
T Consensus 388 ~iRis~~~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 388 GIRIAACGIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp EEEEEGGGSCHHHHTTHHHHHHHHHHHT
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 56666 3 59999999999999988654
No 89
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=23.19 E-value=86 Score=33.52 Aligned_cols=50 Identities=14% Similarity=0.184 Sum_probs=33.1
Q ss_pred HHHHHHHhCCeEEEeCCccCCCcchhcccCCCCccCCCCceEEEEEecCHHHHHHHHHHHHhhc
Q 003989 196 QKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLV 259 (781)
Q Consensus 196 iKrLEeETGAKI~IRGkGS~k~~K~E~~~~Dg~~~~~~EpLHVlIsAdteEkVdkAvelIE~LL 259 (781)
+.++-+.-|++|.+.||...+.+.+ =.||.++|+|.+.+.+.++.+..+|
T Consensus 365 ~~~~l~~p~~~~~~ygk~~~~~~rk--------------mGhv~~~~~~~~~~~~~a~~~~~~l 414 (419)
T 4e4t_A 365 WDTVAAMPAAHLHLYGKEEARVGRK--------------MGHVNFTAEMRDDAVAAATACAQLL 414 (419)
T ss_dssp HHHHHTSTTEEEEECCCSCCCTTCE--------------EEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEECCCCCCCCCCc--------------eEEEEEEeCCHHHHHHHHHHHHHhc
Confidence 4566677899999999854332111 1499999999876655555444444
No 90
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=23.11 E-value=2.9e+02 Score=28.89 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=17.1
Q ss_pred cCHHHHHHHHHHHHhhcccc
Q 003989 243 DSYEKVDAATDLIELLVTSV 262 (781)
Q Consensus 243 dteEkVdkAvelIE~LL~pv 262 (781)
.++|.|+++++.|+++++..
T Consensus 442 ~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 442 NSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp CCHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 48999999999999998764
No 91
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=22.29 E-value=4.7e+02 Score=26.07 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=22.0
Q ss_pred EEEEEe----cCHHHHHHHHHHHHhhcccccc
Q 003989 237 HISISA----DSYEKVDAATDLIELLVTSVSG 264 (781)
Q Consensus 237 HVlIsA----dteEkVdkAvelIE~LL~pve~ 264 (781)
+|.|+- .++|.|+++++.|+++++....
T Consensus 361 ~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 392 (411)
T 3nnk_A 361 VWRIGTMGYNARKDCVMTTLSALEAVLNYLKF 392 (411)
T ss_dssp EEEEECCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeCccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 666663 4799999999999999886543
No 92
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=22.20 E-value=5.5e+02 Score=25.60 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=19.3
Q ss_pred EEEEEecCHHHHHHHHHHHHhhc
Q 003989 237 HISISADSYEKVDAATDLIELLV 259 (781)
Q Consensus 237 HVlIsAdteEkVdkAvelIE~LL 259 (781)
++.|+-.+++.++++++.+++++
T Consensus 333 ~iRis~~~~~e~~~~~~~l~~~~ 355 (356)
T 1fg7_A 333 CLRITVGTREESQRVIDALRAEQ 355 (356)
T ss_dssp EEEEECCCHHHHHHHHHHHHTCC
T ss_pred eEEEEeCCHHHHHHHHHHHHhhc
Confidence 78888778999999999988765
No 93
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=22.08 E-value=3.3e+02 Score=27.92 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=17.8
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhhcc
Q 003989 237 HISIS-ADSYEKVDAATDLIELLVT 260 (781)
Q Consensus 237 HVlIs-AdteEkVdkAvelIE~LL~ 260 (781)
++.|+ +.++|.|+++++.|+++|+
T Consensus 396 ~iRi~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 396 FARLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHh
Confidence 34443 3588999999999998875
No 94
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=22.06 E-value=2.2e+02 Score=29.25 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=19.5
Q ss_pred EEEEE-e-cCHHHHHHHHHHHHhhcccc
Q 003989 237 HISIS-A-DSYEKVDAATDLIELLVTSV 262 (781)
Q Consensus 237 HVlIs-A-dteEkVdkAvelIE~LL~pv 262 (781)
++.|+ + .++|.|+++++.|+++++..
T Consensus 405 ~iRi~~~~~~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 405 WFRVCFANLPERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 44443 3 38999999999999988653
No 95
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=22.02 E-value=19 Score=35.38 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCeEEEeCCc
Q 003989 194 DTQKRLEKETRTVIKVYGTK 213 (781)
Q Consensus 194 nTiKrLEeETGAKI~IRGkG 213 (781)
+.||+||+|.|+++-+|...
T Consensus 47 ~~I~~LE~~lg~~Lf~R~~r 66 (315)
T 1uth_A 47 NSLKRLRTALNDDLFLRTSK 66 (315)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhCCcceeecCC
Confidence 46899999999999999854
No 96
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=21.83 E-value=2.6e+02 Score=28.29 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=19.3
Q ss_pred EEEEE-ecCHHHHHHHHHHHHhhccc
Q 003989 237 HISIS-ADSYEKVDAATDLIELLVTS 261 (781)
Q Consensus 237 HVlIs-AdteEkVdkAvelIE~LL~p 261 (781)
+|.|+ +.++|.|+++++.|+++++.
T Consensus 396 ~iRis~~~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 396 YIRFCFVKDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 44443 34999999999999998764
No 97
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=21.82 E-value=59 Score=33.82 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=33.2
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCC
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGT 212 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGk 212 (781)
+...++++.+ -.++-||-+|.++|.--+-||++|.|...
T Consensus 184 ~~a~V~V~~~------qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 184 RAARVVVPDF------QLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TEEEEEECGG------GHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred cEEEEEEChH------HhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 3556777763 67999999999999999999999999865
No 98
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=20.71 E-value=52 Score=35.88 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=33.2
Q ss_pred cEEEEEcCCCCCCCCcccceeeCCCchhHHHHHHHhCCeEEEeCC
Q 003989 168 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGT 212 (781)
Q Consensus 168 K~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGk 212 (781)
+...|+++.+ -.++.||-+|.++|..-+-||++|.|+-.
T Consensus 307 ~~a~V~V~~~------qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 307 RAARVVVPDF------QLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TEEEEEECGG------GHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred cEEEEEEChH------HhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 3556777763 67999999999999999999999999865
Done!