BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003990
(781 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 139/356 (39%), Gaps = 73/356 (20%)
Query: 440 DGSKKGTSETWLVDLVNSGNSAILPGCEAIE-VLHKKRRDRNVATGVAFEFQYMGAKDIC 498
DG++ +S +++ +V N +L G A + V RR TGV G
Sbjct: 204 DGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADRR----CTGVDIVDSAFGHTHRL 259
Query: 499 VVESKVTIVACGALSTPNLLKRSGLKNA---------------NIGKNLHLHP--VTMAW 541
++V +++ GA+ TP LL SG+ A +G++L HP V
Sbjct: 260 TARNEV-VLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFE 318
Query: 542 GYFPKTSSSGEW-------PEEKKTSYEGGIMTAMSTTVG-NFGKSGYGAVIQTPALHPG 593
P + S +W P E +M S N + GY P G
Sbjct: 319 AKQPMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGY------PTTENG 372
Query: 594 MFSSLMPWVSGA----DIKLRMCKFSRTAHIFVLARDQGSGTVNSPYSISYQMEAMDEEN 649
SL P V+ A ++LR F RD+ V+ Y E D
Sbjct: 373 F--SLTPNVTHARSRGTVRLRSRDF----------RDKP--MVDPRYFTD--PEGHDMRV 416
Query: 650 LKKGIEKILRILA-AAGAEEIGTHHCKGKIINVKKASSEEFERFVKEESSRPLRDLSTPL 708
+ GI K I A A AE G G V+ + EE + ++++ T
Sbjct: 417 MVAGIRKAREIAAQPAMAEWTGRELSPG----VEAQTDEELQDYIRK----------THN 462
Query: 709 SSAHQMGSCRMG-IDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAI 763
++ H +G+ RMG ++ + S ++ GV GL +AD SV P + VNP +TV I
Sbjct: 463 TAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMI 518
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 138/356 (38%), Gaps = 73/356 (20%)
Query: 440 DGSKKGTSETWLVDLVNSGNSAILPGCEAIE-VLHKKRRDRNVATGVAFEFQYMGAKDIC 498
DG++ +S +++ +V N +L G A + V RR TGV G
Sbjct: 204 DGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADRR----CTGVDIVDSAFGHTHRL 259
Query: 499 VVESKVTIVACGALSTPNLLKRSGLKNA---------------NIGKNLHLHP--VTMAW 541
++V +++ GA+ TP LL SG+ A +G++L HP V
Sbjct: 260 TARNEV-VLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFE 318
Query: 542 GYFPKTSSSGEW-------PEEKKTSYEGGIMTAMSTTVG-NFGKSGYGAVIQTPALHPG 593
P + S +W P E +M S N + GY P G
Sbjct: 319 AKQPMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGY------PTTENG 372
Query: 594 MFSSLMPWVSGA----DIKLRMCKFSRTAHIFVLARDQGSGTVNSPYSISYQMEAMDEEN 649
SL P V+ A ++LR F RD+ V+ Y E D
Sbjct: 373 F--SLTPNVTHARSRGTVRLRSRDF----------RDKP--MVDPRYFTD--PEGHDMRV 416
Query: 650 LKKGIEKILRILA-AAGAEEIGTHHCKGKIINVKKASSEEFERFVKEESSRPLRDLSTPL 708
+ GI K I A A AE G G V+ + EE + ++++ T
Sbjct: 417 MVAGIRKAREIAAQPAMAEWTGRELSPG----VEAQTDEELQDYIRK----------THN 462
Query: 709 SSAHQMGSCRMG-IDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAI 763
+ H +G+ RMG ++ + S ++ GV GL +AD SV P + VNP +TV I
Sbjct: 463 TVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMI 518
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 138/356 (38%), Gaps = 73/356 (20%)
Query: 440 DGSKKGTSETWLVDLVNSGNSAILPGCEAIE-VLHKKRRDRNVATGVAFEFQYMGAKDIC 498
DG++ +S +++ +V N +L G A + V RR TGV G
Sbjct: 204 DGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADRR----CTGVDIVDSAFGHTHRL 259
Query: 499 VVESKVTIVACGALSTPNLLKRSGLKNA---------------NIGKNLHLHP--VTMAW 541
++V +++ GA+ TP LL SG+ A +G++L HP V
Sbjct: 260 TARNEV-VLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFE 318
Query: 542 GYFPKTSSSGEW-------PEEKKTSYEGGIMTAMSTTVG-NFGKSGYGAVIQTPALHPG 593
P + S +W P E +M S N + GY P G
Sbjct: 319 AKQPMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGY------PTTENG 372
Query: 594 MFSSLMPWVSGA----DIKLRMCKFSRTAHIFVLARDQGSGTVNSPYSISYQMEAMDEEN 649
SL P V+ A ++LR F RD+ V+ Y E D
Sbjct: 373 F--SLTPNVTHARSRGTVRLRSRDF----------RDKP--MVDPRYFTD--PEGHDMRV 416
Query: 650 LKKGIEKILRILA-AAGAEEIGTHHCKGKIINVKKASSEEFERFVKEESSRPLRDLSTPL 708
+ GI K I A A AE G G V+ + EE + ++++ T
Sbjct: 417 MVAGIRKAREIAAQPAMAEWTGRELSPG----VEAQTDEELQDYIRK----------THN 462
Query: 709 SSAHQMGSCRMG-IDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAI 763
+ H +G+ RMG ++ + S ++ GV GL +AD SV P + VNP +TV I
Sbjct: 463 TVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMI 518
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 712 HQMGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQSV 771
H +G C +G + G G + LY+ D S+ P ++GVNP VT+ A+A + +
Sbjct: 442 HPLGGCVLG-----KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERI 496
Query: 772 L 772
+
Sbjct: 497 I 497
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 712 HQMGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQSV 771
H +G C +G + G G + LY+ D S+ P ++GVNP VT+ A+A + +
Sbjct: 442 HPLGGCVLG-----KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERI 496
Query: 772 L 772
+
Sbjct: 497 I 497
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 712 HQMGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQSV 771
H +G C +G + G G + LY+ D S+ P ++GVNP VT+ A+A + +
Sbjct: 440 HPLGGCVLG-----KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERI 494
Query: 772 L 772
+
Sbjct: 495 I 495
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 712 HQMGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQSV 771
H +G C +G + G G + LY+ D S+ P ++GV+P VT+ A+A + +
Sbjct: 442 HPLGGCVLG-----KATDDYGRVAGYKNLYVTDGSLIPGSVGVDPFVTITALAERNVERI 496
Query: 772 L 772
+
Sbjct: 497 I 497
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 714 MGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQSVL 772
+G C +G + G G + LY+ D S+ P ++GVNP VT+ A+A + ++
Sbjct: 444 LGGCVLG-----KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERII 497
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 714 MGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQSVL 772
+G C +G + G G + LY+ D S+ P ++GVNP VT+ A+A + ++
Sbjct: 444 LGGCVLG-----KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERII 497
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 714 MGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQSVL 772
+G C +G + G G + LY+ D S+ P ++GVNP VT+ A+A + ++
Sbjct: 446 LGGCVLG-----KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERII 499
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 714 MGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQSVL 772
+G C +G + G G + LY+ D S+ P ++GVNP VT+ A+A + ++
Sbjct: 444 LGGCVLG-----KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERII 497
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 712 HQMGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQSV 771
H +G C +G + G G + LY+ D S+ P ++GV P VT+ A+A + +
Sbjct: 442 HPLGGCVLG-----KATDDYGRVAGYKNLYVTDGSLIPGSVGVLPFVTITALAERNVERI 496
Query: 772 L 772
+
Sbjct: 497 I 497
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 520 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 574
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 520 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 574
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 712 HQMGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQSV 771
H +G+C M VV+ +GV+GL + D S+ PT + + M A+A + ++
Sbjct: 516 HGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAI 575
Query: 772 LD 773
L+
Sbjct: 576 LE 577
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
Length = 623
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 715 GSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
G+ RMG D K VN +G + L+L PTA G NP +T ++A
Sbjct: 551 GTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 70/352 (19%), Positives = 127/352 (36%), Gaps = 52/352 (14%)
Query: 436 LGCKDGSKKGTSETWLVDLVNS-GNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGA 494
L +DG + ++ WL V N IL G + + + R+ + +G
Sbjct: 201 LNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQVRS--------LEVVGR 252
Query: 495 KDICVVESKVTIVACGALSTPNLLKRSGL---------------KNANIGKNLHLHPVTM 539
+ V + ++ GAL +P LL RSG+ +IG+NL H +
Sbjct: 253 QGSAEVFADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGA 312
Query: 540 AWGYFPKTSSSGEWPEEKKTSYEGGIMTAMSTTVGNFGKSGYGAVIQTPALHPGMFSSLM 599
Y + P + S M A S F +G ++ + P + S
Sbjct: 313 GNLYAARKPVP---PSRLQHSESMAYMRADS-----FTAAGQPEIVVGCGVAPIVSESFP 364
Query: 600 PWVSGADIKLRMCKFSRTAH--IFVLARDQGSGTVNSPYSISYQMEAMDEENLKKGIEKI 657
+G+ L T+ + + + G + P +Y D E ++ +E
Sbjct: 365 APAAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDP---AYLQTGRDRERFRRALEAS 421
Query: 658 LRILAAAGAEEIGTHHCKGKIINVKKASSEEFERFVKEESSRPLRDLSTPLSSAHQMGSC 717
I G + + +++ S+ E + F+ + ++ H G+C
Sbjct: 422 RTI----GHRDELAGWRERELLPGTPNSAAEMDDFIAR----------SVITHHHPCGTC 467
Query: 718 RMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQ 769
RMG DP +VV+ ++ L++ D S+ P V AIA A+
Sbjct: 468 RMGKDPD-AVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETFAR 518
>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp
Length = 622
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 712 HQMGSCRMGIDPKTS--VVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764
H G+ R G D K VN +G + L+L PTA G NP +T ++A
Sbjct: 547 HLGGTHRXGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAXSLA 601
>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
Length = 507
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 739 GLYLADTSVFPTALGVNPMVTVQAIA 764
GLY+ D S+ P +GVNP VT+ A+A
Sbjct: 469 GLYVVDGSLVPGNVGVNPFVTITALA 494
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 712 HQMGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQSV 771
H + SC M VV+ + +G +GL + D S+ PT + + M +A A ++
Sbjct: 520 HAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAI 579
Query: 772 LD 773
LD
Sbjct: 580 LD 581
>pdb|1R9L|A Chain A, Structure Analysis Of Prox In Complex With Glycine Betaine
pdb|1R9Q|A Chain A, Structure Analysis Of Prox In Complex With Proline Betaine
Length = 309
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 393 VQSEVEEEGFNNAVLRRGCKELGYPVNNIPRNSPPDHYCGWCCLGCKDGSKKGTSETWLV 452
VQS + EE F ++ R ++LGY VN + S D+ G+ L D + + T L
Sbjct: 13 VQSTITEETFQTLLVSRALEKLGYTVN---KPSEVDYNVGYTSLASGDATFTAVNWTPLH 69
Query: 453 D 453
D
Sbjct: 70 D 70
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 20/133 (15%)
Query: 581 YGAVIQTPALHPGMFSSLM-PWVSGADIKLRMCKFSRTAHIFVLARDQGSGTVNSPYSIS 639
YG V+ +HPGM L ++ D L + K A I +N P +
Sbjct: 224 YGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEI----------RINDPTQMQ 273
Query: 640 YQMEAMDEENL-KKGIEKILR-----ILAAAGAEEIGTHH-CKGKIINVKKASSEEFERF 692
++ +EENL K+ ++KIL I+ G +E+ + K ++ V++A + E+
Sbjct: 274 KFLD--EEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKL 331
Query: 693 VKEESSRPLRDLS 705
+ R + ++
Sbjct: 332 ARATGGRVVSNID 344
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 336 VILLAGSTVGGGSTINWSASIKTPKHVANEWCDEYELKLFESDLYKEAM--EVVCERMGV 393
V+ + G ++GG T+ W+A + P+ A L++ DL A + E G+
Sbjct: 119 VLFMTGLSMGGALTV-WAAG-QFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGI 176
Query: 394 QSEVEEEGFNNAVLRRGCKELGYPVNNIP 422
S+++ EG KEL YPV +P
Sbjct: 177 GSDIKAEG---------VKELAYPVTPVP 196
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 336 VILLAGSTVGGGSTINWSASIKTPKHVANEWCDEYELKLFESDLYKEAM--EVVCERMGV 393
V+ + G ++GG T+ W+A + P+ A L++ DL A + E G+
Sbjct: 121 VLFMTGLSMGGALTV-WAAG-QFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGI 178
Query: 394 QSEVEEEGFNNAVLRRGCKELGYPVNNIP 422
S+++ EG KEL YPV +P
Sbjct: 179 GSDIKAEG---------VKELAYPVTPVP 198
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 691 RFVKEESSRPLRDLSTPLSSAHQM---GSCRMGIDPKTSVVNQMGETWGVEGLYLADTSV 747
+F + SRPLR L +P H + G + P ++ N G WG +G Y
Sbjct: 140 QFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRG- 198
Query: 748 FPTALGVNPMVTVQAI 763
A GVN M + +
Sbjct: 199 -SGACGVNTMASSAVV 213
>pdb|1Q9S|A Chain A, Crystal Structure Of Riboflavin Kinase With Ternary
Product Complex
Length = 149
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 409 RGCKELGYPVNNIPR----NSPPDH----YCGWCCLGCKDGSKKGTSETW 450
RG K+LG P N P N P D Y GW +G D K S W
Sbjct: 19 RGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVSIGW 68
>pdb|2QS8|A Chain A, Crystal Structure Of A Xaa-Pro Dipeptidase With Bound
Methionine In The Active Site
pdb|2QS8|B Chain B, Crystal Structure Of A Xaa-Pro Dipeptidase With Bound
Methionine In The Active Site
Length = 418
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 VELGSI-DKETLQLWGEENHCYVNSLSSQEMESLSALCDTFLPAVDVKTAASIDKDIADF 61
+E G+ D E L E YV ++S+ E + + D F P + AAS+ I+D
Sbjct: 253 IEHGTFXDLEAXDLXIENGTYYVPTISAGEFVAEKSKIDNFFPEIVRPKAASVGPQISDT 312
Query: 62 FR 63
FR
Sbjct: 313 FR 314
>pdb|1NB0|A Chain A, Crystal Structure Of Human Riboflavin Kinase
pdb|1NB9|A Chain A, Crystal Structure Of Riboflavin Kinase
pdb|1P4M|A Chain A, Crystal Structure Of Riboflavin Kinase
Length = 147
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 409 RGCKELGYPVNNIPR----NSPPDH----YCGWCCLGCKDGSKKGTSETW 450
RG K+LG P N P N P D Y GW +G D K S W
Sbjct: 17 RGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVSIGW 66
>pdb|3BBJ|A Chain A, Crystal Structure Of A Putative Thioesterase Ii (Tfu_2367)
From Thermobifida Fusca Yx At 2.45 A Resolution
pdb|3BBJ|B Chain B, Crystal Structure Of A Putative Thioesterase Ii (Tfu_2367)
From Thermobifida Fusca Yx At 2.45 A Resolution
Length = 272
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 516 NLLKRSGLKNANIGKNLHLHPVTMAWGYFPKTSSSGEWPEEKKTSYEGGIMTAMSTTVGN 575
+L+RS L ++ HLH V+ ++ +F + +SSG E + G +T + TT+
Sbjct: 43 TVLQRSALAESD-----HLHAVSSSY-HFHRPASSGPAEIETRVLKRGRTVTTVQTTLFQ 96
Query: 576 FGKSGYGAVIQTPALHP 592
G++ + T L P
Sbjct: 97 EGRTILTGTLATATLDP 113
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 32/97 (32%)
Query: 454 LVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513
LVNSG + LP +E ++ GA V K +++ G++
Sbjct: 234 LVNSGTTNGLPAFRCVEYAEQE-----------------GAPTTTVCAKKEVVLSAGSVG 276
Query: 514 TPNLLKRSGL---------------KNANIGKNLHLH 535
TP LL+ SG+ N ++G+NL H
Sbjct: 277 TPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDH 313
>pdb|1YMT|A Chain A, Mouse Sf-1 Lbd
Length = 246
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 101 CIGSLVLCGRYCFSSKFPYMHSFTQLPQKKRDAVLVSWSLSYFYHLRMLYKAMKLLILLV 160
C+ L+L + KF HS + Q+K +A L+ ++LS++ H ++ + L ++ V
Sbjct: 155 CLKFLIL---FSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLSLVEV 211
Query: 161 FFTQVNEKNENLSWKAIGYKGPDPEFKTKSMQRK 194
+ K E L K +G + P + +Q K
Sbjct: 212 RALSMQAK-EYLYHKHLGNEMPRNNLLIEMLQAK 244
>pdb|3F7D|A Chain A, Sf-1 Lbd Bound By Phosphatidylcholine
Length = 244
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 101 CIGSLVLCGRYCFSSKFPYMHSFTQLPQKKRDAVLVSWSLSYFYHLRMLYKAMKLLILLV 160
C+ L+L + KF HS + Q+K +A L+ ++LS++ H ++ + L ++ V
Sbjct: 153 CLKFLIL---FSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLSLVEV 209
Query: 161 FFTQVNEKNENLSWKAIGYKGPDPEFKTKSMQRK 194
+ K E L K +G + P + +Q K
Sbjct: 210 RALSMQAK-EYLYHKHLGNEMPRNNLLIEMLQAK 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,892,296
Number of Sequences: 62578
Number of extensions: 876238
Number of successful extensions: 2067
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2026
Number of HSP's gapped (non-prelim): 52
length of query: 781
length of database: 14,973,337
effective HSP length: 106
effective length of query: 675
effective length of database: 8,340,069
effective search space: 5629546575
effective search space used: 5629546575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)