Query 003990
Match_columns 781
No_of_seqs 479 out of 1977
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 15:35:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02106 choline dehydrogenase 100.0 2.6E-64 5.6E-69 587.3 38.0 477 268-775 2-535 (560)
2 TIGR01810 betA choline dehydro 100.0 2.1E-63 4.6E-68 576.5 37.0 472 273-773 1-528 (532)
3 KOG1238 Glucose dehydrogenase/ 100.0 7.5E-62 1.6E-66 540.8 35.7 490 268-779 54-616 (623)
4 COG2303 BetA Choline dehydroge 100.0 7.3E-57 1.6E-61 518.2 35.5 475 268-773 4-535 (542)
5 PLN02785 Protein HOTHEAD 100.0 8.3E-54 1.8E-58 495.5 37.8 466 268-775 52-580 (587)
6 TIGR02462 pyranose_ox pyranose 100.0 1.2E-48 2.5E-53 443.9 36.5 452 272-775 1-543 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 1.3E-41 2.7E-46 366.3 16.0 260 272-537 1-296 (296)
8 PF05199 GMC_oxred_C: GMC oxid 99.9 2E-27 4.3E-32 227.9 11.8 131 626-767 1-144 (144)
9 PF00890 FAD_binding_2: FAD bi 99.5 4.2E-13 9.2E-18 151.7 13.4 67 446-520 143-209 (417)
10 PRK06481 fumarate reductase fl 99.4 1.6E-12 3.6E-17 150.1 16.8 65 448-520 194-259 (506)
11 PRK08274 tricarballylate dehyd 99.4 9.6E-13 2.1E-17 151.0 14.5 67 447-521 134-200 (466)
12 PRK07121 hypothetical protein; 99.4 2.5E-12 5.3E-17 148.5 17.4 63 449-519 182-245 (492)
13 PRK12835 3-ketosteroid-delta-1 99.4 2.5E-12 5.4E-17 150.6 16.3 63 451-520 219-283 (584)
14 PRK11101 glpA sn-glycerol-3-ph 99.4 5.7E-12 1.2E-16 146.8 16.9 79 447-533 152-233 (546)
15 PRK12837 3-ketosteroid-delta-1 99.4 5.1E-12 1.1E-16 146.3 16.1 66 448-521 177-244 (513)
16 PRK12834 putative FAD-binding 99.4 8.6E-12 1.9E-16 145.7 16.7 36 269-304 2-37 (549)
17 PRK12845 3-ketosteroid-delta-1 99.3 1.8E-11 3.9E-16 142.7 17.9 62 450-520 223-286 (564)
18 PTZ00306 NADH-dependent fumara 99.3 1.1E-11 2.5E-16 155.4 17.1 59 458-516 560-623 (1167)
19 PRK06452 sdhA succinate dehydr 99.3 8.6E-12 1.9E-16 145.8 14.6 58 449-513 141-198 (566)
20 PRK07573 sdhA succinate dehydr 99.3 1.4E-11 3.1E-16 145.6 15.9 55 454-514 179-233 (640)
21 PLN02815 L-aspartate oxidase 99.3 1.1E-11 2.5E-16 144.7 14.6 63 449-513 160-222 (594)
22 PRK06175 L-aspartate oxidase; 99.3 1.1E-11 2.3E-16 140.5 14.0 59 448-514 132-190 (433)
23 PRK12844 3-ketosteroid-delta-1 99.3 2.5E-11 5.4E-16 141.7 16.5 59 452-519 216-275 (557)
24 PF01266 DAO: FAD dependent ox 99.3 1.5E-11 3.2E-16 135.2 13.4 66 446-525 149-214 (358)
25 PRK08958 sdhA succinate dehydr 99.3 1.9E-11 4E-16 143.5 14.9 60 449-514 148-207 (588)
26 TIGR01813 flavo_cyto_c flavocy 99.3 3E-11 6.6E-16 137.5 16.2 64 448-518 134-197 (439)
27 PTZ00139 Succinate dehydrogena 99.3 1.9E-11 4.1E-16 144.1 14.1 59 449-514 171-230 (617)
28 COG2081 Predicted flavoprotein 99.3 1.8E-11 3.9E-16 131.2 12.2 168 270-515 2-169 (408)
29 PRK07804 L-aspartate oxidase; 99.3 5.3E-11 1.1E-15 138.6 16.8 38 268-305 13-50 (541)
30 PRK09078 sdhA succinate dehydr 99.3 3.2E-11 6.9E-16 141.9 15.1 60 449-514 154-213 (598)
31 PLN00128 Succinate dehydrogena 99.3 3E-11 6.5E-16 142.5 14.8 61 448-514 191-251 (635)
32 PRK07395 L-aspartate oxidase; 99.3 1.8E-11 3.8E-16 142.5 12.7 59 449-513 139-197 (553)
33 PRK06854 adenylylsulfate reduc 99.2 2.3E-10 5E-15 134.8 18.6 58 450-513 138-195 (608)
34 PRK08641 sdhA succinate dehydr 99.2 2.4E-10 5.2E-15 134.3 18.3 52 458-514 150-201 (589)
35 PRK09231 fumarate reductase fl 99.2 8.3E-11 1.8E-15 138.0 14.4 59 450-514 139-197 (582)
36 PRK06263 sdhA succinate dehydr 99.2 7.6E-11 1.7E-15 137.6 14.0 59 451-514 140-198 (543)
37 PRK07803 sdhA succinate dehydr 99.2 7.8E-11 1.7E-15 139.2 14.3 50 459-514 165-214 (626)
38 PRK12839 hypothetical protein; 99.2 1.7E-10 3.6E-15 134.9 16.8 38 268-305 5-42 (572)
39 PRK09077 L-aspartate oxidase; 99.2 1.1E-10 2.3E-15 136.0 15.0 62 450-513 144-207 (536)
40 PRK07057 sdhA succinate dehydr 99.2 1.6E-10 3.4E-15 135.9 16.3 60 449-514 153-212 (591)
41 TIGR01176 fum_red_Fp fumarate 99.2 1.8E-10 3.8E-15 135.0 16.5 60 449-514 137-196 (580)
42 PRK07843 3-ketosteroid-delta-1 99.2 2E-10 4.3E-15 134.3 16.9 63 451-521 214-277 (557)
43 PRK07512 L-aspartate oxidase; 99.2 8.1E-11 1.8E-15 136.2 13.5 58 448-513 140-197 (513)
44 PRK05945 sdhA succinate dehydr 99.2 2.3E-10 4.9E-15 134.4 16.9 59 449-514 140-198 (575)
45 PRK06134 putative FAD-binding 99.2 2.4E-10 5.1E-15 134.3 16.8 62 449-519 222-284 (581)
46 PRK08626 fumarate reductase fl 99.2 1.4E-10 3E-15 137.5 14.3 57 451-514 165-221 (657)
47 PRK12842 putative succinate de 99.2 2.3E-10 5.1E-15 134.3 16.1 62 450-520 220-282 (574)
48 PRK08205 sdhA succinate dehydr 99.2 1.8E-10 3.9E-15 135.3 15.1 61 450-513 146-206 (583)
49 TIGR01812 sdhA_frdA_Gneg succi 99.2 4.1E-10 8.8E-15 132.3 17.5 58 449-513 134-191 (566)
50 PRK13800 putative oxidoreducta 99.2 5.3E-10 1.1E-14 137.6 18.4 49 459-513 157-205 (897)
51 PRK08275 putative oxidoreducta 99.2 5.5E-10 1.2E-14 130.7 17.7 57 450-513 143-200 (554)
52 PRK08071 L-aspartate oxidase; 99.2 1.8E-10 3.8E-15 133.3 13.3 54 453-514 138-191 (510)
53 PF03486 HI0933_like: HI0933-l 99.2 3.6E-11 7.8E-16 134.1 7.2 168 272-516 1-169 (409)
54 PRK12409 D-amino acid dehydrog 99.2 3.9E-10 8.5E-15 127.2 15.6 34 272-305 2-35 (410)
55 TIGR00551 nadB L-aspartate oxi 99.2 3.1E-10 6.7E-15 130.8 14.7 57 450-514 134-190 (488)
56 PRK06069 sdhA succinate dehydr 99.2 7.2E-10 1.6E-14 130.3 18.0 59 449-513 142-200 (577)
57 PRK00711 D-amino acid dehydrog 99.1 2.8E-10 6E-15 128.7 13.7 64 447-524 204-267 (416)
58 PLN02464 glycerol-3-phosphate 99.1 5.5E-10 1.2E-14 131.9 16.5 70 446-522 234-304 (627)
59 PRK12843 putative FAD-binding 99.1 8.7E-10 1.9E-14 129.5 17.6 63 449-520 226-290 (578)
60 COG0579 Predicted dehydrogenas 99.1 5.9E-10 1.3E-14 123.4 14.7 68 446-525 155-222 (429)
61 COG1635 THI4 Ribulose 1,5-bisp 99.1 2.1E-10 4.6E-15 112.9 9.9 60 448-511 113-176 (262)
62 TIGR01373 soxB sarcosine oxida 99.1 3.3E-10 7.2E-15 127.7 13.1 66 448-526 187-252 (407)
63 PRK04176 ribulose-1,5-biphosph 99.1 4.1E-10 8.9E-15 118.4 12.7 63 446-512 106-172 (257)
64 PF01946 Thi4: Thi4 family; PD 99.1 2.5E-10 5.5E-15 113.3 9.6 60 448-511 100-163 (230)
65 COG3573 Predicted oxidoreducta 99.1 2.3E-10 5.1E-15 118.2 9.2 71 447-521 155-236 (552)
66 TIGR01811 sdhA_Bsu succinate d 99.1 1.1E-09 2.4E-14 128.9 16.3 53 457-514 145-197 (603)
67 TIGR02061 aprA adenosine phosp 99.1 2.5E-09 5.4E-14 125.3 18.8 52 459-513 140-191 (614)
68 COG0578 GlpA Glycerol-3-phosph 99.1 1.2E-09 2.6E-14 123.3 15.3 70 447-525 167-236 (532)
69 TIGR01377 soxA_mon sarcosine o 99.1 8.6E-10 1.9E-14 123.0 13.3 34 272-305 1-34 (380)
70 TIGR03329 Phn_aa_oxid putative 99.1 1.9E-09 4.1E-14 123.5 15.3 36 269-304 22-59 (460)
71 TIGR00292 thiazole biosynthesi 99.0 1.1E-09 2.5E-14 114.7 12.0 62 447-511 103-168 (254)
72 PRK11259 solA N-methyltryptoph 99.0 2.6E-09 5.7E-14 118.9 15.3 36 270-305 2-37 (376)
73 PRK12266 glpD glycerol-3-phosp 99.0 3.2E-09 7E-14 122.9 16.3 68 448-524 159-227 (508)
74 TIGR01320 mal_quin_oxido malat 99.0 4.2E-09 9.2E-14 120.7 17.0 71 446-524 180-250 (483)
75 PRK13369 glycerol-3-phosphate 99.0 2E-09 4.3E-14 124.6 14.3 67 448-524 159-226 (502)
76 PTZ00383 malate:quinone oxidor 99.0 2.6E-09 5.5E-14 122.3 14.5 65 447-524 214-283 (497)
77 PRK11728 hydroxyglutarate oxid 99.0 1.2E-09 2.6E-14 122.6 11.2 62 448-524 153-214 (393)
78 COG1053 SdhA Succinate dehydro 99.0 2.3E-09 4.9E-14 124.0 13.2 192 268-513 3-202 (562)
79 PRK05257 malate:quinone oxidor 99.0 1.4E-08 3E-13 116.7 18.2 71 447-524 186-256 (494)
80 PLN02661 Putative thiazole syn 99.0 3.8E-09 8.3E-14 114.0 12.3 61 448-512 176-243 (357)
81 TIGR02485 CobZ_N-term precorri 99.0 4E-09 8.7E-14 119.9 13.0 63 446-518 125-188 (432)
82 PRK08401 L-aspartate oxidase; 99.0 1.5E-08 3.3E-13 116.1 17.6 33 272-304 2-34 (466)
83 KOG2820 FAD-dependent oxidored 98.9 2.5E-09 5.4E-14 111.5 9.5 38 268-305 4-41 (399)
84 PRK13339 malate:quinone oxidor 98.9 2.3E-08 4.9E-13 114.2 18.1 81 447-535 187-275 (497)
85 COG0029 NadB Aspartate oxidase 98.9 3.3E-09 7.3E-14 116.4 8.9 61 447-513 136-196 (518)
86 TIGR03364 HpnW_proposed FAD de 98.9 6.9E-09 1.5E-13 115.2 10.5 33 272-304 1-33 (365)
87 PRK10157 putative oxidoreducta 98.9 1.2E-08 2.6E-13 115.7 12.6 36 270-305 4-39 (428)
88 PF13618 Gluconate_2-dh3: Gluc 98.9 1.4E-08 3E-13 95.7 10.5 119 28-174 1-128 (131)
89 COG0665 DadA Glycine/D-amino a 98.8 3.1E-08 6.8E-13 110.7 13.8 36 270-305 3-38 (387)
90 COG0644 FixC Dehydrogenases (f 98.8 1.4E-08 3E-13 114.1 10.9 36 270-305 2-37 (396)
91 PRK05192 tRNA uridine 5-carbox 98.8 2.5E-08 5.5E-13 115.0 12.2 35 270-304 3-37 (618)
92 KOG0042 Glycerol-3-phosphate d 98.8 7.4E-09 1.6E-13 113.6 7.1 83 429-520 209-293 (680)
93 PF12831 FAD_oxidored: FAD dep 98.8 5.8E-09 1.3E-13 118.2 6.6 63 451-524 96-158 (428)
94 KOG2844 Dimethylglycine dehydr 98.7 9.2E-08 2E-12 107.4 13.3 72 442-527 185-256 (856)
95 PRK10015 oxidoreductase; Provi 98.7 4.1E-08 8.9E-13 111.3 9.3 36 270-305 4-39 (429)
96 PTZ00363 rab-GDP dissociation 98.7 4.9E-08 1.1E-12 110.3 9.6 42 269-310 2-43 (443)
97 PRK01747 mnmC bifunctional tRN 98.7 2.6E-08 5.6E-13 119.3 7.7 34 271-304 260-293 (662)
98 PRK13977 myosin-cross-reactive 98.7 4.4E-07 9.6E-12 103.9 16.7 61 450-513 232-293 (576)
99 TIGR02730 carot_isom carotene 98.7 9E-08 2E-12 110.7 11.0 68 439-518 224-291 (493)
100 PF06039 Mqo: Malate:quinone o 98.6 9.6E-07 2.1E-11 97.2 17.6 84 447-540 184-267 (488)
101 PF01134 GIDA: Glucose inhibit 98.6 5.8E-08 1.3E-12 106.5 8.0 53 448-512 98-151 (392)
102 COG1233 Phytoene dehydrogenase 98.6 1.6E-07 3.4E-12 108.2 11.6 38 270-307 2-39 (487)
103 PRK06185 hypothetical protein; 98.6 1.8E-07 3.8E-12 105.6 11.1 63 453-525 117-179 (407)
104 KOG2404 Fumarate reductase, fl 98.6 1.3E-07 2.9E-12 97.8 7.7 54 460-520 160-215 (477)
105 TIGR02733 desat_CrtD C-3',4' d 98.5 5.9E-07 1.3E-11 103.9 13.2 36 271-306 1-36 (492)
106 KOG1298 Squalene monooxygenase 98.5 2.7E-07 6E-12 97.8 8.8 56 449-512 152-207 (509)
107 PRK07364 2-octaprenyl-6-methox 98.5 1.6E-06 3.5E-11 98.0 14.7 38 268-305 15-52 (415)
108 TIGR02734 crtI_fam phytoene de 98.5 5E-07 1.1E-11 104.9 10.3 68 440-519 215-282 (502)
109 PLN02985 squalene monooxygenas 98.4 3E-06 6.6E-11 98.1 14.8 37 268-304 40-76 (514)
110 PRK08773 2-octaprenyl-3-methyl 98.4 5.1E-07 1.1E-11 101.3 8.0 36 269-304 4-39 (392)
111 PRK05329 anaerobic glycerol-3- 98.4 2.9E-06 6.4E-11 95.3 13.5 34 271-304 2-35 (422)
112 TIGR00275 flavoprotein, HI0933 98.4 2.2E-06 4.8E-11 96.4 12.2 31 275-305 1-31 (400)
113 PRK07208 hypothetical protein; 98.4 8.4E-06 1.8E-10 94.1 17.1 40 269-308 2-41 (479)
114 TIGR00136 gidA glucose-inhibit 98.3 2.5E-06 5.5E-11 98.5 12.0 33 272-304 1-33 (617)
115 PRK06126 hypothetical protein; 98.3 3.1E-06 6.6E-11 99.3 12.9 36 269-304 5-40 (545)
116 PRK07608 ubiquinone biosynthes 98.3 5E-06 1.1E-10 93.0 14.1 37 269-305 3-39 (388)
117 KOG4254 Phytoene desaturase [C 98.3 2.8E-06 6.2E-11 92.0 11.2 69 435-515 255-323 (561)
118 PF13738 Pyr_redox_3: Pyridine 98.3 1.1E-06 2.4E-11 88.8 7.8 62 449-522 86-147 (203)
119 TIGR01350 lipoamide_DH dihydro 98.3 1E-05 2.2E-10 92.8 16.7 33 271-303 1-33 (461)
120 TIGR03377 glycerol3P_GlpA glyc 98.3 4.6E-06 1E-10 97.1 13.4 72 446-525 130-201 (516)
121 TIGR03378 glycerol3P_GlpB glyc 98.3 2.6E-05 5.5E-10 86.9 18.4 65 448-522 267-331 (419)
122 PF01494 FAD_binding_3: FAD bi 98.3 5.1E-07 1.1E-11 99.0 4.3 35 271-305 1-35 (356)
123 PLN02172 flavin-containing mon 98.3 7.1E-06 1.5E-10 93.7 13.6 38 268-305 7-44 (461)
124 PRK06183 mhpA 3-(3-hydroxyphen 98.3 1.2E-05 2.6E-10 94.2 15.5 36 269-304 8-43 (538)
125 PLN02697 lycopene epsilon cycl 98.3 3.3E-06 7.1E-11 97.5 10.4 36 269-304 106-141 (529)
126 KOG2415 Electron transfer flav 98.3 2.3E-06 5E-11 91.6 8.2 76 445-524 183-269 (621)
127 COG3380 Predicted NAD/FAD-depe 98.2 6.5E-06 1.4E-10 84.0 10.7 32 273-304 3-34 (331)
128 PRK08244 hypothetical protein; 98.2 3.6E-06 7.8E-11 97.5 10.4 35 271-305 2-36 (493)
129 PLN02463 lycopene beta cyclase 98.2 4.3E-06 9.2E-11 95.0 10.6 36 269-304 26-61 (447)
130 COG2509 Uncharacterized FAD-de 98.2 1.4E-05 3E-10 87.5 13.7 210 268-514 15-231 (486)
131 PRK06184 hypothetical protein; 98.2 1E-05 2.2E-10 93.9 13.3 34 271-304 3-36 (502)
132 PRK05675 sdhA succinate dehydr 98.2 8.9E-06 1.9E-10 95.6 12.7 60 449-514 131-190 (570)
133 TIGR01988 Ubi-OHases Ubiquinon 98.2 2.2E-06 4.7E-11 95.7 7.2 33 273-305 1-33 (385)
134 PRK08163 salicylate hydroxylas 98.2 8.5E-06 1.8E-10 91.5 12.0 35 270-304 3-37 (396)
135 PRK06847 hypothetical protein; 98.2 2.4E-05 5.1E-10 87.2 15.4 34 271-304 4-37 (375)
136 PRK11445 putative oxidoreducta 98.2 2.2E-05 4.8E-10 86.8 14.9 32 272-304 2-33 (351)
137 KOG2665 Predicted FAD-dependen 98.2 1.2E-05 2.5E-10 83.6 11.4 216 268-537 45-285 (453)
138 PRK06834 hypothetical protein; 98.2 1.8E-05 3.9E-10 91.4 14.5 34 271-304 3-36 (488)
139 KOG2853 Possible oxidoreductas 98.2 2.1E-05 4.5E-10 82.5 12.8 40 268-307 83-126 (509)
140 TIGR02731 phytoene_desat phyto 98.1 5.6E-05 1.2E-09 86.6 16.8 35 273-307 1-35 (453)
141 PRK08243 4-hydroxybenzoate 3-m 98.1 1.4E-05 3.1E-10 89.7 11.4 34 271-304 2-35 (392)
142 PRK07233 hypothetical protein; 98.1 1.7E-05 3.8E-10 89.9 11.8 36 273-308 1-36 (434)
143 PRK07190 hypothetical protein; 98.1 2.2E-05 4.7E-10 90.6 12.4 35 270-304 4-38 (487)
144 PRK08132 FAD-dependent oxidore 98.1 5E-05 1.1E-09 89.2 15.2 35 270-304 22-56 (547)
145 TIGR02732 zeta_caro_desat caro 98.0 3.6E-05 7.7E-10 88.6 12.9 63 452-519 227-290 (474)
146 COG2072 TrkA Predicted flavopr 98.0 4.4E-05 9.6E-10 86.8 13.5 37 268-304 5-42 (443)
147 COG0445 GidA Flavin-dependent 98.0 8.8E-06 1.9E-10 90.7 7.4 35 270-304 3-37 (621)
148 TIGR01816 sdhA_forward succina 98.0 1.7E-05 3.7E-10 93.1 10.3 59 449-514 124-182 (565)
149 COG0654 UbiH 2-polyprenyl-6-me 98.0 2.7E-05 5.8E-10 87.4 11.4 33 271-303 2-34 (387)
150 PLN02612 phytoene desaturase 98.0 6.7E-05 1.5E-09 88.2 14.3 37 270-306 92-128 (567)
151 PF13450 NAD_binding_8: NAD(P) 98.0 8.4E-06 1.8E-10 67.3 4.3 30 276-305 1-30 (68)
152 PRK07588 hypothetical protein; 98.0 7.1E-05 1.5E-09 84.0 13.3 32 273-304 2-33 (391)
153 KOG2852 Possible oxidoreductas 97.9 1.6E-05 3.4E-10 81.8 6.4 67 448-523 151-217 (380)
154 COG3075 GlpB Anaerobic glycero 97.9 0.00011 2.4E-09 77.1 12.4 51 455-515 269-319 (421)
155 PRK06116 glutathione reductase 97.9 1E-05 2.2E-10 92.6 5.1 35 270-304 3-37 (450)
156 TIGR01421 gluta_reduc_1 glutat 97.9 9.7E-06 2.1E-10 92.7 4.8 34 271-304 2-35 (450)
157 PF05834 Lycopene_cycl: Lycope 97.9 3.7E-05 8E-10 85.8 9.3 33 273-305 1-35 (374)
158 PRK12810 gltD glutamate syntha 97.9 0.00019 4.1E-09 82.7 15.3 68 452-524 337-412 (471)
159 PRK15317 alkyl hydroperoxide r 97.9 9.9E-05 2.1E-09 86.0 13.1 60 456-521 398-457 (517)
160 TIGR01316 gltA glutamate synth 97.9 0.00016 3.6E-09 82.6 14.5 36 270-305 132-167 (449)
161 PRK12831 putative oxidoreducta 97.9 0.00039 8.4E-09 79.8 17.4 36 270-305 139-174 (464)
162 PRK06370 mercuric reductase; V 97.9 1.4E-05 2.9E-10 91.9 5.4 37 268-304 2-38 (463)
163 PTZ00058 glutathione reductase 97.9 1.4E-05 3E-10 93.3 5.5 35 270-304 47-81 (561)
164 PRK05976 dihydrolipoamide dehy 97.9 1.3E-05 2.9E-10 92.2 5.2 36 269-304 2-37 (472)
165 KOG2311 NAD/FAD-utilizing prot 97.9 3.5E-05 7.7E-10 84.0 7.9 35 269-303 26-60 (679)
166 TIGR01424 gluta_reduc_2 glutat 97.8 1.4E-05 3E-10 91.4 4.9 34 271-304 2-35 (446)
167 PLN00093 geranylgeranyl diphos 97.8 1.7E-05 3.7E-10 90.4 5.7 37 268-304 36-72 (450)
168 PRK07538 hypothetical protein; 97.8 0.00018 3.8E-09 81.5 13.8 32 273-304 2-33 (413)
169 TIGR03140 AhpF alkyl hydropero 97.8 0.00016 3.5E-09 84.1 13.7 58 458-521 401-458 (515)
170 COG1231 Monoamine oxidase [Ami 97.8 0.00035 7.5E-09 77.1 15.0 40 269-308 5-44 (450)
171 PLN02546 glutathione reductase 97.8 2E-05 4.4E-10 91.9 5.8 34 269-302 77-110 (558)
172 TIGR01372 soxA sarcosine oxida 97.8 9.4E-05 2E-09 92.4 11.9 63 453-524 360-422 (985)
173 TIGR02023 BchP-ChlP geranylger 97.8 1.6E-05 3.5E-10 89.2 4.4 32 272-303 1-32 (388)
174 TIGR02032 GG-red-SF geranylger 97.8 2.1E-05 4.6E-10 84.0 4.7 34 272-305 1-34 (295)
175 PRK06467 dihydrolipoamide dehy 97.8 2.5E-05 5.4E-10 89.9 5.4 35 270-304 3-37 (471)
176 COG1249 Lpd Pyruvate/2-oxoglut 97.8 2.3E-05 4.9E-10 88.7 4.9 35 270-304 3-37 (454)
177 TIGR02352 thiamin_ThiO glycine 97.8 0.0002 4.3E-09 78.3 12.2 59 446-518 139-197 (337)
178 PRK07818 dihydrolipoamide dehy 97.7 3E-05 6.5E-10 89.1 5.3 34 271-304 4-37 (466)
179 COG0562 Glf UDP-galactopyranos 97.7 3.6E-05 7.8E-10 80.6 5.2 41 271-311 1-41 (374)
180 PRK06416 dihydrolipoamide dehy 97.7 3E-05 6.5E-10 89.1 5.2 35 270-304 3-37 (462)
181 TIGR02053 MerA mercuric reduct 97.7 3.1E-05 6.6E-10 89.0 4.8 33 272-304 1-33 (463)
182 PRK06115 dihydrolipoamide dehy 97.7 3.2E-05 6.9E-10 88.9 4.8 33 271-303 3-35 (466)
183 PLN02487 zeta-carotene desatur 97.7 0.00064 1.4E-08 79.5 15.5 37 271-307 75-111 (569)
184 PLN02507 glutathione reductase 97.7 3.8E-05 8.3E-10 88.9 5.0 35 268-302 22-56 (499)
185 PRK08020 ubiF 2-octaprenyl-3-m 97.7 3.8E-05 8.3E-10 86.1 4.8 35 270-304 4-38 (391)
186 PRK05249 soluble pyridine nucl 97.7 4.5E-05 9.8E-10 87.6 5.3 35 270-304 4-38 (461)
187 PRK13748 putative mercuric red 97.7 4.2E-05 9.1E-10 90.1 5.1 35 270-304 97-131 (561)
188 PRK14694 putative mercuric red 97.6 4.3E-05 9.4E-10 87.9 5.1 35 270-304 5-39 (468)
189 PRK09126 hypothetical protein; 97.6 4E-05 8.6E-10 85.9 4.6 35 271-305 3-37 (392)
190 TIGR01423 trypano_reduc trypan 97.6 4.8E-05 1.1E-09 87.6 5.1 34 270-303 2-36 (486)
191 PTZ00153 lipoamide dehydrogena 97.6 5.4E-05 1.2E-09 89.7 5.3 34 270-303 115-148 (659)
192 PRK07494 2-octaprenyl-6-methox 97.6 5.5E-05 1.2E-09 84.7 5.2 36 269-304 5-40 (388)
193 PRK05714 2-octaprenyl-3-methyl 97.6 4.7E-05 1E-09 85.8 4.6 34 271-304 2-35 (405)
194 PRK08010 pyridine nucleotide-d 97.6 5.2E-05 1.1E-09 86.5 5.0 35 271-305 3-37 (441)
195 TIGR02028 ChlP geranylgeranyl 97.6 4.7E-05 1E-09 85.7 4.5 33 272-304 1-33 (398)
196 TIGR00031 UDP-GALP_mutase UDP- 97.6 6.6E-05 1.4E-09 83.2 5.2 37 272-308 2-38 (377)
197 PRK08013 oxidoreductase; Provi 97.6 5.8E-05 1.3E-09 85.0 4.7 35 271-305 3-37 (400)
198 KOG2960 Protein involved in th 97.6 7.4E-05 1.6E-09 73.5 4.6 62 449-510 162-231 (328)
199 PRK06292 dihydrolipoamide dehy 97.6 6.6E-05 1.4E-09 86.2 5.1 35 270-304 2-36 (460)
200 PRK06327 dihydrolipoamide dehy 97.6 7E-05 1.5E-09 86.3 5.3 33 270-302 3-35 (475)
201 PF00743 FMO-like: Flavin-bind 97.5 0.00035 7.5E-09 81.2 10.5 33 273-305 3-35 (531)
202 PRK07045 putative monooxygenas 97.5 7.2E-05 1.6E-09 83.8 4.6 36 270-305 4-39 (388)
203 PRK07251 pyridine nucleotide-d 97.5 7.6E-05 1.6E-09 85.1 4.8 34 271-304 3-36 (438)
204 PRK08849 2-octaprenyl-3-methyl 97.5 8.5E-05 1.8E-09 83.2 4.8 34 271-304 3-36 (384)
205 PRK12775 putative trifunctiona 97.5 0.00084 1.8E-08 83.7 13.8 37 270-306 429-465 (1006)
206 PF04820 Trp_halogenase: Trypt 97.5 9.3E-05 2E-09 84.5 5.0 33 273-305 1-36 (454)
207 TIGR02360 pbenz_hydroxyl 4-hyd 97.5 9.8E-05 2.1E-09 82.9 4.7 34 271-304 2-35 (390)
208 TIGR01790 carotene-cycl lycope 97.5 9.5E-05 2.1E-09 82.8 4.5 32 273-304 1-32 (388)
209 TIGR03143 AhpF_homolog putativ 97.5 0.0001 2.2E-09 86.5 4.9 36 270-305 3-38 (555)
210 PRK08850 2-octaprenyl-6-methox 97.5 0.0001 2.2E-09 83.1 4.8 33 271-303 4-36 (405)
211 COG0492 TrxB Thioredoxin reduc 97.4 0.00012 2.6E-09 78.8 4.5 35 270-304 2-37 (305)
212 COG1232 HemY Protoporphyrinoge 97.4 0.00084 1.8E-08 75.5 11.3 34 274-307 3-38 (444)
213 TIGR01292 TRX_reduct thioredox 97.4 0.00012 2.6E-09 78.5 4.5 33 272-304 1-33 (300)
214 TIGR01984 UbiH 2-polyprenyl-6- 97.4 0.00012 2.7E-09 81.6 4.7 33 273-305 1-34 (382)
215 PRK14727 putative mercuric red 97.4 0.00016 3.5E-09 83.4 5.7 36 269-304 14-49 (479)
216 PTZ00052 thioredoxin reductase 97.4 0.00012 2.7E-09 84.7 4.7 36 268-303 2-37 (499)
217 PRK07333 2-octaprenyl-6-methox 97.4 0.00011 2.5E-09 82.5 4.4 34 271-304 1-36 (403)
218 PRK06617 2-octaprenyl-6-methox 97.4 0.00013 2.8E-09 81.4 4.6 33 272-304 2-34 (374)
219 PRK05732 2-octaprenyl-6-methox 97.4 0.00013 2.8E-09 81.9 4.4 34 270-303 2-38 (395)
220 PTZ00367 squalene epoxidase; P 97.4 0.00015 3.3E-09 84.7 4.9 35 270-304 32-66 (567)
221 PLN02576 protoporphyrinogen ox 97.4 0.00018 4E-09 83.3 5.6 41 268-308 9-50 (496)
222 TIGR01989 COQ6 Ubiquinone bios 97.4 0.00012 2.7E-09 83.3 4.1 33 272-304 1-37 (437)
223 PRK09897 hypothetical protein; 97.4 0.0021 4.6E-08 74.5 14.2 34 272-305 2-37 (534)
224 KOG0029 Amine oxidase [Seconda 97.3 0.00021 4.5E-09 82.0 5.1 40 269-308 13-52 (501)
225 PRK09564 coenzyme A disulfide 97.3 0.0021 4.6E-08 73.4 13.3 57 454-524 201-257 (444)
226 TIGR01789 lycopene_cycl lycope 97.3 0.00022 4.9E-09 79.3 5.0 32 273-304 1-34 (370)
227 PLN02268 probable polyamine ox 97.3 0.00023 4.9E-09 81.2 5.1 36 273-308 2-37 (435)
228 PRK11883 protoporphyrinogen ox 97.3 0.00024 5.2E-09 81.1 4.8 35 273-307 2-38 (451)
229 PRK07846 mycothione reductase; 97.3 0.00024 5.2E-09 81.3 4.6 32 271-304 1-32 (451)
230 PRK07236 hypothetical protein; 97.3 0.00026 5.6E-09 79.4 4.7 34 271-304 6-39 (386)
231 PRK06753 hypothetical protein; 97.2 0.00028 6E-09 78.6 4.5 33 273-305 2-34 (373)
232 TIGR03452 mycothione_red mycot 97.2 0.00028 6.1E-09 80.8 4.5 32 271-304 2-33 (452)
233 PRK06996 hypothetical protein; 97.2 0.00033 7.1E-09 78.9 4.8 37 268-304 8-48 (398)
234 TIGR00562 proto_IX_ox protopor 97.2 0.00035 7.7E-09 80.1 4.8 35 272-306 3-41 (462)
235 PRK10262 thioredoxin reductase 97.1 0.00038 8.3E-09 75.9 4.5 37 268-304 3-39 (321)
236 COG3634 AhpF Alkyl hydroperoxi 97.1 0.0037 8E-08 66.2 11.3 73 455-534 400-472 (520)
237 PRK06912 acoL dihydrolipoamide 97.1 0.00041 8.9E-09 79.6 4.9 33 273-305 2-34 (458)
238 PRK12771 putative glutamate sy 97.1 0.0053 1.1E-07 72.4 14.2 36 270-305 136-171 (564)
239 TIGR03197 MnmC_Cterm tRNA U-34 97.1 0.00048 1E-08 77.0 5.2 57 448-519 139-195 (381)
240 PF07992 Pyr_redox_2: Pyridine 97.1 0.00053 1.2E-08 68.9 4.8 32 273-304 1-32 (201)
241 PRK09754 phenylpropionate diox 97.1 0.0069 1.5E-07 68.2 14.2 35 272-306 4-40 (396)
242 PRK05335 tRNA (uracil-5-)-meth 97.1 0.00048 1E-08 76.8 4.4 34 272-305 3-36 (436)
243 PF06100 Strep_67kDa_ant: Stre 97.1 0.014 3E-07 65.7 15.7 55 455-512 218-273 (500)
244 PRK08294 phenol 2-monooxygenas 97.1 0.00049 1.1E-08 81.9 4.7 37 268-304 29-66 (634)
245 COG3349 Uncharacterized conser 97.1 0.00053 1.1E-08 77.0 4.6 36 273-308 2-37 (485)
246 TIGR01438 TGR thioredoxin and 97.0 0.00053 1.1E-08 79.2 4.6 33 271-303 2-34 (484)
247 PRK05868 hypothetical protein; 97.0 0.00057 1.2E-08 76.2 4.6 33 273-305 3-35 (372)
248 KOG1335 Dihydrolipoamide dehyd 97.0 0.00078 1.7E-08 72.2 4.4 35 270-304 38-72 (506)
249 PLN02568 polyamine oxidase 96.9 0.0009 2E-08 78.0 5.4 38 270-307 4-46 (539)
250 PF13434 K_oxygenase: L-lysine 96.9 0.0034 7.4E-08 69.0 9.5 35 271-305 2-37 (341)
251 PLN02676 polyamine oxidase 96.9 0.00091 2E-08 77.2 5.2 38 270-307 25-63 (487)
252 PLN02927 antheraxanthin epoxid 96.9 0.001 2.2E-08 78.7 5.4 37 268-304 78-114 (668)
253 KOG0405 Pyridine nucleotide-di 96.9 0.0017 3.6E-08 68.9 6.2 35 269-303 18-52 (478)
254 PRK06475 salicylate hydroxylas 96.9 0.0014 3.1E-08 73.8 6.2 33 273-305 4-36 (400)
255 PF00996 GDI: GDP dissociation 96.8 0.001 2.3E-08 74.7 4.7 42 269-310 2-43 (438)
256 PRK12416 protoporphyrinogen ox 96.8 0.0011 2.3E-08 76.3 4.6 36 273-308 3-44 (463)
257 TIGR00137 gid_trmFO tRNA:m(5)U 96.8 0.0011 2.4E-08 74.3 4.4 34 272-305 1-34 (433)
258 PF13454 NAD_binding_9: FAD-NA 96.8 0.031 6.7E-07 54.2 13.9 31 275-305 1-36 (156)
259 PRK07845 flavoprotein disulfid 96.8 0.0013 2.8E-08 75.6 5.0 32 273-304 3-34 (466)
260 KOG2614 Kynurenine 3-monooxyge 96.8 0.0012 2.6E-08 71.9 4.3 33 272-304 3-35 (420)
261 TIGR03315 Se_ygfK putative sel 96.7 0.0014 3E-08 80.7 4.9 36 270-305 536-571 (1012)
262 COG1148 HdrA Heterodisulfide r 96.7 0.0016 3.5E-08 71.8 4.7 36 271-306 124-159 (622)
263 KOG4716 Thioredoxin reductase 96.6 0.002 4.4E-08 67.9 3.9 36 268-303 16-51 (503)
264 TIGR03219 salicylate_mono sali 96.5 0.0037 8E-08 70.8 6.3 33 273-305 2-35 (414)
265 PF00070 Pyr_redox: Pyridine n 96.5 0.004 8.6E-08 53.0 4.9 33 274-306 2-34 (80)
266 PLN02529 lysine-specific histo 96.5 0.0031 6.6E-08 75.6 5.4 37 270-306 159-195 (738)
267 PLN02328 lysine-specific histo 96.5 0.0032 6.9E-08 75.9 5.5 38 269-306 236-273 (808)
268 TIGR03862 flavo_PP4765 unchara 96.4 0.011 2.5E-07 65.4 9.0 92 402-517 54-145 (376)
269 KOG1399 Flavin-containing mono 96.4 0.0031 6.8E-08 71.3 4.3 35 271-305 6-40 (448)
270 PRK12779 putative bifunctional 96.3 0.0031 6.7E-08 78.1 4.5 36 270-305 305-340 (944)
271 PRK11749 dihydropyrimidine deh 96.2 0.0054 1.2E-07 70.4 5.5 37 270-306 139-175 (457)
272 PRK09853 putative selenate red 96.2 0.0042 9.1E-08 76.3 4.6 36 270-305 538-573 (1019)
273 PRK12778 putative bifunctional 96.2 0.0058 1.2E-07 74.6 5.8 35 270-304 430-464 (752)
274 PRK12769 putative oxidoreducta 96.2 0.0048 1E-07 74.1 5.0 36 270-305 326-361 (654)
275 TIGR02374 nitri_red_nirB nitri 96.1 0.049 1.1E-06 66.8 13.4 58 455-525 193-250 (785)
276 PRK08255 salicylyl-CoA 5-hydro 96.0 0.0055 1.2E-07 74.8 4.4 34 273-306 2-37 (765)
277 PLN02852 ferredoxin-NADP+ redu 96.0 0.0085 1.9E-07 68.8 5.5 36 270-305 25-62 (491)
278 PRK04965 NADH:flavorubredoxin 95.9 0.083 1.8E-06 59.0 12.8 33 272-304 142-174 (377)
279 PRK14989 nitrite reductase sub 95.9 0.086 1.9E-06 64.9 13.8 59 455-524 198-256 (847)
280 PRK12814 putative NADPH-depend 95.8 0.011 2.3E-07 71.0 5.6 37 270-306 192-228 (652)
281 PRK06567 putative bifunctional 95.8 0.0079 1.7E-07 73.2 4.4 35 270-304 382-416 (1028)
282 PLN03000 amine oxidase 95.8 0.0099 2.1E-07 71.9 5.0 39 270-308 183-221 (881)
283 PRK12770 putative glutamate sy 95.8 0.013 2.8E-07 64.8 5.6 36 270-305 17-52 (352)
284 PLN02976 amine oxidase 95.7 0.011 2.4E-07 74.1 5.2 38 269-306 691-728 (1713)
285 TIGR01318 gltD_gamma_fam gluta 95.6 0.013 2.8E-07 67.4 5.0 36 270-305 140-175 (467)
286 TIGR01317 GOGAT_sm_gam glutama 95.5 0.016 3.5E-07 67.0 5.2 35 271-305 143-177 (485)
287 PRK12809 putative oxidoreducta 95.5 0.013 2.9E-07 70.1 4.5 37 270-306 309-345 (639)
288 KOG0685 Flavin-containing amin 95.1 0.023 4.9E-07 63.2 4.6 39 270-308 20-59 (498)
289 KOG2403 Succinate dehydrogenas 95.1 0.044 9.6E-07 61.7 6.9 35 269-303 53-87 (642)
290 KOG3855 Monooxygenase involved 95.1 0.021 4.6E-07 62.2 4.2 37 269-305 34-74 (481)
291 COG1252 Ndh NADH dehydrogenase 95.0 0.2 4.2E-06 56.0 11.7 53 456-525 221-274 (405)
292 PRK13984 putative oxidoreducta 94.8 0.033 7.3E-07 66.3 5.4 37 270-306 282-318 (604)
293 KOG4405 GDP dissociation inhib 94.7 0.035 7.5E-07 60.3 4.6 41 268-308 5-45 (547)
294 TIGR01292 TRX_reduct thioredox 94.7 0.42 9.1E-06 51.0 13.0 56 459-521 191-246 (300)
295 KOG1439 RAB proteins geranylge 94.6 0.019 4.1E-07 62.3 2.3 42 270-311 3-44 (440)
296 PRK10262 thioredoxin reductase 94.5 0.47 1E-05 51.6 13.2 61 459-525 199-259 (321)
297 PTZ00188 adrenodoxin reductase 94.5 0.038 8.2E-07 62.9 4.5 35 272-306 40-75 (506)
298 KOG1276 Protoporphyrinogen oxi 94.4 0.041 8.9E-07 60.3 4.3 40 269-308 9-50 (491)
299 PTZ00318 NADH dehydrogenase-li 94.4 0.051 1.1E-06 61.8 5.3 37 270-306 9-45 (424)
300 COG5044 MRS6 RAB proteins gera 94.3 0.053 1.1E-06 58.4 4.7 41 270-310 5-45 (434)
301 PRK13512 coenzyme A disulfide 94.0 0.056 1.2E-06 61.7 4.5 33 273-305 3-37 (438)
302 COG0493 GltD NADPH-dependent g 93.8 0.058 1.2E-06 61.5 4.2 34 272-305 124-157 (457)
303 COG1206 Gid NAD(FAD)-utilizing 93.7 0.053 1.2E-06 57.4 3.4 32 273-304 5-36 (439)
304 PF02558 ApbA: Ketopantoate re 93.2 0.11 2.4E-06 49.7 4.5 31 274-304 1-31 (151)
305 PF13434 K_oxygenase: L-lysine 93.0 1.2 2.5E-05 49.1 12.7 37 270-306 189-227 (341)
306 COG2907 Predicted NAD/FAD-bind 92.8 0.095 2.1E-06 56.1 3.6 37 271-308 8-44 (447)
307 TIGR03169 Nterm_to_SelD pyridi 92.7 0.12 2.5E-06 57.4 4.4 34 273-306 1-37 (364)
308 COG0446 HcaD Uncharacterized N 92.0 0.16 3.5E-06 56.8 4.5 35 271-305 136-170 (415)
309 PF01210 NAD_Gly3P_dh_N: NAD-d 91.9 0.18 4E-06 48.8 4.2 31 274-304 2-32 (157)
310 KOG3851 Sulfide:quinone oxidor 91.2 0.19 4.2E-06 53.1 3.6 37 268-304 36-74 (446)
311 PF02737 3HCDH_N: 3-hydroxyacy 91.2 0.26 5.6E-06 49.0 4.4 31 274-304 2-32 (180)
312 PRK05708 2-dehydropantoate 2-r 90.7 0.25 5.4E-06 53.5 4.2 32 273-304 4-35 (305)
313 PRK04965 NADH:flavorubredoxin 90.7 0.28 6.1E-06 54.7 4.7 63 451-525 189-251 (377)
314 PRK06249 2-dehydropantoate 2-r 90.6 0.32 6.9E-06 52.9 4.9 32 273-304 7-38 (313)
315 COG0569 TrkA K+ transport syst 90.6 0.28 6.1E-06 50.6 4.2 32 273-304 2-33 (225)
316 KOG0399 Glutamate synthase [Am 90.4 0.45 9.8E-06 57.8 6.0 38 269-306 1783-1820(2142)
317 COG1252 Ndh NADH dehydrogenase 90.3 0.31 6.8E-06 54.4 4.5 71 705-778 256-330 (405)
318 PF03721 UDPG_MGDP_dh_N: UDP-g 90.2 0.34 7.3E-06 48.4 4.2 31 274-304 3-33 (185)
319 KOG1800 Ferredoxin/adrenodoxin 89.5 0.4 8.7E-06 52.1 4.3 34 272-305 21-56 (468)
320 PRK09754 phenylpropionate diox 89.4 0.4 8.7E-06 53.9 4.6 33 273-305 146-178 (396)
321 PRK06129 3-hydroxyacyl-CoA deh 88.6 0.46 1E-05 51.5 4.2 32 273-304 4-35 (308)
322 PRK05976 dihydrolipoamide dehy 88.5 0.53 1.1E-05 54.3 4.8 33 273-305 182-214 (472)
323 PRK06522 2-dehydropantoate 2-r 88.4 0.5 1.1E-05 50.8 4.4 30 274-303 3-32 (304)
324 PRK12921 2-dehydropantoate 2-r 88.4 0.48 1E-05 51.0 4.2 29 274-302 3-31 (305)
325 KOG0404 Thioredoxin reductase 88.0 0.55 1.2E-05 47.4 3.8 36 268-303 5-40 (322)
326 TIGR01350 lipoamide_DH dihydro 87.9 0.6 1.3E-05 53.6 4.8 34 272-305 171-204 (461)
327 PRK07251 pyridine nucleotide-d 87.9 0.66 1.4E-05 52.9 5.1 33 273-305 159-191 (438)
328 KOG1336 Monodehydroascorbate/f 87.9 5.6 0.00012 44.8 11.9 58 455-524 266-323 (478)
329 TIGR02053 MerA mercuric reduct 87.3 0.69 1.5E-05 53.2 4.8 34 272-305 167-200 (463)
330 PRK06912 acoL dihydrolipoamide 87.0 0.77 1.7E-05 52.7 5.0 33 273-305 172-204 (458)
331 PRK06467 dihydrolipoamide dehy 87.0 0.75 1.6E-05 53.0 4.9 33 273-305 176-208 (471)
332 PRK07846 mycothione reductase; 86.9 0.74 1.6E-05 52.8 4.8 33 273-305 168-200 (451)
333 PRK08293 3-hydroxybutyryl-CoA 86.8 0.73 1.6E-05 49.4 4.4 32 273-304 5-36 (287)
334 PF13738 Pyr_redox_3: Pyridine 86.7 0.69 1.5E-05 46.3 4.0 33 272-304 168-200 (203)
335 PRK09260 3-hydroxybutyryl-CoA 86.7 0.71 1.5E-05 49.5 4.2 31 274-304 4-34 (288)
336 COG1249 Lpd Pyruvate/2-oxoglut 86.5 0.87 1.9E-05 52.0 4.9 34 273-306 175-208 (454)
337 PRK06370 mercuric reductase; V 86.5 0.84 1.8E-05 52.5 4.9 33 273-305 173-205 (463)
338 PRK01438 murD UDP-N-acetylmura 86.4 0.77 1.7E-05 53.1 4.6 32 273-304 18-49 (480)
339 PRK07066 3-hydroxybutyryl-CoA 86.4 0.79 1.7E-05 49.9 4.4 31 274-304 10-40 (321)
340 TIGR01421 gluta_reduc_1 glutat 86.3 0.77 1.7E-05 52.6 4.4 33 273-305 168-200 (450)
341 PRK06115 dihydrolipoamide dehy 86.2 0.92 2E-05 52.2 5.1 33 273-305 176-208 (466)
342 TIGR02354 thiF_fam2 thiamine b 86.0 0.95 2.1E-05 45.8 4.5 33 271-303 21-54 (200)
343 PRK07819 3-hydroxybutyryl-CoA 85.9 0.86 1.9E-05 48.9 4.3 32 273-304 7-38 (286)
344 PRK07818 dihydrolipoamide dehy 85.9 0.96 2.1E-05 52.1 5.0 33 273-305 174-206 (466)
345 PRK08229 2-dehydropantoate 2-r 85.8 0.81 1.8E-05 50.2 4.2 32 273-304 4-35 (341)
346 PRK02705 murD UDP-N-acetylmura 85.7 0.88 1.9E-05 52.2 4.6 32 274-305 3-34 (459)
347 PRK06416 dihydrolipoamide dehy 85.6 0.99 2.1E-05 51.9 5.0 33 273-305 174-206 (462)
348 TIGR03385 CoA_CoA_reduc CoA-di 85.6 0.88 1.9E-05 51.7 4.5 32 273-304 139-170 (427)
349 PF01593 Amino_oxidase: Flavin 85.5 0.72 1.6E-05 51.4 3.7 28 281-308 1-28 (450)
350 PRK13512 coenzyme A disulfide 85.1 0.93 2E-05 51.7 4.4 33 273-305 150-182 (438)
351 PRK06718 precorrin-2 dehydroge 84.8 1.2 2.6E-05 45.2 4.5 31 272-302 11-41 (202)
352 PF02254 TrkA_N: TrkA-N domain 84.7 1.3 2.8E-05 40.1 4.4 31 274-304 1-31 (116)
353 KOG2755 Oxidoreductase [Genera 84.7 0.71 1.5E-05 47.8 2.8 32 274-305 2-35 (334)
354 PRK05249 soluble pyridine nucl 84.6 1 2.3E-05 51.6 4.5 32 273-304 177-208 (461)
355 PRK07530 3-hydroxybutyryl-CoA 84.5 1.1 2.4E-05 48.2 4.4 32 273-304 6-37 (292)
356 PRK06292 dihydrolipoamide dehy 84.4 1.2 2.6E-05 51.1 4.9 33 273-305 171-203 (460)
357 PF01488 Shikimate_DH: Shikima 84.3 1.3 2.8E-05 41.7 4.3 33 271-303 12-45 (135)
358 PRK06035 3-hydroxyacyl-CoA deh 84.1 1.2 2.5E-05 47.9 4.4 32 273-304 5-36 (291)
359 PRK06719 precorrin-2 dehydroge 84.1 1.3 2.9E-05 42.9 4.3 30 272-301 14-43 (157)
360 PRK06327 dihydrolipoamide dehy 84.0 1.3 2.8E-05 51.1 5.0 33 273-305 185-217 (475)
361 COG1893 ApbA Ketopantoate redu 83.9 1.2 2.5E-05 48.3 4.2 31 274-304 3-33 (307)
362 PRK14106 murD UDP-N-acetylmura 83.9 1.2 2.6E-05 51.0 4.6 33 272-304 6-38 (450)
363 PRK07688 thiamine/molybdopteri 83.8 1.3 2.7E-05 48.8 4.5 35 270-304 23-58 (339)
364 PRK12475 thiamine/molybdopteri 83.8 1.3 2.7E-05 48.8 4.5 34 271-304 24-58 (338)
365 PRK04148 hypothetical protein; 83.7 1.1 2.4E-05 42.1 3.4 31 273-304 19-49 (134)
366 PRK15116 sulfur acceptor prote 83.7 1.3 2.7E-05 46.9 4.3 35 270-304 29-64 (268)
367 PF00899 ThiF: ThiF family; I 83.7 1.3 2.8E-05 41.6 4.0 33 272-304 3-36 (135)
368 TIGR03452 mycothione_red mycot 83.6 1.2 2.6E-05 51.1 4.4 33 273-305 171-203 (452)
369 COG4529 Uncharacterized protei 83.6 1.2 2.6E-05 50.2 4.2 34 272-305 2-38 (474)
370 PRK14620 NAD(P)H-dependent gly 83.5 1.2 2.7E-05 48.6 4.3 30 274-303 3-32 (326)
371 PRK14618 NAD(P)H-dependent gly 83.2 1.3 2.9E-05 48.3 4.4 32 273-304 6-37 (328)
372 TIGR01424 gluta_reduc_2 glutat 83.2 1.4 3.1E-05 50.3 4.8 33 273-305 168-200 (446)
373 cd01483 E1_enzyme_family Super 83.1 1.6 3.4E-05 41.4 4.4 31 274-304 2-33 (143)
374 PRK09564 coenzyme A disulfide 82.8 1.5 3.2E-05 50.0 4.8 34 272-305 150-183 (444)
375 COG1004 Ugd Predicted UDP-gluc 82.6 1.4 2.9E-05 48.6 4.0 31 274-304 3-33 (414)
376 PTZ00153 lipoamide dehydrogena 82.6 1.5 3.3E-05 52.5 4.9 33 273-305 314-346 (659)
377 COG1748 LYS9 Saccharopine dehy 82.4 1.5 3.2E-05 48.8 4.3 32 273-304 3-35 (389)
378 PRK05808 3-hydroxybutyryl-CoA 82.3 1.4 3.1E-05 46.9 4.2 32 273-304 5-36 (282)
379 PRK07845 flavoprotein disulfid 82.3 1.8 3.8E-05 49.9 5.2 33 273-305 179-211 (466)
380 PRK06116 glutathione reductase 82.2 1.6 3.5E-05 50.0 4.8 33 273-305 169-201 (450)
381 cd01487 E1_ThiF_like E1_ThiF_l 82.1 1.8 3.8E-05 42.8 4.4 31 274-304 2-33 (174)
382 cd01075 NAD_bind_Leu_Phe_Val_D 82.0 1.8 3.9E-05 43.8 4.5 31 273-303 30-60 (200)
383 TIGR03140 AhpF alkyl hydropero 81.8 1.4 3.1E-05 51.4 4.2 34 272-305 353-386 (515)
384 PRK08010 pyridine nucleotide-d 81.8 1.9 4E-05 49.3 5.1 33 273-305 160-192 (441)
385 TIGR01470 cysG_Nterm siroheme 81.6 1.9 4.1E-05 43.8 4.5 31 273-303 11-41 (205)
386 PRK06130 3-hydroxybutyryl-CoA 81.4 1.7 3.6E-05 47.1 4.4 32 273-304 6-37 (311)
387 PRK14989 nitrite reductase sub 81.3 2 4.3E-05 53.2 5.3 34 273-306 147-180 (847)
388 TIGR02374 nitri_red_nirB nitri 81.3 1.6 3.6E-05 53.6 4.6 34 273-306 142-175 (785)
389 PRK13748 putative mercuric red 81.2 1.9 4.1E-05 50.9 5.0 32 273-304 272-303 (561)
390 PF13241 NAD_binding_7: Putati 81.2 1.1 2.4E-05 40.0 2.4 32 272-303 8-39 (103)
391 PRK14694 putative mercuric red 81.1 2.1 4.6E-05 49.2 5.3 32 273-304 180-211 (468)
392 TIGR03143 AhpF_homolog putativ 81.0 1.5 3.3E-05 51.6 4.2 34 272-305 144-177 (555)
393 PLN02507 glutathione reductase 80.9 1.7 3.6E-05 50.6 4.4 32 273-304 205-236 (499)
394 PTZ00058 glutathione reductase 80.9 1.8 3.9E-05 51.0 4.6 33 273-305 239-271 (561)
395 PRK15317 alkyl hydroperoxide r 80.9 1.6 3.5E-05 51.0 4.2 34 273-306 353-386 (517)
396 KOG1336 Monodehydroascorbate/f 80.7 1.8 3.9E-05 48.6 4.2 58 271-328 213-270 (478)
397 PRK00094 gpsA NAD(P)H-dependen 80.4 1.9 4.1E-05 46.8 4.4 32 273-304 3-34 (325)
398 TIGR02356 adenyl_thiF thiazole 80.2 2.2 4.9E-05 43.1 4.5 35 270-304 20-55 (202)
399 TIGR01763 MalateDH_bact malate 80.2 2 4.4E-05 46.5 4.4 31 273-303 3-34 (305)
400 PLN02546 glutathione reductase 80.1 1.9 4E-05 50.8 4.4 32 273-304 254-285 (558)
401 PLN02545 3-hydroxybutyryl-CoA 79.9 2.1 4.6E-05 46.0 4.4 31 274-304 7-37 (295)
402 TIGR03026 NDP-sugDHase nucleot 79.7 2 4.3E-05 48.7 4.3 32 273-304 2-33 (411)
403 PRK14727 putative mercuric red 79.6 2.1 4.5E-05 49.5 4.5 31 273-303 190-220 (479)
404 PRK11064 wecC UDP-N-acetyl-D-m 79.5 2 4.3E-05 48.7 4.3 32 273-304 5-36 (415)
405 PRK12770 putative glutamate sy 79.2 2.1 4.5E-05 47.3 4.2 32 273-304 174-206 (352)
406 TIGR01316 gltA glutamate synth 79.1 2.1 4.6E-05 49.0 4.4 32 273-304 274-305 (449)
407 TIGR02279 PaaC-3OHAcCoADH 3-hy 79.1 2.1 4.6E-05 49.7 4.4 32 273-304 7-38 (503)
408 cd01080 NAD_bind_m-THF_DH_Cycl 78.9 2.6 5.7E-05 41.4 4.3 34 270-303 43-77 (168)
409 PF01262 AlaDh_PNT_C: Alanine 78.8 2.7 5.8E-05 41.2 4.4 33 272-304 21-53 (168)
410 TIGR00518 alaDH alanine dehydr 78.5 3 6.4E-05 46.5 5.2 34 271-304 167-200 (370)
411 TIGR03736 PRTRC_ThiF PRTRC sys 78.0 2.8 6E-05 43.7 4.4 35 270-304 10-55 (244)
412 KOG2304 3-hydroxyacyl-CoA dehy 78.0 2.7 5.8E-05 42.7 4.0 37 268-304 8-44 (298)
413 PRK12549 shikimate 5-dehydroge 77.7 2.8 6.1E-05 44.9 4.5 33 272-304 128-161 (284)
414 PRK08328 hypothetical protein; 77.6 2.8 6.1E-05 43.4 4.4 34 271-304 27-61 (231)
415 TIGR01438 TGR thioredoxin and 77.6 2.8 6E-05 48.6 4.8 31 273-303 182-212 (484)
416 PTZ00052 thioredoxin reductase 77.5 2.4 5.2E-05 49.3 4.3 31 273-303 184-214 (499)
417 COG1250 FadB 3-hydroxyacyl-CoA 77.5 2.4 5.3E-05 45.6 3.9 31 274-304 6-36 (307)
418 PRK14619 NAD(P)H-dependent gly 77.5 3 6.5E-05 45.2 4.8 32 273-304 6-37 (308)
419 cd05311 NAD_bind_2_malic_enz N 77.4 2.6 5.6E-05 43.5 4.0 33 272-304 26-61 (226)
420 TIGR01915 npdG NADPH-dependent 77.3 2.9 6.2E-05 42.9 4.3 31 274-304 3-34 (219)
421 PRK11730 fadB multifunctional 77.2 2.4 5.3E-05 51.5 4.3 32 273-304 315-346 (715)
422 TIGR02437 FadB fatty oxidation 76.9 2.5 5.5E-05 51.3 4.3 32 273-304 315-346 (714)
423 TIGR02355 moeB molybdopterin s 76.8 3.2 6.9E-05 43.3 4.5 34 271-304 24-58 (240)
424 PRK08268 3-hydroxy-acyl-CoA de 76.7 2.8 6E-05 48.8 4.4 31 274-304 10-40 (507)
425 PTZ00318 NADH dehydrogenase-li 76.5 3 6.6E-05 47.3 4.7 33 273-305 175-221 (424)
426 cd00757 ThiF_MoeB_HesA_family 76.5 3.2 6.8E-05 42.9 4.4 34 271-304 21-55 (228)
427 PRK08644 thiamine biosynthesis 76.4 3.2 6.9E-05 42.4 4.3 35 270-304 27-62 (212)
428 cd05292 LDH_2 A subgroup of L- 76.1 3.1 6.8E-05 45.1 4.4 32 273-304 2-35 (308)
429 PRK12548 shikimate 5-dehydroge 76.1 3 6.6E-05 44.7 4.3 31 273-303 128-159 (289)
430 PRK07417 arogenate dehydrogena 76.0 2.8 6.1E-05 44.7 4.0 31 274-304 3-33 (279)
431 PRK05690 molybdopterin biosynt 76.0 3.4 7.3E-05 43.2 4.4 35 270-304 31-66 (245)
432 PRK12831 putative oxidoreducta 75.5 3.1 6.7E-05 47.9 4.4 33 272-304 282-314 (464)
433 cd01485 E1-1_like Ubiquitin ac 75.3 3.6 7.7E-05 41.6 4.3 34 271-304 19-53 (198)
434 cd00401 AdoHcyase S-adenosyl-L 75.1 3.4 7.4E-05 46.5 4.5 33 272-304 203-235 (413)
435 PRK02472 murD UDP-N-acetylmura 75.0 3.3 7E-05 47.3 4.4 32 273-304 7-38 (447)
436 PRK07531 bifunctional 3-hydrox 75.0 3.2 6.9E-05 48.2 4.3 32 273-304 6-37 (495)
437 TIGR01423 trypano_reduc trypan 74.9 3.6 7.7E-05 47.7 4.7 33 273-305 189-224 (486)
438 cd01486 Apg7 Apg7 is an E1-lik 74.8 3.9 8.4E-05 43.9 4.5 31 274-304 2-33 (307)
439 PRK08223 hypothetical protein; 74.0 3.8 8.1E-05 43.8 4.2 35 270-304 26-61 (287)
440 KOG2018 Predicted dinucleotide 74.0 3.6 7.8E-05 43.6 3.9 30 274-303 77-107 (430)
441 TIGR01381 E1_like_apg7 E1-like 73.7 3.8 8.3E-05 48.2 4.5 34 271-304 338-372 (664)
442 TIGR02441 fa_ox_alpha_mit fatt 73.6 3.4 7.4E-05 50.3 4.3 32 273-304 337-368 (737)
443 cd01492 Aos1_SUMO Ubiquitin ac 73.5 4.2 9.1E-05 41.0 4.3 34 271-304 21-55 (197)
444 PLN02353 probable UDP-glucose 73.5 3.7 8E-05 47.2 4.3 32 273-304 3-36 (473)
445 cd01484 E1-2_like Ubiquitin ac 73.1 4.2 9E-05 42.2 4.2 31 274-304 2-33 (234)
446 cd05291 HicDH_like L-2-hydroxy 72.9 4.2 9.1E-05 44.0 4.4 31 274-304 3-35 (306)
447 cd01339 LDH-like_MDH L-lactate 72.8 3.6 7.9E-05 44.3 3.9 31 274-304 1-32 (300)
448 cd01490 Ube1_repeat2 Ubiquitin 72.8 4.1 8.8E-05 46.1 4.3 31 274-304 2-38 (435)
449 COG2085 Predicted dinucleotide 72.2 4.4 9.5E-05 41.0 3.9 30 274-303 4-33 (211)
450 PLN02520 bifunctional 3-dehydr 71.9 4.3 9.4E-05 47.5 4.5 31 273-303 381-411 (529)
451 KOG3923 D-aspartate oxidase [A 71.8 2.4 5.3E-05 44.8 2.1 31 272-302 4-41 (342)
452 TIGR02853 spore_dpaA dipicolin 71.6 4.6 9.9E-05 43.3 4.2 33 272-304 152-184 (287)
453 COG2072 TrkA Predicted flavopr 71.5 4.4 9.4E-05 46.4 4.3 34 272-305 176-209 (443)
454 cd05191 NAD_bind_amino_acid_DH 71.2 6.7 0.00015 33.6 4.5 31 272-302 24-55 (86)
455 PF03446 NAD_binding_2: NAD bi 71.2 5.3 0.00012 38.8 4.3 32 273-304 3-34 (163)
456 cd01489 Uba2_SUMO Ubiquitin ac 71.1 4.6 0.0001 43.7 4.1 31 274-304 2-33 (312)
457 PRK06223 malate dehydrogenase; 70.9 5 0.00011 43.4 4.4 32 273-304 4-36 (307)
458 cd01488 Uba3_RUB Ubiquitin act 70.8 5.2 0.00011 42.9 4.4 31 274-304 2-33 (291)
459 TIGR00507 aroE shikimate 5-deh 70.7 5.1 0.00011 42.5 4.4 32 273-304 119-150 (270)
460 PRK08017 oxidoreductase; Provi 70.6 5.3 0.00012 41.4 4.5 31 274-304 5-36 (256)
461 cd00755 YgdL_like Family of ac 70.5 5.4 0.00012 41.3 4.3 34 271-304 11-45 (231)
462 COG3486 IucD Lysine/ornithine 70.4 6.6 0.00014 43.5 5.1 39 268-306 2-41 (436)
463 PRK15057 UDP-glucose 6-dehydro 70.3 4.6 0.0001 45.3 4.1 30 274-304 3-32 (388)
464 PF13478 XdhC_C: XdhC Rossmann 70.1 5 0.00011 37.9 3.7 31 274-304 1-31 (136)
465 PF00670 AdoHcyase_NAD: S-aden 69.9 5.2 0.00011 38.8 3.8 33 272-304 24-56 (162)
466 PTZ00082 L-lactate dehydrogena 69.9 5.8 0.00013 43.2 4.7 34 272-305 7-41 (321)
467 PRK11749 dihydropyrimidine deh 69.7 5.2 0.00011 45.9 4.5 33 272-304 274-307 (457)
468 TIGR01505 tartro_sem_red 2-hyd 69.6 4.9 0.00011 43.0 4.0 31 274-304 2-32 (291)
469 PF03807 F420_oxidored: NADP o 69.5 6.8 0.00015 34.0 4.2 31 274-304 2-36 (96)
470 cd01078 NAD_bind_H4MPT_DH NADP 69.4 6.3 0.00014 39.4 4.5 32 272-303 29-61 (194)
471 PRK08762 molybdopterin biosynt 69.0 5.8 0.00013 44.3 4.5 34 271-304 135-169 (376)
472 COG0686 Ald Alanine dehydrogen 68.9 4.6 0.0001 43.1 3.4 35 270-304 167-201 (371)
473 PRK09496 trkA potassium transp 68.9 5.3 0.00011 45.6 4.3 32 273-304 2-33 (453)
474 PLN02172 flavin-containing mon 68.8 4.9 0.00011 46.2 4.0 33 272-304 205-237 (461)
475 PRK11154 fadJ multifunctional 68.7 5.1 0.00011 48.7 4.3 32 273-304 311-343 (708)
476 TIGR00936 ahcY adenosylhomocys 68.5 6 0.00013 44.5 4.4 33 272-304 196-228 (406)
477 PRK07878 molybdopterin biosynt 68.1 5.8 0.00013 44.5 4.3 35 270-304 41-76 (392)
478 TIGR02440 FadJ fatty oxidation 68.0 5.5 0.00012 48.3 4.4 32 273-304 306-338 (699)
479 PRK00258 aroE shikimate 5-dehy 68.0 6.2 0.00014 42.0 4.3 33 272-304 124-157 (278)
480 PTZ00142 6-phosphogluconate de 67.7 5.3 0.00012 45.9 3.9 33 272-304 2-34 (470)
481 PRK06153 hypothetical protein; 67.6 6.3 0.00014 43.7 4.3 34 271-304 176-210 (393)
482 PRK06505 enoyl-(acyl carrier p 67.5 6.9 0.00015 41.4 4.6 31 273-303 9-42 (271)
483 PRK14027 quinate/shikimate deh 67.3 6.9 0.00015 41.9 4.5 32 272-303 128-160 (283)
484 PRK05600 thiamine biosynthesis 67.2 6.2 0.00013 43.9 4.2 35 270-304 40-75 (370)
485 PRK12550 shikimate 5-dehydroge 67.1 6.7 0.00015 41.7 4.3 32 273-304 124-156 (272)
486 PRK06057 short chain dehydroge 67.0 7 0.00015 40.6 4.5 32 273-304 9-41 (255)
487 PRK11199 tyrA bifunctional cho 66.9 6.3 0.00014 44.0 4.2 31 273-303 100-131 (374)
488 PRK05476 S-adenosyl-L-homocyst 66.9 7 0.00015 44.2 4.6 33 272-304 213-245 (425)
489 TIGR01809 Shik-DH-AROM shikima 66.5 6.9 0.00015 41.8 4.3 32 272-303 126-158 (282)
490 COG0287 TyrA Prephenate dehydr 66.5 7.5 0.00016 41.5 4.5 32 273-304 5-36 (279)
491 PRK07831 short chain dehydroge 66.3 7.3 0.00016 40.7 4.4 32 273-304 19-52 (262)
492 PRK10669 putative cation:proto 66.2 7.4 0.00016 45.9 4.9 34 271-304 417-450 (558)
493 PRK07326 short chain dehydroge 66.1 7.8 0.00017 39.6 4.5 32 273-304 8-40 (237)
494 PRK08306 dipicolinate synthase 66.0 7.3 0.00016 42.0 4.4 34 271-304 152-185 (296)
495 PRK05597 molybdopterin biosynt 65.9 6.9 0.00015 43.3 4.3 34 271-304 28-62 (355)
496 PRK07411 hypothetical protein; 65.8 7 0.00015 43.9 4.4 35 270-304 37-72 (390)
497 PRK15461 NADH-dependent gamma- 65.7 7.1 0.00015 42.0 4.2 32 273-304 3-34 (296)
498 PRK04308 murD UDP-N-acetylmura 65.5 7.5 0.00016 44.4 4.7 32 273-304 7-38 (445)
499 PRK07774 short chain dehydroge 65.5 7.9 0.00017 39.9 4.5 32 273-304 8-40 (250)
500 PRK08177 short chain dehydroge 65.4 8.5 0.00018 39.2 4.6 31 274-304 4-35 (225)
No 1
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=2.6e-64 Score=587.32 Aligned_cols=477 Identities=21% Similarity=0.243 Sum_probs=336.3
Q ss_pred CCCcccEEEECCCchHHHHHHHHHh-CCCeEEEEcCCCCCCCCC-c---cc-----ccCCchhhhhhhCCccccCCCcee
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAK-AGYKVLVLEKGSYCARSN-L---SL-----LEGKTMDQMYLAGGMLATDDMGVI 337 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~-~G~kVlVLEkG~~~~~~~-~---~~-----~~~~~~~~~y~~~~~~~~~~~~~~ 337 (781)
++.+|||||||||++|+++|.+||+ +|++|||||+|+.....+ . +. .....+.|.|...+.....++.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRME 81 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeee
Confidence 4567999999999999999999999 799999999997542111 1 10 011223455555444334556788
Q ss_pred eeecceecCcchhcccccccCChhhHHHHHHHhcCCCcChhhhhHHHHhhhhhccc-------------cCCCccCCccH
Q 003990 338 LLAGSTVGGGSTINWSASIKTPKHVANEWCDEYELKLFESDLYKEAMEVVCERMGV-------------QSEVEEEGFNN 404 (781)
Q Consensus 338 ~~~G~~lGGgs~in~~~~~r~~~~~~~~W~~~~gl~~~~~~~~~~~~~~v~~~l~v-------------~~~~~~~~~~~ 404 (781)
+.+|++|||+|.+|++.++|+.+.+|+.|....|.+.|+++++.+++++++..+.- ...........
T Consensus 82 ~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~ 161 (560)
T PRK02106 82 CPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLF 161 (560)
T ss_pred cccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHH
Confidence 89999999999999999999999999999977677889999999999998876521 10001123345
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCcceeccccCCCCcccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEE
Q 003990 405 AVLRRGCKELGYPVNNIPRNSPPDHYCGWCCLGCKDGSKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATG 484 (781)
Q Consensus 405 ~~l~~~~~~lG~~~~~~p~n~~~~~~~g~~~~gc~~g~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~G 484 (781)
+.+.++++++|++... +.+...+.+++.|...|..|.|.++..+||.++.+++|++|++++.|++|+++++ +++|
T Consensus 162 ~~~~~a~~~lG~~~~~-~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~----~a~G 236 (560)
T PRK02106 162 QAFVEAGVQAGYPRTD-DLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK----RAVG 236 (560)
T ss_pred HHHHHHHHHcCCCcCC-CCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC----eEEE
Confidence 7888999999998765 3454445566677778999999999999999998899999999999999999743 8999
Q ss_pred EEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC---------------CcccccccccccceeeccccCCCC
Q 003990 485 VAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN---------------ANIGKNLHLHPVTMAWGYFPKTSS 549 (781)
Q Consensus 485 V~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~---------------p~VG~nL~dHp~~~~~~~~~~~~~ 549 (781)
|++.+. .+....+.||+||||||+|+||+|||+|||++ |+||+||+|||.+.+...+++...
T Consensus 237 V~~~~~---~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~~~~ 313 (560)
T PRK02106 237 VEYERG---GGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQPVS 313 (560)
T ss_pred EEEEeC---CcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCCCcc
Confidence 999862 23445567899999999999999999999987 569999999999877655443321
Q ss_pred CCC-Ccccc----ccCC---CCCceeeecccccCcCCCCCCceecCCC-CCccchhccCCCCcchhHHHHHhhcCCceEE
Q 003990 550 SGE-WPEEK----KTSY---EGGIMTAMSTTVGNFGKSGYGAVIQTPA-LHPGMFSSLMPWVSGADIKLRMCKFSRTAHI 620 (781)
Q Consensus 550 ~~~-~~~~~----~~~~---~gg~~ts~~~~~~~~~~~~~~~~le~~~-~~p~~~~~~~p~~~g~~~~~~~~~~~~~~~~ 620 (781)
... ...+. ...| ..|+......... +....... ..|.....+.|.......... .........
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 385 (560)
T PRK02106 314 LYPALKWWNKPKIGAEWLFTGTGLGASNHFEAG-------GFIRSRAGVDWPNIQYHFLPVAIRYDGSNA-VKGHGFQAH 385 (560)
T ss_pred cccccchhhhhHHHHHHHhcCCCCcccccccee-------eEEecCCCCCCCCeEEEEeeccccccCCCC-CCCCeEEEE
Confidence 000 00000 0000 1111110000000 00000000 011111111111000000000 000111223
Q ss_pred EEEeecCCCceEecC-------cc--ccCCCChhhHHHHHHHHHHHHHHHHHcCccccc-ccccCCccccccCCCHHHHH
Q 003990 621 FVLARDQGSGTVNSP-------YS--ISYQMEAMDEENLKKGIEKILRILAAAGAEEIG-THHCKGKIINVKKASSEEFE 690 (781)
Q Consensus 621 ~~l~~d~s~G~V~~~-------p~--i~y~~~~~D~~~l~~~~~~~~~i~~~~ga~~i~-~~~~~~~~~~~~~~~~~~~~ 690 (781)
+.+.+|.++|+|++. |. ++|..++.|++.+.++++.+++++.+++++.+. .+..++. ...++++++
T Consensus 386 ~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~----~~~~~~~~~ 461 (560)
T PRK02106 386 VGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREISPGA----DVQTDEEID 461 (560)
T ss_pred EEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccccCCCc----ccCCHHHHH
Confidence 456789999999863 43 589999999999999999999999888765532 1122221 124788999
Q ss_pred HHHHhhccCCCCCCCCCccccccccCccCCCCCCCccccCCCceeccCCcEEecCCcCCCCCCCCChhHHHHHHHHHHHH
Q 003990 691 RFVKEESSRPLRDLSTPLSSAHQMGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQS 770 (781)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~s~H~~GTcrMG~~~~~gVVD~~~rv~g~~nL~V~DaSvfPt~~g~NP~lTi~AlA~~iA~~ 770 (781)
+|+++.. .+++|++||||||.+| +||||++|||||++||||+|+||||+.+++||++||||+|+++|++
T Consensus 462 ~~i~~~~----------~~~~H~~GTcrMG~d~-~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~ 530 (560)
T PRK02106 462 AFVREHA----------ETAYHPSCTCKMGTDP-MAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADL 530 (560)
T ss_pred HHHHhcc----------CcCcccCCCeecCCCC-CeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHH
Confidence 9998742 5789999999999987 8999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q 003990 771 VLDVL 775 (781)
Q Consensus 771 ia~~l 775 (781)
|.+..
T Consensus 531 I~~~~ 535 (560)
T PRK02106 531 IRGRT 535 (560)
T ss_pred HhccC
Confidence 87643
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=2.1e-63 Score=576.54 Aligned_cols=472 Identities=19% Similarity=0.209 Sum_probs=331.9
Q ss_pred cEEEECCCchHHHHHHHHHhCC-CeEEEEcCCCCCCCCC-c---cc-----ccCCchhhhhhhCCccccCCCceeeeecc
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAG-YKVLVLEKGSYCARSN-L---SL-----LEGKTMDQMYLAGGMLATDDMGVILLAGS 342 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G-~kVlVLEkG~~~~~~~-~---~~-----~~~~~~~~~y~~~~~~~~~~~~~~~~~G~ 342 (781)
||||||||++|+++|.+||++| ++|||||+|+.....+ + +. ...+.+.|.|.+.+.....++.+.+.+|+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 80 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK 80 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence 8999999999999999999998 7999999998543211 1 10 11223456666655555567788999999
Q ss_pred eecCcchhcccccccCChhhHHHHHHHhcCCCcChhhhhHHHHhhhhhccccCC------------CccCCccHHHHHHH
Q 003990 343 TVGGGSTINWSASIKTPKHVANEWCDEYELKLFESDLYKEAMEVVCERMGVQSE------------VEEEGFNNAVLRRG 410 (781)
Q Consensus 343 ~lGGgs~in~~~~~r~~~~~~~~W~~~~gl~~~~~~~~~~~~~~v~~~l~v~~~------------~~~~~~~~~~l~~~ 410 (781)
++||+|.+|+++++|+++.+|+.|....|.+.|.++++.+++++++..++.... ........+.+.++
T Consensus 81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a 160 (532)
T TIGR01810 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA 160 (532)
T ss_pred ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence 999999999999999999999999876788889999999999999877653210 01112335788899
Q ss_pred HHHcCCCCCCCCCCCCCCCcceeccccCCCCcccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEe
Q 003990 411 CKELGYPVNNIPRNSPPDHYCGWCCLGCKDGSKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQ 490 (781)
Q Consensus 411 ~~~lG~~~~~~p~n~~~~~~~g~~~~gc~~g~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~ 490 (781)
++++|++..... +.....+++.|...|..|.|+++..+|+.++.+++|++|++++.|++|+++++ +|+||++.+
T Consensus 161 ~~~~G~~~~~~~-~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~----ra~GV~~~~- 234 (532)
T TIGR01810 161 GVEAGYNKTPDV-NGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN----RATGVEFKK- 234 (532)
T ss_pred HHHcCCCccCCC-CCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC----eEEEEEEEe-
Confidence 999999876643 44344456667778899999999999999998889999999999999999754 899999875
Q ss_pred eCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC---------------CcccccccccccceeeccccCCCCCCCCcc
Q 003990 491 YMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN---------------ANIGKNLHLHPVTMAWGYFPKTSSSGEWPE 555 (781)
Q Consensus 491 ~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~---------------p~VG~nL~dHp~~~~~~~~~~~~~~~~~~~ 555 (781)
.+ +....+.||+||||||+++||+||++|||++ |+||+||+|||.+.+...+++.........
T Consensus 235 -~~-~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~~~~ 312 (532)
T TIGR01810 235 -GG-RKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYPSLN 312 (532)
T ss_pred -CC-cEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCcccccccc
Confidence 11 2233456799999999999999999999987 569999999999877655543321000000
Q ss_pred c-----cccCC---CCCceeeecccccCcCCCCCCceecCCCCCccchhccCCCCcchhHHHHHhhcCCceEEEEEeecC
Q 003990 556 E-----KKTSY---EGGIMTAMSTTVGNFGKSGYGAVIQTPALHPGMFSSLMPWVSGADIKLRMCKFSRTAHIFVLARDQ 627 (781)
Q Consensus 556 ~-----~~~~~---~gg~~ts~~~~~~~~~~~~~~~~le~~~~~p~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~l~~d~ 627 (781)
. ....| ..++... ..+ ...++. ..+.....|.....+.|+.......... ..........+.+|.
T Consensus 313 ~~~~~~~~~~~~~~~~g~~~~--~~~---~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~ 385 (532)
T TIGR01810 313 WLKQPFIGAQWLFGRKGAGAS--NHF---EGGGFV-RSNDDVDYPNIQYHFLPVAIRYDGTKAP-KAHGFQVHVGPMYSN 385 (532)
T ss_pred hhhhhHHHHHHHhcCCCCccc--ccc---ceeEEE-ecCCCCCCCCeEEEEEeeeeccCCCCCC-CCCcEEEEEeecCCC
Confidence 0 00000 1111110 000 000000 0000001121111112211000000000 000111233567899
Q ss_pred CCceEecC-------c--cccCCCChhhHHHHHHHHHHHHHHHHHcCccccc-ccccCCccccccCCCHHHHHHHHHhhc
Q 003990 628 GSGTVNSP-------Y--SISYQMEAMDEENLKKGIEKILRILAAAGAEEIG-THHCKGKIINVKKASSEEFERFVKEES 697 (781)
Q Consensus 628 s~G~V~~~-------p--~i~y~~~~~D~~~l~~~~~~~~~i~~~~ga~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (781)
|+|+|+++ | +++|..++.|++.++++++.+++++.+.+...+. .+..+++ ...+|+++++|++..
T Consensus 386 srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~----~~~~d~~~~~~ir~~- 460 (532)
T TIGR01810 386 SRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEISPGP----EVQTDEEIDEFVRRH- 460 (532)
T ss_pred CceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccccCCCC----CCCCHHHHHHHHhhh-
Confidence 99999864 2 3689999999999999999999999877655432 1122221 125789999999974
Q ss_pred cCCCCCCCCCccccccccCccCCC-CCCCccccCCCceeccCCcEEecCCcCCCCCCCCChhHHHHHHHHHHHHHHH
Q 003990 698 SRPLRDLSTPLSSAHQMGSCRMGI-DPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQSVLD 773 (781)
Q Consensus 698 ~~~~~~~~~~~~s~H~~GTcrMG~-~~~~gVVD~~~rv~g~~nL~V~DaSvfPt~~g~NP~lTi~AlA~~iA~~ia~ 773 (781)
..+++|++||||||+ ++.+||||+++||||++||||+||||||+.+++||++|+||+|+++|+.|.+
T Consensus 461 ---------~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~ 528 (532)
T TIGR01810 461 ---------GETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRG 528 (532)
T ss_pred ---------cccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhc
Confidence 257899999999997 7889999999999999999999999999999999999999888777666653
No 3
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=7.5e-62 Score=540.80 Aligned_cols=490 Identities=20% Similarity=0.244 Sum_probs=346.5
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhC-CCeEEEEcCCCCCCC-CCcc----cccCCchhhhhhhCCccc----cCCCcee
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKA-GYKVLVLEKGSYCAR-SNLS----LLEGKTMDQMYLAGGMLA----TDDMGVI 337 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~-G~kVlVLEkG~~~~~-~~~~----~~~~~~~~~~y~~~~~~~----~~~~~~~ 337 (781)
...+||+||||||.+||++|.+|+|. ..+|||||+|+..+. .+.+ ......++|.|.+.+... ..++.+.
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~ 133 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRCY 133 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCcee
Confidence 55789999999999999999999997 689999999986511 1222 234455778887766544 6788899
Q ss_pred eeecceecCcchhcccccccCChhhHHHHHHHhcCCCcChhhhhHHHHhhhhhccccCCCc---------------cCCc
Q 003990 338 LLAGSTVGGGSTINWSASIKTPKHVANEWCDEYELKLFESDLYKEAMEVVCERMGVQSEVE---------------EEGF 402 (781)
Q Consensus 338 ~~~G~~lGGgs~in~~~~~r~~~~~~~~W~~~~gl~~~~~~~~~~~~~~v~~~l~v~~~~~---------------~~~~ 402 (781)
+.+|+++||+|++|+|+|.|+...||++|.+. +.|.|++++..++|.++++...-..... ....
T Consensus 134 wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~-gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~ 212 (623)
T KOG1238|consen 134 WPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAE-GNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNN 212 (623)
T ss_pred cCccceecccccccceEEecCCccchHHHHHh-cCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCc
Confidence 99999999999999999999999999999965 7778999999999998875532211110 1112
Q ss_pred cHHHHHHHHHHcCCCCCCCCCCCCCCCcceeccccCCCCcccchhhhchHHHhh-CCCeEEecCcEEEEEEccCCCCcce
Q 003990 403 NNAVLRRGCKELGYPVNNIPRNSPPDHYCGWCCLGCKDGSKKGTSETWLVDLVN-SGNSAILPGCEAIEVLHKKRRDRNV 481 (781)
Q Consensus 403 ~~~~l~~~~~~lG~~~~~~p~n~~~~~~~g~~~~gc~~g~k~s~~~~~L~~a~~-~gn~~i~~~~~V~~I~~~~gg~~~r 481 (781)
....+.++.+++|....+ +|.....+..+.....+.+.+.++..+|+..+.. ++|+.+..++.|++|+.|.. +++
T Consensus 213 ~~~~~~~ag~e~G~~~~D--~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~--~~~ 288 (623)
T KOG1238|consen 213 LFTAFHRAGTEIGGSIFD--RNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPA--GKR 288 (623)
T ss_pred hhhHhHHhHHhcCCCccC--CCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCC--Cce
Confidence 235678888999965543 5666555666667778899999999999999887 88999999999999999864 359
Q ss_pred EEEEEEEEeeCCceeEEEEec-cEEEEeccCCCCHHHHHHcCCCC---------------Ccccccccccccceeecccc
Q 003990 482 ATGVAFEFQYMGAKDICVVES-KVTIVACGALSTPNLLKRSGLKN---------------ANIGKNLHLHPVTMAWGYFP 545 (781)
Q Consensus 482 a~GV~~~~~~~g~g~~~~i~A-k~VVLAaGai~Tp~LLl~SGi~~---------------p~VG~nL~dHp~~~~~~~~~ 545 (781)
+.||++.. ..++..+|+| |+||||||||+||+|||+||||+ |+||+||+||+...++-..+
T Consensus 289 a~gv~~~~---~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~ 365 (623)
T KOG1238|consen 289 AKGVEFVR---DGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFST 365 (623)
T ss_pred EEEEEEEe---cCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceeeecC
Confidence 99999986 1257889999 89999999999999999999974 78999999999987755544
Q ss_pred CCCCCCCC-----ccc-cccCCCCCceeeecccccCcCCCCCCc-eecCCCCCccchhccCCCCcch-------hHHHHH
Q 003990 546 KTSSSGEW-----PEE-KKTSYEGGIMTAMSTTVGNFGKSGYGA-VIQTPALHPGMFSSLMPWVSGA-------DIKLRM 611 (781)
Q Consensus 546 ~~~~~~~~-----~~~-~~~~~~gg~~ts~~~~~~~~~~~~~~~-~le~~~~~p~~~~~~~p~~~g~-------~~~~~~ 611 (781)
.+.+.... ..+ .......|++.+.+.....|-.+.+.. ....|++.-...+..++-..+. ++.+.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 445 (623)
T KOG1238|consen 366 NPVELSLIRLVGITTVGQYLEGGSGPLASPGVETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALGEIYQAL 445 (623)
T ss_pred CCccccccccccchHHHHHHHcCCCCcccCcceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcchHHHHh
Confidence 33211100 000 000011233322210000000000000 0001111100011111101111 112222
Q ss_pred h-h--cCC-ceEEEEEeecCCCceEecC-------cc--ccCCCChhhHHHHHHHHHHHHHHHHHcCcccccccccCCcc
Q 003990 612 C-K--FSR-TAHIFVLARDQGSGTVNSP-------YS--ISYQMEAMDEENLKKGIEKILRILAAAGAEEIGTHHCKGKI 678 (781)
Q Consensus 612 ~-~--~~~-~~~~~~l~~d~s~G~V~~~-------p~--i~y~~~~~D~~~l~~~~~~~~~i~~~~ga~~i~~~~~~~~~ 678 (781)
. . ... ...+..+.+|+|+|++.++ |+ .||..+++|++.+++|++.+.++.+...+.+++......+.
T Consensus 446 ~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~ 525 (623)
T KOG1238|consen 446 FGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPV 525 (623)
T ss_pred hhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccC
Confidence 1 1 111 2234456899999999864 44 48999999999999999999999887776666554443333
Q ss_pred cccc---CCCHHHHHHHHHhhccCCCCCCCCCccccccccCccCCCC-CCCccccCCCceeccCCcEEecCCcCCCCCCC
Q 003990 679 INVK---KASSEEFERFVKEESSRPLRDLSTPLSSAHQMGSCRMGID-PKTSVVNQMGETWGVEGLYLADTSVFPTALGV 754 (781)
Q Consensus 679 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~H~~GTcrMG~~-~~~gVVD~~~rv~g~~nL~V~DaSvfPt~~g~ 754 (781)
..|. -.+|+.+++|++.. ..+.+|+.|||+||++ +.++|||+++||||++||||+|||+||.++++
T Consensus 526 ~~c~~~~~~sd~yw~c~~R~~----------~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psg 595 (623)
T KOG1238|consen 526 PGCDLLAFLSDAYWECFCRHT----------VVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSG 595 (623)
T ss_pred CCcccccCCCHHHHHHHHHhc----------cceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCC
Confidence 3443 45889999999985 4899999999999974 56799999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhh
Q 003990 755 NPMVTVQAIAYCTAQSVLDVLRRKK 779 (781)
Q Consensus 755 NP~lTi~AlA~~iA~~ia~~l~~~~ 779 (781)
||+.|+ ++|||+.|++||+++
T Consensus 596 N~nA~v----~MIgek~ad~Ik~~~ 616 (623)
T KOG1238|consen 596 NPNAPV----MMIGEKAADMIKEEW 616 (623)
T ss_pred CccHHH----HHHHHHHHHHHHHHh
Confidence 997555 556677777777664
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-57 Score=518.22 Aligned_cols=475 Identities=23% Similarity=0.299 Sum_probs=336.0
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCC------CCcccc-cCCchhhhhhhCCccccCCCceeeee
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCAR------SNLSLL-EGKTMDQMYLAGGMLATDDMGVILLA 340 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~------~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~ 340 (781)
+..+||+||||||.+|+++|.+|+++|++|+|||+|+.... ..+... ..+...|.|...+.....++.+.+.+
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~r 83 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWPR 83 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccCCCCccccccc
Confidence 55789999999999999999999988999999999974322 112222 22256677777665566778899999
Q ss_pred cceecCcchhcccccccCChhhHHHHHHHhcCCCcChhhhhHHHHhhhhhccccCCC----------------ccCCccH
Q 003990 341 GSTVGGGSTINWSASIKTPKHVANEWCDEYELKLFESDLYKEAMEVVCERMGVQSEV----------------EEEGFNN 404 (781)
Q Consensus 341 G~~lGGgs~in~~~~~r~~~~~~~~W~~~~gl~~~~~~~~~~~~~~v~~~l~v~~~~----------------~~~~~~~ 404 (781)
|+++||+|.+|++.++|..+.+|+.|....|.+.|.+++..++|++.+..+++.... .......
T Consensus 84 gk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~~ 163 (542)
T COG2303 84 GKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIA 163 (542)
T ss_pred cCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHHH
Confidence 999999999999999999999999999888888888899999999998766653220 0112235
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCcceeccccCCCCcccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEE
Q 003990 405 AVLRRGCKELGYPVNNIPRNSPPDHYCGWCCLGCKDGSKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATG 484 (781)
Q Consensus 405 ~~l~~~~~~lG~~~~~~p~n~~~~~~~g~~~~gc~~g~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~G 484 (781)
..+.++++++|++..+.+.....+-.|.+|...| .|.|+++..+||..+++++|++|++++.|++|+++++ +++|
T Consensus 164 ~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~-~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~----r~~g 238 (542)
T COG2303 164 RAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTIC-NGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD----RAVG 238 (542)
T ss_pred HHHHHHHHHcCCCcCcccccCCCCCcccceeecc-CCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC----eeEE
Confidence 6778888999999988764444443444555556 9999999999999999999999999999999999976 9999
Q ss_pred EEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCC---------------CCcccccccccccceeeccccCCCC
Q 003990 485 VAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLK---------------NANIGKNLHLHPVTMAWGYFPKTSS 549 (781)
Q Consensus 485 V~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~---------------~p~VG~nL~dHp~~~~~~~~~~~~~ 549 (781)
|++...+.+. ....+.+++||||||+|+||+||++||++ +|.||+||+||....+....+....
T Consensus 239 v~~~~~~~~~-~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~~~~~~~ 317 (542)
T COG2303 239 VEVEIGDGGT-IETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEATEPTN 317 (542)
T ss_pred EEEEeCCCCc-eEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhheeccCccc
Confidence 9998632111 34555679999999999999999999986 4679999999999876433322210
Q ss_pred CCCCccccccC---------CCCCceeeecccccCcCCCCCCceecCCCCCccchhccCCCCcchhHHHHHhhcCCceEE
Q 003990 550 SGEWPEEKKTS---------YEGGIMTAMSTTVGNFGKSGYGAVIQTPALHPGMFSSLMPWVSGADIKLRMCKFSRTAHI 620 (781)
Q Consensus 550 ~~~~~~~~~~~---------~~gg~~ts~~~~~~~~~~~~~~~~le~~~~~p~~~~~~~p~~~g~~~~~~~~~~~~~~~~ 620 (781)
.......... ...|...+..... .|... +.....|+..- .+ .-.++... ...........
T Consensus 318 -~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-gf~~~--~~~~~~p~~~~-~~-~~~~~~~~-----~~~~~~~~~~~ 386 (542)
T COG2303 318 -DSVLSLFSKLGIGADRYLLTRDGPGATNHFEG-GFVRS--GPAGEYPDGQY-HF-APLPLAIR-----AAGAEHGFTLH 386 (542)
T ss_pred -cccccccccccccceeEEeecCCCcccccccc-ccccc--CccccCCCccc-cc-cccccccc-----ccccCCccEEe
Confidence 0000000000 0011110000000 00000 01111111100 00 00111100 00111112233
Q ss_pred EEEeecCCCceEecC-------cc--ccCCCChhhHHHHHHHHHHHHHHHHHcCccc-ccccccCCccccccCCCHHHHH
Q 003990 621 FVLARDQGSGTVNSP-------YS--ISYQMEAMDEENLKKGIEKILRILAAAGAEE-IGTHHCKGKIINVKKASSEEFE 690 (781)
Q Consensus 621 ~~l~~d~s~G~V~~~-------p~--i~y~~~~~D~~~l~~~~~~~~~i~~~~ga~~-i~~~~~~~~~~~~~~~~~~~~~ 690 (781)
....++.++|.|... |. .+|..++.|++.+.++++..++++...-... ...+..+++. ..+++++.
T Consensus 387 ~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~~~~~~----~~~~~~~~ 462 (542)
T COG2303 387 VGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAELAPGPR----VTTDEDIS 462 (542)
T ss_pred eccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhhcCCCc----cccHHHHH
Confidence 456789999999653 33 4899999999999999999999987322222 2223333332 24677899
Q ss_pred HHHHhhccCCCCCCCCCccccccccCccCCCCCCCccccCCCceeccCCcEEecCCcCCCCCCCCChhHHHHHHHHHHHH
Q 003990 691 RFVKEESSRPLRDLSTPLSSAHQMGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCTAQS 770 (781)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~s~H~~GTcrMG~~~~~gVVD~~~rv~g~~nL~V~DaSvfPt~~g~NP~lTi~AlA~~iA~~ 770 (781)
+|++... .+.+|+|||||||.||..+|+|++|||||++||||+|||+||+++++||++||+|+|+++|++
T Consensus 463 ~~~~~~~----------~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~ 532 (542)
T COG2303 463 AAIRFLA----------RTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADH 532 (542)
T ss_pred HHHHhcc----------CccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHH
Confidence 9998753 688899999999999999999999999999999999999999999999999999999999988
Q ss_pred HHH
Q 003990 771 VLD 773 (781)
Q Consensus 771 ia~ 773 (781)
|..
T Consensus 533 I~~ 535 (542)
T COG2303 533 ILG 535 (542)
T ss_pred Hhh
Confidence 876
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=8.3e-54 Score=495.50 Aligned_cols=466 Identities=20% Similarity=0.251 Sum_probs=291.4
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCC-CCc--cc-ccCCchhhhhhhCCccccCCCceeeeecce
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCAR-SNL--SL-LEGKTMDQMYLAGGMLATDDMGVILLAGST 343 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~-~~~--~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~G~~ 343 (781)
.+.+|||||||+|.+||++|.+|++ +.+|||||+|+.... ... .. ......+|.|.........+..+.+.+|++
T Consensus 52 ~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~q~~~~~~~~~~~rGr~ 130 (587)
T PLN02785 52 GDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGVPFGNANVSFLENFHIGLADTSPTSASQAFISTDGVINARARV 130 (587)
T ss_pred ccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCCCCCCchhhhHHhhCCcccccCCccccccccCCCceeccccce
Confidence 4567999999999999999999999 699999999974211 110 00 011122454544333334466788999999
Q ss_pred ecCcchhcccccccCChhhHHHHHHHhcCCCcChhhhhHHHHhhhhhccccCCCccCCccHHHHHHHHHHcCCCCCCCCC
Q 003990 344 VGGGSTINWSASIKTPKHVANEWCDEYELKLFESDLYKEAMEVVCERMGVQSEVEEEGFNNAVLRRGCKELGYPVNNIPR 423 (781)
Q Consensus 344 lGGgs~in~~~~~r~~~~~~~~W~~~~gl~~~~~~~~~~~~~~v~~~l~v~~~~~~~~~~~~~l~~~~~~lG~~~~~~p~ 423 (781)
|||||++|+++|+|+.+.+++. ..|.++...++++++++..... +....+ ...+++++.++|++. .
T Consensus 131 LGGsS~iN~~~y~Rg~~~d~~~-------~GW~~~~~~~~~~~~e~~~~~~--~~~~~~-~~~~~~a~~e~G~~~----~ 196 (587)
T PLN02785 131 LGGGTCINAGFYSRASTRFIQK-------AGWDAKLVNESYPWVERQIVHW--PKVAPW-QAALRDSLLEVGVSP----F 196 (587)
T ss_pred ecchhhhcCeEEEeCCHHHhcc-------CCCCcccccchHHHHhcccccC--CCcChH-HHHHHHHHHHcCCCc----c
Confidence 9999999999999999998864 1233444445555554432111 111222 467889999999973 2
Q ss_pred CCC-C----CCcceeccccCCCCcccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEE
Q 003990 424 NSP-P----DHYCGWCCLGCKDGSKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDIC 498 (781)
Q Consensus 424 n~~-~----~~~~g~~~~gc~~g~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~ 498 (781)
|.. . +...|.+.+ ...|.|.++. .++ .+.+++|++|++++.|++|++++++...+++||++.+.+ ++..
T Consensus 197 n~~~~d~~~G~~~g~~i~-~~~g~R~saa-~l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~---g~~~ 270 (587)
T PLN02785 197 NGFTYDHVYGTKVGGTIF-DEFGRRHTAA-ELL-AAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDEN---GNQH 270 (587)
T ss_pred CCCCCCCccceeeeEEEe-CCCCEEcCHH-HHH-hhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECC---CceE
Confidence 211 1 112222221 1345555443 444 456678899999999999999864333489999998622 2333
Q ss_pred EE-----eccEEEEeccCCCCHHHHHHcCCCC---------------CcccccccccccceeeccccCCCCCCCCccccc
Q 003990 499 VV-----ESKVTIVACGALSTPNLLKRSGLKN---------------ANIGKNLHLHPVTMAWGYFPKTSSSGEWPEEKK 558 (781)
Q Consensus 499 ~i-----~Ak~VVLAaGai~Tp~LLl~SGi~~---------------p~VG~nL~dHp~~~~~~~~~~~~~~~~~~~~~~ 558 (781)
++ .+|+||||||+|+||+|||+|||++ |+||+||+|||...+....+..........+ +
T Consensus 271 ~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~~~~~~~~~~-~ 349 (587)
T PLN02785 271 QAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQSLIQTV-G 349 (587)
T ss_pred EEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCCCchhhhHhhh-h
Confidence 32 2489999999999999999999985 6899999999988764433322100000000 0
Q ss_pred cCCCCCceeeecccccCcCCCCCCcee-cCCCCCc--cchhccCCC-CcchhHHHHHh--------hcCCceEEEEEeec
Q 003990 559 TSYEGGIMTAMSTTVGNFGKSGYGAVI-QTPALHP--GMFSSLMPW-VSGADIKLRMC--------KFSRTAHIFVLARD 626 (781)
Q Consensus 559 ~~~~gg~~ts~~~~~~~~~~~~~~~~l-e~~~~~p--~~~~~~~p~-~~g~~~~~~~~--------~~~~~~~~~~l~~d 626 (781)
.. ..|.+...... +... ..... ....+.+ ..+....|- .....+..... .+.....+..+++|
T Consensus 350 ~~-~~g~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P 424 (587)
T PLN02785 350 IT-KMGVYIEASSG---FGQS-PDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGP 424 (587)
T ss_pred hh-ccccceecccc---cccC-chhhhhhccccccccccccccCcccccchhhhhhccCcccccccccccceEEEEecCC
Confidence 00 00111000000 0000 00000 0000000 000000000 00000000000 01001223456799
Q ss_pred CCCceEecC-------cc--ccCCCChhhHHHHHHHHHHHHHHHHHcCccccccc-ccCCc------------cccccCC
Q 003990 627 QGSGTVNSP-------YS--ISYQMEAMDEENLKKGIEKILRILAAAGAEEIGTH-HCKGK------------IINVKKA 684 (781)
Q Consensus 627 ~s~G~V~~~-------p~--i~y~~~~~D~~~l~~~~~~~~~i~~~~ga~~i~~~-~~~~~------------~~~~~~~ 684 (781)
.|+|+|++. |. ++|..++.|++.++++++.+++++.......+... ..+.+ ...+...
T Consensus 425 ~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 504 (587)
T PLN02785 425 ISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTN 504 (587)
T ss_pred CcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCCCCC
Confidence 999999864 33 58999999999999999999999987765443210 00000 0011124
Q ss_pred CHHHHHHHHHhhccCCCCCCCCCccccccccCccCCCCCCCccccCCCceeccCCcEEecCCcCCCCCCCCChhHHHHHH
Q 003990 685 SSEEFERFVKEESSRPLRDLSTPLSSAHQMGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIA 764 (781)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~s~H~~GTcrMG~~~~~gVVD~~~rv~g~~nL~V~DaSvfPt~~g~NP~lTi~AlA 764 (781)
+|+++++|+++. ..+.+|++|||+||. |||+++||||++||||||||+||+.+++||++|+||+|
T Consensus 505 ~d~~l~~~ir~~----------~~t~~H~~GTc~MG~-----VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~mia 569 (587)
T PLN02785 505 DTKSLEQFCKDT----------VITIWHYHGGCHVGK-----VVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMG 569 (587)
T ss_pred CHHHHHHHHHHh----------cccccCCcccccCCC-----eECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHH
Confidence 678999999984 367899999999994 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 003990 765 YCTAQSVLDVL 775 (781)
Q Consensus 765 ~~iA~~ia~~l 775 (781)
+++|++|.++.
T Consensus 570 er~A~~Il~~~ 580 (587)
T PLN02785 570 RYMGVKILRER 580 (587)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=1.2e-48 Score=443.89 Aligned_cols=452 Identities=17% Similarity=0.217 Sum_probs=290.1
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCCCC-----cccc--cCCchh--hh----hh--hCCc--------
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCARSN-----LSLL--EGKTMD--QM----YL--AGGM-------- 328 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~~~-----~~~~--~~~~~~--~~----y~--~~~~-------- 328 (781)
|||||||+|++|+++|+.|+++|++|+|||+|......- +... +.+... .. ++ +.+.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL 80 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence 799999999999999999999999999999998654210 0000 001000 00 00 0000
Q ss_pred -----------cccC-------CCcee---eeecceecCcchhcccccccCChhhHHHHHHHhcCCCcChhhhhHHHHhh
Q 003990 329 -----------LATD-------DMGVI---LLAGSTVGGGSTINWSASIKTPKHVANEWCDEYELKLFESDLYKEAMEVV 387 (781)
Q Consensus 329 -----------~~~~-------~~~~~---~~~G~~lGGgs~in~~~~~r~~~~~~~~W~~~~gl~~~~~~~~~~~~~~v 387 (781)
.... +.... ..+-+.+||+|.+|.+.+.|..+.++ .|.. .++| .+.+++.++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g~~-~dWP-I~y~eL~PyY~~A 157 (544)
T TIGR02462 81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PKLS-DDAA-EDDAEWDRLYTKA 157 (544)
T ss_pred CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cCCC-CCCC-CCHHHHHHHHHHH
Confidence 0000 00011 22446799999999999988887543 3332 3555 4678999999999
Q ss_pred hhhccccCCCccCCc-cHHHHHHHHHHc-CC-CCCCCCCCCCCCCcceeccccCCCCcccchhhhchHHHh----hCCCe
Q 003990 388 CERMGVQSEVEEEGF-NNAVLRRGCKEL-GY-PVNNIPRNSPPDHYCGWCCLGCKDGSKKGTSETWLVDLV----NSGNS 460 (781)
Q Consensus 388 ~~~l~v~~~~~~~~~-~~~~l~~~~~~l-G~-~~~~~p~n~~~~~~~g~~~~gc~~g~k~s~~~~~L~~a~----~~gn~ 460 (781)
+..++++........ ....+...++++ |. .+...|.. |..| +|+.+.|++...+.+..+. +++|+
T Consensus 158 e~~~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~PlA------~~~~--~c~~~ak~s~~~t~~~~~~~~~~~~~n~ 229 (544)
T TIGR02462 158 ESLIGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQPLPLA------CHRR--TDPTYVEWHSADTVFDLQPNDDAPSERF 229 (544)
T ss_pred HHHhCCCCCcCCCcccchhHHHHHHHHhccccccccCchh------hhcc--CCCccceecCCccchhhhhhhhccCCCE
Confidence 999999975332222 123444445555 44 33333322 3332 6888899887767777666 48999
Q ss_pred EEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC-------------Cc
Q 003990 461 AILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN-------------AN 527 (781)
Q Consensus 461 ~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~-------------p~ 527 (781)
+|++++.|++|+.++++ +.+|+||.+.+... ++..+++||.||||||+|+||+||++|+++. +.
T Consensus 230 ~l~~~a~v~~i~~d~~~-~~~v~~v~~~d~~~--g~~~~v~A~~vVLAagaIetpRLLL~S~~~~~~~p~gl~Nss~~g~ 306 (544)
T TIGR02462 230 TLLTNHRCTRLVRNETN-ESEIEAALVRDLLS--GDRFEIKADVYVLACGAVHNPQILVNSGFGQLGRPDPTNPPPLLPS 306 (544)
T ss_pred EEEcCCEEEEEEeCCCC-CceeEEEEEEECCC--CcEEEEECCEEEEccCchhhHHHHHhCCCCCCcCCCCcCCCCCCCC
Confidence 99999999999987542 13899999987422 4678899999999999999999999997752 57
Q ss_pred ccccccccccceeeccccCCCCCCCCccccccCCCCCceeeecccccCcCCCC--CCceecCCCCCccc---hhccCCCC
Q 003990 528 IGKNLHLHPVTMAWGYFPKTSSSGEWPEEKKTSYEGGIMTAMSTTVGNFGKSG--YGAVIQTPALHPGM---FSSLMPWV 602 (781)
Q Consensus 528 VG~nL~dHp~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~ts~~~~~~~~~~~~--~~~~le~~~~~p~~---~~~~~p~~ 602 (781)
|||||++|+...+.++++++.. ..+.+..+ .+.-+........... ....+......|.. +....||.
T Consensus 307 VGRnlmdh~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~w~ 379 (544)
T TIGR02462 307 LGRYITEQSMTFCQIVLSTELV----DSVRSDPR---GLDWWKEKVANHMMKHPEDPLPIPFRDPEPQVTTPFTEEHPWH 379 (544)
T ss_pred CCcchhcCCCccEEEEecchhh----hhccCCcc---ccccccccchhhhccccCCcccccccccCcccccccccccccc
Confidence 9999999999888777765421 00111100 0000000000000000 00000000000000 00112332
Q ss_pred cchhHHHHHhhcCC---------ceEE--EEEeecCCCceEecC-----------ccccCCCChhhHHHHHHHHHHHHHH
Q 003990 603 SGADIKLRMCKFSR---------TAHI--FVLARDQGSGTVNSP-----------YSISYQMEAMDEENLKKGIEKILRI 660 (781)
Q Consensus 603 ~g~~~~~~~~~~~~---------~~~~--~~l~~d~s~G~V~~~-----------p~i~y~~~~~D~~~l~~~~~~~~~i 660 (781)
. ........|.. ...+ +.-.-|....+|+++ |+|+|..+++|++.+.++++.+.++
T Consensus 380 ~--~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i 457 (544)
T TIGR02462 380 T--QIHRDAFSYGAVGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNV 457 (544)
T ss_pred h--hhhhhhhhcccccccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 1 11111111211 1111 222234556667653 4689999999999999999999999
Q ss_pred HHHcCcccccccccCCccccccCCCHHHHHHHHHhhccCCCCCCCCCccccccccCccCCCCCCCccccCCCceeccCCc
Q 003990 661 LAAAGAEEIGTHHCKGKIINVKKASSEEFERFVKEESSRPLRDLSTPLSSAHQMGSCRMGIDPKTSVVNQMGETWGVEGL 740 (781)
Q Consensus 661 ~~~~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~H~~GTcrMG~~~~~gVVD~~~rv~g~~nL 740 (781)
+.++|+....... .| .....+.|++||||||.+|++||||++|||||++||
T Consensus 458 ~~~~G~~~~~~~~-----------------~~------------~~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~NL 508 (544)
T TIGR02462 458 AAKIGGYLPGSLP-----------------QF------------MEPGLALHLAGTTRIGFDEQTTVANTDSKVHNFKNL 508 (544)
T ss_pred HHHcCCCcccccc-----------------cc------------cCCCccccCCCCeecCCCCCCceECCCCcEeCCCCe
Confidence 9999985332100 00 012468899999999999999999999999999999
Q ss_pred EEecCCcCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 003990 741 YLADTSVFPTALGVNPMVTVQAIAYCTAQSVLDVL 775 (781)
Q Consensus 741 ~V~DaSvfPt~~g~NP~lTi~AlA~~iA~~ia~~l 775 (781)
||+|+|+||+++++||++||||+|+++|++|.+.+
T Consensus 509 ~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 509 YVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred EEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998765
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=1.3e-41 Score=366.27 Aligned_cols=260 Identities=29% Similarity=0.433 Sum_probs=200.0
Q ss_pred ccEEEECCCchHHHHHHHHHhCC-CeEEEEcCCCCCCCCCc------ccccCCchhhhhhhCCccccCCCceeeeeccee
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAG-YKVLVLEKGSYCARSNL------SLLEGKTMDQMYLAGGMLATDDMGVILLAGSTV 344 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G-~kVlVLEkG~~~~~~~~------~~~~~~~~~~~y~~~~~~~~~~~~~~~~~G~~l 344 (781)
|||||||||++|+++|.+||++| ++|||||+|++...... .......+.+.|.+.+.....+..+.+.+|++|
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l 80 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKGL 80 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-ST
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccccccceeeeecceec
Confidence 89999999999999999999997 79999999998765441 111222344555555555566677788899999
Q ss_pred cCcchhcccccccCChhhHHHHHHHhcCCCcChhhhhHHHHhhh-------------hhccccCCCccCCccHHHHHHHH
Q 003990 345 GGGSTINWSASIKTPKHVANEWCDEYELKLFESDLYKEAMEVVC-------------ERMGVQSEVEEEGFNNAVLRRGC 411 (781)
Q Consensus 345 GGgs~in~~~~~r~~~~~~~~W~~~~gl~~~~~~~~~~~~~~v~-------------~~l~v~~~~~~~~~~~~~l~~~~ 411 (781)
||+|.+|+++++|+++.+|++|....+.+.|.++++.+++++++ +.+.+...........+.+.+++
T Consensus 81 GGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~ 160 (296)
T PF00732_consen 81 GGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDAA 160 (296)
T ss_dssp TGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHHH
T ss_pred CCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHHH
Confidence 99999999999999999999999988999899999999999999 44444222222334458899999
Q ss_pred HHcCCCCCCCCCCCCCCCcceecccc--CCCCcccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEE
Q 003990 412 KELGYPVNNIPRNSPPDHYCGWCCLG--CKDGSKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEF 489 (781)
Q Consensus 412 ~~lG~~~~~~p~n~~~~~~~g~~~~g--c~~g~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~ 489 (781)
+++|++. +.+...+..||+|..+ |+.+.|.++..+||.++++++|++|+++|+|++|+++.+ +.+|+||++.+
T Consensus 161 ~~~G~~~---~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~--~~~a~gV~~~~ 235 (296)
T PF00732_consen 161 EELGIPV---PQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGD--GGRATGVEYVD 235 (296)
T ss_dssp HHTTHHB---CSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETT--STEEEEEEEEE
T ss_pred HHcCCcc---ccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeecc--ccceeeeeeee
Confidence 9999983 3455567889999888 999999999999999999998999999999999988632 24999999997
Q ss_pred eeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC-Cc-------------cccccccccc
Q 003990 490 QYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN-AN-------------IGKNLHLHPV 537 (781)
Q Consensus 490 ~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~-p~-------------VG~nL~dHp~ 537 (781)
..+. .....+.||+||||||+|+||+||++|||++ ++ ||+||||||+
T Consensus 236 ~~~~-~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~~ 296 (296)
T PF00732_consen 236 NDGG-VQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHPV 296 (296)
T ss_dssp TTTS-EEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--EE
T ss_pred cCCc-ceeeeccceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhcccC
Confidence 3221 1345667899999999999999999999953 23 9999999985
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.94 E-value=2e-27 Score=227.91 Aligned_cols=131 Identities=38% Similarity=0.548 Sum_probs=100.9
Q ss_pred cCCCceEecCc---------cccCCCChhhHHHHHHHHHHHHHHHHHcCcccccc-cccCCc---cccccCCCHHHHHHH
Q 003990 626 DQGSGTVNSPY---------SISYQMEAMDEENLKKGIEKILRILAAAGAEEIGT-HHCKGK---IINVKKASSEEFERF 692 (781)
Q Consensus 626 d~s~G~V~~~p---------~i~y~~~~~D~~~l~~~~~~~~~i~~~~ga~~i~~-~~~~~~---~~~~~~~~~~~~~~~ 692 (781)
|+|+|+|++++ .++|+.++.|++.+.++++.+.+++.+. ++++.. ...++. .......+++++++|
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 57889998653 4699999999999999999999999988 555422 111111 111234577899999
Q ss_pred HHhhccCCCCCCCCCccccccccCccCCCCCCCccccCCCceeccCCcEEecCCcCCCCCCCCChhHHHHHHHHH
Q 003990 693 VKEESSRPLRDLSTPLSSAHQMGSCRMGIDPKTSVVNQMGETWGVEGLYLADTSVFPTALGVNPMVTVQAIAYCT 767 (781)
Q Consensus 693 ~~~~~~~~~~~~~~~~~s~H~~GTcrMG~~~~~gVVD~~~rv~g~~nL~V~DaSvfPt~~g~NP~lTi~AlA~~i 767 (781)
+++.. .+++|++||||||.++++||||++|||||++||||+||||||+++++||++|+||+|+|+
T Consensus 80 ~~~~~----------~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNV----------GTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHG----------EECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeecc----------ceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 99853 689999999999999999999999999999999999999999999999999999999874
No 9
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.45 E-value=4.2e-13 Score=151.68 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=49.6
Q ss_pred hhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHH
Q 003990 446 TSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKR 520 (781)
Q Consensus 446 ~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~ 520 (781)
....+...+.+.+ ++|+.+++|++|+.+++ +|+||++.+. ..++.++|+|+.||||+|++.. .++.+
T Consensus 143 ~~~~l~~~~~~~g-v~i~~~~~~~~Li~e~g----~V~Gv~~~~~--~~g~~~~i~A~aVIlAtGG~~~-~~~~~ 209 (417)
T PF00890_consen 143 LIEALAKAAEEAG-VDIRFNTRVTDLITEDG----RVTGVVAENP--ADGEFVRIKAKAVILATGGFGG-ELLRQ 209 (417)
T ss_dssp HHHHHHHHHHHTT-EEEEESEEEEEEEEETT----EEEEEEEEET--TTCEEEEEEESEEEE----BGG-HHHHH
T ss_pred HHHHHHHHHhhcC-eeeeccceeeeEEEeCC----ceeEEEEEEC--CCCeEEEEeeeEEEeccCcccc-ccccc
Confidence 3344455566777 99999999999999876 9999999953 2457889999999999999988 55544
No 10
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.43 E-value=1.6e-12 Score=150.14 Aligned_cols=65 Identities=15% Similarity=0.346 Sum_probs=48.2
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCH-HHHHH
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTP-NLLKR 520 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp-~LLl~ 520 (781)
..++..+.+.+ ++|++++.|++|+.+++ +|+||.+... .++..+|+||.||+|+|++..+ .++.+
T Consensus 194 ~~L~~~~~~~g-v~i~~~t~v~~l~~~~g----~V~Gv~~~~~---~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 194 DGLLKNVQERK-IPLFVNADVTKITEKDG----KVTGVKVKIN---GKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred HHHHHHHHHcC-CeEEeCCeeEEEEecCC----EEEEEEEEeC---CCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 34444455566 99999999999987654 8999988741 2245679999999999998754 45554
No 11
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.43 E-value=9.6e-13 Score=150.99 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=50.6
Q ss_pred hhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHc
Q 003990 447 SETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRS 521 (781)
Q Consensus 447 ~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~S 521 (781)
...+...+.+.| ++|+++++|++|+.+++ +++||.+.. ..++...|+||.||||+|++.++..|++.
T Consensus 134 ~~~l~~~~~~~g-v~i~~~t~v~~l~~~~g----~v~gv~~~~---~~g~~~~i~a~~VIlAtGg~~~n~~~~~~ 200 (466)
T PRK08274 134 VNALYRSAERLG-VEIRYDAPVTALELDDG----RFVGARAGS---AAGGAERIRAKAVVLAAGGFESNREWLRE 200 (466)
T ss_pred HHHHHHHHHHCC-CEEEcCCEEEEEEecCC----eEEEEEEEc---cCCceEEEECCEEEECCCCCCCCHHHHHh
Confidence 334444455555 99999999999998654 899998853 12345678999999999999987766665
No 12
>PRK07121 hypothetical protein; Validated
Probab=99.42 E-value=2.5e-12 Score=148.49 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=46.5
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEec-cEEEEeccCCCCHHHHH
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVES-KVTIVACGALSTPNLLK 519 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~A-k~VVLAaGai~Tp~LLl 519 (781)
.+...+.+.| ++|+++++|++|+.++++ +|+||++.. .++...|+| |.||||+|++....-|+
T Consensus 182 ~L~~~~~~~g-v~i~~~~~v~~l~~~~~g---~v~Gv~~~~----~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 182 PLAKRAAALG-VQIRYDTRATRLIVDDDG---RVVGVEARR----YGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHHHHHHhCC-CEEEeCCEEEEEEECCCC---CEEEEEEEe----CCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 3334444555 999999999999986432 899999864 234568999 99999999988544443
No 13
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.41 E-value=2.5e-12 Score=150.64 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=48.2
Q ss_pred hHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEecc-EEEEeccCCCC-HHHHHH
Q 003990 451 LVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESK-VTIVACGALST-PNLLKR 520 (781)
Q Consensus 451 L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak-~VVLAaGai~T-p~LLl~ 520 (781)
|..+.+..|++|++++.|++|+.+++| +|+||++.. .++...|+|+ .||||+|+|.. +.++.+
T Consensus 219 l~~~~~~~gv~i~~~~~~~~Li~d~~g---~V~Gv~~~~----~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 219 LRLALKDAGVPLWLDSPMTELITDPDG---AVVGAVVER----EGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred HHHHHHhCCceEEeCCEEEEEEECCCC---cEEEEEEEe----CCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 445555666999999999999987432 899999864 2356789996 69999999995 555554
No 14
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.38 E-value=5.7e-12 Score=146.81 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=59.1
Q ss_pred hhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCCC
Q 003990 447 SETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKNA 526 (781)
Q Consensus 447 ~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~p 526 (781)
..+++..|.++| ++|+++++|+.|..+++ +++||.+.+.. +++...|+|+.||+|||+ ++..|+...|+..|
T Consensus 152 ~~al~~~A~~~G-a~i~~~t~V~~i~~~~~----~v~gv~v~d~~--~g~~~~i~A~~VVnAaG~-wa~~l~~~~g~~~~ 223 (546)
T PRK11101 152 TAANMLDAKEHG-AQILTYHEVTGLIREGD----TVCGVRVRDHL--TGETQEIHAPVVVNAAGI-WGQHIAEYADLRIR 223 (546)
T ss_pred HHHHHHHHHhCC-CEEEeccEEEEEEEcCC----eEEEEEEEEcC--CCcEEEEECCEEEECCCh-hHHHHHHhcCCCCc
Confidence 345566677888 99999999999988765 89999987532 234568999999999996 68899887776543
Q ss_pred ---ccccccc
Q 003990 527 ---NIGKNLH 533 (781)
Q Consensus 527 ---~VG~nL~ 533 (781)
.-|..|.
T Consensus 224 i~p~kG~~lv 233 (546)
T PRK11101 224 MFPAKGSLLI 233 (546)
T ss_pred eeecceEEEE
Confidence 2355544
No 15
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.38 E-value=5.1e-12 Score=146.31 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=49.5
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEecc-EEEEeccCCCC-HHHHHHc
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESK-VTIVACGALST-PNLLKRS 521 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak-~VVLAaGai~T-p~LLl~S 521 (781)
..++..+.++.+++|+++++|++|+.+++ +|+||++.. .++...|+|+ .||||||++.. +.++.+-
T Consensus 177 ~~l~~~~~~~~gv~i~~~t~~~~Li~~~g----~v~Gv~~~~----~g~~~~i~A~k~VIlAtGG~~~n~~m~~~~ 244 (513)
T PRK12837 177 GRFLAALARFPNARLRLNTPLVELVVEDG----RVVGAVVER----GGERRRVRARRGVLLAAGGFEQNDDMRARY 244 (513)
T ss_pred HHHHHHHHhCCCCEEEeCCEEEEEEecCC----EEEEEEEEE----CCcEEEEEeCceEEEeCCCccCCHHHHHHh
Confidence 34555555555699999999999998754 899999864 2356789994 89999999974 4555543
No 16
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.36 E-value=8.6e-12 Score=145.70 Aligned_cols=36 Identities=39% Similarity=0.641 Sum_probs=34.2
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+.++||||||+|.+|+++|..++++|.+|+||||++
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 367999999999999999999999999999999987
No 17
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.34 E-value=1.8e-11 Score=142.65 Aligned_cols=62 Identities=11% Similarity=0.210 Sum_probs=46.2
Q ss_pred chHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEec-cEEEEeccCCCCHH-HHHH
Q 003990 450 WLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVES-KVTIVACGALSTPN-LLKR 520 (781)
Q Consensus 450 ~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~A-k~VVLAaGai~Tp~-LLl~ 520 (781)
++..+.+.| ++|+++++|++|+.+++ +|+||++.. .++...|+| |.||||+|+|.... ++.+
T Consensus 223 L~~~~~~~G-v~i~~~t~v~~Li~~~g----~V~GV~~~~----~g~~~~i~a~kaVILAtGGf~~n~em~~~ 286 (564)
T PRK12845 223 LFAGVLRAG-IPIWTETSLVRLTDDGG----RVTGAVVDH----RGREVTVTARRGVVLAAGGFDHDMEMRWK 286 (564)
T ss_pred HHHHHHHCC-CEEEecCEeeEEEecCC----EEEEEEEEE----CCcEEEEEcCCEEEEecCCccccHHHHHH
Confidence 344455565 99999999999987654 899998764 234567887 78999999999654 4443
No 18
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.34 E-value=1.1e-11 Score=155.45 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=44.7
Q ss_pred CCeEEecCcEEEEEEccCC-----CCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHH
Q 003990 458 GNSAILPGCEAIEVLHKKR-----RDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPN 516 (781)
Q Consensus 458 gn~~i~~~~~V~~I~~~~g-----g~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~ 516 (781)
.+++|+++++|++|+.+++ +...+|+||++.+..+..++...|+||.||||+|++....
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDH 623 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCc
Confidence 3499999999999998642 1124899999985211134667899999999999999754
No 19
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=8.6e-12 Score=145.85 Aligned_cols=58 Identities=9% Similarity=0.126 Sum_probs=45.5
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~ 513 (781)
.+...+.+.+ ++|++++.|++|+.+++ +|+||.+.+.. +++...|+||.||||+|++.
T Consensus 141 ~L~~~~~~~g-v~i~~~~~~~~Li~~~g----~v~Gv~~~~~~--~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 141 TLFERTSGLN-VDFYNEWFSLDLVTDNK----KVVGIVAMQMK--TLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHhCC-CEEEeCcEEEEEEEECC----EEEEEEEEECC--CCeEEEEEeCeEEECCCccc
Confidence 3444444554 99999999999998765 99999987632 23567899999999999986
No 20
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.33 E-value=1.4e-11 Score=145.60 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=43.6
Q ss_pred HhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 454 LVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 454 a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
.++..|++|++++.|++|+.+++ +|+||.+.+.. ++....|.||.||||+|++..
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g----~V~GV~~~~~~--~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDG----RARGIVARNLV--TGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCC----EEEEEEEEECC--CCcEEEEECCEEEECCCCccc
Confidence 33444599999999999998765 89999987521 235568999999999999864
No 21
>PLN02815 L-aspartate oxidase
Probab=99.32 E-value=1.1e-11 Score=144.73 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=46.2
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~ 513 (781)
.++..+.+.+|++|++++.|++|+.+++++..+|+||.+.+.. ++....|+||.||||+|++.
T Consensus 160 ~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~--~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 160 ALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTR--TGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcC--CCeEEEEEeceEEEcCCcce
Confidence 4444455565699999999999998643211259999987532 34567889999999999986
No 22
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.32 E-value=1.1e-11 Score=140.51 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=44.4
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
..++..+.++.|++|++++.|++|+.+++ +|+||.+.. . +....|+||.||||+|++..
T Consensus 132 ~~L~~~~~~~~gV~i~~~t~v~~Li~~~~----~v~Gv~~~~--~--g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 132 KILLKKVKKRKNITIIENCYLVDIIENDN----TCIGAICLK--D--NKQINIYSKVTILATGGIGG 190 (433)
T ss_pred HHHHHHHHhcCCCEEEECcEeeeeEecCC----EEEEEEEEE--C--CcEEEEEcCeEEEccCcccc
Confidence 34444455554699999999999987655 899988764 1 23467899999999999753
No 23
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.31 E-value=2.5e-11 Score=141.70 Aligned_cols=59 Identities=10% Similarity=0.195 Sum_probs=45.8
Q ss_pred HHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEec-cEEEEeccCCCCHHHHH
Q 003990 452 VDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVES-KVTIVACGALSTPNLLK 519 (781)
Q Consensus 452 ~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~A-k~VVLAaGai~Tp~LLl 519 (781)
..+.+.+ ++|+++++|++|+.+++ +|+||++.. .++...|+| +.||||+|++....=|+
T Consensus 216 ~~~~~~g-v~i~~~~~v~~Li~~~g----~v~Gv~~~~----~g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 216 EAALAAG-VPLWTNTPLTELIVEDG----RVVGVVVVR----DGREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHhCC-CEEEeCCEEEEEEEeCC----EEEEEEEEE----CCeEEEEEecceEEEecCCccCCHHHH
Confidence 3444555 99999999999998765 899999864 235678899 57999999999654433
No 24
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.30 E-value=1.5e-11 Score=135.19 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=50.3
Q ss_pred hhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC
Q 003990 446 TSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN 525 (781)
Q Consensus 446 ~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~ 525 (781)
....++..+.+.| ++|+++++|++|..+++ +++||.+.+ ..|+|+.||+|+|+ +++.|+..+|+..
T Consensus 149 l~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~----~v~gv~~~~--------g~i~ad~vV~a~G~-~s~~l~~~~~~~~ 214 (358)
T PF01266_consen 149 LIQALAAEAQRAG-VEIRTGTEVTSIDVDGG----RVTGVRTSD--------GEIRADRVVLAAGA-WSPQLLPLLGLDL 214 (358)
T ss_dssp HHHHHHHHHHHTT--EEEESEEEEEEEEETT----EEEEEEETT--------EEEEECEEEE--GG-GHHHHHHTTTTSS
T ss_pred hhhhhHHHHHHhh-hhccccccccchhhccc----ccccccccc--------cccccceeEecccc-cceeeeecccccc
Confidence 4445566666777 99999999999999876 788887652 24999999999996 7899999888755
No 25
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30 E-value=1.9e-11 Score=143.46 Aligned_cols=60 Identities=12% Similarity=0.220 Sum_probs=44.9
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
.++..+.+.+ ++|++++.|++|+.++++ +|+||.+.+.. +++...|+||.||||+|++..
T Consensus 148 ~L~~~~~~~g-i~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~--~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 148 TLYQQNLKNH-TTIFSEWYALDLVKNQDG---AVVGCTAICIE--TGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred HHHHHhhhcC-CEEEeCcEEEEEEECCCC---EEEEEEEEEcC--CCcEEEEEcCeEEECCCCccc
Confidence 3333344444 999999999999985322 89999986422 345678999999999999864
No 26
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.30 E-value=3e-11 Score=137.53 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=46.8
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHH
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLL 518 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LL 518 (781)
..+...+.+.| ++|+++++|++|+.++++ +++||++.. ..++...+++|.||+|+|++....-|
T Consensus 134 ~~l~~~~~~~g-v~i~~~~~v~~l~~~~~g---~v~Gv~~~~---~~g~~~~~~a~~VVlAtGg~~~n~~m 197 (439)
T TIGR01813 134 QKLYKKAKKEG-IDTRLNSKVEDLIQDDQG---TVVGVVVKG---KGKGIYIKAAKAVVLATGGFGSNKEM 197 (439)
T ss_pred HHHHHHHHHcC-CEEEeCCEeeEeEECCCC---cEEEEEEEe---CCCeEEEEecceEEEecCCCCCCHHH
Confidence 34444555666 999999999999986432 799999875 22344567889999999998864333
No 27
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.29 E-value=1.9e-11 Score=144.07 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=45.1
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEc-cCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLH-KKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~-~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
.+...+.+.+ ++|++++.|++|+. +++ +|.||.+.+.. +++...|+||.||||+|++..
T Consensus 171 ~L~~~a~~~g-v~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~--~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 171 TLYGQSLKYD-CNFFIEYFALDLIMDEDG----ECRGVIAMSME--DGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHHhCC-CEEEeceEEEEEEECCCC----EEEEEEEEECC--CCeEEEEECCcEEEeCCCCcc
Confidence 3444455555 99999999999998 444 89999986522 346678999999999999864
No 28
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.29 E-value=1.8e-11 Score=131.18 Aligned_cols=168 Identities=22% Similarity=0.302 Sum_probs=105.6
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccccCCchhhhhhhCCccccCCCceeeeecceecCcch
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCARSNLSLLEGKTMDQMYLAGGMLATDDMGVILLAGSTVGGGST 349 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~G~~lGGgs~ 349 (781)
..+||||||+|++|++||..++++|++|+|||+++... +.+.+ -|++.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~G--------------------------rKil~------sGgGr 49 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLG--------------------------RKILM------SGGGR 49 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcccc--------------------------ceeEe------cCCCC
Confidence 46899999999999999999999999999999998421 11111 13444
Q ss_pred hcccccccCChhhHHHHHHHhcCCCcChhhhhHHHHhhhhhccccCCCccCCccHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 003990 350 INWSASIKTPKHVANEWCDEYELKLFESDLYKEAMEVVCERMGVQSEVEEEGFNNAVLRRGCKELGYPVNNIPRNSPPDH 429 (781)
Q Consensus 350 in~~~~~r~~~~~~~~W~~~~gl~~~~~~~~~~~~~~v~~~l~v~~~~~~~~~~~~~l~~~~~~lG~~~~~~p~n~~~~~ 429 (781)
.|.... ..++++-.. .|.- ....... -..|.++.++++.+.+|++...- .+
T Consensus 50 CN~Tn~-----~~~~~~ls~--~p~~-~~fl~sa---------------l~~ft~~d~i~~~e~~Gi~~~e~------~~ 100 (408)
T COG2081 50 CNFTNS-----EAPDEFLSR--NPGN-GHFLKSA---------------LARFTPEDFIDWVEGLGIALKEE------DL 100 (408)
T ss_pred cccccc-----ccHHHHHHh--CCCc-chHHHHH---------------HHhCCHHHHHHHHHhcCCeeEEc------cC
Confidence 453322 123333222 1100 0001111 12356788999999999987642 12
Q ss_pred cceeccccCCCCcccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEec
Q 003990 430 YCGWCCLGCKDGSKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVAC 509 (781)
Q Consensus 430 ~~g~~~~gc~~g~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAa 509 (781)
+.-+ |....-.....+|+..+.+.| ++|+++++|..|..++. +..+.. .++ . +|+|+.+|||+
T Consensus 101 Gr~F----p~sdkA~~Iv~~ll~~~~~~g-V~i~~~~~v~~v~~~~~-------~f~l~t-~~g--~--~i~~d~lilAt 163 (408)
T COG2081 101 GRMF----PDSDKASPIVDALLKELEALG-VTIRTRSRVSSVEKDDS-------GFRLDT-SSG--E--TVKCDSLILAT 163 (408)
T ss_pred ceec----CCccchHHHHHHHHHHHHHcC-cEEEecceEEeEEecCc-------eEEEEc-CCC--C--EEEccEEEEec
Confidence 2222 332323345566777776776 99999999999998752 222322 112 2 79999999999
Q ss_pred cCCCCH
Q 003990 510 GALSTP 515 (781)
Q Consensus 510 Gai~Tp 515 (781)
|+...|
T Consensus 164 GG~S~P 169 (408)
T COG2081 164 GGKSWP 169 (408)
T ss_pred CCcCCC
Confidence 987666
No 29
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.28 E-value=5.3e-11 Score=138.61 Aligned_cols=38 Identities=39% Similarity=0.438 Sum_probs=35.5
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.+.++||||||+|++|+.+|.++++.|.+|+||||+..
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 55789999999999999999999999999999999874
No 30
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=3.2e-11 Score=141.90 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=45.4
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
.++..+.+.+ ++|++++.|++|+.++++ +|+||.+.+.. .++...|.||.||||+|++..
T Consensus 154 ~L~~~~~~~g-i~i~~~~~v~~Li~~~~g---~v~Gv~~~~~~--~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 154 TLYQQSLKHN-AEFFIEYFALDLIMDDGG---VCRGVVAWNLD--DGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHhhcC-CEEEEeEEEEEEEEcCCC---EEEEEEEEECC--CCcEEEEEcCEEEECCCCCcc
Confidence 3334444555 999999999999986522 89999986422 345678999999999999874
No 31
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.28 E-value=3e-11 Score=142.46 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=46.2
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
.++...+.+.+ ++|++++.|++|+.++++ +|.||.+.+.. +++...|+||.||||+|++..
T Consensus 191 ~~L~~~a~~~g-v~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~--~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 191 HTLYGQAMKHN-TQFFVEYFALDLIMDSDG---ACQGVIALNME--DGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHHHHhCC-CEEEEeeEEEEEEEcCCC---EEEEEEEEEcC--CCeEEEEEcCeEEECCCCCcc
Confidence 34444455555 999999999999876321 89999987522 346778999999999999864
No 32
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.28 E-value=1.8e-11 Score=142.54 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=43.8
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~ 513 (781)
.+...+.++.|++|++++.|++|+.+++ ..+|+||.+.. .+....|+||.||||+|++.
T Consensus 139 ~L~~~~~~~~gi~i~~~~~v~~Li~~~~--~g~v~Gv~~~~----~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 139 TLTEQVLQRPNIEIISQALALSLWLEPE--TGRCQGISLLY----QGQITWLRAGAVILATGGGG 197 (553)
T ss_pred HHHHHHhhcCCcEEEECcChhhheecCC--CCEEEEEEEEE----CCeEEEEEcCEEEEcCCCCc
Confidence 3444444555699999999999988641 12899998864 23456789999999999975
No 33
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.23 E-value=2.3e-10 Score=134.79 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=44.3
Q ss_pred chHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCC
Q 003990 450 WLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513 (781)
Q Consensus 450 ~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~ 513 (781)
++..+.++++++|++++.|++|+.+++ +|+||.+.+.. +++...|+||.||||+|++.
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~~g----~v~Gv~~~~~~--~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVDDN----RIAGAVGFSVR--ENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEeCC----EEEEEEEEEcc--CCcEEEEECCEEEECCCchh
Confidence 334445566799999999999987665 89999875422 23456889999999999875
No 34
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=2.4e-10 Score=134.30 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=41.0
Q ss_pred CCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 458 GNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 458 gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
++++|++++.|++|+.++++ +|+||.+.+.. +++...|+||.||||+|++..
T Consensus 150 ~~i~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~--~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDDEG---VCRGIVAQDLF--TMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECCCC---EEEEEEEEECC--CCcEEEEECCEEEECCCCCcC
Confidence 34899999999999975322 89999997632 235567899999999999864
No 35
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.22 E-value=8.3e-11 Score=137.95 Aligned_cols=59 Identities=7% Similarity=0.089 Sum_probs=45.3
Q ss_pred chHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 450 WLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 450 ~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
++..+.+.+|+++++++.|++|+.+++ +|.||.+.+.. ++....|+||.||+|+|++..
T Consensus 139 L~~~~~~~~~i~i~~~~~v~~Li~~~g----~v~Gv~~~~~~--~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 139 LFQTSLKYPQIQRFDEHFVLDILVDDG----HVRGLVAMNMM--EGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred HHHHhhcCCCcEEEeCeEEEEEEEeCC----EEEEEEEEEcC--CCcEEEEECCEEEECCCCCcC
Confidence 344444556799999999999998765 89999886432 234678999999999999763
No 36
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=7.6e-11 Score=137.58 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=43.8
Q ss_pred hHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 451 LVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 451 L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
|...+.+.+++|++++.|++|+.+++ ++|+||.+.+.. .+....|+||.||+|+|++..
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~~---~~v~Gv~~~~~~--~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDEN---REVIGAIFLDLR--NGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeCC---cEEEEEEEEECC--CCcEEEEEcCcEEECCCCCCC
Confidence 33333334599999999999998754 269999886522 235668999999999999863
No 37
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=7.8e-11 Score=139.22 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=40.7
Q ss_pred CeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 459 NSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 459 n~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
|++|++++.|++|+.+++ +|.||.+.+.. +++...|+||.||||+|++..
T Consensus 165 ~v~i~~~~~v~~L~~~~g----~v~Gv~~~~~~--~g~~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 165 RIKVFAECTITELLKDGG----RIAGAFGYWRE--SGRFVLFEAPAVVLATGGIGK 214 (626)
T ss_pred ceEEEeCCEEEEEEEECC----EEEEEEEEECC--CCeEEEEEcCeEEECCCcccC
Confidence 499999999999998655 89999876522 335668999999999999763
No 38
>PRK12839 hypothetical protein; Provisional
Probab=99.22 E-value=1.7e-10 Score=134.94 Aligned_cols=38 Identities=50% Similarity=0.564 Sum_probs=35.2
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.+.++||||||+|.+|+++|+.|++.|.+|+||||+..
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~ 42 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAST 42 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 45689999999999999999999999999999999863
No 39
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.22 E-value=1.1e-10 Score=135.95 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=45.3
Q ss_pred chHHHhhCCCeEEecCcEEEEEEccCC--CCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCC
Q 003990 450 WLVDLVNSGNSAILPGCEAIEVLHKKR--RDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513 (781)
Q Consensus 450 ~L~~a~~~gn~~i~~~~~V~~I~~~~g--g~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~ 513 (781)
++..+.+++|++|++++.|++|+.++. .+..+|+||.+.+.. +++...|+||.||||+|++.
T Consensus 144 L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~--~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 144 LVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRN--KERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECC--CCcEEEEecCeEEECCCCCC
Confidence 333445566799999999999987531 001289999987532 33567899999999999985
No 40
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=1.6e-10 Score=135.91 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=44.9
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
.++..+.+.+ ++|+.++.|++|+.++++ +|.||.+.+.. +++...|+||.||||+|++..
T Consensus 153 ~L~~~~~~~g-i~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~--~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 153 TLYQQNVAAK-TQFFVEWMALDLIRDADG---DVLGVTALEME--TGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHHhcC-CEEEeCcEEEEEEEcCCC---eEEEEEEEEcC--CCeEEEEECCeEEECCCCccc
Confidence 3444455555 999999999999976422 89999986522 335668899999999999863
No 41
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.21 E-value=1.8e-10 Score=134.96 Aligned_cols=60 Identities=8% Similarity=0.029 Sum_probs=46.0
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
++...+.+.++++++.++.|++|+.+++ +|+||.+.+.. +++...|+||.||||+|++..
T Consensus 137 ~L~~~~~~~~~i~i~~~~~v~~Li~~~g----~v~Gv~~~~~~--~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 137 TLFQTSLTYPQIMRYDEWFVTDLLVDDG----RVCGLVAIEMA--EGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred HHHHHHHhcCCCEEEeCeEEEEEEeeCC----EEEEEEEEEcC--CCcEEEEecCEEEEcCCCCcc
Confidence 3344444556699999999999998765 89999886532 335678999999999999763
No 42
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.21 E-value=2e-10 Score=134.26 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=47.4
Q ss_pred hHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEecc-EEEEeccCCCCHHHHHHc
Q 003990 451 LVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESK-VTIVACGALSTPNLLKRS 521 (781)
Q Consensus 451 L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak-~VVLAaGai~Tp~LLl~S 521 (781)
|.+.+++.+++|+++++|++|+.+++ +|+||++.. .++...|+|+ .||||+|++.+..-|+..
T Consensus 214 L~~~~~~~gv~v~~~t~v~~l~~~~g----~v~Gv~~~~----~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 214 LRIGLQRAGVPVLLNTPLTDLYVEDG----RVTGVHAAE----SGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHHHcCCCEEEeCCEEEEEEEeCC----EEEEEEEEe----CCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 33444444599999999999998754 899999864 2356789995 699999999976555443
No 43
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.21 E-value=8.1e-11 Score=136.17 Aligned_cols=58 Identities=17% Similarity=0.289 Sum_probs=44.1
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCC
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~ 513 (781)
.+++..+.++++++|+.++.|++|+.+++ +|+||.+.+ . +....|+||.||||+|++.
T Consensus 140 ~~L~~~~~~~~gV~i~~~~~v~~Li~~~g----~v~Gv~~~~--~--~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 140 RALIAAVRATPSITVLEGAEARRLLVDDG----AVAGVLAAT--A--GGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHhCCCCEEEECcChhheeecCC----EEEEEEEEe--C--CeEEEEECCEEEEcCCCCc
Confidence 34444444554599999999999987654 899998874 1 2345789999999999985
No 44
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.20 E-value=2.3e-10 Score=134.41 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=44.2
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
.++..+.+. |++|++++.|++|+.+++ +|.||.+.+.. .++...|+||.||||+|++..
T Consensus 140 ~L~~~~~~~-gi~i~~~t~v~~L~~~~g----~v~Gv~~~~~~--~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 140 ELVNNLRRY-GVTIYDEWYVMRLILEDN----QAKGVVMYHIA--DGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred HHHHHHhhC-CCEEEeCcEEEEEEEECC----EEEEEEEEEcC--CCeEEEEECCEEEECCCCCcC
Confidence 344444444 599999999999988765 89999875422 234567899999999999853
No 45
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.20 E-value=2.4e-10 Score=134.33 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=47.7
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEec-cEEEEeccCCCCHHHHH
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVES-KVTIVACGALSTPNLLK 519 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~A-k~VVLAaGai~Tp~LLl 519 (781)
.+...+.+.| ++|+++++|++|+.+++ +|+||.+.. + +....|+| |.||||+|++....-++
T Consensus 222 ~L~~~a~~~G-v~i~~~t~v~~l~~~~g----~v~GV~~~~--~--~~~~~i~a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 222 RLLKSAEDLG-VRIWESAPARELLREDG----RVAGAVVET--P--GGLQEIRARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHHHHhCC-CEEEcCCEEEEEEEeCC----EEEEEEEEE--C--CcEEEEEeCCEEEEcCCCcccCHHHH
Confidence 4445556666 99999999999988754 899998875 1 23467899 99999999997655543
No 46
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.19 E-value=1.4e-10 Score=137.53 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=44.7
Q ss_pred hHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 451 LVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 451 L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
...+.+.| ++|+.++.|++|+.+++ +|.||.+.+.. +++...|.||.||||+|++..
T Consensus 165 ~~~~~~~g-v~i~~~~~~~~Li~~~g----~v~Gv~~~~~~--~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 165 DNEAIKLG-VPVHDRKEAIALIHDGK----RCYGAVVRCLI--TGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred HHHHHhCC-CEEEeeEEEEEEEEECC----EEEEEEEEEcC--CCcEEEEEcCeEEECCCcccC
Confidence 33344555 99999999999998765 89999997532 335678899999999999863
No 47
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.19 E-value=2.3e-10 Score=134.34 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=45.7
Q ss_pred chHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEec-cEEEEeccCCCCHHHHHH
Q 003990 450 WLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVES-KVTIVACGALSTPNLLKR 520 (781)
Q Consensus 450 ~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~A-k~VVLAaGai~Tp~LLl~ 520 (781)
+...+.+.| ++|++++.|++|+.+++ +|+||.+.+ .. ....|+| |.||||+|++....-++.
T Consensus 220 L~~~~~~~G-v~i~~~~~v~~l~~~~g----~V~GV~~~~---~~-~~~~i~a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 220 LAKSALDLG-IPILTGTPARELLTEGG----RVVGARVID---AG-GERRITARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HHHHHHhCC-CEEEeCCEEEEEEeeCC----EEEEEEEEc---CC-ceEEEEeCCEEEEcCCCccchHHHHH
Confidence 333344555 99999999999998765 899999875 11 2456788 589999999975554443
No 48
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=1.8e-10 Score=135.33 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=43.4
Q ss_pred chHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCC
Q 003990 450 WLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513 (781)
Q Consensus 450 ~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~ 513 (781)
+...+.+.+ ++|++++.|++|+.+++++..+|+||.+.+.. +++...|+||.||||+|++.
T Consensus 146 L~~~~~~~g-v~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~--~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 146 LYQNCVKHG-VEFFNEFYVLDLLLTETPSGPVAAGVVAYELA--TGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHhcC-CEEEeCCEEEEEEecCCccCCcEEEEEEEEcC--CCeEEEEEeCeEEECCCCCc
Confidence 333344454 99999999999987651000289999886422 23556789999999999986
No 49
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.18 E-value=4.1e-10 Score=132.35 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=44.9
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~ 513 (781)
.++..+.+.| ++|++++.|++|+.+++ +|+||.+.+.. .++...|+||.||+|+|++.
T Consensus 134 ~L~~~~~~~g-v~i~~~~~v~~L~~~~g----~v~Gv~~~~~~--~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 134 TLYEQCLKLG-VSFFNEYFALDLIHDDG----RVRGVVAYDLK--TGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHcC-CEEEeccEEEEEEEeCC----EEEEEEEEECC--CCcEEEEECCeEEECCCccc
Confidence 3444455565 99999999999998765 89999886522 23456899999999999975
No 50
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.17 E-value=5.3e-10 Score=137.56 Aligned_cols=49 Identities=22% Similarity=0.185 Sum_probs=40.7
Q ss_pred CeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCC
Q 003990 459 NSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513 (781)
Q Consensus 459 n~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~ 513 (781)
++++.+++.+++|+.+++ +|+||.+.+.. +++...|+||.||||+|+++
T Consensus 157 ~i~~~~~~~~~~Li~~~g----~v~Gv~~~~~~--~g~~~~i~AkaVILATGG~g 205 (897)
T PRK13800 157 RIRIENRLMPVRVLTEGG----RAVGAAALNTR--TGEFVTVGAKAVILATGPCG 205 (897)
T ss_pred CcEEEeceeeEEEEeeCC----EEEEEEEEecC--CCcEEEEECCEEEECCCccc
Confidence 599999999999987755 89999987532 34677899999999999985
No 51
>PRK08275 putative oxidoreductase; Provisional
Probab=99.17 E-value=5.5e-10 Score=130.67 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=43.1
Q ss_pred chHHHhhCCCeEEecCcEEEEEEcc-CCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCC
Q 003990 450 WLVDLVNSGNSAILPGCEAIEVLHK-KRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513 (781)
Q Consensus 450 ~L~~a~~~gn~~i~~~~~V~~I~~~-~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~ 513 (781)
+...+.+.+ ++|++++.|++|+.+ ++ ++.||.+.+.. .++...|+||.||||+|++.
T Consensus 143 L~~~~~~~g-v~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~--~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 143 LYRQLKRAR-VLITNRIMATRLLTDADG----RVAGALGFDCR--TGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHCC-CEEEcceEEEEEEEcCCC----eEEEEEEEecC--CCcEEEEECCEEEECCCCcc
Confidence 333344444 999999999999986 43 89999876532 23456789999999999975
No 52
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.17 E-value=1.8e-10 Score=133.29 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=42.7
Q ss_pred HHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 453 DLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 453 ~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
..++.+ ++|++++.|++|+.+++ +|.||.+.+ .+++...++||.||||+|++..
T Consensus 138 ~~~~~g-V~i~~~~~v~~Li~~~g----~v~Gv~~~~---~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 138 QELVPH-VTVVEQEMVIDLIIENG----RCIGVLTKD---SEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHhcC-CEEEECeEhhheeecCC----EEEEEEEEE---CCCcEEEEEcCeEEEecCCCcc
Confidence 333444 99999999999987655 899998875 2335568899999999999864
No 53
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.16 E-value=3.6e-11 Score=134.15 Aligned_cols=168 Identities=23% Similarity=0.288 Sum_probs=84.6
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccccCCchhhhhhhCCccccCCCceeeeecceecCcchhc
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCARSNLSLLEGKTMDQMYLAGGMLATDDMGVILLAGSTVGGGSTIN 351 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~G~~lGGgs~in 351 (781)
|||||||+|++|++||..||+.|++|+||||++... ..+.. -|++..|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~g------------kKil~--------------------tG~GrCN 48 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVG------------KKILI--------------------TGNGRCN 48 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-------------HHHHH--------------------CGGGT-E
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccc------------cceee--------------------cCCCCcc
Confidence 899999999999999999999999999999997421 11110 1233334
Q ss_pred ccccccCChhhHHHHHHHhc-CCCcChhhhhHHHHhhhhhccccCCCccCCccHHHHHHHHHHcCCCCCCCCCCCCCCCc
Q 003990 352 WSASIKTPKHVANEWCDEYE-LKLFESDLYKEAMEVVCERMGVQSEVEEEGFNNAVLRRGCKELGYPVNNIPRNSPPDHY 430 (781)
Q Consensus 352 ~~~~~r~~~~~~~~W~~~~g-l~~~~~~~~~~~~~~v~~~l~v~~~~~~~~~~~~~l~~~~~~lG~~~~~~p~n~~~~~~ 430 (781)
.... ......| ...++ .+.| +...+ ..+.++.+++.++++|++...-+ +
T Consensus 49 ~tn~-~~~~~~~---~~~~~~~~~f----~~~~l---------------~~f~~~d~~~ff~~~Gv~~~~~~-~------ 98 (409)
T PF03486_consen 49 LTNL-NIDPSEF---LSGYGRNPKF----LKSAL---------------KRFSPEDLIAFFEELGVPTKIEE-D------ 98 (409)
T ss_dssp EEET-TSSGGGE---ECS-TBTTTC----THHHH---------------HHS-HHHHHHHHHHTT--EEE-S-T------
T ss_pred cccc-ccchhhH---hhhcccchHH----HHHHH---------------hcCCHHHHHHHHHhcCCeEEEcC-C------
Confidence 3321 1111111 00000 0111 11111 12345678888999999865321 1
Q ss_pred ceeccccCCCCcccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEecc
Q 003990 431 CGWCCLGCKDGSKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACG 510 (781)
Q Consensus 431 ~g~~~~gc~~g~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaG 510 (781)
|... +......+....++..+.+.| ++|+++++|+.|..+++ .+..|.+. ....+.||.||||+|
T Consensus 99 -gr~f--P~s~~a~~Vv~~L~~~l~~~g-v~i~~~~~V~~i~~~~~----~~f~v~~~-------~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 99 -GRVF--PKSDKASSVVDALLEELKRLG-VEIHFNTRVKSIEKKED----GVFGVKTK-------NGGEYEADAVILATG 163 (409)
T ss_dssp -TEEE--ETT--HHHHHHHHHHHHHHHT--EEE-S--EEEEEEETT----EEEEEEET-------TTEEEEESEEEE---
T ss_pred -CEEC--CCCCcHHHHHHHHHHHHHHcC-CEEEeCCEeeeeeecCC----ceeEeecc-------CcccccCCEEEEecC
Confidence 1111 112222334445555666677 99999999999998765 66777662 124899999999999
Q ss_pred CCCCHH
Q 003990 511 ALSTPN 516 (781)
Q Consensus 511 ai~Tp~ 516 (781)
+...|.
T Consensus 164 G~S~p~ 169 (409)
T PF03486_consen 164 GKSYPK 169 (409)
T ss_dssp -SSSGG
T ss_pred CCCccc
Confidence 876665
No 54
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.16 E-value=3.9e-10 Score=127.23 Aligned_cols=34 Identities=35% Similarity=0.588 Sum_probs=32.4
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
+||||||||+.|+++|++|+++|++|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999873
No 55
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.16 E-value=3.1e-10 Score=130.84 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=43.5
Q ss_pred chHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 450 WLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 450 ~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
+...+.++.|++|++++.|++|+.+++ +++||.+.+. +....|+||.||+|+|++..
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~~g----~v~Gv~~~~~----~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIETG----RVVGVWVWNR----ETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeeccCC----EEEEEEEEEC----CcEEEEEcCEEEECCCcccC
Confidence 333344445699999999999988654 8999988752 23457899999999999864
No 56
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=7.2e-10 Score=130.29 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=44.9
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~ 513 (781)
.++..+.+..+++|+.++.|++|+.+++ +|+||.+.+.. +++...|+||.||||+|++.
T Consensus 142 ~L~~~~~~~~gv~i~~~~~v~~Li~~~g----~v~Gv~~~~~~--~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 142 TLYSRALRFDNIHFYDEHFVTSLIVENG----VFKGVTAIDLK--RGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHhcCCCEEEECCEEEEEEEECC----EEEEEEEEEcC--CCeEEEEECCcEEEcCchhc
Confidence 3444444545599999999999988765 89999886532 23456789999999999985
No 57
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.15 E-value=2.8e-10 Score=128.66 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=46.3
Q ss_pred hhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCC
Q 003990 447 SETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLK 524 (781)
Q Consensus 447 ~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~ 524 (781)
...++..+.+.| ++|+++++|++|..+++ ++.+|... ..+++|+.||+|+|+ ++..|+...|+.
T Consensus 204 ~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~----~~~~v~t~--------~~~~~a~~VV~a~G~-~~~~l~~~~g~~ 267 (416)
T PRK00711 204 TQRLAAMAEQLG-VKFRFNTPVDGLLVEGG----RITGVQTG--------GGVITADAYVVALGS-YSTALLKPLGVD 267 (416)
T ss_pred HHHHHHHHHHCC-CEEEcCCEEEEEEecCC----EEEEEEeC--------CcEEeCCEEEECCCc-chHHHHHHhCCC
Confidence 344555556666 99999999999987654 66666533 126889999999997 577777665554
No 58
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.14 E-value=5.5e-10 Score=131.86 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=54.0
Q ss_pred hhhhchHHHhhCCCeEEecCcEEEEEEccC-CCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcC
Q 003990 446 TSETWLVDLVNSGNSAILPGCEAIEVLHKK-RRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSG 522 (781)
Q Consensus 446 ~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~-gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SG 522 (781)
....++..+.++| ++|+.+++|++|..++ ++ +++||.+.+.. +++...|+||.||+|||+ ++..|+...|
T Consensus 234 l~~al~~~A~~~G-a~i~~~~~V~~l~~~~~~g---~v~gV~v~d~~--tg~~~~i~a~~VVnAaGa-ws~~l~~~~g 304 (627)
T PLN02464 234 LNVALACTAALAG-AAVLNYAEVVSLIKDESTG---RIVGARVRDNL--TGKEFDVYAKVVVNAAGP-FCDEVRKMAD 304 (627)
T ss_pred HHHHHHHHHHhCC-cEEEeccEEEEEEEecCCC---cEEEEEEEECC--CCcEEEEEeCEEEECCCH-hHHHHHHhcc
Confidence 4445667777787 9999999999998763 21 78899887532 224557999999999997 5889988876
No 59
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.14 E-value=8.7e-10 Score=129.47 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=47.4
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEec-cEEEEeccCCCCH-HHHHH
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVES-KVTIVACGALSTP-NLLKR 520 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~A-k~VVLAaGai~Tp-~LLl~ 520 (781)
.++..+.+.| ++|++++.|++|+.+++ +|+||.+.. .++...|.| |.||||+|++... .++..
T Consensus 226 aL~~~~~~~G-v~i~~~t~v~~Li~~~g----~V~GV~~~~----~g~~~~i~A~~~VVlAtGg~~~n~em~~~ 290 (578)
T PRK12843 226 RLLYSLRARG-VRILTQTDVESLETDHG----RVIGATVVQ----GGVRRRIRARGGVVLATGGFNRHPQLRRE 290 (578)
T ss_pred HHHHHHHhCC-CEEEeCCEEEEEEeeCC----EEEEEEEec----CCeEEEEEccceEEECCCCcccCHHHHHH
Confidence 3444455566 99999999999987655 899998864 235667887 7899999999964 44443
No 60
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.13 E-value=5.9e-10 Score=123.39 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=51.5
Q ss_pred hhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC
Q 003990 446 TSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN 525 (781)
Q Consensus 446 ~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~ 525 (781)
...+++..+.++| ++|..|++|++|..+++ . +.+..+.++ +.. ++||.||+|||. .+..|++++|++.
T Consensus 155 ~t~~l~e~a~~~g-~~i~ln~eV~~i~~~~d----g---~~~~~~~~g--~~~-~~ak~Vin~AGl-~Ad~la~~~g~~~ 222 (429)
T COG0579 155 LTRALAEEAQANG-VELRLNTEVTGIEKQSD----G---VFVLNTSNG--EET-LEAKFVINAAGL-YADPLAQMAGIPE 222 (429)
T ss_pred HHHHHHHHHHHcC-CEEEecCeeeEEEEeCC----c---eEEEEecCC--cEE-EEeeEEEECCch-hHHHHHHHhCCCc
Confidence 4556777777886 99999999999998765 1 222222222 333 999999999995 7999999999976
No 61
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.13 E-value=2.1e-10 Score=112.88 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=45.8
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeC----CceeEEEEeccEEEEeccC
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYM----GAKDICVVESKVTIVACGA 511 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~----g~g~~~~i~Ak~VVLAaGa 511 (781)
.+++..+.+.| ++|+..+.|++|++.++ .++.||.+.++.- ---...+|+||.||=|+|-
T Consensus 113 skl~~~a~~aG-aki~n~~~veDvi~r~~---~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 113 SKLAARALDAG-AKIFNGVSVEDVIVRDD---PRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHhcC-ceeeecceEEEEEEecC---CceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 34566778899 99999999999888764 2899999987420 0112458999999999994
No 62
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.13 E-value=3.3e-10 Score=127.73 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=47.2
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCCC
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKNA 526 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~p 526 (781)
..++..+.+.| ++++.+++|++|..++++ ++.+|.+.+ + .++|+.||+|||++ ++.++...|+..|
T Consensus 187 ~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~---~~~~v~t~~---g-----~i~a~~vVvaagg~-~~~l~~~~g~~~~ 252 (407)
T TIGR01373 187 WGYARGADRRG-VDIIQNCEVTGFIRRDGG---RVIGVETTR---G-----FIGAKKVGVAVAGH-SSVVAAMAGFRLP 252 (407)
T ss_pred HHHHHHHHHCC-CEEEeCCEEEEEEEcCCC---cEEEEEeCC---c-----eEECCEEEECCChh-hHHHHHHcCCCCC
Confidence 34555666777 999999999999764321 566665432 2 68999999999985 6677776676543
No 63
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.12 E-value=4.1e-10 Score=118.45 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=45.1
Q ss_pred hhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEee---CC-ceeEEEEeccEEEEeccCC
Q 003990 446 TSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQY---MG-AKDICVVESKVTIVACGAL 512 (781)
Q Consensus 446 ~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~---~g-~g~~~~i~Ak~VVLAaGai 512 (781)
....++..+.+.| ++|+++++|++|+.++++ ++.||.+.+.. .+ .....+|+||.||+|+|..
T Consensus 106 l~~~L~~~A~~~G-v~I~~~t~V~dl~~~~~g---~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 106 AAAKLAAAAIDAG-AKIFNGVSVEDVILREDP---RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHcC-CEEEcCceeceeeEeCCC---cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 3445556666776 999999999999875532 78999886421 00 1134689999999999974
No 64
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.11 E-value=2.5e-10 Score=113.27 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=41.7
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEee----CCceeEEEEeccEEEEeccC
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQY----MGAKDICVVESKVTIVACGA 511 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~----~g~g~~~~i~Ak~VVLAaGa 511 (781)
.+++..+.+.| ++|+..+.|++++..++ .|+.||.+.++. +-.-...+|+||.||=|+|-
T Consensus 100 s~L~s~a~~aG-akifn~~~vEDvi~r~~---~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 100 STLASKAIDAG-AKIFNLTSVEDVIVRED---DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp HHHHHHHHTTT-EEEEETEEEEEEEEECS---CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred HHHHHHHhcCC-CEEEeeeeeeeeEEEcC---CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 34556677766 99999999999887662 299999998841 00123578999999999993
No 65
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.10 E-value=2.3e-10 Score=118.20 Aligned_cols=71 Identities=17% Similarity=0.069 Sum_probs=51.5
Q ss_pred hhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEee-----CC------ceeEEEEeccEEEEeccCCCCH
Q 003990 447 SETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQY-----MG------AKDICVVESKVTIVACGALSTP 515 (781)
Q Consensus 447 ~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~-----~g------~g~~~~i~Ak~VVLAaGai~Tp 515 (781)
....++++.+++.++|.+.++|.+|...++ +++||...-.. .+ ....+.+.|..||+++|+|+-.
T Consensus 155 Fvr~~re~~~~~~v~f~~RHrV~~l~~t~g----rvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIGGn 230 (552)
T COG3573 155 FVRRLREAQRRGRVTFRFRHRVDGLTTTGG----RVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIGGN 230 (552)
T ss_pred HHHHHHHHHhCCceEEEeeeeccceEeeCC----eEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCcCCC
Confidence 344556677789999999999999999876 99998754311 00 1124578899999999999866
Q ss_pred HHHHHc
Q 003990 516 NLLKRS 521 (781)
Q Consensus 516 ~LLl~S 521 (781)
.-|-+-
T Consensus 231 helVRr 236 (552)
T COG3573 231 HELVRR 236 (552)
T ss_pred HHHHHh
Confidence 555543
No 66
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.10 E-value=1.1e-09 Score=128.86 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=41.9
Q ss_pred CCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 457 SGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 457 ~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
.+|++|++++.|++|+.++++ +|+||.+.+.. +++...|+||.||||+|++..
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~g---rV~GV~~~~~~--~g~~~~i~AkaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGN---RARGIIARNLV--TGEIETHSADAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCC---EEEEEEEEECC--CCcEEEEEcCEEEECCCCCcC
Confidence 356999999999999986432 89999987521 234567899999999999853
No 67
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.10 E-value=2.5e-09 Score=125.33 Aligned_cols=52 Identities=23% Similarity=0.205 Sum_probs=40.4
Q ss_pred CeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCC
Q 003990 459 NSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513 (781)
Q Consensus 459 n~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~ 513 (781)
+++|++++.|++|+.++++ ..+|+||.+.+.. +++...|+||.||||+|++.
T Consensus 140 ~~~i~~~~~v~~Ll~d~~~-~GrV~Gv~~~~~~--~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 140 LGDIFERIFIVKLLLDKNT-PNRIAGAVGFNVR--ANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred CCeEEcccEEEEEEecCCC-CCeEEEEEEEEeC--CCcEEEEECCEEEECCCccc
Confidence 3899999999999986410 0289999986532 33567899999999999974
No 68
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.09 E-value=1.2e-09 Score=123.29 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=58.7
Q ss_pred hhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC
Q 003990 447 SETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN 525 (781)
Q Consensus 447 ~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~ 525 (781)
....+.+|.++| +++++.++|++++.++ .+.||++.+.. +++.+.|+|+.||.|||. |+-.++...+..+
T Consensus 167 v~~~a~~A~~~G-a~il~~~~v~~~~re~-----~v~gV~~~D~~--tg~~~~ira~~VVNAaGp-W~d~i~~~~~~~~ 236 (532)
T COG0578 167 VAANARDAAEHG-AEILTYTRVESLRREG-----GVWGVEVEDRE--TGETYEIRARAVVNAAGP-WVDEILEMAGLEQ 236 (532)
T ss_pred HHHHHHHHHhcc-cchhhcceeeeeeecC-----CEEEEEEEecC--CCcEEEEEcCEEEECCCc-cHHHHHHhhcccC
Confidence 445567788899 9999999999999876 28999999743 457899999999999997 6899999887654
No 69
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.07 E-value=8.6e-10 Score=123.01 Aligned_cols=34 Identities=44% Similarity=0.509 Sum_probs=32.2
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
|||||||||+.|+++|++|+++|++|+||||+..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 6999999999999999999999999999999763
No 70
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.05 E-value=1.9e-09 Score=123.49 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=33.4
Q ss_pred CCcccEEEECCCchHHHHHHHHHhC--CCeEEEEcCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKA--GYKVLVLEKGS 304 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~--G~kVlVLEkG~ 304 (781)
..++||||||+|+.|+++|++|+++ |.+|+|||++.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 3569999999999999999999998 99999999975
No 71
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.05 E-value=1.1e-09 Score=114.74 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=44.4
Q ss_pred hhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEee---CC-ceeEEEEeccEEEEeccC
Q 003990 447 SETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQY---MG-AKDICVVESKVTIVACGA 511 (781)
Q Consensus 447 ~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~---~g-~g~~~~i~Ak~VVLAaGa 511 (781)
...++..+.+.| ++|+.++.|++|+.+++ ..++.||.+.+.. .+ ......|+||.||.|+|.
T Consensus 103 ~~~L~~~a~e~G-V~I~~~t~V~dli~~~~--~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 103 ISTLASKALQAG-AKIFNGTSVEDLITRDD--TVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred HHHHHHHHHHcC-CEEECCcEEEEEEEeCC--CCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 344555566777 99999999999988654 2369999885421 01 113568999999999994
No 72
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.04 E-value=2.6e-09 Score=118.94 Aligned_cols=36 Identities=33% Similarity=0.472 Sum_probs=33.6
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.+|||||||+|+.|+++|+.|++.|++|+||||+..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 369999999999999999999999999999999863
No 73
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.04 E-value=3.2e-09 Score=122.87 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=48.8
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHH-cCCC
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKR-SGLK 524 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~-SGi~ 524 (781)
..++..+.++| ++|+++++|++|..+++ ..+|.+.+.. +++..+|+||.||+|+|+ ++..++.. .|+.
T Consensus 159 ~~l~~~A~~~G-a~i~~~~~V~~i~~~~~-----~~~v~~~~~~--~g~~~~i~a~~VVnAaG~-wa~~l~~~~~g~~ 227 (508)
T PRK12266 159 VLNARDAAERG-AEILTRTRVVSARRENG-----LWHVTLEDTA--TGKRYTVRARALVNAAGP-WVKQFLDDGLGLP 227 (508)
T ss_pred HHHHHHHHHcC-CEEEcCcEEEEEEEeCC-----EEEEEEEEcC--CCCEEEEEcCEEEECCCc-cHHHHHhhccCCC
Confidence 44556677787 99999999999987643 3466665421 234568999999999997 57788764 3653
No 74
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.04 E-value=4.2e-09 Score=120.73 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=49.7
Q ss_pred hhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCC
Q 003990 446 TSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLK 524 (781)
Q Consensus 446 ~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~ 524 (781)
...+++..+.++| ++|+++++|++|..++++ .+. |.+.++. .+...+|+|+.||+|||+ ++..|+..+|+.
T Consensus 180 l~~aL~~~a~~~G-v~i~~~t~V~~i~~~~~~---~v~-v~~~~~~--~g~~~~i~A~~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 180 LTKQLLGYLVQNG-TTIRFGHEVRNLKRQSDG---SWT-VTVKNTR--TGGKRTLNTRFVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHhCC-CEEEeCCEEEEEEEcCCC---eEE-EEEeecc--CCceEEEECCEEEECCCc-chHHHHHHcCCC
Confidence 4445666666777 999999999999875431 222 3333211 223457899999999997 689999999986
No 75
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.03 E-value=2e-09 Score=124.56 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=49.1
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHH-cCCC
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKR-SGLK 524 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~-SGi~ 524 (781)
..++..+.++| ++|+.+++|+.|..+++ ..+|.+.+ +.++..+|+|+.||+|+|+ ++..|+.. .|+.
T Consensus 159 ~~l~~~a~~~G-a~i~~~~~V~~i~~~~~-----~~~v~~~~---~~g~~~~i~a~~VVnAaG~-wa~~l~~~~~g~~ 226 (502)
T PRK13369 159 VLNALDAAERG-ATILTRTRCVSARREGG-----LWRVETRD---ADGETRTVRARALVNAAGP-WVTDVIHRVAGSN 226 (502)
T ss_pred HHHHHHHHHCC-CEEecCcEEEEEEEcCC-----EEEEEEEe---CCCCEEEEEecEEEECCCc-cHHHHHhhccCCC
Confidence 34456677788 99999999999987643 34566654 1245678999999999997 58888764 3653
No 76
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.02 E-value=2.6e-09 Score=122.30 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=47.6
Q ss_pred hhhchHHHhh----CC-CeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHc
Q 003990 447 SETWLVDLVN----SG-NSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRS 521 (781)
Q Consensus 447 ~~~~L~~a~~----~g-n~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~S 521 (781)
...++..+.+ .| +++|+++++|+.|..+++ ....|.+. . ..|+|+.||+|||+ ++..|+.++
T Consensus 214 ~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~----~~~~V~T~---~-----G~i~A~~VVvaAG~-~S~~La~~~ 280 (497)
T PTZ00383 214 SESFVKHARRDALVPGKKISINLNTEVLNIERSND----SLYKIHTN---R-----GEIRARFVVVSACG-YSLLFAQKM 280 (497)
T ss_pred HHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC----CeEEEEEC---C-----CEEEeCEEEECcCh-hHHHHHHHh
Confidence 3455555555 44 388999999999987644 34444432 1 26899999999997 599999999
Q ss_pred CCC
Q 003990 522 GLK 524 (781)
Q Consensus 522 Gi~ 524 (781)
|++
T Consensus 281 Gi~ 283 (497)
T PTZ00383 281 GYG 283 (497)
T ss_pred CCC
Confidence 984
No 77
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.01 E-value=1.2e-09 Score=122.64 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=44.6
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCC
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLK 524 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~ 524 (781)
..+...+.+.| ++|+.+++|++|..+++ .+ .|... + .+++|+.||+|+|+ +++.++...|+.
T Consensus 153 ~aL~~~~~~~G-v~i~~~~~V~~i~~~~~----~~-~V~~~---~-----g~i~ad~vV~A~G~-~s~~l~~~~g~~ 214 (393)
T PRK11728 153 EAMAELIQARG-GEIRLGAEVTALDEHAN----GV-VVRTT---Q-----GEYEARTLINCAGL-MSDRLAKMAGLE 214 (393)
T ss_pred HHHHHHHHhCC-CEEEcCCEEEEEEecCC----eE-EEEEC---C-----CEEEeCEEEECCCc-chHHHHHHhCCC
Confidence 34444455666 99999999999987653 32 34322 1 16899999999997 688999888875
No 78
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.00 E-value=2.3e-09 Score=123.99 Aligned_cols=192 Identities=20% Similarity=0.139 Sum_probs=106.2
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccccCCchhhhhhhCCccccCCCceeeeecceecCc
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCARSNLSLLEGKTMDQMYLAGGMLATDDMGVILLAGSTVGGG 347 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~G~~lGGg 347 (781)
...+|||||||||.+|+.||..++++|.+|+||||...... .++-..
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg---------------------------------~t~~a~ 49 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG---------------------------------HTVAAQ 49 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC---------------------------------chhhhc
Confidence 34689999999999999999999999999999999874321 111111
Q ss_pred chhcccccccCC-hhhHHHHHHH---hcCCCcChhhhhHHHHhhhhhccccCCCccCCccHHHHHHHHHHcCCCCCCCCC
Q 003990 348 STINWSASIKTP-KHVANEWCDE---YELKLFESDLYKEAMEVVCERMGVQSEVEEEGFNNAVLRRGCKELGYPVNNIPR 423 (781)
Q Consensus 348 s~in~~~~~r~~-~~~~~~W~~~---~gl~~~~~~~~~~~~~~v~~~l~v~~~~~~~~~~~~~l~~~~~~lG~~~~~~p~ 423 (781)
+.+|...-.... ..+-.+|... .+-.+....+.... .+ ......+..+++.|.++...+-
T Consensus 50 gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dqd~i~~---~~-------------~~ap~~v~~Le~~G~~f~r~~~ 113 (562)
T COG1053 50 GGINAALGNTVDVEGDSPELHFYDTVKGGDGLGDQDAVEA---FA-------------DEAPEAVDELEKWGVPFSRTED 113 (562)
T ss_pred ccccccccCcccccCCCHHHHHHHHHhccCCcCCHHHHHH---HH-------------HhhHHHHHHHHHhCCCcccCCC
Confidence 122222211110 0010011111 01111111111111 11 0112345667888988754331
Q ss_pred CCCCCCcceecc--ccCCCCcccch--hhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEE
Q 003990 424 NSPPDHYCGWCC--LGCKDGSKKGT--SETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICV 499 (781)
Q Consensus 424 n~~~~~~~g~~~--~gc~~g~k~s~--~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~ 499 (781)
........|... ..|..+.+.+. ..++...+.+..+++|+.+..|++|+.++++ .|.||...+..+ ++...
T Consensus 114 G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~---~v~Gvv~~~~~~--g~~~~ 188 (562)
T COG1053 114 GRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGG---GVAGVVARDLRT--GELYV 188 (562)
T ss_pred ccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCCC---cEEEEEEEEecC--CcEEE
Confidence 100000111111 23444444332 2344444555355799999999999987652 499999887543 46778
Q ss_pred EeccEEEEeccCCC
Q 003990 500 VESKVTIVACGALS 513 (781)
Q Consensus 500 i~Ak~VVLAaGai~ 513 (781)
++||.||+|+|+.+
T Consensus 189 ~~akavilaTGG~g 202 (562)
T COG1053 189 FRAKAVILATGGAG 202 (562)
T ss_pred EecCcEEEccCCce
Confidence 88999999999987
No 79
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.98 E-value=1.4e-08 Score=116.71 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=48.9
Q ss_pred hhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCC
Q 003990 447 SETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLK 524 (781)
Q Consensus 447 ~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~ 524 (781)
..++...+.+.|+++|+++++|+.|..++++ ++. |.+.+.. +++..+|+|+.||+|||+ ++..|+..+|+.
T Consensus 186 ~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg---~~~-v~~~~~~--~G~~~~i~A~~VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 186 TRQLVGYLQKQGNFELQLGHEVRDIKRNDDG---SWT-VTVKDLK--TGEKRTVRAKFVFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHhCCCeEEEeCCEEEEEEECCCC---CEE-EEEEEcC--CCceEEEEcCEEEECCCc-chHHHHHHcCCC
Confidence 3445555556666899999999999875431 232 3333211 223346899999999997 689999999986
No 80
>PLN02661 Putative thiazole synthesis
Probab=98.97 E-value=3.8e-09 Score=113.99 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=45.0
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEee----CCc---eeEEEEeccEEEEeccCC
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQY----MGA---KDICVVESKVTIVACGAL 512 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~----~g~---g~~~~i~Ak~VVLAaGai 512 (781)
.+++..+.++.|++|+.++.|++|+.+++ ++.||.+.+.. ... .....|+||.||+|+|.-
T Consensus 176 stLi~ka~~~~gVkI~~~t~V~DLI~~~g----rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 176 STIMSKLLARPNVKLFNAVAAEDLIVKGD----RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred HHHHHHHHhcCCCEEEeCeEeeeEEecCC----EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 34555566667799999999999998765 89999975421 111 123579999999999964
No 81
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.96 E-value=4e-09 Score=119.87 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=45.9
Q ss_pred hhhhchHHHhhCCCeEEecCcEEEEEEccC-CCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHH
Q 003990 446 TSETWLVDLVNSGNSAILPGCEAIEVLHKK-RRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLL 518 (781)
Q Consensus 446 ~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~-gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LL 518 (781)
....+...+.+.| ++|+++++|++|+.++ + .+++||.... + ...|+||.||||+|++....-+
T Consensus 125 l~~~L~~~a~~~G-v~i~~~~~v~~l~~~~~~---g~v~gv~~~~---~---~~~i~ak~VIlAtGG~~~n~~~ 188 (432)
T TIGR02485 125 LTNALYSSAERLG-VEIRYGIAVDRIPPEAFD---GAHDGPLTTV---G---THRITTQALVLAAGGLGANRDW 188 (432)
T ss_pred HHHHHHHHHHHcC-CEEEeCCEEEEEEecCCC---CeEEEEEEcC---C---cEEEEcCEEEEcCCCcccCHHH
Confidence 3445555566666 9999999999998763 2 2788987642 1 2478899999999999865433
No 82
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.96 E-value=1.5e-08 Score=116.10 Aligned_cols=33 Identities=33% Similarity=0.453 Sum_probs=31.7
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+||||||||++|+++|..|+++|.+|+||||+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999999999999974
No 83
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.95 E-value=2.5e-09 Score=111.48 Aligned_cols=38 Identities=39% Similarity=0.437 Sum_probs=35.1
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
+....||||||+|+-|+++|++||+.|.++++||+-+.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ 41 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPL 41 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCC
Confidence 45678999999999999999999999999999999874
No 84
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.94 E-value=2.3e-08 Score=114.23 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=53.8
Q ss_pred hhhchHHHhhCCCeEEecCcEEEEEEcc-CCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC
Q 003990 447 SETWLVDLVNSGNSAILPGCEAIEVLHK-KRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN 525 (781)
Q Consensus 447 ~~~~L~~a~~~gn~~i~~~~~V~~I~~~-~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~ 525 (781)
..+++..+.+.++++|+++++|+.|..+ ++ .++ |.+..+. .++..+++|+.||+|||+ ++..|+..+|+..
T Consensus 187 ~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~----~w~-v~v~~t~--~g~~~~i~Ad~VV~AAGa-wS~~La~~~Gi~~ 258 (497)
T PRK13339 187 TRKLAKHLESHPNAQVKYNHEVVDLERLSDG----GWE-VTVKDRN--TGEKREQVADYVFIGAGG-GAIPLLQKSGIPE 258 (497)
T ss_pred HHHHHHHHHhCCCcEEEeCCEEEEEEECCCC----CEE-EEEEecC--CCceEEEEcCEEEECCCc-chHHHHHHcCCCc
Confidence 3455555545545999999999999876 33 332 3322111 122336899999999997 6899999999863
Q ss_pred -------Cccccccccc
Q 003990 526 -------ANIGKNLHLH 535 (781)
Q Consensus 526 -------p~VG~nL~dH 535 (781)
|--|+.|...
T Consensus 259 ~~~~~i~PvkGq~l~l~ 275 (497)
T PRK13339 259 SKHLGGFPISGQFLRCT 275 (497)
T ss_pred cCCCceEeeeEEEEEec
Confidence 2337666654
No 85
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.90 E-value=3.3e-09 Score=116.40 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=47.1
Q ss_pred hhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCC
Q 003990 447 SETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALS 513 (781)
Q Consensus 447 ~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~ 513 (781)
..+++..+.+++|++|+.++.+.+|+.+++ ..+.||.+... + ++..+|+|+.||||+|+++
T Consensus 136 ~~~L~~~v~~~p~I~v~e~~~a~~li~~~~---~~~~Gv~~~~~--~-~~~~~~~a~~vVLATGG~g 196 (518)
T COG0029 136 MTALLKKVRNRPNITVLEGAEALDLIIEDG---IGVAGVLVLNR--N-GELGTFRAKAVVLATGGLG 196 (518)
T ss_pred HHHHHHHHhcCCCcEEEecchhhhhhhcCC---ceEeEEEEecC--C-CeEEEEecCeEEEecCCCc
Confidence 344555566779999999999999999875 14559998752 1 1567899999999999873
No 86
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.87 E-value=6.9e-09 Score=115.21 Aligned_cols=33 Identities=36% Similarity=0.458 Sum_probs=31.9
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|||||||+|++|+++|++|+++|++|+|||++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999999999999986
No 87
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.87 E-value=1.2e-08 Score=115.75 Aligned_cols=36 Identities=44% Similarity=0.672 Sum_probs=33.9
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.+|||||||+|++|+++|+.||++|++|+||||+..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 469999999999999999999999999999999874
No 88
>PF13618 Gluconate_2-dh3: Gluconate 2-dehydrogenase subunit 3
Probab=98.86 E-value=1.4e-08 Score=95.69 Aligned_cols=119 Identities=24% Similarity=0.361 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHhcccCCCCCcccccchHHHHHHHHHhccCCCCchHHHHHHHHhcCChhHHHHHHHHHHhhhcccccccc
Q 003990 28 SSQEMESLSALCDTFLPAVDVKTAASIDKDIADFFRASASAAGTPERLGGLMSERLKHPKKWLVRLCLWLLSTCIGSLVL 107 (781)
Q Consensus 28 s~~q~~~l~ai~d~~~p~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lL~tr~g~l~L 107 (781)
|+.|+++|.+|||+|||.... +++++.++++-+.+.+.....++.++.++.-|..|+...-...
T Consensus 1 t~~e~~~L~ai~~~iiP~~~~---------------pgA~~~~v~~fId~~l~~~~~~~~~~~~~~gl~~ld~~a~~~~- 64 (131)
T PF13618_consen 1 TAEEAATLAAIADTIIPADDT---------------PGASDAGVPEFIDRMLADCYMPEDRRAFRAGLAALDAYAQKRY- 64 (131)
T ss_pred CHHHHHHHHHHHHHhcCCCCC---------------CChhhcChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh-
Confidence 689999999999999999742 2567788888888888876789999999999999997765552
Q ss_pred cccccccCCCCccccCCCCCHHHHHHHHHhhhccch-------HHHHHHHHHHHHHHHHHhhcccc--ccCCcccc
Q 003990 108 CGRYCFSSKFPYMHSFTQLPQKKRDAVLVSWSLSYF-------YHLRMLYKAMKLLILLVFFTQVN--EKNENLSW 174 (781)
Q Consensus 108 tg~~~~~~~~~~~~~f~~~~~~~re~~L~~w~~s~~-------~~~r~~~~~l~~l~~~~~~~~~~--~~~~~~~w 174 (781)
| .+|.+++.++|+++|+.+..+.. ...+..|..|+.+++..||+.+- .+.....|
T Consensus 65 -g-----------~~F~~l~~~~~~~lL~~~~~~~~~~~~~~~~~~~~ff~~lr~~~~~gyyt~p~ygG~~~~~~y 128 (131)
T PF13618_consen 65 -G-----------KSFAELSPAQREALLDALEKSEAAGPDWDGIPGARFFQQLRNLTLQGYYTSPEYGGNKNVLGY 128 (131)
T ss_pred -C-----------CChhhCCHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHhcCCccccCCCCCcc
Confidence 3 38999999999999999999865 34699999999999999999764 44333444
No 89
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.83 E-value=3.1e-08 Score=110.66 Aligned_cols=36 Identities=42% Similarity=0.496 Sum_probs=33.9
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++||||||+|+.|+++|+.|+++|.+|+|+|++..
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 568999999999999999999999999999999873
No 90
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.82 E-value=1.4e-08 Score=114.07 Aligned_cols=36 Identities=56% Similarity=0.772 Sum_probs=34.3
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.+|||||||+|++|++||+.||++|++|+||||+..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~ 37 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE 37 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence 479999999999999999999999999999999875
No 91
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.80 E-value=2.5e-08 Score=114.96 Aligned_cols=35 Identities=34% Similarity=0.431 Sum_probs=32.9
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+|||||||||.+|+.||..||+.|++|+|||+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 46999999999999999999999999999999863
No 92
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.79 E-value=7.4e-09 Score=113.65 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=59.5
Q ss_pred Ccceeccc--cCCCCcccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEE
Q 003990 429 HYCGWCCL--GCKDGSKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTI 506 (781)
Q Consensus 429 ~~~g~~~~--gc~~g~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VV 506 (781)
..||.|.+ |-.+.+|... +..--|.++| +++..+.+|.+++.++++ ++.|+.+++. -+|++..|+||.||
T Consensus 209 ~L~Ga~VYyDGQ~nDaRmnl--~vAlTA~r~G-A~v~Nh~ev~~Llkd~~~---kv~Ga~~rD~--iTG~e~~I~Ak~VV 280 (680)
T KOG0042|consen 209 NLKGAMVYYDGQHNDARMNL--AVALTAARNG-ATVLNHVEVVSLLKDKDG---KVIGARARDH--ITGKEYEIRAKVVV 280 (680)
T ss_pred CceeEEEEecCCCchHHHHH--HHHHHHHhcc-hhhhhHHHHHHHhhCCCC---ceeeeEEEEe--ecCcEEEEEEEEEE
Confidence 45666543 3334444332 2233466788 999999999999988753 8999999984 35689999999999
Q ss_pred EeccCCCCHHHHHH
Q 003990 507 VACGALSTPNLLKR 520 (781)
Q Consensus 507 LAaGai~Tp~LLl~ 520 (781)
.|+|.| |-.|.+.
T Consensus 281 NATGpf-sDsIr~M 293 (680)
T KOG0042|consen 281 NATGPF-SDSIRKM 293 (680)
T ss_pred eCCCCc-cHHHHhh
Confidence 999997 5555444
No 93
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.79 E-value=5.8e-09 Score=118.24 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=0.0
Q ss_pred hHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCC
Q 003990 451 LVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLK 524 (781)
Q Consensus 451 L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~ 524 (781)
+...+...|++|++++.|..++.+++ +++||.+.+. . ...+|+||.||-|+| .-.|+.++|..
T Consensus 96 l~~~l~e~gv~v~~~t~v~~v~~~~~----~i~~V~~~~~---~-g~~~i~A~~~IDaTG---~g~l~~~aG~~ 158 (428)
T PF12831_consen 96 LDEMLAEAGVEVLLGTRVVDVIRDGG----RITGVIVETK---S-GRKEIRAKVFIDATG---DGDLAALAGAP 158 (428)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc----cccccccccc---c-ccccccccccccccc---ccccccccccc
Confidence 33333334599999999999999875 8999999862 2 267899999999999 36888899875
No 94
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.73 E-value=9.2e-08 Score=107.44 Aligned_cols=72 Identities=14% Similarity=0.181 Sum_probs=55.6
Q ss_pred cccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHc
Q 003990 442 SKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRS 521 (781)
Q Consensus 442 ~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~S 521 (781)
...+...++...|.+.| +.|+.+|.|++|....+ +..||++.. ..|++..||.|||. |.-.+-.++
T Consensus 185 DP~~lC~ala~~A~~~G-A~viE~cpV~~i~~~~~----~~~gVeT~~--------G~iet~~~VNaaGv-WAr~Vg~m~ 250 (856)
T KOG2844|consen 185 DPAGLCQALARAASALG-ALVIENCPVTGLHVETD----KFGGVETPH--------GSIETECVVNAAGV-WAREVGAMA 250 (856)
T ss_pred CHHHHHHHHHHHHHhcC-cEEEecCCcceEEeecC----CccceeccC--------cceecceEEechhH-HHHHhhhhc
Confidence 44556667777788888 99999999999988765 445887763 37999999999995 557777778
Q ss_pred CCCCCc
Q 003990 522 GLKNAN 527 (781)
Q Consensus 522 Gi~~p~ 527 (781)
|++-|.
T Consensus 251 gvkvPL 256 (856)
T KOG2844|consen 251 GVKVPL 256 (856)
T ss_pred CCcccc
Confidence 877553
No 95
>PRK10015 oxidoreductase; Provisional
Probab=98.69 E-value=4.1e-08 Score=111.31 Aligned_cols=36 Identities=50% Similarity=0.753 Sum_probs=34.0
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.+|||||||+|++|+++|+.||++|++|+||||+.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 469999999999999999999999999999999874
No 96
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.69 E-value=4.9e-08 Score=110.30 Aligned_cols=42 Identities=26% Similarity=0.495 Sum_probs=38.3
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCARSN 310 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~~~ 310 (781)
..+|||||||+|.+|+++|..||++|+|||+||+.+++....
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~ 43 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGES 43 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccc
Confidence 457999999999999999999999999999999999876543
No 97
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.68 E-value=2.6e-08 Score=119.26 Aligned_cols=34 Identities=32% Similarity=0.569 Sum_probs=32.5
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
++||||||||++|+++|+.|+++|++|+||||+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5899999999999999999999999999999985
No 98
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.67 E-value=4.4e-07 Score=103.88 Aligned_cols=61 Identities=13% Similarity=0.231 Sum_probs=43.9
Q ss_pred chHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEe-ccEEEEeccCCC
Q 003990 450 WLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVE-SKVTIVACGALS 513 (781)
Q Consensus 450 ~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~-Ak~VVLAaGai~ 513 (781)
+...+.++| ++|+++++|++|+.+.+++.++|+||.+.. .+.++.+.+. +|.||+++|++.
T Consensus 232 L~~~Le~~G-V~f~~~t~VtdL~~~~d~~~~~VtgI~~~~--~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 232 LIKYLEDHG-VDFQYGTKVTDIDFDITGGKKTATAIHLTR--NGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred HHHHHHhCC-CEEEeCCEEEEEEEcCCCCceEEEEEEEEe--CCceeEEEecCCCEEEEeCCcCc
Confidence 333445667 999999999999986222345899999974 2333455555 499999999874
No 99
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.66 E-value=9e-08 Score=110.74 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=48.1
Q ss_pred CCCcccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHH
Q 003990 439 KDGSKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLL 518 (781)
Q Consensus 439 ~~g~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LL 518 (781)
+.|.......++...+.++| ++|+++++|++|..+++ ++.||.+.+ + .++.|+.||+|+|...+-..|
T Consensus 224 ~~gG~~~l~~~L~~~~~~~G-~~i~~~~~V~~I~~~~~----~~~gv~~~~---g----~~~~ad~vV~a~~~~~~~~~L 291 (493)
T TIGR02730 224 PKGGVGQIAESLVKGLEKHG-GQIRYRARVTKIILENG----KAVGVKLAD---G----EKIYAKRIVSNATRWDTFGKL 291 (493)
T ss_pred CCChHHHHHHHHHHHHHHCC-CEEEeCCeeeEEEecCC----cEEEEEeCC---C----CEEEcCEEEECCChHHHHHHh
Confidence 34433444455555556677 99999999999988765 788887653 2 267899999999986554333
No 100
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.64 E-value=9.6e-07 Score=97.16 Aligned_cols=84 Identities=18% Similarity=0.178 Sum_probs=60.0
Q ss_pred hhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCCC
Q 003990 447 SETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKNA 526 (781)
Q Consensus 447 ~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~p 526 (781)
.+.++..+.++.|+++.++++|++|...+++ + --|.+.+. .+++...|+||-|+|.||+ ++=.||++|||+-
T Consensus 184 Tr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg---~-W~v~~~~~--~~~~~~~v~a~FVfvGAGG-~aL~LLqksgi~e- 255 (488)
T PF06039_consen 184 TRQLVEYLQKQKGFELHLNHEVTDIKRNGDG---R-WEVKVKDL--KTGEKREVRAKFVFVGAGG-GALPLLQKSGIPE- 255 (488)
T ss_pred HHHHHHHHHhCCCcEEEecCEeCeeEECCCC---C-EEEEEEec--CCCCeEEEECCEEEECCch-HhHHHHHHcCChh-
Confidence 3455666666767999999999999987652 1 22444442 2346779999999999998 6899999999954
Q ss_pred ccccccccccccee
Q 003990 527 NIGKNLHLHPVTMA 540 (781)
Q Consensus 527 ~VG~nL~dHp~~~~ 540 (781)
|+++..=|+...
T Consensus 256 --~~gyggfPVsG~ 267 (488)
T PF06039_consen 256 --GKGYGGFPVSGQ 267 (488)
T ss_pred --hcccCCCcccce
Confidence 555555555433
No 101
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.64 E-value=5.8e-08 Score=106.51 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=39.1
Q ss_pred hhchHHH-hhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCC
Q 003990 448 ETWLVDL-VNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGAL 512 (781)
Q Consensus 448 ~~~L~~a-~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai 512 (781)
..++... .+++|++|+ +.+|++|+.+++ ++.||.+.+ + ..+.||.||+|+|++
T Consensus 98 ~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~----~v~GV~~~~---g----~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 98 SRAMREKLESHPNLTII-QGEVTDLIVENG----KVKGVVTKD---G----EEIEADAVVLATGTF 151 (392)
T ss_dssp HHHHHHHHHTSTTEEEE-ES-EEEEEECTT----EEEEEEETT---S----EEEEECEEEE-TTTG
T ss_pred HHHHHHHHhcCCCeEEE-EcccceEEecCC----eEEEEEeCC---C----CEEecCEEEEecccc
Confidence 3444444 456899997 578999998876 999998753 2 379999999999995
No 102
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.62 E-value=1.6e-07 Score=108.21 Aligned_cols=38 Identities=45% Similarity=0.570 Sum_probs=34.7
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCA 307 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~ 307 (781)
..+||||||||.+|+++|..||++|++|+||||.....
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G 39 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG 39 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence 35899999999999999999999999999999987543
No 103
>PRK06185 hypothetical protein; Provisional
Probab=98.60 E-value=1.8e-07 Score=105.57 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=45.8
Q ss_pred HHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC
Q 003990 453 DLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN 525 (781)
Q Consensus 453 ~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~ 525 (781)
.+.+.++++++.+++|+++..+++ ++++|.+... + ...+++|+.||.|.|+. |. +-...|+..
T Consensus 117 ~~~~~~~v~i~~~~~v~~~~~~~~----~v~~v~~~~~-~---g~~~i~a~~vI~AdG~~-S~-vr~~~gi~~ 179 (407)
T PRK06185 117 EASAYPNFTLRMGAEVTGLIEEGG----RVTGVRARTP-D---GPGEIRADLVVGADGRH-SR-VRALAGLEV 179 (407)
T ss_pred HHhhCCCcEEEeCCEEEEEEEeCC----EEEEEEEEcC-C---CcEEEEeCEEEECCCCc-hH-HHHHcCCCc
Confidence 344555699999999999988765 7788877641 1 23578999999999974 54 556667754
No 104
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.56 E-value=1.3e-07 Score=97.83 Aligned_cols=54 Identities=19% Similarity=0.342 Sum_probs=44.6
Q ss_pred eEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC--HHHHHH
Q 003990 460 SAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST--PNLLKR 520 (781)
Q Consensus 460 ~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T--p~LLl~ 520 (781)
++|+.+++|++|+.+++ +|.||++.+. ++++..+.++.||+|+|+|.- -.||..
T Consensus 160 ~ki~~nskvv~il~n~g----kVsgVeymd~---sgek~~~~~~~VVlatGGf~ysd~~lLKe 215 (477)
T KOG2404|consen 160 VKILLNSKVVDILRNNG----KVSGVEYMDA---SGEKSKIIGDAVVLATGGFGYSDKELLKE 215 (477)
T ss_pred HhhhhcceeeeeecCCC----eEEEEEEEcC---CCCccceecCceEEecCCcCcChHHHHHH
Confidence 89999999999997766 9999999973 456778889999999999985 344443
No 105
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.54 E-value=5.9e-07 Score=103.95 Aligned_cols=36 Identities=39% Similarity=0.584 Sum_probs=33.3
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
+.||||||||.+|+++|..|+++|++|+||||....
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 358999999999999999999999999999998754
No 106
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.52 E-value=2.7e-07 Score=97.79 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=43.6
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGAL 512 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai 512 (781)
.+-..|...+|+++..++ |..|+.+++ .+.||.+.+. .+++.+..|.-.|+|-|-+
T Consensus 152 ~lR~ka~slpNV~~eeGt-V~sLlee~g----vvkGV~yk~k---~gee~~~~ApLTvVCDGcf 207 (509)
T KOG1298|consen 152 RLRKKAASLPNVRLEEGT-VKSLLEEEG----VVKGVTYKNK---EGEEVEAFAPLTVVCDGCF 207 (509)
T ss_pred HHHHHHhcCCCeEEeeee-HHHHHhccC----eEEeEEEecC---CCceEEEecceEEEecchh
Confidence 333456678999987775 888888876 8999999863 3356788899999999987
No 107
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.48 E-value=1.6e-06 Score=98.01 Aligned_cols=38 Identities=24% Similarity=0.415 Sum_probs=35.0
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
...+|||+|||||++|+++|..|+++|++|+||||.+.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 44579999999999999999999999999999999874
No 108
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.47 E-value=5e-07 Score=104.86 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=47.4
Q ss_pred CCcccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHH
Q 003990 440 DGSKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLK 519 (781)
Q Consensus 440 ~g~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl 519 (781)
.+.......++...+.+.| ++|++++.|++|..+++ ++++|++.+ + ..+.|+.||+|++...+-..|+
T Consensus 215 ~gG~~~l~~al~~~~~~~G-~~i~~~~~V~~i~~~~~----~~~~V~~~~---g----~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 215 RGGTGALVAAMAKLAEDLG-GELRLNAEVIRIETEGG----RATAVHLAD---G----ERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred CCCHHHHHHHHHHHHHHCC-CEEEECCeEEEEEeeCC----EEEEEEECC---C----CEEECCEEEECCcHHHHHHHhc
Confidence 3333334445555555677 99999999999998765 788887652 2 2578999999999755555554
No 109
>PLN02985 squalene monooxygenase
Probab=98.41 E-value=3e-06 Score=98.10 Aligned_cols=37 Identities=38% Similarity=0.539 Sum_probs=34.1
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
....+||||||+|++|+++|..|+++|++|+||||..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3467899999999999999999999999999999964
No 110
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.40 E-value=5.1e-07 Score=101.35 Aligned_cols=36 Identities=39% Similarity=0.459 Sum_probs=34.0
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
...+||||||+|++|+++|+.|+++|++|+||||.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 467999999999999999999999999999999986
No 111
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.39 E-value=2.9e-06 Score=95.29 Aligned_cols=34 Identities=38% Similarity=0.525 Sum_probs=32.6
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+|||||||+|.+|+++|..|+++|++|+|||++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999984
No 112
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.37 E-value=2.2e-06 Score=96.42 Aligned_cols=31 Identities=35% Similarity=0.598 Sum_probs=29.3
Q ss_pred EEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 275 VVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 275 IVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
||||+|++|+++|..|++.|++|+||||.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcc
Confidence 6999999999999999999999999999863
No 113
>PRK07208 hypothetical protein; Provisional
Probab=98.37 E-value=8.4e-06 Score=94.07 Aligned_cols=40 Identities=35% Similarity=0.421 Sum_probs=35.5
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCAR 308 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~ 308 (781)
+...||||||||.+|+++|++|+++|++|+|+|+.+....
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3567999999999999999999999999999999776433
No 114
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.35 E-value=2.5e-06 Score=98.51 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=31.6
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|||||||+|.+|+.+|..+|+.|.+|+|||+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 799999999999999999999999999999964
No 115
>PRK06126 hypothetical protein; Provisional
Probab=98.34 E-value=3.1e-06 Score=99.32 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=33.7
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+.++||+|||+|++|+++|..|++.|++|+|+||.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 457999999999999999999999999999999875
No 116
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.34 E-value=5e-06 Score=93.04 Aligned_cols=37 Identities=38% Similarity=0.494 Sum_probs=34.3
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
...+||||||+|++|+++|..|++.|++|+||||+..
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3568999999999999999999999999999999874
No 117
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.34 E-value=2.8e-06 Score=92.02 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=52.8
Q ss_pred cccCCCCcccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 435 CLGCKDGSKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 435 ~~gc~~g~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
..+.+.|.-.....+....+.++| ++|.+++.|.+|+.+++ +|+||.+.+ | .++++|.||--|+-+.|
T Consensus 255 ~~~Yp~GG~Gavs~aia~~~~~~G-aeI~tka~Vq~Illd~g----ka~GV~L~d---G----~ev~sk~VvSNAt~~~T 322 (561)
T KOG4254|consen 255 GWGYPRGGMGAVSFAIAEGAKRAG-AEIFTKATVQSILLDSG----KAVGVRLAD---G----TEVRSKIVVSNATPWDT 322 (561)
T ss_pred cccCCCCChhHHHHHHHHHHHhcc-ceeeehhhhhheeccCC----eEEEEEecC---C----cEEEeeeeecCCchHHH
Confidence 334455555445556666667778 99999999999999886 999999985 3 36788999998988776
Q ss_pred H
Q 003990 515 P 515 (781)
Q Consensus 515 p 515 (781)
=
T Consensus 323 f 323 (561)
T KOG4254|consen 323 F 323 (561)
T ss_pred H
Confidence 5
No 118
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.33 E-value=1.1e-06 Score=88.84 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=35.3
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSG 522 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SG 522 (781)
.|+....++-+++++++++|+++..+++ + --|.+.+ + .+++|+.||+|+|.+..|..+.--|
T Consensus 86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~~----~-w~v~~~~-----~--~~~~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 86 DYLQEYAERFGLEIRFNTRVESVRRDGD----G-WTVTTRD-----G--RTIRADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHTTGGEETS--EEEEEEETT----T-EEEEETT-----S---EEEEEEEEE---SSCSB---S-TT
T ss_pred HHHHHHHhhcCcccccCCEEEEEEEecc----E-EEEEEEe-----c--ceeeeeeEEEeeeccCCCCcccccc
Confidence 4555555444488999999999998865 3 1233321 1 4788999999999988888765433
No 119
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.33 E-value=1e-05 Score=92.84 Aligned_cols=33 Identities=42% Similarity=0.576 Sum_probs=31.6
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
+|||||||||++|+.+|.+|++.|++|+|||++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 489999999999999999999999999999994
No 120
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.31 E-value=4.6e-06 Score=97.06 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=57.1
Q ss_pred hhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC
Q 003990 446 TSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN 525 (781)
Q Consensus 446 ~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~ 525 (781)
...+++..|.+.| ++|+++++|++|..+++ ++.||.+.++. +++...|+|+.||+|||+ ++..|+...|+..
T Consensus 130 l~~al~~~A~~~G-a~i~~~t~V~~i~~~~~----~v~gv~v~~~~--~g~~~~i~a~~VVnAaG~-wa~~l~~~~g~~~ 201 (516)
T TIGR03377 130 LVAANVLDAQEHG-ARIFTYTKVTGLIREGG----RVTGVKVEDHK--TGEEERIEAQVVINAAGI-WAGRIAEYAGLDI 201 (516)
T ss_pred HHHHHHHHHHHcC-CEEEcCcEEEEEEEECC----EEEEEEEEEcC--CCcEEEEEcCEEEECCCc-chHHHHHhcCCCC
Confidence 3445667777888 99999999999998765 88999887532 234568999999999996 6899998888743
No 121
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.31 E-value=2.6e-05 Score=86.89 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=49.5
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcC
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSG 522 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SG 522 (781)
.++...+.+.| ++|+.+++|+++..+++ ++++|.+.. ++...++||.||||+|+|.|..|+...+
T Consensus 267 ~aL~~~~~~~G-g~il~g~~V~~i~~~~~----~v~~V~t~~-----g~~~~l~AD~vVLAaGaw~S~gL~a~l~ 331 (419)
T TIGR03378 267 EALKHRFEQLG-GVMLPGDRVLRAEFEGN----RVTRIHTRN-----HRDIPLRADHFVLASGSFFSNGLVAEFD 331 (419)
T ss_pred HHHHHHHHHCC-CEEEECcEEEEEEeeCC----eEEEEEecC-----CccceEECCEEEEccCCCcCHHHHhhcC
Confidence 34444455677 99999999999998765 788876542 1235799999999999987998877653
No 122
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.29 E-value=5.1e-07 Score=99.03 Aligned_cols=35 Identities=34% Similarity=0.519 Sum_probs=31.3
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
+|||||||+|++|+++|..|+++|++|+|+||.+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 58999999999999999999999999999999764
No 123
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.28 E-value=7.1e-06 Score=93.70 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=34.4
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.....+|+|||||++|+++|.+|.+.|++|+|+||++.
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 33468999999999999999999999999999999873
No 124
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.27 E-value=1.2e-05 Score=94.20 Aligned_cols=36 Identities=39% Similarity=0.573 Sum_probs=34.0
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
..++||||||+|++|+++|..|++.|++|+||||..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 467999999999999999999999999999999986
No 125
>PLN02697 lycopene epsilon cyclase
Probab=98.26 E-value=3.3e-06 Score=97.53 Aligned_cols=36 Identities=31% Similarity=0.312 Sum_probs=33.0
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
...|||||||+|++|+++|..|++.|++|+|||++.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~ 141 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 141 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence 346999999999999999999999999999999853
No 126
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.26 E-value=2.3e-06 Score=91.59 Aligned_cols=76 Identities=30% Similarity=0.374 Sum_probs=55.9
Q ss_pred chhhhchHH-HhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEee---CCc-----eeEEEEeccEEEEeccCCC--
Q 003990 445 GTSETWLVD-LVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQY---MGA-----KDICVVESKVTIVACGALS-- 513 (781)
Q Consensus 445 s~~~~~L~~-a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~---~g~-----g~~~~i~Ak~VVLAaGai~-- 513 (781)
+.+..||.. |.+.| ++|..++.+.+|+++++| .|.||.+.+.. .|. .+...++||..|.|-|.-+
T Consensus 183 ~~~v~wLg~kAEe~G-vEiyPg~aaSevly~edg---sVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELG-VEIYPGFAASEVLYDEDG---SVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred HHHHHHHHHHHHhhC-ceeccccchhheeEcCCC---cEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 456678865 55667 999999999999998754 79999887631 111 1345799999999988765
Q ss_pred CHHHHHHcCCC
Q 003990 514 TPNLLKRSGLK 524 (781)
Q Consensus 514 Tp~LLl~SGi~ 524 (781)
|-+++.+-++.
T Consensus 259 skqi~kkf~Lr 269 (621)
T KOG2415|consen 259 SKQIIKKFDLR 269 (621)
T ss_pred HHHHHHHhCcc
Confidence 66888887653
No 127
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.24 E-value=6.5e-06 Score=84.05 Aligned_cols=32 Identities=41% Similarity=0.539 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+++|||+|++|+++|+.|+++|++|+|+|||.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 68999999999999999999999999999997
No 128
>PRK08244 hypothetical protein; Provisional
Probab=98.24 E-value=3.6e-06 Score=97.46 Aligned_cols=35 Identities=34% Similarity=0.511 Sum_probs=33.0
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
+|||+|||+|++|+++|..|++.|++|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 48999999999999999999999999999999763
No 129
>PLN02463 lycopene beta cyclase
Probab=98.24 E-value=4.3e-06 Score=95.00 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=33.4
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
...|||||||+|++|+++|..|+++|++|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 356999999999999999999999999999999965
No 130
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.23 E-value=1.4e-05 Score=87.47 Aligned_cols=210 Identities=15% Similarity=0.059 Sum_probs=105.1
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhC-----CCeEEEEcCCCCCCCCCcccccCCchhhhhhhCCccccCCCceeeeecc
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKA-----GYKVLVLEKGSYCARSNLSLLEGKTMDQMYLAGGMLATDDMGVILLAGS 342 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~-----G~kVlVLEkG~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~G~ 342 (781)
+...||+||||+|.+|+.+|++|+.. .++|++||+|......-.+....+. . ....-..+.+..|
T Consensus 15 ~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~~~~~~--------~-~c~~~~~~~I~~G- 84 (486)
T COG2509 15 MNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPKDEKKL--------E-KCPKCDPCPIVIG- 84 (486)
T ss_pred hhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhccccccch--------h-hcCCCCCceeEec-
Confidence 55679999999999999999999963 6899999999865443333222110 0 0000112334433
Q ss_pred eecCcchhcccccc-cCChhhHHHHHHHhcCCCcChhhhhHHHHhhhhhccccCCCccCCccHHHHH-HHHHHcCCCCCC
Q 003990 343 TVGGGSTINWSASI-KTPKHVANEWCDEYELKLFESDLYKEAMEVVCERMGVQSEVEEEGFNNAVLR-RGCKELGYPVNN 420 (781)
Q Consensus 343 ~lGGgs~in~~~~~-r~~~~~~~~W~~~~gl~~~~~~~~~~~~~~v~~~l~v~~~~~~~~~~~~~l~-~~~~~lG~~~~~ 420 (781)
+||...+..+... ++. +-.|-.+.--+.+..-+...+.+.+.-.+|-........ ....+. ....+.|.+...
T Consensus 85 -~GgaG~fs~g~lnl~P~---~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~~g~~~~~~-~~e~ikd~e~~aa~a~~ei 159 (486)
T COG2509 85 -FGGAGLFSDGILNLRPI---RGGDVHERTKDTDEFWELVNLVDESNVQFGAPGAGTFSD-LTEQIKDIEFRAAGAGEEI 159 (486)
T ss_pred -ccccccccccceecccc---cccchhhhhCChHHHHHHHhccchhheecCCCcCcccCC-chhhhhHHHHHHhCCCcee
Confidence 5666655544432 222 111111100000000000011111111122111111111 112222 233455665554
Q ss_pred CCCCCCCCCcceeccccCCCCcccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEE
Q 003990 421 IPRNSPPDHYCGWCCLGCKDGSKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVV 500 (781)
Q Consensus 421 ~p~n~~~~~~~g~~~~gc~~g~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i 500 (781)
++.... +.|... -.-...+........| ++|+.+++|++|++.++ .+.+|.... ..+|
T Consensus 160 l~~~~r--------HiGTD~--l~~vvkni~~~l~~~G-~ei~f~t~VeDi~~~~~----~~~~v~~~~-------g~~i 217 (486)
T COG2509 160 LPIYQR--------HIGTDI--LPKVVKNIREYLESLG-GEIRFNTEVEDIEIEDN----EVLGVKLTK-------GEEI 217 (486)
T ss_pred eecccc--------ccCccc--hHHHHHHHHHHHHhcC-cEEEeeeEEEEEEecCC----ceEEEEccC-------CcEE
Confidence 432110 111111 1112333334445677 99999999999999875 577777653 2489
Q ss_pred eccEEEEeccCCCC
Q 003990 501 ESKVTIVACGALST 514 (781)
Q Consensus 501 ~Ak~VVLAaGai~T 514 (781)
.++.||+|-|=-+.
T Consensus 218 ~~~~vvlA~Grsg~ 231 (486)
T COG2509 218 EADYVVLAPGRSGR 231 (486)
T ss_pred ecCEEEEccCcchH
Confidence 99999999995443
No 131
>PRK06184 hypothetical protein; Provisional
Probab=98.21 E-value=1e-05 Score=93.93 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=32.6
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
++||+|||+|++|+++|..|++.|++|+||||.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5899999999999999999999999999999976
No 132
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.21 E-value=8.9e-06 Score=95.56 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=45.3
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
.+...+.+.+ ++|+.++.+++|+.+++| +|+||.+.+.. +++...|+||.||||+|++..
T Consensus 131 ~L~~~~~~~g-i~i~~~~~~~~Li~~~~g---~v~Gv~~~~~~--~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 131 TLYQGNLKNG-TTFLNEWYAVDLVKNQDG---AVVGVIAICIE--TGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHHHhccC-CEEEECcEEEEEEEcCCC---eEEEEEEEEcC--CCcEEEEecCeEEECCCCccc
Confidence 3333344455 999999999999986322 99999986532 346678999999999999864
No 133
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.21 E-value=2.2e-06 Score=95.70 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
||||||+|++|+++|..|+++|++|+|+||.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 899999999999999999999999999999874
No 134
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.20 E-value=8.5e-06 Score=91.50 Aligned_cols=35 Identities=37% Similarity=0.495 Sum_probs=32.8
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
...||+|||+|++|+++|..|++.|++|+|+||.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 35799999999999999999999999999999976
No 135
>PRK06847 hypothetical protein; Provisional
Probab=98.20 E-value=2.4e-05 Score=87.21 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=32.3
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
..||+|||+|++|+++|..|++.|++|+|+|+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 5799999999999999999999999999999975
No 136
>PRK11445 putative oxidoreductase; Provisional
Probab=98.20 E-value=2.2e-05 Score=86.79 Aligned_cols=32 Identities=31% Similarity=0.584 Sum_probs=30.9
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|||+|||+|++|+++|..|+++ ++|+|||+.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 8999999999999999999999 9999999976
No 137
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.19 E-value=1.2e-05 Score=83.59 Aligned_cols=216 Identities=23% Similarity=0.208 Sum_probs=115.4
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhC--CCeEEEEcCCCCCCCCCcccccCCchhhhhhhCCccccCCCceeeeecceec
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKA--GYKVLVLEKGSYCARSNLSLLEGKTMDQMYLAGGMLATDDMGVILLAGSTVG 345 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~--G~kVlVLEkG~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~G~~lG 345 (781)
....||.||||+|+.|++.|.+|.-+ +++|+||||........ .|.
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hq-----------------------------Sgh--- 92 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQ-----------------------------SGH--- 92 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceee-----------------------------ccc---
Confidence 45789999999999999999999976 99999999986432110 000
Q ss_pred CcchhcccccccCCh-----------hhHHHHHHHhcCCCcChhhhhHHHHhhhhhccccCCCccCCccHHHHHHHHHHc
Q 003990 346 GGSTINWSASIKTPK-----------HVANEWCDEYELKLFESDLYKEAMEVVCERMGVQSEVEEEGFNNAVLRRGCKEL 414 (781)
Q Consensus 346 Ggs~in~~~~~r~~~-----------~~~~~W~~~~gl~~~~~~~~~~~~~~v~~~l~v~~~~~~~~~~~~~l~~~~~~l 414 (781)
-+..|+.++|..+.. -.| ++..++.+|+ +-++.+-|.....+-... +.+.......
T Consensus 93 NSgViHaGIYY~P~SLKAklCV~G~~LlY-~yc~e~~Ipy-----------Kk~GKLIVAt~~~EiprL-d~L~~~g~qN 159 (453)
T KOG2665|consen 93 NSGVIHAGIYYKPGSLKAKLCVEGRELLY-EYCDEKKIPY-----------KKTGKLIVATESEEIPRL-DALMHRGTQN 159 (453)
T ss_pred ccceeeeeeeeCCcccchhhhhccHHHHH-HHhhhcCCCh-----------hhcceEEEEeChhhcchH-HHHHHhhhhc
Confidence 133455555554432 111 1222223321 123444444443333222 2232222333
Q ss_pred CCCCCCC-CCCC--CCCCcc-eeccccCCC-Cc--ccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEE
Q 003990 415 GYPVNNI-PRNS--PPDHYC-GWCCLGCKD-GS--KKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAF 487 (781)
Q Consensus 415 G~~~~~~-p~n~--~~~~~~-g~~~~gc~~-g~--k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~ 487 (781)
|++--.+ .... .-..+| |.-..-|+. |. ..+....+..+....| .++.+|.++.++..++.+. --.-+.+
T Consensus 160 ~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~edF~~~g-g~i~~n~~l~g~~~n~~~~--~~Ypivv 236 (453)
T KOG2665|consen 160 GVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGEDFDFMG-GRIYTNFRLQGIAQNKEAT--FSYPIVV 236 (453)
T ss_pred CCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHHHHHhc-ccccccceeccchhccCCC--CCCceEE
Confidence 3332111 1000 001111 222233432 21 1223345566666777 9999999999998765311 1111223
Q ss_pred EEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC-C----ccccccccccc
Q 003990 488 EFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN-A----NIGKNLHLHPV 537 (781)
Q Consensus 488 ~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~-p----~VG~nL~dHp~ 537 (781)
.. + +..+++.+.||-|+| +.+.++-..||... | --|.+|...|.
T Consensus 237 ~n---g--k~ee~r~~~~vtc~g-l~sdr~aa~sgc~~dPriVpfrG~ylll~~e 285 (453)
T KOG2665|consen 237 LN---G--KGEEKRTKNVVTCAG-LQSDRCAALSGCELDPRIVPFRGEYLLLKPE 285 (453)
T ss_pred ec---C--ccceeEEeEEEEecc-ccHhHHHHHhCCCCCCeeeeccchhhhcChH
Confidence 32 2 334677777777777 89999999999864 3 34776665543
No 138
>PRK06834 hypothetical protein; Provisional
Probab=98.19 E-value=1.8e-05 Score=91.35 Aligned_cols=34 Identities=35% Similarity=0.585 Sum_probs=32.6
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
++||||||+|++|+++|..|++.|++|+||||.+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 5899999999999999999999999999999976
No 139
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.17 E-value=2.1e-05 Score=82.51 Aligned_cols=40 Identities=30% Similarity=0.554 Sum_probs=35.1
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhC----CCeEEEEcCCCCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKA----GYKVLVLEKGSYCA 307 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~----G~kVlVLEkG~~~~ 307 (781)
....+||+|||+|..|+++|+-|.+. |++|+|+|+.+.+.
T Consensus 83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 66789999999999999999999763 79999999987543
No 140
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.13 E-value=5.6e-05 Score=86.60 Aligned_cols=35 Identities=31% Similarity=0.361 Sum_probs=32.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCA 307 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~ 307 (781)
+|+|||+|.+|+++|++|+++|++|+|+|+.+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~G 35 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLG 35 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 48999999999999999999999999999987543
No 141
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.12 E-value=1.4e-05 Score=89.68 Aligned_cols=34 Identities=32% Similarity=0.595 Sum_probs=32.6
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+||+|||+|++|+++|..|++.|++|+|+||.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 5899999999999999999999999999999986
No 142
>PRK07233 hypothetical protein; Provisional
Probab=98.10 E-value=1.7e-05 Score=89.91 Aligned_cols=36 Identities=33% Similarity=0.348 Sum_probs=33.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCAR 308 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~ 308 (781)
+|||||||++|+++|+.|+++|++|+|||+.+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 589999999999999999999999999999986544
No 143
>PRK07190 hypothetical protein; Provisional
Probab=98.09 E-value=2.2e-05 Score=90.60 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=33.2
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
..+||||||+|++|+++|..|+++|.+|+||||.+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 45899999999999999999999999999999986
No 144
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.07 E-value=5e-05 Score=89.19 Aligned_cols=35 Identities=34% Similarity=0.456 Sum_probs=33.5
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.++||+|||+|++|+++|..|++.|.+|+||||.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 67999999999999999999999999999999976
No 145
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.04 E-value=3.6e-05 Score=88.60 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=42.9
Q ss_pred HHHhhCCCeEEecCcEEEEEEccCCCCcc-eEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHH
Q 003990 452 VDLVNSGNSAILPGCEAIEVLHKKRRDRN-VATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLK 519 (781)
Q Consensus 452 ~~a~~~gn~~i~~~~~V~~I~~~~gg~~~-ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl 519 (781)
....++| ++|+++++|++|..++++++. ++++|.+.+ +.+ ...+.||.||+|+......+||-
T Consensus 227 ~~L~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~---g~~-~~~~~aD~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 227 EYIEARG-GKFHLRHKVREIKYEKSSDGSTRVTGLIMSK---PEG-KKVIKADAYVAACDVPGIKRLLP 290 (474)
T ss_pred HHHHHCC-CEEECCCEEEEEEEecCCCCceeEEEEEEec---CCc-ceEEECCEEEECCChHHHHhhCC
Confidence 3334566 999999999999986421112 478887753 211 13588999999999876666653
No 146
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.04 E-value=4.4e-05 Score=86.83 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=34.4
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCe-EEEEcCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYK-VLVLEKGS 304 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~k-VlVLEkG~ 304 (781)
....+||+|||+|.+|+++|++|.++|.. ++|+||..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 45679999999999999999999999988 99999986
No 147
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=8.8e-06 Score=90.69 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=31.7
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+|||||||+|-+|+-||...|+.|.+++||--.-
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 45999999999999999999999999999997643
No 148
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.03 E-value=1.7e-05 Score=93.11 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=45.6
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCC
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALST 514 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~T 514 (781)
.+...+.+.+ ++|++++.|++|+.+++ +|+||.+.+.. +++...|+||.||||+|++..
T Consensus 124 ~L~~~~~~~g-i~i~~~~~~~~Li~~~g----~v~Ga~~~~~~--~g~~~~i~AkaVILATGG~~~ 182 (565)
T TIGR01816 124 TLYQQNLKAD-TSFFNEYFALDLLMEDG----ECRGVIAYCLE--TGEIHRFRAKAVVLATGGYGR 182 (565)
T ss_pred HHHHHHHhCC-CEEEeccEEEEEEeeCC----EEEEEEEEEcC--CCcEEEEEeCeEEECCCCccc
Confidence 3333344555 99999999999998755 99999986532 346678999999999999864
No 149
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.03 E-value=2.7e-05 Score=87.35 Aligned_cols=33 Identities=39% Similarity=0.595 Sum_probs=31.9
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
.+||+|||+|++|+++|..|+++|++|+||||.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 479999999999999999999999999999997
No 150
>PLN02612 phytoene desaturase
Probab=97.99 E-value=6.7e-05 Score=88.17 Aligned_cols=37 Identities=32% Similarity=0.354 Sum_probs=33.7
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
...+|+|||+|.+|+++|++|+++|++|+|+|+..+.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~ 128 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL 128 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 3579999999999999999999999999999997653
No 151
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.97 E-value=8.4e-06 Score=67.35 Aligned_cols=30 Identities=47% Similarity=0.657 Sum_probs=27.9
Q ss_pred EECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 276 VVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 276 VVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
|||||++|+++|+.|+++|++|+|+||.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999999875
No 152
>PRK07588 hypothetical protein; Provisional
Probab=97.96 E-value=7.1e-05 Score=83.98 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=31.0
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
||+|||||++|+++|..|++.|++|+|+||.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 89999999999999999999999999999975
No 153
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.93 E-value=1.6e-05 Score=81.75 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=46.2
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCC
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGL 523 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi 523 (781)
...+..|.+++|++++.+. |..|..+.+ |+.+|.... ..+....+.+.++|||+|. ||++||..-+|
T Consensus 151 ~~i~sea~k~~~V~lv~Gk-v~ev~dEk~----r~n~v~~ae---~~~ti~~~d~~~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 151 HFILSEAEKRGGVKLVFGK-VKEVSDEKH----RINSVPKAE---AEDTIIKADVHKIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHHHHhhcCeEEEEee-eEEeecccc----cccccchhh---hcCceEEeeeeEEEEecCC-Cchhhcccccc
Confidence 3456778899999999885 666653333 777765542 1112344556899999997 69999988665
No 154
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.91 E-value=0.00011 Score=77.10 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=41.1
Q ss_pred hhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCH
Q 003990 455 VNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTP 515 (781)
Q Consensus 455 ~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp 515 (781)
.+.| ..++.+-+|.+..+.++ +|+.|.++. ...+.++|+.+|||+|+|-|-
T Consensus 269 ~~~G-g~~m~Gd~V~~a~~~~~----~v~~i~trn-----~~diP~~a~~~VLAsGsffsk 319 (421)
T COG3075 269 EQLG-GLWMPGDEVKKATCKGG----RVTEIYTRN-----HADIPLRADFYVLASGSFFSK 319 (421)
T ss_pred HHcC-ceEecCCceeeeeeeCC----eEEEEEecc-----cccCCCChhHeeeeccccccc
Confidence 3445 89999999999998876 888887763 356789999999999998543
No 155
>PRK06116 glutathione reductase; Validated
Probab=97.90 E-value=1e-05 Score=92.58 Aligned_cols=35 Identities=37% Similarity=0.451 Sum_probs=33.0
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+|||||||+|++|+.+|.+|++.|++|+|+|++.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~ 37 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR 37 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 46999999999999999999999999999999964
No 156
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.90 E-value=9.7e-06 Score=92.70 Aligned_cols=34 Identities=38% Similarity=0.500 Sum_probs=32.5
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+|||||||+|++|..+|.+|++.|++|+|+||+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 5999999999999999999999999999999964
No 157
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.89 E-value=3.7e-05 Score=85.80 Aligned_cols=33 Identities=33% Similarity=0.600 Sum_probs=30.7
Q ss_pred cEEEECCCchHHHHHHHH--HhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVL--AKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~L--A~~G~kVlVLEkG~~ 305 (781)
||||||+|++|+++|++| ++.|++|+|||+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 899999999999999999 778999999999763
No 158
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.89 E-value=0.00019 Score=82.68 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=47.2
Q ss_pred HHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCC-------ceeEEEEeccEEEEeccCCCC-HHHHHHcCC
Q 003990 452 VDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMG-------AKDICVVESKVTIVACGALST-PNLLKRSGL 523 (781)
Q Consensus 452 ~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g-------~g~~~~i~Ak~VVLAaGai~T-p~LLl~SGi 523 (781)
..+.+.| ++|++++.+++|..+++ ++++|++.....+ .+...++.++.||+|.|.... ..|+...|+
T Consensus 337 ~~~~~~G-V~i~~~~~~~~i~~~~g----~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 337 SNAHEEG-VEREFNVQTKEFEGENG----KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HHHHHcC-CeEEeccCceEEEccCC----EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCc
Confidence 3345666 99999999999975444 8999887632211 134568999999999995433 346666665
Q ss_pred C
Q 003990 524 K 524 (781)
Q Consensus 524 ~ 524 (781)
.
T Consensus 412 ~ 412 (471)
T PRK12810 412 E 412 (471)
T ss_pred c
Confidence 4
No 159
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.89 E-value=9.9e-05 Score=85.98 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=45.5
Q ss_pred hCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHc
Q 003990 456 NSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRS 521 (781)
Q Consensus 456 ~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~S 521 (781)
+..|++|+.++.|++|..+++ ++++|.+.+.. +++..++.++.|++|.|..-.+.++..+
T Consensus 398 ~~~gI~i~~~~~v~~i~~~~g----~v~~v~~~~~~--~g~~~~i~~D~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGDGD----KVTGLTYKDRT--TGEEHHLELEGVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred cCCCcEEEECcEEEEEEcCCC----cEEEEEEEECC--CCcEEEEEcCEEEEeECCccCchHHhhh
Confidence 344699999999999986544 78888887532 2345689999999999987767776654
No 160
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.88 E-value=0.00016 Score=82.60 Aligned_cols=36 Identities=36% Similarity=0.380 Sum_probs=33.3
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
..+||+|||+|++|+.+|..|++.|++|+|+|+.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~ 167 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK 167 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 458999999999999999999999999999999753
No 161
>PRK12831 putative oxidoreductase; Provisional
Probab=97.87 E-value=0.00039 Score=79.83 Aligned_cols=36 Identities=39% Similarity=0.467 Sum_probs=33.3
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
...||+|||||++|+.+|++|++.|++|+|+|+.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~ 174 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE 174 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 567999999999999999999999999999998653
No 162
>PRK06370 mercuric reductase; Validated
Probab=97.87 E-value=1.4e-05 Score=91.94 Aligned_cols=37 Identities=35% Similarity=0.562 Sum_probs=34.0
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+..+|||||||+|++|..+|.+|++.|++|+|+|++.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 3456999999999999999999999999999999964
No 163
>PTZ00058 glutathione reductase; Provisional
Probab=97.86 E-value=1.4e-05 Score=93.29 Aligned_cols=35 Identities=37% Similarity=0.483 Sum_probs=33.2
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+|||||||+|++|..+|.+|++.|++|+||||+.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~ 81 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY 81 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 67999999999999999999999999999999964
No 164
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.86 E-value=1.3e-05 Score=92.19 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=33.6
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
...|||||||||++|+.+|.+|++.|++|+|+|++.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 37 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK 37 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 357999999999999999999999999999999964
No 165
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=3.5e-05 Score=84.04 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=32.0
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
+..|||||||+|-+||-+|...|+-|.+.++|-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 56799999999999999999999999999998764
No 166
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.85 E-value=1.4e-05 Score=91.44 Aligned_cols=34 Identities=38% Similarity=0.517 Sum_probs=32.4
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+|||||||+|++|..+|.+|++.|++|+|+|++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 35 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR 35 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc
Confidence 6999999999999999999999999999999953
No 167
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.84 E-value=1.7e-05 Score=90.43 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=34.2
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
...+|||||||+|++|+++|..||++|++|+||||..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4467999999999999999999999999999999964
No 168
>PRK07538 hypothetical protein; Provisional
Probab=97.84 E-value=0.00018 Score=81.45 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=31.0
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
||+|||+|++|+++|..|+++|++|+|+||.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 89999999999999999999999999999975
No 169
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.83 E-value=0.00016 Score=84.12 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=43.1
Q ss_pred CCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHc
Q 003990 458 GNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRS 521 (781)
Q Consensus 458 gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~S 521 (781)
.|++|++++.|+++..+++ ++.+|.+.+.. .++...+.++.||+|.|..-+..+|...
T Consensus 401 ~gV~i~~~~~v~~i~~~~~----~v~~v~~~~~~--~~~~~~i~~D~vi~a~G~~Pn~~~l~~~ 458 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGD----KVTGIRYQDRN--SGEEKQLDLDGVFVQIGLVPNTEWLKDA 458 (515)
T ss_pred CCCEEEECCeeEEEEcCCC----EEEEEEEEECC--CCcEEEEEcCEEEEEeCCcCCchHHhhh
Confidence 3499999999999976544 78888876521 2244578999999999987666666543
No 170
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.82 E-value=0.00035 Score=77.12 Aligned_cols=40 Identities=35% Similarity=0.451 Sum_probs=36.0
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCAR 308 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~ 308 (781)
...+||||||+|.+|+++|++|.++|++|+|||.-+.+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 3578999999999999999999999999999999876543
No 171
>PLN02546 glutathione reductase
Probab=97.82 E-value=2e-05 Score=91.91 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=32.4
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEK 302 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEk 302 (781)
..+|||||||+|++|..+|.+||+.|+||+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4679999999999999999999999999999996
No 172
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.81 E-value=9.4e-05 Score=92.41 Aligned_cols=63 Identities=21% Similarity=0.153 Sum_probs=47.2
Q ss_pred HHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCC
Q 003990 453 DLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLK 524 (781)
Q Consensus 453 ~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~ 524 (781)
...++| ++|++++.|+++.-++ ++.+|++... . +...+|.++.||++.|..-+..|+...|..
T Consensus 360 ~L~~~G-V~i~~~~~v~~i~g~~-----~v~~V~l~~~-~--g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 360 EARELG-IEVLTGHVVAATEGGK-----RVSGVAVARN-G--GAGQRLEADALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHHHcC-CEEEcCCeEEEEecCC-----cEEEEEEEec-C--CceEEEECCEEEEcCCcCchhHHHHhcCCC
Confidence 334555 9999999999987542 6778877631 1 234578999999999988888888887754
No 173
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.80 E-value=1.6e-05 Score=89.16 Aligned_cols=32 Identities=38% Similarity=0.687 Sum_probs=31.3
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
|||||||+|++|+++|+.||++|++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999997
No 174
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.77 E-value=2.1e-05 Score=84.02 Aligned_cols=34 Identities=50% Similarity=0.709 Sum_probs=32.5
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
|||+|||+|++|+++|..|++.|.+|+||||...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 7999999999999999999999999999999874
No 175
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.77 E-value=2.5e-05 Score=89.89 Aligned_cols=35 Identities=34% Similarity=0.409 Sum_probs=33.1
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+|||||||+|++|..+|.+|++.|++|+|+|+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 56999999999999999999999999999999864
No 176
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.77 E-value=2.3e-05 Score=88.70 Aligned_cols=35 Identities=40% Similarity=0.560 Sum_probs=33.5
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+||+||||+|++|-++|.++|+.|+||+++|++.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 57999999999999999999999999999999985
No 177
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.76 E-value=0.0002 Score=78.25 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=44.3
Q ss_pred hhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHH
Q 003990 446 TSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLL 518 (781)
Q Consensus 446 ~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LL 518 (781)
....++..+.+.| ++|+.+++|+.|..+++ ++++|.+.. .+++|+.||+|+|+ +++.|+
T Consensus 139 l~~~l~~~~~~~g-~~~~~~~~v~~i~~~~~----~~~~v~~~~--------g~~~a~~vV~a~G~-~~~~l~ 197 (337)
T TIGR02352 139 LLKALEKALEKLG-VEIIEHTEVQHIEIRGE----KVTAIVTPS--------GDVQADQVVLAAGA-WAGELL 197 (337)
T ss_pred HHHHHHHHHHHcC-CEEEccceEEEEEeeCC----EEEEEEcCC--------CEEECCEEEEcCCh-hhhhcc
Confidence 4445566666777 99999999999987654 677776431 26899999999997 566654
No 178
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.73 E-value=3e-05 Score=89.14 Aligned_cols=34 Identities=41% Similarity=0.524 Sum_probs=32.5
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+|||||||+|++|..+|.+|++.|++|+|+|++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~ 37 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5999999999999999999999999999999964
No 179
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.73 E-value=3.6e-05 Score=80.57 Aligned_cols=41 Identities=34% Similarity=0.518 Sum_probs=36.7
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCCCCc
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCARSNL 311 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~~~~ 311 (781)
.||+||||||..|+++|..|++.|++||||||-++.....+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccc
Confidence 38999999999999999999999999999999987766544
No 180
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.72 E-value=3e-05 Score=89.09 Aligned_cols=35 Identities=37% Similarity=0.585 Sum_probs=33.2
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+|||||||+|++|+.+|.+|++.|++|+|+||+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46999999999999999999999999999999975
No 181
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.70 E-value=3.1e-05 Score=89.02 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=31.8
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|||||||||++|..+|.+|++.|++|+|+||+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 799999999999999999999999999999975
No 182
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.70 E-value=3.2e-05 Score=88.91 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=31.5
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
+|||||||+|++|..+|.+|++.|++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 499999999999999999999999999999973
No 183
>PLN02487 zeta-carotene desaturase
Probab=97.69 E-value=0.00064 Score=79.45 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=33.7
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCA 307 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~ 307 (781)
..+|+|||+|++|+++|+.|+++|++|+|+|+.+...
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 3589999999999999999999999999999987543
No 184
>PLN02507 glutathione reductase
Probab=97.67 E-value=3.8e-05 Score=88.88 Aligned_cols=35 Identities=37% Similarity=0.375 Sum_probs=33.0
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEK 302 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEk 302 (781)
...+|||||||+|++|..+|.+|++.|++|+|+|+
T Consensus 22 ~~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 22 THYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred cccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 35679999999999999999999999999999997
No 185
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.66 E-value=3.8e-05 Score=86.08 Aligned_cols=35 Identities=37% Similarity=0.516 Sum_probs=33.2
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+|||||||+|++|+++|..|+++|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 56999999999999999999999999999999975
No 186
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.66 E-value=4.5e-05 Score=87.57 Aligned_cols=35 Identities=40% Similarity=0.457 Sum_probs=33.2
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+|||||||+|++|+.+|.+|++.|++|+|+|++.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 46999999999999999999999999999999975
No 187
>PRK13748 putative mercuric reductase; Provisional
Probab=97.65 E-value=4.2e-05 Score=90.09 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=33.1
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+|||||||+|++|+.+|.+|++.|++|+|||++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 46999999999999999999999999999999974
No 188
>PRK14694 putative mercuric reductase; Provisional
Probab=97.65 E-value=4.3e-05 Score=87.89 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=33.4
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
..|||||||+|++|.++|.+|++.|++|+|+|++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 57999999999999999999999999999999975
No 189
>PRK09126 hypothetical protein; Provisional
Probab=97.65 E-value=4e-05 Score=85.94 Aligned_cols=35 Identities=40% Similarity=0.573 Sum_probs=33.4
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
+|||||||+|++|+++|..|+++|++|+|+||...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 58999999999999999999999999999999874
No 190
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.63 E-value=4.8e-05 Score=87.61 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=31.9
Q ss_pred CcccEEEECCCchHHHHHHHHHhC-CCeEEEEcCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKA-GYKVLVLEKG 303 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~-G~kVlVLEkG 303 (781)
.+|||||||+|++|..+|.++|+. |+||+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 469999999999999999999997 9999999985
No 191
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.62 E-value=5.4e-05 Score=89.71 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=32.4
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
.+|||||||+|+||..+|.++++.|+||+|||++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4799999999999999999999999999999975
No 192
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.62 E-value=5.5e-05 Score=84.72 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=33.5
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
...|||||||+|++|+++|..|+++|++|+|||+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 346899999999999999999999999999999975
No 193
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.61 E-value=4.7e-05 Score=85.84 Aligned_cols=34 Identities=35% Similarity=0.635 Sum_probs=32.5
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+|||+|||+|++|+++|..|+++|++|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 4899999999999999999999999999999976
No 194
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.61 E-value=5.2e-05 Score=86.54 Aligned_cols=35 Identities=40% Similarity=0.658 Sum_probs=33.1
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
+|||||||||++|+.+|.+|++.|++|+|+|+++.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 59999999999999999999999999999999753
No 195
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.61 E-value=4.7e-05 Score=85.68 Aligned_cols=33 Identities=36% Similarity=0.558 Sum_probs=31.4
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+||||||+|++|+++|..||++|++|+||||..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 699999999999999999999999999999964
No 196
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.59 E-value=6.6e-05 Score=83.17 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=33.6
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCAR 308 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~ 308 (781)
+||+|||||++|+++|.+|++.|.+|+|||+......
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 7999999999999999999999999999999765443
No 197
>PRK08013 oxidoreductase; Provisional
Probab=97.58 E-value=5.8e-05 Score=85.04 Aligned_cols=35 Identities=34% Similarity=0.423 Sum_probs=33.1
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
+|||||||+|++|+++|..|++.|++|+||||.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 58999999999999999999999999999999863
No 198
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.58 E-value=7.4e-05 Score=73.49 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=43.0
Q ss_pred hchHHHhhCCCeEEecCcEEEEEEccCC-CCcceEEEEEEEEee----CCc---eeEEEEeccEEEEecc
Q 003990 449 TWLVDLVNSGNSAILPGCEAIEVLHKKR-RDRNVATGVAFEFQY----MGA---KDICVVESKVTIVACG 510 (781)
Q Consensus 449 ~~L~~a~~~gn~~i~~~~~V~~I~~~~g-g~~~ra~GV~~~~~~----~g~---g~~~~i~Ak~VVLAaG 510 (781)
+.+...++.+|++++.-+.|++++...+ .+..|+.||...++- .+. -....|+|+.||.++|
T Consensus 162 Tvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tG 231 (328)
T KOG2960|consen 162 TVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTG 231 (328)
T ss_pred HHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccC
Confidence 4556677899999999999999877643 234588999887631 110 0123688888888887
No 199
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.57 E-value=6.6e-05 Score=86.19 Aligned_cols=35 Identities=43% Similarity=0.611 Sum_probs=32.6
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+|||||||||++|+.+|.+|++.|++|+|||++.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 36 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 35999999999999999999999999999999943
No 200
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.57 E-value=7e-05 Score=86.34 Aligned_cols=33 Identities=39% Similarity=0.542 Sum_probs=31.8
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEK 302 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEk 302 (781)
.+||+||||+|++|+.+|.+|++.|++|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 469999999999999999999999999999998
No 201
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.54 E-value=0.00035 Score=81.18 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=28.2
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
-|+|||||++|+++|..|.+.|++|+++||.+.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 489999999999999999999999999999874
No 202
>PRK07045 putative monooxygenase; Reviewed
Probab=97.53 E-value=7.2e-05 Score=83.81 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=33.9
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++||+|||+|++|+++|..|+++|++|+|+||.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 568999999999999999999999999999999873
No 203
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.53 E-value=7.6e-05 Score=85.13 Aligned_cols=34 Identities=38% Similarity=0.585 Sum_probs=32.8
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+|||||||||++|+.+|.+|++.|++|+|+||++
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 6999999999999999999999999999999986
No 204
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.51 E-value=8.5e-05 Score=83.20 Aligned_cols=34 Identities=44% Similarity=0.515 Sum_probs=32.3
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+|||+|||+|++|+++|..|++.|++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4899999999999999999999999999999865
No 205
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.50 E-value=0.00084 Score=83.74 Aligned_cols=37 Identities=30% Similarity=0.256 Sum_probs=33.8
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
...+|+|||||++|+++|..|++.|++|+|+|+++..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3579999999999999999999999999999998643
No 206
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.50 E-value=9.3e-05 Score=84.54 Aligned_cols=33 Identities=39% Similarity=0.654 Sum_probs=28.0
Q ss_pred cEEEECCCchHHHHHHHHHhCC---CeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAG---YKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G---~kVlVLEkG~~ 305 (781)
||||||+|++|..+|..|++.+ ++|+|||+...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 7999999999999999999988 89999999864
No 207
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.47 E-value=9.8e-05 Score=82.91 Aligned_cols=34 Identities=35% Similarity=0.636 Sum_probs=32.5
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+||+|||+|++|+++|..|+++|++|+|+||.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4899999999999999999999999999999986
No 208
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.47 E-value=9.5e-05 Score=82.80 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=30.9
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
||||||+|++|+++|+.|++.|++|+|||+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 89999999999999999999999999999975
No 209
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.47 E-value=0.0001 Score=86.52 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=33.5
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
..|||||||||++|+.+|.+|++.|++|+|+|++..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~ 38 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF 38 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 459999999999999999999999999999999753
No 210
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.46 E-value=0.0001 Score=83.10 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=31.8
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
.+||+|||+|++|+++|..|+++|++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 589999999999999999999999999999996
No 211
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00012 Score=78.85 Aligned_cols=35 Identities=40% Similarity=0.579 Sum_probs=31.8
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCe-EEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYK-VLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~k-VlVLEkG~ 304 (781)
..|||||||||++|++||.+++++|++ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 469999999999999999999999998 88888864
No 212
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.43 E-value=0.00084 Score=75.52 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=31.5
Q ss_pred EEEECCCchHHHHHHHHHhCC--CeEEEEcCCCCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAG--YKVLVLEKGSYCA 307 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G--~kVlVLEkG~~~~ 307 (781)
|+|||||++|+++|++|.+++ ..|.|+|++++..
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 799999999999999999999 9999999997643
No 213
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.43 E-value=0.00012 Score=78.52 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=31.8
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|||||||||++|+.+|..|++.|++|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 799999999999999999999999999999975
No 214
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.42 E-value=0.00012 Score=81.64 Aligned_cols=33 Identities=33% Similarity=0.491 Sum_probs=31.6
Q ss_pred cEEEECCCchHHHHHHHHHhCC-CeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAG-YKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G-~kVlVLEkG~~ 305 (781)
||||||+|++|+++|..|+++| ++|+|+||...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 8999999999999999999999 99999999864
No 215
>PRK14727 putative mercuric reductase; Provisional
Probab=97.42 E-value=0.00016 Score=83.45 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=33.6
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+..||+||||+|++|..+|.+|++.|.+|+|+|++.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 356999999999999999999999999999999974
No 216
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.42 E-value=0.00012 Score=84.74 Aligned_cols=36 Identities=39% Similarity=0.468 Sum_probs=33.0
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
+...|||||||+|++|..+|.+|++.|++|+|||++
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 345799999999999999999999999999999974
No 217
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.42 E-value=0.00011 Score=82.53 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=31.9
Q ss_pred cccEEEECCCchHHHHHHHHHhCC--CeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAG--YKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G--~kVlVLEkG~ 304 (781)
.|||||||+|++|+++|..|+++| ++|+||||.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 389999999999999999999995 9999999986
No 218
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.41 E-value=0.00013 Score=81.42 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=31.8
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+||+|||+|++|+++|..|++.|++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999999999999975
No 219
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.40 E-value=0.00013 Score=81.85 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=32.0
Q ss_pred CcccEEEECCCchHHHHHHHHHhC---CCeEEEEcCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKA---GYKVLVLEKG 303 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~---G~kVlVLEkG 303 (781)
..+||+|||+|++|+++|+.|+++ |++|+|+||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 358999999999999999999998 9999999995
No 220
>PTZ00367 squalene epoxidase; Provisional
Probab=97.39 E-value=0.00015 Score=84.74 Aligned_cols=35 Identities=37% Similarity=0.612 Sum_probs=33.2
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+|||||||+|++|+++|..|+++|++|+||||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 57999999999999999999999999999999965
No 221
>PLN02576 protoporphyrinogen oxidase
Probab=97.38 E-value=0.00018 Score=83.35 Aligned_cols=41 Identities=34% Similarity=0.333 Sum_probs=36.1
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhC-CCeEEEEcCCCCCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKA-GYKVLVLEKGSYCAR 308 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~-G~kVlVLEkG~~~~~ 308 (781)
...++||||||||.+|+++|++|+++ |++|+|||+.+....
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 34567999999999999999999999 999999999876543
No 222
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.38 E-value=0.00012 Score=83.33 Aligned_cols=33 Identities=36% Similarity=0.529 Sum_probs=31.3
Q ss_pred ccEEEECCCchHHHHHHHHHh----CCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAK----AGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~----~G~kVlVLEkG~ 304 (781)
|||||||+|++|+++|+.|++ .|++|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 799999999999999999999 899999999954
No 223
>PRK09897 hypothetical protein; Provisional
Probab=97.38 E-value=0.0021 Score=74.51 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=30.0
Q ss_pred ccEEEECCCchHHHHHHHHHhCC--CeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAG--YKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G--~kVlVLEkG~~ 305 (781)
.+|+|||+|++|+.+|.+|++.+ ++|.|+|+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 47999999999999999999864 68999999763
No 224
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.32 E-value=0.00021 Score=82.04 Aligned_cols=40 Identities=33% Similarity=0.389 Sum_probs=35.7
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCAR 308 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~ 308 (781)
....+|||||||++|++||.+|.+.|.+|+|||+-+....
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 3568999999999999999999999999999999876543
No 225
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.32 E-value=0.0021 Score=73.39 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=41.7
Q ss_pred HhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCC
Q 003990 454 LVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLK 524 (781)
Q Consensus 454 a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~ 524 (781)
..++| ++|+++++|++|..++ ++.++... + ..+.++.||+|+|...+..+|..+|+.
T Consensus 201 l~~~g-I~v~~~~~v~~i~~~~-----~~~~v~~~----~----~~i~~d~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 201 LRENG-VELHLNEFVKSLIGED-----KVEGVVTD----K----GEYEADVVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHHCC-CEEEcCCEEEEEecCC-----cEEEEEeC----C----CEEEcCEEEECcCCCcCHHHHHhcCcc
Confidence 34555 9999999999995432 44444332 1 158999999999977677889989885
No 226
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.31 E-value=0.00022 Score=79.34 Aligned_cols=32 Identities=44% Similarity=0.807 Sum_probs=30.8
Q ss_pred cEEEECCCchHHHHHHHHHhC--CCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKA--GYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~--G~kVlVLEkG~ 304 (781)
||||||+|++|+.+|++|+++ |++|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999997 99999999986
No 227
>PLN02268 probable polyamine oxidase
Probab=97.30 E-value=0.00023 Score=81.15 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=33.4
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCAR 308 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~ 308 (781)
+|||||+|++|+++|+.|.++|++|+|||+.++...
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 799999999999999999999999999999887644
No 228
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.27 E-value=0.00024 Score=81.10 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=31.9
Q ss_pred cEEEECCCchHHHHHHHHHhCC--CeEEEEcCCCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAG--YKVLVLEKGSYCA 307 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G--~kVlVLEkG~~~~ 307 (781)
+|||||||++|+++|+.|+++| ++|+|+|+.+...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 5899999999999999999988 8999999987654
No 229
>PRK07846 mycothione reductase; Reviewed
Probab=97.26 E-value=0.00024 Score=81.32 Aligned_cols=32 Identities=28% Similarity=0.693 Sum_probs=28.1
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+||+||||+|++|..+|.++ .|+||+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC
Confidence 48999999999999888763 599999999965
No 230
>PRK07236 hypothetical protein; Provisional
Probab=97.25 E-value=0.00026 Score=79.36 Aligned_cols=34 Identities=38% Similarity=0.535 Sum_probs=32.5
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
..||||||||++|+++|..|++.|++|+|+||.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4899999999999999999999999999999975
No 231
>PRK06753 hypothetical protein; Provisional
Probab=97.22 E-value=0.00028 Score=78.58 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=31.5
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
||||||||++|+++|..|+++|++|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 799999999999999999999999999999873
No 232
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.21 E-value=0.00028 Score=80.76 Aligned_cols=32 Identities=28% Similarity=0.574 Sum_probs=27.7
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+||+||||+|++|..+|.+ .+|+||+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 5999999999999888654 4699999999865
No 233
>PRK06996 hypothetical protein; Provisional
Probab=97.20 E-value=0.00033 Score=78.86 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=33.2
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCC----CeEEEEcCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAG----YKVLVLEKGS 304 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G----~kVlVLEkG~ 304 (781)
...+|||+|||+|++|+++|..|+++| ++|+|||+.+
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 456799999999999999999999986 5799999975
No 234
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.17 E-value=0.00035 Score=80.15 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=32.8
Q ss_pred ccEEEECCCchHHHHHHHHHhC----CCeEEEEcCCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKA----GYKVLVLEKGSYC 306 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~----G~kVlVLEkG~~~ 306 (781)
.||||||||++|+++|++|+++ |++|+|+|+.+..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 5899999999999999999999 9999999998764
No 235
>PRK10262 thioredoxin reductase; Provisional
Probab=97.14 E-value=0.00038 Score=75.89 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=33.4
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+..+||||||+|++|+.+|..|++.|++|+++|+..
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~ 39 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME 39 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec
Confidence 3467999999999999999999999999999998643
No 236
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0037 Score=66.21 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=55.0
Q ss_pred hhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCCCcccccccc
Q 003990 455 VNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKNANIGKNLHL 534 (781)
Q Consensus 455 ~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~p~VG~nL~d 534 (781)
...+|++|++|+.-++|.-+++ +|+|+.+++.. ++..+.+.=..|.+--|-+-+...|.-+ +....-|.-+-|
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gdg~----kV~Gl~Y~dr~--sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD 472 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGDGD----KVTGLEYRDRV--SGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVD 472 (520)
T ss_pred hcCCCcEEEecceeeEEecCCc----eecceEEEecc--CCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEe
Confidence 3568999999999999987654 99999999843 3466677668899999988888888866 544444554444
No 237
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.13 E-value=0.00041 Score=79.60 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=31.2
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
+|||||+|++|..+|.+|++.|++|+||||+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 689999999999999999999999999999763
No 238
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.13 E-value=0.0053 Score=72.43 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=32.8
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
..-+|+|||+|++|+.+|..|++.|++|+|+|+.+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~ 171 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK 171 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 345899999999999999999999999999999764
No 239
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.13 E-value=0.00048 Score=77.03 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=37.5
Q ss_pred hhchHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHH
Q 003990 448 ETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLK 519 (781)
Q Consensus 448 ~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl 519 (781)
..+...+.+ | ++|++++.|+.|..+++ + .+|.+. ++ ..++|+.||+|+|++ ++.|+.
T Consensus 139 ~~l~~~~~~-G-~~i~~~~~V~~i~~~~~----~-~~v~t~---~g----~~~~a~~vV~a~G~~-~~~l~~ 195 (381)
T TIGR03197 139 RALLAHAGI-R-LTLHFNTEITSLERDGE----G-WQLLDA---NG----EVIAASVVVLANGAQ-AGQLAQ 195 (381)
T ss_pred HHHHhccCC-C-cEEEeCCEEEEEEEcCC----e-EEEEeC---CC----CEEEcCEEEEcCCcc-cccccc
Confidence 344444444 5 99999999999987653 3 234322 12 247899999999974 555543
No 240
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.11 E-value=0.00053 Score=68.93 Aligned_cols=32 Identities=44% Similarity=0.648 Sum_probs=30.5
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
||||||||++|+.+|.+|++.|.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998865
No 241
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.10 E-value=0.0069 Score=68.16 Aligned_cols=35 Identities=17% Similarity=0.406 Sum_probs=31.2
Q ss_pred ccEEEECCCchHHHHHHHHHhCCC--eEEEEcCCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGY--KVLVLEKGSYC 306 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~--kVlVLEkG~~~ 306 (781)
.+|||||+|++|+.+|..|++.|. +|+|+++.++.
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 479999999999999999999876 79999998653
No 242
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.07 E-value=0.00048 Score=76.80 Aligned_cols=34 Identities=32% Similarity=0.302 Sum_probs=31.9
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
-||+|||||.+|+.+|+.||+.|++|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 4899999999999999999999999999998764
No 243
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.06 E-value=0.014 Score=65.71 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=41.7
Q ss_pred hhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEec-cEEEEeccCC
Q 003990 455 VNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVES-KVTIVACGAL 512 (781)
Q Consensus 455 ~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~A-k~VVLAaGai 512 (781)
.++| |+|..+++|+.|.++..++.+.|+++.+.. +|..+.+.+.. |.|++.-|++
T Consensus 218 ~~~G-V~F~~~t~V~di~~~~~~~~~~~~~i~~~~--~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 218 KSQG-VDFRFNTKVTDIDFDITGDKKTATRIHIEQ--DGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHCC-CEEECCCEEEEEEEEccCCCeeEEEEEEEc--CCCeeEEEeCCCCEEEEECCcc
Confidence 4577 999999999999997655566888888774 33334455555 8999999975
No 244
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.06 E-value=0.00049 Score=81.94 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=33.7
Q ss_pred CCCcccEEEECCCchHHHHHHHHHh-CCCeEEEEcCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAK-AGYKVLVLEKGS 304 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~-~G~kVlVLEkG~ 304 (781)
+..++||+|||+|++|+++|..|++ .|.+|+||||.+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 3457999999999999999999999 599999999975
No 245
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.00053 Score=77.02 Aligned_cols=36 Identities=31% Similarity=0.367 Sum_probs=33.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCAR 308 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~ 308 (781)
-|+|+|+|.+|+++|++||++|++|+|+|++++...
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 389999999999999999999999999999987543
No 246
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.04 E-value=0.00053 Score=79.17 Aligned_cols=33 Identities=39% Similarity=0.509 Sum_probs=31.7
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
+||+||||+|++|..+|.+|++.|++|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 599999999999999999999999999999984
No 247
>PRK05868 hypothetical protein; Validated
Probab=97.03 E-value=0.00057 Score=76.22 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=31.4
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
||+|||+|++|+++|..|+++|++|+|+||.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 899999999999999999999999999999763
No 248
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.95 E-value=0.00078 Score=72.16 Aligned_cols=35 Identities=37% Similarity=0.481 Sum_probs=33.2
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.+|||||||+|++|-++|.+.|+.|++...+|+-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccC
Confidence 58999999999999999999999999999999954
No 249
>PLN02568 polyamine oxidase
Probab=96.94 E-value=0.0009 Score=78.01 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=33.9
Q ss_pred CcccEEEECCCchHHHHHHHHHhCC-----CeEEEEcCCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAG-----YKVLVLEKGSYCA 307 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G-----~kVlVLEkG~~~~ 307 (781)
...||||||+|++|+++|.+|++.| ++|+|+|+.....
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 3479999999999999999999887 9999999987643
No 250
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.93 E-value=0.0034 Score=68.98 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=27.3
Q ss_pred cccEEEECCCchHHHHHHHHHhCC-CeEEEEcCCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAG-YKVLVLEKGSY 305 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G-~kVlVLEkG~~ 305 (781)
.||+|+||.|++++++|..|.+.+ .+++.|||-+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999999885 99999998663
No 251
>PLN02676 polyamine oxidase
Probab=96.92 E-value=0.00091 Score=77.22 Aligned_cols=38 Identities=29% Similarity=0.421 Sum_probs=34.4
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGSYCA 307 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~~~~ 307 (781)
..+||||||+|.+|+++|++|++.|. +|+|||+.....
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence 46899999999999999999999998 699999987643
No 252
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.90 E-value=0.001 Score=78.66 Aligned_cols=37 Identities=38% Similarity=0.496 Sum_probs=34.1
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
....++|+|||||++|+++|..|++.|++|+|+||.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3567899999999999999999999999999999964
No 253
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.89 E-value=0.0017 Score=68.85 Aligned_cols=35 Identities=40% Similarity=0.424 Sum_probs=33.0
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
..+||++|||+|.+|..+|.+.|+.|.||.|+|..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 35899999999999999999999999999999986
No 254
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.88 E-value=0.0014 Score=73.77 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
+|+|||||++|+++|..|+++|++|+|+||.+.
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 699999999999999999999999999999763
No 255
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.85 E-value=0.001 Score=74.74 Aligned_cols=42 Identities=24% Similarity=0.494 Sum_probs=33.4
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCARSN 310 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~~~ 310 (781)
..+|||||+|.|..-+.+|..||+.|+|||.||+.+++....
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~ 43 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEW 43 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCch
Confidence 478999999999999999999999999999999999987643
No 256
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.82 E-value=0.0011 Score=76.33 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHHHHHhC------CCeEEEEcCCCCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKA------GYKVLVLEKGSYCAR 308 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~------G~kVlVLEkG~~~~~ 308 (781)
+|||||||++|+++|++|+++ |++|+|||+.+....
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 699999999999999999986 489999999876543
No 257
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.80 E-value=0.0011 Score=74.33 Aligned_cols=34 Identities=32% Similarity=0.372 Sum_probs=31.6
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.||+|||||.+|+.+|..||+.|++|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 4899999999999999999999999999998653
No 258
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.78 E-value=0.031 Score=54.17 Aligned_cols=31 Identities=16% Similarity=0.441 Sum_probs=27.2
Q ss_pred EEECCCchHHHHHHHHHhC-----CCeEEEEcCCCC
Q 003990 275 VVVGSGSGGGLIAGVLAKA-----GYKVLVLEKGSY 305 (781)
Q Consensus 275 IVVGsG~~G~vaA~~LA~~-----G~kVlVLEkG~~ 305 (781)
+|||+|+.|+.++.+|.+. ..+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 4999999999999999986 478999999653
No 259
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.78 E-value=0.0013 Score=75.65 Aligned_cols=32 Identities=38% Similarity=0.532 Sum_probs=30.8
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|+||||+|++|..+|..|++.|++|+|+||+.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999999999999875
No 260
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.78 E-value=0.0012 Score=71.91 Aligned_cols=33 Identities=36% Similarity=0.423 Sum_probs=31.0
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-+|||||||++|+++|..|++.|.+|+|+|+-.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 479999999999999999999999999999944
No 261
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.73 E-value=0.0014 Score=80.69 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=33.4
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
...||+|||||+||+++|+.|++.|++|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 458999999999999999999999999999999764
No 262
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.72 E-value=0.0016 Score=71.77 Aligned_cols=36 Identities=33% Similarity=0.435 Sum_probs=32.9
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
.=+++|||||.+|+.+|..||+.|++|.|+||.+..
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsi 159 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSI 159 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 346899999999999999999999999999998853
No 263
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.002 Score=67.88 Aligned_cols=36 Identities=36% Similarity=0.385 Sum_probs=33.1
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
...+||.||||+|.+|+++|.+.|.-|.||.+||-=
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 346899999999999999999999999999999864
No 264
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.52 E-value=0.0037 Score=70.75 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=30.3
Q ss_pred cEEEECCCchHHHHHHHHHhCC-CeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAG-YKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G-~kVlVLEkG~~ 305 (781)
.|+|||+|++|+++|..|+++| .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 5899999999999999999998 59999999763
No 265
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.51 E-value=0.004 Score=53.01 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=31.2
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
++|||||..|+-+|..|++.|.+|.|||+.+..
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 799999999999999999999999999999853
No 266
>PLN02529 lysine-specific histone demethylase 1
Probab=96.48 E-value=0.0031 Score=75.60 Aligned_cols=37 Identities=32% Similarity=0.426 Sum_probs=34.0
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
...||||||+|++|+.+|..|+++|++|+|+|+.+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 195 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP 195 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence 4679999999999999999999999999999997653
No 267
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.46 E-value=0.0032 Score=75.87 Aligned_cols=38 Identities=39% Similarity=0.495 Sum_probs=34.6
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
....+|||||||++|+++|+.|++.|++|+|+|+....
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 34689999999999999999999999999999997654
No 268
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.41 E-value=0.011 Score=65.40 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=56.2
Q ss_pred ccHHHHHHHHHHcCCCCCCCCCCCCCCCcceeccccCCCCcccchhhhchHHHhhCCCeEEecCcEEEEEEccCCCCcce
Q 003990 402 FNNAVLRRGCKELGYPVNNIPRNSPPDHYCGWCCLGCKDGSKKGTSETWLVDLVNSGNSAILPGCEAIEVLHKKRRDRNV 481 (781)
Q Consensus 402 ~~~~~l~~~~~~lG~~~~~~p~n~~~~~~~g~~~~gc~~g~k~s~~~~~L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~r 481 (781)
|.++.+++.++++|++...-. + |.. + +......+...+++..+.+.| ++|+++++|+.| +++ .
T Consensus 54 f~~~d~~~fF~~~Gi~~~~e~-~-------grv-f-P~S~~A~sVv~~L~~~l~~~g-V~i~~~~~V~~i--~~~----~ 116 (376)
T TIGR03862 54 FDAVALQDWARGLGIETFVGS-S-------GRV-F-PVEMKAAPLLRAWLKRLAEQG-VQFHTRHRWIGW--QGG----T 116 (376)
T ss_pred CCHHHHHHHHHHCCCceEECC-C-------CEE-C-CCCCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEE--eCC----c
Confidence 456788899999999765311 1 111 1 112222334445555555555 999999999999 322 2
Q ss_pred EEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHH
Q 003990 482 ATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNL 517 (781)
Q Consensus 482 a~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~L 517 (781)
.+|.+.. ....++|+.||||+|+...|.+
T Consensus 117 -~~v~~~~------~~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 117 -LRFETPD------GQSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred -EEEEECC------CceEEecCEEEEcCCCcccccc
Confidence 3444321 1235899999999998765543
No 269
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.35 E-value=0.0031 Score=71.27 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=32.8
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.-+|+|||+|++|+++|+.|.+.|+.|+|+||.+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 45899999999999999999999999999999874
No 270
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.33 E-value=0.0031 Score=78.12 Aligned_cols=36 Identities=39% Similarity=0.422 Sum_probs=33.2
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
...+|+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence 357899999999999999999999999999999764
No 271
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.23 E-value=0.0054 Score=70.40 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=33.8
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
...+|+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 4579999999999999999999999999999998643
No 272
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.21 E-value=0.0042 Score=76.31 Aligned_cols=36 Identities=33% Similarity=0.430 Sum_probs=33.2
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
..-+|+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 356899999999999999999999999999999764
No 273
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.20 E-value=0.0058 Score=74.62 Aligned_cols=35 Identities=43% Similarity=0.515 Sum_probs=32.7
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
...||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 46799999999999999999999999999999964
No 274
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.19 E-value=0.0048 Score=74.06 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=33.3
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
...+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 457999999999999999999999999999999764
No 275
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.14 E-value=0.049 Score=66.76 Aligned_cols=58 Identities=21% Similarity=0.351 Sum_probs=43.7
Q ss_pred hhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC
Q 003990 455 VNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN 525 (781)
Q Consensus 455 ~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~ 525 (781)
.+.| ++|++++.|++|..++ ++.+|.+.+ + ..+.++.||+|+|.--...|+..+|+..
T Consensus 193 ~~~G-V~v~~~~~v~~i~~~~-----~~~~v~~~d---G----~~i~~D~Vi~a~G~~Pn~~la~~~gl~~ 250 (785)
T TIGR02374 193 EQKG-LTFLLEKDTVEIVGAT-----KADRIRFKD---G----SSLEADLIVMAAGIRPNDELAVSAGIKV 250 (785)
T ss_pred HHcC-CEEEeCCceEEEEcCC-----ceEEEEECC---C----CEEEcCEEEECCCCCcCcHHHHhcCCcc
Confidence 3455 9999999999987542 566676643 2 2688999999999876777887888754
No 276
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.02 E-value=0.0055 Score=74.80 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=31.4
Q ss_pred cEEEECCCchHHHHHHHHHhC--CCeEEEEcCCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKA--GYKVLVLEKGSYC 306 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~--G~kVlVLEkG~~~ 306 (781)
+|+|||||++|+++|..|++. |++|+|+||.+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 689999999999999999998 8999999998753
No 277
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.99 E-value=0.0085 Score=68.79 Aligned_cols=36 Identities=33% Similarity=0.361 Sum_probs=32.7
Q ss_pred CcccEEEECCCchHHHHHHHHHh--CCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAK--AGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~--~G~kVlVLEkG~~ 305 (781)
....|+|||||++|+.+|..|++ .|++|.|+|+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 35689999999999999999997 6999999999874
No 278
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.88 E-value=0.083 Score=58.97 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=30.8
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-.|+|||+|..|+-+|..|++.|.+|.|+|+++
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 369999999999999999999999999999876
No 279
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.88 E-value=0.086 Score=64.92 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=43.2
Q ss_pred hhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCC
Q 003990 455 VNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLK 524 (781)
Q Consensus 455 ~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~ 524 (781)
.++| ++|++++.|++|..++. .....|.+.+ + ..+.++.||+|+|.--+..|+..+|+.
T Consensus 198 ~~~G-V~v~~~~~v~~I~~~~~---~~~~~v~~~d---G----~~i~~D~Vv~A~G~rPn~~L~~~~Gl~ 256 (847)
T PRK14989 198 ESMG-VRVHTSKNTLEIVQEGV---EARKTMRFAD---G----SELEVDFIVFSTGIRPQDKLATQCGLA 256 (847)
T ss_pred HHCC-CEEEcCCeEEEEEecCC---CceEEEEECC---C----CEEEcCEEEECCCcccCchHHhhcCcc
Confidence 3556 99999999999975431 1344555432 2 268899999999987777788888985
No 280
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.82 E-value=0.011 Score=70.95 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=33.7
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
...+|+|||+|++|+.+|..|++.|++|+|+|+.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3479999999999999999999999999999998653
No 281
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.81 E-value=0.0079 Score=73.16 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=32.1
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
....|+|||+|++|+.+|+.|++.|++|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 45689999999999999999999999999999853
No 282
>PLN03000 amine oxidase
Probab=95.78 E-value=0.0099 Score=71.89 Aligned_cols=39 Identities=36% Similarity=0.420 Sum_probs=35.0
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCAR 308 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~ 308 (781)
...||||||+|.+|+.+|+.|++.|++|+|+|+.+....
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 458999999999999999999999999999999876443
No 283
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.76 E-value=0.013 Score=64.81 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=33.0
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
...+|+|||+|.+|+.+|..|++.|++|+|+|+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 346899999999999999999999999999999864
No 284
>PLN02976 amine oxidase
Probab=95.72 E-value=0.011 Score=74.05 Aligned_cols=38 Identities=37% Similarity=0.465 Sum_probs=34.3
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
...+||+|||+|++|+.+|+.|++.|++|+|||+....
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 34589999999999999999999999999999997654
No 285
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.59 E-value=0.013 Score=67.38 Aligned_cols=36 Identities=31% Similarity=0.495 Sum_probs=33.3
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
...+|+|||+|++|+.+|..|++.|++|+|+|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 457999999999999999999999999999999864
No 286
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.47 E-value=0.016 Score=66.98 Aligned_cols=35 Identities=37% Similarity=0.440 Sum_probs=32.7
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
..+|+|||+|++|+.+|..|++.|++|+|+|+.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 46999999999999999999999999999999864
No 287
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.45 E-value=0.013 Score=70.05 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=33.9
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
...+|+|||+|++|+++|+.|++.|++|+|+|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 3578999999999999999999999999999998753
No 288
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=95.13 E-value=0.023 Score=63.21 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=33.3
Q ss_pred CcccEEEECCCchHHHHHHHHHhCC-CeEEEEcCCCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAG-YKVLVLEKGSYCAR 308 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G-~kVlVLEkG~~~~~ 308 (781)
...-|||||+|++|+.||.+|-+.| ..|+|+|+.+....
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 3457999999999999999999775 68999999886543
No 289
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=95.12 E-value=0.044 Score=61.73 Aligned_cols=35 Identities=43% Similarity=0.397 Sum_probs=31.9
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
...||.+|||+|.+|+-+|..|++.|.+|.++-|-
T Consensus 53 ~~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl 87 (642)
T KOG2403|consen 53 DHTYDAVVVGAGGAGLRAARGLAELGEKTAVITKL 87 (642)
T ss_pred eeeceeEEEeccchhhhhhhhhhhcCceEEEEecc
Confidence 34599999999999999999999999999999774
No 290
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.10 E-value=0.021 Score=62.20 Aligned_cols=37 Identities=38% Similarity=0.544 Sum_probs=32.4
Q ss_pred CCcccEEEECCCchHHHHHHHHHhC----CCeEEEEcCCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKA----GYKVLVLEKGSY 305 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~----G~kVlVLEkG~~ 305 (781)
...|||||||||+.|.+.|..|... -+||+++|.+..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 3579999999999999999999864 589999999963
No 291
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.04 E-value=0.2 Score=55.97 Aligned_cols=53 Identities=30% Similarity=0.460 Sum_probs=37.7
Q ss_pred hCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHH-cCCCC
Q 003990 456 NSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKR-SGLKN 525 (781)
Q Consensus 456 ~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~-SGi~~ 525 (781)
+.| ++|++++.|++|..+ +|.+.+ + .. +|.++.||-|||. .-|.++.. +|+..
T Consensus 221 ~~G-V~v~l~~~Vt~v~~~---------~v~~~~---g--~~-~I~~~tvvWaaGv-~a~~~~~~l~~~e~ 274 (405)
T COG1252 221 KLG-VEVLLGTPVTEVTPD---------GVTLKD---G--EE-EIPADTVVWAAGV-RASPLLKDLSGLET 274 (405)
T ss_pred HCC-CEEEcCCceEEECCC---------cEEEcc---C--Ce-eEecCEEEEcCCC-cCChhhhhcChhhh
Confidence 345 999999999999654 355553 2 12 7999999999996 55555555 67653
No 292
>PRK13984 putative oxidoreductase; Provisional
Probab=94.83 E-value=0.033 Score=66.28 Aligned_cols=37 Identities=38% Similarity=0.365 Sum_probs=33.8
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
...+|+|||+|.+|+.+|..|++.|++|+|+|+.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4578999999999999999999999999999998753
No 293
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=0.035 Score=60.28 Aligned_cols=41 Identities=29% Similarity=0.502 Sum_probs=38.1
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCAR 308 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~ 308 (781)
...+|||||||.|.-=+++|...++.|.+||-||+..|+..
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG 45 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence 56789999999999999999999999999999999998754
No 294
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.66 E-value=0.42 Score=50.96 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=40.4
Q ss_pred CeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHc
Q 003990 459 NSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRS 521 (781)
Q Consensus 459 n~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~S 521 (781)
++++++++.|+++..++ ++.+|++.+.. .++..++.+|.||+|+|.-..+.+|..+
T Consensus 191 gv~~~~~~~v~~i~~~~-----~~~~v~~~~~~--~g~~~~i~~D~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 191 NIEFLWNSTVKEIVGDN-----KVEGVKIKNTV--TGEEEELKVDGVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CeEEEeccEEEEEEccC-----cEEEEEEEecC--CCceEEEEccEEEEeeCCCCChHHHHHh
Confidence 39999999999987542 56677665421 2345688999999999976666677665
No 295
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.019 Score=62.35 Aligned_cols=42 Identities=26% Similarity=0.518 Sum_probs=38.5
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCCCCc
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCARSNL 311 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~~~~ 311 (781)
.+|||||+|.|..=|+.+..|+.+|.+||.+||.+++...+.
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sa 44 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESA 44 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccc
Confidence 459999999999999999999999999999999999876553
No 296
>PRK10262 thioredoxin reductase; Provisional
Probab=94.53 E-value=0.47 Score=51.59 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=41.8
Q ss_pred CeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC
Q 003990 459 NSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN 525 (781)
Q Consensus 459 n~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~ 525 (781)
++++++++.|++|..+++ ++.+|++.+... .+...++.++.||++.|..-...|+ ++++.+
T Consensus 199 gV~i~~~~~v~~v~~~~~----~~~~v~~~~~~~-~~~~~~i~~D~vv~a~G~~p~~~l~-~~~l~~ 259 (321)
T PRK10262 199 NIILHTNRTLEEVTGDQM----GVTGVRLRDTQN-SDNIESLDVAGLFVAIGHSPNTAIF-EGQLEL 259 (321)
T ss_pred CeEEEeCCEEEEEEcCCc----cEEEEEEEEcCC-CCeEEEEECCEEEEEeCCccChhHh-hccccc
Confidence 499999999999976543 577787764211 1234578999999999975555544 445543
No 297
>PTZ00188 adrenodoxin reductase; Provisional
Probab=94.52 E-value=0.038 Score=62.94 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=30.7
Q ss_pred ccEEEECCCchHHHHHHHHH-hCCCeEEEEcCCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLA-KAGYKVLVLEKGSYC 306 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA-~~G~kVlVLEkG~~~ 306 (781)
.-|+|||||++|+.+|.+|+ +.|++|.|+||.+..
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 45999999999999999875 579999999998753
No 298
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=94.42 E-value=0.041 Score=60.34 Aligned_cols=40 Identities=28% Similarity=0.295 Sum_probs=33.4
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCe--EEEEcCCCCCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYK--VLVLEKGSYCAR 308 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~k--VlVLEkG~~~~~ 308 (781)
....+|+|||+|++|+++|+.|++.+.+ |+|.|+++....
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 4557999999999999999999999755 566999886543
No 299
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.38 E-value=0.051 Score=61.76 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=33.1
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
...+|||||+|.+|+.+|.+|...+.+|+|||+.+++
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 4579999999999999999998778999999998764
No 300
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.053 Score=58.37 Aligned_cols=41 Identities=22% Similarity=0.486 Sum_probs=37.8
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCARSN 310 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~~~ 310 (781)
..|||||+|.|.-=|+.+..|+-+|.+||+||+.+++...+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~ 45 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTS 45 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccc
Confidence 37999999999999999999999999999999999886654
No 301
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.95 E-value=0.056 Score=61.67 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=30.2
Q ss_pred cEEEECCCchHHHHHHHHHhC--CCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKA--GYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~--G~kVlVLEkG~~ 305 (781)
.|||||+|.+|+.+|.+|.+. +.+|+|+|+.++
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 699999999999999999876 689999999875
No 302
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.80 E-value=0.058 Score=61.46 Aligned_cols=34 Identities=32% Similarity=0.453 Sum_probs=32.0
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
-.|.|||||++|+.+|..|+++|+.|+|.|+-+.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 6899999999999999999999999999999764
No 303
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.71 E-value=0.053 Score=57.44 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|.|||+|.+|+-+|+++|++|.+|.+.|--+
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 47899999999999999999999999999765
No 304
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.22 E-value=0.11 Score=49.73 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=29.2
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
++|||+|..|+..|++|+++|++|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999875
No 305
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=92.99 E-value=1.2 Score=49.15 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=28.4
Q ss_pred CcccEEEECCCchHHHHHHHHHhCC--CeEEEEcCCCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAG--YKVLVLEKGSYC 306 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G--~kVlVLEkG~~~ 306 (781)
....|+|||||-.++-++..|.+.+ .+|.+|=|+..+
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 4568999999999999999999876 489898887643
No 306
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=92.82 E-value=0.095 Score=56.08 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=32.1
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCAR 308 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~ 308 (781)
.-+|.|||||++|+++|+.|++. ++|.|.|++.+...
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGG 44 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGG 44 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccC
Confidence 35799999999999999999985 68999999987544
No 307
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.72 E-value=0.12 Score=57.44 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHHh---CCCeEEEEcCCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAK---AGYKVLVLEKGSYC 306 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~---~G~kVlVLEkG~~~ 306 (781)
.|||||+|.+|..+|.+|.+ .+.+|+|+|+..+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 38999999999999999974 36899999998764
No 308
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=92.03 E-value=0.16 Score=56.81 Aligned_cols=35 Identities=40% Similarity=0.408 Sum_probs=32.8
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.-+++|||+|..|+.+|..|+++|++|+|+|+.+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~ 170 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADR 170 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccc
Confidence 46899999999999999999999999999999874
No 309
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.89 E-value=0.18 Score=48.84 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=28.9
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|.|||+|..|.++|..|+++|++|.+..+-.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 6899999999999999999999999998853
No 310
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=91.19 E-value=0.19 Score=53.13 Aligned_cols=37 Identities=30% Similarity=0.361 Sum_probs=31.8
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhC-C-CeEEEEcCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKA-G-YKVLVLEKGS 304 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~-G-~kVlVLEkG~ 304 (781)
...+|.|+|||||.||+.+|.++++. | -+|.|||-..
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 45789999999999999999999986 4 4899998754
No 311
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.15 E-value=0.26 Score=49.00 Aligned_cols=31 Identities=35% Similarity=0.689 Sum_probs=27.3
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|.|||+|..|...|..++.+|++|.++|..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 6899999999999999999999999999864
No 312
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.73 E-value=0.25 Score=53.50 Aligned_cols=32 Identities=34% Similarity=0.440 Sum_probs=30.2
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|.|||+|+.|+..|.+|+++|.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 48999999999999999999999999999974
No 313
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=90.67 E-value=0.28 Score=54.74 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=43.5
Q ss_pred hHHHhhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCCC
Q 003990 451 LVDLVNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLKN 525 (781)
Q Consensus 451 L~~a~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~~ 525 (781)
+...++..++++++++.|+++..+++ . ..|.+.+ + .++.++.||+|+|....+.++..+|+..
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~----~-~~v~~~~---g----~~i~~D~vI~a~G~~p~~~l~~~~gl~~ 251 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDS----G-IRATLDS---G----RSIEVDAVIAAAGLRPNTALARRAGLAV 251 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCC----E-EEEEEcC---C----cEEECCEEEECcCCCcchHHHHHCCCCc
Confidence 33333333499999999999986542 2 2243321 2 3688999999999876777888888754
No 314
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.61 E-value=0.32 Score=52.90 Aligned_cols=32 Identities=31% Similarity=0.629 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|.|||+|..|+..|..|+++|++|.++.++.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 49999999999999999999999999998864
No 315
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=90.57 E-value=0.28 Score=50.62 Aligned_cols=32 Identities=22% Similarity=0.552 Sum_probs=30.4
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.++|||+|-.|..+|..|++.|+.|+++|+-+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 58999999999999999999999999999975
No 316
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=90.38 E-value=0.45 Score=57.81 Aligned_cols=38 Identities=32% Similarity=0.368 Sum_probs=34.4
Q ss_pred CCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 269 VIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 269 ~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
..-.-|.|||||++|+.+|..|-++|+.|+|-||.+..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 34578999999999999999999999999999998754
No 317
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=90.28 E-value=0.31 Score=54.39 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=46.0
Q ss_pred CCCccccccccCccCCC--CCC-CccccCCCceeccCCcEEe-cCCcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhh
Q 003990 705 STPLSSAHQMGSCRMGI--DPK-TSVVNQMGETWGVEGLYLA-DTSVFPTALGVNPMVTVQAIAYCTAQSVLDVLRRK 778 (781)
Q Consensus 705 ~~~~~s~H~~GTcrMG~--~~~-~gVVD~~~rv~g~~nL~V~-DaSvfPt~~g~NP~lTi~AlA~~iA~~ia~~l~~~ 778 (781)
|+....+++...---|. +.. .=+||+++++-|.+|+||+ |.+.++.. +|.-.+.=.|.+.|+.+++.|++.
T Consensus 256 WaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~---~p~P~tAQ~A~Qqg~~~a~ni~~~ 330 (405)
T COG1252 256 WAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP---RPVPPTAQAAHQQGEYAAKNIKAR 330 (405)
T ss_pred EcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC---CCCCChhHHHHHHHHHHHHHHHHH
Confidence 44555566654431121 211 2379999999999999987 56666665 444445567888888888877654
No 318
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.16 E-value=0.34 Score=48.43 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=25.8
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|.|||.|-.|+++|..||++|++|+.+|...
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 7899999999999999999999999999875
No 319
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=89.54 E-value=0.4 Score=52.08 Aligned_cols=34 Identities=32% Similarity=0.297 Sum_probs=30.5
Q ss_pred ccEEEECCCchHHHHHHHHHhC--CCeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKA--GYKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~--G~kVlVLEkG~~ 305 (781)
.-|+|||||++|..+|..|-++ +.+|-|.||-+.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv 56 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV 56 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc
Confidence 4799999999999999999884 799999999874
No 320
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=89.39 E-value=0.4 Score=53.89 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|||+++.
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 699999999999999999999999999999863
No 321
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.62 E-value=0.46 Score=51.50 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|.|||+|..|+..|..|+++|++|+++++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 58999999999999999999999999999864
No 322
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=88.45 E-value=0.53 Score=54.30 Aligned_cols=33 Identities=36% Similarity=0.408 Sum_probs=31.3
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|||+++.
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 799999999999999999999999999999874
No 323
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.40 E-value=0.5 Score=50.81 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=28.6
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
+.|||+|..|+..|..|+++|++|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 789999999999999999999999999984
No 324
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.38 E-value=0.48 Score=51.04 Aligned_cols=29 Identities=41% Similarity=0.631 Sum_probs=28.2
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEK 302 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEk 302 (781)
|.|||+|..|+..|..|+++|++|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 78999999999999999999999999998
No 325
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=88.02 E-value=0.55 Score=47.39 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=31.8
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
+.....|+|||||+++-.+|.+++++-+|-+|.|-.
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~ 40 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGM 40 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence 334557999999999999999999999999999965
No 326
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=87.90 E-value=0.6 Score=53.58 Aligned_cols=34 Identities=32% Similarity=0.356 Sum_probs=31.6
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
-+++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 3799999999999999999999999999999864
No 327
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=87.89 E-value=0.66 Score=52.92 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=31.2
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.|+|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 699999999999999999999999999999874
No 328
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=87.88 E-value=5.6 Score=44.84 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=44.9
Q ss_pred hhCCCeEEecCcEEEEEEccCCCCcceEEEEEEEEeeCCceeEEEEeccEEEEeccCCCCHHHHHHcCCC
Q 003990 455 VNSGNSAILPGCEAIEVLHKKRRDRNVATGVAFEFQYMGAKDICVVESKVTIVACGALSTPNLLKRSGLK 524 (781)
Q Consensus 455 ~~~gn~~i~~~~~V~~I~~~~gg~~~ra~GV~~~~~~~g~g~~~~i~Ak~VVLAaGai~Tp~LLl~SGi~ 524 (781)
.++| ++|+.++.+..+..+..| +++-|...+ + .++.|+.||+..|+--...++.. |+.
T Consensus 266 e~kg-Vk~~~~t~~s~l~~~~~G---ev~~V~l~d---g----~~l~adlvv~GiG~~p~t~~~~~-g~~ 323 (478)
T KOG1336|consen 266 ENKG-VKFYLGTVVSSLEGNSDG---EVSEVKLKD---G----KTLEADLVVVGIGIKPNTSFLEK-GIL 323 (478)
T ss_pred HhcC-eEEEEecceeecccCCCC---cEEEEEecc---C----CEeccCeEEEeeccccccccccc-cce
Confidence 3555 999999999999877542 788888775 2 37899999999998766666665 543
No 329
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=87.27 E-value=0.69 Score=53.17 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=31.5
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
-.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 3799999999999999999999999999999864
No 330
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=87.01 E-value=0.77 Score=52.74 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 699999999999999999999999999999864
No 331
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.99 E-value=0.75 Score=53.03 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=31.3
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|||+++.
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 799999999999999999999999999999874
No 332
>PRK07846 mycothione reductase; Reviewed
Probab=86.88 E-value=0.74 Score=52.75 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=31.2
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 168 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 799999999999999999999999999999863
No 333
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.77 E-value=0.73 Score=49.37 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|.|||+|..|..+|..|+++|++|.+++...
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999999999999999999999999999754
No 334
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=86.74 E-value=0.69 Score=46.30 Aligned_cols=33 Identities=39% Similarity=0.441 Sum_probs=28.3
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-.|+|||+|..+.-+|..|++.|.+|.++=|.+
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 579999999999999999999999999998875
No 335
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.71 E-value=0.71 Score=49.52 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=29.3
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|.|||+|..|..+|..|+++|++|+++++.+
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 7899999999999999999999999999864
No 336
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=86.47 E-value=0.87 Score=51.95 Aligned_cols=34 Identities=41% Similarity=0.506 Sum_probs=32.0
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
-++|||+|..|+-.|..+++.|.+|.|||+++..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 4899999999999999999999999999999864
No 337
>PRK06370 mercuric reductase; Validated
Probab=86.46 E-value=0.84 Score=52.47 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=31.3
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.|+|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 799999999999999999999999999999874
No 338
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.44 E-value=0.77 Score=53.06 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|+|||+|..|+.+|..|++.|++|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 69999999999999999999999999999764
No 339
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.43 E-value=0.79 Score=49.88 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=29.3
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|.|||+|..|...|..++.+|++|++.|..+
T Consensus 10 VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 8899999999999999999999999999864
No 340
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=86.27 E-value=0.77 Score=52.63 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=31.2
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|||+++.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 699999999999999999999999999999863
No 341
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.20 E-value=0.92 Score=52.24 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=30.9
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 689999999999999999999999999999764
No 342
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.01 E-value=0.95 Score=45.80 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=30.1
Q ss_pred cccEEEECCCchHHHHHHHHHhCCC-eEEEEcCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKG 303 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG 303 (781)
..-|+|||+|..|+.+|..|++.|. +|.++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4579999999999999999999998 69999876
No 343
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.87 E-value=0.86 Score=48.87 Aligned_cols=32 Identities=47% Similarity=0.559 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|.|||+|..|.-.|..|+.+|++|+++|..+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48899999999999999999999999999875
No 344
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=85.87 E-value=0.96 Score=52.05 Aligned_cols=33 Identities=30% Similarity=0.305 Sum_probs=31.0
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 799999999999999999999999999998764
No 345
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=85.84 E-value=0.81 Score=50.25 Aligned_cols=32 Identities=34% Similarity=0.530 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|.|||+|..|+..|..|+++|++|.++++..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 48999999999999999999999999999853
No 346
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.67 E-value=0.88 Score=52.21 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=29.9
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
|+|||.|.+|..+|..|++.|++|.+.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 79999999999999999999999999998753
No 347
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=85.61 E-value=0.99 Score=51.86 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=31.2
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 699999999999999999999999999999874
No 348
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=85.56 E-value=0.88 Score=51.66 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=30.5
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|+|||+|..|+-+|..|++.|.+|.++++++
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 69999999999999999999999999999876
No 349
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=85.45 E-value=0.72 Score=51.43 Aligned_cols=28 Identities=43% Similarity=0.411 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 003990 281 SGGGLIAGVLAKAGYKVLVLEKGSYCAR 308 (781)
Q Consensus 281 ~~G~vaA~~LA~~G~kVlVLEkG~~~~~ 308 (781)
++|++||++|+++|++|+|+|+.+....
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GG 28 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGG 28 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCc
Confidence 4899999999999999999999986544
No 350
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=85.09 E-value=0.93 Score=51.72 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=31.0
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 689999999999999999999999999999863
No 351
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=84.77 E-value=1.2 Score=45.16 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=28.8
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEK 302 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEk 302 (781)
--|+|||+|-.|...|..|.+.|.+|+|+++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 3689999999999999999999999999975
No 352
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.73 E-value=1.3 Score=40.12 Aligned_cols=31 Identities=32% Similarity=0.562 Sum_probs=28.0
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|||||.|..|-.+|..|.+.+.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999778999999875
No 353
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=84.69 E-value=0.71 Score=47.76 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=27.9
Q ss_pred EEEECCCchHHHHHHHHHhC--CCeEEEEcCCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKA--GYKVLVLEKGSY 305 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~--G~kVlVLEkG~~ 305 (781)
+||||||++|-++|..||.. ..+||+|-+.+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 79999999999999999974 678999987653
No 354
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=84.56 E-value=1 Score=51.62 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=30.7
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.++|||+|..|+-+|..|++.|.+|.|+|+++
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 69999999999999999999999999999986
No 355
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.54 E-value=1.1 Score=48.16 Aligned_cols=32 Identities=41% Similarity=0.528 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|.|||+|..|..+|..|+++|++|++.++..
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999999999999754
No 356
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=84.42 E-value=1.2 Score=51.11 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=31.2
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 699999999999999999999999999999874
No 357
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=84.27 E-value=1.3 Score=41.69 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=29.4
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCe-EEEEcCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYK-VLVLEKG 303 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~k-VlVLEkG 303 (781)
.--++|||+|.+|-.+++.|++.|.+ |.|+-|-
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 34699999999999999999999976 9999875
No 358
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=84.11 E-value=1.2 Score=47.93 Aligned_cols=32 Identities=41% Similarity=0.541 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|.|||+|..|...|..|+.+|++|+++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 38899999999999999999999999999854
No 359
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=84.09 E-value=1.3 Score=42.90 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=27.8
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEc
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLE 301 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLE 301 (781)
--|+|||+|-.|.--|..|.+.|.+|.||.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 359999999999999999999999999994
No 360
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=84.02 E-value=1.3 Score=51.14 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 699999999999999999999999999999874
No 361
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.91 E-value=1.2 Score=48.34 Aligned_cols=31 Identities=35% Similarity=0.596 Sum_probs=28.8
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+.|+|+|+.|+..|++|+++|..|+++=|.+
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 7899999999999999999998899988775
No 362
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.91 E-value=1.2 Score=50.95 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=30.4
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-.|+|||+|..|..+|..|++.|++|.++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 358999999999999999999999999999864
No 363
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=83.83 E-value=1.3 Score=48.78 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=31.4
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
...-|+|||+|..|+.+|..|+++|. ++.++|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 34679999999999999999999997 899999854
No 364
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.75 E-value=1.3 Score=48.76 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=30.6
Q ss_pred cccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
..-|+|||.|..|+.+|..|+++|. ++.|+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4569999999999999999999997 899999864
No 365
>PRK04148 hypothetical protein; Provisional
Probab=83.73 E-value=1.1 Score=42.12 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=28.2
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-+++||.| .|..+|..|++.|++|+.+|..+
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 58999999 78788999999999999999876
No 366
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.72 E-value=1.3 Score=46.95 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=31.1
Q ss_pred CcccEEEECCCchHHHHHHHHHhCC-CeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAG-YKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G-~kVlVLEkG~ 304 (781)
...-|+|||.|..|+.+|..|++.| .++.|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3467999999999999999999999 6899999754
No 367
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=83.67 E-value=1.3 Score=41.62 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=29.3
Q ss_pred ccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
.-|+|||+|..|+.+|..|++.|. ++.|+|...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 358999999999999999999996 799999865
No 368
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=83.65 E-value=1.2 Score=51.13 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=30.9
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|||+++.
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 689999999999999999999999999999763
No 369
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.58 E-value=1.2 Score=50.22 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=28.7
Q ss_pred ccEEEECCCchHHHHHHHHHhC--C-CeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKA--G-YKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~--G-~kVlVLEkG~~ 305 (781)
++|+|||+|..|.++|.+|.+. . .+|.|+|+-..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 6899999999999999999975 2 23999998763
No 370
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.54 E-value=1.2 Score=48.57 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=28.5
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
+.|||+|..|+..|..|+++|++|.++.+.
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 789999999999999999999999999874
No 371
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.18 E-value=1.3 Score=48.34 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|.|||+|..|...|..|+++|++|.++++..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999999999999853
No 372
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=83.17 E-value=1.4 Score=50.34 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=31.0
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 200 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL 200 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 689999999999999999999999999999874
No 373
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=83.15 E-value=1.6 Score=41.40 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=28.5
Q ss_pred EEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
|+|||.|..|+.+|..|++.|. ++.++|...
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 7999999999999999999997 799998764
No 374
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=82.82 E-value=1.5 Score=50.02 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=31.4
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
-.|+|||+|..|+-+|..|++.|.+|.++++++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 3699999999999999999999999999998874
No 375
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=82.63 E-value=1.4 Score=48.63 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=29.3
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+.|||+|..|++.|.-||+.|+.|+.+|.-.
T Consensus 3 I~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred eEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 6899999999999999999999999999864
No 376
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=82.58 E-value=1.5 Score=52.51 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-.|..|++.|.+|.|||+++.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 689999999999999999999999999999874
No 377
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.40 E-value=1.5 Score=48.80 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHHhCC-CeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAG-YKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G-~kVlVLEkG~ 304 (781)
+++|||+|-.|.++|..||+.| .+|+|.+|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 6899999999999999999999 9999999974
No 378
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.33 E-value=1.4 Score=46.94 Aligned_cols=32 Identities=38% Similarity=0.555 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|.|||+|..|+..|..|+++|++|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 48999999999999999999999999998754
No 379
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=82.32 E-value=1.8 Score=49.93 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.++|+++.
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 211 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR 211 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 699999999999999999999999999999874
No 380
>PRK06116 glutathione reductase; Validated
Probab=82.22 E-value=1.6 Score=49.97 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=31.0
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.++++++.
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 699999999999999999999999999999863
No 381
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.08 E-value=1.8 Score=42.82 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=28.4
Q ss_pred EEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
|+|||.|..|+.+|..|++.|. ++.++|...
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 7999999999999999999997 599999864
No 382
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=82.02 E-value=1.8 Score=43.78 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=29.0
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
-++|+|.|-.|..+|..|.+.|.+|++.|+.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4999999999999999999999999998864
No 383
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.83 E-value=1.4 Score=51.37 Aligned_cols=34 Identities=35% Similarity=0.248 Sum_probs=31.4
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
-.|+|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 386 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE 386 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc
Confidence 3799999999999999999999999999998764
No 384
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=81.79 E-value=1.9 Score=49.29 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 192 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASL 192 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 689999999999999999999999999999864
No 385
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=81.59 E-value=1.9 Score=43.82 Aligned_cols=31 Identities=32% Similarity=0.374 Sum_probs=28.8
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
-|+|||+|..|..-|..|.+.|.+|+|+...
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5899999999999999999999999999753
No 386
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.41 E-value=1.7 Score=47.11 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=29.4
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|.|||+|..|+..|..|+++|++|+++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 48999999999999999999999999998754
No 387
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=81.28 E-value=2 Score=53.19 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=31.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
.++|||+|..|+-+|..|++.|.+|.|||+++..
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l 180 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 5899999999999999999999999999998754
No 388
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=81.26 E-value=1.6 Score=53.60 Aligned_cols=34 Identities=29% Similarity=0.249 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
.++|||+|..|+-+|..|++.|.+|.|||+++..
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 5899999999999999999999999999998754
No 389
>PRK13748 putative mercuric reductase; Provisional
Probab=81.25 E-value=1.9 Score=50.91 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.++|||+|..|+-+|..|++.|.+|.||++..
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 69999999999999999999999999999854
No 390
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=81.25 E-value=1.1 Score=40.01 Aligned_cols=32 Identities=34% Similarity=0.390 Sum_probs=28.9
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
-.|+|||+|..|..-+..|.+.|.+|+|+...
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 46999999999999999999999999999764
No 391
>PRK14694 putative mercuric reductase; Provisional
Probab=81.11 E-value=2.1 Score=49.24 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.++|||+|..|+-+|..|++.|.+|.|++++.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 69999999999999999999999999999754
No 392
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=81.00 E-value=1.5 Score=51.60 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=31.5
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
-.|+|||+|..|+-+|..|++.|.+|.++++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 3799999999999999999999999999999864
No 393
>PLN02507 glutathione reductase
Probab=80.95 E-value=1.7 Score=50.57 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=30.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|+|||+|..|+-+|..|++.|.+|.|+|+++
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 69999999999999999999999999999876
No 394
>PTZ00058 glutathione reductase; Provisional
Probab=80.92 E-value=1.8 Score=50.99 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=31.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
.|+|||+|..|+-+|..|++.|.+|.|+|+++.
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 699999999999999999999999999999874
No 395
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=80.85 E-value=1.6 Score=50.99 Aligned_cols=34 Identities=32% Similarity=0.219 Sum_probs=31.7
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYC 306 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~ 306 (781)
+|+|||+|..|+-+|..|+..|.+|.|+++++..
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 7999999999999999999999999999998743
No 396
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=80.73 E-value=1.8 Score=48.63 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=42.2
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCCCCCCCcccccCCchhhhhhhCCc
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSYCARSNLSLLEGKTMDQMYLAGGM 328 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~~~~~~~~~~~~~~~~~~y~~~~~ 328 (781)
.--|||||+|..|+-+|..|...+++|+++++-+...+.-|.......+...|++.+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgV 270 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGV 270 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCe
Confidence 3459999999999999999999999999999987654443333333344455655543
No 397
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=80.44 E-value=1.9 Score=46.82 Aligned_cols=32 Identities=34% Similarity=0.480 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|.|||+|..|+..|..|+++|++|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48999999999999999999999999999864
No 398
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=80.24 E-value=2.2 Score=43.14 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=30.9
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
.+.-|+|||.|..|+.+|..|+..|. ++.++|...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 34679999999999999999999996 899999864
No 399
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=80.17 E-value=2 Score=46.49 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=28.2
Q ss_pred cEEEECCCchHHHHHHHHHhCCC-eEEEEcCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKG 303 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG 303 (781)
-|.|||+|..|+.+|+.|+..|+ +|+++|.-
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 37899999999999999999886 89999983
No 400
>PLN02546 glutathione reductase
Probab=80.14 E-value=1.9 Score=50.83 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=30.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|+|||+|..|+-+|..|++.|.+|.|+|+++
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 79999999999999999999999999999876
No 401
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=79.90 E-value=2.1 Score=46.01 Aligned_cols=31 Identities=39% Similarity=0.499 Sum_probs=29.2
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|.|||+|..|..+|..|+.+|++|.+.|+..
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8999999999999999999999999999754
No 402
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=79.72 E-value=2 Score=48.65 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|.|||.|..|+..|..|+++|++|+++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 37899999999999999999999999999864
No 403
>PRK14727 putative mercuric reductase; Provisional
Probab=79.56 E-value=2.1 Score=49.55 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=29.4
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
.++|||+|..|+-+|..|++.|.+|.|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 6999999999999999999999999999975
No 404
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=79.54 E-value=2 Score=48.66 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|.|||.|..|+..|..|+++|++|+++++.+
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 38999999999999999999999999999754
No 405
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=79.15 E-value=2.1 Score=47.30 Aligned_cols=32 Identities=25% Similarity=0.170 Sum_probs=29.3
Q ss_pred cEEEECCCchHHHHHHHHHhCCCe-EEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYK-VLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~k-VlVLEkG~ 304 (781)
.|+|||+|..|+-+|..|++.|.+ |.|+++..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 699999999999999999999987 99999764
No 406
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=79.13 E-value=2.1 Score=49.00 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=30.3
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|||||+|..|+-+|..|++.|.+|.|+++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999999999999999999999999999875
No 407
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=79.08 E-value=2.1 Score=49.66 Aligned_cols=32 Identities=38% Similarity=0.517 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|.|||+|..|.-+|..|+++|++|.|.|+..
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38999999999999999999999999999865
No 408
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=78.89 E-value=2.6 Score=41.36 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=29.9
Q ss_pred CcccEEEECCCc-hHHHHHHHHHhCCCeEEEEcCC
Q 003990 270 IKCDAVVVGSGS-GGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 270 ~~~DVIVVGsG~-~G~vaA~~LA~~G~kVlVLEkG 303 (781)
....++|||+|- +|..+|..|.+.|.+|.|+.+-
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 456899999996 6988999999999999999874
No 409
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=78.78 E-value=2.7 Score=41.19 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=28.9
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.-|+|+|+|.+|.-||..|...|.+|.++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 679999999999999999999999999999754
No 410
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=78.55 E-value=3 Score=46.50 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=30.7
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
..+|+|||+|..|..+|..|...|.+|.++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3569999999999999999999999999999853
No 411
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=78.00 E-value=2.8 Score=43.74 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=29.3
Q ss_pred CcccEEEECCCchHHHHHHHHHhCC-----------CeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAG-----------YKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G-----------~kVlVLEkG~ 304 (781)
....|+|||+|..|+.++..||+.| .++.|+|...
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 4578999999999999999999974 3788888653
No 412
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=77.98 E-value=2.7 Score=42.66 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=32.8
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+...--|-|||+|..|+-+|...|.+|+.|.|+++..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 3445579999999999999999999999999999875
No 413
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=77.67 E-value=2.8 Score=44.88 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=29.6
Q ss_pred ccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
-.|+|||+|.+|..+|+.|++.|. +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 469999999999999999999996 799998853
No 414
>PRK08328 hypothetical protein; Provisional
Probab=77.65 E-value=2.8 Score=43.43 Aligned_cols=34 Identities=35% Similarity=0.561 Sum_probs=29.4
Q ss_pred cccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
..-|+|||.|..|+.+|..|+..|. ++.|+|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4569999999999999999999995 688887654
No 415
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=77.59 E-value=2.8 Score=48.56 Aligned_cols=31 Identities=32% Similarity=0.378 Sum_probs=29.2
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
.++|||+|..|+-+|..|++.|.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 5999999999999999999999999999974
No 416
>PTZ00052 thioredoxin reductase; Provisional
Probab=77.52 E-value=2.4 Score=49.27 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=29.3
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
.++|||+|..|+-+|..|++.|.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 6999999999999999999999999999873
No 417
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=77.52 E-value=2.4 Score=45.63 Aligned_cols=31 Identities=39% Similarity=0.596 Sum_probs=28.9
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|-|||+|..|.-.|..+|..|++|++.|...
T Consensus 6 v~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred EEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 7899999999999999999889999999863
No 418
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.47 E-value=3 Score=45.15 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|.|||+|..|...|..|+++|++|.+..+..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 48999999999999999999999999998753
No 419
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=77.36 E-value=2.6 Score=43.52 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=29.4
Q ss_pred ccEEEECCCchHHHHHHHHHhCCC---eEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGY---KVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~---kVlVLEkG~ 304 (781)
--|+|+|+|.+|..+|..|.+.|. +|.|+++-.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 369999999999999999999996 499999864
No 420
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=77.35 E-value=2.9 Score=42.87 Aligned_cols=31 Identities=35% Similarity=0.479 Sum_probs=28.2
Q ss_pred EEEEC-CCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVG-SGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVG-sG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+.||| +|..|..+|..|+++|++|.+..+..
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 78997 79999999999999999999997754
No 421
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=77.25 E-value=2.4 Score=51.45 Aligned_cols=32 Identities=34% Similarity=0.408 Sum_probs=29.9
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|.|||+|..|.-+|..+|.+|++|+++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999999999999999999999999999864
No 422
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=76.91 E-value=2.5 Score=51.26 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=30.1
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|.|||+|..|.-+|..+|.+|++|+++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 49999999999999999999999999999864
No 423
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=76.82 E-value=3.2 Score=43.27 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=29.9
Q ss_pred cccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
...|+|||.|..|+.+|..|+..|. ++.++|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 4679999999999999999999994 788888764
No 424
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=76.67 E-value=2.8 Score=48.79 Aligned_cols=31 Identities=39% Similarity=0.552 Sum_probs=29.5
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|-|||+|..|.-+|..|+.+|+.|.|.|+..
T Consensus 10 V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 8899999999999999999999999999865
No 425
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=76.52 E-value=3 Score=47.32 Aligned_cols=33 Identities=48% Similarity=0.519 Sum_probs=29.5
Q ss_pred cEEEECCCchHHHHHHHHHh--------------CCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAK--------------AGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~--------------~G~kVlVLEkG~~ 305 (781)
.++|||+|..|.-+|..|++ .+.+|.|+|+++.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 79999999999999999986 4789999999863
No 426
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=76.50 E-value=3.2 Score=42.90 Aligned_cols=34 Identities=32% Similarity=0.440 Sum_probs=29.8
Q ss_pred cccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
..-|+|||.|..|+.+|..|+..|. ++.|+|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4579999999999999999999995 788888654
No 427
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=76.39 E-value=3.2 Score=42.43 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=30.6
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
...-|+|||.|..|+.+|..|++.|. ++.++|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 34679999999999999999999996 599998764
No 428
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.11 E-value=3.1 Score=45.08 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=29.0
Q ss_pred cEEEECCCchHHHHHHHHHhCC--CeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAG--YKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G--~kVlVLEkG~ 304 (781)
.|.|||+|..|+++|+.|+..| ..|+++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 4899999999999999999999 5899999864
No 429
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=76.09 E-value=3 Score=44.72 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=28.2
Q ss_pred cEEEECCCchHHHHHHHHHhCCCe-EEEEcCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYK-VLVLEKG 303 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~k-VlVLEkG 303 (781)
-++|+|+|.+|.++|+.|++.|.+ |.|+.|.
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 589999999999999999999986 9999875
No 430
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=76.01 E-value=2.8 Score=44.66 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=28.8
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|.|||.|..|...|..|+++|++|+++++..
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 7899999999999999999999999998753
No 431
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=75.99 E-value=3.4 Score=43.25 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=30.8
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
....|+|||.|..|+.+|..|+..|. ++.|+|...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45789999999999999999999995 788988764
No 432
>PRK12831 putative oxidoreductase; Provisional
Probab=75.52 E-value=3.1 Score=47.88 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=30.4
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
=.|+|||+|..|+-+|..|++.|.+|.|+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 379999999999999999999999999998764
No 433
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=75.27 E-value=3.6 Score=41.57 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=30.0
Q ss_pred cccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
+.-|+|||.|..|+.+|..|+..|. ++.++|...
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4679999999999999999999995 599998764
No 434
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=75.08 E-value=3.4 Score=46.50 Aligned_cols=33 Identities=36% Similarity=0.329 Sum_probs=30.2
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-.|+|+|.|..|..+|..|...|.+|+|+|..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 469999999999999999999999999999864
No 435
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.02 E-value=3.3 Score=47.34 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=29.5
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|+|+|+|..|..+|..|++.|.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 37999999999999999999999999999764
No 436
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=75.01 E-value=3.2 Score=48.22 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|.|||+|..|...|..|+++|++|+|.++.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38899999999999999999999999999854
No 437
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=74.89 E-value=3.6 Score=47.67 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=28.5
Q ss_pred cEEEECCCchHHHHHHHHHh---CCCeEEEEcCCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAK---AGYKVLVLEKGSY 305 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~---~G~kVlVLEkG~~ 305 (781)
.++|||+|..|+-+|..++. .|.+|.|||+++.
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~ 224 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM 224 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc
Confidence 69999999999999976654 4999999999874
No 438
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=74.80 E-value=3.9 Score=43.85 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=28.4
Q ss_pred EEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
|+|||+|.-|+.+|..|+..|. ++.++|.+.
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 7999999999999999999995 799998775
No 439
>PRK08223 hypothetical protein; Validated
Probab=74.03 E-value=3.8 Score=43.76 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=30.3
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
...-|+|||.|..|+.+|..||.+|. ++.++|...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 35679999999999999999999995 788888654
No 440
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=74.02 E-value=3.6 Score=43.59 Aligned_cols=30 Identities=33% Similarity=0.624 Sum_probs=26.6
Q ss_pred EEEECCCchHHHHHHHHHhCCC-eEEEEcCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGY-KVLVLEKG 303 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG 303 (781)
|||||+|..|+.++.-|.+.|. |+.++|=.
T Consensus 77 VVVVG~GgVGSwv~nmL~RSG~qKi~iVDfd 107 (430)
T KOG2018|consen 77 VVVVGAGGVGSWVANMLLRSGVQKIRIVDFD 107 (430)
T ss_pred EEEEecCchhHHHHHHHHHhcCceEEEechh
Confidence 8899999999999999999995 78888743
No 441
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=73.66 E-value=3.8 Score=48.22 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=30.6
Q ss_pred cccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
..-|+|||+|.-|+.+|..|+..|. +++++|.+.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 5679999999999999999999995 789998875
No 442
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=73.64 E-value=3.4 Score=50.30 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=30.0
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|.|||+|..|.-+|..++.+|++|+++|...
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 48999999999999999999999999999865
No 443
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=73.48 E-value=4.2 Score=41.00 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=29.8
Q ss_pred cccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
..-|+|||.|..|+.+|..|+.+|. ++.++|-..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4569999999999999999999996 688888764
No 444
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=73.47 E-value=3.7 Score=47.22 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=28.7
Q ss_pred cEEEECCCchHHHHHHHHHhC--CCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKA--GYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~--G~kVlVLEkG~ 304 (781)
.|.|||.|..|+++|..||+. |++|+.+|...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 389999999999999999998 58899999764
No 445
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=73.08 E-value=4.2 Score=42.23 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=27.6
Q ss_pred EEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
|+|||+|..|+.++..|+..|. ++.|+|...
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 7999999999999999999995 788888653
No 446
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=72.88 E-value=4.2 Score=44.03 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=28.4
Q ss_pred EEEECCCchHHHHHHHHHhCC--CeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAG--YKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G--~kVlVLEkG~ 304 (781)
|.|||+|..|.++|+.|+..| ..|.++++..
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 789999999999999999998 5799999854
No 447
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=72.83 E-value=3.6 Score=44.34 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=28.2
Q ss_pred EEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
|.|||+|..|..+|..|+..|+ .|+++|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999876 999999864
No 448
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=72.78 E-value=4.1 Score=46.12 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=28.3
Q ss_pred EEEECCCchHHHHHHHHHhCCC------eEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGY------KVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~------kVlVLEkG~ 304 (781)
|+|||+|..||-++..||..|. ++.|+|...
T Consensus 2 VlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDN 38 (435)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence 7999999999999999999998 888988754
No 449
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=72.20 E-value=4.4 Score=40.99 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=27.5
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
+.|+|.|-.|...|.+|+++|+.|.+--+.
T Consensus 4 ~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred EEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 689999999999999999999999998444
No 450
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=71.87 E-value=4.3 Score=47.46 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=28.8
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
-|+|+|+|.+|..+|+.|++.|.+|+++.|-
T Consensus 381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5899999999999999999999999999774
No 451
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=71.84 E-value=2.4 Score=44.80 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=25.0
Q ss_pred ccEEEECCCchHHHHHHHHHhCC-------CeEEEEcC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAG-------YKVLVLEK 302 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G-------~kVlVLEk 302 (781)
-+++|||+|..|+++|..+.+.+ .+|.|++-
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 58999999999999998877743 56777753
No 452
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=71.62 E-value=4.6 Score=43.34 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=30.3
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
--++|||.|..|..+|..|...|.+|.+.++..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468999999999999999999999999999854
No 453
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=71.52 E-value=4.4 Score=46.36 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=31.6
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~~ 305 (781)
=.|+|||+|..|.-+|..|++.|.+|.++=|.+.
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 4799999999999999999999999999998874
No 454
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=71.24 E-value=6.7 Score=33.62 Aligned_cols=31 Identities=39% Similarity=0.547 Sum_probs=28.3
Q ss_pred ccEEEECCCchHHHHHHHHHhC-CCeEEEEcC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKA-GYKVLVLEK 302 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~-G~kVlVLEk 302 (781)
-.++|+|+|..|..+|..|.+. +.+|.+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4699999999999999999998 688999988
No 455
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=71.20 E-value=5.3 Score=38.79 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=27.4
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|-|||-|..|...|.+|+++|++|.+.++.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 47899999999999999999999999998764
No 456
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=71.06 E-value=4.6 Score=43.75 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=27.9
Q ss_pred EEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
|+|||+|..|+-+|..|+..|. ++.|+|...
T Consensus 2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 7999999999999999999995 788888754
No 457
>PRK06223 malate dehydrogenase; Reviewed
Probab=70.92 E-value=5 Score=43.38 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=28.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
-|.|||+|..|..+|..|+..|+ .|.++|.-.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 58999999999999999999876 999999843
No 458
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=70.79 E-value=5.2 Score=42.89 Aligned_cols=31 Identities=26% Similarity=0.497 Sum_probs=27.5
Q ss_pred EEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
|+|||+|..|+-+|..|+..|. ++.|+|-..
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 7999999999999999999995 688888653
No 459
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=70.72 E-value=5.1 Score=42.47 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=29.2
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.++|+|+|..|..+|..|++.|.+|.|+.|..
T Consensus 119 ~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 58999999999999999999999999998753
No 460
>PRK08017 oxidoreductase; Provisional
Probab=70.63 E-value=5.3 Score=41.35 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=28.3
Q ss_pred EEEECC-CchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGS-GSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGs-G~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|+|+|+ |..|..+|..|+++|.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 899998 9999999999999999999997753
No 461
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=70.51 E-value=5.4 Score=41.32 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=29.8
Q ss_pred cccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
..-|+|||.|..|+.+|..|++.|. +++|+|...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 3569999999999999999999996 888888754
No 462
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.41 E-value=6.6 Score=43.48 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=34.3
Q ss_pred CCCcccEEEECCCchHHHHHHHHHhCC-CeEEEEcCCCCC
Q 003990 268 LVIKCDAVVVGSGSGGGLIAGVLAKAG-YKVLVLEKGSYC 306 (781)
Q Consensus 268 ~~~~~DVIVVGsG~~G~vaA~~LA~~G-~kVlVLEkG~~~ 306 (781)
+...+|+|.||-|+.-+..|..|.+.+ ++++.|||-+.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 346699999999999999999999974 899999998754
No 463
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=70.32 E-value=4.6 Score=45.29 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=27.3
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|.|||.|..|+.+|..||. |++|+++|...
T Consensus 3 I~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 7899999999999988885 99999999865
No 464
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=70.09 E-value=5 Score=37.88 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=26.9
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
++|+|+|..+..+|.-++.-|++|+|+|--+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999764
No 465
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=69.93 E-value=5.2 Score=38.84 Aligned_cols=33 Identities=36% Similarity=0.365 Sum_probs=26.9
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
--++|+|-|-.|-.+|.+|...|.+|.|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 459999999999999999999999999999865
No 466
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=69.92 E-value=5.8 Score=43.24 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=30.1
Q ss_pred ccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGSY 305 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~~ 305 (781)
.-|.|||+|..|..+|+.|+..|+ +|+|+|.-+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 468999999999999999999996 8999998653
No 467
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=69.66 E-value=5.2 Score=45.90 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=29.9
Q ss_pred ccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
=.|+|||+|..|+-+|..|++.|. +|.|+++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 379999999999999999999997 899999854
No 468
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=69.64 E-value=4.9 Score=43.04 Aligned_cols=31 Identities=35% Similarity=0.454 Sum_probs=28.7
Q ss_pred EEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|-|||.|..|...|..|++.|++|.+.++..
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 6799999999999999999999999998764
No 469
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=69.55 E-value=6.8 Score=34.04 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=27.7
Q ss_pred EEEECCCchHHHHHHHHHhCC---CeEEEE-cCCC
Q 003990 274 AVVVGSGSGGGLIAGVLAKAG---YKVLVL-EKGS 304 (781)
Q Consensus 274 VIVVGsG~~G~vaA~~LA~~G---~kVlVL-EkG~ 304 (781)
+.|||+|-.|...+..|.+.| .+|+++ ++.+
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 578999999999999999999 899976 7764
No 470
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=69.44 E-value=6.3 Score=39.42 Aligned_cols=32 Identities=34% Similarity=0.515 Sum_probs=28.6
Q ss_pred ccEEEECC-CchHHHHHHHHHhCCCeEEEEcCC
Q 003990 272 CDAVVVGS-GSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 272 ~DVIVVGs-G~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
-.++|+|+ |..|..+|..|++.|.+|.++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46899996 999999999999999999999764
No 471
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=68.96 E-value=5.8 Score=44.32 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=30.1
Q ss_pred cccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
..-|+|||.|..|+.+|..|+..|. ++.+++...
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4569999999999999999999996 799998764
No 472
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=68.89 E-value=4.6 Score=43.06 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=32.1
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
...+|+|||+|..|.-+|.-+..-|.+|.+||...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 55789999999999999999999999999999874
No 473
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.89 E-value=5.3 Score=45.64 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=29.8
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|+|||+|..|..+|..|.+.|++|+++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 48999999999999999999999999999854
No 474
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=68.76 E-value=4.9 Score=46.21 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=30.6
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
=.|+|||+|..|+=+|..|++.+.+|.++.++.
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 379999999999999999999999999999865
No 475
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=68.74 E-value=5.1 Score=48.70 Aligned_cols=32 Identities=41% Similarity=0.432 Sum_probs=29.2
Q ss_pred cEEEECCCchHHHHHHHHH-hCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLA-KAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA-~~G~kVlVLEkG~ 304 (781)
-|.|||+|..|.-+|..+| .+|+.|+++|...
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 4899999999999999999 8899999999854
No 476
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=68.47 E-value=6 Score=44.45 Aligned_cols=33 Identities=33% Similarity=0.268 Sum_probs=30.4
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
--|+|||.|..|..+|..|...|.+|+|+|..+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 469999999999999999999999999999765
No 477
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=68.13 E-value=5.8 Score=44.55 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=30.5
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
.+.-|+|||.|..|+.+|..|+.+|. ++.|+|...
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 35679999999999999999999995 788888754
No 478
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=67.99 E-value=5.5 Score=48.28 Aligned_cols=32 Identities=38% Similarity=0.468 Sum_probs=29.0
Q ss_pred cEEEECCCchHHHHHHHHH-hCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLA-KAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA-~~G~kVlVLEkG~ 304 (781)
-|.|||+|..|.-.|..+| .+|+.|+++|..+
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4899999999999999998 5899999999764
No 479
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=67.96 E-value=6.2 Score=42.04 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=29.6
Q ss_pred ccEEEECCCchHHHHHHHHHhCC-CeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAG-YKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G-~kVlVLEkG~ 304 (781)
-.|+|+|+|.+|..+|..|++.| .+|.|+.|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 35899999999999999999999 7999998853
No 480
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=67.66 E-value=5.3 Score=45.92 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=30.6
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
++|-|||.|..|...|.+|+++|++|.|.++-.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~ 34 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY 34 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 578999999999999999999999999998854
No 481
>PRK06153 hypothetical protein; Provisional
Probab=67.64 E-value=6.3 Score=43.72 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=30.2
Q ss_pred cccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
..-|+|||.|..|+.+|..||+.|. ++.|+|...
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 4679999999999999999999995 799998754
No 482
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.50 E-value=6.9 Score=41.36 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=27.2
Q ss_pred cEEEECCC---chHHHHHHHHHhCCCeEEEEcCC
Q 003990 273 DAVVVGSG---SGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 273 DVIVVGsG---~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
=+||.|++ ..|..+|.+|+++|.+|++..+.
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 37899987 68999999999999999998764
No 483
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=67.31 E-value=6.9 Score=41.86 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=28.3
Q ss_pred ccEEEECCCchHHHHHHHHHhCCC-eEEEEcCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKG 303 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG 303 (781)
--|+|+|+|.+|-++|+.|++.|. +|.|+.|-
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 358999999999999999999995 78899874
No 484
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=67.17 E-value=6.2 Score=43.93 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=30.8
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
...-|+|||.|..|+.+|..|+..|. ++.++|...
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 34679999999999999999999995 899998764
No 485
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=67.07 E-value=6.7 Score=41.70 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=28.8
Q ss_pred cEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
.++|+|+|.++-++++.|++.|. +|.|+.|-.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 68999999999999999999996 599998854
No 486
>PRK06057 short chain dehydrogenase; Provisional
Probab=67.03 E-value=7 Score=40.60 Aligned_cols=32 Identities=31% Similarity=0.261 Sum_probs=28.5
Q ss_pred cEEEECC-CchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGS-GSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGs-G~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|+|+|+ |..|..+|.+|++.|++|+++.+..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4899998 8899999999999999999998753
No 487
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=66.89 E-value=6.3 Score=43.99 Aligned_cols=31 Identities=42% Similarity=0.698 Sum_probs=28.7
Q ss_pred cEEEEC-CCchHHHHHHHHHhCCCeEEEEcCC
Q 003990 273 DAVVVG-SGSGGGLIAGVLAKAGYKVLVLEKG 303 (781)
Q Consensus 273 DVIVVG-sG~~G~vaA~~LA~~G~kVlVLEkG 303 (781)
-|.||| .|..|...|..|.++|+.|.+.++.
T Consensus 100 ~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 100 PVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred eEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 489999 8999999999999999999999873
No 488
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=66.88 E-value=7 Score=44.21 Aligned_cols=33 Identities=33% Similarity=0.285 Sum_probs=30.4
Q ss_pred ccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
--|+|||.|..|..+|..|...|.+|+|.|..+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 469999999999999999999999999999865
No 489
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=66.51 E-value=6.9 Score=41.83 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=28.6
Q ss_pred ccEEEECCCchHHHHHHHHHhCCC-eEEEEcCC
Q 003990 272 CDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKG 303 (781)
Q Consensus 272 ~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG 303 (781)
..|+|||+|.+|-.+|+.|++.|. +|.|+.|-
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 369999999999999999999995 69999774
No 490
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=66.47 E-value=7.5 Score=41.48 Aligned_cols=32 Identities=31% Similarity=0.477 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|+|||.|..|...|..|.++|+.|-++.+..
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~ 36 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGRDR 36 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEeecC
Confidence 48999999999999999999999999998865
No 491
>PRK07831 short chain dehydrogenase; Provisional
Probab=66.33 E-value=7.3 Score=40.67 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=27.8
Q ss_pred cEEEECC-C-chHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGS-G-SGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGs-G-~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-++|.|+ | ..|..+|..|++.|.+|+++++..
T Consensus 19 ~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~ 52 (262)
T PRK07831 19 VVLVTAAAGTGIGSATARRALEEGARVVISDIHE 52 (262)
T ss_pred EEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4899997 5 689999999999999999988754
No 492
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=66.19 E-value=7.4 Score=45.91 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=31.6
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
+-.+||+|.|..|-.+|.+|.+.|++|+++|+.+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence 4679999999999999999999999999999865
No 493
>PRK07326 short chain dehydrogenase; Provisional
Probab=66.08 E-value=7.8 Score=39.58 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=27.6
Q ss_pred cEEEECC-CchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGS-GSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGs-G~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
=++|+|+ |..|..+|.+|++.|.+|+++.+.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 3788885 8999999999999999999998753
No 494
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=66.01 E-value=7.3 Score=41.99 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=30.7
Q ss_pred cccEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
..-|+|||.|..|..+|..|...|.+|.+.++-.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3569999999999999999999999999998864
No 495
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=65.85 E-value=6.9 Score=43.34 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=30.1
Q ss_pred cccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 271 KCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 271 ~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
+.-|+|||.|..|+.+|..|+..|. ++.|+|...
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4679999999999999999999995 788888764
No 496
>PRK07411 hypothetical protein; Validated
Probab=65.80 E-value=7 Score=43.87 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=30.6
Q ss_pred CcccEEEECCCchHHHHHHHHHhCCC-eEEEEcCCC
Q 003990 270 IKCDAVVVGSGSGGGLIAGVLAKAGY-KVLVLEKGS 304 (781)
Q Consensus 270 ~~~DVIVVGsG~~G~vaA~~LA~~G~-kVlVLEkG~ 304 (781)
...-|+|||.|..|+.+|..|+.+|. ++.|+|...
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35679999999999999999999995 788888754
No 497
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=65.69 E-value=7.1 Score=42.02 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=29.6
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
.|-|||.|..|...|..|+++|++|.+.++.+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999998864
No 498
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.52 E-value=7.5 Score=44.39 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=29.7
Q ss_pred cEEEECCCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGSGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGsG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-++|+|.|..|..+|..|++.|.+|.+.|...
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 48999999999999999999999999999765
No 499
>PRK07774 short chain dehydrogenase; Provisional
Probab=65.52 E-value=7.9 Score=39.91 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=28.6
Q ss_pred cEEEECC-CchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 273 DAVVVGS-GSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 273 DVIVVGs-G~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
-|+|+|+ |..|..+|..|++.|.+|+++.+..
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~ 40 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAREGASVVVADINA 40 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3899997 8999999999999999999998753
No 500
>PRK08177 short chain dehydrogenase; Provisional
Probab=65.35 E-value=8.5 Score=39.15 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=27.3
Q ss_pred EEEEC-CCchHHHHHHHHHhCCCeEEEEcCCC
Q 003990 274 AVVVG-SGSGGGLIAGVLAKAGYKVLVLEKGS 304 (781)
Q Consensus 274 VIVVG-sG~~G~vaA~~LA~~G~kVlVLEkG~ 304 (781)
|+|+| +|..|..+|.+|++.|.+|+++.+..
T Consensus 4 vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 67888 67788899999999999999999865
Done!