Query 003991
Match_columns 781
No_of_seqs 1159 out of 4623
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 15:36:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 8.3E-45 1.8E-49 365.0 32.0 287 369-655 206-492 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.9E-43 4E-48 355.3 32.2 409 42-701 88-497 (966)
3 KOG0547 Translocase of outer m 100.0 3.1E-41 6.7E-46 331.5 32.7 436 33-654 112-572 (606)
4 TIGR00990 3a0801s09 mitochondr 100.0 8.2E-38 1.8E-42 353.5 55.3 439 35-654 126-577 (615)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-33 4.5E-38 337.9 55.6 310 369-687 589-898 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-32 2.2E-37 331.9 57.2 320 371-697 387-706 (899)
7 PRK11447 cellulose synthase su 100.0 5.6E-32 1.2E-36 325.4 54.4 316 369-691 291-702 (1157)
8 PRK11447 cellulose synthase su 100.0 4.1E-32 8.8E-37 326.6 52.5 306 385-697 273-674 (1157)
9 KOG0548 Molecular co-chaperone 100.0 1.9E-33 4.1E-38 281.9 30.8 476 36-644 2-485 (539)
10 TIGR00990 3a0801s09 mitochondr 100.0 2.3E-31 5E-36 301.0 49.0 262 428-696 307-578 (615)
11 PRK15174 Vi polysaccharide exp 100.0 5.3E-29 1.2E-33 280.2 49.0 284 381-665 110-398 (656)
12 PRK09782 bacteriophage N4 rece 100.0 8.4E-28 1.8E-32 275.5 53.9 238 448-696 476-713 (987)
13 PRK15174 Vi polysaccharide exp 100.0 1.9E-28 4.1E-33 275.8 47.1 334 41-619 47-386 (656)
14 KOG2002 TPR-containing nuclear 100.0 2.6E-27 5.7E-32 252.4 44.6 463 42-672 276-769 (1018)
15 PRK09782 bacteriophage N4 rece 100.0 2.8E-27 6.1E-32 271.2 44.8 275 407-692 467-743 (987)
16 PRK10049 pgaA outer membrane p 100.0 3.9E-27 8.4E-32 271.1 44.6 396 47-696 26-463 (765)
17 KOG2002 TPR-containing nuclear 100.0 3.5E-26 7.6E-31 243.9 46.1 477 52-703 146-653 (1018)
18 KOG1126 DNA-binding cell divis 100.0 5.1E-27 1.1E-31 241.8 27.1 300 387-693 325-624 (638)
19 KOG0547 Translocase of outer m 100.0 1.1E-25 2.4E-30 222.3 34.5 260 430-696 294-573 (606)
20 PRK10049 pgaA outer membrane p 100.0 5.2E-25 1.1E-29 253.5 44.5 197 460-656 248-464 (765)
21 KOG1126 DNA-binding cell divis 100.0 2.2E-26 4.7E-31 237.2 25.2 285 370-654 342-626 (638)
22 KOG1173 Anaphase-promoting com 99.9 1.7E-24 3.6E-29 218.4 37.2 280 377-656 240-526 (611)
23 KOG0624 dsRNA-activated protei 99.9 1.3E-23 2.8E-28 198.6 33.7 331 30-589 30-379 (504)
24 PRK11788 tetratricopeptide rep 99.9 1.3E-23 2.8E-28 226.2 36.7 309 380-694 34-356 (389)
25 KOG2003 TPR repeat-containing 99.9 3.9E-23 8.4E-28 201.9 33.1 283 377-659 415-700 (840)
26 KOG1155 Anaphase-promoting com 99.9 2.4E-22 5.2E-27 197.7 35.8 303 387-696 233-543 (559)
27 KOG1173 Anaphase-promoting com 99.9 5E-23 1.1E-27 207.8 28.9 260 369-628 266-532 (611)
28 KOG0495 HAT repeat protein [RN 99.9 1.1E-20 2.3E-25 193.2 43.8 323 377-700 512-857 (913)
29 PRK14574 hmsH outer membrane p 99.9 1.5E-20 3.2E-25 211.8 49.2 441 36-696 34-520 (822)
30 KOG0548 Molecular co-chaperone 99.9 3.5E-22 7.7E-27 201.2 31.7 304 385-696 6-462 (539)
31 KOG1155 Anaphase-promoting com 99.9 2.1E-22 4.6E-27 198.2 28.7 278 377-654 258-542 (559)
32 KOG0624 dsRNA-activated protei 99.9 4E-22 8.6E-27 188.6 29.0 314 376-696 33-377 (504)
33 PRK11788 tetratricopeptide rep 99.9 3.8E-21 8.2E-26 207.0 36.7 280 367-647 55-346 (389)
34 KOG2003 TPR repeat-containing 99.9 4E-21 8.8E-26 187.9 32.8 270 416-692 420-692 (840)
35 KOG2076 RNA polymerase III tra 99.9 2E-20 4.3E-25 199.2 38.9 301 378-678 204-544 (895)
36 PF13429 TPR_15: Tetratricopep 99.9 7.9E-23 1.7E-27 208.2 12.7 264 383-648 10-277 (280)
37 KOG1174 Anaphase-promoting com 99.9 5.1E-19 1.1E-23 171.8 37.9 294 360-654 211-506 (564)
38 KOG0495 HAT repeat protein [RN 99.9 5.6E-18 1.2E-22 173.5 46.6 318 370-699 573-890 (913)
39 KOG2076 RNA polymerase III tra 99.9 9.9E-20 2.1E-24 193.9 35.3 303 381-690 139-513 (895)
40 PRK12370 invasion protein regu 99.9 1.3E-19 2.7E-24 201.3 34.6 265 383-650 260-537 (553)
41 PRK14574 hmsH outer membrane p 99.9 1.4E-17 3E-22 188.0 46.4 399 46-656 78-521 (822)
42 PF13429 TPR_15: Tetratricopep 99.9 1.8E-21 4E-26 198.1 13.7 267 410-687 5-275 (280)
43 TIGR00540 hemY_coli hemY prote 99.9 2.1E-18 4.5E-23 184.7 36.8 298 381-686 84-396 (409)
44 KOG1129 TPR repeat-containing 99.9 7.4E-19 1.6E-23 165.6 28.8 269 391-660 189-470 (478)
45 KOG4162 Predicted calmodulin-b 99.9 2.7E-18 5.9E-23 180.0 36.1 289 366-654 463-789 (799)
46 PRK12370 invasion protein regu 99.9 8.3E-19 1.8E-23 194.8 33.4 229 418-648 261-502 (553)
47 KOG0550 Molecular chaperone (D 99.9 2.4E-19 5.2E-24 174.5 25.2 301 34-582 47-352 (486)
48 KOG1125 TPR repeat-containing 99.8 9.2E-20 2E-24 185.5 21.3 255 384-638 288-561 (579)
49 KOG1174 Anaphase-promoting com 99.8 2.2E-18 4.8E-23 167.4 29.5 304 385-696 200-507 (564)
50 KOG1129 TPR repeat-containing 99.8 2.4E-19 5.2E-24 168.8 21.1 245 383-628 225-472 (478)
51 PRK10747 putative protoheme IX 99.8 1.4E-17 3.1E-22 177.2 36.8 297 381-689 84-390 (398)
52 PRK11189 lipoprotein NlpI; Pro 99.8 2.6E-18 5.7E-23 174.9 28.2 230 395-629 40-281 (296)
53 TIGR00540 hemY_coli hemY prote 99.8 1.8E-17 4E-22 177.4 35.4 278 370-648 107-399 (409)
54 KOG1125 TPR repeat-containing 99.8 3.1E-19 6.6E-24 181.7 18.8 233 419-651 289-530 (579)
55 PRK11189 lipoprotein NlpI; Pro 99.8 4.2E-18 9.1E-23 173.4 27.2 224 427-654 38-272 (296)
56 KOG0550 Molecular chaperone (D 99.8 1.5E-18 3.2E-23 169.0 20.4 271 381-651 49-353 (486)
57 PLN03081 pentatricopeptide (PP 99.8 2.2E-16 4.8E-21 181.8 42.3 293 380-687 258-555 (697)
58 KOG4162 Predicted calmodulin-b 99.8 5.8E-16 1.3E-20 162.7 40.7 292 396-694 459-788 (799)
59 KOG1127 TPR repeat-containing 99.8 9.8E-18 2.1E-22 179.4 27.6 287 398-687 385-698 (1238)
60 COG3063 PilF Tfp pilus assembl 99.8 1.5E-17 3.3E-22 150.4 24.7 205 450-654 36-242 (250)
61 COG3063 PilF Tfp pilus assembl 99.8 2.2E-17 4.7E-22 149.4 25.4 207 381-587 35-243 (250)
62 TIGR02521 type_IV_pilW type IV 99.8 2.5E-17 5.4E-22 163.6 28.3 201 449-649 31-233 (234)
63 PRK10747 putative protoheme IX 99.8 1.6E-16 3.5E-21 169.1 35.9 265 381-649 117-391 (398)
64 PLN03218 maturation of RBCL 1; 99.8 9E-15 1.9E-19 170.0 52.2 268 379-649 505-784 (1060)
65 TIGR02521 type_IV_pilW type IV 99.8 4.2E-17 9.2E-22 162.0 28.7 201 380-580 30-232 (234)
66 PLN02789 farnesyltranstransfer 99.8 3.7E-17 8E-22 165.3 26.0 217 415-631 37-267 (320)
67 PLN02789 farnesyltranstransfer 99.8 5.2E-17 1.1E-21 164.2 26.6 221 377-597 33-267 (320)
68 COG2956 Predicted N-acetylgluc 99.8 5.3E-16 1.1E-20 146.8 30.9 270 383-654 37-317 (389)
69 PLN03081 pentatricopeptide (PP 99.8 9.5E-16 2.1E-20 176.6 39.9 265 379-648 288-557 (697)
70 KOG0553 TPR repeat-containing 99.8 5.5E-19 1.2E-23 166.7 10.5 107 31-137 76-183 (304)
71 PLN03077 Protein ECB2; Provisi 99.8 4.6E-15 1E-19 175.3 45.2 292 378-686 421-717 (857)
72 PLN03218 maturation of RBCL 1; 99.8 8.9E-14 1.9E-18 161.8 53.2 270 378-651 539-819 (1060)
73 KOG1156 N-terminal acetyltrans 99.8 1.5E-14 3.3E-19 149.2 40.0 436 41-687 12-509 (700)
74 KOG1127 TPR repeat-containing 99.8 2.9E-16 6.4E-21 168.3 28.4 286 382-669 563-900 (1238)
75 KOG3785 Uncharacterized conser 99.8 7.2E-15 1.6E-19 140.3 34.8 304 382-697 152-497 (557)
76 KOG1156 N-terminal acetyltrans 99.7 3.8E-14 8.3E-19 146.3 37.6 282 369-652 97-438 (700)
77 PLN03077 Protein ECB2; Provisi 99.7 3.4E-14 7.3E-19 168.0 42.8 298 382-697 390-694 (857)
78 KOG1840 Kinesin light chain [C 99.7 8.9E-16 1.9E-20 161.7 25.8 243 372-648 190-479 (508)
79 COG2956 Predicted N-acetylgluc 99.7 9.4E-15 2E-19 138.4 29.5 269 419-696 39-318 (389)
80 KOG1840 Kinesin light chain [C 99.7 4E-15 8.7E-20 156.8 28.9 221 358-578 214-477 (508)
81 KOG1915 Cell cycle control pro 99.7 5.2E-12 1.1E-16 125.6 47.3 437 40-694 76-541 (677)
82 cd05804 StaR_like StaR_like; a 99.7 8E-14 1.7E-18 148.0 34.2 311 377-688 2-335 (355)
83 cd05804 StaR_like StaR_like; a 99.7 2.9E-13 6.4E-18 143.7 35.4 268 381-649 43-337 (355)
84 KOG2376 Signal recognition par 99.6 1.5E-11 3.2E-16 126.2 40.2 283 381-663 110-502 (652)
85 KOG4234 TPR repeat-containing 99.6 6.5E-15 1.4E-19 129.5 13.2 120 34-153 93-218 (271)
86 PF12569 NARP1: NMDA receptor- 99.6 2E-12 4.3E-17 138.5 32.9 305 381-688 4-333 (517)
87 TIGR03302 OM_YfiO outer membra 99.6 1.2E-13 2.6E-18 136.9 22.1 189 377-582 29-234 (235)
88 TIGR03302 OM_YfiO outer membra 99.6 1E-13 2.2E-18 137.4 21.5 190 445-651 29-235 (235)
89 PRK15359 type III secretion sy 99.6 4.3E-14 9.2E-19 126.7 16.9 126 537-665 13-138 (144)
90 COG3071 HemY Uncharacterized e 99.6 1.3E-11 2.9E-16 121.2 33.1 299 381-683 84-391 (400)
91 KOG4648 Uncharacterized conser 99.6 1.5E-14 3.2E-19 137.6 11.2 112 29-140 90-202 (536)
92 PRK15359 type III secretion sy 99.6 8.1E-14 1.8E-18 124.9 15.2 127 503-632 13-139 (144)
93 KOG2376 Signal recognition par 99.6 1.1E-10 2.4E-15 119.9 38.3 265 379-644 173-516 (652)
94 PRK14720 transcript cleavage f 99.6 8.1E-13 1.8E-17 147.3 25.0 281 369-702 19-319 (906)
95 KOG1130 Predicted G-alpha GTPa 99.5 1.1E-13 2.5E-18 134.8 14.6 263 386-648 22-344 (639)
96 KOG3060 Uncharacterized conser 99.5 5.1E-12 1.1E-16 116.2 23.8 184 480-663 49-235 (289)
97 PF12569 NARP1: NMDA receptor- 99.5 1.4E-10 3E-15 124.5 38.4 255 381-645 194-517 (517)
98 KOG3060 Uncharacterized conser 99.5 5.1E-12 1.1E-16 116.2 22.9 187 446-632 49-238 (289)
99 KOG1915 Cell cycle control pro 99.5 3.8E-10 8.3E-15 112.6 37.0 333 363-697 55-407 (677)
100 PRK10370 formate-dependent nit 99.5 1.4E-12 3.1E-17 123.4 19.1 125 530-654 52-179 (198)
101 COG5010 TadD Flp pilus assembl 99.5 5.1E-12 1.1E-16 117.8 20.8 165 441-606 59-223 (257)
102 COG5010 TadD Flp pilus assembl 99.5 5.8E-12 1.2E-16 117.4 20.9 182 464-646 48-229 (257)
103 KOG0543 FKBP-type peptidyl-pro 99.5 8.2E-13 1.8E-17 130.8 15.1 123 31-153 203-341 (397)
104 KOG3785 Uncharacterized conser 99.5 5E-11 1.1E-15 114.5 26.5 290 384-687 60-350 (557)
105 KOG1130 Predicted G-alpha GTPa 99.5 5.3E-13 1.1E-17 130.2 13.3 267 420-687 22-342 (639)
106 PRK10370 formate-dependent nit 99.5 7.3E-12 1.6E-16 118.6 20.7 120 429-548 53-175 (198)
107 PRK15179 Vi polysaccharide bio 99.5 1.3E-11 2.9E-16 137.3 24.9 156 501-656 70-225 (694)
108 KOG1128 Uncharacterized conser 99.4 5.1E-12 1.1E-16 132.8 19.4 224 413-651 396-619 (777)
109 PRK14720 transcript cleavage f 99.4 2.1E-11 4.6E-16 136.2 24.6 223 410-664 26-268 (906)
110 KOG1128 Uncharacterized conser 99.4 7.9E-12 1.7E-16 131.4 18.5 223 377-614 394-616 (777)
111 PF04733 Coatomer_E: Coatomer 99.4 2.9E-12 6.4E-17 128.2 14.7 258 388-654 8-271 (290)
112 TIGR02552 LcrH_SycD type III s 99.4 9.5E-12 2.1E-16 111.4 15.4 117 538-654 4-120 (135)
113 PRK15179 Vi polysaccharide bio 99.4 7.9E-11 1.7E-15 131.2 25.4 149 441-589 78-226 (694)
114 COG3071 HemY Uncharacterized e 99.4 2E-09 4.3E-14 106.2 31.8 258 419-686 88-354 (400)
115 PRK04841 transcriptional regul 99.4 8.3E-10 1.8E-14 132.6 34.6 310 381-691 409-762 (903)
116 PRK04841 transcriptional regul 99.4 6.5E-09 1.4E-13 124.9 41.1 267 386-652 457-764 (903)
117 PLN03088 SGT1, suppressor of 99.3 1.5E-11 3.2E-16 128.1 15.5 114 38-151 4-118 (356)
118 TIGR02552 LcrH_SycD type III s 99.3 3.2E-11 7E-16 107.9 15.7 116 403-518 5-120 (135)
119 KOG0553 TPR repeat-containing 99.3 2.3E-11 5E-16 115.6 13.9 120 381-500 81-200 (304)
120 KOG4642 Chaperone-dependent E3 99.3 3.8E-12 8.2E-17 115.7 7.5 106 32-137 6-112 (284)
121 KOG4340 Uncharacterized conser 99.3 7.6E-10 1.7E-14 104.1 22.5 153 392-544 21-205 (459)
122 PRK15363 pathogenicity island 99.3 9.1E-11 2E-15 102.4 15.1 111 543-653 26-137 (157)
123 PRK15363 pathogenicity island 99.3 1.6E-10 3.4E-15 101.0 15.5 112 369-480 22-134 (157)
124 COG4783 Putative Zn-dependent 99.3 1.9E-09 4.1E-14 109.3 24.9 154 412-582 303-456 (484)
125 KOG2047 mRNA splicing factor [ 99.3 2.5E-07 5.4E-12 96.4 39.8 221 428-648 360-615 (835)
126 PF04733 Coatomer_E: Coatomer 99.2 8.6E-11 1.9E-15 117.8 13.7 257 422-694 8-270 (290)
127 KOG2047 mRNA splicing factor [ 99.2 9.6E-08 2.1E-12 99.4 33.5 192 496-691 360-581 (835)
128 COG4783 Putative Zn-dependent 99.2 6.9E-09 1.5E-13 105.3 24.7 153 480-649 303-455 (484)
129 KOG4340 Uncharacterized conser 99.2 4.1E-09 9E-14 99.2 21.0 276 365-645 28-372 (459)
130 PRK10866 outer membrane biogen 99.2 1.2E-08 2.6E-13 99.9 24.4 104 379-482 30-157 (243)
131 KOG0551 Hsp90 co-chaperone CNS 99.2 1.5E-10 3.3E-15 110.7 10.6 113 21-133 66-183 (390)
132 PLN03088 SGT1, suppressor of 99.1 1.1E-09 2.5E-14 114.1 16.6 113 384-496 5-117 (356)
133 KOG0376 Serine-threonine phosp 99.1 6.8E-11 1.5E-15 119.6 6.7 120 34-153 2-122 (476)
134 PF13525 YfiO: Outer membrane 99.1 1.3E-08 2.8E-13 97.4 21.3 172 379-570 3-197 (203)
135 KOG1941 Acetylcholine receptor 99.1 6E-08 1.3E-12 94.0 25.0 302 381-683 6-354 (518)
136 KOG0545 Aryl-hydrocarbon recep 99.1 1.7E-09 3.6E-14 99.0 13.6 113 32-144 174-305 (329)
137 PF13414 TPR_11: TPR repeat; P 99.1 3.3E-10 7.2E-15 87.5 7.8 67 68-134 2-69 (69)
138 PF12895 Apc3: Anaphase-promot 99.1 3.1E-10 6.8E-15 91.4 7.2 80 49-129 2-84 (84)
139 PRK10866 outer membrane biogen 99.1 3.2E-08 6.9E-13 96.9 22.5 181 448-645 31-238 (243)
140 PF13525 YfiO: Outer membrane 99.1 1.8E-08 3.9E-13 96.4 19.6 174 449-639 5-198 (203)
141 COG0457 NrfG FOG: TPR repeat [ 99.0 1.6E-06 3.5E-11 86.1 33.9 223 429-651 37-268 (291)
142 COG0457 NrfG FOG: TPR repeat [ 99.0 1.7E-06 3.6E-11 86.0 33.2 224 394-617 36-268 (291)
143 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.2E-08 2.6E-13 88.9 14.7 105 381-485 2-112 (119)
144 TIGR02795 tol_pal_ybgF tol-pal 99.0 9.2E-09 2E-13 89.7 13.9 104 551-654 2-111 (119)
145 PRK10153 DNA-binding transcrip 99.0 2.7E-08 5.9E-13 107.9 18.9 131 533-664 358-498 (517)
146 PF13414 TPR_11: TPR repeat; P 99.0 2.3E-09 5E-14 82.7 7.7 67 584-650 2-69 (69)
147 COG4785 NlpI Lipoprotein NlpI, 99.0 1.1E-07 2.4E-12 85.7 19.0 197 378-580 62-266 (297)
148 COG4785 NlpI Lipoprotein NlpI, 98.9 9.7E-08 2.1E-12 86.1 18.2 197 415-616 65-268 (297)
149 PRK02603 photosystem I assembl 98.9 3.9E-08 8.4E-13 91.7 16.7 121 376-516 30-153 (172)
150 PF13432 TPR_16: Tetratricopep 98.9 3.4E-09 7.5E-14 80.6 7.8 65 73-137 1-65 (65)
151 KOG3081 Vesicle coat complex C 98.9 6.5E-07 1.4E-11 83.8 24.0 256 388-654 15-277 (299)
152 PRK11906 transcriptional regul 98.9 6.7E-08 1.4E-12 99.0 19.2 161 383-543 257-433 (458)
153 COG4235 Cytochrome c biogenesi 98.9 3E-08 6.4E-13 95.6 15.5 122 533-654 138-262 (287)
154 COG4235 Cytochrome c biogenesi 98.9 3.7E-08 8E-13 95.0 16.1 119 432-550 139-260 (287)
155 PF14938 SNAP: Soluble NSF att 98.9 2.5E-08 5.4E-13 101.0 15.8 168 523-691 81-268 (282)
156 cd00189 TPR Tetratricopeptide 98.9 1.3E-08 2.9E-13 84.4 11.8 99 553-651 2-100 (100)
157 KOG1070 rRNA processing protei 98.9 8.1E-07 1.8E-11 100.4 28.4 216 399-615 1442-1664(1710)
158 KOG4648 Uncharacterized conser 98.9 1.1E-09 2.3E-14 105.0 5.0 226 384-618 100-334 (536)
159 PF09976 TPR_21: Tetratricopep 98.9 8E-08 1.7E-12 86.6 16.9 128 382-510 12-145 (145)
160 PF14938 SNAP: Soluble NSF att 98.9 3.2E-08 6.9E-13 100.2 15.4 183 498-695 30-231 (282)
161 PRK02603 photosystem I assembl 98.9 5.6E-08 1.2E-12 90.6 15.9 118 413-550 33-153 (172)
162 PRK10153 DNA-binding transcrip 98.9 9.7E-08 2.1E-12 103.7 19.8 137 380-517 338-487 (517)
163 PF09976 TPR_21: Tetratricopep 98.9 1.1E-07 2.3E-12 85.8 17.0 117 529-646 23-145 (145)
164 PRK15331 chaperone protein Sic 98.9 5.3E-08 1.1E-12 85.6 13.5 114 369-483 25-138 (165)
165 PF13432 TPR_16: Tetratricopep 98.9 1E-08 2.2E-13 78.0 8.1 64 590-653 2-65 (65)
166 cd00189 TPR Tetratricopeptide 98.9 3.7E-08 8.1E-13 81.7 12.2 97 384-480 3-99 (100)
167 PF12895 Apc3: Anaphase-promot 98.9 8.1E-09 1.7E-13 83.2 7.6 81 564-645 2-84 (84)
168 PRK11906 transcriptional regul 98.9 2E-07 4.4E-12 95.6 19.3 158 419-576 259-432 (458)
169 CHL00033 ycf3 photosystem I as 98.9 6.5E-08 1.4E-12 89.9 14.7 100 395-494 13-117 (168)
170 KOG4555 TPR repeat-containing 98.9 8.3E-08 1.8E-12 78.9 13.1 112 43-156 50-166 (175)
171 PRK15331 chaperone protein Sic 98.8 3.7E-08 7.9E-13 86.6 11.6 109 544-653 30-138 (165)
172 KOG1070 rRNA processing protei 98.8 7.4E-07 1.6E-11 100.7 24.1 218 431-649 1440-1664(1710)
173 CHL00033 ycf3 photosystem I as 98.8 7.5E-08 1.6E-12 89.5 14.0 125 567-691 15-151 (168)
174 KOG0543 FKBP-type peptidyl-pro 98.8 1E-07 2.2E-12 95.2 14.5 147 485-650 210-357 (397)
175 PRK10803 tol-pal system protei 98.8 3.2E-07 6.9E-12 90.4 16.9 106 380-485 141-253 (263)
176 KOG1941 Acetylcholine receptor 98.8 1.1E-06 2.4E-11 85.5 19.9 234 417-650 8-277 (518)
177 COG3898 Uncharacterized membra 98.8 4.2E-05 9.1E-10 75.6 30.8 297 384-694 87-399 (531)
178 KOG2053 Mitochondrial inherita 98.8 2.1E-05 4.6E-10 85.9 31.5 227 391-618 19-259 (932)
179 KOG3081 Vesicle coat complex C 98.8 4E-06 8.7E-11 78.7 22.4 230 422-662 15-250 (299)
180 COG3898 Uncharacterized membra 98.7 3.2E-05 6.9E-10 76.4 29.1 262 379-648 118-392 (531)
181 COG4105 ComL DNA uptake lipopr 98.7 4.4E-06 9.6E-11 79.0 22.4 191 377-584 30-237 (254)
182 PRK10803 tol-pal system protei 98.7 3.3E-07 7.1E-12 90.3 14.8 104 551-654 142-252 (263)
183 KOG1308 Hsp70-interacting prot 98.7 9E-09 2E-13 99.5 3.6 109 25-133 102-212 (377)
184 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 5.5E-07 1.2E-11 93.3 15.9 115 527-644 179-293 (395)
185 COG4700 Uncharacterized protei 98.7 8.7E-06 1.9E-10 71.9 20.3 150 496-647 69-221 (251)
186 KOG3617 WD40 and TPR repeat-co 98.6 1.5E-05 3.3E-10 85.5 25.4 253 383-645 802-1171(1416)
187 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 9.7E-07 2.1E-11 91.5 16.3 116 424-542 178-293 (395)
188 COG4105 ComL DNA uptake lipopr 98.6 2E-05 4.3E-10 74.7 22.0 188 449-653 34-238 (254)
189 PF12688 TPR_5: Tetratrico pep 98.6 1.3E-06 2.9E-11 74.2 12.8 56 588-643 41-99 (120)
190 PF13371 TPR_9: Tetratricopept 98.6 2.4E-07 5.3E-12 72.3 7.8 65 76-140 2-66 (73)
191 PF12688 TPR_5: Tetratrico pep 98.6 2.6E-06 5.6E-11 72.4 14.1 96 518-613 2-103 (120)
192 PF14559 TPR_19: Tetratricopep 98.5 2.8E-07 6E-12 70.8 7.5 66 392-457 2-67 (68)
193 KOG2471 TPR repeat-containing 98.5 1.6E-05 3.6E-10 80.5 21.6 309 370-686 229-681 (696)
194 KOG2796 Uncharacterized conser 98.5 0.00021 4.6E-09 67.0 26.9 226 415-653 69-320 (366)
195 KOG2471 TPR repeat-containing 98.5 1.5E-05 3.2E-10 80.9 20.9 264 383-647 285-683 (696)
196 PF13371 TPR_9: Tetratricopept 98.5 4.4E-07 9.6E-12 70.8 8.3 67 592-658 2-68 (73)
197 KOG2053 Mitochondrial inherita 98.5 7.3E-05 1.6E-09 81.8 27.5 226 426-652 20-259 (932)
198 KOG3617 WD40 and TPR repeat-co 98.5 3.7E-05 8E-10 82.7 24.6 226 391-646 738-994 (1416)
199 PF13512 TPR_18: Tetratricopep 98.5 5E-06 1.1E-10 71.7 14.6 87 378-464 7-99 (142)
200 KOG4234 TPR repeat-containing 98.5 1.7E-06 3.7E-11 77.1 11.9 97 558-654 102-203 (271)
201 PF14559 TPR_19: Tetratricopep 98.5 5.1E-07 1.1E-11 69.3 7.8 61 597-657 3-63 (68)
202 COG1729 Uncharacterized protei 98.5 4.6E-06 9.9E-11 79.8 15.3 105 384-488 144-254 (262)
203 COG1729 Uncharacterized protei 98.5 2.8E-06 6.1E-11 81.2 13.3 101 554-654 144-250 (262)
204 COG4700 Uncharacterized protei 98.4 3.9E-05 8.4E-10 67.9 18.0 147 463-611 70-219 (251)
205 KOG2796 Uncharacterized conser 98.4 0.00039 8.5E-09 65.3 25.0 238 379-629 67-333 (366)
206 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.2E-06 2.5E-11 90.0 8.8 66 67-132 73-141 (453)
207 KOG2300 Uncharacterized conser 98.4 0.0012 2.6E-08 67.6 29.4 329 362-690 24-475 (629)
208 KOG1586 Protein required for f 98.4 0.0001 2.2E-09 67.9 19.9 162 528-689 84-265 (288)
209 KOG1586 Protein required for f 98.3 5.9E-05 1.3E-09 69.4 17.9 187 495-696 26-231 (288)
210 PF13512 TPR_18: Tetratricopep 98.3 1.6E-05 3.4E-10 68.6 13.6 104 551-654 10-134 (142)
211 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 3.7E-06 8E-11 86.4 9.6 70 546-615 70-142 (453)
212 PF06552 TOM20_plant: Plant sp 98.3 6.4E-06 1.4E-10 73.2 9.7 97 601-697 7-117 (186)
213 KOG4555 TPR repeat-containing 98.2 6.9E-05 1.5E-09 62.1 14.0 98 384-481 46-147 (175)
214 PF13424 TPR_12: Tetratricopep 98.2 3E-06 6.5E-11 67.0 6.0 62 70-131 6-74 (78)
215 KOG1914 mRNA cleavage and poly 98.2 0.0067 1.5E-07 63.2 30.4 71 372-443 11-81 (656)
216 PF13431 TPR_17: Tetratricopep 98.1 3.3E-06 7.2E-11 53.7 3.3 32 92-123 2-33 (34)
217 PF06552 TOM20_plant: Plant sp 98.1 3.2E-05 7E-10 68.8 10.2 54 601-654 51-115 (186)
218 KOG2610 Uncharacterized conser 98.0 0.00032 6.9E-09 68.1 17.1 156 526-684 112-271 (491)
219 KOG1310 WD40 repeat protein [G 98.0 1.5E-05 3.2E-10 81.6 8.3 115 29-143 367-485 (758)
220 KOG2610 Uncharacterized conser 98.0 0.00054 1.2E-08 66.6 18.0 160 419-578 107-274 (491)
221 KOG1585 Protein required for f 98.0 0.0038 8.1E-08 58.3 22.4 199 381-609 31-251 (308)
222 KOG1258 mRNA processing protei 98.0 0.027 5.8E-07 60.1 31.2 116 364-479 62-181 (577)
223 PF04184 ST7: ST7 protein; In 98.0 0.001 2.3E-08 68.8 19.9 192 419-623 172-384 (539)
224 KOG1585 Protein required for f 98.0 0.0023 4.9E-08 59.7 20.1 200 417-646 33-254 (308)
225 PF05843 Suf: Suppressor of fo 97.9 0.0004 8.7E-09 70.1 16.9 136 519-654 3-142 (280)
226 PF13424 TPR_12: Tetratricopep 97.9 1.3E-05 2.8E-10 63.4 4.9 73 617-689 3-75 (78)
227 PF04184 ST7: ST7 protein; In 97.9 0.0029 6.2E-08 65.6 22.6 190 387-589 174-384 (539)
228 KOG0530 Protein farnesyltransf 97.9 0.0022 4.8E-08 60.4 19.6 164 467-630 61-232 (318)
229 PF07079 DUF1347: Protein of u 97.9 0.045 9.7E-07 56.1 30.1 95 384-478 48-157 (549)
230 KOG4642 Chaperone-dependent E3 97.9 0.00015 3.2E-09 67.1 10.8 96 383-478 12-107 (284)
231 KOG4507 Uncharacterized conser 97.9 0.00076 1.6E-08 70.4 17.0 111 372-482 204-316 (886)
232 PF05843 Suf: Suppressor of fo 97.9 0.00055 1.2E-08 69.1 16.0 133 451-583 3-139 (280)
233 PF02259 FAT: FAT domain; Int 97.8 0.011 2.4E-07 62.5 26.3 116 517-632 146-305 (352)
234 PF13428 TPR_14: Tetratricopep 97.8 5.1E-05 1.1E-09 51.9 5.5 41 620-660 2-42 (44)
235 PF13428 TPR_14: Tetratricopep 97.8 3.6E-05 7.8E-10 52.6 4.6 43 69-111 1-43 (44)
236 KOG3616 Selective LIM binding 97.8 0.044 9.6E-07 59.1 28.9 262 381-652 661-1028(1636)
237 PF02259 FAT: FAT domain; Int 97.8 0.017 3.7E-07 61.0 26.7 146 547-692 142-341 (352)
238 COG2909 MalT ATP-dependent tra 97.7 0.061 1.3E-06 60.1 30.1 303 379-687 345-686 (894)
239 PF00515 TPR_1: Tetratricopept 97.7 4.6E-05 9.9E-10 48.8 3.9 31 71-101 3-33 (34)
240 PF10300 DUF3808: Protein of u 97.7 0.03 6.5E-07 60.9 27.5 153 529-688 200-375 (468)
241 KOG1550 Extracellular protein 97.7 0.013 2.9E-07 65.3 25.3 263 379-652 242-542 (552)
242 KOG0530 Protein farnesyltransf 97.7 0.011 2.4E-07 55.9 20.2 164 434-597 62-233 (318)
243 KOG0376 Serine-threonine phosp 97.7 7.3E-05 1.6E-09 76.7 6.5 111 383-493 6-116 (476)
244 KOG0545 Aryl-hydrocarbon recep 97.6 0.0012 2.7E-08 61.3 13.0 105 380-484 177-299 (329)
245 PF13281 DUF4071: Domain of un 97.6 0.026 5.7E-07 58.0 23.7 81 380-460 140-228 (374)
246 PF13281 DUF4071: Domain of un 97.6 0.0086 1.9E-07 61.4 19.9 191 415-653 141-339 (374)
247 PF13431 TPR_17: Tetratricopep 97.6 6.1E-05 1.3E-09 47.8 2.8 32 608-639 2-33 (34)
248 PF00515 TPR_1: Tetratricopept 97.6 0.00015 3.3E-09 46.4 4.7 34 619-652 1-34 (34)
249 PF07719 TPR_2: Tetratricopept 97.5 0.00021 4.4E-09 45.7 5.0 34 619-652 1-34 (34)
250 COG3118 Thioredoxin domain-con 97.5 0.0058 1.3E-07 59.3 16.4 151 380-531 133-286 (304)
251 KOG0985 Vesicle coat protein c 97.5 0.089 1.9E-06 59.2 26.2 231 388-645 1055-1338(1666)
252 KOG1550 Extracellular protein 97.4 0.082 1.8E-06 59.1 27.1 244 396-649 227-505 (552)
253 PF10300 DUF3808: Protein of u 97.4 0.061 1.3E-06 58.6 25.1 177 470-649 178-377 (468)
254 PF07719 TPR_2: Tetratricopept 97.4 0.00036 7.8E-09 44.5 4.8 31 104-134 2-32 (34)
255 PF08631 SPO22: Meiosis protei 97.4 0.11 2.5E-06 52.4 25.1 39 649-687 235-273 (278)
256 PF10345 Cohesin_load: Cohesin 97.3 0.46 9.9E-06 54.1 31.9 286 398-684 38-428 (608)
257 COG3118 Thioredoxin domain-con 97.3 0.013 2.7E-07 57.0 16.1 149 415-565 134-286 (304)
258 COG2909 MalT ATP-dependent tra 97.3 0.48 1E-05 53.3 30.4 234 379-612 413-686 (894)
259 COG2976 Uncharacterized protei 97.3 0.025 5.3E-07 51.4 16.5 119 535-654 70-194 (207)
260 KOG1258 mRNA processing protei 97.3 0.37 7.9E-06 51.8 34.0 290 368-657 100-479 (577)
261 KOG4507 Uncharacterized conser 97.3 0.011 2.4E-07 62.1 15.9 117 402-518 200-318 (886)
262 PF10345 Cohesin_load: Cohesin 97.2 0.58 1.3E-05 53.3 31.6 274 369-643 43-428 (608)
263 COG2976 Uncharacterized protei 97.2 0.0045 9.7E-08 56.1 11.4 91 45-137 98-193 (207)
264 PF08631 SPO22: Meiosis protei 97.2 0.31 6.7E-06 49.3 27.5 53 392-444 4-65 (278)
265 KOG1914 mRNA cleavage and poly 97.2 0.13 2.8E-06 54.1 22.4 47 84-130 34-80 (656)
266 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0062 1.4E-07 59.6 12.2 101 553-653 83-187 (390)
267 COG0790 FOG: TPR repeat, SEL1 97.1 0.17 3.7E-06 51.8 23.5 190 426-651 52-269 (292)
268 PF03704 BTAD: Bacterial trans 97.1 0.015 3.2E-07 52.4 13.8 63 586-648 63-125 (146)
269 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.46 9.9E-06 48.9 26.7 74 369-442 30-103 (660)
270 KOG0985 Vesicle coat protein c 97.1 0.079 1.7E-06 59.6 20.9 212 379-611 1102-1338(1666)
271 KOG3616 Selective LIM binding 97.0 0.75 1.6E-05 50.2 29.9 49 80-129 455-503 (1636)
272 PF13181 TPR_8: Tetratricopept 97.0 0.0014 3.1E-08 41.7 4.4 32 620-651 2-33 (34)
273 COG0790 FOG: TPR repeat, SEL1 97.0 0.46 1E-05 48.6 25.4 170 387-565 47-236 (292)
274 KOG1308 Hsp70-interacting prot 97.0 0.00073 1.6E-08 66.3 4.2 95 386-480 119-213 (377)
275 PF13181 TPR_8: Tetratricopept 97.0 0.0016 3.5E-08 41.5 4.6 31 104-134 2-32 (34)
276 PF03704 BTAD: Bacterial trans 96.9 0.026 5.7E-07 50.8 13.6 63 551-613 62-124 (146)
277 KOG0546 HSP90 co-chaperone CPR 96.9 0.0018 3.8E-08 64.1 6.1 121 29-149 215-355 (372)
278 PF12968 DUF3856: Domain of Un 96.8 0.012 2.6E-07 48.3 9.3 89 42-130 15-127 (144)
279 PF08424 NRDE-2: NRDE-2, neces 96.8 0.14 3E-06 52.8 19.2 80 466-545 48-130 (321)
280 PF08424 NRDE-2: NRDE-2, neces 96.7 0.097 2.1E-06 54.0 17.5 116 535-650 49-185 (321)
281 PF13176 TPR_7: Tetratricopept 96.7 0.0024 5.1E-08 41.3 3.6 29 105-133 1-29 (36)
282 KOG1464 COP9 signalosome, subu 96.7 0.15 3.3E-06 48.6 16.7 49 429-477 41-93 (440)
283 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0059 1.3E-07 43.0 5.7 42 71-112 3-44 (53)
284 PF04910 Tcf25: Transcriptiona 96.7 0.058 1.3E-06 56.3 15.6 174 476-654 33-228 (360)
285 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.42 9.1E-06 49.2 20.6 240 403-652 290-535 (660)
286 KOG3783 Uncharacterized conser 96.5 0.33 7.2E-06 51.4 19.7 250 432-694 250-525 (546)
287 KOG2041 WD40 repeat protein [G 96.5 0.28 6E-06 53.1 19.2 237 377-645 688-936 (1189)
288 PF04910 Tcf25: Transcriptiona 96.5 0.13 2.9E-06 53.6 17.0 168 407-582 32-224 (360)
289 KOG0890 Protein kinase of the 96.5 4 8.7E-05 51.4 35.8 84 41-124 1454-1539(2382)
290 KOG2300 Uncharacterized conser 96.5 1.4 3E-05 46.0 42.2 185 496-681 288-506 (629)
291 PF07079 DUF1347: Protein of u 96.4 1.5 3.2E-05 45.6 29.9 132 381-512 6-157 (549)
292 PF13174 TPR_6: Tetratricopept 96.4 0.0064 1.4E-07 38.3 4.2 33 620-652 1-33 (33)
293 KOG3783 Uncharacterized conser 96.3 0.22 4.7E-06 52.7 16.5 242 398-652 250-524 (546)
294 PF13176 TPR_7: Tetratricopept 96.3 0.006 1.3E-07 39.4 3.5 30 621-650 1-30 (36)
295 KOG1464 COP9 signalosome, subu 96.2 0.43 9.4E-06 45.6 16.6 188 393-580 39-260 (440)
296 KOG4151 Myosin assembly protei 96.2 0.022 4.8E-07 62.6 9.1 124 27-150 44-174 (748)
297 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.031 6.7E-07 39.4 6.5 40 620-659 2-41 (53)
298 KOG2041 WD40 repeat protein [G 96.1 0.93 2E-05 49.3 20.0 216 396-644 678-903 (1189)
299 PF13174 TPR_6: Tetratricopept 95.9 0.016 3.5E-07 36.4 4.3 31 383-413 2-32 (33)
300 PRK10941 hypothetical protein; 95.9 0.067 1.5E-06 52.9 10.5 72 587-658 183-254 (269)
301 KOG2396 HAT (Half-A-TPR) repea 95.8 0.21 4.5E-06 52.2 13.7 87 537-623 91-178 (568)
302 PF04781 DUF627: Protein of un 95.8 0.13 2.8E-06 42.4 9.8 103 387-512 2-107 (111)
303 KOG0890 Protein kinase of the 95.8 6.3 0.00014 49.8 27.7 127 567-695 1645-1790(2382)
304 KOG2396 HAT (Half-A-TPR) repea 95.7 3.5 7.5E-05 43.6 37.9 94 56-149 91-186 (568)
305 PRK10941 hypothetical protein; 95.7 0.094 2E-06 51.9 10.5 70 72-141 184-253 (269)
306 PF09613 HrpB1_HrpK: Bacterial 95.7 0.23 4.9E-06 44.2 11.7 85 381-465 10-94 (160)
307 KOG3824 Huntingtin interacting 95.6 0.044 9.6E-07 53.0 7.5 77 553-629 118-194 (472)
308 PF09613 HrpB1_HrpK: Bacterial 95.6 0.25 5.4E-06 44.0 11.6 84 552-635 11-94 (160)
309 KOG3824 Huntingtin interacting 95.5 0.048 1E-06 52.8 7.5 76 383-458 118-193 (472)
310 smart00028 TPR Tetratricopepti 95.4 0.027 5.8E-07 34.8 3.9 30 72-101 4-33 (34)
311 PF04781 DUF627: Protein of un 95.3 0.21 4.5E-06 41.2 9.4 103 421-546 2-107 (111)
312 PF15015 NYD-SP12_N: Spermatog 95.3 0.089 1.9E-06 53.4 8.7 106 44-149 184-311 (569)
313 PF14561 TPR_20: Tetratricopep 95.2 0.24 5.1E-06 39.9 9.5 65 401-465 8-74 (90)
314 COG4976 Predicted methyltransf 95.1 0.031 6.8E-07 51.9 4.7 61 77-137 3-63 (287)
315 smart00028 TPR Tetratricopepti 95.1 0.034 7.3E-07 34.3 3.8 32 620-651 2-33 (34)
316 PRK15180 Vi polysaccharide bio 95.0 0.34 7.3E-06 50.1 11.9 123 495-617 301-423 (831)
317 PF14561 TPR_20: Tetratricopep 94.9 0.35 7.6E-06 38.9 9.8 64 571-634 8-73 (90)
318 COG3914 Spy Predicted O-linked 94.9 1.2 2.5E-05 47.9 15.8 126 502-627 50-184 (620)
319 PF12968 DUF3856: Domain of Un 94.8 0.58 1.3E-05 38.8 10.6 94 384-477 12-128 (144)
320 PRK15180 Vi polysaccharide bio 94.8 0.49 1.1E-05 49.0 12.4 127 391-517 299-425 (831)
321 COG4649 Uncharacterized protei 94.5 3.4 7.3E-05 37.1 16.5 93 555-647 98-195 (221)
322 PRK11619 lytic murein transgly 94.5 11 0.00024 42.9 28.4 118 528-646 252-373 (644)
323 COG4649 Uncharacterized protei 94.5 3.5 7.6E-05 37.0 16.8 143 488-631 63-212 (221)
324 COG3914 Spy Predicted O-linked 94.3 2.2 4.7E-05 46.0 16.3 128 433-560 49-185 (620)
325 TIGR02561 HrpB1_HrpK type III 94.1 0.63 1.4E-05 40.7 10.0 82 554-635 13-94 (153)
326 PF09986 DUF2225: Uncharacteri 94.0 0.62 1.3E-05 44.6 10.8 68 585-652 118-198 (214)
327 KOG3364 Membrane protein invol 93.8 1.3 2.9E-05 37.8 11.0 75 585-659 32-111 (149)
328 TIGR02561 HrpB1_HrpK type III 93.8 1 2.2E-05 39.4 10.5 82 384-465 13-94 (153)
329 COG4976 Predicted methyltransf 93.7 0.11 2.3E-06 48.5 4.8 59 560-618 4-62 (287)
330 KOG1310 WD40 repeat protein [G 93.6 0.26 5.6E-06 51.7 7.9 102 381-482 374-478 (758)
331 KOG1538 Uncharacterized conser 93.5 6.2 0.00013 42.9 17.7 57 383-440 587-657 (1081)
332 PRK13184 pknD serine/threonine 93.4 21 0.00045 42.3 23.8 100 385-485 479-588 (932)
333 KOG2422 Uncharacterized conser 93.4 5.5 0.00012 42.9 17.1 154 463-617 252-451 (665)
334 PF10602 RPN7: 26S proteasome 93.4 1.3 2.8E-05 41.1 11.6 99 586-685 37-138 (177)
335 KOG1839 Uncharacterized protei 93.3 0.8 1.7E-05 53.9 12.1 134 379-512 930-1086(1236)
336 KOG1538 Uncharacterized conser 93.2 3.8 8.2E-05 44.5 15.6 17 456-472 639-655 (1081)
337 PF10602 RPN7: 26S proteasome 93.1 1.4 3.1E-05 40.8 11.5 59 519-577 38-99 (177)
338 KOG2422 Uncharacterized conser 93.0 12 0.00025 40.5 18.9 155 394-549 251-451 (665)
339 COG5191 Uncharacterized conser 92.8 0.25 5.3E-06 48.3 6.0 84 574-657 96-180 (435)
340 KOG4814 Uncharacterized conser 92.8 1.6 3.4E-05 47.2 12.3 89 42-130 360-455 (872)
341 PF10516 SHNi-TPR: SHNi-TPR; 92.7 0.22 4.9E-06 32.2 3.9 28 104-131 2-29 (38)
342 COG5159 RPN6 26S proteasome re 92.7 11 0.00023 36.9 21.3 265 385-651 7-317 (421)
343 COG1747 Uncharacterized N-term 92.6 16 0.00035 38.9 24.8 95 414-511 65-159 (711)
344 PF04053 Coatomer_WDAD: Coatom 92.5 4.9 0.00011 43.3 16.0 158 389-576 269-427 (443)
345 PF09986 DUF2225: Uncharacteri 92.5 2 4.4E-05 41.1 11.8 31 585-615 165-195 (214)
346 KOG1839 Uncharacterized protei 92.3 1.4 3E-05 52.0 12.2 164 485-648 934-1128(1236)
347 KOG1463 26S proteasome regulat 92.2 14 0.0003 37.2 22.2 267 385-651 8-319 (411)
348 KOG3364 Membrane protein invol 92.2 3.8 8.1E-05 35.2 11.4 69 451-519 34-107 (149)
349 PF13374 TPR_10: Tetratricopep 92.1 0.33 7.2E-06 32.2 4.5 30 103-132 2-31 (42)
350 KOG4814 Uncharacterized conser 92.0 1.6 3.5E-05 47.2 11.2 93 418-510 357-455 (872)
351 PF12862 Apc5: Anaphase-promot 92.0 0.53 1.2E-05 38.3 6.3 58 79-136 8-74 (94)
352 COG5191 Uncharacterized conser 91.9 0.36 7.9E-06 47.1 5.9 77 479-555 103-180 (435)
353 KOG0529 Protein geranylgeranyl 91.8 6.2 0.00013 40.8 14.7 170 388-557 35-235 (421)
354 KOG2581 26S proteasome regulat 91.6 16 0.00035 37.7 17.1 30 588-617 250-279 (493)
355 PF13374 TPR_10: Tetratricopep 91.5 0.44 9.5E-06 31.6 4.5 30 620-649 3-32 (42)
356 KOG0529 Protein geranylgeranyl 91.4 6.1 0.00013 40.8 14.2 131 432-562 46-194 (421)
357 PF07721 TPR_4: Tetratricopept 91.2 0.32 7E-06 28.5 3.1 24 104-127 2-25 (26)
358 PF12862 Apc5: Anaphase-promot 90.5 1.3 2.7E-05 36.1 7.1 58 43-100 5-72 (94)
359 PF10579 Rapsyn_N: Rapsyn N-te 90.1 3.2 6.9E-05 31.9 8.2 62 382-443 7-71 (80)
360 COG1747 Uncharacterized N-term 89.4 33 0.00072 36.7 23.0 99 377-478 62-160 (711)
361 PF07720 TPR_3: Tetratricopept 89.0 1.4 3.1E-05 28.2 4.9 32 620-651 2-35 (36)
362 KOG1463 26S proteasome regulat 88.8 28 0.00062 35.1 20.1 273 419-696 8-323 (411)
363 KOG3807 Predicted membrane pro 88.6 28 0.00061 34.8 17.2 54 388-443 191-244 (556)
364 COG2912 Uncharacterized conser 88.5 2.6 5.6E-05 41.2 8.6 66 590-655 186-251 (269)
365 COG4941 Predicted RNA polymera 88.2 4.6 9.9E-05 40.4 10.0 97 50-147 310-409 (415)
366 COG2912 Uncharacterized conser 88.2 5.5 0.00012 39.0 10.6 75 553-627 183-257 (269)
367 PF11207 DUF2989: Protein of u 88.0 5.4 0.00012 37.2 9.9 72 567-639 122-198 (203)
368 PF04053 Coatomer_WDAD: Coatom 87.7 45 0.00097 36.1 18.9 157 458-644 270-427 (443)
369 KOG2581 26S proteasome regulat 87.7 38 0.00082 35.2 18.1 132 385-516 130-280 (493)
370 PRK13184 pknD serine/threonine 87.5 4.7 0.0001 47.4 11.5 115 559-674 483-607 (932)
371 PF10579 Rapsyn_N: Rapsyn N-te 87.5 3.4 7.3E-05 31.8 6.8 56 41-96 11-70 (80)
372 PF15015 NYD-SP12_N: Spermatog 87.2 3.1 6.8E-05 42.7 8.5 84 523-606 182-283 (569)
373 PF07721 TPR_4: Tetratricopept 86.5 0.93 2E-05 26.5 2.8 23 621-643 3-25 (26)
374 PF07720 TPR_3: Tetratricopept 86.4 2.8 6.1E-05 26.9 5.1 30 383-412 3-34 (36)
375 KOG0128 RNA-binding protein SA 86.1 69 0.0015 36.6 24.1 247 374-622 106-384 (881)
376 COG3947 Response regulator con 85.9 3.4 7.3E-05 40.4 7.6 58 72-129 282-339 (361)
377 COG3629 DnrI DNA-binding trans 85.1 8.5 0.00018 38.2 10.3 64 415-478 153-216 (280)
378 PF10516 SHNi-TPR: SHNi-TPR; 85.0 1.7 3.6E-05 28.2 3.6 30 620-649 2-31 (38)
379 COG3629 DnrI DNA-binding trans 85.0 4.8 0.0001 39.9 8.5 64 585-648 153-216 (280)
380 PF10255 Paf67: RNA polymerase 84.7 2.9 6.3E-05 43.9 7.2 56 74-130 127-191 (404)
381 COG4941 Predicted RNA polymera 84.1 51 0.0011 33.3 17.6 185 464-657 211-403 (415)
382 PF11207 DUF2989: Protein of u 83.9 13 0.00028 34.8 10.1 53 517-570 141-197 (203)
383 PF09670 Cas_Cas02710: CRISPR- 83.5 21 0.00046 37.8 13.2 62 383-444 133-198 (379)
384 KOG3807 Predicted membrane pro 83.1 54 0.0012 32.9 19.3 141 421-574 190-334 (556)
385 PF14863 Alkyl_sulf_dimr: Alky 82.6 4.6 0.0001 35.5 6.6 59 63-121 64-122 (141)
386 PF12739 TRAPPC-Trs85: ER-Golg 81.0 66 0.0014 34.6 16.2 168 451-650 210-401 (414)
387 KOG0686 COP9 signalosome, subu 80.6 10 0.00022 39.1 8.9 86 44-129 158-255 (466)
388 COG3947 Response regulator con 79.6 8.2 0.00018 37.9 7.5 59 588-646 282-340 (361)
389 PF10373 EST1_DNA_bind: Est1 D 79.5 6.8 0.00015 39.5 7.8 62 536-597 1-62 (278)
390 PF10373 EST1_DNA_bind: Est1 D 79.3 7 0.00015 39.4 7.8 62 502-563 1-62 (278)
391 KOG2063 Vacuolar assembly/sort 79.2 1.4E+02 0.003 35.2 18.8 58 72-129 310-372 (877)
392 PF00244 14-3-3: 14-3-3 protei 78.9 39 0.00084 33.0 12.3 47 602-648 143-198 (236)
393 KOG2063 Vacuolar assembly/sort 78.2 1.5E+02 0.0032 34.9 18.5 62 39-103 310-379 (877)
394 KOG2114 Vacuolar assembly/sort 77.2 56 0.0012 37.4 13.9 244 389-654 342-596 (933)
395 PF11817 Foie-gras_1: Foie gra 76.6 81 0.0018 31.1 14.9 25 385-409 14-38 (247)
396 PF11817 Foie-gras_1: Foie gra 76.5 62 0.0014 31.9 13.3 78 568-645 155-244 (247)
397 PF13041 PPR_2: PPR repeat fam 76.4 8 0.00017 26.8 5.1 39 36-74 3-43 (50)
398 PF00244 14-3-3: 14-3-3 protei 76.4 50 0.0011 32.2 12.3 28 385-412 5-32 (236)
399 PRK11619 lytic murein transgly 75.9 1.5E+02 0.0033 33.9 32.5 124 557-688 247-374 (644)
400 COG5536 BET4 Protein prenyltra 75.7 40 0.00088 33.1 10.9 87 399-485 50-146 (328)
401 PF04190 DUF410: Protein of un 75.4 91 0.002 31.0 21.5 80 515-614 88-170 (260)
402 KOG2114 Vacuolar assembly/sort 74.9 51 0.0011 37.6 12.9 207 420-647 339-549 (933)
403 COG5159 RPN6 26S proteasome re 74.8 92 0.002 30.8 20.9 273 419-696 7-321 (421)
404 TIGR03504 FimV_Cterm FimV C-te 74.6 6.8 0.00015 26.4 4.0 25 623-647 3-27 (44)
405 PHA02537 M terminase endonucle 74.5 7.2 0.00016 37.5 5.7 93 45-137 92-212 (230)
406 KOG4014 Uncharacterized conser 74.3 71 0.0015 29.3 15.6 187 377-580 30-233 (248)
407 PF12739 TRAPPC-Trs85: ER-Golg 73.6 1.2E+02 0.0026 32.6 15.6 29 417-445 210-238 (414)
408 PF14863 Alkyl_sulf_dimr: Alky 73.6 14 0.0003 32.6 6.8 52 380-431 69-120 (141)
409 COG4455 ImpE Protein of avirul 72.6 32 0.00069 32.5 9.0 60 594-653 10-69 (273)
410 PF04190 DUF410: Protein of un 71.8 1.1E+02 0.0024 30.4 19.2 93 381-473 10-114 (260)
411 PF09670 Cas_Cas02710: CRISPR- 71.8 72 0.0016 33.8 13.1 18 631-648 253-270 (379)
412 COG5536 BET4 Protein prenyltra 71.4 1.1E+02 0.0024 30.2 16.3 178 434-611 51-257 (328)
413 smart00386 HAT HAT (Half-A-TPR 71.4 12 0.00026 22.6 4.6 22 466-487 4-25 (33)
414 smart00386 HAT HAT (Half-A-TPR 70.4 12 0.00026 22.6 4.5 27 396-422 2-28 (33)
415 TIGR03504 FimV_Cterm FimV C-te 69.3 10 0.00023 25.5 4.0 25 385-409 3-27 (44)
416 KOG0128 RNA-binding protein SA 68.3 2.3E+02 0.005 32.7 26.8 217 371-589 137-385 (881)
417 PF10255 Paf67: RNA polymerase 67.8 11 0.00024 39.7 5.9 61 553-613 124-192 (404)
418 PF02064 MAS20: MAS20 protein 67.0 19 0.00042 30.6 6.1 33 41-73 68-100 (121)
419 COG4455 ImpE Protein of avirul 66.6 39 0.00084 32.0 8.3 56 461-516 13-68 (273)
420 PF12854 PPR_1: PPR repeat 66.4 16 0.00034 22.9 4.2 26 619-644 7-32 (34)
421 KOG0546 HSP90 co-chaperone CPR 65.2 9.9 0.00021 38.5 4.6 64 591-654 281-344 (372)
422 PF12854 PPR_1: PPR repeat 64.9 18 0.00039 22.7 4.3 26 585-610 7-32 (34)
423 KOG4014 Uncharacterized conser 63.8 1.2E+02 0.0026 27.9 15.3 49 598-648 181-233 (248)
424 TIGR02710 CRISPR-associated pr 63.0 2E+02 0.0043 30.3 13.7 55 386-440 135-196 (380)
425 PF09205 DUF1955: Domain of un 62.5 51 0.0011 28.5 7.6 55 594-648 95-149 (161)
426 smart00299 CLH Clathrin heavy 62.3 1.1E+02 0.0024 26.8 14.9 31 463-493 21-51 (140)
427 COG3014 Uncharacterized protei 59.8 74 0.0016 32.3 9.3 200 502-747 40-275 (449)
428 KOG4279 Serine/threonine prote 58.2 1.7E+02 0.0038 33.1 12.6 101 379-480 199-318 (1226)
429 PF09797 NatB_MDM20: N-acetylt 58.0 71 0.0015 33.7 10.0 47 395-441 197-243 (365)
430 KOG0276 Vesicle coat complex C 57.7 1.9E+02 0.0042 32.0 12.6 99 391-511 596-694 (794)
431 PF13041 PPR_2: PPR repeat fam 56.3 49 0.0011 22.7 5.8 25 588-612 6-30 (50)
432 smart00299 CLH Clathrin heavy 54.6 1.5E+02 0.0032 25.9 15.2 35 427-461 19-53 (140)
433 PF09797 NatB_MDM20: N-acetylt 54.4 67 0.0015 33.9 9.1 42 466-507 200-241 (365)
434 KOG0687 26S proteasome regulat 54.2 53 0.0011 33.1 7.3 116 14-130 15-131 (393)
435 KOG0276 Vesicle coat complex C 54.0 1.8E+02 0.0038 32.3 11.6 132 383-543 616-747 (794)
436 PF11846 DUF3366: Domain of un 52.6 39 0.00084 31.8 6.3 49 602-651 128-176 (193)
437 cd02682 MIT_AAA_Arch MIT: doma 51.9 79 0.0017 24.3 6.5 29 381-409 6-34 (75)
438 cd02682 MIT_AAA_Arch MIT: doma 51.0 36 0.00078 26.1 4.5 19 92-110 36-54 (75)
439 KOG2561 Adaptor protein NUB1, 50.9 2.7E+02 0.0058 29.5 11.9 26 486-511 270-295 (568)
440 KOG0889 Histone acetyltransfer 50.1 9E+02 0.019 33.7 21.0 113 553-665 2738-2858(3550)
441 PF03745 DUF309: Domain of unk 50.0 1E+02 0.0022 22.7 7.2 58 624-682 4-61 (62)
442 KOG2758 Translation initiation 49.3 3E+02 0.0065 27.9 17.8 71 374-444 122-196 (432)
443 PRK12798 chemotaxis protein; R 49.2 3.5E+02 0.0076 28.7 22.6 215 392-611 92-321 (421)
444 PF01535 PPR: PPR repeat; Int 49.0 27 0.00058 20.7 3.1 18 593-610 8-25 (31)
445 PF04097 Nic96: Nup93/Nic96; 47.1 4.4E+02 0.0095 30.2 14.6 31 663-694 508-538 (613)
446 PF09205 DUF1955: Domain of un 46.9 1.2E+02 0.0025 26.4 7.2 51 563-613 98-148 (161)
447 PF07219 HemY_N: HemY protein 44.8 1E+02 0.0022 25.7 6.9 50 381-430 59-108 (108)
448 KOG1920 IkappaB kinase complex 44.7 6.7E+02 0.014 30.6 17.1 109 485-611 941-1052(1265)
449 KOG4279 Serine/threonine prote 44.4 1.2E+02 0.0026 34.3 8.8 101 414-515 200-319 (1226)
450 COG4259 Uncharacterized protei 43.8 1.6E+02 0.0034 24.0 7.1 55 91-145 59-114 (121)
451 COG5187 RPN7 26S proteasome re 43.2 3.5E+02 0.0077 27.0 13.1 29 449-477 115-143 (412)
452 cd02677 MIT_SNX15 MIT: domain 42.4 39 0.00084 26.0 3.7 10 55-64 6-15 (75)
453 PF01239 PPTA: Protein prenylt 42.2 64 0.0014 19.5 4.0 29 88-116 2-30 (31)
454 cd02680 MIT_calpain7_2 MIT: do 41.9 57 0.0012 25.1 4.4 16 428-443 19-34 (75)
455 cd02677 MIT_SNX15 MIT: domain 41.7 36 0.00078 26.2 3.4 15 117-131 20-34 (75)
456 PF04090 RNA_pol_I_TF: RNA pol 41.6 3.1E+02 0.0067 25.9 11.7 61 519-579 43-104 (199)
457 PRK15490 Vi polysaccharide bio 41.5 1.7E+02 0.0037 32.6 9.7 81 561-643 18-98 (578)
458 TIGR00756 PPR pentatricopeptid 41.3 52 0.0011 19.9 3.7 21 591-611 6-26 (35)
459 PF10952 DUF2753: Protein of u 41.2 1.4E+02 0.0031 25.4 6.8 58 384-441 4-76 (140)
460 PF15469 Sec5: Exocyst complex 41.2 3E+02 0.0064 25.5 10.7 25 42-66 92-116 (182)
461 PRK12798 chemotaxis protein; R 40.8 4.7E+02 0.01 27.8 23.6 229 410-646 79-322 (421)
462 TIGR02710 CRISPR-associated pr 40.5 4.7E+02 0.01 27.6 12.7 54 489-542 136-196 (380)
463 PF10938 YfdX: YfdX protein; 40.2 1.2E+02 0.0025 27.4 6.9 64 34-97 73-145 (155)
464 cd02681 MIT_calpain7_1 MIT: do 40.1 62 0.0013 25.0 4.4 18 48-65 18-35 (76)
465 KOG4521 Nuclear pore complex, 39.8 7.8E+02 0.017 30.0 17.8 119 457-579 991-1131(1480)
466 TIGR00985 3a0801s04tom mitocho 39.2 1.8E+02 0.0039 25.9 7.6 33 41-73 95-128 (148)
467 PF04090 RNA_pol_I_TF: RNA pol 38.4 3.5E+02 0.0076 25.6 11.4 31 454-484 46-76 (199)
468 KOG0686 COP9 signalosome, subu 37.1 5.3E+02 0.011 27.3 19.0 93 485-577 152-255 (466)
469 PF13226 DUF4034: Domain of un 37.0 4E+02 0.0086 26.8 10.6 35 534-568 116-150 (277)
470 cd02683 MIT_1 MIT: domain cont 37.0 1.6E+02 0.0035 22.8 6.3 22 626-647 13-34 (77)
471 KOG4056 Translocase of outer m 36.9 1.6E+02 0.0035 25.6 6.7 31 41-71 86-116 (143)
472 cd02679 MIT_spastin MIT: domai 36.8 62 0.0013 25.2 4.0 26 106-131 11-36 (79)
473 PHA02537 M terminase endonucle 36.6 45 0.00098 32.2 3.9 34 620-653 170-212 (230)
474 PF04212 MIT: MIT (microtubule 36.2 80 0.0017 23.7 4.6 26 106-131 8-33 (69)
475 KOG0687 26S proteasome regulat 35.4 5.1E+02 0.011 26.5 14.0 100 449-548 104-212 (393)
476 PF13812 PPR_3: Pentatricopept 34.9 85 0.0018 18.9 3.9 23 589-611 5-27 (34)
477 smart00101 14_3_3 14-3-3 homol 34.8 4.5E+02 0.0098 25.8 18.1 48 601-648 144-200 (244)
478 cd02683 MIT_1 MIT: domain cont 34.1 79 0.0017 24.5 4.2 17 48-64 18-34 (77)
479 PRK15490 Vi polysaccharide bio 33.7 2.4E+02 0.0051 31.6 9.2 80 528-609 19-98 (578)
480 PF04348 LppC: LppC putative l 33.6 14 0.0003 41.2 0.0 95 380-474 23-123 (536)
481 PF13226 DUF4034: Domain of un 33.4 5.1E+02 0.011 26.0 11.4 137 388-536 7-152 (277)
482 PF11846 DUF3366: Domain of un 32.9 1.1E+02 0.0025 28.6 6.1 48 86-134 128-175 (193)
483 KOG1920 IkappaB kinase complex 32.6 1E+03 0.022 29.2 19.9 13 496-508 893-905 (1265)
484 PF07219 HemY_N: HemY protein 32.4 1.4E+02 0.003 25.0 5.8 41 76-116 66-106 (108)
485 PF07163 Pex26: Pex26 protein; 32.3 4.1E+02 0.0089 26.5 9.5 127 558-685 42-183 (309)
486 smart00101 14_3_3 14-3-3 homol 31.9 5E+02 0.011 25.5 16.7 24 421-444 7-30 (244)
487 smart00671 SEL1 Sel1-like repe 31.8 90 0.002 19.2 3.7 26 104-129 2-31 (36)
488 PF10952 DUF2753: Protein of u 31.6 3.1E+02 0.0068 23.5 7.4 24 522-545 6-29 (140)
489 cd02681 MIT_calpain7_1 MIT: do 31.3 1.1E+02 0.0023 23.7 4.4 27 622-648 9-35 (76)
490 PF02184 HAT: HAT (Half-A-TPR) 31.0 84 0.0018 19.6 3.0 23 51-73 2-24 (32)
491 PF04212 MIT: MIT (microtubule 31.0 2.3E+02 0.0049 21.2 7.6 25 623-647 9-33 (69)
492 PF10475 DUF2450: Protein of u 30.9 5.7E+02 0.012 25.9 11.2 93 34-129 125-223 (291)
493 PF04097 Nic96: Nup93/Nic96; 30.3 8.8E+02 0.019 27.8 17.3 150 388-542 265-439 (613)
494 KOG4151 Myosin assembly protei 30.0 1.6E+02 0.0035 33.6 7.3 101 489-589 59-165 (748)
495 TIGR03362 VI_chp_7 type VI sec 29.5 6.2E+02 0.014 25.8 16.8 132 378-511 97-278 (301)
496 COG5187 RPN7 26S proteasome re 29.2 6E+02 0.013 25.5 15.2 29 415-443 115-143 (412)
497 PF08238 Sel1: Sel1 repeat; I 28.4 1.2E+02 0.0026 19.1 3.9 26 104-129 2-34 (39)
498 cd02680 MIT_calpain7_2 MIT: do 28.2 1.1E+02 0.0024 23.6 4.0 19 48-66 18-36 (75)
499 smart00777 Mad3_BUB1_I Mad3/BU 28.0 3.9E+02 0.0085 23.0 8.1 25 585-609 99-123 (125)
500 PF04348 LppC: LppC putative l 28.0 20 0.00043 40.0 0.0 96 415-510 24-125 (536)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-45 Score=365.05 Aligned_cols=287 Identities=23% Similarity=0.288 Sum_probs=216.3
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (781)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (781)
++.+.+...|.-+-+|..+|-.+..+|+...|+..|+++++++|+..++|+++|.+|...+.++.|+.+|.+++.+.|++
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~ 285 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH 285 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence 44555556666666777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 528 (781)
..++-++|.+|..+|..+-|+..|+++++..|+.++++.++|..+-..|+..+|..+|.+++.+.|+.+++..++|.++.
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003991 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (781)
++|.+++|...|.++++..|....+..++|.+|.++|++++|+.+|+.++.+.|...+++.++|..|..+|+...|+..|
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (781)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (781)
.+++..+|..++++.++|.+|...|+..+|+..|++++++.||.+++
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 77777777777777777777777777777777777777777777773
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-43 Score=355.34 Aligned_cols=409 Identities=20% Similarity=0.222 Sum_probs=377.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHH
Q 003991 42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE 120 (781)
Q Consensus 42 ~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 120 (781)
-.+-+|+-.+++..+..-..+|.++ .-..+|+|.|.++-..|++.+|+..++.+|+++|++++||+.+|.++...|+.+
T Consensus 88 l~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~ 167 (966)
T KOG4626|consen 88 LSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLE 167 (966)
T ss_pred ehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCc
Confidence 3455788889999999888899999 556679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCccccc
Q 003991 121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS 200 (781)
Q Consensus 121 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (781)
.|...|..| ++++|.+--
T Consensus 168 ~a~~~~~~a--------------lqlnP~l~c------------------------------------------------ 185 (966)
T KOG4626|consen 168 LAVQCFFEA--------------LQLNPDLYC------------------------------------------------ 185 (966)
T ss_pred ccHHHHHHH--------------HhcCcchhh------------------------------------------------
Confidence 999999999 333333221
Q ss_pred ccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCCc
Q 003991 201 SSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDD 280 (781)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (781)
T Consensus 186 -------------------------------------------------------------------------------- 185 (966)
T KOG4626|consen 186 -------------------------------------------------------------------------------- 185 (966)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhhH
Q 003991 281 FDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSN 360 (781)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (781)
T Consensus 186 -------------------------------------------------------------------------------- 185 (966)
T KOG4626|consen 186 -------------------------------------------------------------------------------- 185 (966)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 003991 361 EAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440 (781)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (781)
+...+|..+-..|+..+|..+|.++++.+|..+.+|.++|.++..+|+...|+..|++
T Consensus 186 ----------------------a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~e 243 (966)
T KOG4626|consen 186 ----------------------ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEE 243 (966)
T ss_pred ----------------------hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHH
Confidence 1112355667789999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520 (781)
Q Consensus 441 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 520 (781)
+++++|...++|+++|.+|...+.++.|+.+|.+++...|++..++-++|.+|+.+|..+-|+..|+++++..|+.+.++
T Consensus 244 AvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay 323 (966)
T KOG4626|consen 244 AVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAY 323 (966)
T ss_pred hhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 003991 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600 (781)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 600 (781)
.++|.++-..|+..+|..+|.+++.+.|+++++.+++|.+|..+|.+++|...|.++++..|....++.++|.+|.++|+
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHH
Q 003991 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEF 680 (781)
Q Consensus 601 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 680 (781)
+++|+.+|+.++.+.|..++++.++|..|..+|+...|+.+|.+|+.++|...+ ++.++|..+...|+..+|+
T Consensus 404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae-------AhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE-------AHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH-------HHhhHHHHhhccCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999988 4555566667789999999
Q ss_pred HHHhhhcCCCcccHHHHHHhc
Q 003991 681 CWFDIDGDIDPLFKEYWCKRL 701 (781)
Q Consensus 681 ~~~~~~~~~~p~~~~~~~~~~ 701 (781)
..|+.++.++|+|++.+++++
T Consensus 477 ~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 477 QSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred HHHHHHHccCCCCchhhhHHH
Confidence 999999999999999876654
No 3
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-41 Score=331.50 Aligned_cols=436 Identities=22% Similarity=0.276 Sum_probs=331.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-hhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 003991 33 MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111 (781)
Q Consensus 33 ~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~-~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 111 (781)
...+...+.+||++|++|+|++||++|+.||+++|+ |..|+|||.||..+|+|++.+++|++|++++|++++|++|++.
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 456778889999999999999999999999999977 9999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccC
Q 003991 112 AFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSEN 191 (781)
Q Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (781)
++..+|++++|+.+..-. |+... +.....+--..+.
T Consensus 192 A~E~lg~~~eal~D~tv~-------------------------------ci~~~-------------F~n~s~~~~~eR~ 227 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVL-------------------------------CILEG-------------FQNASIEPMAERV 227 (606)
T ss_pred HHHhhccHHHHHHhhhHH-------------------------------HHhhh-------------cccchhHHHHHHH
Confidence 999999999999655433 11110 0000000000000
Q ss_pred CCCCcccccccCCcccccccccCCCCCCCC-CCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcc
Q 003991 192 HNKSDICDSSSQSRDVSETCSKSSHDPDLC-NGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDA 270 (781)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (781)
.++..+.... ..+ ....+.+|..+++..+...|+..+...
T Consensus 228 Lkk~a~~ka~-----------------e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~---------------------- 268 (606)
T KOG0547|consen 228 LKKQAMKKAK-----------------EKLKENRPPVLPSATFIASYFGSFHADPKPL---------------------- 268 (606)
T ss_pred HHHHHHHHHH-----------------HhhcccCCCCCCcHHHHHHHHhhcccccccc----------------------
Confidence 0000000000 011 112233333333333332332111100
Q ss_pred ccccccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhh
Q 003991 271 SEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSF 350 (781)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (781)
...+...
T Consensus 269 ---------------------------------------------------------------~~~~~~k---------- 275 (606)
T KOG0547|consen 269 ---------------------------------------------------------------FDNKSDK---------- 275 (606)
T ss_pred ---------------------------------------------------------------ccCCCcc----------
Confidence 0000000
Q ss_pred hhHhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhC----CCC---------
Q 003991 351 KWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNE---GKYASAISIFDQILKED----PMY--------- 414 (781)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~----p~~--------- 414 (781)
.+....-+...+.. ..|..|...+.+..... ..+
T Consensus 276 ------------------------------sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~ 325 (606)
T KOG0547|consen 276 ------------------------------SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYM 325 (606)
T ss_pred ------------------------------chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHH
Confidence 11111111112222 24555555555443211 112
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (781)
+.++...|..++-.|++-.|...|+.++.++|.....|..+|.+|...++.++....|.++..++|+++++|+..|++++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 56788889999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574 (781)
Q Consensus 495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 574 (781)
-++++++|+.-|++++.++|++..++..++.+.++++++++++..|+.+.+..|+.++++...|.++..++++++|++.|
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCC------CHHHHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 575 QQVLYIDKR------FSKAYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 575 ~~al~~~~~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
.+++.+.|. ++..+...|.+.. -.+++..|+..++++++++|....++..||.+..++|+.++|+++|++++.
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999997 5555555554432 358999999999999999999999999999999999999999999999998
Q ss_pred hccCcHH
Q 003991 648 LELDSME 654 (781)
Q Consensus 648 ~~p~~~~ 654 (781)
+..+-.+
T Consensus 566 lArt~~E 572 (606)
T KOG0547|consen 566 LARTESE 572 (606)
T ss_pred HHHhHHH
Confidence 8655433
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=8.2e-38 Score=353.49 Aligned_cols=439 Identities=19% Similarity=0.206 Sum_probs=346.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 003991 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (781)
Q Consensus 35 ~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 114 (781)
.+...+..++.+|..|+|++|+.+|+++|.+.|++..|+|+|.||+++|+|++|+.+|++||+++|++.++++++|.+|.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34556688999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCC
Q 003991 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK 194 (781)
Q Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (781)
.+|++++|+..|..++.+.+........++...-. ..+.... ...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~a~~~~-----~~~----------------------------- 250 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK-KFAESKA-----KEI----------------------------- 250 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH-HHHHHHH-----HHH-----------------------------
Confidence 99999999999988866654443322221111000 0000000 000
Q ss_pred CcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccccc
Q 003991 195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN 274 (781)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (781)
+.......+....+..+...+...
T Consensus 251 --------------------------l~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 274 (615)
T TIGR00990 251 --------------------------LETKPENLPSVTFVGNYLQSFRPK------------------------------ 274 (615)
T ss_pred --------------------------HhcCCCCCCCHHHHHHHHHHccCC------------------------------
Confidence 000000000000000000000000
Q ss_pred ccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHh
Q 003991 275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM 354 (781)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (781)
... .
T Consensus 275 ----------~~~----------------------------~-------------------------------------- 278 (615)
T TIGR00990 275 ----------PRP----------------------------A-------------------------------------- 278 (615)
T ss_pred ----------cch----------------------------h--------------------------------------
Confidence 000 0
Q ss_pred hHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Q 003991 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ---VNEGKYASAISIFDQILKE---DPMYPEALIGRGTARAFQ 428 (781)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~ 428 (781)
.+.......+.....+..+|... ...++|++|+..|+++++. .|....++..+|.++..+
T Consensus 279 --------------~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~ 344 (615)
T TIGR00990 279 --------------GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344 (615)
T ss_pred --------------hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence 00000000111111222233222 3458899999999999986 477788999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003991 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508 (781)
Q Consensus 429 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (781)
|++++|+..|++++..+|....++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-
Q 003991 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA- 587 (781)
Q Consensus 509 a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~- 587 (781)
++.++|++..++..+|.++..+|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++.+.|.....
T Consensus 425 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY 504 (615)
T ss_pred HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998865332
Q ss_pred -----HHHHHHH-HHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 588 -----YHLRGLL-LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 588 -----~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
+...+.. +...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus 505 ~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 505 MNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 2233333 344799999999999999999999999999999999999999999999999999887655
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-33 Score=337.91 Aligned_cols=310 Identities=18% Similarity=0.138 Sum_probs=293.9
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (781)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (781)
.+.......|.++..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|++
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 668 (899)
T TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668 (899)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 44555667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 528 (781)
..++..++.++...|++++|+..++.+....|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++.
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 747 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 67788999999
Q ss_pred HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003991 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (781)
..|++++|+..+++++...|++..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|+ .+|+.++
T Consensus 748 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (781)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 687 (781)
++++...|+++..+..+|.++...|++++|+.+|+++++.+|.++. +++..+..+...|++++|...+.+..
T Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 827 EKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA-------IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-------HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999887 55666777888899999999987654
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-32 Score=331.87 Aligned_cols=320 Identities=19% Similarity=0.190 Sum_probs=185.0
Q ss_pred HHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q 003991 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450 (781)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 450 (781)
.......|.++..++.+|..+...|++++|+..++++++.+|........++..+...|++++|+..+.+.+...|.++.
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 466 (899)
T TIGR02917 387 AKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS 466 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcH
Confidence 33344445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003991 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (781)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 530 (781)
.+..+|.++...|++++|+.+|+++++..|.+..++..++.++...|++++|+..+++++...|.+..++..++.++...
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 546 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Confidence 55555555555556666666666555555555555555555555555666666666655555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (781)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (781)
|++++|+..+.+++..+|.+...+..++.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++
T Consensus 547 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred CCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56666666665555555555555555555555566666666666655555555555555666666666666666666666
Q ss_pred hhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCC
Q 003991 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID 690 (781)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 690 (781)
+++..|.++.++..+|.++...|++++|+..|+++++.+|++.. .++..+..+...+++++|+..++......
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE-------AQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 65555555555556666666666666666666666665555554 34444555555666666666665555555
Q ss_pred cccHHHH
Q 003991 691 PLFKEYW 697 (781)
Q Consensus 691 p~~~~~~ 697 (781)
|.....|
T Consensus 700 ~~~~~~~ 706 (899)
T TIGR02917 700 PKAALGF 706 (899)
T ss_pred cCChHHH
Confidence 5444443
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.6e-32 Score=325.43 Aligned_cols=316 Identities=16% Similarity=0.076 Sum_probs=270.3
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHccCHHHH
Q 003991 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--------------ALIGRGTARAFQRELEAA 434 (781)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~la~~~~~~g~~~~A 434 (781)
.+..++...|.++++++.+|.+++..|++++|+.+|+++++.+|++.. ....+|.++...|++++|
T Consensus 291 ~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA 370 (1157)
T PRK11447 291 ELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA 370 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence 556667778999999999999999999999999999999999887642 123557888899999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------------------
Q 003991 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI----------------------- 491 (781)
Q Consensus 435 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~----------------------- 491 (781)
+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|.+..++..++.
T Consensus 371 ~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 371 ERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999999999999999999988766554444
Q ss_pred -------------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH
Q 003991 492 -------------------VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552 (781)
Q Consensus 492 -------------------~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (781)
++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|.++.
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 3446789999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------HhhCCCCHHHHHHHH
Q 003991 553 AWGHLTQFYQDLANSEKALECLQQV----------------------------------------LYIDKRFSKAYHLRG 592 (781)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~a----------------------------------------l~~~~~~~~~~~~la 592 (781)
.++.++..+...+++++|+..++++ +...|.++..+..+|
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La 610 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence 8887777777777777776665532 224677888889999
Q ss_pred HHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHH
Q 003991 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYT 672 (781)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 672 (781)
.++...|++++|+..|+++++.+|+++.++..++.+|...|++++|+..|+++++..|+++.. +...|.++..
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~-------~~~la~~~~~ 683 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNT-------QRRVALAWAA 683 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHH-------HHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998874 4455666677
Q ss_pred HhchhhHHHHHhhhcCCCc
Q 003991 673 ASKINSEFCWFDIDGDIDP 691 (781)
Q Consensus 673 ~~~~~~A~~~~~~~~~~~p 691 (781)
.|++++|+..|+++....|
T Consensus 684 ~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CCCHHHHHHHHHHHhhhCc
Confidence 8899999999998877654
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.1e-32 Score=326.61 Aligned_cols=306 Identities=19% Similarity=0.180 Sum_probs=272.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH--------------
Q 003991 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-------------- 450 (781)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------- 450 (781)
..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++..
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 456899999999999999999999999999999999999999999999999999999999997642
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----
Q 003991 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL----- 525 (781)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~----- 525 (781)
....+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|++..++..++.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 223458888999999999999999999999999999999999999999999999999999999998776655444
Q ss_pred -------------------------------------HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Q 003991 526 -------------------------------------ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (781)
Q Consensus 526 -------------------------------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 568 (781)
++...|++++|+..|+++++.+|+++.+++.+|.+|...|+++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh-------------------------------------
Q 003991 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG------------------------------------- 611 (781)
Q Consensus 569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------------------------- 611 (781)
+|+..+++++...|+++.+++.++..+...+++++|+..++++
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998888888777777777777766543
Q ss_pred ---hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcC
Q 003991 612 ---LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD 688 (781)
Q Consensus 612 ---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 688 (781)
++..|.++..+..+|.++...|++++|+..|+++++.+|++++ +++.++..+...+++++|+..|+.+..
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~-------a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD-------ARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 2246888889999999999999999999999999999999998 555666777788999999999999998
Q ss_pred CCcccHHHH
Q 003991 689 IDPLFKEYW 697 (781)
Q Consensus 689 ~~p~~~~~~ 697 (781)
..|.....+
T Consensus 666 ~~p~~~~~~ 674 (1157)
T PRK11447 666 TANDSLNTQ 674 (1157)
T ss_pred cCCCChHHH
Confidence 888766553
No 9
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-33 Score=281.85 Aligned_cols=476 Identities=18% Similarity=0.168 Sum_probs=351.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 003991 36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (781)
Q Consensus 36 ~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 114 (781)
+...+.++|.+|+.|||+.|+.+|+.+|.++ +|+..|+||..+|..+|+|++|+++..+.++++|.++++|.++|.++.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 4567789999999999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCC
Q 003991 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK 194 (781)
Q Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (781)
-+|+|++|+..|.++|++.|....-..++.+.. ....+. ......+.++....+.+.
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~-~~~~~~----------------------~~~~~~p~~~~~l~~~p~ 138 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY-LEDYAA----------------------DQLFTKPYFHEKLANLPL 138 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh-hHHHHh----------------------hhhccCcHHHHHhhcChh
Confidence 999999999999999666666655444444333 111000 011122334444444444
Q ss_pred CcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccccc
Q 003991 195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN 274 (781)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (781)
....... +.++.+.......|..+..++.+.+......++. +....... ...+
T Consensus 139 t~~~~~~---~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~-~~~~~~~~----------------------~~~~- 191 (539)
T KOG0548|consen 139 TNYSLSD---PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK-GVDELLFY----------------------ASGI- 191 (539)
T ss_pred hhhhhcc---HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh-cCcccccc----------------------cccc-
Confidence 4444444 6777777777777777777777555544444433 22111000 0000
Q ss_pred ccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHh
Q 003991 275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM 354 (781)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (781)
........+. .+...+...+.+
T Consensus 192 ----~~~~~~~~p~-----------------------------------------------~~~~~~~~~~~d------- 213 (539)
T KOG0548|consen 192 ----EILASMAEPC-----------------------------------------------KQEHNGFPIIED------- 213 (539)
T ss_pred ----ccCCCCCCcc-----------------------------------------------cccCCCCCccch-------
Confidence 0000000000 000000000000
Q ss_pred hHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 003991 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA 434 (781)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 434 (781)
...+.+ .-......-.+|...+...++..|++.|..+++++ .+...+...+.+|+..|.+.++
T Consensus 214 ---~~ee~~-------------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c 276 (539)
T KOG0548|consen 214 ---NTEERR-------------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAEC 276 (539)
T ss_pred ---hHHHHH-------------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHh
Confidence 000000 00113445678999999999999999999999999 8888899999999999999999
Q ss_pred HHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003991 435 ISDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507 (781)
Q Consensus 435 ~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 507 (781)
+.....+++...... .+...+|..|...++++.|+.+|.+++..... ..+.......++++....
T Consensus 277 ~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e 348 (539)
T KOG0548|consen 277 IELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAE 348 (539)
T ss_pred hcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHH
Confidence 999998887654332 23444666777788999999999998765543 455566677788888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003991 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (781)
Q Consensus 508 ~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 587 (781)
...-++|.-...-...|..++..|+|..|+..|.+++..+|+++..|.+.|.+|..+|.+..|+...+.+++++|+...+
T Consensus 349 ~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 349 RKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred HHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 88888888777777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (781)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (781)
|...|.++..+.+|++|++.|+++++.+|++.++.-.+..|...+.......+.+++
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999999999999999999999999999998888888888875444444455555
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2.3e-31 Score=301.04 Aligned_cols=262 Identities=19% Similarity=0.253 Sum_probs=239.8
Q ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003991 428 QRELEAAISDFTEAIQS---NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504 (781)
Q Consensus 428 ~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 504 (781)
.++|++|+..|++++.. .|....++..+|.++...|++++|+..|++++.++|.....+..+|.++...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 36899999999999986 477788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003991 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (781)
Q Consensus 505 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 584 (781)
.|++++..+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++...|++
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH------HHHHHHH-HHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC------LYLRASC-YHAIGEYREAIKDYDAALDLELDSMEKFV 657 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (781)
+.++..+|.++...|++++|+..|++++.+.|.+... +...+.. +...|++++|+.+++++++++|++..
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~--- 543 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI--- 543 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH---
Confidence 9999999999999999999999999999999875332 2333333 34479999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991 658 LQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (781)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 696 (781)
++..+|..+...|++++|+.+|+++.++.+...+.
T Consensus 544 ----a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 544 ----AVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred ----HHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 55667888888999999999999999888865543
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=5.3e-29 Score=280.23 Aligned_cols=284 Identities=14% Similarity=0.042 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
+.++..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++..++..++ .+.
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~ 188 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFL 188 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHH
Confidence 3445556777777788888888888888888888888888888888888888888888877777777777666554 367
Q ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----
Q 003991 461 ALGESVEAIQDLSKALEFEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK---- 535 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~---- 535 (781)
..|++++|+..+++++...|. .......++.++...|++++|+..+++++...|+++.++..+|.++...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHH
Confidence 778888888888887777653 333445556777778888888888888888888888888888888888888775
Q ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (781)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (781)
|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 67888888888888888888888888888888888888888888888888888888888888888888888888888878
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 003991 616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665 (781)
Q Consensus 616 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 665 (781)
|+++..+..+|.++...|++++|+..|+++++.+|++....+..+...+.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD 398 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence 87776666677778888888888888888888887766544443333333
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.98 E-value=8.4e-28 Score=275.49 Aligned_cols=238 Identities=14% Similarity=0.055 Sum_probs=209.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (781)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 527 (781)
++.+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|++++...|.+ ..+..+|.++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHH
Confidence 66677888888877 788889999999999988654 36666777788999999999999987765554 4577889999
Q ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003991 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (781)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 607 (781)
...|++++|+.++++++...|.....+..++......|++++|+..|++++..+|+ +.++..+|.++.+.|++++|+..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999988888777777777889999999999999999996 89999999999999999999999
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (781)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 687 (781)
|++++..+|+++.++.++|.++...|++++|+..|+++++++|+++. +++.+|.++...|++++|+..|++++
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~-------a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA-------LIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 56677777788899999999999999
Q ss_pred CCCcccHHH
Q 003991 688 DIDPLFKEY 696 (781)
Q Consensus 688 ~~~p~~~~~ 696 (781)
.++|+....
T Consensus 705 ~l~P~~a~i 713 (987)
T PRK09782 705 DDIDNQALI 713 (987)
T ss_pred hcCCCCchh
Confidence 999986543
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.98 E-value=1.9e-28 Score=275.77 Aligned_cols=334 Identities=13% Similarity=0.023 Sum_probs=300.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCH
Q 003991 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (781)
Q Consensus 41 ~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 119 (781)
.-.-+.+++|++++|+..+..++... .++..+++.+.+.+..|++++|+..+++++.++|+++.++..+|.++..+|++
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 33457789999999999999999999 66677999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcccc
Q 003991 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (781)
Q Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (781)
++|+..|++++++.
T Consensus 127 ~~Ai~~l~~Al~l~------------------------------------------------------------------ 140 (656)
T PRK15174 127 ATVADLAEQAWLAF------------------------------------------------------------------ 140 (656)
T ss_pred HHHHHHHHHHHHhC------------------------------------------------------------------
Confidence 99999999993222
Q ss_pred cccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCC
Q 003991 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (781)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (781)
T Consensus 141 -------------------------------------------------------------------------------- 140 (656)
T PRK15174 141 -------------------------------------------------------------------------------- 140 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhh
Q 003991 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (781)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (781)
T Consensus 141 -------------------------------------------------------------------------------- 140 (656)
T PRK15174 141 -------------------------------------------------------------------------------- 140 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 003991 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (781)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (781)
|.++..+..+|.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..++
T Consensus 141 ------------------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 141 ------------------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLAR 201 (656)
T ss_pred ------------------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHH
Confidence 122445666788899999999999999999999999988887664 4788999999999999
Q ss_pred HHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCC
Q 003991 440 EAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA----AVEDLSACVKLDK 514 (781)
Q Consensus 440 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~a~~~~p 514 (781)
+++...|. .......++.++...|++++|+..+++++...|+++.++..+|.++...|++++ |+..|++++..+|
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 99998763 344455678889999999999999999999999999999999999999999986 8999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003991 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (781)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 594 (781)
+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++...|++...+..+|.+
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988878888999
Q ss_pred HHHCCCHHHHHHHHHHhhccCCCCH
Q 003991 595 LHGLGQHKKAIKDLSSGLGIDPSNI 619 (781)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~p~~~ 619 (781)
+...|++++|+..|+++++..|++.
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999999998864
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.6e-27 Score=252.37 Aligned_cols=463 Identities=15% Similarity=0.090 Sum_probs=369.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc-cchhh---hhhHHHHHHhhhCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHc
Q 003991 42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQD---ICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSAL 116 (781)
Q Consensus 42 ~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~---~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~ 116 (781)
-.+.+|..|+|+.+..++..+|.-. ..+.. ++..|.+|..+|+|++|...|.++++.+|++ .-+++.+|..|+..
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 3367899999999999999999887 43333 9999999999999999999999999999998 77999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCc
Q 003991 117 GRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSD 196 (781)
Q Consensus 117 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (781)
|+++.|...|++.+...|+....+..+..+........... +
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~------d-------------------------------- 397 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR------D-------------------------------- 397 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH------H--------------------------------
Confidence 99999999999999999999888877665554432000000 0
Q ss_pred ccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccccccc
Q 003991 197 ICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQ 276 (781)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (781)
....++.+ ++
T Consensus 398 ---------~a~~~l~K--------------------------~~----------------------------------- 407 (1018)
T KOG2002|consen 398 ---------KASNVLGK--------------------------VL----------------------------------- 407 (1018)
T ss_pred ---------HHHHHHHH--------------------------HH-----------------------------------
Confidence 00000000 00
Q ss_pred CCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhH
Q 003991 277 SSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLK 356 (781)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (781)
. ..+........++.++.......
T Consensus 408 -----------------------------------------------------~---~~~~d~~a~l~laql~e~~d~~~ 431 (1018)
T KOG2002|consen 408 -----------------------------------------------------E---QTPVDSEAWLELAQLLEQTDPWA 431 (1018)
T ss_pred -----------------------------------------------------h---cccccHHHHHHHHHHHHhcChHH
Confidence 0 00000000111111111100000
Q ss_pred HhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHHH
Q 003991 357 ETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-----DPMY-----PEALIGRGTARA 426 (781)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~-----~~~~~~la~~~~ 426 (781)
. -.........+. ....+..++.+...|..++..|++..|...|.+++.. +++. ....+++|.++.
T Consensus 432 s--L~~~~~A~d~L~--~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 432 S--LDAYGNALDILE--SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred H--HHHHHHHHHHHH--HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 0 001111111111 2234477999999999999999999999999999876 2222 235899999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003991 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506 (781)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 506 (781)
..++++.|.+.|..++...|...+++..+|.+....++..+|...+..++..+..++.++..+|.+++....+..|.+-|
T Consensus 508 ~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f 587 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKF 587 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHH
Confidence 99999999999999999999999999999988888999999999999999999999999999999999999999999988
Q ss_pred HHHHHhCC--CCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Q 003991 507 SACVKLDK--ENKSAYTYLGLALSS------------IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (781)
Q Consensus 507 ~~a~~~~p--~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 572 (781)
+..+.... .++.+...||+++++ .+.+++|+..|.+++..+|.+..+-..+|.++...|++.+|..
T Consensus 588 ~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 588 ETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHH
Confidence 87776532 456777888887764 4568899999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID--PSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (781)
Q Consensus 573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (781)
+|.++.+-..+++.+|.++|.||..+|+|..|++.|+.+++.. .+++.++..||.+++..|.+.+|...+.+|+.+.|
T Consensus 668 IFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 668 IFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 9999998877889999999999999999999999999999763 35789999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHH
Q 003991 651 DSMEKFVLQCLAFYQKEIALYT 672 (781)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~ 672 (781)
.++...++++.+....+.....
T Consensus 748 ~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 748 SNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred ccchHHhHHHHHHHHHHHHHHh
Confidence 9999999999998888766443
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=2.8e-27 Score=271.21 Aligned_cols=275 Identities=11% Similarity=-0.031 Sum_probs=248.7
Q ss_pred HHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003991 407 ILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484 (781)
Q Consensus 407 ~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 484 (781)
++...|. ++.+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|+++....|.+ .
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~ 543 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-E 543 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-H
Confidence 3334466 88899999999987 899999999999999999765 36667888889999999999999988876654 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Q 003991 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564 (781)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 564 (781)
.+..+|.++...|++++|+.++++++..+|.....+..++......|++++|+..++++++.+|+ ..++..+|.++.+.
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l 622 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC
Confidence 67889999999999999999999999999999888887777777889999999999999999997 99999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (781)
Q Consensus 565 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (781)
|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+.+|++
T Consensus 623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcc
Q 003991 645 ALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL 692 (781)
Q Consensus 645 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 692 (781)
+++++|++.. +.+..|.......++..+...+.++..++|.
T Consensus 703 Al~l~P~~a~-------i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 703 VIDDIDNQAL-------ITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHhcCCCCch-------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999877 6667777777778888888888777777664
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=3.9e-27 Score=271.08 Aligned_cols=396 Identities=13% Similarity=0.013 Sum_probs=258.9
Q ss_pred HhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 003991 47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (781)
Q Consensus 47 ~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 125 (781)
.-.|++++|+..|.+++... .....+.+.|.++.+.|++++|+..++++++++|+++.++..+|.++...|++++|+..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46899999999999999877 44446899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcccccccCCc
Q 003991 126 WEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSR 205 (781)
Q Consensus 126 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (781)
++++++..|+
T Consensus 106 l~~~l~~~P~---------------------------------------------------------------------- 115 (765)
T PRK10049 106 AKQLVSGAPD---------------------------------------------------------------------- 115 (765)
T ss_pred HHHHHHhCCC----------------------------------------------------------------------
Confidence 8888433222
Q ss_pred ccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCCcccCCC
Q 003991 206 DVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICN 285 (781)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (781)
T Consensus 116 -------------------------------------------------------------------------------- 115 (765)
T PRK10049 116 -------------------------------------------------------------------------------- 115 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhhHHHHhh
Q 003991 286 GPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRN 365 (781)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (781)
T Consensus 116 -------------------------------------------------------------------------------- 115 (765)
T PRK10049 116 -------------------------------------------------------------------------------- 115 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 003991 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445 (781)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (781)
++. ++.+|.++...|++++|+..++++++.+|+++.++..+|.++...+..+.|+..++++.. .
T Consensus 116 --------------~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~ 179 (765)
T PRK10049 116 --------------KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-T 179 (765)
T ss_pred --------------CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C
Confidence 234 555566666667777777777777777777776666667766666666667666665554 3
Q ss_pred CCcHH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHHhCCCCHHH-------HHH-HHHHHHhcCCHHHHHH
Q 003991 446 PSAGE-----AWKRRGQARA-----ALGES---VEAIQDLSKALEFEPNSADI-------LHE-RGIVNFKFKDFNAAVE 504 (781)
Q Consensus 446 p~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~~-------~~~-la~~~~~~~~~~~A~~ 504 (781)
|.... ....+..+.. ..+++ ++|+..++.+++..|.++.. ... ++ .+...|++++|+.
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~ 258 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVIS 258 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHH
Confidence 33200 1111111111 11223 55666666666543332211 111 22 2345566777777
Q ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 505 DLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLY 579 (781)
Q Consensus 505 ~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 579 (781)
.|+++++..|.. ..+...+|.++...|++++|+..|++++..+|.+ ......++.++...|++++|+..++++..
T Consensus 259 ~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 259 EYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 777766654332 2233335666667777777777777666665544 34455556666666777777777766666
Q ss_pred hCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991 580 IDKR---------------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (781)
Q Consensus 580 ~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (781)
..|. ...++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5542 1234556666666777777777777777777777777777777777777777777777777
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991 645 ALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (781)
Q Consensus 645 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 696 (781)
++.++|++.. .++..+......+++++|...++..+...|+....
T Consensus 419 al~l~Pd~~~-------l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 419 AEVLEPRNIN-------LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHhhCCCChH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 7777777666 34444445555666677777776666666666554
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.5e-26 Score=243.87 Aligned_cols=477 Identities=17% Similarity=0.161 Sum_probs=372.0
Q ss_pred HHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 52 WSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSALGRKEEALSVWEKG 129 (781)
Q Consensus 52 ~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a 129 (781)
++.|...|..++... +|+..+.++|.+.+..|+|..|+..|.++|-++|.. ++..+.+|.|+.++|+.+.|+..|+++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 699999999999999 888889999999999999999999999999999976 457788999999999999999999999
Q ss_pred HhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcccccccCCccccc
Q 003991 130 YEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSE 209 (781)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (781)
+++.|....++..|..++-..... ... .
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~-~s~-----~---------------------------------------------- 253 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDS-DSY-----K---------------------------------------------- 253 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccch-HHH-----H----------------------------------------------
Confidence 766665555544443333222100 000 0
Q ss_pred ccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCCcccCCCCCCc
Q 003991 210 TCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPID 289 (781)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (781)
..+......+
T Consensus 254 ----------------------~~~~ll~~ay------------------------------------------------ 263 (1018)
T KOG2002|consen 254 ----------------------KGVQLLQRAY------------------------------------------------ 263 (1018)
T ss_pred ----------------------HHHHHHHHHH------------------------------------------------
Confidence 0000000000
Q ss_pred ccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhhHHHHhhHHHH
Q 003991 290 KASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFC 369 (781)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (781)
.+.+.++.....++..++ . .++...-..+.
T Consensus 264 -------------------------------------------~~n~~nP~~l~~LAn~fy---f----K~dy~~v~~la 293 (1018)
T KOG2002|consen 264 -------------------------------------------KENNENPVALNHLANHFY---F----KKDYERVWHLA 293 (1018)
T ss_pred -------------------------------------------hhcCCCcHHHHHHHHHHh---h----cccHHHHHHHH
Confidence 011112221111111111 0 11122222222
Q ss_pred HHHhh--ccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 003991 370 VTRIS--KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (781)
Q Consensus 370 ~~~~~--~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 446 (781)
...+. ...+...+.+|.+|.++..+|+|++|..+|.++++.+|++ .-.++.+|.+++..|+++.|..+|++++...|
T Consensus 294 ~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p 373 (1018)
T KOG2002|consen 294 EHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP 373 (1018)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc
Confidence 22222 3456677889999999999999999999999999999998 77889999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH
Q 003991 447 SAGEAWKRRGQARAALG----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-----DKENK 517 (781)
Q Consensus 447 ~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~p~~~ 517 (781)
++.+....+|.+|...+ ..+.|..++.++++..|.+.++|..++.++....-+.. +..|.+|+.. .+-.+
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCH
Confidence 99999999999998886 67899999999999999999999999999876655554 9999999854 34457
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----Cccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003991 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (781)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 587 (781)
+.+.++|..++..|++.+|...|.+++.. +++. ....+++|.++...++++.|.+.|..++..+|....+
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ 532 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDA 532 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHH
Confidence 89999999999999999999999999876 1221 3358899999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 003991 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKE 667 (781)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 667 (781)
+..+|......++..+|...+..++..+..++.++..+|.++....++..|.+-|+..++.-....++|...+++.+...
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 99999888888999999999999999999999999999999999999999999888888765555666666555544332
Q ss_pred HH-------HHHHhchhhHHHHHhhhcCCCcccHHHHHHhcCc
Q 003991 668 IA-------LYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHP 703 (781)
Q Consensus 668 ~~-------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 703 (781)
.. .-..+.+++|+.+|.+++..+|.+- |+..+.+
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~--yAANGIg 653 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM--YAANGIG 653 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcCcchh--hhccchh
Confidence 22 3356778999999999999998654 5444444
No 18
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=5.1e-27 Score=241.82 Aligned_cols=300 Identities=21% Similarity=0.226 Sum_probs=273.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 003991 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (781)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (781)
.|......-+..+|+..|++.-...++...++..+|.+|+.+++|++|..+|+.+-...|-..+..-.+..+++.+.+--
T Consensus 325 ~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v 404 (638)
T KOG1126|consen 325 EGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV 404 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence 34444556678899999999778888888999999999999999999999999999999987777667777777777766
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (781)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (781)
+--.+.+..+..+|+.|+.|..+|.+|..+++++.|+++|+++++++|+...+|..+|.-+....++|.|..+|++|+..
T Consensus 405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 66667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 003991 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626 (781)
Q Consensus 547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 626 (781)
+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..|
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCccc
Q 003991 627 SCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLF 693 (781)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 693 (781)
.++..++++++|+..+++..++-|++.. +++-.|..+-..|+.+.|+..|..+.+++|.=
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~-------v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESS-------VFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHH-------HHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 9999999999999999999999999987 66666667777888899999998888888843
No 19
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-25 Score=222.26 Aligned_cols=260 Identities=19% Similarity=0.183 Sum_probs=229.5
Q ss_pred CHHHHHHHHHHHHHhC----CCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 003991 430 ELEAAISDFTEAIQSN----PSA---------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF 496 (781)
Q Consensus 430 ~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 496 (781)
.|..|...+.+..... ..+ ..++...|..++..|++-.|...|.+++.++|.+...+..+|.+|...
T Consensus 294 ~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~ 373 (606)
T KOG0547|consen 294 GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADE 373 (606)
T ss_pred hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhh
Confidence 5666666665554321 111 457788888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (781)
Q Consensus 497 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (781)
++.++....|.++..++|.++.+|+..|.+++-++++++|+.-|++++.++|++..++..++.+.+++++++++...|+.
T Consensus 374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee 453 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEE 453 (606)
T ss_pred hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhc
Q 003991 577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYH-AIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 577 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 649 (781)
++...|+.++++...|.++..++++++|++.|+.++.+.|. ++..+...|.+.. -.+++..|+.++++|++++
T Consensus 454 ~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D 533 (606)
T KOG0547|consen 454 AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD 533 (606)
T ss_pred HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999998 6666666555443 3589999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991 650 LDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (781)
Q Consensus 650 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 696 (781)
|.+.. ++-.+|.....+++.++|+..|+++..+.....+-
T Consensus 534 pkce~-------A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~ 573 (606)
T KOG0547|consen 534 PKCEQ-------AYETLAQFELQRGKIDEAIELFEKSAQLARTESEM 573 (606)
T ss_pred chHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHH
Confidence 99877 55666666777889999999999988876655443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=5.2e-25 Score=253.51 Aligned_cols=197 Identities=14% Similarity=0.002 Sum_probs=145.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHH
Q 003991 460 AALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN----KSAYTYLGLALSSIGEYK 534 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~g~~~ 534 (781)
...|++++|+..|+++++..|.. ..+...+|.++...|++++|+..|++++..+|.+ ......++.++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 34455555555555555543221 1122224555555555555555555555554443 233444555555556666
Q ss_pred HHHHHHHHHHhhCc-------------cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 003991 535 KAEEAHLKAIQLDR-------------NF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (781)
Q Consensus 535 ~A~~~~~~al~~~~-------------~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 599 (781)
+|+..++++....| ++ ..++..++.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 66666665555544 32 4577889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (781)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 656 (781)
++++|+..+++++..+|++..+++.+|.++...|++++|...++++++..|+++.+.
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999998643
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.2e-26 Score=237.23 Aligned_cols=285 Identities=18% Similarity=0.219 Sum_probs=269.6
Q ss_pred HHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 003991 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (781)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (781)
+..+....++....+..+|..|+..++|++|..+|+.+-+..|-..+..-....+++.+.+--+--.+.+..+..+|+.+
T Consensus 342 ~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sP 421 (638)
T KOG1126|consen 342 FEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSP 421 (638)
T ss_pred HHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCc
Confidence 34455667778899999999999999999999999999999998877777778888888776666666777889999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003991 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (781)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 529 (781)
+.|..+|.||..+++++.|+++|+++++++|....++..+|.-+.....++.|..+|+.|+..+|.+..+|+.+|.+|.+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003991 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (781)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (781)
+++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++...+..|.++...+++++|+..++
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE 581 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
+..++.|++..+++.+|.+|.++|+.+.|+..|.-|.+++|.-.+
T Consensus 582 eLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 582 ELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 999999999999999999999999999999999999999997644
No 22
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-24 Score=218.42 Aligned_cols=280 Identities=17% Similarity=0.154 Sum_probs=263.2
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (781)
-..+++.....+..++..++|.+..++++..++.+|-+..++...-.++...|+..+-...-.+.+...|+.+..|+..|
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 34678899999999999999999999999999999999888766555999999999988888999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 536 (781)
..|...|++.+|..+|.++..++|....+|...|..+...+..++|+.+|..|-++.|........+|.-|...++++-|
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003991 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-------RFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (781)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (781)
..+|.+|+.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+ .....+.++|.++.+++.+++|+.+|+
T Consensus 400 e~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 400 EKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999984322 245568999999999999999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (781)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 656 (781)
+++.+.|.++.++..+|.+|..+|+++.|+.+|.+++-++|++.-.-
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence 99999999999999999999999999999999999999999996543
No 23
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.94 E-value=1.3e-23 Score=198.58 Aligned_cols=331 Identities=15% Similarity=0.190 Sum_probs=268.7
Q ss_pred hHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHH
Q 003991 30 DSVMASAITAR--IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAY 106 (781)
Q Consensus 30 ~~~~~~~~~~r--~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 106 (781)
.+....+.-+| ..+.++|..|++.+|+..|-.||+.+ .+-.+++.||.+|+.+|+-.-|+.++.++|++.|++.-|.
T Consensus 30 ~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 30 ESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred HhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence 33333343344 67788999999999999999999999 6778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCc
Q 003991 107 ILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMS 186 (781)
Q Consensus 107 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (781)
+.+|.+++++|++++|..+|...|...|.+.... +...
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~------eaqs------------------------------------ 147 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL------EAQS------------------------------------ 147 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH------HHHH------------------------------------
Confidence 9999999999999999999999965444332110 0000
Q ss_pred ccccCCCCCcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccc
Q 003991 187 ETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHA 266 (781)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (781)
T Consensus 148 -------------------------------------------------------------------------------- 147 (504)
T KOG0624|consen 148 -------------------------------------------------------------------------------- 147 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccccccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhh
Q 003991 267 SRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRS 346 (781)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (781)
.++
T Consensus 148 -----------------------------------------------------------------------------kl~ 150 (504)
T KOG0624|consen 148 -----------------------------------------------------------------------------KLA 150 (504)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred hhhhhhHhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 347 KLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA 426 (781)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 426 (781)
. .. .-..+..+...++..|++..|+.....+++..|-++..+...+.||.
T Consensus 151 ~-----------~~-------------------e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 151 L-----------IQ-------------------EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred h-----------HH-------------------HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 0 00 01223445566788999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHH
Q 003991 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE------------RGIVNF 494 (781)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~~ 494 (781)
..|+...|+..+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|++..++-. -+.-..
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987544322 123345
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Q 003991 495 KFKDFNAAVEDLSACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA 570 (781)
Q Consensus 495 ~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 570 (781)
..++|.++++..++.++.+|..+. ....+..|+...|++.+|+..+.+++..+|++..++...+..|+....|+.|
T Consensus 281 e~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred hhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHH
Confidence 667888888888888888887543 3445677777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhCCCCHHHHH
Q 003991 571 LECLQQVLYIDKRFSKAYH 589 (781)
Q Consensus 571 ~~~~~~al~~~~~~~~~~~ 589 (781)
+..|+++.+.++++..+.-
T Consensus 361 I~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 361 IHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHhcCcccHHHHH
Confidence 8888888888887765544
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.3e-23 Score=226.19 Aligned_cols=309 Identities=17% Similarity=0.090 Sum_probs=266.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRR 455 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 455 (781)
.....+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 355677789999999999999999999999999999999999999999999999999999998854332 3578899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHc
Q 003991 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSI 530 (781)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~ 530 (781)
|.++...|++++|+..|.++++..|.+..++..++.++...|++++|+..+++++...|.+. ..+..+|.++...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999887653 3566789999999
Q ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Q 003991 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLS 609 (781)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~ 609 (781)
|++++|+..|+++++..|+...++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++|+..++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988876 4667889999999999999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHh----h
Q 003991 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFD----I 685 (781)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~----~ 685 (781)
++++..|+... +..++.++...|++++|+..++++++..|++.......... ......|+..+++..++ +
T Consensus 274 ~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~-----~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 274 RALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH-----LAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh-----hhccCCccchhHHHHHHHHHHH
Confidence 99999998654 48999999999999999999999999999987533222211 11111335555555544 3
Q ss_pred hcCCCcccH
Q 003991 686 DGDIDPLFK 694 (781)
Q Consensus 686 ~~~~~p~~~ 694 (781)
.+..+|.|.
T Consensus 348 ~~~~~p~~~ 356 (389)
T PRK11788 348 QLKRKPRYR 356 (389)
T ss_pred HHhCCCCEE
Confidence 445667654
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=3.9e-23 Score=201.90 Aligned_cols=283 Identities=16% Similarity=0.178 Sum_probs=257.2
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCcHHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQ--RELEAAISDFTEAIQSNPSAGEAWK 453 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~ 453 (781)
.+...+.-+..+..++.+|+++.|++++.-.-+.+.... .+-.++..+++.+ .++..|..+...++.++..++.++.
T Consensus 415 ~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~ 494 (840)
T KOG2003|consen 415 AELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT 494 (840)
T ss_pred hhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh
Confidence 445566778889999999999999999876655554432 3344555555553 4799999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003991 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533 (781)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 533 (781)
+.|.+-+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-+...+--++..+++.++.+|..+.+.
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 99999999999999999999999998888999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (781)
Q Consensus 534 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (781)
.+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+..-.+|..|....-+++|+.+|+++.-
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (781)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (781)
+.|+.......++.|+.+.|+|..|...|+..-...|.+.+-+..+
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 9999888889999999999999999999999999999998855443
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-22 Score=197.75 Aligned_cols=303 Identities=15% Similarity=0.087 Sum_probs=262.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 003991 387 RGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (781)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 465 (781)
++.++......++++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|-..+-.-....+++-.++-
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 344555556788888888888887 7888888889999999999999999999999999998777666777777777665
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (781)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (781)
.+---.-+.+..++.-.++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|+.|++
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 55556666777888878888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 003991 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625 (781)
Q Consensus 546 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 625 (781)
++|.+..+|+.+|..|..++...=|+-+|++++...|+++..|..||.||.+.++.++|+.+|.+++.....+..++..+
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhh-------ccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991 626 ASCYHAIGEYREAIKDYDAALDL-------ELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (781)
Q Consensus 626 a~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 696 (781)
|.+|.++++..+|..+|++.++. .|+...+.. -++.-....+++++|-.+...+...++.-.+.
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~-------fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eea 543 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL-------FLAEYFKKMKDFDEASYYATLVLKGETECEEA 543 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH-------HHHHHHHhhcchHHHHHHHHHHhcCCchHHHH
Confidence 99999999999999999999983 343333222 24555567788889888877777766554443
No 27
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5e-23 Score=207.85 Aligned_cols=260 Identities=18% Similarity=0.207 Sum_probs=240.0
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (781)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (781)
....+.+..|.++..+...-.+++..|+..+-..+-.+.++..|+.+..|+..|..|...|++.+|..+|.++..++|..
T Consensus 266 it~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f 345 (611)
T KOG1173|consen 266 ITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF 345 (611)
T ss_pred HhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc
Confidence 34566777888888776666699999999988888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 528 (781)
..+|...|..+...|..++|+.+|..|-++.|........+|.-|...++++.|..+|.+|+.+.|.++-++..+|.+.+
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY 425 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence 99999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 003991 529 SIGEYKKAEEAHLKAIQLDRN-------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 601 (781)
..+.|.+|..+|+.++..-+. ....+.++|.++.+.+.+++|+.++++++...|.++.++..+|.+|..+|++
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence 999999999999999854221 2456899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHH
Q 003991 602 KKAIKDLSSGLGIDPSNIECLYLRASC 628 (781)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~~~~~la~~ 628 (781)
+.|+++|.+++.+.|++..+-..|+.+
T Consensus 506 d~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 506 DKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 999999999999999987666666543
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.92 E-value=1.1e-20 Score=193.15 Aligned_cols=323 Identities=16% Similarity=0.095 Sum_probs=299.8
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (781)
..+.-..|+.-+..+...+.++-|+.+|..+++.+|.....|...+..-...|..++-..++++++...|.....|...+
T Consensus 512 eed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~a 591 (913)
T KOG0495|consen 512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYA 591 (913)
T ss_pred cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHH
Confidence 34446678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 536 (781)
..+...|+...|...+..+++.+|++.++|.....+.+...+++.|..+|.++....|. ..+|+.-+.+...+++.++|
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999887664 56788888888999999999
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (781)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (781)
+.+++.+++..|.....|..+|.++.+.++.+.|...|...++..|..+..|..++.+-.+.|+...|...++++.-.+|
T Consensus 671 ~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 671 LRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHH-----------------------HHHHHHHHHHHHH
Q 003991 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC-----------------------LAFYQKEIALYTA 673 (781)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-----------------------~~~~~~~~~~~~~ 673 (781)
++...|...-.+-.+.|+.+.|.....+|++-.|++...|.... -++...+...+..
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e 830 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSE 830 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988774322 2345567788899
Q ss_pred hchhhHHHHHhhhcCCCcccHHHHHHh
Q 003991 674 SKINSEFCWFDIDGDIDPLFKEYWCKR 700 (781)
Q Consensus 674 ~~~~~A~~~~~~~~~~~p~~~~~~~~~ 700 (781)
.+++.|..||.++...+|++.+.|++.
T Consensus 831 ~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred HHHHHHHHHHHHHHccCCccchHHHHH
Confidence 999999999999999999999998654
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=1.5e-20 Score=211.82 Aligned_cols=441 Identities=13% Similarity=-0.011 Sum_probs=308.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-hhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHH--HHH
Q 003991 36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK--GCA 112 (781)
Q Consensus 36 ~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~-~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l--g~~ 112 (781)
+...+..+--.+++|+|+.|+..|.++++.+|+. ......+.++...|++++|+..|++++ +|.+...+..+ |.+
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~l 111 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARA 111 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHH
Confidence 3455677778899999999999999999999654 343488888889999999999999999 66555555555 779
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCC
Q 003991 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENH 192 (781)
Q Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (781)
+..+|++++|+..|+++++..|+.+..+..+..+.-...
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~----------------------------------------- 150 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG----------------------------------------- 150 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC-----------------------------------------
Confidence 999999999999999998888888655432111000000
Q ss_pred CCCcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccc
Q 003991 193 NKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272 (781)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (781)
T Consensus 151 -------------------------------------------------------------------------------- 150 (822)
T PRK14574 151 -------------------------------------------------------------------------------- 150 (822)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhh
Q 003991 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKW 352 (781)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (781)
T Consensus 151 -------------------------------------------------------------------------------- 150 (822)
T PRK14574 151 -------------------------------------------------------------------------------- 150 (822)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 003991 353 DMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432 (781)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 432 (781)
. .. .....+..+....|..... ..++..+...++..+|+..++++++.+|++..++..+..++...|-..
T Consensus 151 -q----~~----eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 151 -R----GG----VVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred -C----HH----HHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence 0 00 0001233444455654443 555666666788877999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHH--HHHHHc---------C---CHHHHHHHHHHHHHhCCCCH-------HHHHHHHH
Q 003991 433 AAISDFTEAIQSNPSAGEAWKRRG--QARAAL---------G---ESVEAIQDLSKALEFEPNSA-------DILHERGI 491 (781)
Q Consensus 433 ~A~~~~~~al~~~p~~~~~~~~la--~~~~~~---------g---~~~~A~~~~~~al~~~p~~~-------~~~~~la~ 491 (781)
.|.+...+--.........+.... .-..+. + -.+.|+.-++..+...+..+ .+..-.-.
T Consensus 221 ~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 221 PALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 888766553222111111111111 111111 1 23456666666666333222 12334445
Q ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc------ccHHHHHHHHHHHHHc
Q 003991 492 VNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR------NFLEAWGHLTQFYQDL 564 (781)
Q Consensus 492 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~ 564 (781)
++...+++.+++..|+.+.... |-...+....|..|...+++++|+.+|..++...| ........|...|...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 5667788888888888766544 23445667778888888888888888888877542 2233346677778888
Q ss_pred CCHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 003991 565 ANSEKALECLQQVLYIDK---------------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629 (781)
Q Consensus 565 g~~~~A~~~~~~al~~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 629 (781)
+++++|..++++.....| +...+...++.++...|++.+|.+.+++.+...|.|+.++..+|.++
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888888888888776433 33456677788888888888888888888888888888888888888
Q ss_pred HHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (781)
Q Consensus 630 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 696 (781)
...|++.+|...++.+..++|++.. +.+.++.+...++++.+|....+......|+....
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~-------~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLI-------LERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8888888888888888888888876 55666666777788888877777777777776644
No 30
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.5e-22 Score=201.25 Aligned_cols=304 Identities=24% Similarity=0.354 Sum_probs=227.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 003991 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (781)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 464 (781)
-.+|...+..|+|+.|+.+|..++.++|.+...+.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..+.-+|+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 34566677777777777777777777777767777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH------------------------------------------------------
Q 003991 465 SVEAIQDLSKALEFEPNSADILHERG------------------------------------------------------ 490 (781)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la------------------------------------------------------ 490 (781)
|++|+..|.+.++.+|++..+...++
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 77777777777776666544444333
Q ss_pred ------------------------------------------------------------------HHHHhcCCHHHHHH
Q 003991 491 ------------------------------------------------------------------IVNFKFKDFNAAVE 504 (781)
Q Consensus 491 ------------------------------------------------------------------~~~~~~~~~~~A~~ 504 (781)
...+...++..|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 33444445555555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQV 577 (781)
Q Consensus 505 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (781)
.|..++.++ .+...+.+.+-+|+..|.+.+.+....++++..... ..+...+|..|...++++.|+.+|+++
T Consensus 246 ~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 246 HYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 666666655 555555566666666666666666655555544332 123334666788889999999999998
Q ss_pred HhhCC--------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991 578 LYIDK--------------------------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (781)
Q Consensus 578 l~~~~--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (781)
+.... .-..--...|..++..|+|..|+..|.+++..+|+++..|.++|.||.+
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK 404 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 75432 2222344568999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991 632 IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (781)
Q Consensus 632 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 696 (781)
+|.+..|+...+++++++|+... +|+.+|.+++.+.+|+.|+..|..+.+.+|..+++
T Consensus 405 L~~~~~aL~Da~~~ieL~p~~~k-------gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIELDPNFIK-------AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HhhHHHHHHHHHHHHhcCchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 99999999999999999999988 78888999999999999999999999999999887
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.1e-22 Score=198.16 Aligned_cols=278 Identities=18% Similarity=0.175 Sum_probs=256.4
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (781)
.|.+...-...|.+.+.+.++++|+..|+.+.+.+|-..+-.-....+++-..+-.+-.-..+.+..++.-.++....+|
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa 337 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA 337 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence 56777778888999999999999999999999999988877777888887777766666666777888888888889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 536 (781)
..|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+..+|+.+|..|..++...=|
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc---
Q 003991 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG--- 613 (781)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--- 613 (781)
+-+|++|+...|+++..|..+|.+|.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999998
Q ss_pred ----cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 614 ----IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 614 ----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
..|+...+...|+.-+.+.+++++|..+..+++.-++..-+
T Consensus 498 ~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ee 542 (559)
T KOG1155|consen 498 LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEE 542 (559)
T ss_pred hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHH
Confidence 45555678888999999999999999999999887655443
No 32
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.92 E-value=4e-22 Score=188.56 Aligned_cols=314 Identities=17% Similarity=0.221 Sum_probs=272.1
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (781)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (781)
..|.+++-.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|...|+-..|+..+.+++++.|+...+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991 456 GQARAALGESVEAIQDLSKALEFEPNSA---DI------------LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520 (781)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~------------~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 520 (781)
|.+++++|++++|..-|..++..+|++. ++ +......++..|++..|+.+....+++.|=+...+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 9999999999999999999999999552 22 22233445667899999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH---H-------
Q 003991 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH---L------- 590 (781)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~------- 590 (781)
...+.+|...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++-..+- .
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998754321 1
Q ss_pred --HHHHHHHCCCHHHHHHHHHHhhccCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 003991 591 --RGLLLHGLGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (781)
Q Consensus 591 --la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 664 (781)
-+......++|.++++..++.++.+|..+. ....+..|+..-|++.+|+....++++++|++.+ ++.
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~-------~l~ 345 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ-------VLC 345 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH-------HHH
Confidence 133345678899999999999999888543 4455778888899999999999999999999988 666
Q ss_pred HHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991 665 QKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (781)
Q Consensus 665 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 696 (781)
.++.++.....|+.|+.-|+++.+.+++....
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 77777777788888999898888888876554
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=3.8e-21 Score=207.04 Aligned_cols=280 Identities=19% Similarity=0.116 Sum_probs=247.2
Q ss_pred HHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 003991 367 KFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAI 442 (781)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (781)
...+..++...|.++.+++.+|..+...|++++|+..+++++...+.. ..++..+|.++...|++++|+..|.+++
T Consensus 55 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l 134 (389)
T PRK11788 55 IDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV 134 (389)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 335566677789999999999999999999999999999998754332 3578899999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 003991 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA-----DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (781)
Q Consensus 443 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~ 517 (781)
+..|.+..++..++.++...|++++|+..++++++..|.+. ..+..+|.++...|++++|+..++++++..|+..
T Consensus 135 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 135 DEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV 214 (389)
T ss_pred cCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence 99999999999999999999999999999999999887653 3566789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003991 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (781)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (781)
.++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|...|++++|+..+++++...|+... +..++.++.
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~ 293 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLE 293 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHH
Confidence 999999999999999999999999999998876 467889999999999999999999999999998754 488999999
Q ss_pred HCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHh
Q 003991 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA--IGEYREAIKDYDAALD 647 (781)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 647 (781)
..|++++|+..++++++..|++......++..+.. .|+..+|+..+++.++
T Consensus 294 ~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 294 EQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99999999999999999999987655455444422 4588888888877764
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=4e-21 Score=187.89 Aligned_cols=270 Identities=17% Similarity=0.135 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003991 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAAL--GESVEAIQDLSKALEFEPNSADILHERGIV 492 (781)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (781)
+.-...+-.+++.|+++.|++.+.-.-+.+... ..+-.++..+++.+ .++..|..+...++.++..++.++.+.|.+
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 344667888999999999999987665554433 33455666666664 378999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Q 003991 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (781)
Q Consensus 493 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 572 (781)
.+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+++|-+.-.+-.++.++++.++.+|..+.+..+|++
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (781)
Q Consensus 573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (781)
++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+...++|..|....-+++|+.+|+++--+.|+-
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcc
Q 003991 653 MEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL 692 (781)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 692 (781)
.. +.+..+.++...|+|..|+..|+..-...|.
T Consensus 660 ~k-------wqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 660 SK-------WQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HH-------HHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 65 3334455556677777777777655444444
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=2e-20 Score=199.22 Aligned_cols=301 Identities=15% Similarity=0.125 Sum_probs=238.8
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHH
Q 003991 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAW 452 (781)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 452 (781)
|.+.+.|..++....++|++.+|+-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|.. ....
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i 283 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI 283 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH
Confidence 33467888899999999999999999999999999999999999999999999999999999999999932 1233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC-------------
Q 003991 453 KRRGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKL--DKE------------- 515 (781)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~p~------------- 515 (781)
...+..+...++-+.|++.++.++.... ...+-+..++.++.....++.|.......... .++
T Consensus 284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~ 363 (895)
T KOG2076|consen 284 RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE 363 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence 4457778888888999999999998322 23456778899999999999999888766551 011
Q ss_pred -------------CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 516 -------------NKSA-YTYLGLALSSIGEYKKAEEAHLKAIQLDR-NFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (781)
Q Consensus 516 -------------~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (781)
+..+ ...++.+....++..+++..+..--...| +.+..+..++..+...|++.+|+.+|..+...
T Consensus 364 ~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 364 PNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred ccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 1122 44455555555566666655543333224 34789999999999999999999999999877
Q ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC--cHHHHH
Q 003991 581 DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD--SMEKFV 657 (781)
Q Consensus 581 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 657 (781)
.+ ++..+|+.+|.||..+|.+++|++.|++++...|++.++...|+.++.++|+.++|.+.++....-++. ...+|.
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 65 457799999999999999999999999999999999999999999999999999999999988733333 333455
Q ss_pred HHHHHHHHHHHHHHHHhchhh
Q 003991 658 LQCLAFYQKEIALYTASKINS 678 (781)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~ 678 (781)
......+.+...+...|+.++
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHH
Confidence 555566777777777777766
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.89 E-value=7.9e-23 Score=208.15 Aligned_cols=264 Identities=20% Similarity=0.225 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
..+.+|..++..|++++|++++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 4457799999999999999999766554 488999999999999999999999999999999999988888888888 7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003991 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEE 538 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~la~~~~~~g~~~~A~~ 538 (781)
..+++++|+.+++++.+..+ ++..+.....++...++++++...++++.... +.++..+..+|.++...|++++|+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988764 56777888889999999999999999987655 6788999999999999999999999
Q ss_pred HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC
Q 003991 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (781)
Q Consensus 539 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (781)
.|+++++.+|+++.+...++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.+|++++..+|++
T Consensus 168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 619 IECLYLRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
+.++..+|.++...|++++|..+++++++.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999998763
No 37
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.1e-19 Score=171.78 Aligned_cols=294 Identities=18% Similarity=0.132 Sum_probs=273.1
Q ss_pred HHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 003991 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (781)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (781)
+..+....++.......-|.++..+..+|.+++..|++.+|+..|+++.-.+|.+..+.-..|..+...|+++.-.....
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMD 290 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHH
Confidence 33445555677777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519 (781)
Q Consensus 440 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 519 (781)
..+........-|+--+...+...++..|+.+-++++..+|++..++...|.++...++.++|+-.|+.++.+.|...+.
T Consensus 291 ~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 291 YLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred HHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence 99998877888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT-QFYQ-DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (781)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (781)
|..+-.+|...|.+.+|.-.-+.+++..|.+..++..+| .++. .----++|.+++++++.+.|....+...++.++..
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999886 4433 33446899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 598 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
.|.++.++..+++.+...|+ ...+..+|.++...+.+++|+.+|..|+.++|++..
T Consensus 451 Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred hCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 99999999999999999888 578999999999999999999999999999999865
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=5.6e-18 Score=173.52 Aligned_cols=318 Identities=14% Similarity=0.087 Sum_probs=213.6
Q ss_pred HHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 003991 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (781)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (781)
+.+.....|.....|+..+......|+...|+.++.++++.+|++.++|+....+.+...+++.|..+|.++....|. .
T Consensus 573 lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-e 651 (913)
T KOG0495|consen 573 LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-E 651 (913)
T ss_pred HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-c
Confidence 444555566666666666666666666666666666666666666666666666666666666666666666664443 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003991 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (781)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 529 (781)
.+|+.-+.....+++.++|+..++++++..|.....|..+|+++...++.+.|...|...++..|..+..|..++.+-..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 45555556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003991 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (781)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (781)
.|..-.|...++++.-.+|.+...|.....+-.+.|+.+.|...+.++++..|.+...|..-..+.-.-++-..++..++
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666555554444444444344443333
Q ss_pred HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCC
Q 003991 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689 (781)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 689 (781)
....++.++...|.++....+++.|.++|.++++.+|++.++|.+.-..+. ..|.-+.-...+.+....
T Consensus 812 ----kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel-------~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 812 ----KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFEL-------RHGTEEDQKEVLKKCETA 880 (913)
T ss_pred ----hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHH-------HhCCHHHHHHHHHHHhcc
Confidence 334567888999999999999999999999999999999998765433322 345455556677788888
Q ss_pred CcccHHHHHH
Q 003991 690 DPLFKEYWCK 699 (781)
Q Consensus 690 ~p~~~~~~~~ 699 (781)
+|.+.+.|..
T Consensus 881 EP~hG~~W~a 890 (913)
T KOG0495|consen 881 EPTHGELWQA 890 (913)
T ss_pred CCCCCcHHHH
Confidence 9999988854
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=9.9e-20 Score=193.95 Aligned_cols=303 Identities=22% Similarity=0.236 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
...++..|..++..|++++|..++.++++.+|.++.+|+.+|.+|.++|+.+++....-.|-.++|.+.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 66788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHH
Q 003991 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGEYKK 535 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~ 535 (781)
++|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|... ......+..+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999999998321 222334666667777788
Q ss_pred HHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------------------
Q 003991 536 AEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLY---------------------------------- 579 (781)
Q Consensus 536 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------------------------- 579 (781)
|++.++.++... .....-+..++.+++....++.|.......-.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 888887777622 12233444555555555555555554433222
Q ss_pred -----------------------------hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHHHHHHH
Q 003991 580 -----------------------------IDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-NIECLYLRASC 628 (781)
Q Consensus 580 -----------------------------~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 628 (781)
..| +.+..+..++.++...|++.+|+.+|..+....+. +..+|+.+|.|
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 011 33566889999999999999999999999987664 56799999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCC
Q 003991 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID 690 (781)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 690 (781)
|..+|.+++|+.+|++++.+.|++.+ +...++..+..+|+.++|+..+.....-+
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D-------~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLD-------ARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchh-------hhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 99999999999999999999999999 55556666677889999999887655434
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=1.3e-19 Score=201.33 Aligned_cols=265 Identities=14% Similarity=0.001 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCcHH
Q 003991 383 FRLSRGIAQVNE---GKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPSAGE 450 (781)
Q Consensus 383 ~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~ 450 (781)
.++..|...+.. +.+++|+.+|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 455666655443 4567899999999999999999998888887644 3478899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003991 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (781)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 530 (781)
++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 99899999989999999999999999999999889999999999999999999999999999998887766777777788
Q ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003991 531 GEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (781)
Q Consensus 531 g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (781)
|++++|+..+++++... |+++.++..+|.++...|++++|...+.++....|....+...++..+...|+ +|...++
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~ 497 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIR 497 (553)
T ss_pred cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHH
Confidence 88999999998888775 67788888889998889999999999988888888888888888888888774 6777676
Q ss_pred HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (781)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (781)
+.++.....+.-....+.+|.-.|+.+.+..+ +++.+.+.
T Consensus 498 ~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 498 EFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 66654333332333377788888888888777 66665543
No 41
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.4e-17 Score=187.96 Aligned_cols=399 Identities=11% Similarity=-0.008 Sum_probs=306.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcccchhh--hhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 003991 46 LCSLRNWSKAIRILDSLLAQSYEIQD--ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (781)
Q Consensus 46 ~~~~g~~~~A~~~y~~ai~~~~~~~~--~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 123 (781)
+...|++++|+.++++++.. .+... +...|.++..+|+|++|+..++++++.+|+++.++..++.++...|+.++|+
T Consensus 78 ~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 78 AGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL 156 (822)
T ss_pred HHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 34679999999999999922 23333 4444779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcccccccC
Q 003991 124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ 203 (781)
Q Consensus 124 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (781)
..+++++...|..... ..+..+ ..
T Consensus 157 ~~l~~l~~~dp~~~~~-l~layL----------------~~--------------------------------------- 180 (822)
T PRK14574 157 KQATELAERDPTVQNY-MTLSYL----------------NR--------------------------------------- 180 (822)
T ss_pred HHHHHhcccCcchHHH-HHHHHH----------------HH---------------------------------------
Confidence 9999994433331110 000000 00
Q ss_pred CcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCCcccC
Q 003991 204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI 283 (781)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (781)
T Consensus 181 -------------------------------------------------------------------------------- 180 (822)
T PRK14574 181 -------------------------------------------------------------------------------- 180 (822)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhhHHHH
Q 003991 284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK 363 (781)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (781)
+ .....
T Consensus 181 ---------------------------------------------------------------------~-----~~~~~ 186 (822)
T PRK14574 181 ---------------------------------------------------------------------A-----TDRNY 186 (822)
T ss_pred ---------------------------------------------------------------------h-----cchHH
Confidence 0 00000
Q ss_pred hhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHc---------c---
Q 003991 364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI--GRGTARAFQ---------R--- 429 (781)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--~la~~~~~~---------g--- 429 (781)
.....+.+++...|.+.+.+..+...+...|-...|.++..+--.........++ ..+.-..+. +
T Consensus 187 -~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 -DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred -HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 0222566777889999999999999999999999998776653322111111111 111111111 1
Q ss_pred CHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Q 003991 430 ELEAAISDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNA 501 (781)
Q Consensus 430 ~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 501 (781)
-.+.|+..++..+...+..+ .+....-.++...|++.+++..|+.+.... |--..+....|..|+..+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 24567777777777433322 234445566778899999999999987655 2245678889999999999999
Q ss_pred HHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---------------ccHHHHHHHHHH
Q 003991 502 AVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------------NFLEAWGHLTQF 560 (781)
Q Consensus 502 A~~~~~~a~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~~~~la~~ 560 (781)
|+.+|+.++...| ........|...+...+++++|..++.+.....| +...+...++.+
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 9999999988653 2333457788999999999999999999988544 336778889999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003991 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK 640 (781)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 640 (781)
+...|++.+|++.+++.+...|.++.++..+|.++...|.+.+|...++.+..++|++..+...+|.++..+|++.+|..
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCcHHHH
Q 003991 641 DYDAALDLELDSMEKF 656 (781)
Q Consensus 641 ~~~~al~~~p~~~~~~ 656 (781)
....+++..|+++...
T Consensus 506 ~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 506 LTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHhhCCCchhHH
Confidence 9999999999998644
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=1.8e-21 Score=198.10 Aligned_cols=267 Identities=21% Similarity=0.208 Sum_probs=121.8
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003991 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487 (781)
Q Consensus 410 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 487 (781)
..|. ...+.+|.+++..|++++|++.+.+.+.. .|++...|..+|.+....++++.|+..|++++..++.++..+.
T Consensus 5 ~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~ 82 (280)
T PF13429_consen 5 FGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4455 23346799999999999999999766544 4888999999999999999999999999999999999888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcC
Q 003991 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDLA 565 (781)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g 565 (781)
.++.+ ...+++++|+.++.++.+..+ ++..+.....++...++++++...+.++.... +.++..|..+|.++.+.|
T Consensus 83 ~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 83 RLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred ccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 88888 799999999999999987664 46667778888999999999999999977655 677899999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (781)
Q Consensus 566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (781)
+.++|+.+|++++..+|+++.+...++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.+|+++
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence 99999999999999999999999999999999999999999999988888888999999999999999999999999999
Q ss_pred HhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991 646 LDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (781)
Q Consensus 646 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 687 (781)
++.+|+++. +....|.++...|+.++|+....++.
T Consensus 241 ~~~~p~d~~-------~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 241 LKLNPDDPL-------WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHSTT-HH-------HHHHHHHHHT----------------
T ss_pred ccccccccc-------cccccccccccccccccccccccccc
Confidence 999999998 55666677778888999988876553
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.86 E-value=2.1e-18 Score=184.70 Aligned_cols=298 Identities=14% Similarity=0.029 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQAR 459 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 459 (781)
.......|...+..|+++.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 445577899999999999999999999999999888889999999999999999999999999999885 5666679999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHH
Q 003991 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT----YLGLALSSIGEYKK 535 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~----~la~~~~~~g~~~~ 535 (781)
...|+++.|...++++.+..|+++.++..++.++...|++++|...+.+..+....++.... .........+..++
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988655443321 22222234445555
Q ss_pred HHHHHHHHHhhCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHCCCHHHHHHHHH
Q 003991 536 AEEAHLKAIQLDR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY--HLRGLLLHGLGQHKKAIKDLS 609 (781)
Q Consensus 536 A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~ 609 (781)
+...+.++....| +++..+..++..+...|++++|...++++++..|++.... ..........++...++..++
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 6678888888777 5899999999999999999999999999999999887532 223333445688999999999
Q ss_pred HhhccCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhh
Q 003991 610 SGLGIDPSNI--ECLYLRASCYHAIGEYREAIKDYD--AALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI 685 (781)
Q Consensus 610 ~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 685 (781)
++++..|+++ ..+..+|.++.+.|++++|.++|+ .+++..|++.. +...|..+...|+.++|..++++
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~--------~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND--------LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999 889999999999999999999999 68888998764 33557777788888888888766
Q ss_pred h
Q 003991 686 D 686 (781)
Q Consensus 686 ~ 686 (781)
+
T Consensus 396 ~ 396 (409)
T TIGR00540 396 S 396 (409)
T ss_pred H
Confidence 5
No 44
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=7.4e-19 Score=165.55 Aligned_cols=269 Identities=14% Similarity=0.056 Sum_probs=205.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 391 QVNEGKYASAISIFDQILKED---PM-------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
++...+...|-..+...++.+ |. +......+|.||+.+|.+.+|.+.++.+++..| .++.+..++.+|.
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ 267 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQ 267 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHH
Confidence 445566666665555555432 11 122234678888888888888888888887655 4667777888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (781)
...+...|+..+...++..|.+...+...+.++..++++++|.++|+.+++.+|.+.++...+|..|+..++.+-|+.+|
T Consensus 268 ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 268 RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888887777788888888888888888
Q ss_pred HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (781)
Q Consensus 541 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (781)
++.++..-.+++.+.++|.+.+..++++-++..|++++.... .-.++|+++|.+....|++..|..+|+-++..+++
T Consensus 348 RRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 348 RRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 888888888888888888888888888888888888876543 23567888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHH
Q 003991 618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC 660 (781)
Q Consensus 618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 660 (781)
+.+++.++|.+-.+.|+.++|..++..|-...|+-.+...+++
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 8888888888888888888888888888888887766655543
No 45
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.86 E-value=2.7e-18 Score=180.00 Aligned_cols=289 Identities=15% Similarity=0.113 Sum_probs=247.9
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 003991 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (781)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (781)
.-+.+.+..+..|.++.+.+.++..+..+++.+.|.++.+++++. ..+++.+|..++.++...+++.+|+...+.++..
T Consensus 463 slqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 344677888889999999999999999999999999999999999 5568899999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---------HHHHHHHHhcCCHHHHHHHHHHHHHh---
Q 003991 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL---------HERGIVNFKFKDFNAAVEDLSACVKL--- 512 (781)
Q Consensus 445 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---------~~la~~~~~~~~~~~A~~~~~~a~~~--- 512 (781)
.|+|.........+-...++.++|+..+...+........+- ...+......++..+|+..++++...
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 999888777777777889999999999988887654322222 22222333344555666655554322
Q ss_pred -----C-----C------CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Q 003991 513 -----D-----K------EN-------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569 (781)
Q Consensus 513 -----~-----p------~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 569 (781)
. | .. ...|...+..+...+..++|..++.++-.+.|..+..|+..|.++...|+..+
T Consensus 623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHH
Confidence 0 1 11 24567788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH--HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK--DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
|.+.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++.++|+.++|.++|..+++
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888888 99999999999999999999999999999999999999999
Q ss_pred hccCcHH
Q 003991 648 LELDSME 654 (781)
Q Consensus 648 ~~p~~~~ 654 (781)
+.+.+|-
T Consensus 783 Le~S~PV 789 (799)
T KOG4162|consen 783 LEESNPV 789 (799)
T ss_pred hccCCCc
Confidence 9998863
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=8.3e-19 Score=194.85 Aligned_cols=229 Identities=15% Similarity=0.113 Sum_probs=204.7
Q ss_pred HHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHH
Q 003991 418 LIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSADI 485 (781)
Q Consensus 418 ~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~ 485 (781)
++..|..+... +.+++|+.+|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 34455444332 4578999999999999999999999999887644 34899999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Q 003991 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (781)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 565 (781)
+..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777777888899
Q ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991 566 NSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (781)
Q Consensus 566 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (781)
++++|+..+++++... |+++.++..+|.++...|++++|...+.+.....|....++..++..|...|+ .|...+++
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ 498 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIRE 498 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHH
Confidence 9999999999999875 78899999999999999999999999999999999988899999999998884 77777776
Q ss_pred HHhh
Q 003991 645 ALDL 648 (781)
Q Consensus 645 al~~ 648 (781)
.++.
T Consensus 499 ll~~ 502 (553)
T PRK12370 499 FLES 502 (553)
T ss_pred HHHH
Confidence 6554
No 47
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.4e-19 Score=174.48 Aligned_cols=301 Identities=19% Similarity=0.226 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003991 34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (781)
Q Consensus 34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 112 (781)
-.+++.+..++.++++.+|..|+..|+.||+.+ .+...|.|||.++..+++|++|..++++.+.++|+..+++.+.|.|
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC 126 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence 355777788999999999999999999999999 6667789999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCC
Q 003991 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENH 192 (781)
Q Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (781)
+..+++.-+|...|+-. + +. . +.+.+ ..+
T Consensus 127 ~~a~~~~i~A~~~~~~~------~-----------~~-~-~anal-----~~~--------------------------- 155 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSK------Q-----------AY-K-AANAL-----PTL--------------------------- 155 (486)
T ss_pred hhhhHHHHHHHHHhhhh------h-----------hh-H-Hhhhh-----hhh---------------------------
Confidence 99999999999776633 0 00 0 00000 000
Q ss_pred CCCcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccc
Q 003991 193 NKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272 (781)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (781)
. .....
T Consensus 156 ---------------------------------------~---~~~~s-------------------------------- 161 (486)
T KOG0550|consen 156 ---------------------------------------E---KLAPS-------------------------------- 161 (486)
T ss_pred ---------------------------------------h---ccccc--------------------------------
Confidence 0 00000
Q ss_pred ccccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhh
Q 003991 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKW 352 (781)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (781)
T Consensus 162 -------------------------------------------------------------------------------- 161 (486)
T KOG0550|consen 162 -------------------------------------------------------------------------------- 161 (486)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 003991 353 DMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432 (781)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 432 (781)
....|....+.+..+.++...|++++|...--.++++++.+..+++..|.+++..++.+
T Consensus 162 ---------------------~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ 220 (486)
T KOG0550|consen 162 ---------------------HSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNAD 220 (486)
T ss_pred ---------------------ccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchH
Confidence 00002224455667889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003991 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (781)
Q Consensus 433 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 512 (781)
.|+..|++++.++|++..+-.. + ..|.--..+..-|.-.++.|++..|.++|..+|.+
T Consensus 221 ka~~hf~qal~ldpdh~~sk~~----~------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 221 KAINHFQQALRLDPDHQKSKSA----S------------------MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred HHHHHHhhhhccChhhhhHHhH----h------------------hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 9999999999999987542110 0 01111233444445555555555555555555555
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991 513 DKEN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (781)
Q Consensus 513 ~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 582 (781)
+|++ ...|.+++.+...+|+..+|+.-.+.++.+++....++...|.++..++++++|++.|+++++...
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5543 234455555555555555555555555555555555555555555555555555555555554433
No 48
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=9.2e-20 Score=185.51 Aligned_cols=255 Identities=18% Similarity=0.211 Sum_probs=182.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (781)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (781)
-+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 35678888888888888888998888899888999999998888888888899999999999988888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHH
Q 003991 464 ESVEAIQDLSKALEFEPNSADILHE-------RGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYK 534 (781)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~ 534 (781)
.-.+|+.++.+.+...|.....-.. ...-......+..-.+.|..+....| .++++...||.+|...|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8888888888888877643221110 00000111123334455555666666 56777777777777777777
Q ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc
Q 003991 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (781)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (781)
+|+++|+.|+...|++...|..||-.+....+.++|+..|++|+++.|....+++++|.+++.+|.|.+|+++|-.+|.+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred CCCC----------HHHHHHHHHHHHHhCCHHHH
Q 003991 615 DPSN----------IECLYLRASCYHAIGEYREA 638 (781)
Q Consensus 615 ~p~~----------~~~~~~la~~~~~~g~~~~A 638 (781)
.+.. ..+|-.|-.++..+++.+-+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 4431 13555555555555555533
No 49
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.2e-18 Score=167.41 Aligned_cols=304 Identities=17% Similarity=0.103 Sum_probs=274.5
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991 385 LSRGIAQVNEGKY--ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (781)
Q Consensus 385 ~~~a~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (781)
...+.+.+..++. ..+..++-.....-|+|...+..+|.+++..|++.+|+..|+++..++|......-..|.++...
T Consensus 200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~e 279 (564)
T KOG1174|consen 200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQE 279 (564)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhc
Confidence 3344444445544 44555566666778999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (781)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (781)
|+++.-.......+........-|+.-+..++..+++..|+.+-+++|..+|.+..++...|..+...|+.++|+-.|+.
T Consensus 280 g~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 280 GGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred cCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHH
Confidence 99999999999999988888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HCCCHHHHHHHHHHhhccCCCCHH
Q 003991 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG-LLLH-GLGQHKKAIKDLSSGLGIDPSNIE 620 (781)
Q Consensus 543 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~ 620 (781)
+..+.|...+.|..+..+|...|.+.+|...-+.++...|.++.++..+| .++. .-.--++|...+++++.+.|....
T Consensus 360 Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 360 AQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred HHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 99999999999999999999999999999999999999999999999886 4443 334568999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (781)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 696 (781)
+-..+|.++...|++++++..+++++...||+. ....+|...-..+.+.+|+.+|.+++.++|.....
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~--------LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN--------LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhccccH--------HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 999999999999999999999999999999874 45566777888899999999999999999988765
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=168.82 Aligned_cols=245 Identities=14% Similarity=0.127 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (781)
....+|.+|+..|-+.+|.+.++..++..| .++.+..++.+|....+...|+..+...+...|.+...+...++++..+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 345789999999999999999999999876 4889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (781)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (781)
+++++|.++|+.+++..|.+.++...+|.-|+..++.+-|+.+|++.+...-.+++.+.++|.+++..++++-++..|++
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH
Q 003991 543 AIQLDRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (781)
Q Consensus 543 al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (781)
++....+ -.++|+++|.+....|++.-|..+|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-.
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 9987542 3789999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 003991 620 ECLYLRASC 628 (781)
Q Consensus 620 ~~~~~la~~ 628 (781)
+..++++.+
T Consensus 464 E~~~Nl~~~ 472 (478)
T KOG1129|consen 464 EVTTNLQFM 472 (478)
T ss_pred ccccceeEE
Confidence 887777644
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.84 E-value=1.4e-17 Score=177.18 Aligned_cols=297 Identities=12% Similarity=0.033 Sum_probs=241.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCcHH-HHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-GTARAFQRELEAAISDFTEAIQSNPSAGE-AWKRRGQA 458 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~ 458 (781)
....+..|...+..|+|+.|.+.+.+..+..+ ++..++.+ +.+....|+++.|..++.++.+..|++.. .....+.+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 44567788999999999999988887665443 34554444 66669999999999999999999998854 33455899
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHc
Q 003991 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT--------YLGLALSSI 530 (781)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~--------~la~~~~~~ 530 (781)
+...|++++|+..++++.+..|+++.++..++.+|...|++++|+..+.+..+..+.++.... .+.......
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988766544222 222222223
Q ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (781)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (781)
.+.+.....++..-...|+++.+...++..+...|+.++|...++++++. +.++......+.+ ..++.++++..+++
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~ 319 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQ 319 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHH
Confidence 33444555555554556778999999999999999999999999999994 4456555555544 44999999999999
Q ss_pred hhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCC
Q 003991 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689 (781)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 689 (781)
.++..|+++..+..+|.++...|++++|..+|+++++..|++.. +...+..+...|+.++|..+|+++..+
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~--------~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD--------YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999753 455677778889999999999877553
No 52
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=2.6e-18 Score=174.87 Aligned_cols=230 Identities=17% Similarity=0.164 Sum_probs=133.3
Q ss_pred CCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 003991 395 GKYASAISIFDQILKEDP---M-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (781)
Q Consensus 395 g~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 470 (781)
+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455666777777765332 2 245667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Q 003991 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (781)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (781)
.|+++++++|++..++.++|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+++...+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 7777777777777777777777777777777777777777777766532111 122334556666666665554432211
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHH
Q 003991 551 LEAWGHLTQFYQDLANSEKALECLQQV-------LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-SNIECL 622 (781)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 622 (781)
.|. .+.++...|+...+ ..++.+ .++.|..+++|+.+|.++...|++++|+.+|+++++.+| +..+..
T Consensus 199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 111 23333344444322 122222 233344455566666666666666666666666666554 334444
Q ss_pred HHHHHHH
Q 003991 623 YLRASCY 629 (781)
Q Consensus 623 ~~la~~~ 629 (781)
+.+..+.
T Consensus 275 ~~~~e~~ 281 (296)
T PRK11189 275 YALLELA 281 (296)
T ss_pred HHHHHHH
Confidence 4443333
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=1.8e-17 Score=177.40 Aligned_cols=278 Identities=14% Similarity=0.024 Sum_probs=235.6
Q ss_pred HHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (781)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (781)
+....+..|...-.++..|..+...|+++.|..++.++.+..|++. .+....+.++...|+++.|...+++..+..|++
T Consensus 107 l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~ 186 (409)
T TIGR00540 107 IAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRH 186 (409)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3445566777788888999999999999999999999999999875 466667999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHhCC----CCHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH----ERGIVNFKFKDFNAAVEDLSACVKLDK----ENKSAY 520 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~ 520 (781)
+.++..++.++...|++++|...+.+..+....++.... ....-+...+..+++...+.++....| +++..+
T Consensus 187 ~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~ 266 (409)
T TIGR00540 187 KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALK 266 (409)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHH
Confidence 999999999999999999999999999988654444321 222222444555566678888888777 589999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHH
Q 003991 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDKRFS--KAYHLRGLLLH 596 (781)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~ 596 (781)
..++..+...|++++|.+.++++++..|++.... ..........++.+.+++.++++++..|+++ .....+|+++.
T Consensus 267 ~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~ 346 (409)
T TIGR00540 267 IALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM 346 (409)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 9999999999999999999999999999987532 2233334446889999999999999999999 88899999999
Q ss_pred HCCCHHHHHHHHH--HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 597 GLGQHKKAIKDLS--SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 597 ~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
+.|++++|.++|+ .+++..|++. .+..+|.++.++|+.++|.++|++++..
T Consensus 347 ~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 347 KHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999 6778888754 4669999999999999999999998764
No 54
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=3.1e-19 Score=181.74 Aligned_cols=233 Identities=18% Similarity=0.249 Sum_probs=208.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 003991 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (781)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 498 (781)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHcCCHHH
Q 003991 499 FNAAVEDLSACVKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEK 569 (781)
Q Consensus 499 ~~~A~~~~~~a~~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~ 569 (781)
-.+|+.++.+-+...|........ ..........+..-.+.|..+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999887754322110 00011111223455677777777788 689999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
|+.+|+.++...|++...|..||-.+..-.+.++|+..|++|+++.|....+++++|.+++.+|.|++|.++|-.||.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 003991 650 LD 651 (781)
Q Consensus 650 p~ 651 (781)
+.
T Consensus 529 ~k 530 (579)
T KOG1125|consen 529 RK 530 (579)
T ss_pred hc
Confidence 76
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=4.2e-18 Score=173.38 Aligned_cols=224 Identities=23% Similarity=0.247 Sum_probs=184.0
Q ss_pred HccCHHHHHHHHHHHHHhCC---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 003991 427 FQRELEAAISDFTEAIQSNP---S-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502 (781)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 502 (781)
..+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34577889999999996444 3 3678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (781)
Q Consensus 503 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 582 (781)
+..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++.... ...+....+++++|+..+.+.....+
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999874222 12234557899999999988775533
Q ss_pred CCHHHHHHHHHHHHHCCCHHH--HHHHHHHh----hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc-CcHH
Q 003991 583 RFSKAYHLRGLLLHGLGQHKK--AIKDLSSG----LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL-DSME 654 (781)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~~~--A~~~~~~a----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 654 (781)
... |. .+.+....|+..+ ++..+.+. .++.|..+++|+++|.++..+|++++|+.+|+++++++| +..+
T Consensus 197 ~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 197 KEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred ccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 222 22 3555556666543 33333332 345566778999999999999999999999999999997 5544
No 56
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.5e-18 Score=169.03 Aligned_cols=271 Identities=26% Similarity=0.314 Sum_probs=243.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
++.....|..++...+|.+|+..+..+++..|+++..|...+.+++..|+|++|....++.+.+.|.....+...+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHH------------HhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003991 461 ALGESVEAIQDLSKAL------------EFE------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 522 (781)
.+++..+|...++..- .+. |....+....+.++...+++++|...--..+++++.+..+++.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v 208 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV 208 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence 9998888876665221 111 2223456677889999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HH
Q 003991 523 LGLALSSIGEYKKAEEAHLKAIQLDRNF------------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SK 586 (781)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~ 586 (781)
.|.++...++.+.|+..|++++.++|+. ...+..-|+-.++.|++..|.++|..+|.++|++ ..
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 9999999999999999999999999976 3456778899999999999999999999999975 55
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
.|.+++.+..++|+..+|+...+.+++++|....++...|.|+..+++|++|.+.|+++++...+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 78899999999999999999999999999999999999999999999999999999999998766
No 57
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.81 E-value=2.2e-16 Score=181.84 Aligned_cols=293 Identities=11% Similarity=-0.029 Sum_probs=239.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQA 458 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 458 (781)
+...+..+...|.+.|++++|..+|++.. +.+...|..+...|...|++++|+..|.+..... ..+...+..+...
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45566677888999999999999998763 4567889999999999999999999999987643 2345678888899
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003991 459 RAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (781)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 537 (781)
+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...|...|+.++|+
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHH
Confidence 999999999999999998875 45677888999999999999999999998753 35678899999999999999999
Q ss_pred HHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc
Q 003991 538 EAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (781)
Q Consensus 538 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (781)
+.|++..... ..+...+..+...+...|..++|..+|+...+..+ .+...|..+...+.+.|++++|.+.+++. ..
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~ 490 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PF 490 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CC
Confidence 9999987653 22356677888888999999999999999876432 23567888999999999999999998875 23
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (781)
Q Consensus 615 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 687 (781)
.|+ ..+|..+...+...|+++.|...+++++++.|++... |..+...+...|++++|...++...
T Consensus 491 ~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~-------y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 491 KPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN-------YVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444 6778899999999999999999999999999988763 4445556667888999988876543
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.81 E-value=5.8e-16 Score=162.75 Aligned_cols=292 Identities=19% Similarity=0.182 Sum_probs=247.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSAGEAWKRRGQARAALGESVEAIQDLSK 474 (781)
Q Consensus 396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (781)
...++++.++++++.+|+|+.+.+.++.-|..+++.+.|..+..++++. ..+++.+|..++.++...+++.+|+...+.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3468899999999999999999999999999999999999999999999 456789999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH---------HHHHHHHcCCHHHHHHHHHHHHh
Q 003991 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---------LGLALSSIGEYKKAEEAHLKAIQ 545 (781)
Q Consensus 475 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~---------la~~~~~~g~~~~A~~~~~~al~ 545 (781)
++.-.|++.........+-...++.++|+..+...+.+-.....+... .+......++..+|+..++++..
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 999999988887778888888999999999988887764433222222 22222333455555555554432
Q ss_pred hC-------------c--------cc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 003991 546 LD-------------R--------NF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (781)
Q Consensus 546 ~~-------------~--------~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 599 (781)
.- | .. ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence 20 1 11 3567788999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH--HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchh
Q 003991 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK--DYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKIN 677 (781)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (781)
++++|.+.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++++|.+++ +||..|......|+.+
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e-------aW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE-------AWYYLGEVFKKLGDSK 771 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHccchH
Confidence 99999999999999999999999999999999999988888 99999999999999 6666677778889999
Q ss_pred hHHHHHhhhcCCCcccH
Q 003991 678 SEFCWFDIDGDIDPLFK 694 (781)
Q Consensus 678 ~A~~~~~~~~~~~p~~~ 694 (781)
.|..+|.-+.++++..+
T Consensus 772 ~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 772 QAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHhhccCCC
Confidence 99999998888776443
No 59
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.81 E-value=9.8e-18 Score=179.40 Aligned_cols=287 Identities=15% Similarity=0.080 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH--------------------HHHHHHHH
Q 003991 398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG--------------------EAWKRRGQ 457 (781)
Q Consensus 398 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------------------~~~~~la~ 457 (781)
..|..+|+.++..+|.+ ....|.+......|..|...+........++. ...+..+.
T Consensus 385 ~~as~~Ydn~lSaD~sn---~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~ 461 (1238)
T KOG1127|consen 385 SWASICYDNALSADASN---QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENS 461 (1238)
T ss_pred HHHHHHHHHhhcCChhh---hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHH
Confidence 34444455555444443 34455555566666666666655554431111 11111111
Q ss_pred H-----HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003991 458 A-----RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (781)
Q Consensus 458 ~-----~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 532 (781)
. -....+...|...|-+++.+++....++..+|.+|...-+...|..+|.+|.++++.+..+.-..+..|....+
T Consensus 462 ~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~ 541 (1238)
T KOG1127|consen 462 EFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEEST 541 (1238)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcccc
Confidence 1 12234588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991 533 YKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (781)
Q Consensus 533 ~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (781)
++.|......+-+..|-. ...|..+|..|...++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.+
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 999999977777776654 456777999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (781)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 687 (781)
+..++|.+....+..+.+...+|+|.+|+..+...+............++..+...+..++..|-..+|...+++.+
T Consensus 622 As~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 622 ASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred hHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999988777666667777777777777777776666666665554
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.81 E-value=1.5e-17 Score=150.39 Aligned_cols=205 Identities=20% Similarity=0.108 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003991 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (781)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 529 (781)
.+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++++.|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 35666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003991 530 IGEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (781)
Q Consensus 530 ~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 607 (781)
+|++++|...|++++.. .+.....+.++|.|..+.|+++.|..+|++++..+|+.+.....++..++..|+|..|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 77777777777777763 2344667777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
+++.....+-..+.+.....+-...|+-+.|-++=.+.....|...+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 77777766666777777777777777777777777777777777655
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.81 E-value=2.2e-17 Score=149.39 Aligned_cols=207 Identities=22% Similarity=0.213 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
..+.+.+|..|+..|++..|..-++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.++|++.+++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 46777888888888999999999999998898888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003991 461 ALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 538 (781)
.+|++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..++..|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888888864 344577888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003991 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (781)
Q Consensus 539 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 587 (781)
+++......+-....+.....+-...|+-+.+-++=.+.....|...+.
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 8887777766666666666677777788777777777777777765543
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=2.5e-17 Score=163.62 Aligned_cols=201 Identities=18% Similarity=0.139 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 528 (781)
...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 34555556666666666666666666666666656666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991 529 SIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 606 (781)
..|++++|+..+.+++... +.....+..+|.++...|++++|...+.+++...|+++.++..+|.++...|++++|+.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666532 33455666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
.+++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7777777767677777777777777777777777766665544
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.80 E-value=1.6e-16 Score=169.12 Aligned_cols=265 Identities=13% Similarity=0.020 Sum_probs=221.9
Q ss_pred HHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991 381 VDFRL-SRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (781)
Q Consensus 381 ~~~~~-~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (781)
+..++ ..+......|+++.|..+|.++.+.+|++..+. ...+.++...|+++.|+..++++.+..|+++.++..++.+
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~ 196 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA 196 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44444 446666999999999999999999999975443 4559999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003991 459 RAALGESVEAIQDLSKALEFEPNSADILH--------ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (781)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 530 (781)
|...|++++|+..+.+..+..+.++.... .+........+.+.....++......|+++.+...++..+...
T Consensus 197 ~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~ 276 (398)
T PRK10747 197 YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC 276 (398)
T ss_pred HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC
Confidence 99999999999999999988776544222 2222222333445555555555556678999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (781)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (781)
|+.++|...++++++. +.++......+.+ ..++.+++++.+++.++..|+++..+..+|.++...+++++|.++|++
T Consensus 277 g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 277 DDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred CCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999995 4455555445544 459999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
+++..|++ ..+..++.++.++|+.++|..+|++++.+.
T Consensus 354 al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 354 ALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999984 557789999999999999999999998864
No 64
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.80 E-value=9e-15 Score=170.01 Aligned_cols=268 Identities=14% Similarity=0.021 Sum_probs=231.6
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcHHHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWK 453 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~ 453 (781)
.+...|..+...|.+.|++++|+.+|.++.+.. .-+...|..+...+.+.|++++|...|.++... .| +...+.
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyn 583 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVG 583 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHH
Confidence 467888899999999999999999999987653 124778999999999999999999999999763 34 456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Q 003991 454 RRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIG 531 (781)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g 531 (781)
.+...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|+..|.+..... .-+...+..+...+...|
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 88899999999999999999999876 4467899999999999999999999999998763 224678888999999999
Q ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003991 532 EYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (781)
Q Consensus 532 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (781)
++++|..++..+.+.. +.+...+..+...|.+.|++++|...|++.... .| +...|..+...|.+.|++++|+++|
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998864 345788999999999999999999999988653 34 5778999999999999999999999
Q ss_pred HHhhcc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 609 SSGLGI--DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 609 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
+++... .|+ ...|..+...+.+.|++++|..++.++++..
T Consensus 743 ~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 743 SEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 988754 444 6778888899999999999999999998864
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=4.2e-17 Score=161.98 Aligned_cols=201 Identities=21% Similarity=0.241 Sum_probs=148.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (781)
.+..++.+|..++..|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 36677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003991 460 AALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 537 (781)
...|++++|+..+.+++... +.....+..+|.++...|++++|...+.+++..+|.++..+..+|.++...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888877643 3345566666777777777777777777777777666666666777777777777777
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (781)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (781)
..+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7776666666666666666666666666666666665555443
No 66
>PLN02789 farnesyltranstransferase
Probab=99.79 E-value=3.7e-17 Score=165.30 Aligned_cols=217 Identities=17% Similarity=0.134 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSKALEFEPNSADILHERGIVN 493 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (781)
..++-.+-.++...+.+++|+..+.+++.++|.+..+|...+.++..+| ++++++..+.++++.+|++..+|...+.++
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 3444444444555566666666666666666666666666666666665 456666666666666666666666666666
Q ss_pred HhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc---CCH-
Q 003991 494 FKFKDF--NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---ANS- 567 (781)
Q Consensus 494 ~~~~~~--~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~- 567 (781)
...|+. ++++.++.++++.+|.+..+|..++.++...|+++++++++.++++.+|.+..+|..++.++... |.+
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 555542 45566666666666666666666666666666666666666666666666666666666655543 212
Q ss_pred ---HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991 568 ---EKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (781)
Q Consensus 568 ---~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (781)
++++.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.++.++..++.+|..
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 345555555566666665566555555554 2334455555555555555555555555555543
No 67
>PLN02789 farnesyltranstransferase
Probab=99.79 E-value=5.2e-17 Score=164.23 Aligned_cols=221 Identities=15% Similarity=0.135 Sum_probs=198.5
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRR 455 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 455 (781)
.+...+++-..-.++...+.+++|+..+.++++.+|.+..+|..++.++..+| ++++++..+.+++..+|++..+|...
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 34445555444455677889999999999999999999999999999999998 68999999999999999999999999
Q ss_pred HHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Q 003991 456 GQARAALGES--VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI--- 530 (781)
Q Consensus 456 a~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--- 530 (781)
+.++...|+. ++++.++.++++.+|++..+|...+.++...|++++|++++.++++.+|.+..+|..++.++...
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 9999999874 78899999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCH----HHHHHHHHHHHhhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991 531 GEY----KKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (781)
Q Consensus 531 g~~----~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (781)
|.+ ++++.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.++.++..++.++..
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 333 578888899999999999999999999987 4566789999999999999999999999999975
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=5.3e-16 Score=146.77 Aligned_cols=270 Identities=17% Similarity=0.153 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHH
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQ 457 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~ 457 (781)
--|..|..++-..+.++|++.|..+++.+|...++.+.+|..+...|..+.|+..-+..+. .|+. ..+...+|.
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence 3466788888899999999999999999999999999999999999999999999887765 3443 347889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCC
Q 003991 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYLGLALSSIGE 532 (781)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~ 532 (781)
-|+..|-++.|...|....+....-..+...+..+|....+|++|++..++..++.+.. ...+..++..+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999988766667899999999999999999999999999998876 3567778888888999
Q ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 003991 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (781)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (781)
.+.|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|.. +.+...+..+|..+|+.++.+..+.++
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999976 667888999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 612 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
.+..++ +.+-..++..-....-.+.|..++.+-+...|+-..
T Consensus 276 ~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g 317 (389)
T COG2956 276 METNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG 317 (389)
T ss_pred HHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH
Confidence 999887 566677777777777789999999999999998543
No 69
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.78 E-value=9.5e-16 Score=176.61 Aligned_cols=265 Identities=10% Similarity=-0.043 Sum_probs=230.2
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRG 456 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 456 (781)
.+...|..+...|...|++++|+.+|++..+.. .-+...+..+..++...|++++|...+..+++.. +.+..++..+.
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 456788889999999999999999999987643 2246788899999999999999999999999875 55677888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Q 003991 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKK 535 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~ 535 (781)
..|.+.|++++|...|+++.+ .+...|..+...|.+.|+.++|++.|++..... .-+...+..+...+...|..++
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 999999999999999998754 366789999999999999999999999988753 2245667888889999999999
Q ss_pred HHHHHHHHHhhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991 536 AEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (781)
Q Consensus 536 A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (781)
|..+|+...+..+ .+...|..+..+|.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.+.
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 9999999986432 23567888999999999999999998864 2333 467799999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
..|++...|..++.+|...|++++|.+.++...+.
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999988765
No 70
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=5.5e-19 Score=166.69 Aligned_cols=107 Identities=29% Similarity=0.409 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHH
Q 003991 31 SVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK 109 (781)
Q Consensus 31 ~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 109 (781)
+....+++.|..||+++..++|++|+..|++||+++ .|+.+|+|||.+|.++|.|+.||++|+.||++||.+.++|.|+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 466788999999999999999999999999999999 8889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 003991 110 GCAFSALGRKEEALSVWEKGYEHALHQS 137 (781)
Q Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~ 137 (781)
|.+|+.+|++++|+..|++||++.|+..
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 9999999999999999999988888775
No 71
>PLN03077 Protein ECB2; Provisional
Probab=99.78 E-value=4.6e-15 Score=175.26 Aligned_cols=292 Identities=11% Similarity=-0.039 Sum_probs=240.7
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (781)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (781)
..+...+..+...|.+.|++++|.++|++..+ .+...|..+...|...|++++|+..|+++....+.+...+..+-.
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~ 497 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS 497 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence 34566777888899999999999999998643 356688899999999999999999999998765556667777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991 458 ARAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (781)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 536 (781)
.+...|..+.+.+.+..+++..- .+..+...+...|.+.|+.++|...|+.. +.+...|..+...|...|+.++|
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A 573 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMA 573 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHH
Confidence 88899999999999999887643 24556677889999999999999999886 56788999999999999999999
Q ss_pred HHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991 537 EEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (781)
Q Consensus 537 ~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (781)
+..|++..+. .|+ ...+..+...+...|..++|..+|+......+ .+...|..+..++.+.|++++|.+.+++.
T Consensus 574 ~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m- 651 (857)
T PLN03077 574 VELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM- 651 (857)
T ss_pred HHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence 9999998874 344 45566666788999999999999999884432 24678899999999999999999999986
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhh
Q 003991 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID 686 (781)
Q Consensus 613 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 686 (781)
...|+ +.+|..+-..+...|+.+.|....+++++++|++...+.. ++..|...|++++|....+..
T Consensus 652 ~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l-------l~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 652 PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL-------LCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH-------HHHHHHHCCChHHHHHHHHHH
Confidence 35565 7778888888888999999999999999999999885444 444556778888887766543
No 72
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.77 E-value=8.9e-14 Score=161.79 Aligned_cols=270 Identities=15% Similarity=0.038 Sum_probs=220.1
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHH
Q 003991 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAW 452 (781)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 452 (781)
..+...+..+...+.+.|++++|.++|.++... .|+ ...+..+...|.+.|++++|.+.|+.+.+.. +.+...|
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 345778889999999999999999999999763 343 6788888999999999999999999999876 4567889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 003991 453 KRRGQARAALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSS 529 (781)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~ 529 (781)
..+...|.+.|++++|+..|.++... .| +...+..+...+.+.|++++|..++..+.+.. +.+...+..+...|.+
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999876 44 46788899999999999999999999998865 3467889999999999
Q ss_pred cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003991 530 IGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKD 607 (781)
Q Consensus 530 ~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 607 (781)
.|++++|...|++..... ..+...|..+...|.+.|++++|+++|++..... ..+...|..+...+.+.|++++|..+
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999886542 2346789999999999999999999999887542 23467788888999999999999999
Q ss_pred HHHhhccCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 608 LSSGLGIDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 608 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
+.++++.... +...+..+-.++. +++++|....+..+..++.
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhcc
Confidence 9999875332 2344444332222 3577777776666655543
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.76 E-value=1.5e-14 Score=149.22 Aligned_cols=436 Identities=14% Similarity=0.110 Sum_probs=317.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCH
Q 003991 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (781)
Q Consensus 41 ~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 119 (781)
-+.-+.|..++|.+.++..+.++... .++..+...|..+..+|+-++|-..++.++..||...--|+-+|.++....+|
T Consensus 12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 12 RRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence 45667899999999999999999988 66777999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcccc
Q 003991 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (781)
Q Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (781)
++|+++|+.||.+.|++...+..+..+....... .+.
T Consensus 92 ~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~-~~~------------------------------------------ 128 (700)
T KOG1156|consen 92 DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY-EGY------------------------------------------ 128 (700)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-hhH------------------------------------------
Confidence 9999999999777777765554443333332211 000
Q ss_pred cccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCC
Q 003991 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (781)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (781)
T Consensus 129 -------------------------------------------------------------------------------- 128 (700)
T KOG1156|consen 129 -------------------------------------------------------------------------------- 128 (700)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhh
Q 003991 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (781)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (781)
T Consensus 129 -------------------------------------------------------------------------------- 128 (700)
T KOG1156|consen 129 -------------------------------------------------------------------------------- 128 (700)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHccCH
Q 003991 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED---PM-----YPEALIGRGTARAFQREL 431 (781)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~-----~~~~~~~la~~~~~~g~~ 431 (781)
...-...++..|..-..|+..|..++..|++..|..+.+...+.. |. ...+......+....|.+
T Consensus 129 -------~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~ 201 (700)
T KOG1156|consen 129 -------LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL 201 (700)
T ss_pred -------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence 001122345577888999999999999999999999999887755 33 234566777888889999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 003991 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV-EDLSACV 510 (781)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~a~ 510 (781)
++|++.+..--..--+........+.++..++++++|...|...+..+|++...+..+-.++..-.+.-+++ ..|...-
T Consensus 202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 999888776544444445566778999999999999999999999999999988888877776333444444 5555554
Q ss_pred HhCCCCHHHH-------------HHHHHHH---HHc-------------CCHHHHHHHHHHHH-------hhC-------
Q 003991 511 KLDKENKSAY-------------TYLGLAL---SSI-------------GEYKKAEEAHLKAI-------QLD------- 547 (781)
Q Consensus 511 ~~~p~~~~~~-------------~~la~~~---~~~-------------g~~~~A~~~~~~al-------~~~------- 547 (781)
+..|...... ..+..++ ... .+... ...+++.+ .-.
T Consensus 282 ~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 282 EKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred hcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCccc
Confidence 4444321000 0000000 000 11111 11222221 111
Q ss_pred -----ccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH
Q 003991 548 -----RNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (781)
Q Consensus 548 -----~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (781)
|.. ...++.++.-+-..|+++.|..+++.++...|..++.+...|.++...|++++|...+..+-+++-.|..
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 111 2345678888889999999999999999999999999999999999999999999999999999877666
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHH-HHHHH-HHHHHHHHHHhchhhHHHHHhhhc
Q 003991 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL-QCLAF-YQKEIALYTASKINSEFCWFDIDG 687 (781)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~ 687 (781)
+-..-|....+.++.++|.+...+.-+..-+-..-... .|+++ ..-|.+++.++++.+|+.-|....
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 66678888999999999999888776655322222222 22222 244788888888888877665443
No 74
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.76 E-value=2.9e-16 Score=168.29 Aligned_cols=286 Identities=14% Similarity=0.118 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 003991 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (781)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (781)
..|..+|..+...+++..|+..|+.++..+|.+..+|..+|.+|...|.+..|++.|.++..++|.+..+.+..+.+...
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------C-CCCHHHHHHHHHH
Q 003991 462 LGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACVKL-------D-KENKSAYTYLGLA 526 (781)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------~-p~~~~~~~~la~~ 526 (781)
.|.|.+|+..+...+...... .+++...+..+...|-..+|..+++++++. . -++...|..++.+
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 999999999998888765433 344555555555566666677777666543 1 2233333333332
Q ss_pred HHH-----------------------cCCH---H---HHHHHHHHHHhhCcccHHHHHHHHHHHHH--------cCCHHH
Q 003991 527 LSS-----------------------IGEY---K---KAEEAHLKAIQLDRNFLEAWGHLTQFYQD--------LANSEK 569 (781)
Q Consensus 527 ~~~-----------------------~g~~---~---~A~~~~~~al~~~~~~~~~~~~la~~~~~--------~g~~~~ 569 (781)
+.- .+.. + -+.+++-..+.... .+..|+++|..|++ ..+...
T Consensus 723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 211 1111 1 12233333333222 26678889888776 234458
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
|+.++.+++++..++...|..||.+ ...|++.-|..+|-+.+...|.....|.++|.++....+++-|...|.++..++
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcC
Confidence 9999999999999999999999988 666899999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHH
Q 003991 650 LDSMEKFVLQCLAFYQKEIA 669 (781)
Q Consensus 650 p~~~~~~~~~~~~~~~~~~~ 669 (781)
|.+...|...++..-..|..
T Consensus 881 P~nl~~WlG~Ali~eavG~i 900 (1238)
T KOG1127|consen 881 PLNLVQWLGEALIPEAVGRI 900 (1238)
T ss_pred chhhHHHHHHHHhHHHHHHH
Confidence 99988766665555444433
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=7.2e-15 Score=140.34 Aligned_cols=304 Identities=16% Similarity=0.110 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 003991 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (781)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (781)
+-.+.+|-..+..-.|++|++.|.+++..+|+....-..+|.||+++.-|+-+.+.+.--+...|+++-+...++...++
T Consensus 152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 152 EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFR 231 (557)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhh
Confidence 45566777888888999999999999999999888888999999999999999999999999999998888777766655
Q ss_pred c--CCHHH----------------HHHHHH----------HHHHhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003991 462 L--GESVE----------------AIQDLS----------KALEFEPN----SADILHERGIVNFKFKDFNAAVEDLSAC 509 (781)
Q Consensus 462 ~--g~~~~----------------A~~~~~----------~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (781)
+ |+..+ +...++ -+++.-|. -|++..++...|.++++.++|+...+.
T Consensus 232 l~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd- 310 (557)
T KOG3785|consen 232 LINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD- 310 (557)
T ss_pred hhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-
Confidence 4 22211 111111 11222221 267888999999999999999988764
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ---LDR------NFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (781)
Q Consensus 510 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (781)
++|..|.-+...|.+....|+--...+.+..+-+ +-. +.......++.+++-..++++.+.+++..-..
T Consensus 311 --l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785|consen 311 --LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred --cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999886555555444332 211 22344567788888888999999999888888
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (781)
Q Consensus 581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (781)
..++....+++|.+....|+|.+|.+.|-+.-...- +.......+|.||...|..+-|+..+-+. + ++.+....+
T Consensus 389 F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~-t~~e~fsLL 464 (557)
T KOG3785|consen 389 FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---N-TPSERFSLL 464 (557)
T ss_pred hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---C-CchhHHHHH
Confidence 888888999999999999999999999987765542 33445567999999999999999887542 2 222222211
Q ss_pred HHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHH
Q 003991 660 CLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYW 697 (781)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 697 (781)
--.+..+|..++|--|...|+....++|. .++|
T Consensus 465 ----qlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW 497 (557)
T KOG3785|consen 465 ----QLIANDCYKANEFYYAAKAFDELEILDPT-PENW 497 (557)
T ss_pred ----HHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc
Confidence 12244455555555555566666666774 3445
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.74 E-value=3.8e-14 Score=146.35 Aligned_cols=282 Identities=17% Similarity=0.154 Sum_probs=152.5
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---
Q 003991 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--- 445 (781)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 445 (781)
|+..++...|++...+..++....+.++++.....-.+.++..|..-..|+..+..+...|++..|....+...+..
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 44455555555555555555555555555555555555555555555555555555555555555555554444432
Q ss_pred CCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991 446 PSA-----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520 (781)
Q Consensus 446 p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 520 (781)
|.. .........+....|.+++|++.+..--..--+........+.++..++++++|...|...+..+|++...+
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 211 123333344444455555555444433222222233444455555566666666666666666666655555
Q ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHhhCcccHHHHHHHHH--------------H---HHHc-------------CCHHH
Q 003991 521 TYLGLALSSIGEYKKAE-EAHLKAIQLDRNFLEAWGHLTQ--------------F---YQDL-------------ANSEK 569 (781)
Q Consensus 521 ~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~la~--------------~---~~~~-------------g~~~~ 569 (781)
..+-.++..-.+--+++ ..|...-+..|... +...++. + .+.. .+..+
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k 335 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEKYPRHE-CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK 335 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH
Confidence 55544443222222233 33333333322210 0000000 0 0000 01110
Q ss_pred HHHHHHHHHh-------hC------------CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 003991 570 ALECLQQVLY-------ID------------KRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (781)
Q Consensus 570 A~~~~~~al~-------~~------------~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 628 (781)
...+++.+. -. |.. .+.++.++.-+...|+++.|..+++.|+...|.-++.+...|.+
T Consensus 336 -~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI 414 (700)
T KOG1156|consen 336 -VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARI 414 (700)
T ss_pred -hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 012222211 00 111 23456678888999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhccCc
Q 003991 629 YHAIGEYREAIKDYDAALDLELDS 652 (781)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~p~~ 652 (781)
+...|+.++|..++..+.+++-.|
T Consensus 415 ~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 415 FKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred HHhcCChHHHHHHHHHHHhccchh
Confidence 999999999999999999997543
No 77
>PLN03077 Protein ECB2; Provisional
Probab=99.73 E-value=3.4e-14 Score=167.96 Aligned_cols=298 Identities=10% Similarity=-0.027 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
..+..+-..+...|+++.|.+++..+.+... .+..++..+...|.+.|++++|...|++..+ .+...|..+...|.
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~ 466 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLR 466 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHH
Confidence 3444444567778888888888888887643 3456777888888888888888888887643 34567788888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 003991 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK-ENKSAYTYLGLALSSIGEYKKAEEA 539 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~ 539 (781)
..|+.++|+..|+++....+.+...+..+-..+...|..+.+.+.+..+++..- .+......+...|.+.|++++|...
T Consensus 467 ~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~ 546 (857)
T PLN03077 467 LNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546 (857)
T ss_pred HCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence 888888888888888765455666677777778888888888888888877642 3345566788999999999999999
Q ss_pred HHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc---
Q 003991 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--- 614 (781)
Q Consensus 540 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 614 (781)
|... +.+...|..+...|...|+.++|+..|++.... .|+ ...+..+-..+.+.|..++|..+|+.+.+.
T Consensus 547 f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 547 FNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 9886 567889999999999999999999999998764 454 555666777899999999999999998843
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccH
Q 003991 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFK 694 (781)
Q Consensus 615 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 694 (781)
.|+ ...|..+..++.+.|++++|.+.+++. .+.|+. ..|..+ -..+...++.+.+....++..+++|+..
T Consensus 622 ~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~-~~~~aL-------l~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 622 TPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP-AVWGAL-------LNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred CCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH-HHHHHH-------HHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 343 678999999999999999999999886 356652 323222 2233446777778777878888999876
Q ss_pred HHH
Q 003991 695 EYW 697 (781)
Q Consensus 695 ~~~ 697 (781)
.+|
T Consensus 692 ~~y 694 (857)
T PLN03077 692 GYY 694 (857)
T ss_pred chH
Confidence 664
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.73 E-value=8.9e-16 Score=161.68 Aligned_cols=243 Identities=19% Similarity=0.206 Sum_probs=159.9
Q ss_pred HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003991 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443 (781)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (781)
......|........+|..|..+|+|+.|+..|+.+++. .|.-.....
T Consensus 190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~------------------------ 245 (508)
T KOG1840|consen 190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLN------------------------ 245 (508)
T ss_pred hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHH------------------------
Confidence 334456666666666777777777777777777777765 222222223
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--
Q 003991 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-- 513 (781)
Q Consensus 444 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 513 (781)
.+|.+|..++++.+|+..|++++.+ +|....++.+||.+|...|++.+|..++++++++.
T Consensus 246 ----------~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 246 ----------ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred ----------HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555443 11223345555555555555555555555555432
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 514 ------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (781)
Q Consensus 514 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 579 (781)
|.-...+..++.++..++++++|+.++++++++. +.-+..+.++|.+|...|++++|.++|++++.
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2223455667777777777777777777776652 23356778888888888888888888888886
Q ss_pred hC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991 580 ID--------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (781)
Q Consensus 580 ~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (781)
+. +.....+..+|..+.+.+++.+|...|.+++.+ .|+....+.+||.+|..+|++++|+++.++
T Consensus 396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 396 ILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 53 233556788888899999999888888888765 344457888999999999999999999988
Q ss_pred HHhh
Q 003991 645 ALDL 648 (781)
Q Consensus 645 al~~ 648 (781)
++..
T Consensus 476 ~~~~ 479 (508)
T KOG1840|consen 476 VLNA 479 (508)
T ss_pred HHHH
Confidence 8753
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=9.4e-15 Score=138.40 Aligned_cols=269 Identities=20% Similarity=0.210 Sum_probs=228.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 003991 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVN 493 (781)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 493 (781)
+..|.-+.-..+.++|+..|..+++.+|...++...+|.++...|..+.|+..-+..+.. |+. ..+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence 556777888899999999999999999999999999999999999999999988776654 433 44788999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-----HHHHHHHHHHHHHcCCHH
Q 003991 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQDLANSE 568 (781)
Q Consensus 494 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~ 568 (781)
...|-++.|...|...+....--..+...+..+|....+|++|++.-++...+.+.. ...+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999887666667899999999999999999999999999988765 567889999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
.|+..+.++++.+|++..+-..+|.+....|+|+.|++.++.+++.+|+. +++.-.+..||.++|+.++...++.++.+
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999985 67889999999999999999999999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991 648 LELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (781)
Q Consensus 648 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 696 (781)
..+...-.....-+.. ...-.+.|...+...+.-.|...-+
T Consensus 278 ~~~g~~~~l~l~~lie--------~~~G~~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 278 TNTGADAELMLADLIE--------LQEGIDAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred ccCCccHHHHHHHHHH--------HhhChHHHHHHHHHHHhhCCcHHHH
Confidence 9887543222211111 1222344555555566667766555
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.72 E-value=4e-15 Score=156.76 Aligned_cols=221 Identities=18% Similarity=0.172 Sum_probs=129.4
Q ss_pred hhHHHHhhHHHHHHHhhcc----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Q 003991 358 TSNEAKRNKKFCVTRISKS----KSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTAR 425 (781)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~ 425 (781)
..+.+..-.+.++..+.+. .+.-......+|..|...++|.+|+.+|++++.+ +|.-+.++.++|.+|
T Consensus 214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly 293 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLY 293 (508)
T ss_pred cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3444455555555553322 3333444556999999999999999999999975 344456788999999
Q ss_pred HHccCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHH
Q 003991 426 AFQRELEAAISDFTEAIQSNP--------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEP--------NSADILHER 489 (781)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l 489 (781)
...|++++|..++++++.+.. .-...+..++.++..++++++|..++.+++++.- .-+..+.++
T Consensus 294 ~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl 373 (508)
T KOG1840|consen 294 YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANL 373 (508)
T ss_pred hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 999999999999999987532 2233556666666777777777777776665421 113345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHH
Q 003991 490 GIVNFKFKDFNAAVEDLSACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-------RNFLEAW 554 (781)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~ 554 (781)
|.+|...|++++|.+.+++++.+. +.....+..+|..+.+.+++.+|...|..++.+. |+....+
T Consensus 374 ~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~ 453 (508)
T KOG1840|consen 374 AELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTY 453 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHH
Confidence 555555555555555555555442 1112334445555555555555555555444331 1222333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 555 GHLTQFYQDLANSEKALECLQQVL 578 (781)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~~~~al 578 (781)
.+|+.+|..+|+++.|+++.++++
T Consensus 454 ~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 454 LNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 444444444444444444444433
No 81
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=5.2e-12 Score=125.64 Aligned_cols=437 Identities=15% Similarity=0.106 Sum_probs=320.9
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC
Q 003991 40 RIELAKL-CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG 117 (781)
Q Consensus 40 r~~~~~~-~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 117 (781)
+++.++. -+++++++|...|.+|+.-+ .++++...-|.+-++.++-..|...+.+|+.+-|.--+.|+..-..-..+|
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence 4555553 68899999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcc
Q 003991 118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI 197 (781)
Q Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (781)
+.+.|...|++=.+..|++-+=+. .+.+.-.-...
T Consensus 156 Ni~gaRqiferW~~w~P~eqaW~s-fI~fElRykei-------------------------------------------- 190 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPDEQAWLS-FIKFELRYKEI-------------------------------------------- 190 (677)
T ss_pred ccHHHHHHHHHHHcCCCcHHHHHH-HHHHHHHhhHH--------------------------------------------
Confidence 999999999999666666532211 11111000000
Q ss_pred cccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccC
Q 003991 198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS 277 (781)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (781)
T Consensus 191 -------------------------------------------------------------------------------- 190 (677)
T KOG1915|consen 191 -------------------------------------------------------------------------------- 190 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHH
Q 003991 278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKE 357 (781)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (781)
T Consensus 191 -------------------------------------------------------------------------------- 190 (677)
T KOG1915|consen 191 -------------------------------------------------------------------------------- 190 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHH
Q 003991 358 TSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAA 434 (781)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A 434 (781)
....-...+..-.+ ..+..|+..|..-...|+..-|...|+.+++.-.++. ..+...|..-..+..++.|
T Consensus 191 ------eraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERa 263 (677)
T KOG1915|consen 191 ------ERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERA 263 (677)
T ss_pred ------HHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111111122 2466788888888889999999999999988654433 2344455555667788999
Q ss_pred HHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCH---HHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003991 435 ISDFTEAIQSNPSA--GEAWKRRGQARAALGES---VEAI-----QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504 (781)
Q Consensus 435 ~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~---~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 504 (781)
...|.-++..-|.+ ...+..+...-.+-|+. ++++ -.|++.+..+|.+.++|+.+-.+....|+.+.-.+
T Consensus 264 r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 264 RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 99999999888877 33333333333344543 3333 24777888899999999998888888899999999
Q ss_pred HHHHHHHhCCCCHH-------HHHHHHHHH---HHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHH
Q 003991 505 DLSACVKLDKENKS-------AYTYLGLAL---SSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKA 570 (781)
Q Consensus 505 ~~~~a~~~~p~~~~-------~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A 570 (781)
.|++|+...|.... +|..+-.++ ....+.+.+.+.|+.++++-|.. ...|...|....++.+...|
T Consensus 344 ~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 344 TYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHH
Confidence 99999988775422 222222222 34678888999999999988854 67888888888899999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (781)
Q Consensus 571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (781)
.+.+-.++...|. ...+.....+-.++++++.....|++.++..|.+..+|...|.+-..+|+.+.|...|+-|+....
T Consensus 424 RkiLG~AIG~cPK-~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 424 RKILGNAIGKCPK-DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHhccCCc-hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 9999999999887 344555566677888999999999999999999999999999999999999999999999988765
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccH
Q 003991 651 DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFK 694 (781)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 694 (781)
-+....+..+.+-+. ...+.++.|...|.+.++..+-.+
T Consensus 503 ldmpellwkaYIdFE-----i~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 503 LDMPELLWKAYIDFE-----IEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred cccHHHHHHHhhhhh-----hhcchHHHHHHHHHHHHHhcccch
Confidence 444444444444443 245666777777776666555433
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.69 E-value=8e-14 Score=147.99 Aligned_cols=311 Identities=12% Similarity=-0.022 Sum_probs=233.7
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 453 (781)
+|+.+..+..+|..+...|+...|...+.++.+..|.+ .+..+..|.++...|++++|...+++++..+|.+..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 58889999999999999999999999999988877754 556788899999999999999999999999999987776
Q ss_pred HHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003991 454 RRGQARAALGES----VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (781)
Q Consensus 454 ~la~~~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 529 (781)
. +..+...|++ ..+...+.......|.....+..+|.++...|++++|+..++++++..|+++.++..+|.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 5 5555555544 4444444443356677777888999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH---HHHHHHHHCCC
Q 003991 530 IGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYH---LRGLLLHGLGQ 600 (781)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~---~la~~~~~~g~ 600 (781)
.|++++|+.++.+++...|..+ ..+..+|.++...|++++|+..|++++...|. ...... .+...+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999999999876432 35668999999999999999999999866652 221111 22222333443
Q ss_pred HHHHHHH--H-HHhhccCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC--cHHHHHHHHHHHHHHHHHHHHH
Q 003991 601 HKKAIKD--L-SSGLGIDP--SNIECLYLRASCYHAIGEYREAIKDYDAALDLELD--SMEKFVLQCLAFYQKEIALYTA 673 (781)
Q Consensus 601 ~~~A~~~--~-~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~ 673 (781)
...+..+ + .......| .........+.++...|+.++|...++.+....-. .............-.++.++..
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3222222 1 11111112 12233346888899999999999999888664422 1111223344556778888999
Q ss_pred hchhhHHHHHhhhcC
Q 003991 674 SKINSEFCWFDIDGD 688 (781)
Q Consensus 674 ~~~~~A~~~~~~~~~ 688 (781)
|++..|+..+..+..
T Consensus 321 g~~~~A~~~L~~al~ 335 (355)
T cd05804 321 GNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999977765
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=2.9e-13 Score=143.65 Aligned_cols=268 Identities=15% Similarity=0.053 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCcHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI----QSNPSAGEAWKRRG 456 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la 456 (781)
.+..+..|..++..|++++|...++++++.+|.+..++.. +..+...|++..+.....+++ ...|....++..+|
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 3445567888999999999999999999999999987775 666655555444444444443 46677778888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCC
Q 003991 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGE 532 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~g~ 532 (781)
.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|..+ ..+..++.++...|+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999877443 346689999999999
Q ss_pred HHHHHHHHHHHHhhCcc--cHHHHH---HHHHHHHHcCCHHHHHHH--H-HHHHhhCCC--CHHHHHHHHHHHHHCCCHH
Q 003991 533 YKKAEEAHLKAIQLDRN--FLEAWG---HLTQFYQDLANSEKALEC--L-QQVLYIDKR--FSKAYHLRGLLLHGLGQHK 602 (781)
Q Consensus 533 ~~~A~~~~~~al~~~~~--~~~~~~---~la~~~~~~g~~~~A~~~--~-~~al~~~~~--~~~~~~~la~~~~~~g~~~ 602 (781)
+++|+..+++++...|. ...... .+...+...|....+..+ + .......+. ........+.++...|+.+
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH
Confidence 99999999999866652 222111 222233334433333322 1 111111121 2233346788889999999
Q ss_pred HHHHHHHHhhccCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 603 KAIKDLSSGLGIDPS---------NIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 603 ~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
+|...++........ ........|.++...|++++|+..+..++.+.
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999887653322 24667788999999999999999999999765
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.5e-11 Score=126.24 Aligned_cols=283 Identities=15% Similarity=0.064 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------CC-CHHHHHHHHHHHHHcc
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKED------------------------------PM-YPEALIGRGTARAFQR 429 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------------------------p~-~~~~~~~la~~~~~~g 429 (781)
...+...|..+++.|+|++|+.+|+.+++.+ |. ..+.+|+.|.++...|
T Consensus 110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g 189 (652)
T KOG2376|consen 110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENG 189 (652)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc
Confidence 3345555666777777777777777664322 22 4567899999999999
Q ss_pred CHHHHHHHHHHHHHhCC-------Cc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-----
Q 003991 430 ELEAAISDFTEAIQSNP-------SA--------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER----- 489 (781)
Q Consensus 430 ~~~~A~~~~~~al~~~p-------~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----- 489 (781)
+|.+|++.+++++.+.. .+ ..+...++.++..+|+..+|...|...+..+|.+.......
T Consensus 190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLv 269 (652)
T KOG2376|consen 190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLV 269 (652)
T ss_pred cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchh
Confidence 99999999999954311 11 23677889999999999999999999999887663221111
Q ss_pred --------------------------------------------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991 490 --------------------------------------------GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (781)
Q Consensus 490 --------------------------------------------a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 525 (781)
+.+.+..+.-+.+.+.....-...|....-......
T Consensus 270 a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~ 349 (652)
T KOG2376|consen 270 ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEA 349 (652)
T ss_pred hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHH
Confidence 111111111111111111111111221111122223
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHH
Q 003991 526 ALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKAYHLRGLLLHG 597 (781)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~ 597 (781)
...+...+.+|...+....+.+|.. ..+...++.+.+..|+++.|+..+...... ....|.+-..+-..+..
T Consensus 350 t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~ 429 (652)
T KOG2376|consen 350 TKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYK 429 (652)
T ss_pred HHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHh
Confidence 3333336788888888888888877 677888899999999999999999833311 12234444555556666
Q ss_pred CCCHHHHHHHHHHhhcc-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 003991 598 LGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (781)
Q Consensus 598 ~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 663 (781)
.++-+.|...+..++.. .+..-..+...+..-.+.|+-++|...+++.++.+|++.++...+..+|
T Consensus 430 ~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 430 IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAY 502 (652)
T ss_pred ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 66666666666666543 2223345666777888889999999999999999999999876665444
No 85
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=6.5e-15 Score=129.47 Aligned_cols=120 Identities=22% Similarity=0.231 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch------hhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHH
Q 003991 34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI------QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107 (781)
Q Consensus 34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~------~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 107 (781)
..+-+.+..||++|.+|+|.+|..-|+.||+++|.. .+|+|||.|+++++.|+.||.+|.+||++.|+|.+|+.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 345566789999999999999999999999998432 34899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 003991 108 LKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153 (781)
Q Consensus 108 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 153 (781)
|++.+|.++.++++|+.+|++.+++.|........+.++.|....-
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~er 218 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINER 218 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999999999999998888888888876543
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.60 E-value=2e-12 Score=138.51 Aligned_cols=305 Identities=16% Similarity=0.099 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
.+.++.++.++...|++++|++++++....-.+....+-.+|.++..+|++++|...|...+..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 56788889999999999999999999888888888999999999999999999999999999999999999998888873
Q ss_pred HcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 003991 461 ALG-----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA-AVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (781)
Q Consensus 461 ~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 534 (781)
... +.+.-...|++.....|....+. .+...+..-..+.. +..++...+.. .-|.....+-.+|....+..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHH
Confidence 332 56777888998888888653332 22222222223433 33444444433 34555555655555433333
Q ss_pred HHHHHHHHHHhh---------------Cccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991 535 KAEEAHLKAIQL---------------DRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (781)
Q Consensus 535 ~A~~~~~~al~~---------------~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (781)
-....+...+.. .|.. ..+++.+|..|-..|++++|+.+++++|...|..++.|...|.++..
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 223333332211 1111 34568899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc-HHHHHHHHHHH-HHHHHHHHHHhc
Q 003991 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS-MEKFVLQCLAF-YQKEIALYTASK 675 (781)
Q Consensus 598 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~-~~~~~~~~~~~~ 675 (781)
.|++.+|.+.++.+-.+++.|-.+....+..+.+.|+.++|.+.+......+-+. .+.+-..+.+| ...|.++...|+
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998888899999999999999999998876655321 12222333333 355888888999
Q ss_pred hhhHHHHHhhhcC
Q 003991 676 INSEFCWFDIDGD 688 (781)
Q Consensus 676 ~~~A~~~~~~~~~ 688 (781)
+..|+..|.....
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888766543
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.60 E-value=1.2e-13 Score=136.94 Aligned_cols=189 Identities=16% Similarity=0.165 Sum_probs=158.1
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH---
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE--- 450 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 450 (781)
.+..++.++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 456788999999999999999999999999999999876 57899999999999999999999999999998765
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003991 451 AWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (781)
Q Consensus 451 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 522 (781)
+++.+|.++... |++++|+..|++++..+|++...+..+..+....+ . .......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHHH
Confidence 788999999876 78999999999999999988666543332211110 0 0122357
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991 523 LGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (781)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 582 (781)
+|.++...|++.+|+..+++++...|+. +.+++.+|.++...|++++|..+++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8889999999999999999999987654 68999999999999999999999888776655
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.60 E-value=1e-13 Score=137.44 Aligned_cols=190 Identities=16% Similarity=0.059 Sum_probs=155.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---
Q 003991 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS--- 518 (781)
Q Consensus 445 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~--- 518 (781)
++..+..++.+|..+...|++++|+..+++++...|.++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 445678899999999999999999999999999999875 57899999999999999999999999999988765
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003991 519 AYTYLGLALSSI--------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (781)
Q Consensus 519 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 590 (781)
+++.+|.++... |++++|+..+++++..+|++..++..+..+....+ . .......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHHH
Confidence 688889999876 78899999999999999988665533332211100 0 0123457
Q ss_pred HHHHHHHCCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
+|.++...|++.+|+..|++++...|+. +.+++.+|.++..+|++++|..+++.+....|+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8889999999999999999999997764 589999999999999999999999888776663
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.60 E-value=4.3e-14 Score=126.70 Aligned_cols=126 Identities=14% Similarity=0.045 Sum_probs=105.1
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (781)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (781)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46778888888775 556788888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 003991 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665 (781)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 665 (781)
+++.+++++|.++..+|++++|+..|++++++.|+++..+.+++.+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888876666555443
No 90
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=1.3e-11 Score=121.21 Aligned_cols=299 Identities=14% Similarity=0.042 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQAR 459 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 459 (781)
+......|..-+..|+|.+|.....+.-+..+....++..-+.+..+.|+++.|-.++.++-+..++ ...+....+.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4455666788888999999999999988888887788888899999999999999999999998544 356778899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-H--HHHHHHH--HHHc---C
Q 003991 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS-A--YTYLGLA--LSSI---G 531 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~--~~~la~~--~~~~---g 531 (781)
...|++..|.....++++..|.++.+......+|...|+|.....++.+.-+..--+.. . +-..+.. +.+. +
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999988877654322211 1 1111111 1111 1
Q ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 003991 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (781)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (781)
..+.-..+++..-..-..++.....++.-+...|+.++|.+..+.+++..-+. .....++ ...-+++..=++..++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHh--hcCCCCchHHHHHHHHH
Confidence 11111223333222223445666666666667777777777777766554332 2221111 23456666666666666
Q ss_pred hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 003991 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWF 683 (781)
Q Consensus 612 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 683 (781)
++..|++|..+..+|.++.+.+.|.+|..+|+.+++..|+. ..+..++.++-..|..........+++..+
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777776666643 345566666666666666666666665443
No 91
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.57 E-value=1.5e-14 Score=137.64 Aligned_cols=112 Identities=19% Similarity=0.158 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-chhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHH
Q 003991 29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107 (781)
Q Consensus 29 ~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~-~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 107 (781)
.++++....+.+.+||++|.+|.|++||+||+++|..+| ||..+.|||.+|++++.+..|..+|+.|+.+|-.|.+||.
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 455666666679999999999999999999999999995 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCChHHH
Q 003991 108 LKGCAFSALGRKEEALSVWEKGYEHALHQSADL 140 (781)
Q Consensus 108 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 140 (781)
|+|.+-..+|+..+|.++++++|++.|+.-+--
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHH
Confidence 999999999999999999999999999964433
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.56 E-value=8.1e-14 Score=124.88 Aligned_cols=127 Identities=15% Similarity=0.130 Sum_probs=90.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (781)
Q Consensus 503 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 582 (781)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34566666666653 445677777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (781)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (781)
+++.+++.+|.++...|++++|+..|++++...|+++..+..+|.+...+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777776666665443
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.1e-10 Score=119.85 Aligned_cols=265 Identities=14% Similarity=0.127 Sum_probs=179.9
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPM-------YPEALIGRGTARAFQRELEAAISDFTEAIQ 443 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (781)
.+-+.+|+.|..+...|+|.+|++.+++++++ +.+ -..+...++.++..+|+.++|...|...++
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 35678899999999999999999999999542 111 123567889999999999999999999998
Q ss_pred hCCCcHHH-------------------------------------------------HHHHHHHHHHcCCHHHHHHHHHH
Q 003991 444 SNPSAGEA-------------------------------------------------WKRRGQARAALGESVEAIQDLSK 474 (781)
Q Consensus 444 ~~p~~~~~-------------------------------------------------~~~la~~~~~~g~~~~A~~~~~~ 474 (781)
.+|.+... +.+.+.+.+..+.-+.+.+....
T Consensus 253 ~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 253 RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS 332 (652)
T ss_pred hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 87765321 11112222222222222222222
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Q 003991 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQL------- 546 (781)
Q Consensus 475 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 546 (781)
.-...|....-.............+..|..++......+|.. ..+...++.+.+.+|+++.|++.+...+..
T Consensus 333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 212222222112222333333347889999999999999988 677888999999999999999999843321
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH
Q 003991 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (781)
Q Consensus 547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (781)
....+.+...+-..++..++.+.|...+..++.- .+.....+...+..-.+.|+-++|...+++.++.+|++.
T Consensus 413 ~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 413 AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 1122445555556677777766676666666643 222334556667777888999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991 620 ECLYLRASCYHAIGEYREAIKDYDA 644 (781)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~ 644 (781)
.++..+...|... +.+.|..+-++
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999888776 56777665443
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.55 E-value=8.1e-13 Score=147.34 Aligned_cols=281 Identities=14% Similarity=-0.019 Sum_probs=199.1
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (781)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (781)
....+..-.|.+..++..++..+...+++++|+..++..++..|+....++.+|.++.+.+++.++... .++...+.+
T Consensus 19 ~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 19 TRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred hhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 444556678899999999999999999999999999999999999999999999999999987776655 444443333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 528 (781)
.++ .+++++...+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|.
T Consensus 97 --------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 97 --------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred --------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 234 44455555555566666677777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--------------------H
Q 003991 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA--------------------Y 588 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------~ 588 (781)
.. +.++|+.++.+|+.. +...+++.++..++.+.+..+|++.+. +
T Consensus 162 e~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~ 226 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLL 226 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHH
Confidence 77 777777777777654 444556677777777777666665443 2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 003991 589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEI 668 (781)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 668 (781)
.-+=..|...++|++++.+++.+++.+|.|..+...++.||. +.|.. ...|+..+++..=.
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~---------------- 287 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIG---------------- 287 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccc----------------
Confidence 223356667778888888888888888888888888888886 44444 55555555542100
Q ss_pred HHHHHhchhhHHHHHhhhcCCCcccHHHHHHhcC
Q 003991 669 ALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLH 702 (781)
Q Consensus 669 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 702 (781)
.....+..++..|++-..+++|.--+.+.|+.
T Consensus 288 --~~~~~~~~~i~~fek~i~f~~G~yv~H~~WGv 319 (906)
T PRK14720 288 --NNRKPVKDCIADFEKNIVFDTGNFVYHRTWGV 319 (906)
T ss_pred --cCCccHHHHHHHHHHHeeecCCCEEEEcCCCC
Confidence 00123556777888888888887665444433
No 95
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.54 E-value=1.1e-13 Score=134.81 Aligned_cols=263 Identities=19% Similarity=0.201 Sum_probs=208.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCcHHHHHHH
Q 003991 386 SRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPSAGEAWKRR 455 (781)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l 455 (781)
.-|..+++.|++...+.+|+.+++...++. .+|..+|.+|+.+++|++|+++-..-+.+ .-..+..--++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 447889999999999999999999877654 46789999999999999999986543322 12234456689
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 003991 456 GQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKD--------------------FNAAVEDLSAC 509 (781)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~a 509 (781)
|.++...|.|++|+.+..+-+.+... ...+++++|.+|...|+ ++.|.++|..-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888766432 25689999999987664 34455555555
Q ss_pred HHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 510 VKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQV 577 (781)
Q Consensus 510 ~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (781)
+++... ...++-++|..|+-+|+|+.|+..-+.-+.+.... ..++.++|+++.-.|+++.|+++|++.
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 544322 23567788999999999999999988877765443 468899999999999999999999987
Q ss_pred HhhC----C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991 578 LYID----K--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDAA 645 (781)
Q Consensus 578 l~~~----~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (781)
+.+. . ..+...+.+|..|.-..++++|+.++.+-+.+.. ....+++.+|..+..+|..++|+.+.++.
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 6542 2 2355688999999999999999999998776632 23578999999999999999999998888
Q ss_pred Hhh
Q 003991 646 LDL 648 (781)
Q Consensus 646 l~~ 648 (781)
+++
T Consensus 342 l~~ 344 (639)
T KOG1130|consen 342 LRS 344 (639)
T ss_pred HHH
Confidence 765
No 96
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=5.1e-12 Score=116.21 Aligned_cols=184 Identities=17% Similarity=0.056 Sum_probs=144.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 003991 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (781)
Q Consensus 480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 559 (781)
++...++-....+....|+.+.|..++++.....|.+..+....|..+...|.+++|+++|+..++-+|.+..++...-.
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 33344555566666777888888888888777778888888888888888888888888888888888888777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC---CHH
Q 003991 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG---EYR 636 (781)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~ 636 (781)
+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++..+..+|.+++-+| ++.
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 77778888888888888888888888888888888888888888888888888888888888888888887766 566
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHH
Q 003991 637 EAIKDYDAALDLELDSMEKFVLQCLAF 663 (781)
Q Consensus 637 ~A~~~~~~al~~~p~~~~~~~~~~~~~ 663 (781)
-|.++|.++++++|.+..+++...+.-
T Consensus 209 ~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 788888888888887777665544443
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.52 E-value=1.4e-10 Score=124.46 Aligned_cols=255 Identities=17% Similarity=0.115 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
..+++.+|..+-..|++++|+.+++++|+..|..++.+...|.++...|++.+|...++.+..+++.+--+-...+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 35668899999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HcCCHHHHHHHHHHHHHhCC--CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHH-H-
Q 003991 461 ALGESVEAIQDLSKALEFEP--NS-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTY-L- 523 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p--~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~-l- 523 (781)
+.|+.++|...+......+. .. .......|.+|.+.|++..|++.|..+.+...+. ...|.. .
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 99999999999887765542 11 2234567899999999999999999887763221 111111 0
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC-------------------------------------
Q 003991 524 -GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA------------------------------------- 565 (781)
Q Consensus 524 -a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g------------------------------------- 565 (781)
-+.|..+=+++. -+...|....+......+|+...
T Consensus 354 t~r~Y~~~L~~ed-------~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~ 426 (517)
T PF12569_consen 354 TLRAYVDMLRWED-------KLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKA 426 (517)
T ss_pred cHHHHHHHHHHHH-------HhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHH
Confidence 011111111110 01111111112122222222110
Q ss_pred CHHHHHHHHHH-H----------Hh--hCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991 566 NSEKALECLQQ-V----------LY--IDKRFSKAYHLRGLLLHGLG-QHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (781)
Q Consensus 566 ~~~~A~~~~~~-a----------l~--~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (781)
.-+++...-.+ . -. ..+.+++ -.|.-+.... =.++|.+.++..+...|++.+.|..--.+|.+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~D---p~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~R 503 (517)
T PF12569_consen 427 KKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDD---PLGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLR 503 (517)
T ss_pred hHHHHHHHHhhhhhhhhccccccccccCCcCCCC---ccHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHh
Confidence 01111100000 0 00 0011111 1233344444 36889999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHH
Q 003991 632 IGEYREAIKDYDAA 645 (781)
Q Consensus 632 ~g~~~~A~~~~~~a 645 (781)
.|++-.|++.+.+|
T Consensus 504 k~K~LLaLqaL~kA 517 (517)
T PF12569_consen 504 KGKYLLALQALKKA 517 (517)
T ss_pred cCcHHHHHHHHHhC
Confidence 99999999988764
No 98
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=5.1e-12 Score=116.22 Aligned_cols=187 Identities=18% Similarity=0.156 Sum_probs=147.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (781)
Q Consensus 446 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 525 (781)
++...++-....+....|+.+.|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+..++...--
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 34444555566666777888888888888877778888888888888888888888888888888888888877777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHH
Q 003991 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHK 602 (781)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~ 602 (781)
+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..+|.+++-+| ++.
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 77778888888888888888888888888888888888888888888888888888888888888888877665 567
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (781)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (781)
.|.++|.++++++|.+..+++.+-.|....
T Consensus 209 ~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 788888888888887777777665554433
No 99
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=3.8e-10 Score=112.64 Aligned_cols=333 Identities=14% Similarity=0.147 Sum_probs=273.7
Q ss_pred HhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 003991 363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (781)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (781)
...+...+...+..+..+...|...|..-..++++..|..+|++++..+..+...|...+.+-+.......|...+.+++
T Consensus 55 q~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAv 134 (677)
T KOG1915|consen 55 QLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAV 134 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 33344455555666677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003991 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (781)
Q Consensus 443 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 522 (781)
.+-|.-...|+....+-..+|+...|.+.|++-+...| +..+|......-.+.+.++.|...|++.+-..|+ ...|..
T Consensus 135 t~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wik 212 (677)
T KOG1915|consen 135 TILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIK 212 (677)
T ss_pred HhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHH
Confidence 99999999999999999999999999999999999999 5678888888889999999999999999988874 677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHH
Q 003991 523 LGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHG 597 (781)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~ 597 (781)
.+..-...|+...|...|..|++...++ ...+...|..-..++.++.|..+|+-++..-|.+ ...+..+...-.+
T Consensus 213 yarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 213 YARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999876554 3455566777778899999999999999998876 4444444444455
Q ss_pred CCCH---HHHHH-----HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 003991 598 LGQH---KKAIK-----DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIA 669 (781)
Q Consensus 598 ~g~~---~~A~~-----~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 669 (781)
-|+. ++++. .|+..+..+|.|.++|+.+-.+....|+.+.-.+.|++|+..-|-..+-.+..-.+|.-.--+
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 5553 33332 477788899999999999999999999999999999999998886655555555555544444
Q ss_pred HHH---HhchhhHHHHHhhhcCCCc----ccHHHH
Q 003991 670 LYT---ASKINSEFCWFDIDGDIDP----LFKEYW 697 (781)
Q Consensus 670 ~~~---~~~~~~A~~~~~~~~~~~p----~~~~~~ 697 (781)
+|. ..+.+.+...|+.++++=| .|+..|
T Consensus 373 lyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiW 407 (677)
T KOG1915|consen 373 LYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIW 407 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHH
Confidence 433 5566777778877777766 355555
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.50 E-value=1.4e-12 Score=123.43 Aligned_cols=125 Identities=21% Similarity=0.268 Sum_probs=109.6
Q ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHCCC--HHHHHH
Q 003991 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL-HGLGQ--HKKAIK 606 (781)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~g~--~~~A~~ 606 (781)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++.+.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567788888899999999999999999999999999999999999999999999999999999874 67677 589999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
.++++++.+|+++.+++.+|.++...|++++|+.+|++++++.|.+.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999998877654
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.49 E-value=5.1e-12 Score=117.80 Aligned_cols=165 Identities=21% Similarity=0.210 Sum_probs=73.0
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520 (781)
Q Consensus 441 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 520 (781)
....+|++..+ ..++..+...|+-+.+..+..++...+|.+..++..+|...+..|++..|+..++++....|+++.+|
T Consensus 59 ~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~ 137 (257)
T COG5010 59 AVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAW 137 (257)
T ss_pred HHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhh
Confidence 33334444444 44444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 003991 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600 (781)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 600 (781)
..+|.+|.+.|++++|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+....+.+..+..+++.+....|+
T Consensus 138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 138 NLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred hHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence 44444444444444444444444444444444444444444444444444444444444434344444444444444444
Q ss_pred HHHHHH
Q 003991 601 HKKAIK 606 (781)
Q Consensus 601 ~~~A~~ 606 (781)
+.+|..
T Consensus 218 ~~~A~~ 223 (257)
T COG5010 218 FREAED 223 (257)
T ss_pred hHHHHh
Confidence 444443
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.49 E-value=5.8e-12 Score=117.44 Aligned_cols=182 Identities=18% Similarity=0.113 Sum_probs=170.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (781)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (781)
+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+......+|...+..|++.+|+..++++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4444777777788889999999 999999999999999999999999999999999988999999999999999999999
Q ss_pred HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHH
Q 003991 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (781)
Q Consensus 544 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (781)
....|++..+|..+|.+|.+.|+++.|...|.+++++.|+.+.+..++|..+.-.|+++.|..++..+....+.+..+..
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Q 003991 624 LRASCYHAIGEYREAIKDYDAAL 646 (781)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al 646 (781)
+++.+....|++.+|.....+-+
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHhhcCChHHHHhhccccc
Confidence 99999999999999998766544
No 103
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=8.2e-13 Score=130.82 Aligned_cols=123 Identities=21% Similarity=0.269 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----------------cchhhhhhHHHHHHhhhCHHHHHHHHHH
Q 003991 31 SVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS----------------YEIQDICNRAFCYSQLELHKHVIRDCDK 94 (781)
Q Consensus 31 ~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~----------------~~~~~~~~rA~~~~~~~~~~~A~~~~~~ 94 (781)
+..+.+...|.++|.+|+.|+|..|+..|++|+..- .-..++.|.|.|++++++|.+|+..|++
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 467788899999999999999999999999988642 1123488999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 003991 95 ALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153 (781)
Q Consensus 95 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 153 (781)
+|.++|++++|+||+|.+++.+|+++.|+..|++++++.|++..+..++..+.......
T Consensus 283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 283 VLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888887766644
No 104
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=5e-11 Score=114.47 Aligned_cols=290 Identities=14% Similarity=0.098 Sum_probs=145.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (781)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (781)
..-.|.+++..|+|++|+..|.-+...+.-+.+.+.++|.+++.+|.|.+|.....++ |+++-....+-.+-.+.+
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence 3344555555555555555555555544444555555555555555555555444332 333333333333333344
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (781)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (781)
+-++-.. |...+.- ..+-...++.+.+..-.|++|++.|++++.-+|+.......+|.+|.++.-++-+.+.+.-.
T Consensus 136 dEk~~~~-fh~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 136 DEKRILT-FHSSLQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred cHHHHHH-HHHHHhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 4333222 2222211 12333445555555566666666666666666666666666666666666666666666666
Q ss_pred HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (781)
Q Consensus 544 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (781)
+...|+++.+....+..+++.=+-..|..-....... +...+..-...-.-+.--.+-+.|++++-..++. -|++.
T Consensus 212 L~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEAR 288 (557)
T KOG3785|consen 212 LRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEAR 288 (557)
T ss_pred HHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhh
Confidence 6666666666666665555543333333333332211 1111111110000000011223333333333322 24667
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991 623 YLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (781)
Q Consensus 623 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 687 (781)
.++...|..+++.++|+...+ +++|..|..+...+.++...|.......++.-|...|...|
T Consensus 289 lNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG 350 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG 350 (557)
T ss_pred hhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc
Confidence 777777777777777766544 46777777776666666666555555555555555554443
No 105
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.47 E-value=5.3e-13 Score=130.23 Aligned_cols=267 Identities=17% Similarity=0.172 Sum_probs=205.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHH
Q 003991 420 GRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEFE------PNSADILHER 489 (781)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l 489 (781)
.-|.-+++.|++...+.+|+.+++...++ ..+|..+|..|..+++|++|+++-..-+.+. -..+...-++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 34677889999999999999999987766 3478889999999999999998755433321 1224566789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q 003991 490 GIVNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGE--------------------YKKAEEAHLKA 543 (781)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~a 543 (781)
|.++-..|.|++|+.+..+-+.+.. ....+++++|.+|...|+ ++.|.++|..-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888765532 235789999999998775 34455555555
Q ss_pred HhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 003991 544 IQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (781)
Q Consensus 544 l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (781)
+++.... ..++-++|+.|+-+|+|+.|+..-+.-+.+.... -.++.++|.++.-+|+++.|+++|++.
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 5443322 3567789999999999999999988877664432 357889999999999999999999987
Q ss_pred hccC----CC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhh
Q 003991 612 LGID----PS--NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI 685 (781)
Q Consensus 612 l~~~----p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 685 (781)
+.+. .. .+...+.+|..|.-..++++|+.++.+-+.+..+ ..-..-.+.+++.+|.++...+..++|+.+..+
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe-L~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE-LEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6542 22 3467789999999999999999999998887643 223445566888888888888988888776655
Q ss_pred hc
Q 003991 686 DG 687 (781)
Q Consensus 686 ~~ 687 (781)
..
T Consensus 341 hl 342 (639)
T KOG1130|consen 341 HL 342 (639)
T ss_pred HH
Confidence 43
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.47 E-value=7.3e-12 Score=118.59 Aligned_cols=120 Identities=19% Similarity=0.269 Sum_probs=55.5
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCC--HHHHHHH
Q 003991 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN-FKFKD--FNAAVED 505 (781)
Q Consensus 429 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~~ 505 (781)
++.++++..+++++..+|++...|..+|.++...|++++|+..|++++.+.|+++.++..+|.++ ...|+ +++|...
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444432 33333 2444444
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Q 003991 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548 (781)
Q Consensus 506 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (781)
++++++.+|+++.++..+|..+...|++++|+.+++++++..|
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4444444444444444444444444444444444444444443
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.45 E-value=1.3e-11 Score=137.32 Aligned_cols=156 Identities=15% Similarity=0.003 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (781)
Q Consensus 501 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (781)
+++.-+.......|.++.++..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 33334444445578888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (781)
Q Consensus 581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 656 (781)
+|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 9999999999999999999999999999999988888889999999999999999999999999998877665544
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.44 E-value=5.1e-12 Score=132.76 Aligned_cols=224 Identities=17% Similarity=0.139 Sum_probs=196.0
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003991 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (781)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (781)
........++..+...|-...|+..|++. ..|.....||...|+..+|.....+-++ .|.++..|..+|.+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 34456678899999999999999999885 4566788899999999999999999888 67788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Q 003991 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (781)
Q Consensus 493 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 572 (781)
.....-|++|.++.+.. +..+...+|......++|.++.+.++..++++|-....|+.+|.+..+.+++..|.+
T Consensus 467 ~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 87777777777776653 344667778778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
+|..++.++|++..+|.+++.+|.+.++-.+|...+.++++.+-++..+|.+.-.+....|.+++|++.|.+.+.+..+
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999888999999999999999999999999999887543
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.43 E-value=2.1e-11 Score=136.22 Aligned_cols=223 Identities=16% Similarity=0.065 Sum_probs=189.7
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003991 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489 (781)
Q Consensus 410 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 489 (781)
.+|.+..++..++..+...+++++|+..++.+++..|+...+++.+|.++.+.+++.++... .++..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----------- 92 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS----------- 92 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----------
Confidence 47889999999999999999999999999999999999999999999999999986666544 34333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Q 003991 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569 (781)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 569 (781)
.....++ .+++++...+...+.+..+++.+|.+|..+|+.++|...|+++++.+|+++.++.++|..|... +.++
T Consensus 93 ---~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 93 ---FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred ---cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 3344455 5666666677778888889999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH--------------------HHHHHHH
Q 003991 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL--------------------YLRASCY 629 (781)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------------------~~la~~~ 629 (781)
|+.++.+++.. +...++|..+.+++.+.+..+|++.+.+ .-+-.+|
T Consensus 168 A~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 168 AITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 99999999876 6667789999999999999888875442 2233788
Q ss_pred HHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 003991 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (781)
Q Consensus 630 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 664 (781)
...++|++++..++.+++.+|++..+...++.+|-
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 88999999999999999999999886665555544
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.42 E-value=7.9e-12 Score=131.37 Aligned_cols=223 Identities=17% Similarity=0.145 Sum_probs=200.6
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (781)
.|........+|..++..|-...|+.+|++. ..|-....||...|+..+|.....+-++ .|.++..|..+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 5667778889999999999999999999985 5677789999999999999999999998 677778888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 536 (781)
.+.....-|++|.++.+.. +..+...+|......++|.++.++++..++++|-....|+.+|.+..+.++++.|
T Consensus 465 Dv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7776666666666665543 3457778888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc
Q 003991 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (781)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (781)
.+.|..++...|++..+|.+++..|...++-.+|...+.++++.+-.+..+|.+...+....|.+++|++.|.+.+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999899999999999999999999999999999876
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.41 E-value=2.9e-12 Score=128.25 Aligned_cols=258 Identities=13% Similarity=0.051 Sum_probs=196.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 003991 388 GIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (781)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (781)
.+.++..|+|..++..++ ....++. .......+.+++..+|+++..+.-... ..+....+...++..+...++.+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence 455788999999998777 2233332 345678899999999998876654433 12333445566666665555667
Q ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 467 EAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (781)
Q Consensus 467 ~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (781)
.++..++..+.... .++.+....|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77776665543322 23556677788899999999999988764 567888888999999999999999999999
Q ss_pred hhCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991 545 QLDRNFLEAWGHLTQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (781)
Q Consensus 545 ~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (781)
+.+.+..-.....+++.+..| .+.+|...|+......+..+..+..++.++..+|+|++|...+.+++..+|+++.++
T Consensus 159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 888877666666666666666 589999999999888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCH-HHHHHHHHHHHhhccCcHH
Q 003991 623 YLRASCYHAIGEY-REAIKDYDAALDLELDSME 654 (781)
Q Consensus 623 ~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~ 654 (781)
.+++.+...+|+. +.+.+++.+....+|+++-
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 9999999999998 6677889998889999875
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.39 E-value=9.5e-12 Score=111.38 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=101.2
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (781)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (781)
+.+++++..+|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
++..++.+|.++...|++++|+..|+++++++|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 8888888888888888888888888888888888765
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.39 E-value=7.9e-11 Score=131.20 Aligned_cols=149 Identities=11% Similarity=-0.002 Sum_probs=124.6
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520 (781)
Q Consensus 441 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 520 (781)
.....|.+.+++..+|.+....|.+++|..+++.++++.|++..++..++.++.+.+++++|+..+++++..+|++..++
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~ 157 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREI 157 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHH
Confidence 34457778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003991 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589 (781)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 589 (781)
+.+|.++...|++++|+..|++++..+|++..++..+|.++...|+.++|...|++++....+-...+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 888888888888888888888888888888888888888888888888888888888877665444433
No 114
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=2e-09 Score=106.18 Aligned_cols=258 Identities=12% Similarity=0.031 Sum_probs=196.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcC
Q 003991 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK 497 (781)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~ 497 (781)
..-|..-+..|+|.+|.....+.-+..+...-.+..-+..-...|+++.+-.++.++-+..+++ ..+....+.+....|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 4445566678999999999999888887777788888889999999999999999999995544 567888999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHH--HHHcCC---HHH
Q 003991 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQF--YQDLAN---SEK 569 (781)
Q Consensus 498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~--~~~~g~---~~~ 569 (781)
++..|..-..++.+..|.++.+......+|...|++.+...++.+.-+..--+ ..-+-+.+.. +.+..+ .+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 99999999999999999999999999999999999999999988876643222 1112222211 112222 222
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
-..+++..-..-.+++.....++.-+...|++++|.+....+++..-+ +.....++ ...-+++..=++..++.++..
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIP--RLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHh--hcCCCCchHHHHHHHHHHHhC
Confidence 223444443334466888888999999999999999999999987655 33222222 235688999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhh
Q 003991 650 LDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID 686 (781)
Q Consensus 650 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 686 (781)
|+++. .++..|..++..+.|.+|-.+|+.+
T Consensus 325 ~~~p~-------L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 325 PEDPL-------LLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred CCChh-------HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99997 5555666666777788887777665
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=8.3e-10 Score=132.58 Aligned_cols=310 Identities=13% Similarity=0.011 Sum_probs=233.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--- 448 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 448 (781)
+......+..++..|++++|...+..+....+. .......+|.++...|++++|..++++++...+..
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY 488 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence 445677788889999999999999988764321 12345567888899999999999999999854442
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----
Q 003991 449 --GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE----- 515 (781)
Q Consensus 449 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----- 515 (781)
..+...+|.++...|++++|...+.+++...... ..++..+|.++...|++++|...+.+++.....
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 2356778889999999999999999998764321 345677899999999999999999998876221
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Q 003991 516 ---NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--- 584 (781)
Q Consensus 516 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--- 584 (781)
....+..+|.++...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.+..
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 1234567888999999999999999998875321 25566778999999999999999999987653321
Q ss_pred HHHHH----HHHHHHHHCCCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991 585 SKAYH----LRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (781)
Q Consensus 585 ~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 656 (781)
..... .....+...|+.+.|...+.......+... ..+..++.++...|++++|...+++++........ .
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~-~ 727 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL-M 727 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc-h
Confidence 11111 122445568999999999887765433322 22567999999999999999999999987533221 2
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCc
Q 003991 657 VLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP 691 (781)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 691 (781)
...+.++...|..+...|+.++|...+.++.++..
T Consensus 728 ~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 728 SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 24455677788899999999999999998877543
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.35 E-value=6.5e-09 Score=124.93 Aligned_cols=267 Identities=17% Similarity=0.060 Sum_probs=203.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 003991 386 SRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKR 454 (781)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 454 (781)
.+|..+...|++++|...+++++...+... .+...+|.++...|++++|...+.+++...... ..++..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 356777889999999999999988544422 355778889999999999999999998753321 235677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHH
Q 003991 455 RGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----NKSAYT 521 (781)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~ 521 (781)
+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++..... ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 899999999999999999998876321 1234567888999999999999999998876322 244566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHH----HHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHH
Q 003991 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWG----HLTQFYQDLANSEKALECLQQVLYIDKRFS----KAYHL 590 (781)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~ 590 (781)
.++.++...|++++|...+.++....+.. ..... .....+...|+.+.|...+.......+... ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 78999999999999999999987753322 11111 122445568999999999877654332222 12467
Q ss_pred HHHHHHHCCCHHHHHHHHHHhhccCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991 591 RGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (781)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (781)
++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++++....
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 89999999999999999999987522 234578889999999999999999999999987554
No 117
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.35 E-value=1.5e-11 Score=128.15 Aligned_cols=114 Identities=23% Similarity=0.252 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHc
Q 003991 38 TARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSAL 116 (781)
Q Consensus 38 ~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 116 (781)
..+..++.+|..|+|++|+.+|+++|.++ .++.+++++|.+++++|++++|+.++++||.++|+++.+|+++|.++..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999 67888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 003991 117 GRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151 (781)
Q Consensus 117 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 151 (781)
|++++|+..|++++.+.|+.+.....+..+.....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988777666655553
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.35 E-value=3.2e-11 Score=107.94 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=67.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003991 403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (781)
Q Consensus 403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 482 (781)
.|++++..+|++..+.+.+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 003991 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (781)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 518 (781)
+..++.+|.++...|++++|+..++++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 555555555555555555555555555555555443
No 119
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=2.3e-11 Score=115.61 Aligned_cols=120 Identities=25% Similarity=0.343 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
++.+-..|.-++..++|.+|+..|.++|+++|.++..|.++|.+|.++|.++.|++.++.++.++|....+|..+|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44556678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 003991 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 500 (781)
.+|++++|++.|+++++++|++...+.+|..+-...+...
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999887777766655555443
No 120
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.8e-12 Score=115.72 Aligned_cols=106 Identities=25% Similarity=0.318 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchh-hhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 003991 32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQ-DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG 110 (781)
Q Consensus 32 ~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~-~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 110 (781)
+++.+...+..++++|....|..||.+|+++|.++|++. ++-|||.|++++++|+.+..+|++|++++|+.+++++.+|
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 456778888999999999999999999999999997764 5679999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhccCCh
Q 003991 111 CAFSALGRKEEALSVWEKGYEHALHQS 137 (781)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~ 137 (781)
.+.+....+++|+..+.+|..+...++
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 999999999999999999977654443
No 121
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=7.6e-10 Score=104.06 Aligned_cols=153 Identities=21% Similarity=0.174 Sum_probs=78.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003991 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471 (781)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 471 (781)
.+..+|..|++++..-.+..|.+-..+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555445555555555555555544
Q ss_pred HHHHHHh------------------------------CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991 472 LSKALEF------------------------------EP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519 (781)
Q Consensus 472 ~~~al~~------------------------------~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 519 (781)
....... -| ++.+...+.|.+.++.|+++.|++-|+.+++...-++-.
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 4333221 12 234445555555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 520 YTYLGLALSSIGEYKKAEEAHLKAI 544 (781)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al 544 (781)
-++++.++++.|++..|+++..+.+
T Consensus 181 AYniALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 181 AYNLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5555555555555555555544444
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.30 E-value=9.1e-11 Score=102.39 Aligned_cols=111 Identities=15% Similarity=0.080 Sum_probs=99.3
Q ss_pred HHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH
Q 003991 543 AIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (781)
Q Consensus 543 al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 621 (781)
...+. ++..+..+.+|..++..|++++|...|+-+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34456 67788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 622 LYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
++++|.|++..|+.+.|.+.|+.++....+.+
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 99999999999999999999999998874443
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.28 E-value=1.6e-10 Score=100.96 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=101.1
Q ss_pred HHHHhhccC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 003991 369 CVTRISKSK-SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (781)
Q Consensus 369 ~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 447 (781)
.+..+.... +...+..+..|..++..|++++|...|+-+...+|.+...|+++|.++..+|++.+|+..|.+++.++|+
T Consensus 22 sl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d 101 (157)
T PRK15363 22 SLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID 101 (157)
T ss_pred cHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 344455556 7778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003991 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEP 480 (781)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 480 (781)
++..+++.|.|++..|+.+.|.+.|+.++....
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998763
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.27 E-value=1.9e-09 Score=109.29 Aligned_cols=154 Identities=21% Similarity=0.170 Sum_probs=127.9
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (781)
Q Consensus 412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (781)
|....+++..+..++..|++++|+..+...+...|+|+..+...+.++...++..+|.+.+++++...|..+.++.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH
Q 003991 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571 (781)
Q Consensus 492 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 571 (781)
.++..|++.+|+..++..+..+|+++..|..++..|..+|+..+|...+ +..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 8888888888888888888888888888888888888888877766554 34455578888888
Q ss_pred HHHHHHHhhCC
Q 003991 572 ECLQQVLYIDK 582 (781)
Q Consensus 572 ~~~~~al~~~~ 582 (781)
..+..+.+...
T Consensus 446 ~~l~~A~~~~~ 456 (484)
T COG4783 446 IFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHhcc
Confidence 88888776653
No 125
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.26 E-value=2.5e-07 Score=96.42 Aligned_cols=221 Identities=15% Similarity=0.183 Sum_probs=161.4
Q ss_pred ccCHHHHHHHHHHHHH-hCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcC
Q 003991 428 QRELEAAISDFTEAIQ-SNPSA-----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFK 497 (781)
Q Consensus 428 ~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~ 497 (781)
.|+..+-+..|..|+. .+|.. ...|..+|..|...|+.+.|...|+++.+..-.. ..+|...|..-....
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 5667777777777765 34432 4578888888888999999999998888764332 567888888888888
Q ss_pred CHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 003991 498 DFNAAVEDLSACVKLDKE------------------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (781)
Q Consensus 498 ~~~~A~~~~~~a~~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 559 (781)
+++.|+.+.+++...-.. +..+|..++......|-++.....|++.+.+.--.|....+.|.
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 888888888887654211 13456667777778888888888888888888778888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHH---HHHHHHCCCHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHh
Q 003991 560 FYQDLANSEKALECLQQVLYIDK--RFSKAYHLR---GLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAI 632 (781)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~ 632 (781)
.+....-++++.+.|++.+.+.+ .-.+.|... ...-+.-...+.|...|++|++..|.. -.++...|..-..-
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 88888888899999988887754 334444432 222333456888899999999887742 23556667777777
Q ss_pred CCHHHHHHHHHHHHhh
Q 003991 633 GEYREAIKDYDAALDL 648 (781)
Q Consensus 633 g~~~~A~~~~~~al~~ 648 (781)
|--..|+..|++|-.-
T Consensus 600 GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 600 GLARHAMSIYERATSA 615 (835)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 8888888888877654
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.24 E-value=8.6e-11 Score=117.75 Aligned_cols=257 Identities=15% Similarity=0.078 Sum_probs=182.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 003991 422 GTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500 (781)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 500 (781)
.+-++..|+|..++.-++ .....+. .......+.+++..+|+++..+.-... ..+....+...++..+...++.+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence 345677899999997776 3333332 345677889999999998877655433 22333456667777776656777
Q ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 501 AAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578 (781)
Q Consensus 501 ~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 578 (781)
.++..++..+.... .++......|.++...|++++|++.+.+. .+.++......++...++++.|.+.++.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777666543322 34556667788888899999999988764 567888888999999999999999999998
Q ss_pred hhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991 579 YIDKRFSKAYHLRGLLLHGLG--QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (781)
Q Consensus 579 ~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 656 (781)
+.+.+..-.....+++....| ++.+|...|+......+.++..+..+|.+++.+|++++|...++++++.+|++++.+
T Consensus 159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 888877766666777776665 699999999999988888999999999999999999999999999999999999955
Q ss_pred HHHHHHHHHHHHHHHHHhch-hhHHHHHhhhcCCCcccH
Q 003991 657 VLQCLAFYQKEIALYTASKI-NSEFCWFDIDGDIDPLFK 694 (781)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~~ 694 (781)
.++.. +....|+- +.+..++.......|...
T Consensus 239 aNliv-------~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIV-------CSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHH-------HHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHH-------HHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 55444 33444544 223344444444455443
No 127
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=9.6e-08 Score=99.43 Aligned_cols=192 Identities=15% Similarity=0.177 Sum_probs=146.4
Q ss_pred cCCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHcC
Q 003991 496 FKDFNAAVEDLSACVKL-DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN----FLEAWGHLTQFYQDLA 565 (781)
Q Consensus 496 ~~~~~~A~~~~~~a~~~-~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g 565 (781)
.|+..+-+..|.+|++. +|.. ...|..+|..|...|+.+.|...|+++.+..-. -..+|...|..-.+..
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 45566666677776653 4432 457888999999999999999999999886532 2678888898888999
Q ss_pred CHHHHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 003991 566 NSEKALECLQQVLYIDKR------------------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (781)
Q Consensus 566 ~~~~A~~~~~~al~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (781)
+++.|.++++++...... ...+|..++......|-++.....|++.+.+.--.|.+-.+.|.
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999888754211 23457777888888888888888999998887778888888998
Q ss_pred HHHHhCCHHHHHHHHHHHHhhc--cCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCc
Q 003991 628 CYHAIGEYREAIKDYDAALDLE--LDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP 691 (781)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 691 (781)
.+....-+++|.+.|++.+.+. |.-.+.|. .|..+....|.-...+.|...|.++++.-|
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~----tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWN----TYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHH----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 8888888899999999988876 34444443 566666667777778888888888877554
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=6.9e-09 Score=105.32 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 003991 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (781)
Q Consensus 480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 559 (781)
|....+++..+..++..|++++|+..+...+...|+|+..+...+.++...|+.++|.+.+++++...|..+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 55666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 003991 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (781)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 639 (781)
.|++.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|.. ..+..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence 77777777777777777777777777777777777777776554443 3445555667777777
Q ss_pred HHHHHHHhhc
Q 003991 640 KDYDAALDLE 649 (781)
Q Consensus 640 ~~~~~al~~~ 649 (781)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 7777776654
No 129
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=4.1e-09 Score=99.21 Aligned_cols=276 Identities=13% Similarity=0.043 Sum_probs=199.8
Q ss_pred hHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--
Q 003991 365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI-- 442 (781)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-- 442 (781)
....++....+..|.+...+..+|.+|+...+|..|..+|++.-...|......+..+..+++.+.+..|+.......
T Consensus 28 DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~ 107 (459)
T KOG4340|consen 28 DAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN 107 (459)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 334466667778888899999999999999999999999999999999988888888888888888888877654321
Q ss_pred ----------------------------HhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003991 443 ----------------------------QSNP--SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (781)
Q Consensus 443 ----------------------------~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (781)
+.-| +..+...+.|.+.++.|+++.|++-|+.+++...-.+-+-++++.+
T Consensus 108 ~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa 187 (459)
T KOG4340|consen 108 PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA 187 (459)
T ss_pred HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH
Confidence 1123 3456778889999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHh----CCCC-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 493 NFKFKDFNAAVEDLSACVKL----DKEN-------------------------KSAYTYLGLALSSIGEYKKAEEAHLKA 543 (781)
Q Consensus 493 ~~~~~~~~~A~~~~~~a~~~----~p~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (781)
+++.+++..|+++..+.++. .|.. ..++...+-++++.|+++.|.+.+...
T Consensus 188 Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 188 HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 99999999999998887764 3331 234555677788888888887666543
Q ss_pred HhhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH--
Q 003991 544 IQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-- 619 (781)
Q Consensus 544 l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-- 619 (781)
--... -+|..+.+++..-. .+++.+...-+.-.+.++|--++.+-++-.+|.+..-|+.|..++.. +|+..
T Consensus 268 PPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk 342 (459)
T KOG4340|consen 268 PPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYK 342 (459)
T ss_pred CCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHH
Confidence 22111 13556666665433 45666777777777788887777888888888887777777765533 34321
Q ss_pred ---HHHHHHHHHHH-HhCCHHHHHHHHHHH
Q 003991 620 ---ECLYLRASCYH-AIGEYREAIKDYDAA 645 (781)
Q Consensus 620 ---~~~~~la~~~~-~~g~~~~A~~~~~~a 645 (781)
...+.+-..+. ..-..++|.+-+...
T Consensus 343 ~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 343 FLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 22233333332 234566666555544
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.17 E-value=1.2e-08 Score=99.87 Aligned_cols=104 Identities=21% Similarity=0.226 Sum_probs=78.2
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---LIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW 452 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 452 (781)
.++..++..|..++..|+|++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 467778888988999999999999999999888887654 4888889999999999999999999888876 4567
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCC
Q 003991 453 KRRGQARAALGE------------------SVEAIQDLSKALEFEPNS 482 (781)
Q Consensus 453 ~~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~ 482 (781)
+.+|.++...+. ..+|+..|++.++..|++
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S 157 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS 157 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence 777776544331 234555566666666654
No 131
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.5e-10 Score=110.68 Aligned_cols=113 Identities=22% Similarity=0.217 Sum_probs=98.3
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhh----hhhHHHHHHhhhCHHHHHHHHHHH
Q 003991 21 CEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQD----ICNRAFCYSQLELHKHVIRDCDKA 95 (781)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~----~~~rA~~~~~~~~~~~A~~~~~~a 95 (781)
-.|+-++...+-...|...|..||++|..++|..|+.+|+++|... +++.. |.|||+|.+-+|+|..|+.+|.+|
T Consensus 66 qslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 66 QSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444555578899999999999999999999999999886 55443 999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 003991 96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133 (781)
Q Consensus 96 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 133 (781)
+.++|++.++|+|=+.|++.+.++++|..+-+..+++.
T Consensus 146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999988886544
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.14 E-value=1.1e-09 Score=114.07 Aligned_cols=113 Identities=22% Similarity=0.284 Sum_probs=97.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (781)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (781)
+...|..++..|+|++|+.+|+++++.+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 55678888888999999999999999999888888888999988999999999999998888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 003991 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKF 496 (781)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 496 (781)
++++|+..|++++.++|++..+...++.+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888888888877777665444
No 133
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.13 E-value=6.8e-11 Score=119.64 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-hhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003991 34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (781)
Q Consensus 34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~-~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 112 (781)
+.+...+..++.+|..++|+.|+..|++||+++|| ...+.+||.++++.+++..|+.|+.+||+++|.+.++|+++|.+
T Consensus 2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a 81 (476)
T KOG0376|consen 2 SSAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTA 81 (476)
T ss_pred chhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHH
Confidence 35666778999999999999999999999999965 45578999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 003991 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153 (781)
Q Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 153 (781)
.++++++.+|+..|++...+.|+.+.....+.+.+....+-
T Consensus 82 ~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 82 VMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE 122 (476)
T ss_pred HHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888887766643
No 134
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.11 E-value=1.3e-08 Score=97.41 Aligned_cols=172 Identities=20% Similarity=0.220 Sum_probs=117.2
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW 452 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 452 (781)
.++..++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|+++.|+..+++.+...|++ +.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 357889999999999999999999999999988764 5788999999999999999999999999999876 4578
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 003991 453 KRRGQARAALG-----------ESVEAIQDLSKALEFEPNSADIL---HERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (781)
Q Consensus 453 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 518 (781)
+.+|.++.... ...+|+..|+..+...|++..+- ..+..+- ..+ ..
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~--------------~~l------a~ 142 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR--------------NRL------AE 142 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH--------------HHH------HH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH--------------HHH------HH
Confidence 88888876542 24577888888888888763321 1111110 000 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHH
Q 003991 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKA 570 (781)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A 570 (781)
--+.+|..|.+.|.+..|+..++.+++..|+. ..++..++..|..+|..+.|
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 12346667777777777777777777776665 35566677777777776643
No 135
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.10 E-value=6e-08 Score=94.02 Aligned_cols=302 Identities=14% Similarity=0.141 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPS------AGEA 451 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~ 451 (781)
+......|..++...++.+|+..+.+.+..-.+.. ..+-.+..+...+|.|++++.+--..+....+ ..++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778889999999999999999987654433 34445667888899999887776554443211 1357
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 003991 452 WKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAY 520 (781)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~ 520 (781)
+.+++..+....++.+++.+-+..+.+.... ..+...++..+..++.++++++.|+.+++...++ -.++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 8889999999999999999998888765433 3567779999999999999999999999875443 2567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCC
Q 003991 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNF----------LEAWGHLTQFYQDLANSEKALECLQQVLYID------KRF 584 (781)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~ 584 (781)
..+|..+....++++|..+..++.++.... ..+++.++..+..+|..-.|.++.+++.++. +..
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 889999999999999999999998874322 3567788999999999999999999987653 223
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHhhccCcH
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYRE-----AIKDYDAALDLELDSM 653 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~~ 653 (781)
.....-+|.+|...|+.+.|..-|+.+...-.. ..+++...|.++....-..+ |+++-++++++...-.
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG 325 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIG 325 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhh
Confidence 455677899999999999999999999865321 24566667777765544444 8888888887764322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 003991 654 EKFVLQCLAFYQKEIALYTASKINSEFCWF 683 (781)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 683 (781)
.-+..-......+..|...|.-++-...+
T Consensus 326 -~K~~vlK~hcrla~iYrs~gl~d~~~~h~ 354 (518)
T KOG1941|consen 326 -AKLSVLKLHCRLASIYRSKGLQDELRAHV 354 (518)
T ss_pred -hhHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 22222223344444444444444333333
No 136
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.7e-09 Score=98.99 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------cc-cchhhhhhHHHHHHhhhCHHHHHHHH
Q 003991 32 VMASAITARIELAKLCSLRNWSKAIRILDSLLA------------------QS-YEIQDICNRAFCYSQLELHKHVIRDC 92 (781)
Q Consensus 32 ~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~------------------~~-~~~~~~~~rA~~~~~~~~~~~A~~~~ 92 (781)
.+..-...|.+||.+|..|+|.+|+..|..||. ++ ...+++.|.+.|++..|+|-++++.|
T Consensus 174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~ 253 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC 253 (329)
T ss_pred hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence 344456778999999999999999999999984 23 33455889999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHH
Q 003991 93 DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFL 144 (781)
Q Consensus 93 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 144 (781)
..+|..+|++.+|||++|.++...=+.++|..+|.++|++.|.-...+..-+
T Consensus 254 seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrEl 305 (329)
T KOG0545|consen 254 SEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSREL 305 (329)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 9999999999999999999999999999999999999998887766554333
No 137
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.10 E-value=3.3e-10 Score=87.51 Aligned_cols=67 Identities=30% Similarity=0.335 Sum_probs=62.3
Q ss_pred chhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 003991 68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG-RKEEALSVWEKGYEHAL 134 (781)
Q Consensus 68 ~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~~ 134 (781)
++..+.++|.+++.+|+|++|+..|+++|+++|+++.+++.+|.++..+| ++++|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56678999999999999999999999999999999999999999999999 79999999999977665
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.08 E-value=3.1e-10 Score=91.44 Aligned_cols=80 Identities=30% Similarity=0.352 Sum_probs=72.6
Q ss_pred cCCHHHHHHHHHHHHhccc---chhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 003991 49 LRNWSKAIRILDSLLAQSY---EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (781)
Q Consensus 49 ~g~~~~A~~~y~~ai~~~~---~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 125 (781)
+|+|++|+.+|.++++..| ++..++++|.|++++|+|++|+..+++ ++.+|.++..++.+|.++.++|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6899999999999999996 455678899999999999999999999 999999999999999999999999999999
Q ss_pred HHHH
Q 003991 126 WEKG 129 (781)
Q Consensus 126 ~~~a 129 (781)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.07 E-value=3.2e-08 Score=96.87 Aligned_cols=181 Identities=15% Similarity=0.053 Sum_probs=121.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 003991 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYT 521 (781)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~ 521 (781)
.+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++..|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45667777777777788888888888887777776443 4677777777778888888887777777765 35666
Q ss_pred HHHHHHHHcCC------------------HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003991 522 YLGLALSSIGE------------------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (781)
Q Consensus 522 ~la~~~~~~g~------------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 583 (781)
.+|.++...+. ..+|+..|++.++..|+...+ .+|...+..+- ..
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~---~~ 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLK---DR 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHH---HH
Confidence 67766544431 235666666666666665221 11111111110 00
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAA 645 (781)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (781)
...--+..|..|.+.|.|..|+.-++.+++..|+. .++++.++..|..+|..++|.......
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 01123456888889999999999999999888874 578889999999999999988766543
No 140
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.06 E-value=1.8e-08 Score=96.40 Aligned_cols=174 Identities=23% Similarity=0.174 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYTY 522 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~ 522 (781)
...++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..|+++.|+..+++.++..|+++ .+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4566777777777777777777777777776654 55677777777777777777777777777777653 46666
Q ss_pred HHHHHHHcCC-----------HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 003991 523 LGLALSSIGE-----------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591 (781)
Q Consensus 523 la~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 591 (781)
+|.++..... ..+|+..|+..+...|++..+ .+|...+..+-. .-..--+.+
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~---~la~~e~~i 147 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRN---RLAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHH---HHHHHHHHH
Confidence 6666655421 224455555555555543211 111111111000 001123456
Q ss_pred HHHHHHCCCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhCCHHHHH
Q 003991 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAI 639 (781)
Q Consensus 592 a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 639 (781)
|..|.+.|.|..|+..++.+++..|+.+ +++..++.+|.++|..+.|.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888999999999999988888864 57888888888888887544
No 141
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.03 E-value=1.6e-06 Score=86.10 Aligned_cols=223 Identities=32% Similarity=0.408 Sum_probs=149.1
Q ss_pred cCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003991 429 RELEAAISDFTEAIQSNPS--AGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVE 504 (781)
Q Consensus 429 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~ 504 (781)
+.+..+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555555444 244555556666666666666666666655 455555566666666666666666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 505 DLSACVKLDKENKSAYTYLGL-ALSSIGEYKKAEEAHLKAIQLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (781)
Q Consensus 505 ~~~~a~~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (781)
.+..++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 666666655555444444444 66677777777777777766555 34455555556666777777777777777777
Q ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 581 DKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 581 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
.+. ....+..++..+...+++..|+..+..++...|.....+..++..+...|.++++...+.+++...|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 777 57777778888888888888888888888877776677777777777667788888888888888876
No 142
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.01 E-value=1.7e-06 Score=85.99 Aligned_cols=224 Identities=29% Similarity=0.351 Sum_probs=196.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHH
Q 003991 394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQ--SNPSAGEAWKRRGQARAALGESVEAI 469 (781)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 469 (781)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 57788888888888888776 378888999999999999999999999987 67888889999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 470 QDLSKALEFEPNSADILHERGI-VNFKFKDFNAAVEDLSACVKLDK---ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (781)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (781)
..+..++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988877566666666 89999999999999999988776 3456667777778889999999999999999
Q ss_pred hCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991 546 LDRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (781)
Q Consensus 546 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (781)
..+. ....+..++..+...+++..|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999 68999999999999999999999999999999987777888888888888899999999999999887
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.00 E-value=1.2e-08 Score=88.94 Aligned_cols=105 Identities=24% Similarity=0.322 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKR 454 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 454 (781)
++.++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|+.+|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4566777777777778877887777777777665 4567777777777777777777777777776664 456777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991 455 RGQARAALGESVEAIQDLSKALEFEPNSADI 485 (781)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 485 (781)
+|.++...|++++|+.++.+++...|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7777777777777777777777777766544
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.00 E-value=9.2e-09 Score=89.67 Aligned_cols=104 Identities=14% Similarity=0.092 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---HHHHHH
Q 003991 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYL 624 (781)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 624 (781)
+..++.+|..+...|++++|+..|++++...|++ +.+++.+|.++...|++++|+..|++++...|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3567778888888888888888888888877765 4677888888888888888888888888877764 567888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 625 RASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 625 la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
+|.++..+|++++|..+++++++..|++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 888888888888888888888888888764
No 145
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.97 E-value=2.7e-08 Score=107.92 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHH
Q 003991 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL--------ANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHK 602 (781)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~ 602 (781)
...|+.+|+++++.+|++..++..++.++... .+...+....++++.. +|..+.++..+|......|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 45566666666666666666655555554332 2234556666666553 6777888999999999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 003991 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (781)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 664 (781)
+|...+++++.++|+ ..+|..+|.++...|++++|+..|++|+.++|.++..+....++++
T Consensus 438 ~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f~ 498 (517)
T PRK10153 438 EAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVFQ 498 (517)
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhcccc
Confidence 999999999999994 8899999999999999999999999999999999875544444433
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.96 E-value=2.3e-09 Score=82.75 Aligned_cols=67 Identities=30% Similarity=0.530 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhcc
Q 003991 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG-EYREAIKDYDAALDLEL 650 (781)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 650 (781)
++..|..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46778888888888888888888888888888888888888888888888 68888888888888877
No 147
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.96 E-value=1.1e-07 Score=85.67 Aligned_cols=197 Identities=20% Similarity=0.139 Sum_probs=122.8
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (781)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (781)
...+..++.+|..|-..|-+.-|.-.|.+++.+.|.-+.++..+|..+...|+|+.|.+.|...++++|...-+..+.|.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 34466778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-CVKLDKENKSAYTYLGLALSSIGEYKKA 536 (781)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~~~~la~~~~~~g~~~~A 536 (781)
.++--|++.-|.+-+.+-.+.+|++|---..+-.. ...-++.+|..-+.+ +...+.+ ...|.. +-+.+|+..+
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e-~WG~~i---V~~yLgkiS~- 215 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKE-QWGWNI---VEFYLGKISE- 215 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHh-hhhHHH---HHHHHhhccH-
Confidence 88888888888888888888888776422111111 122345555544433 3222211 111111 1112222221
Q ss_pred HHHHHHHHhhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 537 EEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (781)
Q Consensus 537 ~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (781)
...++++.....++ .+.++.+|..+...|+.++|...|+-++..
T Consensus 216 e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 216 ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 12222322222222 345666666666666666666666666543
No 148
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=9.7e-08 Score=86.05 Aligned_cols=197 Identities=17% Similarity=0.154 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (781)
+..++..|..|-..|-+.-|...|.+++.+.|+-++++..+|..+...|+++.|.+.|...++++|....+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 45677788888889999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574 (781)
Q Consensus 495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 574 (781)
.-|++.-|.+-+.+-.+.+|++|---..+-. -...-++.+|...+.+-.+...+....|...+. ..|+.. -...+
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLgkiS-~e~l~ 219 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLGKIS-EETLM 219 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHhhcc-HHHHH
Confidence 9999999999999999999988743222211 123345666665554433322222222222221 123221 11233
Q ss_pred HHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991 575 QQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (781)
Q Consensus 575 ~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (781)
+++.....++ .++++.+|..+...|+.++|...|+-++..+-
T Consensus 220 ~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 220 ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 3333322222 45688888888888888888888888877543
No 149
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.94 E-value=3.9e-08 Score=91.69 Aligned_cols=121 Identities=22% Similarity=0.271 Sum_probs=90.2
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q 003991 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (781)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 452 (781)
..+..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.++.+++...|.+...+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 345567778888888888888888888888888776553 45778888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 003991 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (781)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~ 516 (781)
..+|.++...|+...+...+..++. .+++|++++++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 8888888887777666655555432 2566677777777766665
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.94 E-value=3.4e-09 Score=80.59 Aligned_cols=65 Identities=26% Similarity=0.281 Sum_probs=59.5
Q ss_pred hhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 003991 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS 137 (781)
Q Consensus 73 ~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 137 (781)
+.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|++++++.|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36789999999999999999999999999999999999999999999999999999988888764
No 151
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=6.5e-07 Score=83.84 Aligned_cols=256 Identities=15% Similarity=0.042 Sum_probs=189.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 003991 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (781)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 467 (781)
.+.++..|+|..++..-++.-... ........+.+.|..+|++...+.-....- .....+...++.....-++.+.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 455777899999888777654433 667788889999999998866544332221 1122344455555555555555
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 468 AIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (781)
Q Consensus 468 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (781)
-+....+.+... ..+......-|.++...+++++|++..... .+.++...-..++.++.+++-|...++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555444443322 223345566678899999999999988763 3456666667888899999999999999988
Q ss_pred hCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH
Q 003991 546 LDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (781)
Q Consensus 546 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 621 (781)
++.+. .+..||..+.. .+.+.+|.-+|+..-...|..+.....++.++..+|+|++|...++.++..+++++++
T Consensus 166 ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 IDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred cchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 86543 34445554443 3568899999999988788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHH-HHHHHHhhccCcHH
Q 003991 622 LYLRASCYHAIGEYREAIK-DYDAALDLELDSME 654 (781)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~ 654 (781)
+.++-.+-...|...++.. .+.+.....|+++-
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999999998877665 56677777888764
No 152
>PRK11906 transcriptional regulator; Provisional
Probab=98.94 E-value=6.7e-08 Score=99.02 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 003991 383 FRLSRGIAQVNEGK---YASAISIFDQIL---KEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPS 447 (781)
Q Consensus 383 ~~~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 447 (781)
.++.+|...+..+. ...|+.+|.+++ +.+|..+.++..++.|++.. .+..+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 44778887776664 467888999999 88999999999999988765 2355677888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 003991 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA- 526 (781)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~- 526 (781)
++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888765544433333
Q ss_pred HHHcCCHHHHHHHHHHH
Q 003991 527 LSSIGEYKKAEEAHLKA 543 (781)
Q Consensus 527 ~~~~g~~~~A~~~~~~a 543 (781)
.+-....++|+..|-+-
T Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 417 MYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHcCCchhhhHHHHhhc
Confidence 34445667777776553
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3e-08 Score=95.62 Aligned_cols=122 Identities=23% Similarity=0.203 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Q 003991 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLS 609 (781)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~ 609 (781)
.+..+.-++.-+..+|++.+.|..||.+|+..|++..|...|.+++++.|++++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4556667777788888888889999999999999999999999999888888888888888876543 4577888899
Q ss_pred HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
+++..+|.+..+.+.+|..++..|+|.+|...++..++..|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999988776543
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.7e-08 Score=94.96 Aligned_cols=119 Identities=26% Similarity=0.311 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 003991 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSA 508 (781)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~ 508 (781)
+..+.-++.-+..+|++.+.|..+|.+|+.+|++..|...|.+++++.|++++.+..+|.+++... ...++...+++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 334444444555555555555555555555555555555555555555555555555555544332 23455555555
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Q 003991 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (781)
Q Consensus 509 a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (781)
++..+|.+..+...+|..++..|+|.+|...++..+...|.+
T Consensus 219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 555555555555555555555555555555555555554433
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.93 E-value=2.5e-08 Score=101.01 Aligned_cols=168 Identities=17% Similarity=0.128 Sum_probs=108.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC--C----HHHHH
Q 003991 523 LGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDL-ANSEKALECLQQVLYIDKR--F----SKAYH 589 (781)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~--~----~~~~~ 589 (781)
.+.++... ++++|+.++++++.+.-. -...+..+|.+|... |++++|+++|++++..... . ...+.
T Consensus 81 Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~ 159 (282)
T PF14938_consen 81 AANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLL 159 (282)
T ss_dssp HHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHH
Confidence 34444333 666666666666654221 145667788888887 8999999999998876321 1 34567
Q ss_pred HHHHHHHHCCCHHHHHHHHHHhhccCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 003991 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSN-------IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (781)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 662 (781)
.+|.++...|+|++|++.|++.....-++ ...++..+.|++..|++..|...+++....+|......-...+.
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 88999999999999999999987643221 14566788899999999999999999999998654433222222
Q ss_pred HHHHHHHHHHHhchhhHHHHHhhhcCCCc
Q 003991 663 FYQKEIALYTASKINSEFCWFDIDGDIDP 691 (781)
Q Consensus 663 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 691 (781)
-.-.+..-.....+..++..|+....++|
T Consensus 240 ~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 240 DLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 22333333445567788888887777776
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.93 E-value=1.3e-08 Score=84.42 Aligned_cols=99 Identities=29% Similarity=0.489 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (781)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (781)
+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777777777788888787777777777777777788887778888888888888877777777778888888888
Q ss_pred CCHHHHHHHHHHHHhhccC
Q 003991 633 GEYREAIKDYDAALDLELD 651 (781)
Q Consensus 633 g~~~~A~~~~~~al~~~p~ 651 (781)
|++++|...+.++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888887777663
No 157
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.92 E-value=8.1e-07 Score=100.40 Aligned_cols=216 Identities=13% Similarity=0.053 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991 399 SAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSA----GEAWKRRGQARAALGESVEAIQDLS 473 (781)
Q Consensus 399 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 473 (781)
+..+-|++.+..+|+....|...-..+.+.++.++|.+.+++|+.. ++.. ..+|..+-.+...-|.-+.-.+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 4456677788888888888888888888888888888888888863 3332 2345444444555566677777888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cH
Q 003991 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FL 551 (781)
Q Consensus 474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~ 551 (781)
+|.+... ...++..|..+|...+.+++|.++++..++...+....|..++..++..++-+.|...+.+|++.-|. +.
T Consensus 1522 RAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1522 RACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 8877653 34577778888888888888888888888888777888888888888888888888888888888887 67
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (781)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (781)
......|.+.++.|+.+.+...|+..+..+|...+.|.-+...-.+.|+.+.+...|++++.+.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 7777888888888888888888888888888888888888888888888888888888887653
No 158
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.92 E-value=1.1e-09 Score=105.00 Aligned_cols=226 Identities=18% Similarity=0.106 Sum_probs=146.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (781)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (781)
+-..|..|+.+|.|++|+.+|.+.+..+|.++..+.+.|.+|++...|..|...+..++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH---------HHHHHHHcCCHH
Q 003991 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---------LGLALSSIGEYK 534 (781)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~---------la~~~~~~g~~~ 534 (781)
...+|.+-++.++.+.|++.++...++.+-. ..++ +-+.+..|....+... -|..+...|.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 9999999999999999998776655554432 1111 1122222322222111 233444445555
Q ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc
Q 003991 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (781)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (781)
.++.++..-+.....+...-.+ +..+.+..+++.++....+++..+|.........+.+-.-.|...++...++.++.+
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~ 330 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV 330 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence 5555554444333322222222 334444445555555555555444443333333333333334444555555555555
Q ss_pred CCCC
Q 003991 615 DPSN 618 (781)
Q Consensus 615 ~p~~ 618 (781)
.|.+
T Consensus 331 ~P~~ 334 (536)
T KOG4648|consen 331 APAV 334 (536)
T ss_pred cccc
Confidence 4443
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.91 E-value=8e-08 Score=86.63 Aligned_cols=128 Identities=18% Similarity=0.156 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 003991 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRR 455 (781)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 455 (781)
...+..+...+..++...+...++.+++.+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+.+
T Consensus 12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344555555667888888888888888888877 4567778888888888888888888888876554 3467778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003991 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (781)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 510 (781)
+.++...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888888888888888755 23333446677777888888888888888777663
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.90 E-value=3.2e-08 Score=100.23 Aligned_cols=183 Identities=19% Similarity=0.231 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHHcCCHHHHH
Q 003991 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKAL 571 (781)
Q Consensus 498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~ 571 (781)
++++|...|.++ |..|...|++++|...|.++...... -...+...+.++.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 556666666553 55666667777777777766554321 134555666666555 999999
Q ss_pred HHHHHHHhhCC--CC----HHHHHHHHHHHHHC-CCHHHHHHHHHHhhccCCC--C----HHHHHHHHHHHHHhCCHHHH
Q 003991 572 ECLQQVLYIDK--RF----SKAYHLRGLLLHGL-GQHKKAIKDLSSGLGIDPS--N----IECLYLRASCYHAIGEYREA 638 (781)
Q Consensus 572 ~~~~~al~~~~--~~----~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A 638 (781)
.+|++++.+.- +. ...+..+|.+|... |++++|+++|++|+..... . ..++..+|.++..+|+|++|
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 99999987632 21 45688899999998 9999999999999987322 2 35778999999999999999
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHH
Q 003991 639 IKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE 695 (781)
Q Consensus 639 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 695 (781)
+..|+++....-++....+.....++..++++...++...|...|+.....+|+|..
T Consensus 175 ~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 175 IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 999999988654443322333345567777888889999999999999988987754
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.90 E-value=5.6e-08 Score=90.59 Aligned_cols=118 Identities=20% Similarity=0.223 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003991 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489 (781)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 489 (781)
....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 345566777777777777777777777777665542 34666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Q 003991 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (781)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (781)
|.++...|+...+...+..++. .+++|++++++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 6666666665555544444322 2455666666666665554
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.89 E-value=9.7e-08 Score=103.68 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=82.0
Q ss_pred cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHh--CC
Q 003991 380 SVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQR--------ELEAAISDFTEAIQS--NP 446 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~p 446 (781)
.+..++..|..++..++ +..|+.+|+++++.+|+++.++..++.++.... +...+.....+++.. +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 34445677777766554 678888888888888888888877777665432 123334444443332 44
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 003991 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (781)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~ 517 (781)
..+.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|++.|++|+.++|.++
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 4455555555555555566666666666666555 345555555555556666666666666655555554
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.89 E-value=1.1e-07 Score=85.81 Aligned_cols=117 Identities=22% Similarity=0.121 Sum_probs=84.2
Q ss_pred HcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHH
Q 003991 529 SIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHK 602 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~ 602 (781)
..++...+...++..+...|+. ..+.+.+|.+++..|++++|+..|+.++...|+. +.+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4667777777777777777766 4566677777778888888888888877766543 346667788888888888
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003991 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (781)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 646 (781)
+|+..++.. ...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888887652 3334446677778888888888888888887764
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=98.87 E-value=5.3e-08 Score=85.58 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=103.5
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (781)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (781)
.+..+....+...+..+..|..++..|++++|..+|+-+.-.+|.++..+..+|.++..+++|++|+..|..+..+++++
T Consensus 25 tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 25 TLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND 104 (165)
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 44555666777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 483 (781)
+...+..|.|+..+|+.+.|+.+|..++. .|.+.
T Consensus 105 p~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 105 YRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred CCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 99999999999999999999999999998 45443
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.87 E-value=1e-08 Score=78.01 Aligned_cols=64 Identities=31% Similarity=0.408 Sum_probs=53.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5678888888888888888888888888888888888888888888888888888888888874
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.86 E-value=3.7e-08 Score=81.67 Aligned_cols=97 Identities=28% Similarity=0.414 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (781)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (781)
++.+|..++..|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCC
Q 003991 464 ESVEAIQDLSKALEFEP 480 (781)
Q Consensus 464 ~~~~A~~~~~~al~~~p 480 (781)
+++.|...+.+++...|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666655544
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.86 E-value=8.1e-09 Score=83.16 Aligned_cols=81 Identities=32% Similarity=0.423 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003991 564 LANSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641 (781)
Q Consensus 564 ~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 641 (781)
.|+++.|+.++++++...|. +...++.+|.++.+.|++++|+.++++ ...+|.++...+.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56777777777777777774 345566677777777777777777777 666676667777777777777777777777
Q ss_pred HHHH
Q 003991 642 YDAA 645 (781)
Q Consensus 642 ~~~a 645 (781)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7664
No 168
>PRK11906 transcriptional regulator; Provisional
Probab=98.86 E-value=2e-07 Score=95.56 Aligned_cols=158 Identities=12% Similarity=0.033 Sum_probs=106.1
Q ss_pred HHHHHHHHHcc---CHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCH
Q 003991 419 IGRGTARAFQR---ELEAAISDFTEAI---QSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSA 483 (781)
Q Consensus 419 ~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 483 (781)
+..|...+..+ ..+.|+.+|.+++ .++|....++..++.|+... ....+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 66666665554 3566888888888 88888888888888887654 234566667777777777777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH-HH
Q 003991 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQ 562 (781)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~ 562 (781)
.++..+|.++...++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777654333222222 22
Q ss_pred HcCCHHHHHHHHHH
Q 003991 563 DLANSEKALECLQQ 576 (781)
Q Consensus 563 ~~g~~~~A~~~~~~ 576 (781)
-....++|+..|-+
T Consensus 419 ~~~~~~~~~~~~~~ 432 (458)
T PRK11906 419 VPNPLKNNIKLYYK 432 (458)
T ss_pred cCCchhhhHHHHhh
Confidence 24445555555543
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.86 E-value=6.5e-08 Score=89.89 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHH
Q 003991 395 GKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAI 469 (781)
Q Consensus 395 g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 469 (781)
..|..+...+...++.++.. ...++.+|.++...|++++|+..|.+++.+.|+. +.++..+|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555554444433 4455677777777777777777777777665542 346677777777777777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 470 QDLSKALEFEPNSADILHERGIVNF 494 (781)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~~~~ 494 (781)
..+++++.+.|.....+..+|.++.
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 7777777777766666666666666
No 170
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.85 E-value=8.3e-08 Score=78.95 Aligned_cols=112 Identities=20% Similarity=0.235 Sum_probs=95.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHHcC
Q 003991 43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL----QAYILKGCAFSALG 117 (781)
Q Consensus 43 ~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g 117 (781)
+-.+-..|+.+.|++.|.++|.+. .++.+|.|||.++--+|+-++|+.++++|+++--.-. .+|+.+|.+|..+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 334557899999999999999999 7889999999999999999999999999999974433 38999999999999
Q ss_pred CHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHcc
Q 003991 118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQD 156 (781)
Q Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (781)
+.+.|..+|+.|.++ +++-..-+++.++|....+.+-
T Consensus 130 ~dd~AR~DFe~AA~L--GS~FAr~QLV~lNPYAAlCN~M 166 (175)
T KOG4555|consen 130 NDDAARADFEAAAQL--GSKFAREQLVELNPYAALCNQM 166 (175)
T ss_pred chHHHHHhHHHHHHh--CCHHHHHHHHhcChHHHHHHHH
Confidence 999999999999654 4566667778888877655433
No 171
>PRK15331 chaperone protein SicA; Provisional
Probab=98.84 E-value=3.7e-08 Score=86.56 Aligned_cols=109 Identities=6% Similarity=0.027 Sum_probs=94.9
Q ss_pred HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHH
Q 003991 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (781)
Q Consensus 544 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (781)
..+.++..+..+..|.-++..|++++|...|+-+...+|.++..+..||.++..+++|++|+..|..+..+++++|...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 34455667788888888999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 624 LRASCYHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
..|.||..+|+.+.|+.+|+.+++ .|.+.
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 999999999999999999999988 45543
No 172
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=7.4e-07 Score=100.71 Aligned_cols=218 Identities=13% Similarity=0.080 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 003991 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS----ADILHERGIVNFKFKDFNAAVED 505 (781)
Q Consensus 431 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~~~~~~A~~~ 505 (781)
-.+..+.|++.+.-+|+..-.|..+...+...++.++|.+..++|+.. ++.. ..+|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 345677889999999999999999999999999999999999999975 3433 33566666666666777778888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--
Q 003991 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-- 583 (781)
Q Consensus 506 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-- 583 (781)
|++|.+... ...++..|..+|...+.+++|.++++..++...+....|..++..+++.++-+.|...+.+|+..-|.
T Consensus 1520 FeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 999887643 35678889999999999999999999999999988999999999999999999999999999999887
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
+.......|.+.++.|+.+.+...|+-.+..+|...+.|.-+...-.+.|+.+-+...|++++.+.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 778888899999999999999999999999999999999999999999999999999999999875
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.82 E-value=7.5e-08 Score=89.45 Aligned_cols=125 Identities=12% Similarity=0.067 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHH
Q 003991 567 SEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKD 641 (781)
Q Consensus 567 ~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~ 641 (781)
+..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445555554444444433 5567888888888888888888888888776653 45788899999999999999999
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhH-------HHHHhhhcCCCc
Q 003991 642 YDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSE-------FCWFDIDGDIDP 691 (781)
Q Consensus 642 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-------~~~~~~~~~~~p 691 (781)
|++++.++|.....+..++.++...|......|++..| +.+|.++...+|
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999988888888888888888777777776644 445555555555
No 174
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1e-07 Score=95.20 Aligned_cols=147 Identities=27% Similarity=0.266 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Q 003991 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564 (781)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 564 (781)
.....|..+++.|+|..|...|++++..-.... .-+.++.... .++ -..++.+++.++.++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~--~~~-----k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKA--EAL-----KLACHLNLAACYLKL 270 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHH--HHH-----HHHHhhHHHHHHHhh
Confidence 445567777777777777777777765432110 0000111100 001 134667788888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHH-HHHHH
Q 003991 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA-IKDYD 643 (781)
Q Consensus 565 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~ 643 (781)
++|.+|+...++++..+|++..+++..|.++..+|+|+.|+..|++++++.|+|..+...+..+-.+..++.+. .+.|.
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888877777777777766665544 56677
Q ss_pred HHHhhcc
Q 003991 644 AALDLEL 650 (781)
Q Consensus 644 ~al~~~p 650 (781)
.++...+
T Consensus 351 ~mF~k~~ 357 (397)
T KOG0543|consen 351 NMFAKLA 357 (397)
T ss_pred HHhhccc
Confidence 6666544
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.77 E-value=3.2e-07 Score=90.40 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHH
Q 003991 380 SVDFRLSRGIAQ-VNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW 452 (781)
Q Consensus 380 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 452 (781)
+....|..|..+ +..|+|++|+..|+..++.+|++ +.+++.+|.+|+..|++++|+..|.+++...|++ ++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 356677778776 56799999999999999999987 5799999999999999999999999999988874 7788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADI 485 (781)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 485 (781)
+.+|.++...|++++|...|+++++..|+...+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 999999999999999999999999999987654
No 176
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.77 E-value=1.1e-06 Score=85.53 Aligned_cols=234 Identities=17% Similarity=0.209 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC--HHHHH
Q 003991 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEP----NS--ADILH 487 (781)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~--~~~~~ 487 (781)
-....|.-++...++++|+....+.+..-.+.. ..+-.+..+...+|.+++++..--..+.... .. -+++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888899999999988887544432 3444556777888888887766544443321 11 45788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHH
Q 003991 488 ERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGH 556 (781)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~ 556 (781)
+++..+....++.+++.+-+..+..-... ..+...++.++..++.++++++.|+++++...++ ..++..
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 89999999999999999988887764332 3566779999999999999999999999875443 467889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC------CCCHH
Q 003991 557 LTQFYQDLANSEKALECLQQVLYIDKRF----------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID------PSNIE 620 (781)
Q Consensus 557 la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~ 620 (781)
+|.++....++++|.-+..++.++.... ..+++.++..+..+|....|.++.+++.++. +-...
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar 247 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR 247 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999999999998764321 3457788999999999999999999997762 22356
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991 621 CLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (781)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (781)
....+|.+|...|+.+.|..-|++|...-.
T Consensus 248 c~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 248 CLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 777899999999999999999999987643
No 177
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.76 E-value=4.2e-05 Score=75.61 Aligned_cols=297 Identities=16% Similarity=0.108 Sum_probs=212.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHH
Q 003991 384 RLSRGIAQVNEGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQARA 460 (781)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 460 (781)
-+..|.+....|+-..|.+.-.+.-+.-.. .+-++..-+..-.-.|+++.|.+-|+.++. +|..- -.+..+-.--.
T Consensus 87 ALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAq 165 (531)
T COG3898 87 ALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQ 165 (531)
T ss_pred HHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHH
Confidence 345677777889999999988887654333 345566667888889999999999998875 33321 12222333335
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCH---HHHHHHHHHH-HHcCCH
Q 003991 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD---KENK---SAYTYLGLAL-SSIGEY 533 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---p~~~---~~~~~la~~~-~~~g~~ 533 (781)
..|..+.|..+-+++....|.-+.++...-...+..|+|+.|++..+...... ++.. .+...-+... .-..+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 67999999999999999999999988888888899999999999988765432 2211 1111112222 123467
Q ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh--
Q 003991 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG-- 611 (781)
Q Consensus 534 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-- 611 (781)
..|...-.+++++.|+...+-..-+..++..|+..++-.+++.+.+..|. +.+ +..|....--+.++.-++++
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKK 320 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999998885 333 33343333334445444444
Q ss_pred -hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHH-HHHhchhhHHHHHhhhcC-
Q 003991 612 -LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL-YTASKINSEFCWFDIDGD- 688 (781)
Q Consensus 612 -l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~- 688 (781)
..+.|++.+..+..+..-+..|++..|..--+.+....|... .|.-++... -..|+-.+...|+.++..
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres--------~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES--------AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh--------HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 456899999999999999999999999999999999998754 223333332 234666667777766543
Q ss_pred -CCcccH
Q 003991 689 -IDPLFK 694 (781)
Q Consensus 689 -~~p~~~ 694 (781)
-+|.|.
T Consensus 393 PrdPaW~ 399 (531)
T COG3898 393 PRDPAWT 399 (531)
T ss_pred CCCCccc
Confidence 345443
No 178
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.76 E-value=2.1e-05 Score=85.85 Aligned_cols=227 Identities=13% Similarity=0.009 Sum_probs=163.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 003991 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (781)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 470 (781)
....+++.+|+..+.+.++..|+...+....|.++.++|+.++|..+++..-...+++...+..+-.+|..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45678889999999999999999888888889999999999999988887777777888888888889999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH---------HHHHHHH
Q 003991 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IGEY---------KKAEEAH 540 (781)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g~~---------~~A~~~~ 540 (781)
+|++++..+|. .+..+.+-.+|.+.+.|.+-.+.--+..+..|.++........+..+ .... .-|...+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999999997 77778888888888888776666666666778776544443333332 2222 2345555
Q ss_pred HHHHhhC-ccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991 541 LKAIQLD-RNF-LEAWGHLTQFYQDLANSEKALECLQQVL--YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (781)
Q Consensus 541 ~~al~~~-~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (781)
++.++.. +-. ..-....-.++..+|++++|...+..-+ ...+.+...-......+...+++.+-.+...+++...+
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 6666554 211 1112223345666888999988884332 33344444445566777788888888888888888888
Q ss_pred CC
Q 003991 617 SN 618 (781)
Q Consensus 617 ~~ 618 (781)
++
T Consensus 258 Dd 259 (932)
T KOG2053|consen 258 DD 259 (932)
T ss_pred cc
Confidence 86
No 179
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=4e-06 Score=78.67 Aligned_cols=230 Identities=15% Similarity=0.042 Sum_probs=170.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 003991 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501 (781)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 501 (781)
.+-++..|+|..++..-.+.-... ........+.+.|..+|++...+.-....- .....+...++.....-++.+.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 445667889998888777665443 667777888899999998876655443332 1123455666666666666666
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 502 AVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (781)
Q Consensus 502 A~~~~~~a~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 579 (781)
-+..+.+.+... ..+......-|.++...|++++|++..... .+.++...-..++.+..+.+-|.+.+++...
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666555544432 233345556688899999999999988763 3456666777888999999999999999988
Q ss_pred hCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991 580 IDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (781)
Q Consensus 580 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (781)
++.+. .+..||..+.+ .+++.+|.-+|+..-+..|..+.....++.|.+.+|+|++|...++.++..++++++.
T Consensus 166 ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 IDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred cchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 76643 34444444433 4578999999999999888889999999999999999999999999999999999997
Q ss_pred HHHHHHH
Q 003991 656 FVLQCLA 662 (781)
Q Consensus 656 ~~~~~~~ 662 (781)
+.++...
T Consensus 244 L~Nliv~ 250 (299)
T KOG3081|consen 244 LANLIVL 250 (299)
T ss_pred HHHHHHH
Confidence 7666444
No 180
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.74 E-value=3.2e-05 Score=76.43 Aligned_cols=262 Identities=18% Similarity=0.091 Sum_probs=203.3
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (781)
..+-..+.-+...+-.|+++.|.+-|+.++. +|+. .-.+..+-.-....|..+.|..+.+++....|.-+.++...-.
T Consensus 118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 118 QEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred chHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 3466777788889999999999999998874 4432 1122233333456899999999999999999999999888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC---CCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003991 458 ARAALGESVEAIQDLSKALEFE---PNSA-----DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (781)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~---p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 529 (781)
..+..|+++.|+++.+...... ++.. ..+...+... -..+...|...-.++.++.|+...+-..-+..++.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 8999999999999998765432 2211 1122222222 23468889999999999999999888899999999
Q ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHH---HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ---QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (781)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~---~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 606 (781)
.|+..++-.+++.+.+..|.- .++ +..++.+.|+. ++.-++ +...+.|++.+.....+..-+.-|++..|..
T Consensus 276 d~~~rKg~~ilE~aWK~ePHP-~ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 276 DGNLRKGSKILETAWKAEPHP-DIA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred ccchhhhhhHHHHHHhcCCCh-HHH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 999999999999999988863 222 22233345554 444444 4456789999999999999999999999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhh
Q 003991 607 DLSSGLGIDPSNIECLYLRASCYHAI-GEYREAIKDYDAALDL 648 (781)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 648 (781)
--+.+....|. ..++..++.+-... |+-.+...++-++++-
T Consensus 351 ~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 351 KAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99999999998 67888889888766 9999999999999974
No 181
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.73 E-value=4.4e-06 Score=78.99 Aligned_cols=191 Identities=15% Similarity=0.142 Sum_probs=130.9
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---H
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---E 450 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 450 (781)
....+..++..|...++.|++++|+..|+.+...+|.. ..+.+.++.++++.++++.|+...++-+.+.|.++ .
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 34468899999999999999999999999999988765 46889999999999999999999999999998775 4
Q ss_pred HHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003991 451 AWKRRGQARAALG--------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (781)
Q Consensus 451 ~~~~la~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 522 (781)
+++..|.++...- -..+|+..|+..+...|++.-+-.....+ ..++..+ ..--..
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~ 172 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMA 172 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHH
Confidence 6777777765431 24567778888888888763221111110 0000000 111134
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003991 523 LGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (781)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 584 (781)
+|..|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 5667777777777777777777765544 4566666677777777777665543333333443
No 182
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.70 E-value=3.3e-07 Score=90.32 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=81.5
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---CHHHHH
Q 003991 551 LEAWGHLTQFY-QDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLY 623 (781)
Q Consensus 551 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 623 (781)
...++..+..+ ...|++++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|++++...|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45555566554 45678888888888888888876 468888888888888888888888888877776 367888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 624 LRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
.+|.++..+|++++|...|+++++..|++..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 8888888888888888888888888888764
No 183
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.70 E-value=9e-09 Score=99.47 Aligned_cols=109 Identities=21% Similarity=0.286 Sum_probs=98.4
Q ss_pred cccc-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCc
Q 003991 25 ELVR-VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (781)
Q Consensus 25 ~~~~-~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~ 102 (781)
+.++ .++++..+.+.|....+++..|++++||+.|+++|+++ +....|..||.++++++....|+.+|..|++++|+.
T Consensus 102 s~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 102 SNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS 181 (377)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence 3344 34456677788899999999999999999999999999 666779999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 003991 103 LQAYILKGCAFSALGRKEEALSVWEKGYEHA 133 (781)
Q Consensus 103 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 133 (781)
.+.|-.+|.+...+|++++|.++|..+..+.
T Consensus 182 a~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 182 AKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 9999999999999999999999999997654
No 184
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=5.5e-07 Score=93.26 Aligned_cols=115 Identities=22% Similarity=0.290 Sum_probs=72.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (781)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 606 (781)
+...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.+++...|.+...+...+..+...++++.|+.
T Consensus 179 l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 33445556666666665555543 344456666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (781)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (781)
+.++++...|++...|+.|+.+|..+|+++.|+..++.
T Consensus 256 iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 66666666666666666666666666666666655543
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.66 E-value=8.7e-06 Score=71.91 Aligned_cols=150 Identities=17% Similarity=0.123 Sum_probs=123.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-LDRNFLEAWGHLTQFYQDLANSEKALECL 574 (781)
Q Consensus 496 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 574 (781)
.=+.+....-..+.+...|... -.+.+|..+...|++.+|...|++++. +.-.++..+..+++..+..+++..|...+
T Consensus 69 ~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 69 KLDPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred hcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3345555555556666666543 356789999999999999999999875 45677888999999999999999999999
Q ss_pred HHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 575 QQVLYIDKR--FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 575 ~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
++..+.+|. .+.....+|..+...|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+....+
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999988873 4777888999999999999999999999999988 78888999999999998888877666554
No 186
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=1.5e-05 Score=85.54 Aligned_cols=253 Identities=17% Similarity=0.117 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (781)
.-...|......|-.++|..+|.+.-.. -.+-..|...|.+++|.+..+.--.+ .-...|++.+..+...
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEAR 871 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhh
Confidence 3344566777888888888888886442 24455666777777776655432111 1134567777777777
Q ss_pred CCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------
Q 003991 463 GESVEAIQDLSKA----------LEFEP----------NSADILHERGIVNFKFKDFNAAVEDLSACVKL---------- 512 (781)
Q Consensus 463 g~~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---------- 512 (781)
++.+.|+++|+++ +.-+| .++..|...|..+...|+.+.|+.+|..+-..
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQ 951 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeec
Confidence 7777887777764 22233 23456666777777778888888777765432
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------Cccc--------------HHHHHHHHHHH
Q 003991 513 -----------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRNF--------------LEAWGHLTQFY 561 (781)
Q Consensus 513 -----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~--------------~~~~~~la~~~ 561 (781)
...+..+.+.+|+.|...|++.+|+.+|.+|-.. ..++ +.-....|..|
T Consensus 952 Gk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYy 1031 (1416)
T KOG3617|consen 952 GKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYY 1031 (1416)
T ss_pred cCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHH
Confidence 2345567788999999999999999888876433 2111 01112233344
Q ss_pred HHcC-CHHHHHHHHHHH------H-----------------hhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHh-----
Q 003991 562 QDLA-NSEKALECLQQV------L-----------------YIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSG----- 611 (781)
Q Consensus 562 ~~~g-~~~~A~~~~~~a------l-----------------~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a----- 611 (781)
...| ....|...|.++ + .++| .++.....-+..+....+|++|...+-.+
T Consensus 1032 Ee~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1032 EELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG 1111 (1416)
T ss_pred HHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444 555555555443 1 1233 45777788888888999999988765443
Q ss_pred -hcc----------------CCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991 612 -LGI----------------DPS---------NIECLYLRASCYHAIGEYREAIKDYDAA 645 (781)
Q Consensus 612 -l~~----------------~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (781)
+.+ .|. ...++..+|.++.++|.|..|.+-|.+|
T Consensus 1112 AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1112 ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 332 111 1357889999999999999998888765
No 187
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.63 E-value=9.7e-07 Score=91.47 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=63.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003991 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503 (781)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 503 (781)
.+...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 333445555555555555554443 33345555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (781)
Q Consensus 504 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (781)
...++++...|.+...|..|+.+|...|++++|+..++.
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 555555555555555555555555555555555554443
No 188
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.58 E-value=2e-05 Score=74.70 Aligned_cols=188 Identities=19% Similarity=0.082 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYTY 522 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~ 522 (781)
+..++.-|...+..|++++|...|+.+....|.. ..+...++..+++.+++++|+...++-+.+.|.++ .+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 4566777777777777777777777777766654 44666677777777777777777777777766654 34455
Q ss_pred HHHHHHHcC--------CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003991 523 LGLALSSIG--------EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (781)
Q Consensus 523 la~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 594 (781)
.|.+++..= -..+|+..|...+...|++..+-..... +..+...+ ..--...|..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~L------A~~Em~Iary 176 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDAL------AGHEMAIARY 176 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHHH------HHHHHHHHHH
Confidence 555544321 1234555555555555554221110000 00000000 1122456888
Q ss_pred HHHCCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 595 LHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|.+.-.-.-...|+++
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999887764 46788889999999999999876655555556653
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.57 E-value=1.3e-06 Score=74.18 Aligned_cols=56 Identities=21% Similarity=0.145 Sum_probs=21.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccCCC---CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003991 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLRASCYHAIGEYREAIKDYD 643 (781)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~ 643 (781)
++.+|..+..+|++++|+..+++++...|+ +..+...++.++...|++++|+..+-
T Consensus 41 ~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 41 LIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333344444444444444444444333333 33333333334444444444444333
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.57 E-value=2.4e-07 Score=72.30 Aligned_cols=65 Identities=26% Similarity=0.309 Sum_probs=56.5
Q ss_pred HHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHH
Q 003991 76 AFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADL 140 (781)
Q Consensus 76 A~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 140 (781)
+.+|++.++|++|++.+++++.++|+++.+++.+|.++..+|++++|+..|++++++.|+.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 45788889999999999999999999999999999999999999999999999988888776553
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.56 E-value=2.6e-06 Score=72.42 Aligned_cols=96 Identities=23% Similarity=0.157 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 003991 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR---FSKAYHLR 591 (781)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l 591 (781)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 568899999999999999999999999975443 678999999999999999999999999999888 77788889
Q ss_pred HHHHHHCCCHHHHHHHHHHhhc
Q 003991 592 GLLLHGLGQHKKAIKDLSSGLG 613 (781)
Q Consensus 592 a~~~~~~g~~~~A~~~~~~al~ 613 (781)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.55 E-value=2.8e-07 Score=70.81 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=48.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (781)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (781)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+.+++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777777666655554
No 193
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=1.6e-05 Score=80.54 Aligned_cols=309 Identities=15% Similarity=0.064 Sum_probs=190.4
Q ss_pred HHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 003991 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQI-LKEDPM--------YPEALIGRGTARAFQRELEAAISDFTE 440 (781)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (781)
++.+.....+++.+++.++..++..|+|..|.+.+... +...|. .-..|.++|.++++.|.|..+..+|.+
T Consensus 229 vK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~k 308 (696)
T KOG2471|consen 229 VKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLK 308 (696)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHH
Confidence 34445556688999999999999999999999887654 222232 123467899999999999999999999
Q ss_pred HHHh---------CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---H
Q 003991 441 AIQS---------NP---------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD---F 499 (781)
Q Consensus 441 al~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~ 499 (781)
+++. .| ...+++++.|..|...|++-.|.++|.++......+|..|..++.+.+...+ .
T Consensus 309 AL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ 388 (696)
T KOG2471|consen 309 ALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLL 388 (696)
T ss_pred HHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhh
Confidence 9961 11 2356889999999999999999999999999999999999999998765321 1
Q ss_pred HHHHHHHHH--------------HHHh-------CCC---CHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhh----
Q 003991 500 NAAVEDLSA--------------CVKL-------DKE---NKSAYTYLGLALSSIG-----EYKKAEEAHLKAIQL---- 546 (781)
Q Consensus 500 ~~A~~~~~~--------------a~~~-------~p~---~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~---- 546 (781)
++......+ .+-+ .+. -+..-..++.++.+.+ .-..--..+.-+...
T Consensus 389 ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g 468 (696)
T KOG2471|consen 389 EEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEG 468 (696)
T ss_pred hhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccC
Confidence 111111100 0000 000 0111111222222111 000000000000000
Q ss_pred ------------------------Cc-cc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003991 547 ------------------------DR-NF-----------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (781)
Q Consensus 547 ------------------------~~-~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 590 (781)
.| .. ..++...+.+-...|+.-.|+..-++.+.. |+...++..
T Consensus 469 ~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kf 547 (696)
T KOG2471|consen 469 SSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKF 547 (696)
T ss_pred CCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHH
Confidence 01 11 124456677777889999999988888765 455666666
Q ss_pred HHHHH-----HHCCCHHHHHHHHHHhh------c-----------------cCCC----------C-----HHHHHHHHH
Q 003991 591 RGLLL-----HGLGQHKKAIKDLSSGL------G-----------------IDPS----------N-----IECLYLRAS 627 (781)
Q Consensus 591 la~~~-----~~~g~~~~A~~~~~~al------~-----------------~~p~----------~-----~~~~~~la~ 627 (781)
+|.+| .-+.+..+|...+.--+ . ++|. . ...++++|.
T Consensus 548 LGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~ 627 (696)
T KOG2471|consen 548 LGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAA 627 (696)
T ss_pred HHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHH
Confidence 65554 45667777766554311 0 0111 1 246789999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhh
Q 003991 628 CYHAIGEYREAIKDYDAALDLEL--DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID 686 (781)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 686 (781)
.+.-+|++++|..++..|..+-| .++++.... +|.. ..+|+...|...+++.
T Consensus 628 a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~la--vyid-----L~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 628 ALALQGHHDQAKSLLTHAATLLHSLVNVQATVLA--VYID-----LMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHhcccHHHHHHHHHHHHhhhccccHHHHHHH--HHHH-----HhcCCCcchHHHHHhc
Confidence 99999999999999999998877 344433322 2222 2455555565555443
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=0.00021 Score=66.98 Aligned_cols=226 Identities=14% Similarity=0.080 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQSN-------------PSA------GEAWKRRGQARAALGESVEAIQDLSKA 475 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (781)
...|...-.++.+...+++|..-+...-..+ |+. .......|.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3455555556666666666665554443332 111 112333455556667766666555544
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHH
Q 003991 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAW 554 (781)
Q Consensus 476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 554 (781)
... ...+..........+..++.+++-+ ..+.+.+..++...|.|.-.+..+.+.++.+ |..+...
T Consensus 149 ~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~ 215 (366)
T KOG2796|consen 149 KTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL 215 (366)
T ss_pred HHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence 321 1112222222333355566665543 3466778888899999999999999999988 5678888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 003991 555 GHLTQFYQDLANSEKALECLQQVLYID------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (781)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 628 (781)
..+|.+-++.|+.+.|..+|+++-+.. .....+..+.+.++.-.+++..|...|.+++..+|.++.+..+.|.|
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 899999999999999999999665332 23455677888899999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 629 YHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
+.-+|+..+|++..+.+++..|...
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999753
No 195
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=1.5e-05 Score=80.86 Aligned_cols=264 Identities=18% Similarity=0.161 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKE---------DP---------MYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (781)
++..+|.++++.|.|.-+..+|.++++. .| ...+++++.|..|...|+.-.|.++|.++...
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 4578999999999999999999999961 11 24578999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHH--------------HHHh-------CCCC---HHHHHHHHHHHHhcC
Q 003991 445 NPSAGEAWKRRGQARAALGE---SVEAIQDLSK--------------ALEF-------EPNS---ADILHERGIVNFKFK 497 (781)
Q Consensus 445 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~--------------al~~-------~p~~---~~~~~~la~~~~~~~ 497 (781)
...++..|.+++.+++...+ .++......+ .+-+ .|.. +..-..++.+..+.+
T Consensus 365 fh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrna 444 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNA 444 (696)
T ss_pred HhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhh
Confidence 99999999999999875421 1111111111 0000 0000 111112222221111
Q ss_pred -----CHHHHHHHHHHHHHh----------------------------CC-CCH-----------HHHHHHHHHHHHcCC
Q 003991 498 -----DFNAAVEDLSACVKL----------------------------DK-ENK-----------SAYTYLGLALSSIGE 532 (781)
Q Consensus 498 -----~~~~A~~~~~~a~~~----------------------------~p-~~~-----------~~~~~la~~~~~~g~ 532 (781)
.-..--..+.-+... .| ..+ .++...+.+-..+|+
T Consensus 445 l~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd 524 (696)
T KOG2471|consen 445 LYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGD 524 (696)
T ss_pred hhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 000000000000000 01 111 234556777888999
Q ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHH-----HHcCCHHHHHHHHHHHH------h-----------------hCC--
Q 003991 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFY-----QDLANSEKALECLQQVL------Y-----------------IDK-- 582 (781)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al------~-----------------~~~-- 582 (781)
.-.|+..-.+.++. |+...++..+|.+| +.+.+..+|...+.--+ . ++|
T Consensus 525 ~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~ 603 (696)
T KOG2471|consen 525 PIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPST 603 (696)
T ss_pred hhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcC
Confidence 99999999998875 45566666666655 45677777776654411 0 011
Q ss_pred ----C----C-----HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 583 ----R----F-----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 583 ----~----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
+ . ...++++|.++.-+|++++|..++..+..+-+ .++.+....-.+-.++|+...|...+++.--
T Consensus 604 ~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 604 GRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred CCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 0 0 12478899999999999999999999988877 4566776666777889999999998887643
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.53 E-value=4.4e-07 Score=70.83 Aligned_cols=67 Identities=28% Similarity=0.459 Sum_probs=55.0
Q ss_pred HHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHH
Q 003991 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658 (781)
Q Consensus 592 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 658 (781)
..++...+++++|+.++++++..+|+++..+..+|.++..+|++.+|+..|+++++..|+++.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4567788888888888888888888888888888888888888888888888888888888775443
No 197
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.53 E-value=7.3e-05 Score=81.84 Aligned_cols=226 Identities=16% Similarity=0.106 Sum_probs=177.1
Q ss_pred HHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003991 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505 (781)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 505 (781)
...+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..++++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 45689999999999999999999999999999999999999999999888888888888999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH-HHHHHHHHHHcCCH---------HHHHHHHH
Q 003991 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA-WGHLTQFYQDLANS---------EKALECLQ 575 (781)
Q Consensus 506 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~la~~~~~~g~~---------~~A~~~~~ 575 (781)
|++++..+|+ .+....+-.+|.+.+.|.+-.+.--+..+..|+.+.. |.-+..+....... .-|...++
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 9999999999 8888888889999998887776666666778877544 44444443333222 33555666
Q ss_pred HHHhhC-CCCHH-HHHHHHHHHHHCCCHHHHHHHHHHh--hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 576 QVLYID-KRFSK-AYHLRGLLLHGLGQHKKAIKDLSSG--LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 576 ~al~~~-~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a--l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
+.++.. +-... -....-.++..+|++++|...+..- -...+.+...-......+...+++.+-.+...+++...+|
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 666655 32211 1223345677889999999998433 2334445555556777888999999999999999999999
Q ss_pred c
Q 003991 652 S 652 (781)
Q Consensus 652 ~ 652 (781)
+
T Consensus 259 d 259 (932)
T KOG2053|consen 259 D 259 (932)
T ss_pred c
Confidence 8
No 198
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=3.7e-05 Score=82.70 Aligned_cols=226 Identities=15% Similarity=0.080 Sum_probs=144.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH--------HHHH---hCCCcHHHHHHHHHHH
Q 003991 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT--------EAIQ---SNPSAGEAWKRRGQAR 459 (781)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~---~~p~~~~~~~~la~~~ 459 (781)
|...|+.+.|.+..+-+ ....+|-++|....+..+.+-|.-++- +++. .+|+. .-...+.+.
T Consensus 738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e--~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE--DEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--hhhHHHHHH
Confidence 44578888887766543 234678888888877777776655542 1222 13332 223456667
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003991 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 539 (781)
..+|..++|...|++.-.. -.+-.+|...|.|++|.+..+.-=++ .-...|++.|.-+...++.+.|+++
T Consensus 811 ieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHH
Confidence 7888888888888887543 34555677788888887766542211 1235677788888888888888888
Q ss_pred HHHHH----------hhCcc----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 003991 540 HLKAI----------QLDRN----------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (781)
Q Consensus 540 ~~~al----------~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 599 (781)
|+++- .-+|. ++..|...|..+...|+.+.|+.+|..+- -|+.+..+..-+|
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQG 952 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeecc
Confidence 87652 22222 24456666777777777777777777653 2455555556666
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003991 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (781)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 646 (781)
+.++|-.+.++ ..+-.+-+.+|+.|...|++.+|+.+|.+|-
T Consensus 953 k~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 953 KTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred CchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66666554432 3445667777777777777777777776653
No 199
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.50 E-value=5e-06 Score=71.66 Aligned_cols=87 Identities=21% Similarity=0.222 Sum_probs=75.5
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HH
Q 003991 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EA 451 (781)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 451 (781)
...+..++..|...+..|+|.+|++.|+.+....|.. ..+.+.+|.+|+..+++++|+..+++-++++|.++ .+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3457889999999999999999999999999888764 57889999999999999999999999999999875 47
Q ss_pred HHHHHHHHHHcCC
Q 003991 452 WKRRGQARAALGE 464 (781)
Q Consensus 452 ~~~la~~~~~~g~ 464 (781)
++..|.++..+..
T Consensus 87 ~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 87 YYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888877655
No 200
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.7e-06 Score=77.13 Aligned_cols=97 Identities=26% Similarity=0.293 Sum_probs=53.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991 558 TQFYQDLANSEKALECLQQVLYIDKRF-----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (781)
Q Consensus 558 a~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (781)
|+-++..|+|++|..-|..++...|.. ...|.+.|.++++++.++.|+..+.++++++|....++...|.+|.++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 444444555555555555555554433 123445555555566666666666666666665555555556666666
Q ss_pred CCHHHHHHHHHHHHhhccCcHH
Q 003991 633 GEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 633 g~~~~A~~~~~~al~~~p~~~~ 654 (781)
..+++|+..|++.++.+|...+
T Consensus 182 ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHH
Confidence 6666666666666666655544
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.50 E-value=5.1e-07 Score=69.30 Aligned_cols=61 Identities=31% Similarity=0.369 Sum_probs=31.7
Q ss_pred HCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (781)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (781)
..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++..+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 4455555555555555555555555555555555555555555555555555555444433
No 202
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.49 E-value=4.6e-06 Score=79.75 Aligned_cols=105 Identities=22% Similarity=0.286 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 003991 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQ 457 (781)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 457 (781)
.|..|..++..|+|..|...|...++..|+. +.++|.||.+++.+|+++.|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 8888999999999999999999999999885 5799999999999999999999999999987765 688999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003991 458 ARAALGESVEAIQDLSKALEFEPNSADILHE 488 (781)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 488 (781)
+...+|+.++|...|+++++..|....+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999988665543
No 203
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.47 E-value=2.8e-06 Score=81.17 Aligned_cols=101 Identities=13% Similarity=0.027 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---HHHHHHHHH
Q 003991 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRAS 627 (781)
Q Consensus 554 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 627 (781)
.+..|.-++..|+|..|...|..-++..|+. +.+++.||.+++.+|+|+.|...|..+++..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4555555666667777777777777666654 5567777777777777777777777777766553 567777777
Q ss_pred HHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 628 CYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
+...+|+.++|...|+++++..|+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 777777777777777777777777655
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.42 E-value=3.9e-05 Score=67.94 Aligned_cols=147 Identities=10% Similarity=0.089 Sum_probs=103.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAHL 541 (781)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (781)
=+.+....-..+.+...|. ..-.+.+|..+...|++.+|...|++++. +..+++..+..++...+..+++..|...++
T Consensus 70 ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 70 LDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred cChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3445555555555555553 34566777777788888888888877765 355667777778888888888888888888
Q ss_pred HHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 003991 542 KAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (781)
Q Consensus 542 ~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (781)
+..+.+|.. +.....+|..+...|.+.+|...|+.++...|+ +.+....+..+.++|+..+|..-+...
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 877777643 666777778888888888888888888877775 666677777777888777666555443
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00039 Score=65.26 Aligned_cols=238 Identities=16% Similarity=0.120 Sum_probs=175.4
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------CC------HHHHHHHHHHHHHccCHHHHHHHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-------------MY------PEALIGRGTARAFQRELEAAISDFT 439 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-------------~~------~~~~~~la~~~~~~g~~~~A~~~~~ 439 (781)
.....|-.+-.++.+...+++|...+...-+.+. +. ......-|.+....|+..+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 3456666777778888888888877766544331 11 1223445666777787777766555
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH
Q 003991 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKS 518 (781)
Q Consensus 440 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-p~~~~ 518 (781)
..... -..+..........+..+..+++-+. .+.+.+..++...|.|.-.+..+.+.++.+ |..+.
T Consensus 147 ~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~ 213 (366)
T KOG2796|consen 147 KLKTV-------VSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ 213 (366)
T ss_pred HHHHH-------HHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHH
Confidence 54331 11122223333334666666666543 577888899999999999999999999988 56788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 003991 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (781)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 592 (781)
....+|.+.++.|+.+.|..+|+..-+.. .....+..+.+.++.-.+++.+|...+.+++..+|.++.+-++.|
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKA 293 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKA 293 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHH
Confidence 88899999999999999999998654332 223556677888899999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHhhccCCCCH---HHHHHHHHHH
Q 003991 593 LLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCY 629 (781)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~ 629 (781)
.|+...|+..+|++.++.++...|... ...+++..+|
T Consensus 294 LcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 999999999999999999999999742 3444554444
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.37 E-value=1.2e-06 Score=89.99 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=60.9
Q ss_pred cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA---YILKGCAFSALGRKEEALSVWEKGYEH 132 (781)
Q Consensus 67 ~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a---~~~lg~~~~~~g~~~~A~~~~~~al~~ 132 (781)
+++..++|+|.+|+++|+|++|+..|++||+++|++..+ |+++|.+|..+|++++|+.+|++|+++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345559999999999999999999999999999999965 999999999999999999999999654
No 207
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.0012 Score=67.56 Aligned_cols=329 Identities=16% Similarity=0.079 Sum_probs=199.4
Q ss_pred HHhhHHHHHHHhhccCCc---cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcc-
Q 003991 362 AKRNKKFCVTRISKSKSI---SVDFRLSRGIAQV-NEGKYASAISIFDQILKED---PMY----PEALIGRGTARAFQR- 429 (781)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~---p~~----~~~~~~la~~~~~~g- 429 (781)
..+..-.|+..+....+. .+...+.+|..++ ...+++.|...++++..+. |+. ..+...++.+|....
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~ 103 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ 103 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence 344445566665554443 3456677776654 4789999999999988754 332 346677888888877
Q ss_pred CHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH--HHHHHhcCCH
Q 003991 430 ELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHER--GIVNFKFKDF 499 (781)
Q Consensus 430 ~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l--a~~~~~~~~~ 499 (781)
.+..|...+.+++++....+ ...+.++.++.-..++..|++.+.-..+....- ..+.+.+ +.++....+.
T Consensus 104 s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~ 183 (629)
T KOG2300|consen 104 SFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDD 183 (629)
T ss_pred CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccH
Confidence 78889999999999876654 356778888888999999998854333222111 1122222 2333333332
Q ss_pred HHHHHHHH---HHHHhCCCCHH-------HHHHHHH--------------------------------------------
Q 003991 500 NAAVEDLS---ACVKLDKENKS-------AYTYLGL-------------------------------------------- 525 (781)
Q Consensus 500 ~~A~~~~~---~a~~~~p~~~~-------~~~~la~-------------------------------------------- 525 (781)
.+-..... +..+....++. .+..+-.
T Consensus 184 ~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~ 263 (629)
T KOG2300|consen 184 YDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPI 263 (629)
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChH
Confidence 22222222 22221111110 0111111
Q ss_pred -------------HH-------HHcCCHHHHHHHHHHHHhhCcc------cH--------HHHHHHHHHHHHcCCHHHHH
Q 003991 526 -------------AL-------SSIGEYKKAEEAHLKAIQLDRN------FL--------EAWGHLTQFYQDLANSEKAL 571 (781)
Q Consensus 526 -------------~~-------~~~g~~~~A~~~~~~al~~~~~------~~--------~~~~~la~~~~~~g~~~~A~ 571 (781)
+| ...|-+++|.++-++++..... .. ..+-.++.+-.-.|++.+|+
T Consensus 264 l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al 343 (629)
T KOG2300|consen 264 LFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEAL 343 (629)
T ss_pred HHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 11 1234456666666555543211 11 12234455555678888887
Q ss_pred HHHHHHHhh---CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-C--HHHHHHHHHHHHHhCCHHHH
Q 003991 572 ECLQQVLYI---DKR-------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-N--IECLYLRASCYHAIGEYREA 638 (781)
Q Consensus 572 ~~~~~al~~---~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A 638 (781)
+....+.+. .|. .+..+..+|......+.++.|...|..|.+.... + ..+-.++|.+|...|+-+.-
T Consensus 344 ~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~ 423 (629)
T KOG2300|consen 344 EEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDL 423 (629)
T ss_pred HHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHH
Confidence 777666543 232 2445667788788888889999888888876443 2 23456788999988876655
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCC
Q 003991 639 IKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID 690 (781)
Q Consensus 639 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 690 (781)
.+.++..--.+..........+-++|-.|...+..+++++|...+....+..
T Consensus 424 y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 424 YKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 5544443333333445567778889999999999999999999998887765
No 208
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.0001 Score=67.92 Aligned_cols=162 Identities=15% Similarity=0.045 Sum_probs=114.2
Q ss_pred HHcCCHHHHHHHHHHHHhhCcccHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHH
Q 003991 528 SSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDL-ANSEKALECLQQVLYIDKRF------SKAYHLRGLL 594 (781)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~------~~~~~~la~~ 594 (781)
++.++..+|+.++++++++..+... .+..+|.+|... .++++|+.+|+++-+..... ...+...+..
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 3455888888888888887655432 344788888765 88999999999987654432 2345566777
Q ss_pred HHHCCCHHHHHHHHHHhhccCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 003991 595 LHGLGQHKKAIKDLSSGLGIDPSNI-------ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKE 667 (781)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 667 (781)
-...++|.+|+..|++.....-+++ ..++.-|.|++...+.-.+...+++..+++|...+..-..-+.-...+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~a 243 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDA 243 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHH
Confidence 7888999999999999887655553 345667888888889999999999999999988776544444444444
Q ss_pred HHHHHHhchhhHHHHHhhhcCC
Q 003991 668 IALYTASKINSEFCWFDIDGDI 689 (781)
Q Consensus 668 ~~~~~~~~~~~A~~~~~~~~~~ 689 (781)
+.......|.+.+.-|+....+
T Consensus 244 ieE~d~e~fte~vkefDsisrL 265 (288)
T KOG1586|consen 244 IEEQDIEKFTEVVKEFDSISRL 265 (288)
T ss_pred HhhhhHHHHHHHHHhhhccchH
Confidence 4444555566666666544443
No 209
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=5.9e-05 Score=69.44 Aligned_cols=187 Identities=16% Similarity=0.182 Sum_probs=126.9
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cc-cHHHHHHHHHHHHHcCCHH
Q 003991 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RN-FLEAWGHLTQFYQDLANSE 568 (781)
Q Consensus 495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~-~~~~~~~la~~~~~~g~~~ 568 (781)
..+.+++|.++|.++- ..|....++..|=..|.++-... .. ....|...+.+|. .++..
T Consensus 26 g~~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~ 90 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPE 90 (288)
T ss_pred CCcchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChH
Confidence 3446777777776653 33333344444444444443321 11 1334444455554 55899
Q ss_pred HHHHHHHHHHhhCCCCHH------HHHHHHHHHHHC-CCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCH
Q 003991 569 KALECLQQVLYIDKRFSK------AYHLRGLLLHGL-GQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEY 635 (781)
Q Consensus 569 ~A~~~~~~al~~~~~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 635 (781)
+|+.++++++++..+... .+..+|.+|..- .++++|+.+|+++-+..... ...+...|..-..+++|
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999988765433 345788888765 89999999999997764432 25677788888899999
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991 636 REAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (781)
Q Consensus 636 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 696 (781)
.+|+..|++.....-+++-.-+..--.++..|.++.-..+.-.+...+++-.+++|.|.+-
T Consensus 171 ~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 9999999999988777766555555556667777776666666666777778889988765
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.34 E-value=1.6e-05 Score=68.64 Aligned_cols=104 Identities=17% Similarity=0.099 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH---HHHHH
Q 003991 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYL 624 (781)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 624 (781)
+..++.-|.-.+..|+|++|++.|+.+....|.. ..+...++.+|.+.+++++|+..+++.++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3445555555555666666666666655555532 34555566666666666666666666666655543 45555
Q ss_pred HHHHHHHhCC---------------HHHHHHHHHHHHhhccCcHH
Q 003991 625 RASCYHAIGE---------------YREAIKDYDAALDLELDSME 654 (781)
Q Consensus 625 la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~ 654 (781)
.|.++..+.. ...|...|++.++..|++.-
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 6655555544 77899999999999998753
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.27 E-value=3.7e-06 Score=86.37 Aligned_cols=70 Identities=19% Similarity=0.037 Sum_probs=57.9
Q ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA---YHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (781)
Q Consensus 546 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (781)
.+|+++.+++++|.+|+..|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 367778888888888888888888888888888888888754 8888888888888888888888888863
No 212
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.26 E-value=6.4e-06 Score=73.21 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHH
Q 003991 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG----------EYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL 670 (781)
Q Consensus 601 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 670 (781)
|+.|.+.++.....+|.+++.+++.|.++..+. -+++|+.-|++|+.++|+..++++.++.++...|...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 566777777777777777777777777666553 3567888888889999999999888888888887754
Q ss_pred HHH----hchhhHHHHHhhhcCCCcccHHHH
Q 003991 671 YTA----SKINSEFCWFDIDGDIDPLFKEYW 697 (781)
Q Consensus 671 ~~~----~~~~~A~~~~~~~~~~~p~~~~~~ 697 (781)
-.. ..|++|..+|+++.+.+|++..|+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 333 568899999999999999999886
No 213
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.22 E-value=6.9e-05 Score=62.15 Aligned_cols=98 Identities=24% Similarity=0.301 Sum_probs=88.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHH
Q 003991 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQAR 459 (781)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 459 (781)
+-..|..+...|+.+.|++.|.+++..-|..+.+|.+.+..+.-+|+.++|+..+++++++.... -.++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44568888999999999999999999999999999999999999999999999999999986554 34788899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 003991 460 AALGESVEAIQDLSKALEFEPN 481 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~ 481 (781)
...|+-+.|..-|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999998887653
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.21 E-value=3e-06 Score=67.04 Aligned_cols=62 Identities=26% Similarity=0.345 Sum_probs=53.9
Q ss_pred hhhhhHHHHHHhhhCHHHHHHHHHHHHhcC-------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 70 QDICNRAFCYSQLELHKHVIRDCDKALQLD-------PTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (781)
Q Consensus 70 ~~~~~rA~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 131 (781)
..+.++|.+|..+|+|++|+..+++++++. |..+..+..+|.++..+|++++|+..|+++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 458899999999999999999999999763 33466999999999999999999999999954
No 215
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.18 E-value=0.0067 Score=63.20 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=58.1
Q ss_pred HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003991 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443 (781)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (781)
.-++.+|.+.++|+.+...+..+ .+++....|++.+...|..+.+|.......+...+|+.....|.+++.
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34667888888888888777666 888888888888888888888888888888888888888888888764
No 216
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.10 E-value=3.3e-06 Score=53.66 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=30.9
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 003991 92 CDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (781)
Q Consensus 92 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 123 (781)
|++||+++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999999999999999999999997
No 217
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.07 E-value=3.2e-05 Score=68.84 Aligned_cols=54 Identities=19% Similarity=0.374 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHhhccCcHH
Q 003991 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE-----------YREAIKDYDAALDLELDSME 654 (781)
Q Consensus 601 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~ 654 (781)
+++|+.-|++++.++|+...+++.+|.+|..++. |++|..+|++|...+|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 4556666666777777777777777777665543 78899999999999999854
No 218
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00032 Score=68.13 Aligned_cols=156 Identities=13% Similarity=0.036 Sum_probs=79.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHCCCH
Q 003991 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRF---SKAYHLRGLLLHGLGQH 601 (781)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~g~~ 601 (781)
+....|++.+|...+.+.++..|.+.-++..--.+++..|+...-...+++++.. +++. ..+.-.++..+...|-|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3444555555555555555555555555555555555555555555555555543 3332 22333444455555555
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q 003991 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFC 681 (781)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 681 (781)
++|.+..+++++++|.+..+...++.++...|++.++.++..+--..- ...|+..+--|..-+..+..-+.++.|+.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W---r~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW---RQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccch---hhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 555555555555555555555555555555555555555544432211 12233334444444555545555555555
Q ss_pred HHh
Q 003991 682 WFD 684 (781)
Q Consensus 682 ~~~ 684 (781)
.|+
T Consensus 269 IyD 271 (491)
T KOG2610|consen 269 IYD 271 (491)
T ss_pred HHH
Confidence 553
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=1.5e-05 Score=81.62 Aligned_cols=115 Identities=21% Similarity=0.056 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhh---hCHHHHHHHHHHHHhcCCCchh
Q 003991 29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQL---ELHKHVIRDCDKALQLDPTLLQ 104 (781)
Q Consensus 29 ~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~---~~~~~A~~~~~~al~~~p~~~~ 104 (781)
..++.+..+..+..+++.|-.+.+..||..|++++... ....+|.|||.++++. |+--.|+.+|..|+.++|...+
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k 446 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK 446 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH
Confidence 45667777888899999999999999999999999998 5566689999999986 5888899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHH
Q 003991 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQF 143 (781)
Q Consensus 105 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 143 (781)
||++++.++..++++.+|+.+...+....|..-......
T Consensus 447 ah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v 485 (758)
T KOG1310|consen 447 AHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFV 485 (758)
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhh
Confidence 999999999999999999987665544455444444433
No 220
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00054 Score=66.62 Aligned_cols=160 Identities=14% Similarity=0.058 Sum_probs=112.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHH
Q 003991 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS---ADILHERGIVNF 494 (781)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~ 494 (781)
...+.+....|++.+|....++.++..|.+.-++..--..+...|+...-...+++++.. +++. ..+.-.++..+.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 334555666778888888888888888887777777777777788888777788877766 5544 344455666677
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHH
Q 003991 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKA 570 (781)
Q Consensus 495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A 570 (781)
..|-|++|.+..++++++++.+.-+...++.++...|++.++.++..+.-..-... ..-|-..+.+++..+.|+.|
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 77888888888888888888887777788888888888888887776643322111 12334556677777888888
Q ss_pred HHHHHHHH
Q 003991 571 LECLQQVL 578 (781)
Q Consensus 571 ~~~~~~al 578 (781)
+.+|.+-+
T Consensus 267 leIyD~ei 274 (491)
T KOG2610|consen 267 LEIYDREI 274 (491)
T ss_pred HHHHHHHH
Confidence 88887654
No 221
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0038 Score=58.31 Aligned_cols=199 Identities=16% Similarity=0.076 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP------EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 454 (781)
+..+..-+..+....+|++|..++.++.+-..++. .++-..|........+.++..+++++...
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l---------- 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL---------- 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------
Confidence 44555566677777888888888888876544332 23334445555556666666666666543
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 003991 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALS 528 (781)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~ 528 (781)
|...|..+.|-..++++-+ .....++++|+.+|++++.+...+ .+.+...++++.
T Consensus 101 ----Y~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 101 ----YVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred ----HHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 3333333333333333222 123334445555555544432221 123334455555
Q ss_pred HcCCHHHHHHHHHHHHhh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHC
Q 003991 529 SIGEYKKAEEAHLKAIQL------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID----KRFSKAYHLRGLLLHGL 598 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~ 598 (781)
+...+++|-..+.+-... .++....+.....+|....+|..|..+++...++. |++..+..+|-..| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 555555555554443221 12223334444444555556666666666544331 23333444433332 34
Q ss_pred CCHHHHHHHHH
Q 003991 599 GQHKKAIKDLS 609 (781)
Q Consensus 599 g~~~~A~~~~~ 609 (781)
|+.++.-..+.
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 55555544443
No 222
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.98 E-value=0.027 Score=60.06 Aligned_cols=116 Identities=8% Similarity=0.043 Sum_probs=87.0
Q ss_pred hhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHH
Q 003991 364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-GTARAFQRELEAAISDFTEAI 442 (781)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al 442 (781)
......+..++...|..-..|-..|..-++.|..+.+.+.|++.+..-|.....|... +.+-...|+.+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4444456677788888888999999999999999999999999999888777777544 334445678888888888888
Q ss_pred HhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003991 443 QSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFE 479 (781)
Q Consensus 443 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 479 (781)
.....+ ...|-..-..-..++++..-...|++.++..
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP 181 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP 181 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh
Confidence 765543 3455555555567788888888888888753
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.96 E-value=0.001 Score=68.76 Aligned_cols=192 Identities=17% Similarity=0.122 Sum_probs=117.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 003991 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (781)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 498 (781)
..+..-..+..+...-++...+|++++|+.+++|..++.- ...-..+|..+|+++++..... +.........|.
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~ 245 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGH 245 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccc
Confidence 3444455667788888888888888888888888776642 2334678888888887654321 111111111111
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991 499 FNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECL 574 (781)
Q Consensus 499 ~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~ 574 (781)
.-+ .+...+.+ ..+...+|.+..++|+.++|++.++..++..|. +..+..++..++...+.|.++...+
T Consensus 246 ~~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 246 FWE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 111 11111111 334566888888888888888888888877664 4567788888888888888888888
Q ss_pred HHHHhh-CCCCHHHHHHHHHHHHH-CCC---------------HHHHHHHHHHhhccCCCCHHHHH
Q 003991 575 QQVLYI-DKRFSKAYHLRGLLLHG-LGQ---------------HKKAIKDLSSGLGIDPSNIECLY 623 (781)
Q Consensus 575 ~~al~~-~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~ 623 (781)
.+.-++ -|..+...+..+.+-.+ .++ -..|++.+.+|++.+|.-+..+.
T Consensus 319 ~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 319 AKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 775433 24445544444443322 111 13466778888888887665444
No 224
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0023 Score=59.71 Aligned_cols=200 Identities=15% Similarity=0.062 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490 (781)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 490 (781)
.+..-+.+|....+|++|..++.++.+-..++. .++-..+.+...+..+.++..+++++ .
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA--------------s 98 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA--------------S 98 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------------H
Confidence 344456677777888888888888775433331 12223333333344444444444443 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHc
Q 003991 491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDL 564 (781)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~ 564 (781)
..|...|..+.|-..++++-+ ....-++++|+.+|++++.+.... .+.+-..++++.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 345566666666666665543 334567888899998888764433 45566778899999
Q ss_pred CCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHHhCC
Q 003991 565 ANSEKALECLQQVLYI------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPSNIECLYLRASCYHAIGE 634 (781)
Q Consensus 565 g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~ 634 (781)
..+.+|-..+.+-... .++....+.....++....+|..|..+++...++ .|++.....+|-..| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 9999998888775432 2333455666667777778999999999997765 345566666666655 5688
Q ss_pred HHHHHHHHHHHH
Q 003991 635 YREAIKDYDAAL 646 (781)
Q Consensus 635 ~~~A~~~~~~al 646 (781)
.++..+.+.--.
T Consensus 243 ~E~~~kvl~sp~ 254 (308)
T KOG1585|consen 243 IEEIKKVLSSPT 254 (308)
T ss_pred HHHHHHHHcChH
Confidence 888877765443
No 225
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.94 E-value=0.0004 Score=70.07 Aligned_cols=136 Identities=10% Similarity=-0.054 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (781)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (781)
+|..+.....+.+..+.|...|.+|.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566667777777778888889998886666677888888888776 4555569999999999889888888888888888
Q ss_pred CCCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 598 LGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 598 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
.|+.+.|..+|++++..-|... .+|......-...|+.+...+..+++.+..|++..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999988766644 57888888888899999999999999999888554
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.94 E-value=1.3e-05 Score=63.38 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCC
Q 003991 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689 (781)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 689 (781)
+-..++.++|.+|..+|++++|+.+|++++++.-...+.....+.++..+|.++...|++++|+.+++++.++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3457889999999999999999999999998843334344556889999999999999999999999988764
No 227
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.94 E-value=0.0029 Score=65.62 Aligned_cols=190 Identities=13% Similarity=0.027 Sum_probs=112.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 003991 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (781)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (781)
......+..+...-++.-.+|++++|+.+.+|..+|.-. ..-..+|..+|+++++...... .........|..-
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~ 247 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchh
Confidence 344467789999999999999999999999999887642 3346788888888876432211 1111111111111
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 467 EAIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLK 542 (781)
Q Consensus 467 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (781)
+ .....+. ...+...+|.+..+.|+.++|++.++..++..|. +..++.++..++..++.|.++...+.+
T Consensus 248 e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 248 E-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred h-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 1111111 1334556777777777777777777777766654 345666777777777777777776666
Q ss_pred HHhh-CcccHHHHHHHHHHHHH-------------cC---CHHHHHHHHHHHHhhCCCCHHHHH
Q 003991 543 AIQL-DRNFLEAWGHLTQFYQD-------------LA---NSEKALECLQQVLYIDKRFSKAYH 589 (781)
Q Consensus 543 al~~-~~~~~~~~~~la~~~~~-------------~g---~~~~A~~~~~~al~~~~~~~~~~~ 589 (781)
.-+. -|+.....+.-+.+..+ .| .-..|++.+.++++.+|.-+..+.
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 4322 23344433333333221 11 013467788888888887665443
No 228
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.0022 Score=60.45 Aligned_cols=164 Identities=16% Similarity=0.219 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHH
Q 003991 467 EAIQDLSKALEFEPNSADILHERGIVNFKFK-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK-KAEEAHLKAI 544 (781)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al 544 (781)
.|+..-..++.++|.+..+|...-.++..++ +..+-++++.+.++.+|.+..+|...-.+....|++. .-+++...++
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 3344444444444444444433333333322 3344444444444445555444444444444444444 4444444444
Q ss_pred hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CC-----CHHHHHHHHHHhhccCCCC
Q 003991 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-LG-----QHKKAIKDLSSGLGIDPSN 618 (781)
Q Consensus 545 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~al~~~p~~ 618 (781)
..+..+..+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+....+...|++
T Consensus 141 ~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~N 220 (318)
T KOG0530|consen 141 DDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNN 220 (318)
T ss_pred hccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444445555554444444443333333322111111 00 1222334444445555555
Q ss_pred HHHHHHHHHHHH
Q 003991 619 IECLYLRASCYH 630 (781)
Q Consensus 619 ~~~~~~la~~~~ 630 (781)
..+|..|.-++.
T Consensus 221 eSaWnYL~G~l~ 232 (318)
T KOG0530|consen 221 ESAWNYLKGLLE 232 (318)
T ss_pred ccHHHHHHHHHH
Confidence 555555554444
No 229
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.87 E-value=0.045 Score=56.14 Aligned_cols=95 Identities=8% Similarity=-0.073 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--H--H---------
Q 003991 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--G--E--------- 450 (781)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~--~--------- 450 (781)
+..+-...+-..+.+.-...+-..-+..|..+......|...++.+.+.+|+..+..-...-... + +
T Consensus 48 l~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 48 LGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 33344444455566655555555556677777777888999999999999999887766542222 1 1
Q ss_pred H--HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003991 451 A--WKRRGQARAALGESVEAIQDLSKALEF 478 (781)
Q Consensus 451 ~--~~~la~~~~~~g~~~~A~~~~~~al~~ 478 (781)
. -...+.++...|.+.++...+++.+..
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 1 123577888999999999998887754
No 230
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00015 Score=67.11 Aligned_cols=96 Identities=20% Similarity=0.160 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (781)
-+-..|..++....|..|+..|.+++..+|..+..+.+.+.++++..+++.+.....+++++.|+....++.+|.+....
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 34456777888889999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 003991 463 GESVEAIQDLSKALEF 478 (781)
Q Consensus 463 g~~~~A~~~~~~al~~ 478 (781)
..+++|+..+.++..+
T Consensus 92 ~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSL 107 (284)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999988665
No 231
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.86 E-value=0.00076 Score=70.35 Aligned_cols=111 Identities=15% Similarity=0.011 Sum_probs=93.8
Q ss_pred HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 003991 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP--EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (781)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (781)
...+..+.+......-+..+..+|+..+|..++..++-..|... .++..+|.++.+.|...+|--.+..|+...|.-.
T Consensus 204 ~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t 283 (886)
T KOG4507|consen 204 EGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFT 283 (886)
T ss_pred HhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccc
Confidence 34555666666666666677779999999999999998777644 4788999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003991 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (781)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 482 (781)
.-++.++.++...+.+.....+|..+.+..|..
T Consensus 284 ~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 284 SNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred ccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 778999999999999999999999999988865
No 232
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.85 E-value=0.00055 Score=69.07 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003991 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (781)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 529 (781)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344555555555556666666666664444445566666666444 3444446666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhhCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003991 530 IGEYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (781)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 583 (781)
.|+.+.|...|++++..-+... .+|......-...|+.+...++.+++.+..|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6666666666666666544433 45666666666667777777777666666665
No 233
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.82 E-value=0.011 Score=62.52 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC---------
Q 003991 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN----FLEAWGHLTQFYQDLANSEKALECLQQVLYI-DK--------- 582 (781)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~--------- 582 (781)
...+...+.+....|.++.|...+.++....+. .+.+.+..+.++...|+..+|+..++..+.. ..
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 345555555566666666666655555543311 2445555555555566666666555555441 00
Q ss_pred ------------------------CCHHHHHHHHHHHHHC------CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991 583 ------------------------RFSKAYHLRGLLLHGL------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (781)
Q Consensus 583 ------------------------~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (781)
....++..+|...... +..++++..|..+++.+|....+|+.+|..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 0133556666666666 7788888888888888888888888877776544
No 234
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.81 E-value=5.1e-05 Score=51.88 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHH
Q 003991 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC 660 (781)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 660 (781)
.++..+|.+|..+|++++|++.|+++++.+|+++++|..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 45667777777777777777777777777777776655443
No 235
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.81 E-value=3.6e-05 Score=52.65 Aligned_cols=43 Identities=23% Similarity=0.135 Sum_probs=35.9
Q ss_pred hhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 003991 69 IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111 (781)
Q Consensus 69 ~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 111 (781)
|..+..+|.+|.++|++++|++.++++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3457788888888888888888888888888888888888875
No 236
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.79 E-value=0.044 Score=59.12 Aligned_cols=262 Identities=18% Similarity=0.095 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHh----CCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQ------ILKE----DPMYPE-ALIGRGTARAFQRELEAAISDFTEAIQS----- 444 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~------~l~~----~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~----- 444 (781)
.+.+-.-|..+-...++++|+++|++ ++++ .|.... .--.-|.-+...|+++.|+..|-.+--+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie 740 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE 740 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 34455556677777888888888765 2332 232211 1123355566778888887776543110
Q ss_pred -------CC-------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003991 445 -------NP-------------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504 (781)
Q Consensus 445 -------~p-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 504 (781)
-| .....|-.++.-|...|+|+-|.+.|.++- .......+|.+.|+|..|.+
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHH
Confidence 00 011234456677777788888887776542 22333455667777777777
Q ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHH-------------HHHHHHH------Hh----hCccc-HHHHHHHHH
Q 003991 505 DLSACVKLDKEN-KSAYTYLGLALSSIGEYKKA-------------EEAHLKA------IQ----LDRNF-LEAWGHLTQ 559 (781)
Q Consensus 505 ~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A-------------~~~~~~a------l~----~~~~~-~~~~~~la~ 559 (781)
.-.++. .|.. ...|...+.-+...|+|.+| +..|.+. +. ..|+. ......+|.
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAK 890 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHH
Confidence 666653 2332 23444455555555555444 4444332 11 11221 345556677
Q ss_pred HHHHcCCHHHHHHHHHHHHhh------CC-----------------CCHH--HHHH---------HHHHHHHCCCHHHHH
Q 003991 560 FYQDLANSEKALECLQQVLYI------DK-----------------RFSK--AYHL---------RGLLLHGLGQHKKAI 605 (781)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~------~~-----------------~~~~--~~~~---------la~~~~~~g~~~~A~ 605 (781)
-+...|+...|...|-++-.. .. .+.. +.+. -..++-+.|-.+.|+
T Consensus 891 e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~i 970 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAI 970 (1636)
T ss_pred HHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHh
Confidence 777777777777666554211 00 0100 0000 011223344444444
Q ss_pred HHH------HHhhc-----cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991 606 KDL------SSGLG-----IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (781)
Q Consensus 606 ~~~------~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (781)
... +-+.. .....+.++..++..+...|++++|-++|-.+++++.-+
T Consensus 971 d~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 971 DFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred hhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 321 11111 122346788899999999999999999999999987544
No 237
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.76 E-value=0.017 Score=61.04 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=112.8
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-C--C---
Q 003991 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-D--P--- 616 (781)
Q Consensus 547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~--p--- 616 (781)
.......|...+.+..+.|.++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+.. . +
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 445577899999999999999999999999987652 25778888999999999999999999888771 0 0
Q ss_pred ----------------------C------CHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 003991 617 ----------------------S------NIECLYLRASCYHAI------GEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (781)
Q Consensus 617 ----------------------~------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 662 (781)
. ...++..+|...... +..+++...|.++++++|+...+|...+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0 124566677777777 888999999999999999999988888777
Q ss_pred HHHHHHHHH----------HHhchhhHHHHHhhhcCCCcc
Q 003991 663 FYQKEIALY----------TASKINSEFCWFDIDGDIDPL 692 (781)
Q Consensus 663 ~~~~~~~~~----------~~~~~~~A~~~~~~~~~~~p~ 692 (781)
+...-.... ...-...|+.+|-++..+.++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 666543332 122234578888888887776
No 238
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.74 E-value=0.061 Score=60.08 Aligned_cols=303 Identities=17% Similarity=0.080 Sum_probs=192.4
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CcHHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNP-----SAGEAW 452 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~ 452 (781)
.-.+.+..-+..+...|...+|+...-.+ .+|... ..+-..+.-+...++..-- ...++.-| .++...
T Consensus 345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll----~~~~~~lP~~~l~~~P~Lv 418 (894)
T COG2909 345 RLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLL----LAWLKALPAELLASTPRLV 418 (894)
T ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHH----HHHHHhCCHHHHhhCchHH
Confidence 33677777788888899999998775543 233322 2222334444444444332 22333333 345566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HH
Q 003991 453 KRRGQARAALGESVEAIQDLSKALEFEPN--S-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KS 518 (781)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~ 518 (781)
...+.......++.+|..++.++...-+. . ....-..|.+....|+++.|++..+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 77788888999999999999888765443 1 3445567788889999999999999999987765 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHH--HHHHHHHH----HhhCCCCHH
Q 003991 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEK--ALECLQQV----LYIDKRFSK 586 (781)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~--A~~~~~~a----l~~~~~~~~ 586 (781)
++..+|.+..-.|++++|..+...+.+..... ..+....+.++..+|+... ....+... +...|.+..
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 66778999999999999999999988774332 2333455778888884333 33333322 222333333
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhcc----CCCC--H-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPSN--I-ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (781)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (781)
.....+.++...-+++.+.......++. .|.. . -.++.++.++...|+.++|...+.....+--+......+.
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 3333333333333366666655555544 2322 2 2335899999999999999999999887654442222344
Q ss_pred HHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991 660 CLAFYQKEIALYTASKINSEFCWFDIDG 687 (781)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 687 (781)
+.++.-+.......|+...+..+..+.+
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 4454444455556777777777776643
No 239
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.73 E-value=4.6e-05 Score=48.81 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=17.8
Q ss_pred hhhhHHHHHHhhhCHHHHHHHHHHHHhcCCC
Q 003991 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (781)
Q Consensus 71 ~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~ 101 (781)
.++++|.+++.+|++++|+..|++||+++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666654
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.71 E-value=0.03 Score=60.91 Aligned_cols=153 Identities=15% Similarity=0.091 Sum_probs=115.3
Q ss_pred HcCCHHHHHHHHHHHHhhCcccHHHH--------HHHHHHHH----HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003991 529 SIGEYKKAEEAHLKAIQLDRNFLEAW--------GHLTQFYQ----DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~--------~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (781)
-.|+-+.++..+.++.+. ++-.... +.....+. .....+.|.+.+.......|+.....+..|+++.
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 468999999999998773 2221111 11111111 2456788999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHhhccCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHH
Q 003991 597 GLGQHKKAIKDLSSGLGIDPS----NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYT 672 (781)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 672 (781)
..|+.++|++.|++++..... ..-.++.+|.++..+++|++|..++.+..+.+.-+ .+...|..|.++..
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS------ka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS------KAFYAYLAAACLLM 352 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH------HHHHHHHHHHHHHh
Confidence 999999999999998854332 23568889999999999999999999999876543 44566777777777
Q ss_pred Hhch-------hhHHHHHhhhcC
Q 003991 673 ASKI-------NSEFCWFDIDGD 688 (781)
Q Consensus 673 ~~~~-------~~A~~~~~~~~~ 688 (781)
.++. ++|...|.++..
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHH
Confidence 7777 777777776644
No 241
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.70 E-value=0.013 Score=65.28 Aligned_cols=263 Identities=16% Similarity=0.044 Sum_probs=187.3
Q ss_pred ccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHH
Q 003991 379 ISVDFRLSRGIAQVNE-----GKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQR-----ELEAAISDFTEAIQ 443 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~ 443 (781)
.+..+...+|.+++.- .+.+.|+.+|+.+.+. .-.++.+.+.+|.+|.... ++..|..+|.++-.
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 3466777777777654 5899999999999771 1125667889999998853 78889999999987
Q ss_pred hCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCC
Q 003991 444 SNPSAGEAWKRRGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKEN 516 (781)
Q Consensus 444 ~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~p~~ 516 (781)
.. ++.+.+.+|.++..-. ++..|..+|..+.... +..+.+.++.+|..- .+...|..+++++.+.. .
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~ 395 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--N 395 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--C
Confidence 64 4667788898887765 6789999999998764 678888899888753 47899999999999887 4
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCcccHH---HHH-HHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHH
Q 003991 517 KSAYTYLGLALSSI-GEYKKAEEAHLKAIQLDRNFLE---AWG-HLTQFYQD----LANSEKALECLQQVLYIDKRFSKA 587 (781)
Q Consensus 517 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~---~~~-~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 587 (781)
+.+...++..+... +.++.+.-.+....+..-..+. ++. ........ ..+...+...+.++.. ..++.+
T Consensus 396 ~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a 473 (552)
T KOG1550|consen 396 PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADA 473 (552)
T ss_pred hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHH
Confidence 55555555555433 7777777666655544322211 111 11111111 1245566666666543 456788
Q ss_pred HHHHHHHHHHC----CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhhccCc
Q 003991 588 YHLRGLLLHGL----GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI---GEYREAIKDYDAALDLELDS 652 (781)
Q Consensus 588 ~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 652 (781)
...+|.+|..- .+++.|...|.++.... +...+++|.++..- .....|..+|.++.+.+...
T Consensus 474 ~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 474 ILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 88899888764 46999999999998876 88999999998641 12789999999998876543
No 242
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.011 Score=55.88 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 003991 434 AISDFTEAIQSNPSAGEAWKRRGQARAAL-GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVK 511 (781)
Q Consensus 434 A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~a~~ 511 (781)
|+.....++.++|.+..+|...-.++..+ .+..+-+.++.+.++-+|++..+|...-.+....|++. .-+++.+.++.
T Consensus 62 Al~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~ 141 (318)
T KOG0530|consen 62 ALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLD 141 (318)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHh
Confidence 33334444445555544444444443332 23444455555555555555555555555555555544 45555555555
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-c-----CCHHHHHHHHHHHHhhCCCCH
Q 003991 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-L-----ANSEKALECLQQVLYIDKRFS 585 (781)
Q Consensus 512 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~-----g~~~~A~~~~~~al~~~~~~~ 585 (781)
.+..+..+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... . -..+.-+.+..+.|...|++.
T Consensus 142 ~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~Ne 221 (318)
T KOG0530|consen 142 DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNE 221 (318)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCc
Confidence 5555555555555555555555555555555555544444444322111111 0 112233444555556666666
Q ss_pred HHHHHHHHHHHH
Q 003991 586 KAYHLRGLLLHG 597 (781)
Q Consensus 586 ~~~~~la~~~~~ 597 (781)
.+|..|.-++..
T Consensus 222 SaWnYL~G~l~~ 233 (318)
T KOG0530|consen 222 SAWNYLKGLLEL 233 (318)
T ss_pred cHHHHHHHHHHh
Confidence 666666555553
No 243
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.68 E-value=7.3e-05 Score=76.71 Aligned_cols=111 Identities=24% Similarity=0.326 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (781)
..-..|..++..+.|+.|+..|.++++++|+.+..+-..+.++...+++..|+..+.++++.+|....+|+..|.++...
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34456777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991 463 GESVEAIQDLSKALEFEPNSADILHERGIVN 493 (781)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (781)
+.+.+|+..|+....+.|+++.+...+..+-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 9999999999999999999998877766553
No 244
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0012 Score=61.34 Aligned_cols=105 Identities=27% Similarity=0.358 Sum_probs=85.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHccCHHHHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILK--------EDPMYP----------EALIGRGTARAFQRELEAAISDFTEA 441 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~a 441 (781)
.+..+...|..++..|+|.+|...|..++. ..|..+ ..+.+.+.|+...|+|-++++....+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 366788899999999999999999998864 234433 45677888888888888888888888
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003991 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484 (781)
Q Consensus 442 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 484 (781)
+...|.+..+++..|.++...-+..+|..-|.++++++|.-..
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 8888888888888888888888888888888888888875533
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.61 E-value=0.026 Score=57.96 Aligned_cols=81 Identities=10% Similarity=0.003 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHH-HHHhCCCcHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAF---QRELEAAISDFTE-AIQSNPSAGEA 451 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~ 451 (781)
+++....+-..|....+|+.-+++.+.+-.. -++.+.+.+..|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3444444444555555555555555554333 23344445555555555 5555555555555 22334444555
Q ss_pred HHHHHHHHH
Q 003991 452 WKRRGQARA 460 (781)
Q Consensus 452 ~~~la~~~~ 460 (781)
+..+|.+|.
T Consensus 220 ~gL~GRIyK 228 (374)
T PF13281_consen 220 LGLLGRIYK 228 (374)
T ss_pred HHHHHHHHH
Confidence 555555553
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.59 E-value=0.0086 Score=61.43 Aligned_cols=191 Identities=15% Similarity=0.045 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHH
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAA---LGESVEAIQDLSK-ALEFEPNSADIL 486 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~~ 486 (781)
+++...+-.+|....+|+.-+...+..-.+ .++.+.+.+.+|.++.+ .|+.++|+..+.. .....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344555555666666666666666655544 33445555556666665 5666666666666 333444556666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC
Q 003991 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (781)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 566 (781)
..+|.+|-.. .++....+. ...++|+..|.++.+.+|+. ..-.+++.++...|.
T Consensus 221 gL~GRIyKD~------------~~~s~~~d~-------------~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 221 GLLGRIYKDL------------FLESNFTDR-------------ESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHH------------HHHcCccch-------------HHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 6666655332 000011111 11566777777777666433 223344444444444
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003991 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (781)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 646 (781)
..+...-+++.. ..++..+.+.|. .-.-.+.+..-.++.+..-.|++++|.+.+++++
T Consensus 275 ~~~~~~el~~i~----------~~l~~llg~kg~------------~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 275 DFETSEELRKIG----------VKLSSLLGRKGS------------LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred cccchHHHHHHH----------HHHHHHHHhhcc------------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 222222111111 111111111111 1112234455556666666777777777777777
Q ss_pred hhccCcH
Q 003991 647 DLELDSM 653 (781)
Q Consensus 647 ~~~p~~~ 653 (781)
.+.|...
T Consensus 333 ~l~~~~W 339 (374)
T PF13281_consen 333 KLKPPAW 339 (374)
T ss_pred hcCCcch
Confidence 7765543
No 247
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.58 E-value=6.1e-05 Score=47.84 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=19.3
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 003991 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (781)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 639 (781)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666554
No 248
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.58 E-value=0.00015 Score=46.36 Aligned_cols=34 Identities=35% Similarity=0.686 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (781)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (781)
+.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3567888888888888888888888888888764
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.54 E-value=0.00021 Score=45.72 Aligned_cols=34 Identities=32% Similarity=0.644 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (781)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (781)
+.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567788888888888888888888888888764
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0058 Score=59.29 Aligned_cols=151 Identities=17% Similarity=0.146 Sum_probs=103.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH-HHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-AWKRRGQA 458 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~ 458 (781)
..+.-+..+......|++.+|...|..++...|++..+...++.++...|+.+.|...+...-........ .+......
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 45566777888999999999999999999999999999999999999999999999887764332222211 11111122
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Q 003991 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIG 531 (781)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g 531 (781)
+.+.....+. ..+++.+..+|++.++.+.++..+...|+.++|++.+-..++.+.. +..+...+-.++...|
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2232222222 2344556678888888888888888888888888888777776533 2344444444444444
No 251
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.089 Score=59.16 Aligned_cols=231 Identities=15% Similarity=0.116 Sum_probs=123.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 003991 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (781)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 467 (781)
|......+-|++|..+|.+.- -+..+.. ......+..+.|.++.+++ +.+.+|..+|....+.|...+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~----~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD----MNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc----ccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHH
Confidence 455566666667766665421 1111111 1112234445555544443 345666677777666777777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----------------------------CCHHH
Q 003991 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK----------------------------ENKSA 519 (781)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p----------------------------~~~~~ 519 (781)
|++.|-++ +++..+.....+..+.|.|++-+.++..+-+... +.+.
T Consensus 1123 AieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~- 1196 (1666)
T KOG0985|consen 1123 AIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVAN- 1196 (1666)
T ss_pred HHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchh-
Confidence 76666554 3555666666666666666666666665544321 1111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----------------
Q 003991 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----------------- 582 (781)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------- 582 (781)
....|.-++..|.|+.|.-+|.. ..-|..++..+..+|+|..|...-+++-....
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence 12234444444555544444432 34456667777777777777776666532100
Q ss_pred --------CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991 583 --------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (781)
Q Consensus 583 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (781)
-+.+-+-.+...|...|-+++-+..++.++-+..-+...+..+|.+|.+- ++++-.++++-.
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 01222344555566666777777777766666655556666666666543 344444444433
No 252
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.45 E-value=0.082 Score=59.05 Aligned_cols=244 Identities=18% Similarity=0.053 Sum_probs=170.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC--
Q 003991 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQS-----NPSAGEAWKRRGQARAALG-- 463 (781)
Q Consensus 396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 463 (781)
....|..+++.+.+. .+..+.+.+|.+|..- .|.+.|+.+|..+... .-..+.+.+.+|.+|..-.
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888877554 4677888888888765 6899999999999771 1124557788999998843
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 003991 464 ---ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEY 533 (781)
Q Consensus 464 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~ 533 (781)
++..|+.+|.++.... ++.+.+.+|.++..-. ++..|.++|..|... .+..+.+.++.+|.. ..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 6788999999998875 5678888998888765 678999999998765 467788888888875 3578
Q ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHH----CCCHHHH
Q 003991 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVLYIDKRFS----KAYHLRGLLLHG----LGQHKKA 604 (781)
Q Consensus 534 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~----~g~~~~A 604 (781)
..|..++.++.+.. .+.+...++..+... +.+..+...+.......-..+ ............ ..+...+
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 99999999999887 455555555554433 666666665555443322111 111111111111 1245666
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhhc
Q 003991 605 IKDLSSGLGIDPSNIECLYLRASCYHAI----GEYREAIKDYDAALDLE 649 (781)
Q Consensus 605 ~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~ 649 (781)
...+.++.. ..++.+...+|.+|..- .+++.|...|.++....
T Consensus 459 ~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 459 FSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 666666644 45678888899988765 35899999999998776
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.43 E-value=0.061 Score=58.58 Aligned_cols=177 Identities=15% Similarity=0.023 Sum_probs=127.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HcCCHHHHHH
Q 003991 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSA------YTYLGLALS----SIGEYKKAEE 538 (781)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~------~~~la~~~~----~~g~~~~A~~ 538 (781)
-.|.-++.+-| .....+..+.--.|+-+.++..+.++.+...-. +-+ |+.....+. .....+.|.+
T Consensus 178 G~f~L~lSlLP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 178 GLFNLVLSLLP---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHHhCC---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 34555566555 233334444455688899999998887632211 111 111111111 2456788999
Q ss_pred HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHhhcc
Q 003991 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (781)
Q Consensus 539 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (781)
.+.......|+..-..+..|+++...|+.++|+..|++++...... .-.++.+|.++.-+.+|++|..+|.+..+.
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988533322 345788999999999999999999999987
Q ss_pred CCCC-HHHHHHHHHHHHHhCCH-------HHHHHHHHHHHhhc
Q 003991 615 DPSN-IECLYLRASCYHAIGEY-------REAIKDYDAALDLE 649 (781)
Q Consensus 615 ~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 649 (781)
+.-. ....+..|.|+...|+. ++|..+|.++-.+.
T Consensus 335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 6553 45567788999999999 77777777776553
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.40 E-value=0.00036 Score=44.54 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 003991 104 QAYILKGCAFSALGRKEEALSVWEKGYEHAL 134 (781)
Q Consensus 104 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 134 (781)
++++.+|.++..+|++++|+.+|++++.+.|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3455555555555555555555555544444
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.38 E-value=0.11 Score=52.37 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=29.9
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991 649 ELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (781)
Q Consensus 649 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 687 (781)
.|-.+++....-...++.|...|..++|..|..||+-+.
T Consensus 235 ~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 235 KQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 344555555555677888999999999999999997554
No 256
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.34 E-value=0.46 Score=54.09 Aligned_cols=286 Identities=19% Similarity=0.135 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC--cH----HHHHHHHHHHHHcCCHH
Q 003991 398 ASAISIFDQILKEDPM----YPEALIGRGTARA-FQRELEAAISDFTEAIQSNPS--AG----EAWKRRGQARAALGESV 466 (781)
Q Consensus 398 ~~A~~~~~~~l~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~ 466 (781)
..|+.+++.+++..+- .+.+.+.+|.+++ ...+++.|..++++++.+... .. .+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 3456666666642211 2345666777666 567777777777777665532 22 23445566666666555
Q ss_pred HHHHHHHHHHHhCCCC----HHHHHH-H-HHHHHhcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCHH
Q 003991 467 EAIQDLSKALEFEPNS----ADILHE-R-GIVNFKFKDFNAAVEDLSACVKLD--KENKSA----YTYLGLALSSIGEYK 534 (781)
Q Consensus 467 ~A~~~~~~al~~~p~~----~~~~~~-l-a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~----~~~la~~~~~~g~~~ 534 (781)
|...+++.++..... ....+. + .......+++..|++.++...... ..++.+ ....+.+....+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 777777776654431 111111 1 222222367777777777766654 233322 222345555566666
Q ss_pred HHHHHHHHHHhhCc----------ccHHHHHHHHH--HHHHcCCHHHHHHHHHHHH---hh---CC---C----------
Q 003991 535 KAEEAHLKAIQLDR----------NFLEAWGHLTQ--FYQDLANSEKALECLQQVL---YI---DK---R---------- 583 (781)
Q Consensus 535 ~A~~~~~~al~~~~----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~al---~~---~~---~---------- 583 (781)
++++..+++..... ....+|..+-. ++...|+++.+...+++.- .. .+ .
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 66666666533211 11333333333 3345566555555444331 11 11 0
Q ss_pred -----------C------------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-------CCC---------------
Q 003991 584 -----------F------------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-------PSN--------------- 618 (781)
Q Consensus 584 -----------~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~--------------- 618 (781)
. .-+|..-|......+..+.|.+++.++++.- +..
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 0 0123333555666676667777777776431 110
Q ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH--HHHHHHHHHHHHHHHHHHHhchhhHHHHHh
Q 003991 619 ----IECLYLRASCYHAIGEYREAIKDYDAALDLELDSME--KFVLQCLAFYQKEIALYTASKINSEFCWFD 684 (781)
Q Consensus 619 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 684 (781)
..+.+..+.+..-.|++..|....+.+.......+. .-......+|-.|..+...|+++.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 124556777888899999999999988876543322 123345678888888889999999999997
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.013 Score=57.03 Aligned_cols=149 Identities=18% Similarity=0.146 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HH
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG--IV 492 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~ 492 (781)
.+.-+..+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-...... ......+ ..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~l 212 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHH
Confidence 34456667778889999999999999999999999999999999999999999988876542222211 1111111 22
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHcC
Q 003991 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLA 565 (781)
Q Consensus 493 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g 565 (781)
+.......+ ...+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..+..+... ..+...+-.++...|
T Consensus 213 l~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 222222221 123455566789999999999999999999999998888888765432 344444444444444
No 258
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.30 E-value=0.48 Score=53.33 Aligned_cols=234 Identities=15% Similarity=0.018 Sum_probs=156.2
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA- 448 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 448 (781)
.+|...+..|.......++.+|..++.++...-+. .....-..|.+....|+++.|++..+.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 35677888899999999999999999988765433 12445667888899999999999999999987765
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCH--HHHHHHHHHHHH----h
Q 003991 449 ----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDF--NAAVEDLSACVK----L 512 (781)
Q Consensus 449 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~--~~A~~~~~~a~~----~ 512 (781)
..++..+|.+..-.|++++|..+...+.+..... ..+....+.++..+|+. .+....+...-. .
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 3467788899999999999999999988773322 23444557778888833 333333332222 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----ccc--H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-
Q 003991 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD----RNF--L-EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF- 584 (781)
Q Consensus 513 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~- 584 (781)
.|.........+.++...-+++.+.......++.. |.. . -+.+.++.+++..|+.++|...+........+.
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 33333333333444433333666666655555442 222 1 233589999999999999999998876543222
Q ss_pred H------HHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991 585 S------KAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (781)
Q Consensus 585 ~------~~~~~la~~~~~~g~~~~A~~~~~~al 612 (781)
+ .++.........+|+.+.|.....+..
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 1 112222333456899999988887743
No 259
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.025 Score=51.44 Aligned_cols=119 Identities=22% Similarity=0.085 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhhCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHH
Q 003991 535 KAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDL 608 (781)
Q Consensus 535 ~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~ 608 (781)
+.....++....++... .+-..++..+...|++++|+..++.++....+. ..+-.+++.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444555555554442 344578888999999999999999988654332 345678999999999999999988
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
.......- .+......|.++...|+.++|+..|+++++..++.+.
T Consensus 150 ~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 150 DTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred hccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 75433211 2345677899999999999999999999999866543
No 260
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.29 E-value=0.37 Score=51.79 Aligned_cols=290 Identities=12% Similarity=-0.044 Sum_probs=176.6
Q ss_pred HHHHHhhccCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003991 368 FCVTRISKSKSISVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQ 443 (781)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (781)
..+++.+..-|.+.+.|...-.... ..|+-..-...|+.|......+ ...|-..-..-..++++..-...|++.++
T Consensus 100 ~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 100 KVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 3456666777888888876654443 4678888888899988765443 34455555555778899999999999887
Q ss_pred hCCCcHHHHH----------------------HHHHHHHH------------------------cCCHHHHHHHHHHHHH
Q 003991 444 SNPSAGEAWK----------------------RRGQARAA------------------------LGESVEAIQDLSKALE 477 (781)
Q Consensus 444 ~~p~~~~~~~----------------------~la~~~~~------------------------~g~~~~A~~~~~~al~ 477 (781)
.--.....++ .+..--.. .+.++++.....+...
T Consensus 180 iP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~ 259 (577)
T KOG1258|consen 180 IPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS 259 (577)
T ss_pred hhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH
Confidence 4211111100 00000000 0111222211111111
Q ss_pred h-----------------------------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991 478 F-----------------------------EPN---SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (781)
Q Consensus 478 ~-----------------------------~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 525 (781)
+ .|- ....|......-...|+++...-.|++++--.......|...+.
T Consensus 260 ~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~ 339 (577)
T KOG1258|consen 260 IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYAR 339 (577)
T ss_pred HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHH
Confidence 1 111 12345555555666777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003991 526 ALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604 (781)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 604 (781)
.....|+.+-|...+..+.+.. |..+.....-+.+-...|++..|...+++.....|+...+-...+......|+.+.+
T Consensus 340 ~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~ 419 (577)
T KOG1258|consen 340 WMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDA 419 (577)
T ss_pred HHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhh
Confidence 7777788777777777766653 555666667777777778888888888888777777777766667777777777777
Q ss_pred HH---HHHHhhccCCC---CHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991 605 IK---DLSSGLGIDPS---NIECLYLRASCY-HAIGEYREAIKDYDAALDLELDSMEKFV 657 (781)
Q Consensus 605 ~~---~~~~al~~~p~---~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (781)
.. .+.....-..+ ....+...+... .-.++.+.|...+.++++..|++...+.
T Consensus 420 ~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~ 479 (577)
T KOG1258|consen 420 NYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYL 479 (577)
T ss_pred hHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHH
Confidence 63 33222221111 123344444433 3456778888888888888888766443
No 261
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.26 E-value=0.011 Score=62.09 Aligned_cols=117 Identities=12% Similarity=-0.030 Sum_probs=96.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003991 402 SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG--EAWKRRGQARAALGESVEAIQDLSKALEFE 479 (781)
Q Consensus 402 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 479 (781)
.....+++..|.+...+..-+..+..+|+..+|..++..++-..|... .++..+|.++.+.|...+|--.+..|+...
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 344556677776655544444455568999999999999999877653 377889999999999999999999999888
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 003991 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (781)
Q Consensus 480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 518 (781)
|....-++.++.++...+.+......|..+.+..|....
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 877777999999999999999999999999998887543
No 262
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.25 E-value=0.58 Score=53.26 Aligned_cols=274 Identities=12% Similarity=0.051 Sum_probs=178.3
Q ss_pred HHHHhhccCCc----cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHccCHHHHHHH
Q 003991 369 CVTRISKSKSI----SVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPM--YP----EALIGRGTARAFQRELEAAISD 437 (781)
Q Consensus 369 ~~~~~~~~~~~----~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~ 437 (781)
|+..+.+..+. .+...+.+|.+++ ...+++.|..++++++..... .. .+.+.++.++.+.+... |...
T Consensus 43 CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~ 121 (608)
T PF10345_consen 43 CLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKN 121 (608)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHH
Confidence 55555533332 3567789999888 688999999999999876533 22 34567788888888777 9999
Q ss_pred HHHHHHhCCC---c-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHH----HHHHHHHHHHhcCCHHHHHHH
Q 003991 438 FTEAIQSNPS---A-GEAWKRR--GQARAALGESVEAIQDLSKALEFE--PNSAD----ILHERGIVNFKFKDFNAAVED 505 (781)
Q Consensus 438 ~~~al~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~~~~la~~~~~~~~~~~A~~~ 505 (781)
+++.++.... . ....+.+ .......+++..|+..++...... +.++. +....+.+....+..+++++.
T Consensus 122 l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~ 201 (608)
T PF10345_consen 122 LDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLEL 201 (608)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 9999986544 2 2222222 223333479999999999998876 34433 233345666777878888888
Q ss_pred HHHHHHhCC------C----CHHHHHHHHH--HHHHcCCHHHHHHHHHHH---Hhh---Cc---c---------------
Q 003991 506 LSACVKLDK------E----NKSAYTYLGL--ALSSIGEYKKAEEAHLKA---IQL---DR---N--------------- 549 (781)
Q Consensus 506 ~~~a~~~~p------~----~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~---~~---~--------------- 549 (781)
++++..... . ...++..+-. ++...|+++.+...+++. +.. .+ .
T Consensus 202 l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~ 281 (608)
T PF10345_consen 202 LQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGS 281 (608)
T ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeeccccc
Confidence 888754321 1 1234443333 445567766666554433 211 11 0
Q ss_pred ------c------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CC---C----------------H
Q 003991 550 ------F------------LEAWGHLTQFYQDLANSEKALECLQQVLYID-------KR---F----------------S 585 (781)
Q Consensus 550 ------~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~---~----------------~ 585 (781)
. .-+|..-|......+..++|.++++++++.- +. . .
T Consensus 282 ~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~ 361 (608)
T PF10345_consen 282 SNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQC 361 (608)
T ss_pred ccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHH
Confidence 0 1122333455566677778888888876431 10 0 1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC---CC------CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003991 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGID---PS------NIECLYLRASCYHAIGEYREAIKDYD 643 (781)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 643 (781)
...+..+.+..-.+++..|......+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 362 ~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 362 YLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 124566777888999999999888776542 22 36788999999999999999999998
No 263
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.0045 Score=56.07 Aligned_cols=91 Identities=22% Similarity=0.145 Sum_probs=73.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccchhh----hhhHHHHHHhhhCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHcCCH
Q 003991 45 KLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSALGRK 119 (781)
Q Consensus 45 ~~~~~g~~~~A~~~y~~ai~~~~~~~~----~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~ 119 (781)
.++..|++++|+..++.++....+..+ -.+.|.+.+++|.+++|++.+...-. +++ ...-.++|.+++..|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCch
Confidence 468999999999999999987733333 55889999999999999998877543 333 33466789999999999
Q ss_pred HHHHHHHHHHHhhccCCh
Q 003991 120 EEALSVWEKGYEHALHQS 137 (781)
Q Consensus 120 ~~A~~~~~~al~~~~~~~ 137 (781)
++|+..|+++++..++++
T Consensus 176 ~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 176 QEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHHHccCChH
Confidence 999999999998774444
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.21 E-value=0.31 Score=49.26 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=31.5
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh
Q 003991 392 VNEGKYASAISIFDQILKED----PMY----PEALIGRGTARAFQR-ELEAAISDFTEAIQS 444 (781)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 444 (781)
..+|+++.|..++.++-... |+. ...++..|......+ +++.|..+++++.+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45677777777777765433 221 134455566666666 666666666666654
No 265
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.18 E-value=0.13 Score=54.08 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 84 LHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (781)
Q Consensus 84 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 130 (781)
-++++..++++-+...|..+.+|..-...-+.-.+|+.-.+.|.+||
T Consensus 34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555553
No 266
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0062 Score=59.59 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 003991 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (781)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 628 (781)
-+..-|+-|++.++|..|+..|.+.+...-.+ ...|.+.|.+....|+|..|+....+++..+|.+..+++.=|.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34445666666677777777777766553322 34566667777777777777777777777777777777777777
Q ss_pred HHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 629 YHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
+..+.++.+|..+.+..+.++.+..
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 7777777777766666666554433
No 267
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.11 E-value=0.17 Score=51.75 Aligned_cols=190 Identities=20% Similarity=0.131 Sum_probs=101.4
Q ss_pred HHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cC
Q 003991 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVNFK----FK 497 (781)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~ 497 (781)
...+++..|...+..+-.. ........++.+|..- .+..+|..+|..+.. ...+...+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCccc
Confidence 3456677777777766552 2224555555555442 345556666663332 2345555666666555 23
Q ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 498 DFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (781)
Q Consensus 498 ~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (781)
+..+|..+|.++....... ..+...++..+..-. ...+. ..+...|...|.+
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~~~~--------------------------~~~~~~A~~~~~~ 180 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QALAV--------------------------AYDDKKALYLYRK 180 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hhhcc--------------------------cHHHHhHHHHHHH
Confidence 5555666665555543222 122344444443321 00000 0012356666666
Q ss_pred HHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC---------------CHHH
Q 003991 577 VLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG---------------EYRE 637 (781)
Q Consensus 577 al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~ 637 (781)
+-... ++.+...+|.+|.. ..++.+|..+|.++.+... ....+.++ ++...| +...
T Consensus 181 aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~ 255 (292)
T COG0790 181 AAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQ 255 (292)
T ss_pred HHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHH
Confidence 55443 56677777766644 3367777777777777655 66677777 555555 5666
Q ss_pred HHHHHHHHHhhccC
Q 003991 638 AIKDYDAALDLELD 651 (781)
Q Consensus 638 A~~~~~~al~~~p~ 651 (781)
|...+..+....+.
T Consensus 256 a~~~~~~~~~~~~~ 269 (292)
T COG0790 256 ALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHHHHcCCh
Confidence 66666666655443
No 268
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.10 E-value=0.015 Score=52.40 Aligned_cols=63 Identities=24% Similarity=0.258 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 456677888889999999999999999999999999999999999999999999999887653
No 269
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.08 E-value=0.46 Score=48.94 Aligned_cols=74 Identities=8% Similarity=0.029 Sum_probs=50.3
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 003991 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (781)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (781)
.+..-++.+|.+.-.|+.+...+-.+|.+++-.+.|++...-.|--+.+|...-..-...+++......|.+++
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 44555677888999999999999999999999999998887777666555443333333344444444444443
No 270
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.079 Score=59.58 Aligned_cols=212 Identities=19% Similarity=0.116 Sum_probs=132.3
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (781)
+.+..|..+|.+.++.|...+|++.|-++ +++..|.....+..+.|.|++-+.++..+-+.... +.+-..+...
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHH
Confidence 34667777777777777777777776554 45566666667777777777777777666543221 1122233344
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003991 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (781)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 538 (781)
|.+.++..+-.+.+ ..|+.+ -.-..|.-++..+.|+.|.-+|.. ..-|..++..+..+|+|..|..
T Consensus 1176 yAkt~rl~elE~fi-----~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-----AGPNVA-NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHhchHHHHHHHh-----cCCCch-hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 44455444433221 233332 233456666666777666666643 2345567777777777777777
Q ss_pred HHHHHHhhCc-------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 003991 539 AHLKAIQLDR-------------------------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (781)
Q Consensus 539 ~~~~al~~~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 593 (781)
.-++|-.... -+.+-+-.+...|...|-+++-+..++.++.+..-+...+..+|.
T Consensus 1242 ~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELai 1321 (1666)
T KOG0985|consen 1242 AARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAI 1321 (1666)
T ss_pred HhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 7666532210 013344567778889999999999999999888877778888888
Q ss_pred HHHHCCCHHHHHHHHHHh
Q 003991 594 LLHGLGQHKKAIKDLSSG 611 (781)
Q Consensus 594 ~~~~~g~~~~A~~~~~~a 611 (781)
+|.+- ++++-.+.++-.
T Consensus 1322 LYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1322 LYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred HHHhc-CHHHHHHHHHHH
Confidence 88764 566666666544
No 271
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.01 E-value=0.75 Score=50.17 Aligned_cols=49 Identities=10% Similarity=-0.075 Sum_probs=39.7
Q ss_pred HhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 80 SQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (781)
Q Consensus 80 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 129 (781)
+.-|+|..|...+ +.++.-|+-...|.+++...+..|+.--|.++|...
T Consensus 455 id~~df~ra~afl-es~~~~~da~amw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 455 IDDGDFDRATAFL-ESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred cccCchHHHHHHH-HhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4557888887744 457888998889999999999999998888888766
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.00 E-value=0.0014 Score=41.74 Aligned_cols=32 Identities=34% Similarity=0.682 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46788888888888888888888888888874
No 273
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.00 E-value=0.46 Score=48.56 Aligned_cols=170 Identities=20% Similarity=0.078 Sum_probs=114.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 003991 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ----RELEAAISDFTEAIQSNPSAGEAWKRRGQARAA- 461 (781)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 461 (781)
.+......+++..|...+..+-.. ..+.....++.+|... .+..+|..+|..+. ...++.+.+.+|.+|..
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G 122 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANG 122 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcC
Confidence 344455778999999999988762 3347788888888764 46888999999554 45677888999999987
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 003991 462 ---LGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK-------DFNAAVEDLSACVKLDKENKSAYTYLGLALSS- 529 (781)
Q Consensus 462 ---~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~- 529 (781)
..+..+|..+|.++....... ..+.+.++.+|..-. +...|...|.++-... ++.+...+|.+|..
T Consensus 123 ~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G 200 (292)
T COG0790 123 RGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG 200 (292)
T ss_pred CCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence 459999999999999886433 344788888877642 2225666666655544 45555556655543
Q ss_pred ---cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Q 003991 530 ---IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (781)
Q Consensus 530 ---~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 565 (781)
..++.+|..+|.++.+... ....+.++ ++...|
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2355666666666655544 45555555 444333
No 274
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.99 E-value=0.00073 Score=66.27 Aligned_cols=95 Identities=27% Similarity=0.384 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 003991 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (781)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 465 (781)
..+...+..|.+++|++.|..+++++|.....+...+.++..++....|+..+..++.++|+....+-..+.....+|++
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 003991 466 VEAIQDLSKALEFEP 480 (781)
Q Consensus 466 ~~A~~~~~~al~~~p 480 (781)
++|...+..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999988764
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.99 E-value=0.0016 Score=41.48 Aligned_cols=31 Identities=39% Similarity=0.486 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 003991 104 QAYILKGCAFSALGRKEEALSVWEKGYEHAL 134 (781)
Q Consensus 104 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 134 (781)
++|+.+|.+|..+|++++|+..|++++++.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5778888888888888888888888865554
No 276
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.91 E-value=0.026 Score=50.77 Aligned_cols=63 Identities=25% Similarity=0.267 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (781)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (781)
..+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++...
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356667888888999999999999999999999999999999999999999999999988754
No 277
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0018 Score=64.05 Aligned_cols=121 Identities=15% Similarity=0.043 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----------cc--h-------hhhhhHHHHHHhhhCHHHH
Q 003991 29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-----------YE--I-------QDICNRAFCYSQLELHKHV 88 (781)
Q Consensus 29 ~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-----------~~--~-------~~~~~rA~~~~~~~~~~~A 88 (781)
.+..+......|..+++.|++++|..|..-|.++...- ++ + ..+.|.|.+-++++.+..|
T Consensus 215 ~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a 294 (372)
T KOG0546|consen 215 FDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGA 294 (372)
T ss_pred cchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcc
Confidence 34444455566677889999999999999998876421 11 1 1155889999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 003991 89 IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL 149 (781)
Q Consensus 89 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 149 (781)
+..+..++..+++..++|+++|..+..+.++++|+++++.+....|..++....+......
T Consensus 295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999998877665544443
No 278
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.84 E-value=0.012 Score=48.26 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=68.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcccchh-------------hhhhHHHHHHhhhCHHHHHHHHHHHHh-------cCCC
Q 003991 42 ELAKLCSLRNWSKAIRILDSLLAQSYEIQ-------------DICNRAFCYSQLELHKHVIRDCDKALQ-------LDPT 101 (781)
Q Consensus 42 ~~~~~~~~g~~~~A~~~y~~ai~~~~~~~-------------~~~~rA~~~~~~~~~~~A~~~~~~al~-------~~p~ 101 (781)
.+.+-+..|-|++|...|.+|++.....+ ++-.++-++..+|+|++++.-..++|- ++.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 44556788999999999999998862221 144678889999999998887777764 3443
Q ss_pred ----chhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 102 ----LLQAYILKGCAFSALGRKEEALSVWEKGY 130 (781)
Q Consensus 102 ----~~~a~~~lg~~~~~~g~~~~A~~~~~~al 130 (781)
++.+.+.+|.++..+|+.++|++.|+++-
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 45588899999999999999999999994
No 279
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.77 E-value=0.14 Score=52.83 Aligned_cols=80 Identities=13% Similarity=0.006 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 003991 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS---IGEYKKAEEAHLK 542 (781)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~ 542 (781)
+.-+.+|++|++.+|++..++..+-.+..+..+.++..+-+++++..+|++...|..+-..... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3444555555555665555555555555555555555555666666666555555433222221 1234455555555
Q ss_pred HHh
Q 003991 543 AIQ 545 (781)
Q Consensus 543 al~ 545 (781)
++.
T Consensus 128 ~l~ 130 (321)
T PF08424_consen 128 CLR 130 (321)
T ss_pred HHH
Confidence 443
No 280
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.70 E-value=0.097 Score=53.99 Aligned_cols=116 Identities=9% Similarity=0.001 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHh
Q 003991 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG---LGQHKKAIKDLSSG 611 (781)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a 611 (781)
.-+.+|++|++.+|++...+..+-....+..+.++..+.+++++..+|+++..|...-..... .-.+......|.++
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555443332222 12344444444444
Q ss_pred hccC-----------C-------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991 612 LGID-----------P-------SNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (781)
Q Consensus 612 l~~~-----------p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (781)
+..- + ....++..+...+.+.|-.+.|+..++-.++++=
T Consensus 129 l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 129 LRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 4320 0 0124566777778888999999999999888763
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.70 E-value=0.0024 Score=41.28 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 003991 105 AYILKGCAFSALGRKEEALSVWEKGYEHA 133 (781)
Q Consensus 105 a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 133 (781)
++..+|.+|..+|++++|+..|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999985543
No 282
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.70 E-value=0.15 Score=48.59 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=30.7
Q ss_pred cCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991 429 RELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALE 477 (781)
Q Consensus 429 g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 477 (781)
.+.++|+..|++++++.+... .++..+..+++.++++++-+..|.+.+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 366677777777777665543 3455556666666666666666666554
No 283
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.68 E-value=0.0059 Score=43.03 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=33.4
Q ss_pred hhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003991 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (781)
Q Consensus 71 ~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 112 (781)
+++..|.+++++|+|.+|...++.+|+.+|++..+..+...+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 467888999999999999999999999999998877665543
No 284
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.67 E-value=0.058 Score=56.27 Aligned_cols=174 Identities=16% Similarity=-0.056 Sum_probs=94.7
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Q 003991 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555 (781)
Q Consensus 476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (781)
+..+|.+.+.+..++.++..+|+...|.+.+++|+-.........+..-..-...|... --|. ...+.....+.+
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r---L~~~--~~eNR~fflal~ 107 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR---LDYR--RPENRQFFLALF 107 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc---cCCc--cccchHHHHHHH
Confidence 45567777777777777777777777777777665321110000000000000000000 0000 000111233455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHH-HHHHHHCCCHHHHHHHHHHhhccCC-----CCHHHHHHHHHH
Q 003991 556 HLTQFYQDLANSEKALECLQQVLYIDKR-FSKAYHLR-GLLLHGLGQHKKAIKDLSSGLGIDP-----SNIECLYLRASC 628 (781)
Q Consensus 556 ~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~ 628 (781)
.....+.+.|-+..|.++.+-.+.++|. ++...... -....+.++|+--+..++....... .-|..-+..+.+
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence 5566677777777777777777777776 55443333 3333556666666666665443211 124566777777
Q ss_pred HHHhCCH---------------HHHHHHHHHHHhhccCcHH
Q 003991 629 YHAIGEY---------------REAIKDYDAALDLELDSME 654 (781)
Q Consensus 629 ~~~~g~~---------------~~A~~~~~~al~~~p~~~~ 654 (781)
+...++. +.|...+.+|+...|.-..
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 7778877 8899999999888886544
No 285
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.66 E-value=0.42 Score=49.18 Aligned_cols=240 Identities=10% Similarity=-0.054 Sum_probs=128.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003991 403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (781)
Q Consensus 403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 482 (781)
.+++++..-|-.++.|+.........++-+.|+....+++...|. ....++.+|...++.+.-..+|+++...-
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L--- 363 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL--- 363 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH---
Confidence 345555555666666666666666666666666666666555444 44555666666666555555555554310
Q ss_pred HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 003991 483 ADILHERGIVNFK---FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (781)
Q Consensus 483 ~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 559 (781)
.--+..+..-.. .|+++..-+++-+-+. ...-++..+-..-.+..-.+.|...|-++-+..-....++..-|.
T Consensus 364 -~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~ 439 (660)
T COG5107 364 -KRKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAF 439 (660)
T ss_pred -HHHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHH
Confidence 000000000000 1222111111111110 112223223333334444566777777665543222333333332
Q ss_pred H-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHhCCHH
Q 003991 560 F-YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYR 636 (781)
Q Consensus 560 ~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 636 (781)
+ +...|++.-|-..|+-.+...|+.+..-...-..+...++-+.|...|+.++..-... ..+|-.+-..-..-|+..
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchH
Confidence 2 4457788888888888888888777666666666777788888888888776543332 345555555556667777
Q ss_pred HHHHHHHHHHhhccCc
Q 003991 637 EAIKDYDAALDLELDS 652 (781)
Q Consensus 637 ~A~~~~~~al~~~p~~ 652 (781)
.+...=++..++.|..
T Consensus 520 ~v~sLe~rf~e~~pQe 535 (660)
T COG5107 520 NVYSLEERFRELVPQE 535 (660)
T ss_pred HHHhHHHHHHHHcCcH
Confidence 7777777777777654
No 286
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.33 Score=51.38 Aligned_cols=250 Identities=13% Similarity=0.094 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003991 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFNAAVEDLS 507 (781)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~ 507 (781)
+...+.+.......|+++......+..+...|+.+.|+..+...+. +.- .-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455555566667888888888888888888887778888877776 211 3356677888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHH---hhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991 508 ACVKLDKENKSAYTYLG-LALSS--------IGEYKKAEEAHLKAI---QLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575 (781)
Q Consensus 508 ~a~~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 575 (781)
.....+.-....|..++ .++.. .|+-+.|..+++... ...|.+...-. .-..+|.++-.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~---------f~~RKverf~~ 398 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK---------FIVRKVERFVK 398 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---------HHHHHHHHHhc
Confidence 87766544444444444 33321 223333333333222 22222211100 00111211111
Q ss_pred HHHhhCCCCHH--HHHHHHHHHHH--CCCHHHHH---HHHHHhhcc-CCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003991 576 QVLYIDKRFSK--AYHLRGLLLHG--LGQHKKAI---KDLSSGLGI-DPSNI-ECLYLRASCYHAIGEYREAIKDYDAAL 646 (781)
Q Consensus 576 ~al~~~~~~~~--~~~~la~~~~~--~g~~~~A~---~~~~~al~~-~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 646 (781)
+.- .++.... .++.++.++-. .....+.. ..++. -+. ++++. --++.+|.++..+|+...|..+|..++
T Consensus 399 ~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~-~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~ 476 (546)
T KOG3783|consen 399 RGP-LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELEN-PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQV 476 (546)
T ss_pred ccc-ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 110 1111111 12223222211 11122222 22211 112 33322 346678999999999999999999998
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHhhhcCCCcccH
Q 003991 647 DLELDSMEKFVLQCLAFYQKEIALYTASK-INSEFCWFDIDGDIDPLFK 694 (781)
Q Consensus 647 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~ 694 (781)
+..-....-.+....++|.+|..+...+. +.++..++.+|.+...++.
T Consensus 477 ~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 477 EKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 55322222234456688999999999988 9999999999988665543
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.53 E-value=0.28 Score=53.09 Aligned_cols=237 Identities=15% Similarity=0.029 Sum_probs=143.8
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----------HHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL----------IGRGTARAFQRELEAAISDFTEAIQSNP 446 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~~~p 446 (781)
....++.|..+|......-.++.|...|-+.-. .|. .... ...|.+-..-|++++|.+.|-.+-..+
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 445788999999999888888888888876522 111 1111 234445555688888888876543221
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (781)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 524 (781)
.-..++...|+|-...+.++..-.-..+ -..++.++|..+..+..|++|.++|...-.. -++.
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ 829 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQI 829 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHH
Confidence 1223455667776666655432211111 1468889999999999999999999875322 3456
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003991 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604 (781)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 604 (781)
.+++...+|++-.. ....-|++...+-.+|..+...|.-++|.+.|-+.- .| .+ --..+..++++.+|
T Consensus 830 ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~p---ka---Av~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 830 ECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LP---KA---AVHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--Cc---HH---HHHHHHHHHHHHHH
Confidence 67777777766433 334457777788888888888888888888775531 12 11 11234455667777
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991 605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (781)
Q Consensus 605 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (781)
.+..++-- -|.-.......+.-+...++.-+|++.++++
T Consensus 898 velaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 898 VELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 76655431 1222222233344445556666666666655
No 288
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.50 E-value=0.13 Score=53.57 Aligned_cols=168 Identities=13% Similarity=-0.002 Sum_probs=90.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---H
Q 003991 407 ILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---A 483 (781)
Q Consensus 407 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 483 (781)
.+..+|.+.+++..++.++..+|+...|.+.+++|+-.........+..-..-...|... .--..+.+ .
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r--------L~~~~~eNR~ff 103 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR--------LDYRRPENRQFF 103 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc--------cCCccccchHHH
Confidence 345677777788888888888888888877777775421111000000000000000000 00001112 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----ccHHHHHH
Q 003991 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDR-----NFLEAWGH 556 (781)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~ 556 (781)
.+.+.....+.+.|-+..|+++.+-.+.++|. ++- +...+-....+.++++--++.++....... ..|...+.
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S 183 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS 183 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence 24555566677778888888888888888877 553 334444444566666666666665443211 12344555
Q ss_pred HHHHHHHcCCH---------------HHHHHHHHHHHhhCC
Q 003991 557 LTQFYQDLANS---------------EKALECLQQVLYIDK 582 (781)
Q Consensus 557 la~~~~~~g~~---------------~~A~~~~~~al~~~~ 582 (781)
.+.+++..++. +.|...+.+|+...|
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 56666666665 666666666666554
No 289
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=4 Score=51.37 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHH-HHHHHcCC
Q 003991 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG-CAFSALGR 118 (781)
Q Consensus 41 ~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg-~~~~~~g~ 118 (781)
..+-..-..|+|..|..+|.+++... +.+..+.+.-.+.+..|.+...+...+-.+.-.++..+-++.+| .+-..+++
T Consensus 1454 ~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcc
Confidence 44444556789999999999999998 44667777777888889999999888888877788777777776 34566676
Q ss_pred HHHHHH
Q 003991 119 KEEALS 124 (781)
Q Consensus 119 ~~~A~~ 124 (781)
++.-..
T Consensus 1534 wD~~e~ 1539 (2382)
T KOG0890|consen 1534 WDLLES 1539 (2382)
T ss_pred hhhhhh
Confidence 665543
No 290
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=1.4 Score=46.05 Aligned_cols=185 Identities=10% Similarity=0.014 Sum_probs=118.3
Q ss_pred cCCHHHHHHHHHHHHHhCCC------CHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHhh---Ccc-------cH
Q 003991 496 FKDFNAAVEDLSACVKLDKE------NKS--------AYTYLGLALSSIGEYKKAEEAHLKAIQL---DRN-------FL 551 (781)
Q Consensus 496 ~~~~~~A~~~~~~a~~~~p~------~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~-------~~ 551 (781)
.|-+++|.++-++++..... ... .+-.+..+-.-.|++.+|++....+.+. .|. .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 46677888877777754211 111 2334566666789999998888777654 333 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-------CHHH
Q 003991 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKR-F--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-------NIEC 621 (781)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~ 621 (781)
.....+|......+.++.|...|..+.+.... + ...-.++|.+|.+.|+-+.-.+.++..-..+.. ...+
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~ 447 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASI 447 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHH
Confidence 56667777777888899999999888876432 2 233457788899888766555555433222111 1356
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q 003991 622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFC 681 (781)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 681 (781)
++..|...+.++++.||...+.+.+++. +..+.....+..+.-.+...+..|+..++..
T Consensus 448 ~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~n 506 (629)
T KOG2300|consen 448 LYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRN 506 (629)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 7778888889999999999999999886 3333333334444445555555555444433
No 291
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.41 E-value=1.5 Score=45.56 Aligned_cols=132 Identities=17% Similarity=0.073 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (781)
...+...|..+..++++.+|..+|.++.+...+.+ +++.++-...+-+++.+.-...+...-+..|..+....-.
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~ 85 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK 85 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34667889999999999999999999988665543 3344444445556778777777777777889888888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003991 456 GQARAALGESVEAIQDLSKALEFEPNSADI---------------LHERGIVNFKFKDFNAAVEDLSACVKL 512 (781)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------------~~~la~~~~~~~~~~~A~~~~~~a~~~ 512 (781)
|...++.+.+.+|++.+......-...... -...+.++...|++.++...+++.+..
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999999999999999988776653222111 123577889999999999999998865
No 292
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.40 E-value=0.0064 Score=38.26 Aligned_cols=33 Identities=36% Similarity=0.654 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (781)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (781)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 357778888888888888888888888887764
No 293
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.22 Score=52.73 Aligned_cols=242 Identities=16% Similarity=0.047 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991 398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLS 473 (781)
Q Consensus 398 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 473 (781)
....+.+....+..|.++...+..+..+...|+.+.|+..++..+. +.. .-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455555566667899999999999999999998889999988877 221 2357788899999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH-HHHHh--------cCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991 474 KALEFEPNSADILHERG-IVNFK--------FKDFNAAVEDLSACV---KLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541 (781)
Q Consensus 474 ~al~~~p~~~~~~~~la-~~~~~--------~~~~~~A~~~~~~a~---~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (781)
...+.+.-+.-.+..++ .+++. .|+-+.|..+++... ...|.+...- ..-..++.++-.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E---------~f~~RKverf~~ 398 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLE---------KFIVRKVERFVK 398 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchh---------HHHHHHHHHHhc
Confidence 98887654444444444 33332 234444444443332 2222221110 000112222211
Q ss_pred HHHhhCcccHH--HHHHHHHHHHH--cCCHHHHHHHHHHHH---hh-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991 542 KAIQLDRNFLE--AWGHLTQFYQD--LANSEKALECLQQVL---YI-DKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (781)
Q Consensus 542 ~al~~~~~~~~--~~~~la~~~~~--~g~~~~A~~~~~~al---~~-~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (781)
+.- .++..+. .++.++.++.. .....+.. -++... .. ++++ .--+..+|.++..+|+...|..+|...+
T Consensus 399 ~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~ 476 (546)
T KOG3783|consen 399 RGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQV 476 (546)
T ss_pred ccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 110 1111111 22333333321 12222222 111111 11 2222 2246678999999999999999999887
Q ss_pred cc---CCC----CHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhccCc
Q 003991 613 GI---DPS----NIECLYLRASCYHAIGE-YREAIKDYDAALDLELDS 652 (781)
Q Consensus 613 ~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 652 (781)
+. ... -|.+++.+|..|..+|. ..++..++.+|-+...++
T Consensus 477 ~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 477 EKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 43 111 36899999999999999 999999999998877543
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.25 E-value=0.006 Score=39.36 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991 621 CLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (781)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (781)
++..+|.+|..+|++++|+.+|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 366788888888888888888888665443
No 295
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.19 E-value=0.43 Score=45.60 Aligned_cols=188 Identities=10% Similarity=0.001 Sum_probs=99.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCcH-HHHHHHHHHHHHc
Q 003991 393 NEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQSN-----PSAG-EAWKRRGQARAAL 462 (781)
Q Consensus 393 ~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~~ 462 (781)
...+.++|+..|+++++..+... .++-.+..+++.+|+|++-...|.+.+..- .+.. .....+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34589999999999999988754 467778889999999999999999887531 1111 1111121211222
Q ss_pred CCHHHHHHHHHHHHHh--CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHH
Q 003991 463 GESVEAIQDLSKALEF--EPNSADIL----HERGIVNFKFKDFNAAVEDLSACVKLDKEN------------KSAYTYLG 524 (781)
Q Consensus 463 g~~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------------~~~~~~la 524 (781)
.+.+--...|+..+.. +..+...| ..+|.+|+..++|.+-.+.+++.-...... .++|..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 3333333333333321 11122222 346667777666666666555544332111 12333334
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCccc--HHH----HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 525 LALSSIGEYKKAEEAHLKAIQLDRNF--LEA----WGHLTQFYQDLANSEKALECLQQVLYI 580 (781)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~----~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (781)
..|..+.+...-...|++++.+...- |.+ .-.=|..+.+.|++++|...|-.+++.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 44555555555555566655543221 111 111233455556666666555555543
No 296
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.022 Score=62.59 Aligned_cols=124 Identities=22% Similarity=0.265 Sum_probs=102.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc--c---hhhhhhHHHHHHhh--hCHHHHHHHHHHHHhcC
Q 003991 27 VRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY--E---IQDICNRAFCYSQL--ELHKHVIRDCDKALQLD 99 (781)
Q Consensus 27 ~~~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~--~---~~~~~~rA~~~~~~--~~~~~A~~~~~~al~~~ 99 (781)
-+++.++..+..+...++..|++++|..|.--|..++.+-| + ...+.+++.|+..+ |+|..++.+|+-|+...
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~ 123 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQ 123 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence 34677788999999999999999999999999999888763 2 22378999988876 69999999999999999
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 003991 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELL 150 (781)
Q Consensus 100 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 150 (781)
|...++.+.++.+|..+++++-|++...-.....|......-.+.++....
T Consensus 124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 999999999999999999999999997777677777755544334444333
No 297
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.06 E-value=0.031 Score=39.44 Aligned_cols=40 Identities=35% Similarity=0.527 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (781)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (781)
+.++.+|..+.++|+|++|..+.+.+++++|++..+..+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4577888888888888888888888888888887755443
No 298
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.05 E-value=0.93 Score=49.28 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHH
Q 003991 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--------AGEAWKRRGQARAALGESVE 467 (781)
Q Consensus 396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~ 467 (781)
..++|+++ ++.+| ++..|..+|......-.++.|...|-++-....- -..--...+.+-..-|++++
T Consensus 678 gledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 678 GLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred chHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 34445444 33455 5899999999988888888888888765321110 00001223444455688888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (781)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (781)
|.+.|-.+-.. + ....++.+.|+|-.....++..-.-+.+ -..++.++|..+..+..+++|.++|.+.-.
T Consensus 753 aek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 753 AEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887554221 1 1223455667777666665542211111 146888999999999999999999987532
Q ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 003991 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625 (781)
Q Consensus 546 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 625 (781)
..++..+++....|++-..+. ..-|++...+-.+|..+...|.-++|.+.|-+.- .|. + -
T Consensus 825 --------~e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk---a---A 884 (1189)
T KOG2041|consen 825 --------TENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK---A---A 884 (1189)
T ss_pred --------hHhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH---H---H
Confidence 234566777777776654433 3457778888889999999999999999886542 222 1 1
Q ss_pred HHHHHHhCCHHHHHHHHHH
Q 003991 626 ASCYHAIGEYREAIKDYDA 644 (781)
Q Consensus 626 a~~~~~~g~~~~A~~~~~~ 644 (781)
-.....++++.+|.+.-++
T Consensus 885 v~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 1233456677777765443
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.93 E-value=0.016 Score=36.36 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPM 413 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 413 (781)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555555554
No 300
>PRK10941 hypothetical protein; Provisional
Probab=95.89 E-value=0.067 Score=52.90 Aligned_cols=72 Identities=14% Similarity=0.037 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHH
Q 003991 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658 (781)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 658 (781)
...++-.++.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 345666777888888888888888888888888888888888888888888888888888888888875443
No 301
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.80 E-value=0.21 Score=52.17 Aligned_cols=87 Identities=9% Similarity=0.018 Sum_probs=45.5
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHhhccC
Q 003991 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ-HKKAIKDLSSGLGID 615 (781)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 615 (781)
...|+.++...+.++..|........+.+.+.+-...|.+++..+|+++..|..-|.-.+..+. .+.|...|.+++..+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 4445555555555555555555554445555555555555555555555555555444444333 555555555555555
Q ss_pred CCCHHHHH
Q 003991 616 PSNIECLY 623 (781)
Q Consensus 616 p~~~~~~~ 623 (781)
|+++..|.
T Consensus 171 pdsp~Lw~ 178 (568)
T KOG2396|consen 171 PDSPKLWK 178 (568)
T ss_pred CCChHHHH
Confidence 55554443
No 302
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.78 E-value=0.13 Score=42.39 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=62.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991 387 RGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (781)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (781)
+|..++..|++-+|+++.+..+..++++. ..+...|.++..+. ......+...-+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~y---------- 59 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRY---------- 59 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHH----------
Confidence 46678888999999999999888877765 34445555554432 111111122111
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003991 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (781)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 512 (781)
.-.++++|.++..+.|..+..++.+|.-+-....|+++..-.++++.+
T Consensus 60 -Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 60 -LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 223556666666666666666666666665566666666666666554
No 303
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.76 E-value=6.3 Score=49.77 Aligned_cols=127 Identities=12% Similarity=0.110 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHh---hC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 003991 567 SEKALECLQQVLY---ID----KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (781)
Q Consensus 567 ~~~A~~~~~~al~---~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 639 (781)
..+-+-.+++++- .+ ..-.+.|...|++....|+++.|..++-.|.+.. -+.+....|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 4444445555442 22 2346789999999999999999999999988876 4689999999999999999999
Q ss_pred HHHHHHHhhc-cCc-------HHHHH--HHHHHHHHHHHHHHHHhchh--hHHHHHhhhcCCCcccHH
Q 003991 640 KDYDAALDLE-LDS-------MEKFV--LQCLAFYQKEIALYTASKIN--SEFCWFDIDGDIDPLFKE 695 (781)
Q Consensus 640 ~~~~~al~~~-p~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~ 695 (781)
..+++.++.+ |+. |.... ..+.+.+..+.-....++++ .-+..|..+..+.|.|..
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~ 1790 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWED 1790 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccC
Confidence 9999999654 431 11111 11122333333333334432 345567777777776554
No 304
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.69 E-value=3.5 Score=43.56 Aligned_cols=94 Identities=10% Similarity=0.042 Sum_probs=79.3
Q ss_pred HHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC-HHHHHHHHHHHHhhc
Q 003991 56 IRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR-KEEALSVWEKGYEHA 133 (781)
Q Consensus 56 ~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~ 133 (781)
+..|..|.... .++...++-..-.-+.+.+.+.-+.|.+++..+|+++..|+-.+.=.+..+. ++.|...|.++|..+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 56788888888 6888888777766677779999999999999999999999999976666555 999999999999999
Q ss_pred cCChHHHHHHHHHHHH
Q 003991 134 LHQSADLKQFLELEEL 149 (781)
Q Consensus 134 ~~~~~~~~~~~~~~~~ 149 (781)
|++|.-.....++.-.
T Consensus 171 pdsp~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 171 PDSPKLWKEYFRMELM 186 (568)
T ss_pred CCChHHHHHHHHHHHH
Confidence 9999887766555543
No 305
>PRK10941 hypothetical protein; Provisional
Probab=95.68 E-value=0.094 Score=51.91 Aligned_cols=70 Identities=16% Similarity=0.082 Sum_probs=64.2
Q ss_pred hhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHH
Q 003991 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLK 141 (781)
Q Consensus 72 ~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 141 (781)
..|.=.+|.+.++++.|+..++..+.++|+.+.-+--+|.+|.++|.+..|..+++..++..|+.+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 4467778999999999999999999999999988888999999999999999999999999999986643
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.65 E-value=0.23 Score=44.21 Aligned_cols=85 Identities=18% Similarity=0.125 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
+..++.........++.+++..++..+--..|..+..-..-|.++...|+|.+|+..|+.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34455555556666666666666666666667766666666677777777777777776666666666666666666666
Q ss_pred HcCCH
Q 003991 461 ALGES 465 (781)
Q Consensus 461 ~~g~~ 465 (781)
..|+.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 66554
No 307
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.59 E-value=0.044 Score=53.04 Aligned_cols=77 Identities=18% Similarity=0.062 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 003991 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629 (781)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 629 (781)
.-...+.-..+.|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+...
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 33445555667888889999999999999998998888888888888888888899999988998888888776643
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.58 E-value=0.25 Score=44.00 Aligned_cols=84 Identities=18% Similarity=0.136 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (781)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (781)
..+..+..+-...++.+++...+...--+.|..+..-..-|+++...|++.+|+..|+.+....|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 44555566666677888888888877778888888888888888888888888888888888788888888888888888
Q ss_pred hCCH
Q 003991 632 IGEY 635 (781)
Q Consensus 632 ~g~~ 635 (781)
+|+.
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 7764
No 309
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.55 E-value=0.048 Score=52.84 Aligned_cols=76 Identities=25% Similarity=0.411 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (781)
.-+..|.-....|+.++|..+|+-++...|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.++.
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3345566778899999999999999999999999999999999999999999999999999999999888776654
No 310
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.37 E-value=0.027 Score=34.75 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=17.1
Q ss_pred hhhHHHHHHhhhCHHHHHHHHHHHHhcCCC
Q 003991 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (781)
Q Consensus 72 ~~~rA~~~~~~~~~~~A~~~~~~al~~~p~ 101 (781)
+.++|.++..+|++++|+..++++++++|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 445555555555555555555555555554
No 311
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.29 E-value=0.21 Score=41.15 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=72.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 003991 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEA---WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (781)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 497 (781)
+|..++..|++-+|++..+..+...+++... +...|.++. +.+......+....+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~------------~lA~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY------------KLAKKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH------------HHHHhccCchHHHHHHH--------
Confidence 4566777888888888888888777666533 333333332 22333332233344433
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (781)
Q Consensus 498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (781)
.+++++.++..+.|..+..++.+|.-+.....|+++..-.++++..
T Consensus 62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3789999999999999999999999988888899999999998865
No 312
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.27 E-value=0.089 Score=53.38 Aligned_cols=106 Identities=12% Similarity=0.165 Sum_probs=83.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccchhh-----------h--------hhHHHHHHhhhCHHHHHHHHHHHHhcCCCchh
Q 003991 44 AKLCSLRNWSKAIRILDSLLAQSYEIQD-----------I--------CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104 (781)
Q Consensus 44 ~~~~~~g~~~~A~~~y~~ai~~~~~~~~-----------~--------~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~ 104 (781)
...|++|+|..|+.-|..+++++....+ . -....||+++++.+-|+.-.-+.|-++|.++.
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~fr 263 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFR 263 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhh
Confidence 3568999999999999999987522211 1 15688999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hccCChHHHHHHHHHHHH
Q 003991 105 AYILKGCAFSALGRKEEALSVWEKGYE---HALHQSADLKQFLELEEL 149 (781)
Q Consensus 105 a~~~lg~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~~~~ 149 (781)
-|.+.+.++..+.+|-+|.+.+--+.- ++.+....+..++.+.-.
T Consensus 264 nHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWq 311 (569)
T PF15015_consen 264 NHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ 311 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH
Confidence 999999999999999999998877643 344444445555555443
No 313
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.22 E-value=0.24 Score=39.86 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCH
Q 003991 401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--GEAWKRRGQARAALGES 465 (781)
Q Consensus 401 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~ 465 (781)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++...|.-
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 455667777777777777777777777777777777777777766554 33444444444444443
No 314
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.13 E-value=0.031 Score=51.86 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=55.6
Q ss_pred HHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 003991 77 FCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS 137 (781)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 137 (781)
....+.+|.+.|.+.+++|+++-|.+...|+++|.-..+.|+++.|.+.|++.|++.|+..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456778999999999999999999999999999999999999999999999988877664
No 315
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.13 E-value=0.034 Score=34.27 Aligned_cols=32 Identities=38% Similarity=0.736 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
.++..+|.++..+|++++|...|++++++.|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666777777777777777777777776664
No 316
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.97 E-value=0.34 Score=50.13 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=79.5
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574 (781)
Q Consensus 495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 574 (781)
..|+.-.|-.-+..+++..|..|......+.+...+|+|+.+...+..+-..-.....+...+-.....+|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 45666666666666777777777766677777777777777776665554443333444455555666677777777776
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (781)
Q Consensus 575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (781)
.-.+...-.++++...-+.....+|-+++|.-++++.+.++|.
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6666655555665555555555666677777777777777664
No 317
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.92 E-value=0.35 Score=38.87 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=36.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHhCC
Q 003991 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGE 634 (781)
Q Consensus 571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 634 (781)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666667766777777777777777777777776666665543 3444444444444444
No 318
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=1.2 Score=47.91 Aligned_cols=126 Identities=15% Similarity=0.077 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 003991 502 AVEDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ-VL 578 (781)
Q Consensus 502 A~~~~~~a~~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 578 (781)
++..+...+.+++.++..+.. +...+...+....+.-.+..++..+|.+..+..+++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444455555544222 244444455555555555555666666655555555555555444444443333 44
Q ss_pred hhCCCCHHHHHHH------HHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 003991 579 YIDKRFSKAYHLR------GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (781)
Q Consensus 579 ~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (781)
...|.+......+ +.....+|+..++.....++....|.++.+...+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 5555554443333 555555555555555555555555555444443333
No 319
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.83 E-value=0.58 Score=38.77 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------h
Q 003991 384 RLSRGIAQVNEGKYASAISIFDQILKEDPM------------YPEALIGRGTARAFQRELEAAISDFTEAIQ-------S 444 (781)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~ 444 (781)
.+..|...+..|-|++|...+.++.+.... +.-++..++.++..+|+|++++....+++. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 344566778889999999999999886432 234567788888889999887777666654 2
Q ss_pred CCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991 445 NPSAGE----AWKRRGQARAALGESVEAIQDLSKALE 477 (781)
Q Consensus 445 ~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~ 477 (781)
+.+... +.+..+..+..+|+.++|+..|+.+-+
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 333322 334455556666666666666665543
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.75 E-value=0.49 Score=49.03 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=100.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 003991 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (781)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 470 (781)
.+..|+...|-.-...++...|..|......+.+...+|+|+.+...+..+-..-..-..+...+-.....+|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 45678888888888889999999998888899999999999999888876655544444555566677778889999988
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 003991 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (781)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~ 517 (781)
...-.+.-.-+++++....+.....+|-++++..++++.+.++|...
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 88888776666777776666666777888999999999998887643
No 321
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.53 E-value=3.4 Score=37.11 Aligned_cols=93 Identities=9% Similarity=0.015 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C--HHHHHHHHHHHHHCCCHHHHHHHHHHhh-ccCCCCHHHHHHHHHHH
Q 003991 555 GHLTQFYQDLANSEKALECLQQVLYIDKR--F--SKAYHLRGLLLHGLGQHKKAIKDLSSGL-GIDPSNIECLYLRASCY 629 (781)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~~~~al~~~~~--~--~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~ 629 (781)
...+.+....|+...|+..|..+-...|- - ..+...-+.++...|-|++-..-.+..- ..+|-...+...||..-
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa 177 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA 177 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH
Confidence 34444444455555555555444332221 0 1122333444444555544433333221 11222334444455555
Q ss_pred HHhCCHHHHHHHHHHHHh
Q 003991 630 HAIGEYREAIKDYDAALD 647 (781)
Q Consensus 630 ~~~g~~~~A~~~~~~al~ 647 (781)
.+.|++..|...|.+...
T Consensus 178 ~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 178 YKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccchHHHHHHHHHHHc
Confidence 555555555555555444
No 322
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.51 E-value=11 Score=42.92 Aligned_cols=118 Identities=11% Similarity=-0.020 Sum_probs=58.8
Q ss_pred HHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Q 003991 528 SSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603 (781)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 603 (781)
....+.+.|...+.+......-. ..++..+|.-....+...+|...+..+..... +.........+....++++.
T Consensus 252 lar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 252 VARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHH
Confidence 34455566666666543332211 22233333333333224455555555432221 22233333334446666666
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003991 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (781)
Q Consensus 604 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 646 (781)
+...+...-..........+.+|..+..+|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666655433333445666677777666777777777776663
No 323
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.46 E-value=3.5 Score=37.01 Aligned_cols=143 Identities=13% Similarity=-0.062 Sum_probs=105.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHH
Q 003991 488 ERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFY 561 (781)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~ 561 (781)
.-+.-+...+..++|+..|...-+..-.. .-+....+.+..+.|+...|+..|..+-...|-. ..+...-+.++
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 34445567788899999998877665433 3456778999999999999999999976654322 23445566778
Q ss_pred HHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991 562 QDLANSEKALECLQQVL-YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (781)
Q Consensus 562 ~~~g~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (781)
...|-|++.....+..- ..+|-...+.-.||..-++.|++..|...|.+... +...|....+.+++.+.
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 88999998877666543 33455566788899999999999999999998877 55556666666666554
No 324
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=2.2 Score=46.00 Aligned_cols=128 Identities=21% Similarity=0.111 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-H
Q 003991 433 AAISDFTEAIQSNPSAGEAWKR--RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-C 509 (781)
Q Consensus 433 ~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-a 509 (781)
.++..+...+..+|.++..+.. ++..+...+....+...+..++..+|.+..+..+++......|....+...+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3555555556666766665333 355666667777777777777777877777777777777666655555544444 6
Q ss_pred HHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 003991 510 VKLDKENKSAYTYL------GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (781)
Q Consensus 510 ~~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 560 (781)
....|.+......+ +.....+|+..++.....++....|.++.+...+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 66777776554444 6666677777777777777777777776555544444
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.13 E-value=0.63 Score=40.67 Aligned_cols=82 Identities=18% Similarity=0.123 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC
Q 003991 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (781)
Q Consensus 554 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 633 (781)
+......-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+..+..+...-.++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444444557888888888887777888888888888888888888888888888888877777778888888888888
Q ss_pred CH
Q 003991 634 EY 635 (781)
Q Consensus 634 ~~ 635 (781)
+.
T Consensus 93 Dp 94 (153)
T TIGR02561 93 DA 94 (153)
T ss_pred Ch
Confidence 74
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.95 E-value=0.62 Score=44.61 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHCCCHH-------HHHHHHHHhhccCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 585 SKAYHLRGLLLHGLGQHK-------KAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
+..+..+|++|...|+.+ .|+..|.++++... +...+.+.+|.+..+.|++++|.++|.+++.....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 345666677777777643 45555555554322 12467888999999999999999999999876544
Q ss_pred c
Q 003991 652 S 652 (781)
Q Consensus 652 ~ 652 (781)
+
T Consensus 198 s 198 (214)
T PF09986_consen 198 S 198 (214)
T ss_pred C
Confidence 3
No 327
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.82 E-value=1.3 Score=37.83 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHhhc-cCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991 585 SKAYHLRGLLLHGLG---QHKKAIKDLSSGLG-IDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (781)
Q Consensus 585 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (781)
....+++++++.... +..+.+.+++..++ -.|. .-+..+.+|..+.+.|+|+.|+.+.+..++..|++.++..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 556778888887655 45667888888886 4443 346788899999999999999999999999999988765443
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.77 E-value=1 Score=39.44 Aligned_cols=82 Identities=12% Similarity=0.012 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (781)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (781)
+..........++.+++..++..+--..|+.+..-..-|.++...|+|.+|+..|+......+..+...-.++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444444446666666666666666666666666666666666777777777666666666555655556666666665
Q ss_pred CH
Q 003991 464 ES 465 (781)
Q Consensus 464 ~~ 465 (781)
+.
T Consensus 93 Dp 94 (153)
T TIGR02561 93 DA 94 (153)
T ss_pred Ch
Confidence 53
No 329
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.74 E-value=0.11 Score=48.52 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=41.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC
Q 003991 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (781)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (781)
...+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34456677777777777777777777777777777777777777777777777777765
No 330
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.60 E-value=0.26 Score=51.67 Aligned_cols=102 Identities=22% Similarity=0.133 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (781)
.+.....|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....++.++|....+++.++.
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 344445555566667778888888888888888888888888887764 56667777777888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Q 003991 458 ARAALGESVEAIQDLSKALEFEPNS 482 (781)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~ 482 (781)
++..++++.+|+.+...+....|.+
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchh
Confidence 8888888888888887777777744
No 331
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.47 E-value=6.2 Score=42.92 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKE--------------DPMYPEALIGRGTARAFQRELEAAISDFTE 440 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (781)
-|-.+|...+..=+++-|.+.|.++-.. ....|. -..+|.++...|++.+|.+.|.+
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHH
Confidence 4566666667777777777777665321 111111 13455555556666666555544
No 332
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.44 E-value=21 Score=42.30 Aligned_cols=100 Identities=23% Similarity=0.206 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHhCCCcHHHHHH
Q 003991 385 LSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQ----R---ELEAAISDFTEAIQSNPSAGEAWKR 454 (781)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~ 454 (781)
+....++...+.|+.|+..|+++-...|.. .++.+..|.....+ | .+++|+.-|++.- -.|..+--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence 344566777888999999999998888764 45777788777653 2 4667777776643 34566667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991 455 RGQARAALGESVEAIQDLSKALEFEPNSADI 485 (781)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 485 (781)
.|.+|..+|++++-++++.-+++..|+.|..
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 8999999999999999999999998887654
No 333
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.40 E-value=5.5 Score=42.87 Aligned_cols=154 Identities=16% Similarity=0.059 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----C------------
Q 003991 463 GESVEAIQDLSKALEF------------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-----D------------ 513 (781)
Q Consensus 463 g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~------------ 513 (781)
..|++|...|.-+... .|.+.+.+..++.+...+|+.+-|.....+++=. .
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4567777777766554 3445667777777777777777777777776521 1
Q ss_pred ----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHH-HcCCHHHHHHHHHHHH-----h
Q 003991 514 ----KENKS---AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-FLEAWGHLTQFYQ-DLANSEKALECLQQVL-----Y 579 (781)
Q Consensus 514 ----p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al-----~ 579 (781)
|.+-. +++..-..+.+.|-+..|.+++.-.+.++|. +|.+...+..+|. +..+|.=-+..++..- .
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 11111 1122233344556666666666666666665 5544444444332 3445554455444431 2
Q ss_pred hCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHhhccCCC
Q 003991 580 IDKRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPS 617 (781)
Q Consensus 580 ~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 617 (781)
.-|+.+ .-..+|..|..... -+.|...+.+|+...|.
T Consensus 412 ~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 223221 12233444444333 34555666666665553
No 334
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.36 E-value=1.3 Score=41.06 Aligned_cols=99 Identities=13% Similarity=-0.014 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 003991 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (781)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 662 (781)
.++..+|..|.+.|+.+.|++.|.++...... ..+.++.+..+....|++.....+..++-.+-.. ...|-.....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 45666777777777777777777776654332 1355666677777777777777777777655332 2224344444
Q ss_pred HHHHHHHHHHHhchhhHHHHHhh
Q 003991 663 FYQKEIALYTASKINSEFCWFDI 685 (781)
Q Consensus 663 ~~~~~~~~~~~~~~~~A~~~~~~ 685 (781)
....|..+...++|..|...|-.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHc
Confidence 44556666667777777777643
No 335
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.34 E-value=0.8 Score=53.93 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=91.1
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAIS------IFDQIL-KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS------- 444 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 444 (781)
....-....|......|.+.+|.+ ++.... ...|.....+..++.++...|++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 345566777888888888888877 444222 346777888888999999999999888887776543
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003991 445 -NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (781)
Q Consensus 445 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 512 (781)
.|+....+.+++......++...|+..+.++..+ .|.-.....+++.++...++++.|+.+.+.|...
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2334456667777777777777777777776654 2333445556666666667777777777766653
No 336
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.17 E-value=3.8 Score=44.47 Aligned_cols=17 Identities=24% Similarity=0.092 Sum_probs=6.8
Q ss_pred HHHHHHcCCHHHHHHHH
Q 003991 456 GQARAALGESVEAIQDL 472 (781)
Q Consensus 456 a~~~~~~g~~~~A~~~~ 472 (781)
|.++...|++.+|.+.|
T Consensus 639 A~~~Ay~gKF~EAAklF 655 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLF 655 (1081)
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 33333344444444433
No 337
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.14 E-value=1.4 Score=40.76 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQV 577 (781)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (781)
++..+|..|.+.|+.++|++.|.++.+..... ...+..+..+.+..+++..+..++.++
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444555555555555555555444432211 333444444444444554444444444
No 338
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=12 Score=40.50 Aligned_cols=155 Identities=16% Similarity=0.057 Sum_probs=87.6
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C-----------
Q 003991 394 EGKYASAISIFDQILKE------------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-----N----------- 445 (781)
Q Consensus 394 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~----------- 445 (781)
...|++|...|.-+... .|.+...++.++.+...+|+.+.|....++++=. .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34566666666655543 4667788888899998898888877777766521 1
Q ss_pred -----CCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HhcCCHHHHHHHHHHHH-----
Q 003991 446 -----PSAGE---AWKRRGQARAALGESVEAIQDLSKALEFEPN-SADILHERGIVN-FKFKDFNAAVEDLSACV----- 510 (781)
Q Consensus 446 -----p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~a~----- 510 (781)
|.+-. +++.....+.+.|-+..|.++++-.+.++|. ++-+...+..+| ++..+|+--++.++..-
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 11211 2333344455567777777777777777776 554444333333 34445555555554432
Q ss_pred HhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCcc
Q 003991 511 KLDKENKSAYTYLGLALSSIGE---YKKAEEAHLKAIQLDRN 549 (781)
Q Consensus 511 ~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 549 (781)
..-|+.+. -..+|..|..... -..|...+.+|+...|.
T Consensus 411 ~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 SQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 22233222 2334555554444 45566666666666553
No 339
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.82 E-value=0.25 Score=48.25 Aligned_cols=84 Identities=11% Similarity=-0.015 Sum_probs=64.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL-RASCYHAIGEYREAIKDYDAALDLELDS 652 (781)
Q Consensus 574 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (781)
|.++-...|+++..|...+....+.|.|.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++.++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334444567778888877777777788888888888888888888888876 5556677788888888888888888888
Q ss_pred HHHHH
Q 003991 653 MEKFV 657 (781)
Q Consensus 653 ~~~~~ 657 (781)
|..|.
T Consensus 176 p~iw~ 180 (435)
T COG5191 176 PRIWI 180 (435)
T ss_pred chHHH
Confidence 88775
No 340
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.78 E-value=1.6 Score=47.21 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=73.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcccc-------hhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 003991 42 ELAKLCSLRNWSKAIRILDSLLAQSYE-------IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (781)
Q Consensus 42 ~~~~~~~~g~~~~A~~~y~~ai~~~~~-------~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 114 (781)
...+.|+..+|..++++|...+.-.+. ....-+.+.||+.+.+++.|++.+.+|=+.||..+---+..-.+..
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 345789999999999999998765411 1225578889999999999999999999999998888888888888
Q ss_pred HcCCHHHHHHHHHHHH
Q 003991 115 ALGRKEEALSVWEKGY 130 (781)
Q Consensus 115 ~~g~~~~A~~~~~~al 130 (781)
.-|+-++|+.+..+..
T Consensus 440 ~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIK 455 (872)
T ss_pred HhcchHHHHHHHHHHH
Confidence 9999999998887774
No 341
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.74 E-value=0.22 Score=32.24 Aligned_cols=28 Identities=29% Similarity=0.249 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 104 QAYILKGCAFSALGRKEEALSVWEKGYE 131 (781)
Q Consensus 104 ~a~~~lg~~~~~~g~~~~A~~~~~~al~ 131 (781)
+.|.++|.+-+..++|++|+..|+++|+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5688999999999999999999999954
No 342
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.71 E-value=11 Score=36.93 Aligned_cols=265 Identities=13% Similarity=0.078 Sum_probs=155.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHccCHHHHHHHHHH---HHHhC--CCcHHH
Q 003991 385 LSRGIAQVNEGKYASAISIFDQILKEDP--------MYPEALIGRGTARAFQRELEAAISDFTE---AIQSN--PSAGEA 451 (781)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~~--p~~~~~ 451 (781)
+.+|......+++++|+..|.+++.... +...+...++.+|...|++..-.+.... +.... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 5678888899999999999999986521 1235678899999999987654443332 22211 222222
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHH
Q 003991 452 WKRRGQAR-AALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL------DKENKS 518 (781)
Q Consensus 452 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~p~~~~ 518 (781)
...+-..+ .....++.-+..+...++...... ..-..+..+++..|.|.+|+......+.. .+.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22222111 122345555666665555433221 23345677888999999999887766542 233456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcccHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHH-
Q 003991 519 AYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDK---RFSKA- 587 (781)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~- 587 (781)
++..-..+|....+..++...+..|-.. .|....+. ..-|..+....+|.-|..+|-++++-.. .+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 6777788888888888877777665433 23222222 2335556677889999999988876543 23333
Q ss_pred ----HHHHHHHHHHCCCHHHHHHHH--HHhhc-cCCCCHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhhccC
Q 003991 588 ----YHLRGLLLHGLGQHKKAIKDL--SSGLG-IDPSNIECLYLRASCYH--AIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 588 ----~~~la~~~~~~g~~~~A~~~~--~~al~-~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~ 651 (781)
|..+..+... ..++-...+ ...++ .+....++....+..+. .+.+|..|+..|..-+..+|-
T Consensus 247 ~sLkYmlLSkIMlN--~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 247 VSLKYMLLSKIMLN--RREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHHHh--hHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 2333433333 333322222 22233 23334566666666664 345788888888877766653
No 343
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.62 E-value=16 Score=38.86 Aligned_cols=95 Identities=13% Similarity=-0.069 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (781)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (781)
+...+..+-.++.....+.-....+.+++... .+..+++.++.+|... ..++-....++.++.+-++...-..++..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 33444444444444444444555555555543 3344555666666655 445555556666666555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003991 494 FKFKDFNAAVEDLSACVK 511 (781)
Q Consensus 494 ~~~~~~~~A~~~~~~a~~ 511 (781)
.. ++-+.+..+|.+++.
T Consensus 143 Ek-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 143 EK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HH-hchhhHHHHHHHHHH
Confidence 44 555566666666553
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.49 E-value=4.9 Score=43.28 Aligned_cols=158 Identities=14% Similarity=0.040 Sum_probs=86.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 003991 389 IAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (781)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 467 (781)
......++++++....... +.-|.- ..-....+..+..+|..+.|+... .+++..+. +..+.|+.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFe---LAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFE---LALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHH---HHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhH---HHHhcCCHHH
Confidence 3455689999987777521 222322 333556667777788777777653 23444443 3457788888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003991 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547 (781)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (781)
|.+..++ .+++..|..+|......|+++-|.++|+++-. +..+..+|...|+.+.-.+....+....
T Consensus 337 A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7765432 23677888888888888888888888887532 2445666777777665555555544332
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 548 RNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (781)
Q Consensus 548 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (781)
..+ ..-.+++..|+.++.+..+.+
T Consensus 404 ~~n-----~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 DIN-----IAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HH-----HHHHHHHHHT-HHHHHHHHHH
T ss_pred CHH-----HHHHHHHHcCCHHHHHHHHHH
Confidence 211 112234445666666655544
No 345
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.48 E-value=2 Score=41.10 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (781)
..+.+.+|.+..+.|++++|..+|.+++...
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4567778888888888888888888887653
No 346
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.30 E-value=1.4 Score=52.01 Aligned_cols=164 Identities=21% Similarity=0.245 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------Ccc
Q 003991 485 ILHERGIVNFKFKDFNAAVE------DLSAC-VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRN 549 (781)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~------~~~~a-~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~ 549 (781)
-....|......+.+.+|.+ .+... -.+.|.....+..++.++...|++++|+..-.++.-+ .|+
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34556666777788887777 44422 2346777888999999999999999999988877543 345
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC----
Q 003991 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYI--------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---- 617 (781)
Q Consensus 550 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 617 (781)
....+.+++...+..++...|...+.++..+ .|.-.....+++.++...++++.|+++.+.|......
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 5778889998899999999999999888754 3455556678888888999999999999999875321
Q ss_pred ----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 618 ----NIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 618 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
....+..+++.+..++++..|....+....+
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 3456677788888888888888777766554
No 347
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=14 Score=37.20 Aligned_cols=267 Identities=14% Similarity=0.082 Sum_probs=165.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCc--H
Q 003991 385 LSRGIAQVNEGKYASAISIFDQILKE--DPMY--------PEALIGRGTARAFQRELEAAISDFTEAIQ---SNPSA--G 449 (781)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~--~ 449 (781)
+..+.......++++++..|..++.. .|.+ ......+|..+...|+.++-.......-. .-+.. .
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 56667777788889999999998874 1221 24567899999999998876655544322 11111 1
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CC--CC
Q 003991 450 EAWKRRGQARA-ALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL----DK--EN 516 (781)
Q Consensus 450 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~p--~~ 516 (781)
.....+-.... .-+..+.-+..+..+++...... ..-..+..+|+..++|.+|+......++- +. .-
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 12222222222 22344555566666665433221 23345778899999999999887776543 22 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHH
Q 003991 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFL--EAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSK 586 (781)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~ 586 (781)
.+++..-..+|+...+..+|...+..|-... |... ..-..=|.++....+|.-|..+|=++++-.. ++..
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~ 247 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK 247 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence 4556667788888888888888887765432 2211 1222335566667899999999999886533 2233
Q ss_pred H-----HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhhccC
Q 003991 587 A-----YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA--IGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 587 ~-----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~ 651 (781)
+ |..+..+....-+--.++-.-+.+++....+..+....|..+.. +.+|+.|+..|..-+..+|-
T Consensus 248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 3 33334443333333334444455666666678888888888754 45789999999988887764
No 348
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.21 E-value=3.8 Score=35.19 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991 451 AWKRRGQARAALG---ESVEAIQDLSKALE-FEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519 (781)
Q Consensus 451 ~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 519 (781)
..+++++++.... +..+.+.+++..++ -.|. .-+..+.++.-+++.++|+.++.+.+..++..|++..+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444444444332 23344455555553 2222 13344455555555555555555555555555555443
No 349
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.11 E-value=0.33 Score=32.17 Aligned_cols=30 Identities=37% Similarity=0.347 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 103 LQAYILKGCAFSALGRKEEALSVWEKGYEH 132 (781)
Q Consensus 103 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 132 (781)
+.++..+|.+|..+|++++|+..+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788999999999999999999999543
No 350
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.01 E-value=1.6 Score=47.19 Aligned_cols=93 Identities=11% Similarity=-0.064 Sum_probs=53.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (781)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (781)
+.+-|.-.++..+|..++++|...+...|.+ ......++.||..+.+.+.|.+++++|-+.+|.++-....+..
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3444555555666666666666666554433 2344555566666666666666666666666666555555555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 003991 492 VNFKFKDFNAAVEDLSACV 510 (781)
Q Consensus 492 ~~~~~~~~~~A~~~~~~a~ 510 (781)
+....+.-++|+.+.....
T Consensus 437 ~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHhcchHHHHHHHHHHH
Confidence 5555666666665555543
No 351
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.00 E-value=0.53 Score=38.35 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=34.9
Q ss_pred HHhhhCHHHHHHHHHHHHhcCC---------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 003991 79 YSQLELHKHVIRDCDKALQLDP---------TLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (781)
Q Consensus 79 ~~~~~~~~~A~~~~~~al~~~p---------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 136 (781)
.++.|||.+|++.+.+.++.-. ....+.+.+|.++...|++++|+..++.|+.++.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3444555555444444433321 123466777888888888888888888886655433
No 352
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.94 E-value=0.36 Score=47.14 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Q 003991 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY-LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555 (781)
Q Consensus 479 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (781)
.|+++..|...+......+-+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++..+|+.+..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34444444444444444444444444444444445544444443 233334444455555555555555554444443
No 353
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=6.2 Score=40.77 Aligned_cols=170 Identities=19% Similarity=0.167 Sum_probs=103.6
Q ss_pred HHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhCCCcHHHHHH
Q 003991 388 GIAQVNEGKYA-SAISIFDQILKEDPMYPEALIGRGTARAFQR------------ELEAAISDFTEAIQSNPSAGEAWKR 454 (781)
Q Consensus 388 a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~ 454 (781)
-......|.++ +++..-.+.++.+|+...+|...-.++...- -.++-+.+...+++.+|+...+|+.
T Consensus 35 i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h 114 (421)
T KOG0529|consen 35 IQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH 114 (421)
T ss_pred HHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH
Confidence 33344556554 6788888888999998888766555443321 2344556666677777777777777
Q ss_pred HHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 455 RGQARAALGE--SVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (781)
Q Consensus 455 la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 528 (781)
+..++.+.+. +..-+...+++++.+|.+..+|...=.+.... ....+=+++..+++..++.+..+|.....++.
T Consensus 115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 7777766543 56667777777777777666554443333322 22455566677777777777777766665554
Q ss_pred H------cCC------HHHHHHHHHHHHhhCcccHHHHHHH
Q 003991 529 S------IGE------YKKAEEAHLKAIQLDRNFLEAWGHL 557 (781)
Q Consensus 529 ~------~g~------~~~A~~~~~~al~~~~~~~~~~~~l 557 (781)
. .|. ...-++....|+-.+|++..+|+..
T Consensus 195 ~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 195 TLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 2 221 2233444555566667776666663
No 354
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=16 Score=37.66 Aligned_cols=30 Identities=13% Similarity=0.012 Sum_probs=14.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (781)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (781)
.+.+|.+..-+++|..|.++|-+|+...|.
T Consensus 250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 334455544455555555555555554444
No 355
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.46 E-value=0.44 Score=31.56 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 620 ECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
.++.++|.+|..+|++++|..++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467788899999999999999988888763
No 356
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=6.1 Score=40.83 Aligned_cols=131 Identities=21% Similarity=0.207 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--
Q 003991 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALG------------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK-- 497 (781)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-- 497 (781)
.++++.-.+.+..+|+...+|...-.++...- -.++-+.+...+++.+|++..+|+....++.+.+
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 45677777777778877777665544443221 2334445555555666666666666665555443
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 003991 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG----EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562 (781)
Q Consensus 498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 562 (781)
++..-+...+++++.+|.+..+|...=.+..... ...+-+++..+++..++.+..+|.....++.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 2455555566666666655555544333332211 1334455555555555555555555554443
No 357
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.16 E-value=0.32 Score=28.47 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH
Q 003991 104 QAYILKGCAFSALGRKEEALSVWE 127 (781)
Q Consensus 104 ~a~~~lg~~~~~~g~~~~A~~~~~ 127 (781)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467778888888888888887664
No 358
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.53 E-value=1.3 Score=36.15 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=46.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc----c-c-----hhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCC
Q 003991 43 LAKLCSLRNWSKAIRILDSLLAQS----Y-E-----IQDICNRAFCYSQLELHKHVIRDCDKALQLDP 100 (781)
Q Consensus 43 ~~~~~~~g~~~~A~~~y~~ai~~~----~-~-----~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p 100 (781)
....++.|||..|++.+.+..... . . .....++|......|++++|+..+++||.+-.
T Consensus 5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 456678999999988888877654 1 1 12266899999999999999999999998753
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.13 E-value=3.2 Score=31.88 Aligned_cols=62 Identities=6% Similarity=0.041 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHccCHHHHHHHHHHHHH
Q 003991 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI---GRGTARAFQRELEAAISDFTEAIQ 443 (781)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~ 443 (781)
...+..|.-++...+.++|+..+.++++..++.+.-+. .+..+|...|+|.+.+.+..+-+.
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888999999999999999998877665444 455677788888888877655444
No 360
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.43 E-value=33 Score=36.68 Aligned_cols=99 Identities=10% Similarity=-0.074 Sum_probs=69.6
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (781)
.|.+-..+..+-..+-.+..++-...++.+++... ++..+++.++.+|... ..+.-....++.++.+-++...-..++
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 44444444444445545555566666777777655 4567888888888888 566677788888888888777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 003991 457 QARAALGESVEAIQDLSKALEF 478 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~ 478 (781)
..|.. ++...+..+|.+++..
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH
Confidence 77766 7888888888888754
No 361
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.00 E-value=1.4 Score=28.20 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHH--HHHHHhhccC
Q 003991 620 ECLYLRASCYHAIGEYREAIKD--YDAALDLELD 651 (781)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 651 (781)
+.++.+|..+...|++++|+.. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566667777777777777777 3366555554
No 362
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=88.80 E-value=28 Score=35.10 Aligned_cols=273 Identities=14% Similarity=0.088 Sum_probs=163.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCC--H
Q 003991 419 IGRGTARAFQRELEAAISDFTEAIQS--NPSA--------GEAWKRRGQARAALGESVEAIQDLSKALE---FEPNS--A 483 (781)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~--~ 483 (781)
+..+.......+.++++..+..++.. .|.+ ......++..+...|+..+-.......-. .-+.. .
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 45556666677788899999888874 2222 23677899999999998776555544322 22111 1
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----C--ccc
Q 003991 484 DILHERGIVNF-KFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQL----D--RNF 550 (781)
Q Consensus 484 ~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--~~~ 550 (781)
.+...+..... ..+..+.-+..+..+++...... ..-..+...|...++|.+|+......+.- + +.-
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 22222222222 22344455566666665433222 22345788999999999999888776543 2 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHhhccCC---CCHH
Q 003991 551 LEAWGHLTQFYQDLANSEKALECLQQVLYI-----DKRFSKA--YHLRGLLLHGLGQHKKAIKDLSSGLGIDP---SNIE 620 (781)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~ 620 (781)
.+++..-..+|+...+..+|...+..+-.. .|....+ -..=|.++....+|..|..+|-++++-.. ++..
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~ 247 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK 247 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence 455666677888888888888888776533 2211111 22235666667899999999999987532 2233
Q ss_pred H---HHHHHHHHHHhCCHHHHHHH--HHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHH
Q 003991 621 C---LYLRASCYHAIGEYREAIKD--YDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE 695 (781)
Q Consensus 621 ~---~~~la~~~~~~g~~~~A~~~--~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 695 (781)
+ +-.+-.|-..++..++--.. -+.+++....+.++....+.++-++ .+..|+.|+..|..-+.-+|--+.
T Consensus 248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nR-----SLkdF~~AL~~yk~eL~~D~ivr~ 322 (411)
T KOG1463|consen 248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNR-----SLKDFEKALADYKKELAEDPIVRS 322 (411)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCC-----cHHHHHHHHHHhHHHHhcChHHHH
Confidence 3 33344444556666654444 3455665555555444444433332 456788888888888877775554
Q ss_pred H
Q 003991 696 Y 696 (781)
Q Consensus 696 ~ 696 (781)
.
T Consensus 323 H 323 (411)
T KOG1463|consen 323 H 323 (411)
T ss_pred H
Confidence 4
No 363
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=88.60 E-value=28 Score=34.81 Aligned_cols=54 Identities=15% Similarity=0.035 Sum_probs=35.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003991 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443 (781)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (781)
-....+..+..+-++...++++++|..+.++..++.-- ..-..+|...++++++
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALk 244 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALK 244 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHH
Confidence 34455666777777777788888888888777776532 2234556666666655
No 364
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.51 E-value=2.6 Score=41.19 Aligned_cols=66 Identities=18% Similarity=0.099 Sum_probs=48.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (781)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (781)
++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|-+.-|++.++..++..|+++.+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 344456667777777777777777777777777777777777777777777777777777777654
No 365
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=88.24 E-value=4.6 Score=40.36 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHhcccchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCC---CchhHHHHHHHHHHHcCCHHHHHHHH
Q 003991 50 RNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDP---TLLQAYILKGCAFSALGRKEEALSVW 126 (781)
Q Consensus 50 g~~~~A~~~y~~ai~~~~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~ 126 (781)
-||..=..+|+-.....|+|..-.|||.+.-..--...++...+-... +| +|.-.|-.+|..+.++|+.++|...|
T Consensus 310 tDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~-~~~L~gy~~~h~~RadlL~rLgr~~eAr~ay 388 (415)
T COG4941 310 TDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLA-RPRLDGYHLYHAARADLLARLGRVEEARAAY 388 (415)
T ss_pred CChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhc-ccccccccccHHHHHHHHHHhCChHHHHHHH
Confidence 378877788887667779999999999998877767777776655444 43 45557778999999999999999999
Q ss_pred HHHHhhccCChHHHHHHHHHH
Q 003991 127 EKGYEHALHQSADLKQFLELE 147 (781)
Q Consensus 127 ~~al~~~~~~~~~~~~~~~~~ 147 (781)
.+|+++.++..+......+++
T Consensus 389 drAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 389 DRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred HHHHHhcCChHHHHHHHHHHH
Confidence 999999988877655444443
No 366
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.24 E-value=5.5 Score=38.99 Aligned_cols=75 Identities=23% Similarity=0.174 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 003991 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (781)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (781)
...++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.+...++..|+++.+-...+.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 334455567778888888888888888888888888888888888888888888888888888887765554443
No 367
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.01 E-value=5.4 Score=37.18 Aligned_cols=72 Identities=21% Similarity=0.168 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC----CHHHHHHHHHHHHHhCCHHHHH
Q 003991 567 SEKALECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----NIECLYLRASCYHAIGEYREAI 639 (781)
Q Consensus 567 ~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 639 (781)
-++|...|-++-.... +.++..+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++..+|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3456555555432211 45677777776665 45677777777777776433 4777778888888888777764
No 368
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.72 E-value=45 Score=36.10 Aligned_cols=157 Identities=17% Similarity=0.080 Sum_probs=76.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991 458 ARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (781)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 536 (781)
.....++++++....... ++-|.- ......++..+.+.|-++.|+...+ ++...+. +..+.|+.+.|
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFe---LAl~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFE---LALQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHH---HHHHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhH---HHHhcCCHHHH
Confidence 344567777766666411 111211 3345555666666676666665442 2333333 34566777776
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (781)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (781)
.+...+ .+++..|..||......|+++-|.++|+++-. +..+..+|.-.|+.+.=.+....+.....
T Consensus 338 ~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 338 LEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 655432 23556777777777777777777777766421 34455556666666544444444433221
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991 617 SNIECLYLRASCYHAIGEYREAIKDYDA 644 (781)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (781)
+...-.++..+|+.++.++.+.+
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 12222344456666666665544
No 369
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=38 Score=35.15 Aligned_cols=132 Identities=13% Similarity=0.014 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----C-CcH
Q 003991 385 LSRGIAQVNEGKYASAISIFDQILKEDP---------MYPEALIGRGTARAFQRELEAAISDFTEAIQSN-----P-SAG 449 (781)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p-~~~ 449 (781)
+.....++.+.++.+|..+-+..+..-. -.+..|+.+..+|...|+...-...+...+... . ...
T Consensus 130 lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qa 209 (493)
T KOG2581|consen 130 LLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQA 209 (493)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHH
Confidence 3344455667888888887776654211 124567777777777887666555555544321 1 113
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 003991 450 EAWKRRGQARAALGESVEAIQDLSKALEF--EP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (781)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~ 516 (781)
.....+-+.|...+.|+.|-....+..-- .. .....++.+|.+..-+++|..|.+++-.|+...|..
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 34455666777777788877776665411 11 114456677888888888888888888888888864
No 370
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.52 E-value=4.7 Score=47.45 Aligned_cols=115 Identities=20% Similarity=0.111 Sum_probs=82.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHC----C---CHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 003991 559 QFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGL----G---QHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (781)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~~ 628 (781)
.++...+.|+.|+..|++.-...|.. .++.+..|..+..+ | .+++|+..|++.- -.|.-|--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHH
Confidence 45556677888888888887777754 34566666665432 2 4677777777653 356667778889999
Q ss_pred HHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHh
Q 003991 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTAS 674 (781)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 674 (781)
|.++|++++-+++|.-|++..|++|..-...--.-|.+-.+.+...
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR 607 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876665555555555554433
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.52 E-value=3.4 Score=31.76 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccchhh----hhhHHHHHHhhhCHHHHHHHHHHHH
Q 003991 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKAL 96 (781)
Q Consensus 41 ~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~----~~~rA~~~~~~~~~~~A~~~~~~al 96 (781)
.+|-++|.+.+.++|+..++++++..+++.. +.-.+.+|...|+|++++.....=+
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777777633333 3345556777777777766554433
No 372
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.22 E-value=3.1 Score=42.73 Aligned_cols=84 Identities=12% Similarity=0.086 Sum_probs=42.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccc------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003991 523 LGLALSSIGEYKKAEEAHLKAIQLDRNF------------------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (781)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 584 (781)
-|..++++++|..|.--|..++++..+- ..+-..+..+|...++.+-|+....+.+.++|.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 3666777777777777777777653211 0111234444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHCCCHHHHHH
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIK 606 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~ 606 (781)
..-+...|.++..+.+|.+|-+
T Consensus 262 frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.48 E-value=0.93 Score=26.50 Aligned_cols=23 Identities=22% Similarity=0.057 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Q 003991 621 CLYLRASCYHAIGEYREAIKDYD 643 (781)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~ 643 (781)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555555555555555555443
No 374
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.43 E-value=2.8 Score=26.85 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH--HHHHhCC
Q 003991 383 FRLSRGIAQVNEGKYASAISIFD--QILKEDP 412 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~--~~l~~~p 412 (781)
.++.+|..++.+|++++|+..|+ -+...++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 44555555555566666655532 4444443
No 375
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=86.07 E-value=69 Score=36.60 Aligned_cols=247 Identities=9% Similarity=-0.024 Sum_probs=155.9
Q ss_pred hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCCcHH
Q 003991 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA---FQRELEAAISDFTEAIQSNPSAGE 450 (781)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~ 450 (781)
....+.+......+-..+...|++++-...-.++-++.|..+..|..-..-.. ..++-.++...|++++.. -....
T Consensus 106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y~~v~ 184 (881)
T KOG0128|consen 106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-YNSVP 184 (881)
T ss_pred hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-cccch
Confidence 33455566677777888889999988888888888888888888765544332 236777888888888863 34555
Q ss_pred HHHHHHHHHHHc-------CCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 003991 451 AWKRRGQARAAL-------GESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (781)
Q Consensus 451 ~~~~la~~~~~~-------g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~ 516 (781)
.|...+...... ++++.-...|.+++..-... ...+..+-..|...-..++-+.++...+... -+
T Consensus 185 iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D 263 (881)
T KOG0128|consen 185 IWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LD 263 (881)
T ss_pred HHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-ch
Confidence 666666665443 45677777788877643221 3344445555555555566677777666554 22
Q ss_pred HHH----HHHHH--H-HHHHcCCHHHHHHHHHH-------HHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991 517 KSA----YTYLG--L-ALSSIGEYKKAEEAHLK-------AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (781)
Q Consensus 517 ~~~----~~~la--~-~~~~~g~~~~A~~~~~~-------al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 582 (781)
..+ |.... . ......+++.|...+.+ .++..+.....|..+.......|+...-...+++++...+
T Consensus 264 ~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~ 343 (881)
T KOG0128|consen 264 EDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMV 343 (881)
T ss_pred hhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcc
Confidence 211 11111 1 11234455555554333 3333444456667777777788888888888888888888
Q ss_pred CCHHHHHHHHHHH-HHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991 583 RFSKAYHLRGLLL-HGLGQHKKAIKDLSSGLGIDPSNIECL 622 (781)
Q Consensus 583 ~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (781)
.+...|...+... ..++-.+.+...+.+++...|-....|
T Consensus 344 ~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~ 384 (881)
T KOG0128|consen 344 LDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLW 384 (881)
T ss_pred ccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHH
Confidence 8888888777654 344555666777777777776644443
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.90 E-value=3.4 Score=40.42 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=53.4
Q ss_pred hhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (781)
Q Consensus 72 ~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 129 (781)
+...|..|...|.+.+|+..|++++.+||-+-..+..+-.++..+|+-=.|.+.|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4456678889999999999999999999999999999999999999999999999887
No 377
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.10 E-value=8.5 Score=38.25 Aligned_cols=64 Identities=20% Similarity=0.146 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF 478 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 478 (781)
..++..++..+...|+++.+...+++.+..+|.+...|..+...|...|+...|+..|+++-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4566667777777777777777777777777777777777777777777777777777766553
No 378
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.04 E-value=1.7 Score=28.24 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 620 ECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
+++..+|.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467778888888888888888888888764
No 379
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.96 E-value=4.8 Score=39.93 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
..++..++..+...|+++.+...+++.+..+|-+...|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4456666777777777777777777777777777777777777777777777777777766553
No 380
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.69 E-value=2.9 Score=43.89 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=45.6
Q ss_pred hHHHHHHhhhCHHHHHHHHHHHHhcC---------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 74 NRAFCYSQLELHKHVIRDCDKALQLD---------PTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (781)
Q Consensus 74 ~rA~~~~~~~~~~~A~~~~~~al~~~---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 130 (781)
.+..++.-+|||..|++..+- |+++ +-++..+|..|-+|+.+++|.+|++.|..+|
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567778999999997654 4443 3466789999999999999999999999995
No 381
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=84.06 E-value=51 Score=33.35 Aligned_cols=185 Identities=13% Similarity=0.010 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (781)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (781)
-.++|+..-.-...+.|..++++-.++.+++...+...=...=-..+-+...+... ...+-.+++...+.++
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~l--------W~r~lI~eg~all~rA 282 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSL--------WDRALIDEGLALLDRA 282 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhh--------hhHHHHHHHHHHHHHH
Confidence 35788888888888999999988888777655332110000000000111112222 2233356677777777
Q ss_pred HhhCc-ccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--C
Q 003991 544 IQLDR-NFLEAWGHLTQFYQD-----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--D 615 (781)
Q Consensus 544 l~~~~-~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~ 615 (781)
+.... .-....-.++.++.. .-++..-..+|.-.....|+ +.+-.+.+.......-.+.++...+..... -
T Consensus 283 ~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L 361 (415)
T COG4941 283 LASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRL 361 (415)
T ss_pred HHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhccccc
Confidence 76542 222222233333332 34666666777776666664 556666777776666677777777765543 2
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991 616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (781)
Q Consensus 616 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (781)
......+-..|.++.++|+.++|...|++++.+.++..+..+
T Consensus 362 ~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 362 DGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred ccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 233456777899999999999999999999999988876433
No 382
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.86 E-value=13 Score=34.79 Aligned_cols=53 Identities=25% Similarity=0.224 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHcCCHHHH
Q 003991 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN----FLEAWGHLTQFYQDLANSEKA 570 (781)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A 570 (781)
++..+.+|..|. ..+.++++..+.+++++.+. +++++..|+.++...|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 334444443333 23444444444444443222 244444444444444444443
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.46 E-value=21 Score=37.80 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHH--HHHHHHHHccCHHHHHHHHHHHHHh
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--ALI--GRGTARAFQRELEAAISDFTEAIQS 444 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~--~la~~~~~~g~~~~A~~~~~~al~~ 444 (781)
.....+..++..++|..|...+..+...-|.... .+. ..|..++..-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4456788899999999999999999886343333 333 3455566788999999999988764
No 384
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=83.12 E-value=54 Score=32.93 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=80.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 003991 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500 (781)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 500 (781)
+-....+..+..+-++....+++++|....++..++.-- ..-..+|...++++++... ..+...+.....|...
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQH 263 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccch
Confidence 334444555666667777888999998888887776532 2346678888888876532 2222222222223222
Q ss_pred HHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHH
Q 003991 501 AAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECL 574 (781)
Q Consensus 501 ~A~~~~~~a~~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~ 574 (781)
+|.. ....+. .+...++.+..++|+..+|++.++...+-.|-. ..+.-++-..+....-|.+....+
T Consensus 264 da~~-------rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 264 EAQL-------RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred hhhh-------hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 111222 233457888888888888888888877766632 233444555555544444443333
No 385
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.59 E-value=4.6 Score=35.54 Aligned_cols=59 Identities=20% Similarity=0.108 Sum_probs=45.0
Q ss_pred HhcccchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHH
Q 003991 63 LAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (781)
Q Consensus 63 i~~~~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 121 (781)
+++-........+|...+..|+|.-|...++.++..+|++..+...++.++.++|.-.+
T Consensus 64 v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 64 VELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 34444445566788888999999999999999999999999999999999998886544
No 386
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=81.04 E-value=66 Score=34.65 Aligned_cols=168 Identities=15% Similarity=0.048 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Q 003991 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL----DKENKSAYTYLGLA 526 (781)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~la~~ 526 (781)
....+|++.+.+++|+.|...|+.+.+-..++ .+|..+|-++... |+..+...... ..+.+..+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~-----alsl~~~~~~~~~k~~~~~~~~~------ 277 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND-KAWKYLAGAQEMA-----ALSLLMQGQSISAKIRKDEIEPY------ 277 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHH-----HHHHHhcCCCCccccccccHHHH------
Confidence 34568888888888888888888877654333 2333333222111 01111000000 00011111
Q ss_pred HHHcCCHHHHHHHHHHHH----hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC-----CHHHHHHHHHHH
Q 003991 527 LSSIGEYKKAEEAHLKAI----QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKR-----FSKAYHLRGLLL 595 (781)
Q Consensus 527 ~~~~g~~~~A~~~~~~al----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~-----~~~~~~~la~~~ 595 (781)
++.|...|.++- .....-..+....+.++...+.+.+|...+-+.... ..+ ....+-..|.++
T Consensus 278 ------le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~ 351 (414)
T PF12739_consen 278 ------LENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY 351 (414)
T ss_pred ------HHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh
Confidence 233444444321 111122345555666666777776666655555433 211 222333444444
Q ss_pred HHCCCHHHHHHHHHHhhcc-CC--C------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991 596 HGLGQHKKAIKDLSSGLGI-DP--S------NIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (781)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~-~p--~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (781)
..+.. .| . .+.-+..-|.-|.+.|+...|..+|.+++....
T Consensus 352 --------------~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 352 --------------ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred --------------cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 11111 11 1 122334456778889999999999998887654
No 387
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.57 E-value=10 Score=39.08 Aligned_cols=86 Identities=13% Similarity=0.016 Sum_probs=65.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccchhh----hhhHHHHHHhhhCHHHHHHHHHHHHhc----C---C-CchhHHHHHHH
Q 003991 44 AKLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQL----D---P-TLLQAYILKGC 111 (781)
Q Consensus 44 ~~~~~~g~~~~A~~~y~~ai~~~~~~~~----~~~rA~~~~~~~~~~~A~~~~~~al~~----~---p-~~~~a~~~lg~ 111 (781)
..+...|+++.|+++|.++=.-+.+... +.|.-.+-+-+|+|.+....-.+|.+. . + -.++.....|.
T Consensus 158 dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agL 237 (466)
T KOG0686|consen 158 DHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGL 237 (466)
T ss_pred HHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHH
Confidence 3456799999999999997666532222 556666777789999999998888875 1 0 12447888899
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 003991 112 AFSALGRKEEALSVWEKG 129 (781)
Q Consensus 112 ~~~~~g~~~~A~~~~~~a 129 (781)
+.+.+++|..|.+.|-.+
T Consensus 238 a~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 238 ANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999999999999888777
No 388
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.63 E-value=8.2 Score=37.91 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003991 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (781)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 646 (781)
....+..|...|.+.+|+++.++++..+|-+...+..+-.++..+|+--.|++.|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33456667777888888888888888888777778888888888888777777776653
No 389
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=79.53 E-value=6.8 Score=39.53 Aligned_cols=62 Identities=19% Similarity=0.091 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (781)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (781)
|..+|.+|+.+.|.....++.+|.++...|+.-.|+-+|-+++......+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999987665568888888888877
No 390
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=79.30 E-value=7 Score=39.44 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 003991 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563 (781)
Q Consensus 502 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 563 (781)
|..+|.+|+.+.|.+...+..+|.++...|+.=.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997766667888888888776
No 391
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.18 E-value=1.4e+02 Score=35.16 Aligned_cols=58 Identities=19% Similarity=0.092 Sum_probs=38.7
Q ss_pred hhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchh----HHHHH-HHHHHHcCCHHHHHHHHHHH
Q 003991 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ----AYILK-GCAFSALGRKEEALSVWEKG 129 (781)
Q Consensus 72 ~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~----a~~~l-g~~~~~~g~~~~A~~~~~~a 129 (781)
+...-..+++...|++|+..++-...-+|.-.. ...+. |.-++.+|++++|+..|.++
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 344445666667777777777776665554322 11112 56688999999999999988
No 392
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=78.90 E-value=39 Score=33.05 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhc-----cCCCCHH---HHHHHHHHH-HHhCCHHHHHHHHHHHHhh
Q 003991 602 KKAIKDLSSGLG-----IDPSNIE---CLYLRASCY-HAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 602 ~~A~~~~~~al~-----~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~~ 648 (781)
+.|...|++|+. +.|.+|. ...+.+..| ..+|+.++|+...++++..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 566677777654 3566653 444555555 4589999999888877653
No 393
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.18 E-value=1.5e+02 Score=34.93 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccchhh--------hhhHHHHHHhhhCHHHHHHHHHHHHhcCCCch
Q 003991 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQD--------ICNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103 (781)
Q Consensus 39 ~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~--------~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~ 103 (781)
.+...-.+++...|+.|+..-+-... ++|.- +...|.-++.+|+|++|...+.+ ++.||..+
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~--~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~-~~~d~~~v 379 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDS--PNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEK-SEIDPRHV 379 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCC--CChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-hccChHHH
Confidence 55667778888889999885553333 33333 12336678899999999999988 55677444
No 394
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.18 E-value=56 Score=37.36 Aligned_cols=244 Identities=15% Similarity=0.018 Sum_probs=122.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHH
Q 003991 389 IAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSAGEAWKRRGQARAALGESV 466 (781)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~ 466 (781)
..+++..-|.-|+.+.+.- ..+++ -..+....|.-++..|++++|...|-+.+.. +|...- .-+.......
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi------~kfLdaq~Ik 414 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI------KKFLDAQRIK 414 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH------HHhcCHHHHH
Confidence 4456666666776655442 11221 1245556677777777788777777777653 222111 1122233344
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA--YTYLGLALSSIGEYKKAEEAHLKAI 544 (781)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~--~~~la~~~~~~g~~~~A~~~~~~al 544 (781)
+-..+++...+..-.+.+--..|-.+|.++++.++-.++.++ .+.-... .-..-.++.+.+-+++|.-.-.+.-
T Consensus 415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 444555555555444455555666777777776654444433 2210000 0011122223333333333222211
Q ss_pred hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-C-CCCHHH
Q 003991 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-D-PSNIEC 621 (781)
Q Consensus 545 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~ 621 (781)
. +. ..+-.++...++|++|+.++... .|.. .......|..+... ..++-...+-+.+.. . +.....
T Consensus 491 ~----he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~~~ 559 (933)
T KOG2114|consen 491 K----HE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKGKS 559 (933)
T ss_pred c----CH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCCch
Confidence 1 11 12334566788899999888753 2221 23455567777663 455555555444432 2 111111
Q ss_pred ----HHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 622 ----LYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 622 ----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
.-..-.+..-.+++..-..+++...+..|+.++
T Consensus 560 ~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 560 LSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred hhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 112233444567788877888878888887766
No 395
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.61 E-value=81 Score=31.08 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991 385 LSRGIAQVNEGKYASAISIFDQILK 409 (781)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~ 409 (781)
+....+++..|+..+|+.-++.=+.
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3445666667777777766665544
No 396
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.53 E-value=62 Score=31.90 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCH
Q 003991 568 EKALECLQQVLYIDKR------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEY 635 (781)
Q Consensus 568 ~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 635 (781)
...+..+.+++..... .......+|..|...|++++|+.+|+.+....... ..++..+..|+..+|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 3445555555443221 13345678888889999999999998886553322 35677788888888888
Q ss_pred HHHHHHHHHH
Q 003991 636 REAIKDYDAA 645 (781)
Q Consensus 636 ~~A~~~~~~a 645 (781)
+..+...-+.
T Consensus 235 ~~~l~~~leL 244 (247)
T PF11817_consen 235 EDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHH
Confidence 8777665444
No 397
>PF13041 PPR_2: PPR repeat family
Probab=76.37 E-value=8 Score=26.80 Aligned_cols=39 Identities=8% Similarity=0.214 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--cchhhhhh
Q 003991 36 AITARIELAKLCSLRNWSKAIRILDSLLAQS--YEIQDICN 74 (781)
Q Consensus 36 ~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~--~~~~~~~~ 74 (781)
....-..+..+++.|++++|.+.|++..+.. |+...|.-
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~ 43 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNI 43 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3344456677888888888888888888777 65555543
No 398
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.35 E-value=50 Score=32.24 Aligned_cols=28 Identities=11% Similarity=0.307 Sum_probs=13.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003991 385 LSRGIAQVNEGKYASAISIFDQILKEDP 412 (781)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p 412 (781)
..+|....+.|+|++.+.++.+++..+|
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 3444444444444444444444444433
No 399
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.92 E-value=1.5e+02 Score=33.93 Aligned_cols=124 Identities=10% Similarity=-0.101 Sum_probs=79.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991 557 LTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (781)
Q Consensus 557 la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (781)
++..-....+.+.|...+.+......-. ..++..+|.-....+...+|...+..+..... +.........+....
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHc
Confidence 3333445677788888888764444322 22344555444444336788888887654432 334445555566688
Q ss_pred CCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcC
Q 003991 633 GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD 688 (781)
Q Consensus 633 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 688 (781)
++++.+..++... |.... ......|-.|.++...|+-++|...|..+..
T Consensus 326 ~dw~~~~~~i~~L----~~~~~---~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 326 GDRRGLNTWLARL----PMEAK---EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cCHHHHHHHHHhc----CHhhc---cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9998877777764 22211 2445788888888889999999999988754
No 400
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.74 E-value=40 Score=33.08 Aligned_cols=87 Identities=14% Similarity=0.207 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHH
Q 003991 399 SAISIFDQILKEDPMYPEALIGRGTARAF--------QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL--GESVEA 468 (781)
Q Consensus 399 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A 468 (781)
.|++.-...+..+|....+|...-.+... ..-++.-+.++..+++-+|.+...|...-.++... .++..-
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence 56666666666676665555544443332 11123334444455555555554444444443332 334444
Q ss_pred HHHHHHHHHhCCCCHHH
Q 003991 469 IQDLSKALEFEPNSADI 485 (781)
Q Consensus 469 ~~~~~~al~~~p~~~~~ 485 (781)
+...++.++.++.+..+
T Consensus 130 l~itkklld~DsrNyH~ 146 (328)
T COG5536 130 LFITKKLLDSDSRNYHV 146 (328)
T ss_pred HHHHHHHhcccccccce
Confidence 44444444444444333
No 401
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.42 E-value=91 Score=31.03 Aligned_cols=80 Identities=18% Similarity=0.085 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 003991 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH--LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (781)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 592 (781)
.++..+..+|..+.+.|++.+|..+|-.. +++..... +-... .....|.....+...+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~---------------~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEW---------------STKGYPSEADLFIARA 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHH---------------HHHTSS--HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHH---------------HHhcCCcchhHHHHHH
Confidence 35677888888888888887777666432 11111111 11111 1123344445555554
Q ss_pred HH-HHHCCCHHHHHHHHHHhhcc
Q 003991 593 LL-LHGLGQHKKAIKDLSSGLGI 614 (781)
Q Consensus 593 ~~-~~~~g~~~~A~~~~~~al~~ 614 (781)
.+ |...++...|...+....+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 43 56678888777766555543
No 402
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.93 E-value=51 Score=37.64 Aligned_cols=207 Identities=14% Similarity=0.043 Sum_probs=120.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 003991 420 GRGTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (781)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 498 (781)
..-..+.+..-|+-|+...+.- ..+++ -..++...|..++..|++++|...|-+.+..-.. +.+. .-+....+
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-s~Vi----~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-SEVI----KKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-HHHH----HHhcCHHH
Confidence 3445666777788887765542 12222 2456777888999999999999999988865321 1111 12245555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 003991 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA--WGHLTQFYQDLANSEKALECLQQ 576 (781)
Q Consensus 499 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~ 576 (781)
..+-..+++...+..-.+.+-...|-.+|.++++.++-.++.++. +.-... .-..-.++.+.+-.++|...-.+
T Consensus 413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~----~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKC----DKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcC----CCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 666667777777766555555566788999999988765555442 211000 01111233333444444433332
Q ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 577 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
. ..+.. .+-.++...++|++|+.++... .|.. .......|..+... .+++-...+-+.+.
T Consensus 489 ~----~~he~---vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 489 F----KKHEW---VLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELIT 549 (933)
T ss_pred h----ccCHH---HHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHh
Confidence 2 11222 2344567889999999998753 3332 34566778777754 45555555555544
No 403
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.76 E-value=92 Score=30.79 Aligned_cols=273 Identities=12% Similarity=0.076 Sum_probs=151.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHHHHHH---HHHHHhC--CCCHHH
Q 003991 419 IGRGTARAFQRELEAAISDFTEAIQSNP--------SAGEAWKRRGQARAALGESVEAIQDL---SKALEFE--PNSADI 485 (781)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~---~~al~~~--p~~~~~ 485 (781)
..+|.-....+++++|+..|.+.+...- ........++.+|...|++..--+.. +.+.... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4567777888999999999999987522 12346778999999998875443333 2222221 112222
Q ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CcccHH
Q 003991 486 LHERGIVN-FKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRNFLE 552 (781)
Q Consensus 486 ~~~la~~~-~~~~~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~ 552 (781)
...+...+ .....++.-+..+...++...... ..-..+...+++.|.|.+|+......+.- .+.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22222211 123445555666665555433221 22345678889999999999887766542 233456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHhhccCC---CCHHHH
Q 003991 553 AWGHLTQFYQDLANSEKALECLQQVLYI-----DKRFSKAYH--LRGLLLHGLGQHKKAIKDLSSGLGIDP---SNIECL 622 (781)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~ 622 (781)
++..-..+|....+..++...+..+-.. .|....+.. .-|.....-.+|..|..+|-++++-.. .+..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 6677777888888888877777665432 332222222 225556677899999999999887533 233333
Q ss_pred HHHHHHH---HHhCCHHHHHHHHH--HHHh-hccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991 623 YLRASCY---HAIGEYREAIKDYD--AALD-LELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (781)
Q Consensus 623 ~~la~~~---~~~g~~~~A~~~~~--~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 696 (781)
..+-..+ ..++..++-...++ ..++ .+....++....+.+ .-...+..|+.|+..|..-+.-+|--+..
T Consensus 247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea-----~~NRsL~df~~aL~qY~~el~~D~~iRsH 321 (421)
T COG5159 247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEA-----FGNRSLKDFSDALAQYSDELHQDSFIRSH 321 (421)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHH-----hCCCcHhhHHHHHHHhhHHhccCHHHHHH
Confidence 3222221 22334444333322 1122 122222222211111 12234566778888887766666644443
No 404
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.58 E-value=6.8 Score=26.45 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 623 YLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 623 ~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
+.+|..|..+|+++.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5688888888888888888888884
No 405
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=74.54 E-value=7.2 Score=37.48 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=56.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc-cchhhhh------------hHHHHHHhhhCH-HHH-HHHHHHHHh-c-CCCchhHHH
Q 003991 45 KLCSLRNWSKAIRILDSLLAQS-YEIQDIC------------NRAFCYSQLELH-KHV-IRDCDKALQ-L-DPTLLQAYI 107 (781)
Q Consensus 45 ~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~------------~rA~~~~~~~~~-~~A-~~~~~~al~-~-~p~~~~a~~ 107 (781)
..|-.|+|+.|+++..-||+.+ +-|.-|. .-|...+..|+- +-. ...+..... . -|+-+.|-+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 4566689999999999999998 5554433 233333344431 111 111222211 1 155555444
Q ss_pred --HHHHHHH---------HcCCHHHHHHHHHHHHhhccCCh
Q 003991 108 --LKGCAFS---------ALGRKEEALSVWEKGYEHALHQS 137 (781)
Q Consensus 108 --~lg~~~~---------~~g~~~~A~~~~~~al~~~~~~~ 137 (781)
..|..++ ..++...|...+++|++++|...
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 4566553 45688899999999998887754
No 406
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=74.35 E-value=71 Score=29.30 Aligned_cols=187 Identities=15% Similarity=0.113 Sum_probs=119.3
Q ss_pred CCccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCcHH
Q 003991 377 KSISVDFRLSRGIAQVN-EGKYASAISIFDQILKEDPMYPEALIGRGTARAF-----QRELEAAISDFTEAIQSNPSAGE 450 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~ 450 (781)
....|+....+|..+-. +.+|++|..+|..--+.+ ..+...+.+|..++. .++...|+..+..+-. .+.+.
T Consensus 30 ~EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~ 106 (248)
T KOG4014|consen 30 EEKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQ 106 (248)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHH
Confidence 34557777778876654 578899988888765544 345666666665543 4578899999988876 45566
Q ss_pred HHHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003991 451 AWKRRGQARAAL-----G--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (781)
Q Consensus 451 ~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 523 (781)
+-..+|.++..- + +..+|..++.++-.+. +..+.+.|...++.-.+ + +....|..... ...
T Consensus 107 aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p-~~~ 174 (248)
T KOG4014|consen 107 ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKE--K-------FKTNAPGEGKP-LDR 174 (248)
T ss_pred HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccch--h-------hcccCCCCCCC-cch
Confidence 777777776542 2 3788999999987765 55566666666554321 1 12223311100 113
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 003991 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYI 580 (781)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 580 (781)
+..+.-..+.+.|..+-.++-++ .++.+..++.+.|.. -.+.++|..+-.++.++
T Consensus 175 ~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 175 AELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 44455567888898888888776 356666677776653 24567787777777654
No 407
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=73.58 E-value=1.2e+02 Score=32.61 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 003991 417 ALIGRGTARAFQRELEAAISDFTEAIQSN 445 (781)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (781)
....+|..++..++|+.|...|+.+.+..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 45679999999999999999999988744
No 408
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=73.57 E-value=14 Score=32.61 Aligned_cols=52 Identities=25% Similarity=0.227 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 431 (781)
..+..+..+...+..|++.-|..+.+.++..+|++..+...++.++..+|.-
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3677888899999999999999999999999999999999999888877643
No 409
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.58 E-value=32 Score=32.51 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=49.8
Q ss_pred HHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 594 LLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
-+.+.+...+|+...+.-++..|.+......+-.+|.-.|+|++|...++-+-++.|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 456677888888888888888888888888888888888888888888888888888764
No 410
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.81 E-value=1.1e+02 Score=30.42 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhC------CCc
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQRELE-AAISDFTEAIQSN------PSA 448 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~------p~~ 448 (781)
.+.++.-+..+++.|++..|.++..-.++. .+.+....-.++.+....+.-+ +-..+..++++.. -.+
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 556677777888888888777766555542 2334444456666665554322 2333334444322 235
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLS 473 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~ 473 (781)
+..+..+|..+...|++.+|..+|-
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHH
Confidence 6778888888888888877777664
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.77 E-value=72 Score=33.82 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=11.7
Q ss_pred HhCCHHHHHHHHHHHHhh
Q 003991 631 AIGEYREAIKDYDAALDL 648 (781)
Q Consensus 631 ~~g~~~~A~~~~~~al~~ 648 (781)
..|+|+.|+..+=+++++
T Consensus 253 ~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 253 AQGRYDDAVARLYRALEL 270 (379)
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 456677777666666654
No 412
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.40 E-value=1.1e+02 Score=30.23 Aligned_cols=178 Identities=19% Similarity=0.165 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--CCHHHHH
Q 003991 434 AISDFTEAIQSNPSAGEAWKRRGQARAA--------LGESVEAIQDLSKALEFEPNSADILHERGIVNFKF--KDFNAAV 503 (781)
Q Consensus 434 A~~~~~~al~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~ 503 (781)
|++.-...+..+|....+|...-.+... ..-.+.-+..+..+++-+|.+...|...-.++... .++..-+
T Consensus 51 aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl 130 (328)
T COG5536 51 ALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGREL 130 (328)
T ss_pred HHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhH
Confidence 4444445555555555555444333332 12245567778899999999999888887776655 6788888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHhhCcccHHHHHHH---HHHHHHcCC------HH
Q 003991 504 EDLSACVKLDKENKSAYTYLGLAL------SSIGEYKKAEEAHLKAIQLDRNFLEAWGHL---TQFYQDLAN------SE 568 (781)
Q Consensus 504 ~~~~~a~~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~~~~~~~~~~l---a~~~~~~g~------~~ 568 (781)
...++.+..++.+...|...-.+. .....+..-.++-..++..++.+..+|... -...+..|+ ++
T Consensus 131 ~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~ 210 (328)
T COG5536 131 FITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLE 210 (328)
T ss_pred HHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 899999999999987776554444 334445555777778888999999888776 333333444 44
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHh
Q 003991 569 KALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSG 611 (781)
Q Consensus 569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 611 (781)
+-+.+.-.++-.+|++..+|..+-.+... .-.+.+-++.+.+-
T Consensus 211 ~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~~~~e~v~~L~k~ 257 (328)
T COG5536 211 KELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVMIGEKVEDLGKY 257 (328)
T ss_pred HHHHHHHhhhhcCccccchhhHHHHHhccchHHHHHHHHHHHHHHhh
Confidence 55566666677789888887765444322 23455666666443
No 413
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.38 E-value=12 Score=22.58 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH
Q 003991 466 VEAIQDLSKALEFEPNSADILH 487 (781)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~ 487 (781)
+.+...|++++...|.++.+|.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHH
Confidence 3334444444444443333333
No 414
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.36 E-value=12 Score=22.56 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991 396 KYASAISIFDQILKEDPMYPEALIGRG 422 (781)
Q Consensus 396 ~~~~A~~~~~~~l~~~p~~~~~~~~la 422 (781)
+.+.|..+|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555554433
No 415
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.27 E-value=10 Score=25.55 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991 385 LSRGIAQVNEGKYASAISIFDQILK 409 (781)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~ 409 (781)
+.+|..|+..|+++.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566677777777777777777664
No 416
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=68.25 E-value=2.3e+02 Score=32.69 Aligned_cols=217 Identities=11% Similarity=0.039 Sum_probs=122.8
Q ss_pred HHhhccCCccHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------cCHHHHHHHHHH
Q 003991 371 TRISKSKSISVDFRLSRGIA---QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ-------RELEAAISDFTE 440 (781)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~---~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-------g~~~~A~~~~~~ 440 (781)
..+..-.|.++..|+.-..- .-..++-.++...|++++. +-+.+..|...+...... ++++.....|.+
T Consensus 137 ~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~r 215 (881)
T KOG0128|consen 137 LEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFER 215 (881)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHH
Confidence 33444456666665544332 2234677777888888875 334566666666655443 456777777877
Q ss_pred HHHhCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHH--H-HHHhcCCHHHHHHHH
Q 003991 441 AIQSNPS-------AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD----ILHERG--I-VNFKFKDFNAAVEDL 506 (781)
Q Consensus 441 al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la--~-~~~~~~~~~~A~~~~ 506 (781)
++..-.. ....+..+-..|...-..++-+.++...+... -+.+ -|.... . ......+++.|..-+
T Consensus 216 al~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l 294 (881)
T KOG0128|consen 216 ALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNL 294 (881)
T ss_pred HHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHH
Confidence 7764221 12344445555555555566777777776654 2221 111111 1 122344566665554
Q ss_pred HHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 003991 507 SACV-------KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ-DLANSEKALECLQQVL 578 (781)
Q Consensus 507 ~~a~-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 578 (781)
.+.+ ...+.....|..+-......|+.-.-...+++++.-.+.+...|...+...- .++-...+...+.+++
T Consensus 295 ~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~ 374 (881)
T KOG0128|consen 295 AKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAV 374 (881)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhh
Confidence 4333 2333334455566666677788777777788888777777777777765443 2344455566666777
Q ss_pred hhCCCCHHHHH
Q 003991 579 YIDKRFSKAYH 589 (781)
Q Consensus 579 ~~~~~~~~~~~ 589 (781)
..+|-...+|.
T Consensus 375 R~cp~tgdL~~ 385 (881)
T KOG0128|consen 375 RSCPWTGDLWK 385 (881)
T ss_pred cCCchHHHHHH
Confidence 76665444443
No 417
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.80 E-value=11 Score=39.66 Aligned_cols=61 Identities=20% Similarity=0.111 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991 553 AWGHLTQFYQDLANSEKALECLQQVL--------YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (781)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (781)
+...+.+++.-+|+|..|++.++..- ...+-+...++.+|.+|+-+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888899998888876531 11123345678888888888888888888887764
No 418
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=67.00 E-value=19 Score=30.63 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccchhhhh
Q 003991 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDIC 73 (781)
Q Consensus 41 ~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~~~ 73 (781)
..|..++..|++++|..+|-+||..+++|..+.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 445567889999999999999999998887643
No 419
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.64 E-value=39 Score=31.99 Aligned_cols=56 Identities=16% Similarity=0.084 Sum_probs=26.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 003991 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~ 516 (781)
+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|++
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 33444444444444444444444444444444444444444444444444444443
No 420
>PF12854 PPR_1: PPR repeat
Probab=66.44 E-value=16 Score=22.95 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991 619 IECLYLRASCYHAIGEYREAIKDYDA 644 (781)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (781)
...|..+-..|.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45555566666666666666665553
No 421
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=65.23 E-value=9.9 Score=38.51 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=30.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
++.+-.+.+.+..|+..-..++..++....+++.++..+....++++|.+.++.+....|++..
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 4444444444444444444444444444444555555555555555555555555555554443
No 422
>PF12854 PPR_1: PPR repeat
Probab=64.93 E-value=18 Score=22.68 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIKDLSS 610 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (781)
...|..+...+.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 55566666777777777777776654
No 423
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=63.84 E-value=1.2e+02 Score=27.88 Aligned_cols=49 Identities=16% Similarity=0.030 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhh
Q 003991 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI----GEYREAIKDYDAALDL 648 (781)
Q Consensus 598 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~ 648 (781)
..+.+.|.++--+|.+++ ++.+-.++.+.|..- .+-++|..+-.+|.++
T Consensus 181 ~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 345556666555555542 344444555544321 2355555555555554
No 424
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=63.03 E-value=2e+02 Score=30.28 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHH--HHHHHHHHccCHHHHHHHHHH
Q 003991 386 SRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALI--GRGTARAFQRELEAAISDFTE 440 (781)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~--~la~~~~~~g~~~~A~~~~~~ 440 (781)
.++..+++.++|..|...|++++...+.. ...+. ..|..++..-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35668999999999999999999875421 22333 344555678889999999985
No 425
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=62.52 E-value=51 Score=28.50 Aligned_cols=55 Identities=24% Similarity=0.172 Sum_probs=34.4
Q ss_pred HHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 594 LLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
++..+|+-++--+.+....+....+|+.+..+|.+|.+.|+..+|-+.+.+|-+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3455666666666666666555556788888888888888888888888877654
No 426
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=62.30 E-value=1.1e+02 Score=26.80 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991 463 GESVEAIQDLSKALEFEPNSADILHERGIVN 493 (781)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (781)
+.....+.+++.++..++.++..+..+..+|
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly 51 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELY 51 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHH
Confidence 3444444444444444333333333333333
No 427
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.80 E-value=74 Score=32.26 Aligned_cols=200 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHhhCcccH---------------------------
Q 003991 502 AVEDLSACVKLDKENKSAYTY---LGLALSSIGEYKKAEEAHLKAIQLDRNFL--------------------------- 551 (781)
Q Consensus 502 A~~~~~~a~~~~p~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------- 551 (781)
+...|+++.+.-|+.....+. -|.++...++|.+....+..+-.......
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 003991 552 ------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625 (781)
Q Consensus 552 ------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 625 (781)
...+.+|.-|+..++++.|.--|+++...... ....+.++++--++-+.....++..-..+
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~-------------AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ 186 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRR-------------AKEFYYEEVQKAIKEIDSSKHNINMERSR 186 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhccCCCchhHHH
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHHHHhcCchh
Q 003991 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKN 705 (781)
Q Consensus 626 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 705 (781)
+. -..-.+.-...|-.-.+-..+-...| +-|..+..+...+.+..+...+..+.-+.|....+....+.+..
T Consensus 187 ae---~s~~i~n~Y~ny~~~yea~~~l~npY-----v~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY~~~~k 258 (449)
T COG3014 187 AE---VSEILNNTYSNYLDKYEAYQGLLNPY-----VSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQYLVFFK 258 (449)
T ss_pred HH---HHHHHHHHHHHHHHHHHhhcccchHH-----HHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHhcceec
Q ss_pred hhhhhhcCCCCcchhcccccccccccchHHHHHHHHHHhhhh
Q 003991 706 VCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIG 747 (781)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~eqg~g 747 (781)
... +.+.+.|.-|||+|
T Consensus 259 ~~~-------------------------A~~~V~Vi~E~G~~ 275 (449)
T COG3014 259 NPN-------------------------ASHFVWVIIEDGKE 275 (449)
T ss_pred cCC-------------------------ccceEEEEEecCcc
No 428
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.18 E-value=1.7e+02 Score=33.11 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHH---HccCHHHHHHHHHHHHHhC-CCc
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP------EALIGRGTARA---FQRELEAAISDFTEAIQSN-PSA 448 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~---~~g~~~~A~~~~~~al~~~-p~~ 448 (781)
..++.-..+-..|....+|+.-+++.+.. +.-|+.. ...+..+-++- .-|+-++|+...-.+++.. |-.
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 34555555555555566666555555443 2223211 11111111111 1355556665555555432 333
Q ss_pred HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCC
Q 003991 449 GEAWKRRGQARAA---------LGESVEAIQDLSKALEFEP 480 (781)
Q Consensus 449 ~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p 480 (781)
++.+...|++|.. .+..+.|+.+|+++++..|
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP 318 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEP 318 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCc
Confidence 4445555555432 2334555666666666555
No 429
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=57.98 E-value=71 Score=33.74 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 003991 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (781)
Q Consensus 395 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (781)
+..-+|+.+++.++..+|.+......+..+|...|-...|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34557888888888888888888888888888888888888888653
No 430
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.72 E-value=1.9e+02 Score=31.97 Aligned_cols=99 Identities=17% Similarity=0.020 Sum_probs=53.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 003991 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (781)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 470 (781)
+...|+++.|...+-.+- .+.....+..+..+|-.++|++ +.++.. - .-.+..+.|+++.|..
T Consensus 596 ~vmrrd~~~a~~vLp~I~------k~~rt~va~Fle~~g~~e~AL~-------~s~D~d-~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP------KEIRTKVAHFLESQGMKEQALE-------LSTDPD-Q---RFELALKLGRLDIAFD 658 (794)
T ss_pred HhhhccccccccccccCc------hhhhhhHHhHhhhccchHhhhh-------cCCChh-h---hhhhhhhcCcHHHHHH
Confidence 334555555554333221 1233445555556665555443 332221 1 1233456677777766
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003991 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (781)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 511 (781)
...++ ++..-|..||.+....+++..|.+++.++..
T Consensus 659 la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 659 LAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 54443 3456677777777777777777777777643
No 431
>PF13041 PPR_2: PPR repeat family
Probab=56.30 E-value=49 Score=22.72 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=10.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991 588 YHLRGLLLHGLGQHKKAIKDLSSGL 612 (781)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al 612 (781)
|..+-..+.+.|++++|.+.|++..
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 432
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=54.55 E-value=1.5e+02 Score=25.92 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=18.3
Q ss_pred HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 003991 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (781)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (781)
..+.....+.+++.++..++.++..+..+..+|..
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 34455555555555555554445455555555543
No 433
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=54.40 E-value=67 Score=33.92 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003991 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507 (781)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 507 (781)
-+|+..++.++...|.+......+..+|...|-...|...|.
T Consensus 200 ~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 200 LQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444455555555555555555555555555555555443
No 434
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.18 E-value=53 Score=33.09 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=67.1
Q ss_pred hhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchhh-hhhHHHHHHhhhCHHHHHHHH
Q 003991 14 NKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQD-ICNRAFCYSQLELHKHVIRDC 92 (781)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~-~~~rA~~~~~~~~~~~A~~~~ 92 (781)
+..|-++++..++..-..+.......|..+-.+++..+...=-++.-....+.-+... -..++.---++..+++++++.
T Consensus 15 ~~p~le~sq~~FlLt~p~~~~~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~ieda 94 (393)
T KOG0687|consen 15 RVPDLELSQLRFLLTHPEVLGQKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDA 94 (393)
T ss_pred cCcchhHHHHHHHHcCccccCcCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344556666666665555433344444454444444433322222222222222222 223344445566777777777
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 93 DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (781)
Q Consensus 93 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 130 (781)
++-+ -+..-.+|+.+.|.-|.+.|+.+.|.+.+.+..
T Consensus 95 eenl-GE~ev~ea~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 95 EENL-GESEVREAMLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHhc-chHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7652 244557799999999999999999999998884
No 435
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.95 E-value=1.8e+02 Score=32.26 Aligned_cols=132 Identities=18% Similarity=0.109 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (781)
..-..+..+-.+|-.++|+ +..++. .- .=.+..+.|+++.|.....++ ++..-|..||.+....
T Consensus 616 ~rt~va~Fle~~g~~e~AL-------~~s~D~-d~---rFelal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQAL-------ELSTDP-DQ---RFELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhHHhHhhhccchHhhh-------hcCCCh-hh---hhhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhc
Confidence 4444555555666655554 443332 22 223445778888888766554 5566788899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (781)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (781)
+++..|.++|.++.... .|-.++...|+-+--...-..+-+....+.. -.+++..|+++++++.+..
T Consensus 680 ~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A-----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 680 GELPLASECFLRARDLG--------SLLLLYTSSGNAEGLAVLASLAKKQGKNNLA-----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ccchhHHHHHHhhcchh--------hhhhhhhhcCChhHHHHHHHHHHhhcccchH-----HHHHHHcCCHHHHHHHHHh
Confidence 99999999998875432 1222223334433222222222222222211 1356667888887777665
Q ss_pred H
Q 003991 543 A 543 (781)
Q Consensus 543 a 543 (781)
.
T Consensus 747 t 747 (794)
T KOG0276|consen 747 T 747 (794)
T ss_pred c
Confidence 4
No 436
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.55 E-value=39 Score=31.81 Aligned_cols=49 Identities=18% Similarity=0.001 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
+..++..++.+...|+ +.++..++.++...|+.++|.....++..+.|.
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4445566666666775 788888888888888888888888888888883
No 437
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=51.86 E-value=79 Score=24.32 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILK 409 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 409 (781)
+..+...|..+-..|++.+|+.+|+++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455666777777777777777766554
No 438
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=50.98 E-value=36 Score=26.14 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=8.4
Q ss_pred HHHHHhcCCCchhHHHHHH
Q 003991 92 CDKALQLDPTLLQAYILKG 110 (781)
Q Consensus 92 ~~~al~~~p~~~~a~~~lg 110 (781)
+.+++...|+.....+.++
T Consensus 36 L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 36 LSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHhCCChHHHHHHHH
Confidence 3334444555554443333
No 439
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.91 E-value=2.7e+02 Score=29.54 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003991 486 LHERGIVNFKFKDFNAAVEDLSACVK 511 (781)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~a~~ 511 (781)
+..-|.+.+.+|+-++|.++++.+..
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 44456667777777777777776654
No 440
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.09 E-value=9e+02 Score=33.66 Aligned_cols=113 Identities=13% Similarity=0.140 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHH---HHHHHHHHCC-CHHHHHHHHHHhhcc---CCCCHHHHHH
Q 003991 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYH---LRGLLLHGLG-QHKKAIKDLSSGLGI---DPSNIECLYL 624 (781)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~---~la~~~~~~g-~~~~A~~~~~~al~~---~p~~~~~~~~ 624 (781)
+....|.+....|-++.++..+.+...+..-. .++.. .-+.+|.... ....++++.+..--. +...++.+..
T Consensus 2738 ~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~l 2817 (3550)
T KOG0889|consen 2738 AINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTL 2817 (3550)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHh
Confidence 34455666666777777777776665543211 12222 2233444433 444444444322110 1123567788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 003991 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665 (781)
Q Consensus 625 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 665 (781)
.|....++|+.++|...|..|++++..-+.+|..-|.....
T Consensus 2818 kG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2818 KGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred hhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999998888887666554443
No 441
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=49.99 E-value=1e+02 Score=22.70 Aligned_cols=58 Identities=12% Similarity=0.003 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 003991 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCW 682 (781)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 682 (781)
..|..+...|+|=+|-+.++.+....|.. ......+++....+......|+..-|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~-~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGP-ERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CC-HHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34556677788888888888887665554 55566666666666666666666655443
No 442
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=49.33 E-value=3e+02 Score=27.92 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=45.5
Q ss_pred hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 003991 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--D--PMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (781)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (781)
-...|...+.++..|...+..|+|..|-.++-..... + +++..++++.-..-.-..+|+.|++.+.+.-+.
T Consensus 122 ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 122 YNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3446667778888888888888888887765544332 2 233444444444444556788888887776553
No 443
>PRK12798 chemotaxis protein; Reviewed
Probab=49.21 E-value=3.5e+02 Score=28.71 Aligned_cols=215 Identities=13% Similarity=0.091 Sum_probs=139.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcHHHHHHHHH-HHHHcCCHHHH
Q 003991 392 VNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSAGEAWKRRGQ-ARAALGESVEA 468 (781)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~-~~~~~g~~~~A 468 (781)
+.-|+... ++.++..++. +.+.-...|..-+-.|+-.+|.+.+..+-.. .|.....+..|.. ......+...|
T Consensus 92 lSGGnP~v----lr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~A 167 (421)
T PRK12798 92 LSGGNPAT----LRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATA 167 (421)
T ss_pred hcCCCHHH----HHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHH
Confidence 34455433 3334444443 4556666777778889999998888765432 2333333444333 33455689999
Q ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 469 IQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS---AYTYLGLALSSIGEYKKAEEAHLK 542 (781)
Q Consensus 469 ~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~ 542 (781)
+..|+.+--..|.. ..++..-..+....|+.+++..+..+.+.....++. .+..++.......+-.. ...+..
T Consensus 168 l~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~ 246 (421)
T PRK12798 168 LKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVE 246 (421)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHH
Confidence 99999998888876 224444455567889999998888888887766643 33334444444443222 223445
Q ss_pred HHhh-Ccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 003991 543 AIQL-DRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----RFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (781)
Q Consensus 543 al~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (781)
.+.. +|. ....|..++..-...|+.+-|...-++++.+.. +...+.+..+....-..++++|+..+...
T Consensus 247 ~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 247 ILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 5544 333 367888899999999999999999999987753 23455566666666777888888887765
No 444
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=48.96 E-value=27 Score=20.70 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=7.0
Q ss_pred HHHHHCCCHHHHHHHHHH
Q 003991 593 LLLHGLGQHKKAIKDLSS 610 (781)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~ 610 (781)
..|.+.|++++|.+.|++
T Consensus 8 ~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 8 SGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHccchHHHHHHHHHH
Confidence 333333444444443333
No 445
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=47.08 E-value=4.4e+02 Score=30.18 Aligned_cols=31 Identities=16% Similarity=0.106 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhchhhHHHHHhhhcCCCcccH
Q 003991 663 FYQKEIALYTASKINSEFCWFDIDGDIDPLFK 694 (781)
Q Consensus 663 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 694 (781)
.......++..++++.|+..+++.. +-|...
T Consensus 508 ~L~~ff~~~~~g~~~~AL~~i~~L~-liP~~~ 538 (613)
T PF04097_consen 508 DLAEFFDLYHAGQYEQALDIIEKLD-LIPLDP 538 (613)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHTT--S-S-H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCCCH
Confidence 3344566788999999999986544 566433
No 446
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=46.86 E-value=1.2e+02 Score=26.44 Aligned_cols=51 Identities=8% Similarity=-0.012 Sum_probs=24.8
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (781)
Q Consensus 563 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (781)
.+|+-++-.+.+....+....+|..+..+|.+|.+.|+..+|-+.+.+|.+
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 445555555555555444444556666666666666666666666665544
No 447
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=44.82 E-value=1e+02 Score=25.74 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 430 (781)
....+..|...+..|++..|.+...++-+..+..+-.+..-+.+-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 45566778888888888888888888877665555556666666666554
No 448
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=44.69 E-value=6.7e+02 Score=30.62 Aligned_cols=109 Identities=17% Similarity=0.034 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH---HHHHHHH
Q 003991 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW---GHLTQFY 561 (781)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~la~~~ 561 (781)
++...|..+...+.+++|.-.|+.+-++. .--.+|...|++.+|+....+. .+...... ..|+.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkle--------kAl~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKLE--------KALKAYKECGDWREALSLAAQL---SEGKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccHH--------HHHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHHHHH
Confidence 44445555555555655555554432110 0112334445555555444332 22222222 4566666
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 003991 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (781)
Q Consensus 562 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (781)
...+++-+|-+.....+.. |. .+ -..+.+...|++|+.....+
T Consensus 1010 ~e~~kh~eAa~il~e~~sd-~~--~a----v~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD-PE--EA----VALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHhcC-HH--HH----HHHHhhHhHHHHHHHHHHhc
Confidence 6777777777666655432 11 11 12234445666666655444
No 449
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.41 E-value=1.2e+02 Score=34.33 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHH---HcCCHHHHHHHHHHHHHhCC-CCH
Q 003991 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE------AWKRRGQARA---ALGESVEAIQDLSKALEFEP-NSA 483 (781)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~---~~g~~~~A~~~~~~al~~~p-~~~ 483 (781)
+++...++-..|....+|+.-++..+..-. -|+..+ +.+..+-++. .-|+-++|+...-.+++... -.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 445556666666667777666665554433 232211 1111222222 12556666666665555432 234
Q ss_pred HHHHHHHHHHHh---------cCCHHHHHHHHHHHHHhCCC
Q 003991 484 DILHERGIVNFK---------FKDFNAAVEDLSACVKLDKE 515 (781)
Q Consensus 484 ~~~~~la~~~~~---------~~~~~~A~~~~~~a~~~~p~ 515 (781)
+.+...|++|-. .+..+.|+++|+++.+..|.
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch
Confidence 555555555532 23344556666666655554
No 450
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.79 E-value=1.6e+02 Score=24.04 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=39.8
Q ss_pred HHHHHHhcC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHH
Q 003991 91 DCDKALQLD-PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLE 145 (781)
Q Consensus 91 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 145 (781)
.++++-..+ |--+-.|-.+|.+|...|+.+.|++.|++--.+=|++..-+..++.
T Consensus 59 ~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLmk 114 (121)
T COG4259 59 YLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLMK 114 (121)
T ss_pred HHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHHH
Confidence 444443333 2223477889999999999999999999877778888777666653
No 451
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=43.22 E-value=3.5e+02 Score=27.01 Aligned_cols=29 Identities=7% Similarity=0.062 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALE 477 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 477 (781)
.+++.++|..|.+.++.+.+.+++.+.+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34566666666666666666666555554
No 452
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=42.39 E-value=39 Score=26.02 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 003991 55 AIRILDSLLA 64 (781)
Q Consensus 55 A~~~y~~ai~ 64 (781)
|+...++|++
T Consensus 6 A~~l~~~Ave 15 (75)
T cd02677 6 AAELIRLALE 15 (75)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 453
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=42.20 E-value=64 Score=19.54 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHc
Q 003991 88 VIRDCDKALQLDPTLLQAYILKGCAFSAL 116 (781)
Q Consensus 88 A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 116 (781)
.+..+.++|..+|.+..++..+-.+...+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 46678899999999999998877665543
No 454
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.86 E-value=57 Score=25.11 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=8.3
Q ss_pred ccCHHHHHHHHHHHHH
Q 003991 428 QRELEAAISDFTEAIQ 443 (781)
Q Consensus 428 ~g~~~~A~~~~~~al~ 443 (781)
.|++++|+.+|..+++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4555555555555544
No 455
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.75 E-value=36 Score=26.21 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHHHh
Q 003991 117 GRKEEALSVWEKGYE 131 (781)
Q Consensus 117 g~~~~A~~~~~~al~ 131 (781)
|++++|...|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777777777754
No 456
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=41.64 E-value=3.1e+02 Score=25.89 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Q 003991 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT-QFYQDLANSEKALECLQQVLY 579 (781)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~ 579 (781)
.+..+-......|+++.|-++|--.+...+-+....-.+| .++...+.-....++++....
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 4445556666778888888888887777665555444444 344444444443344444433
No 457
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=41.48 E-value=1.7e+02 Score=32.62 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=62.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003991 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK 640 (781)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 640 (781)
+.+....+.+....+.-+.-........+..+..+...+..++|-.+|++.+..+|+ ..++..|.-+.+.|-...|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 344556666766666655545555666777788888899999999999999998888 678888888889998888887
Q ss_pred HHH
Q 003991 641 DYD 643 (781)
Q Consensus 641 ~~~ 643 (781)
.++
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 777
No 458
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=41.35 E-value=52 Score=19.87 Aligned_cols=21 Identities=14% Similarity=-0.077 Sum_probs=9.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHh
Q 003991 591 RGLLLHGLGQHKKAIKDLSSG 611 (781)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~a 611 (781)
+-..|.+.|++++|.+.|.+.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333444444444444444443
No 459
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=41.25 E-value=1.4e+02 Score=25.43 Aligned_cols=58 Identities=10% Similarity=-0.064 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 003991 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---------------PEALIGRGTARAFQRELEAAISDFTEA 441 (781)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (781)
+..+|...++.+++-.++-.|++++....+- .....++|..+...|+.+-.+++++-|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 4566777888888888888888887642210 123456666666677766666666544
No 460
>PF15469 Sec5: Exocyst complex component Sec5
Probab=41.18 E-value=3e+02 Score=25.53 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=20.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc
Q 003991 42 ELAKLCSLRNWSKAIRILDSLLAQS 66 (781)
Q Consensus 42 ~~~~~~~~g~~~~A~~~y~~ai~~~ 66 (781)
.+.+++..|+|+.|+..|.+|-.+.
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4467788899999999999888776
No 461
>PRK12798 chemotaxis protein; Reviewed
Probab=40.82 E-value=4.7e+02 Score=27.80 Aligned_cols=229 Identities=13% Similarity=0.023 Sum_probs=147.3
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Q 003991 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILH 487 (781)
Q Consensus 410 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 487 (781)
.+|.|..+ +.+|...|--...++ .++..++. +.+.-..-|..-+-.|+..++.+.+...-... |.....+.
T Consensus 79 ~dprNv~A----a~iy~lSGGnP~vlr---~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~l 151 (421)
T PRK12798 79 DDPRNVDA----ALIYLLSGGNPATLR---KLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYL 151 (421)
T ss_pred CCccchhH----HHhhHhcCCCHHHHH---HHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHH
Confidence 35555443 445555544433333 33444432 45555666777788999999999887654322 22223333
Q ss_pred HHH-HHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH---HHHHHHHH
Q 003991 488 ERG-IVNFKFKDFNAAVEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE---AWGHLTQF 560 (781)
Q Consensus 488 ~la-~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~la~~ 560 (781)
.|. -......+...|+..|+.+--..|... .++..-..+....|+.++...+-.+.+.....++. .+..++..
T Consensus 152 aLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~ 231 (421)
T PRK12798 152 ALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDL 231 (421)
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 333 334556789999999999999999863 34444455667899999999988888887766543 33444444
Q ss_pred HHHcCCHHHHHHHHHHHHhh-CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC----CHHHHHHHHHHHHHhCC
Q 003991 561 YQDLANSEKALECLQQVLYI-DKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----NIECLYLRASCYHAIGE 634 (781)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~ 634 (781)
+...++-..- ..+...+.. +|. ...+|..++..-...|+.+-|.-.-.+++.+... ...+.++.+....-..+
T Consensus 232 ~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~ 310 (421)
T PRK12798 232 VVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDD 310 (421)
T ss_pred HHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCccc
Confidence 4444432222 335555543 443 3568889999999999999999999999887533 34556666666666777
Q ss_pred HHHHHHHHHHHH
Q 003991 635 YREAIKDYDAAL 646 (781)
Q Consensus 635 ~~~A~~~~~~al 646 (781)
+++|.+.+.+.-
T Consensus 311 ~~~al~~L~~I~ 322 (421)
T PRK12798 311 AESALEELSQID 322 (421)
T ss_pred HHHHHHHHhcCC
Confidence 888887776553
No 462
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.49 E-value=4.7e+02 Score=27.64 Aligned_cols=54 Identities=13% Similarity=-0.106 Sum_probs=28.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHH--HHHHHHcCCHHHHHHHHHH
Q 003991 489 RGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYL--GLALSSIGEYKKAEEAHLK 542 (781)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~l--a~~~~~~g~~~~A~~~~~~ 542 (781)
.+..++..++|..|...|..+....+.. ...+..+ |..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3345556666666666666666553321 1222223 3334455666777777764
No 463
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=40.17 E-value=1.2e+02 Score=27.42 Aligned_cols=64 Identities=13% Similarity=-0.054 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHH-Hhcc------c--chhhhhhHHHHHHhhhCHHHHHHHHHHHHh
Q 003991 34 ASAITARIELAKLCSLRNWSKAIRILDSL-LAQS------Y--EIQDICNRAFCYSQLELHKHVIRDCDKALQ 97 (781)
Q Consensus 34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~a-i~~~------~--~~~~~~~rA~~~~~~~~~~~A~~~~~~al~ 97 (781)
+.....+...++.+..|+.+.|...+.-+ .++. | ....-.++|..++..|++.+|...+..|++
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 44456667888999999999999988875 3332 1 112255889999999999999988888764
No 464
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.08 E-value=62 Score=25.00 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=11.3
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 003991 48 SLRNWSKAIRILDSLLAQ 65 (781)
Q Consensus 48 ~~g~~~~A~~~y~~ai~~ 65 (781)
..|+|++|+.+|.++|+.
T Consensus 18 ~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 556666666666666554
No 465
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.84 E-value=7.8e+02 Score=30.03 Aligned_cols=119 Identities=17% Similarity=0.113 Sum_probs=56.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 003991 457 QARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYTYLGLALSS 529 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~ 529 (781)
+++..-+-.+.+.+...+|++.-|.+ +.....+-..+...|.+-+|...+ -.+|+.. ..+..+..+++.
T Consensus 991 rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 991 RLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHh
Confidence 34444556666666666666654433 223334444455566666665433 2344432 234455555666
Q ss_pred cCCHH------------HHHH-HHHHHHhhCccc-HHHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Q 003991 530 IGEYK------------KAEE-AHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALE-CLQQVLY 579 (781)
Q Consensus 530 ~g~~~------------~A~~-~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~-~~~~al~ 579 (781)
.|+++ +-.. .++.+-+..|.. ...|..|-..+...+++.+|-. .|+.+..
T Consensus 1067 cg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1067 CGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred ccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 55543 2222 233333333322 2334444444556666665543 3444443
No 466
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=39.22 E-value=1.8e+02 Score=25.89 Aligned_cols=33 Identities=12% Similarity=-0.077 Sum_probs=26.8
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhcccchhhhh
Q 003991 41 IELAKLCSLR-NWSKAIRILDSLLAQSYEIQDIC 73 (781)
Q Consensus 41 ~~~~~~~~~g-~~~~A~~~y~~ai~~~~~~~~~~ 73 (781)
..|..++..| ++.+|..+|-+||..+++|..+.
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL 128 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLL 128 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHH
Confidence 4455678888 99999999999999998887643
No 467
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.39 E-value=3.5e+02 Score=25.55 Aligned_cols=31 Identities=6% Similarity=-0.100 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003991 454 RRGQARAALGESVEAIQDLSKALEFEPNSAD 484 (781)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 484 (781)
.+-......|+++.|-++|--++...+-+..
T Consensus 46 ~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR 76 (199)
T PF04090_consen 46 DLLHLCLLRGDWDRAYRAFGLLIRCPEVDIR 76 (199)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcCCCCChH
Confidence 3333444455555555555555544443333
No 468
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.08 E-value=5.3e+02 Score=27.28 Aligned_cols=93 Identities=12% Similarity=-0.049 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--------cHHH
Q 003991 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--------FLEA 553 (781)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~ 553 (781)
++..+|..|...|+.+.|++.|-++-...... ...+.++-.+-...|+|..-..+..++...-.. .+.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 56667777777777777777777755443322 345566666667777777777777766554100 0223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 554 WGHLTQFYQDLANSEKALECLQQV 577 (781)
Q Consensus 554 ~~~la~~~~~~g~~~~A~~~~~~a 577 (781)
...-|.+.+..++|..|.++|-.+
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444444455666666666554
No 469
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=37.03 E-value=4e+02 Score=26.75 Aligned_cols=35 Identities=23% Similarity=0.179 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Q 003991 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (781)
Q Consensus 534 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 568 (781)
+.|...+.+++.++|....++..+..+-...|..+
T Consensus 116 d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 116 DQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 55666677777777776666666666665566554
No 470
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=37.03 E-value=1.6e+02 Score=22.79 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=11.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHh
Q 003991 626 ASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 626 a~~~~~~g~~~~A~~~~~~al~ 647 (781)
|.-+-..|++++|+.+|.++++
T Consensus 13 Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 13 AVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3444455666655555555543
No 471
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.90 E-value=1.6e+02 Score=25.55 Aligned_cols=31 Identities=10% Similarity=-0.077 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccchhh
Q 003991 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD 71 (781)
Q Consensus 41 ~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~ 71 (781)
..|..++.+|+++++..++-+||-.++.|.-
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaq 116 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQ 116 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHHH
Confidence 4556789999999999999999999966554
No 472
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.78 E-value=62 Score=25.20 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 106 YILKGCAFSALGRKEEALSVWEKGYE 131 (781)
Q Consensus 106 ~~~lg~~~~~~g~~~~A~~~~~~al~ 131 (781)
++..|..+-..|+.++|+.+|++++.
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 44445555666899999999999864
No 473
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=36.62 E-value=45 Score=32.15 Aligned_cols=34 Identities=9% Similarity=-0.075 Sum_probs=26.0
Q ss_pred HHHHHHHHHHH---------HhCCHHHHHHHHHHHHhhccCcH
Q 003991 620 ECLYLRASCYH---------AIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 620 ~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
..+...|..+. ..++...|+.++++|++++|+..
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 44556666663 45678899999999999999753
No 474
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=36.21 E-value=80 Score=23.65 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 106 YILKGCAFSALGRKEEALSVWEKGYE 131 (781)
Q Consensus 106 ~~~lg~~~~~~g~~~~A~~~~~~al~ 131 (781)
+...|.-.-..|++++|+..|.+|++
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445556667888888888888754
No 475
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.35 E-value=5.1e+02 Score=26.53 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPN---S---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SA 519 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~ 519 (781)
.+++..+|..|.+.|+-+.|.+.+.+..+..-. . .-....+|..|....-..+.++-.+..++...+.. ..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 457778888888888888888877776654321 1 22344556666555545555555555555443321 22
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Q 003991 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDR 548 (781)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (781)
-...|.......++.+|-..|..++....
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 23345566666777888777777765543
No 476
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=34.94 E-value=85 Score=18.94 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=10.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHh
Q 003991 589 HLRGLLLHGLGQHKKAIKDLSSG 611 (781)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~a 611 (781)
..+..++.+.|+++.|..+|+..
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444444444444444444443
No 477
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=34.78 E-value=4.5e+02 Score=25.80 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhc-----cCCCCHH---HHHHHHHHH-HHhCCHHHHHHHHHHHHhh
Q 003991 601 HKKAIKDLSSGLG-----IDPSNIE---CLYLRASCY-HAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 601 ~~~A~~~~~~al~-----~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~~ 648 (781)
.+.|...|+.|++ +.|.+|. ...+.+..| .-+++.++|....++++.-
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4467777777764 3466653 334444444 4568888888877776653
No 478
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=34.13 E-value=79 Score=24.49 Aligned_cols=17 Identities=6% Similarity=0.061 Sum_probs=10.0
Q ss_pred hcCCHHHHHHHHHHHHh
Q 003991 48 SLRNWSKAIRILDSLLA 64 (781)
Q Consensus 48 ~~g~~~~A~~~y~~ai~ 64 (781)
..|+|++|+.+|.++|+
T Consensus 18 ~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 18 QEGRFQEALVCYQEGID 34 (77)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 55666666666655443
No 479
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=33.66 E-value=2.4e+02 Score=31.60 Aligned_cols=80 Identities=15% Similarity=0.047 Sum_probs=64.6
Q ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003991 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (781)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 607 (781)
.+....+.+....+.-+.-........+..+..+...+..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHH
Confidence 34455666666666655555555677788888999999999999999999999988 7788888999999999999988
Q ss_pred HH
Q 003991 608 LS 609 (781)
Q Consensus 608 ~~ 609 (781)
+.
T Consensus 97 ~~ 98 (578)
T PRK15490 97 LK 98 (578)
T ss_pred HH
Confidence 88
No 480
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=33.57 E-value=14 Score=41.18 Aligned_cols=95 Identities=21% Similarity=0.217 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHH--HHhCC-CcHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILK--EDP-MYPEALIGRGTARAFQRELEAAISDFTEA--IQSNP-SAGEAWK 453 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a--l~~~p-~~~~~~~ 453 (781)
....++.-+..++..|++..|..++.++-. +.| ......+..|.+....|+++.|+..+... ..+.+ .....+.
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~ 102 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQ 102 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHH
Confidence 344455555666666666666666665541 111 12234445566666666666666665531 01111 1122333
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 003991 454 RRGQARAALGESVEAIQDLSK 474 (781)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~ 474 (781)
..+.++...|++-+|...+-.
T Consensus 103 l~A~a~~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 103 LRAQAYEQQGDPLAAARERIA 123 (536)
T ss_dssp ---------------------
T ss_pred HHHHHHHhcCCHHHHHHHHHH
Confidence 445555555555555544433
No 481
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=33.39 E-value=5.1e+02 Score=25.99 Aligned_cols=137 Identities=11% Similarity=-0.032 Sum_probs=77.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH---HHccCH----HHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991 388 GIAQVNEGKYASAISIFDQILKEDPM--YPEALIGRGTAR---AFQREL----EAAISDFTEAIQSNPSAGEAWKRRGQA 458 (781)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~---~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (781)
...++..++|++=-..+.+......+ ..+..+..+... ...... ..-...++.=++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45577888888888888877653222 111112222211 111111 134555666677788888888877777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (781)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 536 (781)
+....---.....- +.-...-|..... -.+.|...+.+++.++|....+...+-.+....|..+=-
T Consensus 87 ~~~~Aw~~RG~~~A------~~V~~~~W~~~~~------~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~WL 152 (277)
T PF13226_consen 87 WVHRAWDIRGSGYA------STVTEAQWLGAHQ------ACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDWL 152 (277)
T ss_pred HHHHHHHHHccchh------cccCHHHHHHHHH------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchHH
Confidence 65432110000000 0001222322222 246788999999999999998888888888888877643
No 482
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.90 E-value=1.1e+02 Score=28.63 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 003991 86 KHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134 (781)
Q Consensus 86 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 134 (781)
...+...++.+...|+ +..+.+++.++..+|+.++|.....++..+-|
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444455555555563 55666666666666666666666666665555
No 483
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=32.58 E-value=1e+03 Score=29.21 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=6.4
Q ss_pred cCCHHHHHHHHHH
Q 003991 496 FKDFNAAVEDLSA 508 (781)
Q Consensus 496 ~~~~~~A~~~~~~ 508 (781)
+++|+.|+..+.+
T Consensus 893 L~ry~~AL~hLs~ 905 (1265)
T KOG1920|consen 893 LKRYEDALSHLSE 905 (1265)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554443
No 484
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=32.38 E-value=1.4e+02 Score=24.96 Aligned_cols=41 Identities=20% Similarity=0.071 Sum_probs=16.4
Q ss_pred HHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHc
Q 003991 76 AFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSAL 116 (781)
Q Consensus 76 A~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 116 (781)
|..-+-.|||..|.+...++-+..+.-.-.|..-+.+-..+
T Consensus 66 Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~ 106 (108)
T PF07219_consen 66 GLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQ 106 (108)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 33334444444444444444433333333333333333333
No 485
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=32.27 E-value=4.1e+02 Score=26.55 Aligned_cols=127 Identities=10% Similarity=-0.081 Sum_probs=79.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--------C--CCHHHH---HHH-HHHHHHCCCHHHHHHHHHHhhccCCCC-HHHH
Q 003991 558 TQFYQDLANSEKALECLQQVLYID--------K--RFSKAY---HLR-GLLLHGLGQHKKAIKDLSSGLGIDPSN-IECL 622 (781)
Q Consensus 558 a~~~~~~g~~~~A~~~~~~al~~~--------~--~~~~~~---~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 622 (781)
+..+.-..||..|+..++++++.- + ...+.- ..+ ..++..++++.+.+.+.-+..+.-.+- +.+.
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl 121 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH
Confidence 334444556666666666665432 1 111221 222 346778999999988877766643333 4555
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhh
Q 003991 623 YLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI 685 (781)
Q Consensus 623 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 685 (781)
..---.|.+.|++....+.-..-+ .+|+|-..--+.+.+-...-..+..+|.+.+|......
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL-~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWL-QDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-hCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 555566778888877666555444 46666555445556666667788899999999998743
No 486
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=31.89 E-value=5e+02 Score=25.48 Aligned_cols=24 Identities=4% Similarity=0.028 Sum_probs=11.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Q 003991 421 RGTARAFQRELEAAISDFTEAIQS 444 (781)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~ 444 (781)
+|.+..+.++|++.+.+..++++.
T Consensus 7 ~Aklaeq~eRyddm~~~mk~~~~~ 30 (244)
T smart00101 7 MAKLAEQAERYEEMVEFMEKVAKT 30 (244)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhh
Confidence 444444445555555555554443
No 487
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=31.84 E-value=90 Score=19.18 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHc----CCHHHHHHHHHHH
Q 003991 104 QAYILKGCAFSAL----GRKEEALSVWEKG 129 (781)
Q Consensus 104 ~a~~~lg~~~~~~----g~~~~A~~~~~~a 129 (781)
.+.+.+|..|..- .+...|...|++|
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~A 31 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKA 31 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence 5678888887653 3889999999998
No 488
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=31.62 E-value=3.1e+02 Score=23.48 Aligned_cols=24 Identities=8% Similarity=-0.104 Sum_probs=11.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 522 YLGLALSSIGEYKKAEEAHLKAIQ 545 (781)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~ 545 (781)
.+|....+.+++-.++-.|++|+.
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls 29 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALS 29 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHH
Confidence 344444444555455555544443
No 489
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.35 E-value=1.1e+02 Score=23.75 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 622 LYLRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
+...|.-+-..|+|++|+.+|..+++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334445555677777777777777654
No 490
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=31.04 E-value=84 Score=19.58 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHhcccchhhhh
Q 003991 51 NWSKAIRILDSLLAQSYEIQDIC 73 (781)
Q Consensus 51 ~~~~A~~~y~~ai~~~~~~~~~~ 73 (781)
++++|...|.+.+...|++....
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHH
Confidence 45667777777776666655543
No 491
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=31.02 E-value=2.3e+02 Score=21.17 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 623 YLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 623 ~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
...|.-+-..|++++|+.+|.++++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445556677766666666654
No 492
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.94 E-value=5.7e+02 Score=25.88 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchhhhhhHHHHHHhhhCHHHHHH-HHHH-----HHhcCCCchhHHH
Q 003991 34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIR-DCDK-----ALQLDPTLLQAYI 107 (781)
Q Consensus 34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~~~~rA~~~~~~~~~~~A~~-~~~~-----al~~~p~~~~a~~ 107 (781)
.........+..++..|+|..|++.+...-..-.....+.-....-.++.++.+-+. ..+. +...| +..|.
T Consensus 125 ~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd---~~~Y~ 201 (291)
T PF10475_consen 125 KTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFD---PDKYS 201 (291)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHH
Confidence 334445567788999999999999988765554211111111111222233222222 1111 22233 34667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 003991 108 LKGCAFSALGRKEEALSVWEKG 129 (781)
Q Consensus 108 ~lg~~~~~~g~~~~A~~~~~~a 129 (781)
.+=.+|..+|+...+.+-+...
T Consensus 202 ~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 202 KVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Confidence 7777888888888887544443
No 493
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=30.26 E-value=8.8e+02 Score=27.77 Aligned_cols=150 Identities=13% Similarity=0.113 Sum_probs=57.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH---HH---HH
Q 003991 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ---AR---AA 461 (781)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~---~~---~~ 461 (781)
-..++-.|.|+.|+.++-+ .+.+..--..+|.++...|-+...-..-...+...+.++.. .+++. .| +.
T Consensus 265 f~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHHh
Confidence 3457779999999999877 22222222334444444443333333224455544443221 22222 22 23
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHHhcCCHHH--------------HHHHHHHHHHhCCCCH---HHHHH
Q 003991 462 LGESVEAIQDLSKALEFE-PNSA-DILHERGIVNFKFKDFNA--------------AVEDLSACVKLDKENK---SAYTY 522 (781)
Q Consensus 462 ~g~~~~A~~~~~~al~~~-p~~~-~~~~~la~~~~~~~~~~~--------------A~~~~~~a~~~~p~~~---~~~~~ 522 (781)
..+..+|+++|--+-... |... -.+..+..+....++++. .++-..+.+....... .+...
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~ 419 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQ 419 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHH
Confidence 467788888776543332 2111 123333333333332222 2222222222332222 33444
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 003991 523 LGLALSSIGEYKKAEEAHLK 542 (781)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~ 542 (781)
.|.-....|++++|+..|.-
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~L 439 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHL 439 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 56666777888877777654
No 494
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=30.02 E-value=1.6e+02 Score=33.62 Aligned_cols=101 Identities=20% Similarity=0.195 Sum_probs=67.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 003991 489 RGIVNFKFKDFNAAVEDLSACVKLDKEN----KSAYTYLGLALSS--IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562 (781)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 562 (781)
-+..++..+++..|.--|..++.+-|.+ .....+.+.++.. .|++..++.-..-++...|....++...+..|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 4556666777777766677777766643 2333444444443 567777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003991 563 DLANSEKALECLQQVLYIDKRFSKAYH 589 (781)
Q Consensus 563 ~~g~~~~A~~~~~~al~~~~~~~~~~~ 589 (781)
..+.++-|++.+.-.....|.+..+..
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 777777777776666667777654443
No 495
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=29.46 E-value=6.2e+02 Score=25.79 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------------
Q 003991 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS------------- 444 (781)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------- 444 (781)
|...+..-.+-..+ ..+++.+.++.+++.+...|--.+..+..+.++.++| ++.+.......+..
T Consensus 97 ~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F 174 (301)
T TIGR03362 97 PPPADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKF 174 (301)
T ss_pred CCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhccc
Q ss_pred ------CCCcHHHHHHH----------------------------HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 003991 445 ------NPSAGEAWKRR----------------------------GQARAALGESVEAIQDLSKALEFEPNS---ADILH 487 (781)
Q Consensus 445 ------~p~~~~~~~~l----------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 487 (781)
.+.....|..- +..+...+..+.|+..++..+...+.. .....
T Consensus 175 ~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL 254 (301)
T TIGR03362 175 SDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRL 254 (301)
T ss_pred CCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 003991 488 ERGIVNFKFKDFNAAVEDLSACVK 511 (781)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~a~~ 511 (781)
.++.++...|.++-|...|....+
T Consensus 255 ~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 255 LLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
No 496
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.18 E-value=6e+02 Score=25.49 Aligned_cols=29 Identities=7% Similarity=-0.035 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQ 443 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (781)
.+++.++|..|.+.++.+.+.+++.+.+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34566666666666666666666555554
No 497
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=28.42 E-value=1.2e+02 Score=19.08 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=17.8
Q ss_pred hHHHHHH--HHHHHcC-----CHHHHHHHHHHH
Q 003991 104 QAYILKG--CAFSALG-----RKEEALSVWEKG 129 (781)
Q Consensus 104 ~a~~~lg--~~~~~~g-----~~~~A~~~~~~a 129 (781)
+|.+.+| .+|..-. ++++|+..|++|
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~A 34 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHH
Confidence 5677777 5444443 478888888888
No 498
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=28.18 E-value=1.1e+02 Score=23.61 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=13.9
Q ss_pred hcCCHHHHHHHHHHHHhcc
Q 003991 48 SLRNWSKAIRILDSLLAQS 66 (781)
Q Consensus 48 ~~g~~~~A~~~y~~ai~~~ 66 (781)
..|+|++|+.+|..+|+..
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 4577777777777777765
No 499
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.05 E-value=3.9e+02 Score=23.03 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIKDLS 609 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~ 609 (781)
+..|...|..+...|++.+|.++|+
T Consensus 99 AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 99 ALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3334444444444444444444443
No 500
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=27.98 E-value=20 Score=40.00 Aligned_cols=96 Identities=18% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCC-CHHHHHH
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQ--SNPS-AGEAWKRRGQARAALGESVEAIQDLSKA--LEFEPN-SADILHE 488 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a--l~~~p~-~~~~~~~ 488 (781)
...++.-+..+...|++..|...+.+.-. +.+. ........+.+....|+++.|+..+... ..+.+. ....+..
T Consensus 24 ~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l 103 (536)
T PF04348_consen 24 AQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQL 103 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHH
Confidence 34455566777778888888877776652 2222 2344556677777778888888777631 111111 1334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003991 489 RGIVNFKFKDFNAAVEDLSACV 510 (781)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~a~ 510 (781)
.+.++...|++-+|...+-.+-
T Consensus 104 ~A~a~~~~~~~l~Aa~~~i~l~ 125 (536)
T PF04348_consen 104 RAQAYEQQGDPLAAARERIALD 125 (536)
T ss_dssp ----------------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHh
Confidence 6777777777766666554433
Done!