Query 003991
Match_columns 781
No_of_seqs 1159 out of 4623
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 10:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-40 5.4E-45 357.1 49.3 378 43-664 6-384 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-39 1.1E-43 346.9 47.6 313 380-699 66-378 (388)
3 2gw1_A Mitochondrial precursor 100.0 1.5E-37 5.2E-42 347.1 43.7 459 35-659 5-489 (514)
4 2xpi_A Anaphase-promoting comp 100.0 1.5E-35 5.3E-40 337.6 52.2 286 378-663 302-594 (597)
5 2xpi_A Anaphase-promoting comp 100.0 1.9E-36 6.4E-41 345.2 44.2 462 35-699 83-589 (597)
6 3fp2_A TPR repeat-containing p 100.0 1.8E-35 6E-40 332.4 42.4 445 34-656 23-499 (537)
7 2gw1_A Mitochondrial precursor 100.0 4.4E-34 1.5E-38 319.0 37.3 277 415-699 186-488 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 2.8E-32 9.6E-37 299.0 42.8 273 381-653 94-415 (450)
9 3fp2_A TPR repeat-containing p 100.0 3E-33 1E-37 314.2 35.7 262 427-696 214-498 (537)
10 3ieg_A DNAJ homolog subfamily 100.0 7.5E-32 2.6E-36 285.6 43.8 312 380-698 2-344 (359)
11 2y4t_A DNAJ homolog subfamily 100.0 1E-31 3.5E-36 294.6 41.3 324 369-699 14-368 (450)
12 3ieg_A DNAJ homolog subfamily 100.0 2.6E-30 8.9E-35 273.7 46.4 291 375-665 31-352 (359)
13 4g1t_A Interferon-induced prot 100.0 4.3E-30 1.5E-34 283.5 42.3 299 382-697 137-467 (472)
14 3hym_B Cell division cycle pro 100.0 7.4E-31 2.5E-35 274.6 33.8 292 372-663 13-314 (330)
15 4g1t_A Interferon-induced prot 100.0 6.5E-30 2.2E-34 282.1 36.7 386 42-659 57-470 (472)
16 3hym_B Cell division cycle pro 100.0 6.4E-29 2.2E-33 259.8 33.8 289 404-699 11-309 (330)
17 1fch_A Peroxisomal targeting s 100.0 2.9E-29 1E-33 267.0 28.3 298 390-688 34-358 (368)
18 4eqf_A PEX5-related protein; a 100.0 1.4E-28 4.9E-33 261.4 26.9 269 379-647 63-355 (365)
19 1fch_A Peroxisomal targeting s 100.0 3.3E-28 1.1E-32 258.9 28.4 268 381-649 64-360 (368)
20 4eqf_A PEX5-related protein; a 100.0 1.6E-28 5.6E-33 261.0 25.9 285 402-686 48-353 (365)
21 3cv0_A Peroxisome targeting si 100.0 2.9E-28 1E-32 254.4 27.1 273 380-652 20-319 (327)
22 2h6f_A Protein farnesyltransfe 100.0 3.8E-28 1.3E-32 255.9 26.2 260 374-663 90-363 (382)
23 2h6f_A Protein farnesyltransfe 100.0 1.1E-27 3.8E-32 252.3 27.0 231 366-597 116-365 (382)
24 2xm6_A Protein corresponding t 100.0 2E-24 6.7E-29 239.0 51.7 269 380-662 146-449 (490)
25 3cv0_A Peroxisome targeting si 100.0 1.6E-26 5.4E-31 241.2 29.2 275 415-689 21-315 (327)
26 2xm6_A Protein corresponding t 100.0 8.6E-24 2.9E-28 233.8 49.5 288 381-691 111-434 (490)
27 3uq3_A Heat shock protein STI1 99.9 3.9E-25 1.3E-29 222.0 28.2 236 415-659 5-253 (258)
28 3u4t_A TPR repeat-containing p 99.9 1.1E-25 3.6E-30 228.4 23.6 248 381-629 3-265 (272)
29 3uq3_A Heat shock protein STI1 99.9 4.2E-25 1.4E-29 221.7 27.2 241 380-629 4-257 (258)
30 3mkr_A Coatomer subunit epsilo 99.9 7.4E-25 2.5E-29 223.4 29.3 277 388-683 6-288 (291)
31 3u4t_A TPR repeat-containing p 99.9 1.7E-25 5.7E-30 226.9 23.4 246 414-660 2-262 (272)
32 2pl2_A Hypothetical conserved 99.9 3.6E-25 1.2E-29 215.7 23.3 198 412-610 2-210 (217)
33 2pl2_A Hypothetical conserved 99.9 6E-25 2E-29 214.2 24.7 198 447-645 3-211 (217)
34 2ooe_A Cleavage stimulation fa 99.9 6.1E-23 2.1E-27 229.4 44.3 222 432-653 255-497 (530)
35 2ooe_A Cleavage stimulation fa 99.9 4.7E-23 1.6E-27 230.3 42.7 311 377-691 117-494 (530)
36 3sf4_A G-protein-signaling mod 99.9 5E-25 1.7E-29 237.5 23.9 300 378-678 6-365 (406)
37 4a1s_A PINS, partner of inscut 99.9 2.3E-24 7.9E-29 232.9 21.2 275 378-652 45-376 (411)
38 3ro2_A PINS homolog, G-protein 99.9 5.4E-24 1.9E-28 222.5 22.3 272 381-652 5-336 (338)
39 3mkr_A Coatomer subunit epsilo 99.9 1.7E-22 5.8E-27 205.9 30.5 257 374-642 26-288 (291)
40 3e4b_A ALGK; tetratricopeptide 99.9 9.1E-23 3.1E-27 222.0 27.2 85 43-131 10-102 (452)
41 1ouv_A Conserved hypothetical 99.9 1.3E-21 4.6E-26 198.3 33.0 232 411-654 2-257 (273)
42 2q7f_A YRRB protein; TPR, prot 99.9 8.9E-23 3E-27 202.8 23.5 219 379-597 21-239 (243)
43 2q7f_A YRRB protein; TPR, prot 99.9 9.2E-23 3.1E-27 202.7 23.3 216 415-630 23-238 (243)
44 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.1E-23 1.7E-27 208.8 21.7 247 391-642 15-269 (275)
45 4a1s_A PINS, partner of inscut 99.9 2.8E-23 9.6E-28 224.4 20.5 283 413-696 46-379 (411)
46 3sf4_A G-protein-signaling mod 99.9 9.6E-23 3.3E-27 219.5 23.7 279 412-691 6-338 (406)
47 3ro2_A PINS homolog, G-protein 99.9 7.5E-23 2.6E-27 213.8 21.8 278 415-693 5-336 (338)
48 2ho1_A Type 4 fimbrial biogene 99.9 9E-22 3.1E-26 196.8 28.6 212 445-656 32-246 (252)
49 3vtx_A MAMA; tetratricopeptide 99.9 4E-22 1.4E-26 188.9 24.6 174 481-654 3-176 (184)
50 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.4E-22 8.3E-27 203.8 24.7 251 421-683 11-269 (275)
51 1ouv_A Conserved hypothetical 99.9 4E-21 1.4E-25 194.7 32.9 234 377-622 2-259 (273)
52 2vq2_A PILW, putative fimbrial 99.9 2.1E-21 7.2E-26 190.1 29.6 212 445-656 4-219 (225)
53 2vq2_A PILW, putative fimbrial 99.9 3.5E-21 1.2E-25 188.6 29.5 211 412-622 5-219 (225)
54 2ho1_A Type 4 fimbrial biogene 99.9 3E-21 1E-25 193.0 28.7 210 381-590 37-248 (252)
55 3e4b_A ALGK; tetratricopeptide 99.9 9.4E-22 3.2E-26 214.0 26.7 257 380-650 105-389 (452)
56 3vtx_A MAMA; tetratricopeptide 99.9 2.7E-21 9.1E-26 183.1 26.1 172 380-551 4-175 (184)
57 2ond_A Cleavage stimulation fa 99.9 1.5E-21 5E-26 201.6 25.3 250 398-659 33-303 (308)
58 4abn_A Tetratricopeptide repea 99.9 7.8E-22 2.7E-26 216.0 24.0 223 397-645 84-318 (474)
59 4abn_A Tetratricopeptide repea 99.9 5E-22 1.7E-26 217.5 22.0 209 464-673 83-312 (474)
60 2ond_A Cleavage stimulation fa 99.9 1.4E-20 4.9E-25 194.1 28.1 223 432-654 33-276 (308)
61 4i17_A Hypothetical protein; T 99.9 3.7E-20 1.3E-24 182.0 27.2 105 379-483 5-110 (228)
62 4i17_A Hypothetical protein; T 99.9 4.5E-20 1.5E-24 181.4 27.8 214 411-631 3-226 (228)
63 4gyw_A UDP-N-acetylglucosamine 99.9 8.1E-21 2.8E-25 215.6 21.4 175 479-653 5-179 (723)
64 3ulq_A Response regulator aspa 99.9 4.7E-20 1.6E-24 196.9 24.8 234 417-651 105-371 (383)
65 3nf1_A KLC 1, kinesin light ch 99.9 3.5E-21 1.2E-25 198.9 15.6 252 375-651 21-310 (311)
66 3ulq_A Response regulator aspa 99.9 2.8E-20 9.5E-25 198.7 22.1 302 380-690 11-369 (383)
67 4gyw_A UDP-N-acetylglucosamine 99.8 5.2E-20 1.8E-24 209.0 23.3 175 376-550 4-178 (723)
68 3dra_A Protein farnesyltransfe 99.8 7.1E-19 2.4E-23 177.4 28.2 242 390-659 41-299 (306)
69 3dra_A Protein farnesyltransfe 99.8 1E-18 3.6E-23 176.2 29.2 213 466-678 50-283 (306)
70 1xi4_A Clathrin heavy chain; a 99.8 3.9E-17 1.3E-21 187.6 45.1 242 381-644 1105-1380(1630)
71 3nf1_A KLC 1, kinesin light ch 99.8 9.9E-21 3.4E-25 195.6 14.5 207 376-582 64-309 (311)
72 1qqe_A Vesicular transport pro 99.8 3.2E-19 1.1E-23 182.3 20.5 205 492-698 46-278 (292)
73 1qqe_A Vesicular transport pro 99.8 5.6E-19 1.9E-23 180.5 22.2 239 399-656 3-277 (292)
74 3qky_A Outer membrane assembly 99.8 7.4E-19 2.5E-23 176.6 21.9 85 377-461 11-101 (261)
75 1hz4_A MALT regulatory protein 99.8 3.9E-18 1.3E-22 181.4 28.1 271 381-651 14-325 (373)
76 3qky_A Outer membrane assembly 99.8 7.7E-19 2.6E-23 176.5 21.2 199 408-606 8-253 (261)
77 2pzi_A Probable serine/threoni 99.8 7.3E-19 2.5E-23 201.1 22.7 185 377-565 390-582 (681)
78 1xi4_A Clathrin heavy chain; a 99.8 3.5E-16 1.2E-20 179.8 42.6 203 380-599 1194-1415(1630)
79 3q15_A PSP28, response regulat 99.8 3.8E-18 1.3E-22 181.6 23.8 233 417-650 103-367 (378)
80 2pzi_A Probable serine/threoni 99.8 9.1E-19 3.1E-23 200.3 20.1 187 444-634 389-583 (681)
81 3urz_A Uncharacterized protein 99.8 3.4E-18 1.2E-22 165.0 20.1 186 449-653 4-191 (208)
82 1hz4_A MALT regulatory protein 99.8 3.8E-17 1.3E-21 173.6 29.4 276 415-691 14-324 (373)
83 3as5_A MAMA; tetratricopeptide 99.8 8.6E-18 2.9E-22 158.6 21.5 172 483-654 8-179 (186)
84 3dss_A Geranylgeranyl transfer 99.8 1.2E-16 4.3E-21 161.6 30.3 254 389-662 37-318 (331)
85 3as5_A MAMA; tetratricopeptide 99.8 1.5E-17 5E-22 157.0 21.8 171 380-550 7-177 (186)
86 3dss_A Geranylgeranyl transfer 99.8 1.9E-16 6.4E-21 160.3 31.1 209 433-667 48-284 (331)
87 3q15_A PSP28, response regulat 99.8 4.2E-18 1.4E-22 181.3 20.1 233 381-614 101-365 (378)
88 3edt_B KLC 2, kinesin light ch 99.8 4.6E-18 1.6E-22 172.6 18.1 202 448-649 42-282 (283)
89 3urz_A Uncharacterized protein 99.8 1.2E-17 4.2E-22 161.1 20.0 185 380-583 3-189 (208)
90 4ga2_A E3 SUMO-protein ligase 99.8 6.4E-19 2.2E-23 160.0 10.0 139 523-661 3-142 (150)
91 4ga2_A E3 SUMO-protein ligase 99.8 1.6E-18 5.6E-23 157.3 10.7 139 423-561 5-144 (150)
92 2yhc_A BAMD, UPF0169 lipoprote 99.8 8.6E-17 2.9E-21 157.3 22.5 124 380-519 3-132 (225)
93 3edt_B KLC 2, kinesin light ch 99.8 6.2E-18 2.1E-22 171.6 14.5 224 392-615 12-282 (283)
94 2yhc_A BAMD, UPF0169 lipoprote 99.7 4.9E-17 1.7E-21 159.1 19.7 208 414-654 3-219 (225)
95 3q7a_A Farnesyltransferase alp 99.7 5.2E-16 1.8E-20 157.6 26.3 266 377-657 50-341 (349)
96 3q7a_A Farnesyltransferase alp 99.7 5.1E-16 1.7E-20 157.6 25.9 167 367-533 74-258 (349)
97 1b89_A Protein (clathrin heavy 99.7 6.7E-18 2.3E-22 175.1 8.9 261 392-691 14-274 (449)
98 4gco_A Protein STI-1; structur 99.7 1.5E-16 5.1E-21 139.3 16.3 118 543-660 5-122 (126)
99 2ifu_A Gamma-SNAP; membrane fu 99.7 1.1E-16 3.7E-21 164.8 16.1 207 394-654 4-229 (307)
100 2r5s_A Uncharacterized protein 99.7 7.7E-17 2.6E-21 151.0 13.0 164 483-647 6-172 (176)
101 1b89_A Protein (clathrin heavy 99.7 3.4E-17 1.2E-21 169.8 11.3 271 380-686 31-308 (449)
102 4gco_A Protein STI-1; structur 99.7 4.7E-16 1.6E-20 136.1 16.6 118 375-492 7-124 (126)
103 2r5s_A Uncharacterized protein 99.7 9.6E-17 3.3E-21 150.3 12.9 163 381-544 6-171 (176)
104 3qou_A Protein YBBN; thioredox 99.7 7.7E-16 2.6E-20 156.5 19.3 168 480-647 114-283 (287)
105 2ifu_A Gamma-SNAP; membrane fu 99.7 9.7E-16 3.3E-20 157.6 20.1 182 394-619 29-228 (307)
106 3gyz_A Chaperone protein IPGC; 99.7 7.5E-17 2.6E-21 145.4 10.0 120 534-653 19-138 (151)
107 3qou_A Protein YBBN; thioredox 99.7 1.2E-15 4.2E-20 155.0 19.4 168 378-545 114-283 (287)
108 2vsy_A XCC0866; transferase, g 99.7 9.9E-16 3.4E-20 172.4 19.3 164 463-626 3-169 (568)
109 4e6h_A MRNA 3'-END-processing 99.7 1.5E-12 5.1E-17 146.0 43.3 223 432-654 326-576 (679)
110 2vsy_A XCC0866; transferase, g 99.7 2E-15 6.9E-20 169.9 19.4 165 394-558 2-169 (568)
111 2hr2_A Hypothetical protein; a 99.7 8.7E-16 3E-20 136.0 12.6 117 34-150 9-149 (159)
112 4f3v_A ESX-1 secretion system 99.6 5.4E-16 1.8E-20 152.2 12.1 192 461-654 18-242 (282)
113 4f3v_A ESX-1 secretion system 99.6 7.5E-16 2.6E-20 151.2 12.1 207 382-591 8-247 (282)
114 4e6h_A MRNA 3'-END-processing 99.6 2E-12 6.8E-17 145.0 41.4 223 466-695 326-576 (679)
115 1p5q_A FKBP52, FK506-binding p 99.6 5.6E-17 1.9E-21 168.8 2.8 203 427-650 77-296 (336)
116 3gyz_A Chaperone protein IPGC; 99.6 1.3E-15 4.6E-20 137.1 11.4 111 439-549 26-136 (151)
117 2vgx_A Chaperone SYCD; alterna 99.6 2.8E-15 9.7E-20 135.3 13.6 120 536-655 6-125 (148)
118 3rjv_A Putative SEL1 repeat pr 99.6 3.3E-14 1.1E-18 137.3 21.9 141 449-595 18-172 (212)
119 3rjv_A Putative SEL1 repeat pr 99.6 1.6E-14 5.5E-19 139.4 19.3 178 466-651 3-200 (212)
120 2c2l_A CHIP, carboxy terminus 99.6 2.8E-15 9.5E-20 151.8 14.3 199 446-649 1-200 (281)
121 2c2l_A CHIP, carboxy terminus 99.6 3.8E-15 1.3E-19 150.7 13.1 196 414-614 3-199 (281)
122 4gcn_A Protein STI-1; structur 99.6 1.2E-14 4.2E-19 127.3 14.4 104 32-135 4-115 (127)
123 2fo7_A Synthetic consensus TPR 99.6 6.8E-14 2.3E-18 123.7 18.9 133 519-651 3-135 (136)
124 1p5q_A FKBP52, FK506-binding p 99.6 2.5E-16 8.5E-21 163.9 3.2 152 427-578 125-292 (336)
125 2xcb_A PCRH, regulatory protei 99.6 1.5E-14 5.2E-19 129.8 14.5 120 538-657 5-124 (142)
126 3rkv_A Putative peptidylprolyl 99.6 2.1E-14 7.1E-19 132.2 15.7 120 32-151 7-146 (162)
127 3mv2_B Coatomer subunit epsilo 99.6 9.2E-14 3.1E-18 138.2 19.8 255 381-655 14-289 (310)
128 2fo7_A Synthetic consensus TPR 99.6 2.4E-13 8.3E-18 120.1 20.2 133 383-515 3-135 (136)
129 1dce_A Protein (RAB geranylger 99.6 5.9E-14 2E-18 155.5 19.6 188 498-692 44-270 (567)
130 2vgx_A Chaperone SYCD; alterna 99.6 1E-14 3.5E-19 131.7 11.0 116 505-620 9-124 (148)
131 1dce_A Protein (RAB geranylger 99.6 1.2E-14 4.2E-19 160.9 13.6 206 392-617 39-270 (567)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.6E-13 5.6E-18 132.6 18.9 132 519-653 8-155 (213)
133 3upv_A Heat shock protein STI1 99.5 2.1E-13 7.1E-18 119.4 16.0 113 548-660 1-119 (126)
134 3upv_A Heat shock protein STI1 99.5 3E-13 1E-17 118.4 16.4 116 379-494 2-123 (126)
135 3sz7_A HSC70 cochaperone (SGT) 99.5 3.1E-13 1.1E-17 124.6 16.9 119 547-665 7-125 (164)
136 2xcb_A PCRH, regulatory protei 99.5 1.1E-13 3.6E-18 124.2 13.3 120 369-488 6-125 (142)
137 2e2e_A Formate-dependent nitri 99.5 1.9E-13 6.4E-18 127.9 14.8 128 528-655 21-151 (177)
138 2qfc_A PLCR protein; TPR, HTH, 99.5 7.5E-13 2.6E-17 135.0 20.2 165 485-649 77-267 (293)
139 2fbn_A 70 kDa peptidylprolyl i 99.5 2.7E-14 9.3E-19 136.4 8.7 88 552-639 89-176 (198)
140 1a17_A Serine/threonine protei 99.5 6.8E-13 2.3E-17 122.3 17.9 133 517-649 13-147 (166)
141 2qfc_A PLCR protein; TPR, HTH, 99.5 1.6E-12 5.5E-17 132.5 22.0 161 419-579 79-265 (293)
142 2e2e_A Formate-dependent nitri 99.5 1.7E-13 5.7E-18 128.2 13.2 130 391-520 20-152 (177)
143 1a17_A Serine/threonine protei 99.5 1.4E-12 4.8E-17 120.2 19.2 131 381-511 13-145 (166)
144 1hh8_A P67PHOX, NCF-2, neutrop 99.5 9.1E-13 3.1E-17 127.3 18.6 133 381-516 6-154 (213)
145 2fbn_A 70 kDa peptidylprolyl i 99.5 1.3E-13 4.3E-18 131.7 11.9 147 519-665 6-168 (198)
146 3mv2_B Coatomer subunit epsilo 99.5 2.9E-12 9.9E-17 127.4 20.5 224 382-623 46-291 (310)
147 2vyi_A SGTA protein; chaperone 99.5 1.4E-12 4.7E-17 114.5 15.8 123 377-499 8-130 (131)
148 3sz7_A HSC70 cochaperone (SGT) 99.5 1E-12 3.5E-17 121.0 15.5 116 377-492 7-122 (164)
149 2hr2_A Hypothetical protein; a 99.5 4.9E-13 1.7E-17 118.4 12.5 105 551-655 11-138 (159)
150 3u3w_A Transcriptional activat 99.5 1.2E-12 4.3E-17 133.4 17.4 127 523-649 121-267 (293)
151 2vyi_A SGTA protein; chaperone 99.5 7.8E-13 2.7E-17 116.1 13.9 117 518-634 13-129 (131)
152 2lni_A Stress-induced-phosphop 99.5 2.2E-12 7.5E-17 113.7 16.7 120 446-565 13-132 (133)
153 2lni_A Stress-induced-phosphop 99.5 1.2E-12 4E-17 115.5 14.8 123 376-498 11-133 (133)
154 3u3w_A Transcriptional activat 99.4 3.3E-12 1.1E-16 130.2 19.6 159 456-614 82-266 (293)
155 4gcn_A Protein STI-1; structur 99.4 4.2E-13 1.4E-17 117.5 11.0 109 585-693 8-116 (127)
156 1hxi_A PEX5, peroxisome target 99.4 8.3E-13 2.8E-17 114.4 12.7 102 553-654 19-120 (121)
157 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1.4E-13 4.9E-18 149.4 8.2 161 461-640 246-406 (457)
158 1na0_A Designed protein CTPR3; 99.4 7.8E-12 2.7E-16 108.6 17.5 112 519-630 11-122 (125)
159 3q49_B STIP1 homology and U bo 99.4 5.6E-12 1.9E-16 112.0 16.8 106 546-651 4-109 (137)
160 4b4t_Q 26S proteasome regulato 99.4 1E-11 3.6E-16 134.4 21.6 200 381-580 4-245 (434)
161 1na0_A Designed protein CTPR3; 99.4 1.4E-11 4.8E-16 106.9 18.1 109 383-491 11-119 (125)
162 3q49_B STIP1 homology and U bo 99.4 4.4E-12 1.5E-16 112.6 14.8 116 377-492 5-125 (137)
163 1hxi_A PEX5, peroxisome target 99.4 2.7E-12 9.1E-17 111.1 12.9 101 383-483 19-119 (121)
164 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 2.8E-13 9.4E-18 147.1 7.8 144 394-537 247-405 (457)
165 1elw_A TPR1-domain of HOP; HOP 99.4 1.6E-11 5.6E-16 105.3 17.6 113 381-493 4-116 (118)
166 1elw_A TPR1-domain of HOP; HOP 99.4 1.1E-11 3.8E-16 106.4 16.3 109 551-659 4-112 (118)
167 3rkv_A Putative peptidylprolyl 99.4 4E-12 1.4E-16 116.7 13.7 72 582-653 60-131 (162)
168 3gw4_A Uncharacterized protein 99.4 7.3E-12 2.5E-16 119.7 14.2 159 494-652 3-180 (203)
169 3gw4_A Uncharacterized protein 99.3 1.8E-11 6E-16 117.0 16.1 60 520-579 110-175 (203)
170 2xev_A YBGF; tetratricopeptide 99.3 2.7E-11 9.2E-16 106.2 15.7 111 383-493 4-120 (129)
171 2dba_A Smooth muscle cell asso 99.3 2.7E-11 9.3E-16 108.9 16.1 119 377-495 24-145 (148)
172 2dba_A Smooth muscle cell asso 99.3 4E-11 1.4E-15 107.8 16.3 117 411-527 24-143 (148)
173 2if4_A ATFKBP42; FKBP-like, al 99.3 3.2E-12 1.1E-16 132.8 10.2 157 481-654 177-334 (338)
174 2kck_A TPR repeat; tetratricop 99.3 5.9E-12 2E-16 107.1 9.8 106 547-652 2-110 (112)
175 1ihg_A Cyclophilin 40; ppiase 99.3 3.7E-11 1.3E-15 126.1 17.2 123 29-151 216-355 (370)
176 1wao_1 Serine/threonine protei 99.3 3E-12 1E-16 139.5 9.1 138 551-693 6-154 (477)
177 2xev_A YBGF; tetratricopeptide 99.3 5.8E-11 2E-15 104.0 15.6 111 417-527 4-120 (129)
178 4b4t_Q 26S proteasome regulato 99.3 3.4E-10 1.2E-14 122.5 24.4 200 415-614 4-245 (434)
179 1zu2_A Mitochondrial import re 99.3 1.1E-11 3.6E-16 109.5 9.7 53 602-654 63-126 (158)
180 1wao_1 Serine/threonine protei 99.3 1.3E-12 4.5E-17 142.3 4.7 136 381-516 6-154 (477)
181 1zu2_A Mitochondrial import re 99.3 9.7E-12 3.3E-16 109.8 9.2 109 528-657 13-142 (158)
182 1elr_A TPR2A-domain of HOP; HO 99.3 4.6E-11 1.6E-15 104.7 13.7 114 380-494 3-123 (131)
183 2kck_A TPR repeat; tetratricop 99.3 2.7E-11 9.1E-16 102.9 11.7 106 513-618 2-110 (112)
184 1elr_A TPR2A-domain of HOP; HO 99.3 3E-11 1E-15 105.9 12.3 26 623-648 83-108 (131)
185 1ihg_A Cyclophilin 40; ppiase 99.3 5.4E-11 1.9E-15 124.8 16.2 140 483-640 223-362 (370)
186 2if4_A ATFKBP42; FKBP-like, al 99.2 5.8E-12 2E-16 130.8 7.6 155 380-551 178-333 (338)
187 3k9i_A BH0479 protein; putativ 99.2 1.6E-11 5.4E-16 105.7 8.3 91 564-654 3-96 (117)
188 2uy1_A Cleavage stimulation fa 99.2 2E-08 6.8E-13 109.4 34.8 126 517-647 286-412 (493)
189 3ro3_A PINS homolog, G-protein 99.2 9E-11 3.1E-15 107.1 13.8 134 518-651 10-161 (164)
190 3k9i_A BH0479 protein; putativ 99.2 1.7E-11 5.8E-16 105.4 8.0 94 530-623 3-99 (117)
191 2uy1_A Cleavage stimulation fa 99.2 3.5E-08 1.2E-12 107.5 34.0 306 365-687 32-381 (493)
192 3ro3_A PINS homolog, G-protein 99.1 3.4E-10 1.2E-14 103.2 13.4 96 485-580 51-158 (164)
193 2l6j_A TPR repeat-containing p 99.0 1.1E-09 3.9E-14 92.6 10.1 100 585-685 4-103 (111)
194 2l6j_A TPR repeat-containing p 99.0 2.5E-10 8.6E-15 96.8 5.3 94 551-644 4-103 (111)
195 2kat_A Uncharacterized protein 99.0 3.7E-09 1.3E-13 90.3 12.3 85 569-653 3-87 (115)
196 1na3_A Designed protein CTPR2; 99.0 5.6E-09 1.9E-13 84.6 12.1 82 551-632 9-90 (91)
197 2kat_A Uncharacterized protein 99.0 4.9E-09 1.7E-13 89.5 11.6 81 536-616 4-84 (115)
198 1na3_A Designed protein CTPR2; 98.9 1.1E-08 3.6E-13 82.9 12.7 84 379-462 7-90 (91)
199 3ma5_A Tetratricopeptide repea 98.9 9.5E-09 3.3E-13 85.1 9.7 75 580-654 2-76 (100)
200 2kc7_A BFR218_protein; tetratr 98.8 4.9E-09 1.7E-13 86.6 6.9 89 556-652 5-94 (99)
201 2kc7_A BFR218_protein; tetratr 98.8 9.5E-09 3.2E-13 84.9 8.5 90 589-693 4-94 (99)
202 1klx_A Cysteine rich protein B 98.8 1E-07 3.4E-12 84.2 14.8 16 632-647 110-125 (138)
203 3ly7_A Transcriptional activat 98.8 5.9E-08 2E-12 98.1 14.6 158 473-655 184-346 (372)
204 1klx_A Cysteine rich protein B 98.8 2.1E-07 7.2E-12 82.1 15.8 16 598-613 110-125 (138)
205 3u64_A Protein TP_0956; tetrat 98.8 4.4E-07 1.5E-11 87.6 18.5 108 545-652 146-273 (301)
206 3ma5_A Tetratricopeptide repea 98.7 4.5E-08 1.5E-12 81.0 10.2 70 479-548 3-72 (100)
207 3ly7_A Transcriptional activat 98.7 3.1E-07 1.1E-11 92.8 17.3 147 380-551 195-344 (372)
208 3n71_A Histone lysine methyltr 98.7 6.2E-08 2.1E-12 104.5 13.0 123 527-649 319-465 (490)
209 3u64_A Protein TP_0956; tetrat 98.7 4.9E-07 1.7E-11 87.3 17.2 106 512-617 147-272 (301)
210 3n71_A Histone lysine methyltr 98.7 1.1E-07 3.6E-12 102.7 12.8 127 385-511 313-463 (490)
211 1pc2_A Mitochondria fission pr 98.5 9.9E-07 3.4E-11 76.8 11.2 93 567-659 14-111 (152)
212 3bee_A Putative YFRE protein; 98.4 1.2E-06 4E-11 70.7 9.7 73 581-653 2-77 (93)
213 3bee_A Putative YFRE protein; 98.4 1.5E-06 5E-11 70.1 9.8 71 377-447 2-75 (93)
214 3qww_A SET and MYND domain-con 98.4 3.7E-06 1.3E-10 89.1 14.9 95 45-139 307-423 (433)
215 1pc2_A Mitochondria fission pr 98.4 6.3E-06 2.2E-10 71.7 13.3 91 500-590 15-110 (152)
216 3qwp_A SET and MYND domain-con 98.3 5.9E-06 2E-10 87.7 15.7 100 41-140 292-413 (429)
217 2v5f_A Prolyl 4-hydroxylase su 98.3 6.4E-06 2.2E-10 68.2 11.0 76 585-660 5-87 (104)
218 2v5f_A Prolyl 4-hydroxylase su 98.3 1E-05 3.4E-10 67.0 11.9 78 379-456 3-87 (104)
219 4g26_A Pentatricopeptide repea 98.1 0.00049 1.7E-08 74.7 25.4 115 533-647 86-203 (501)
220 3qww_A SET and MYND domain-con 98.1 2.1E-05 7.2E-10 83.3 13.0 87 392-478 309-411 (433)
221 3qwp_A SET and MYND domain-con 98.0 2E-05 6.9E-10 83.6 11.5 62 552-613 330-399 (429)
222 4g26_A Pentatricopeptide repea 98.0 0.00078 2.7E-08 73.1 23.1 162 418-579 29-203 (501)
223 1nzn_A CGI-135 protein, fissio 97.9 9.6E-05 3.3E-09 61.7 11.6 96 566-661 16-116 (126)
224 4h7y_A Dual specificity protei 97.8 0.00053 1.8E-08 58.4 13.1 53 565-617 74-126 (161)
225 1nzn_A CGI-135 protein, fissio 97.7 0.00058 2E-08 57.0 12.8 88 502-589 20-112 (126)
226 4h7y_A Dual specificity protei 97.7 0.00075 2.6E-08 57.5 12.9 109 478-587 8-130 (161)
227 3ffl_A Anaphase-promoting comp 97.5 0.00056 1.9E-08 59.8 9.6 93 37-129 21-148 (167)
228 3ffl_A Anaphase-promoting comp 97.4 0.0012 4.2E-08 57.6 10.5 134 381-527 20-165 (167)
229 1y8m_A FIS1; mitochondria, unk 97.1 0.011 3.8E-07 50.1 12.9 79 582-660 36-118 (144)
230 3o48_A Mitochondria fission 1 97.0 0.0061 2.1E-07 51.0 10.3 79 584-662 39-121 (134)
231 3o48_A Mitochondria fission 1 96.9 0.021 7.3E-07 47.7 12.7 83 376-458 35-121 (134)
232 1y8m_A FIS1; mitochondria, unk 96.8 0.017 5.9E-07 48.9 11.6 80 378-457 36-119 (144)
233 1qsa_A Protein (soluble lytic 96.5 0.33 1.1E-05 53.4 22.7 123 524-647 221-347 (618)
234 3txn_A 26S proteasome regulato 96.2 0.19 6.5E-06 51.7 17.8 186 450-635 20-236 (394)
235 3kae_A CDC27, possible protein 96.1 0.59 2E-05 40.5 18.0 98 378-480 30-145 (242)
236 3txn_A 26S proteasome regulato 96.0 1.7 5.9E-05 44.5 24.9 130 381-510 19-166 (394)
237 4gns_B Protein CSD3, chitin bi 95.9 0.048 1.6E-06 61.0 12.3 54 590-643 342-395 (754)
238 3kae_A CDC27, possible protein 95.8 0.86 2.9E-05 39.5 19.3 189 446-651 30-240 (242)
239 3mkq_A Coatomer beta'-subunit; 95.6 0.85 2.9E-05 52.7 22.6 100 389-509 607-707 (814)
240 3mkq_A Coatomer beta'-subunit; 95.6 0.75 2.6E-05 53.1 21.8 44 494-542 663-706 (814)
241 4gns_B Protein CSD3, chitin bi 95.5 0.096 3.3E-06 58.6 12.9 115 394-509 261-397 (754)
242 3mkq_B Coatomer subunit alpha; 94.8 0.85 2.9E-05 40.6 14.3 108 380-508 7-114 (177)
243 1qsa_A Protein (soluble lytic 94.4 7.2 0.00025 42.8 27.6 269 403-688 57-347 (618)
244 4b4t_P 26S proteasome regulato 94.2 4.4 0.00015 42.7 21.2 183 428-612 29-245 (445)
245 2ff4_A Probable regulatory pro 94.1 0.45 1.5E-05 49.3 13.0 88 43-130 122-232 (388)
246 3mkq_B Coatomer subunit alpha; 94.0 1.2 4.2E-05 39.6 13.6 43 529-576 17-59 (177)
247 1zbp_A Hypothetical protein VP 94.0 1.1 3.7E-05 42.8 13.8 59 391-449 7-65 (273)
248 4b4t_P 26S proteasome regulato 93.5 6.5 0.00022 41.3 20.9 253 395-650 30-326 (445)
249 2ff4_A Probable regulatory pro 93.2 1.1 3.8E-05 46.3 14.1 111 524-647 122-233 (388)
250 1zbp_A Hypothetical protein VP 92.1 1.3 4.6E-05 42.1 11.5 120 527-653 7-134 (273)
251 1ya0_A SMG-7 transcript varian 92.0 0.84 2.9E-05 48.6 11.3 80 518-597 153-232 (497)
252 3spa_A Mtrpol, DNA-directed RN 91.8 2.6 8.8E-05 48.5 15.3 95 553-648 129-230 (1134)
253 1ya0_A SMG-7 transcript varian 91.5 1 3.4E-05 48.0 11.2 80 484-563 153-232 (497)
254 4fhn_B Nucleoporin NUP120; pro 91.1 3.7 0.00013 49.3 17.0 51 387-441 818-868 (1139)
255 3spa_A Mtrpol, DNA-directed RN 89.7 6 0.0002 45.6 15.7 98 416-513 128-231 (1134)
256 4fhn_B Nucleoporin NUP120; pro 89.6 17 0.00059 43.5 21.0 190 454-648 817-1050(1139)
257 4b4t_R RPN7, 26S proteasome re 89.5 1.3 4.6E-05 46.5 10.1 60 382-441 132-194 (429)
258 4b4t_R RPN7, 26S proteasome re 89.1 1.5 5E-05 46.1 10.0 97 450-546 132-237 (429)
259 4ady_A RPN2, 26S proteasome re 88.9 7.6 0.00026 44.4 15.9 250 392-646 385-656 (963)
260 4b4t_S RPN3, 26S proteasome re 88.7 0.94 3.2E-05 47.8 7.9 125 491-617 144-302 (523)
261 4b4t_S RPN3, 26S proteasome re 88.6 3 0.0001 44.0 11.6 126 457-584 144-303 (523)
262 4ady_A RPN2, 26S proteasome re 88.5 33 0.0011 39.3 20.7 245 381-633 413-679 (963)
263 3lpz_A GET4 (YOR164C homolog); 70.2 89 0.003 30.9 26.4 26 481-506 134-159 (336)
264 1wy6_A Hypothetical protein ST 68.8 25 0.00084 29.5 8.1 56 594-649 100-155 (172)
265 3ax2_A Mitochondrial import re 68.0 14 0.00048 27.1 5.9 32 41-72 22-53 (73)
266 4gq2_M Nucleoporin NUP120; bet 65.5 64 0.0022 37.6 14.3 94 557-654 816-933 (950)
267 4gq2_M Nucleoporin NUP120; bet 60.5 54 0.0018 38.2 12.4 94 523-620 816-933 (950)
268 2wpv_A GET4, UPF0363 protein Y 58.1 1.4E+02 0.0049 29.1 25.2 215 382-630 34-289 (312)
269 3esl_A Checkpoint serine/threo 57.5 52 0.0018 29.7 9.0 37 100-136 112-148 (202)
270 3lvg_A Clathrin heavy chain 1; 57.1 0.00011 3.8E-09 75.3 -31.0 215 379-610 52-287 (624)
271 1om2_A Protein (mitochondrial 56.5 28 0.00095 27.0 6.0 33 41-73 25-57 (95)
272 4a5x_A MITD1, MIT domain-conta 55.0 18 0.00062 27.6 4.8 30 36-65 16-45 (86)
273 2crb_A Nuclear receptor bindin 52.1 18 0.00061 27.6 4.1 27 104-130 16-42 (97)
274 2ijq_A Hypothetical protein; s 51.2 75 0.0026 27.5 8.6 63 381-443 32-103 (161)
275 3ax2_A Mitochondrial import re 49.0 43 0.0015 24.5 5.7 33 105-137 19-51 (73)
276 2w2u_A Hypothetical P60 katani 48.6 33 0.0011 25.9 5.3 24 42-65 25-48 (83)
277 2cwy_A Hypothetical protein TT 46.2 85 0.0029 24.3 7.5 62 623-687 5-66 (94)
278 3t5x_A PCI domain-containing p 43.4 48 0.0016 30.2 6.7 52 585-636 14-70 (203)
279 3t5v_B Nuclear mRNA export pro 42.1 58 0.002 34.0 7.8 59 556-614 181-249 (455)
280 2v6y_A AAA family ATPase, P60 41.8 44 0.0015 25.2 5.1 21 44-64 19-39 (83)
281 4a5x_A MITD1, MIT domain-conta 39.8 1.2E+02 0.0041 23.0 7.5 25 624-648 21-45 (86)
282 2cfu_A SDSA1; SDS-hydrolase, l 39.1 49 0.0017 36.6 7.2 57 72-128 452-511 (658)
283 3lvg_A Clathrin heavy chain 1; 38.9 0.00022 7.7E-09 73.2 -32.1 215 413-644 52-287 (624)
284 2crb_A Nuclear receptor bindin 38.9 31 0.001 26.4 3.6 25 72-96 18-42 (97)
285 2ijq_A Hypothetical protein; s 38.6 1.5E+02 0.005 25.7 8.5 68 621-688 34-103 (161)
286 2qx5_A Nucleoporin NIC96; mRNA 35.1 4.1E+02 0.014 29.1 13.5 21 387-407 300-320 (661)
287 3t5x_A PCI domain-containing p 35.0 78 0.0027 28.8 6.7 34 381-414 14-47 (203)
288 2qx5_A Nucleoporin NIC96; mRNA 33.9 3.7E+02 0.013 29.4 12.9 95 401-509 281-382 (661)
289 1wfd_A Hypothetical protein 15 33.5 57 0.0019 25.2 4.7 18 47-64 26-43 (93)
290 2vkj_A TM1634; membrane protei 31.6 55 0.0019 24.7 3.9 35 37-71 51-88 (106)
291 2w2u_A Hypothetical P60 katani 31.4 1.7E+02 0.0057 22.0 8.1 22 626-647 26-47 (83)
292 3lpz_A GET4 (YOR164C homolog); 30.7 4E+02 0.014 26.2 27.7 190 381-612 12-214 (336)
293 2v6x_A Vacuolar protein sortin 29.6 78 0.0027 23.9 4.8 20 46-65 23-42 (85)
294 2v6y_A AAA family ATPase, P60 29.5 1.8E+02 0.0061 21.8 7.7 21 627-647 19-39 (83)
295 2cwy_A Hypothetical protein TT 29.4 1.4E+02 0.0047 23.1 6.2 56 386-443 6-67 (94)
296 2ynq_A ESSB; membrane protein, 29.3 1.6E+02 0.0054 25.3 6.9 89 38-129 10-99 (161)
297 2rpa_A Katanin P60 ATPase-cont 28.8 52 0.0018 24.5 3.4 27 383-409 14-40 (78)
298 3t5v_B Nuclear mRNA export pro 28.0 1.4E+02 0.0048 31.0 8.0 64 521-584 180-254 (455)
299 2cfu_A SDSA1; SDS-hydrolase, l 28.0 99 0.0034 34.1 7.3 48 382-429 450-497 (658)
300 1om2_A Protein (mitochondrial 27.8 96 0.0033 24.0 4.9 32 623-654 24-55 (95)
301 2cpt_A SKD1 protein, vacuolar 27.4 91 0.0031 25.3 5.1 18 86-103 42-59 (117)
302 2vkj_A TM1634; membrane protei 26.7 1.3E+02 0.0045 22.7 5.2 33 379-411 51-83 (106)
303 2rpa_A Katanin P60 ATPase-cont 25.4 64 0.0022 24.0 3.4 28 621-648 14-41 (78)
304 2cpt_A SKD1 protein, vacuolar 25.1 2.6E+02 0.0088 22.6 7.4 21 628-648 27-47 (117)
305 1wfd_A Hypothetical protein 15 25.1 2.3E+02 0.008 21.7 7.1 21 627-647 23-43 (93)
306 3uzd_A 14-3-3 protein gamma; s 25.0 4.3E+02 0.015 24.7 13.5 46 602-647 148-202 (248)
307 3re2_A Predicted protein; meni 22.0 2.3E+02 0.0078 28.1 7.3 29 585-613 296-324 (472)
308 3ls0_A SLL1638 protein, PSBQ; 21.9 2E+02 0.0067 23.9 6.0 17 43-59 43-59 (133)
309 3re2_A Predicted protein; meni 21.0 2E+02 0.0067 28.5 6.6 28 103-130 296-323 (472)
310 3dza_A Uncharacterized putativ 20.6 2.3E+02 0.008 25.1 6.6 62 36-97 108-178 (191)
311 1wy6_A Hypothetical protein ST 20.5 3.9E+02 0.013 22.5 13.6 51 563-613 103-153 (172)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.6e-40 Score=357.12 Aligned_cols=378 Identities=19% Similarity=0.184 Sum_probs=358.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHH
Q 003991 43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (781)
Q Consensus 43 ~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 121 (781)
+..+++.|+|++|+..|.+++..+ .++..+..++.++++.|++++|+..+++++..+|.++.+|+.+|.++...|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 456789999999999999999999 5567788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcccccc
Q 003991 122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS 201 (781)
Q Consensus 122 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (781)
|+..|++++.+.
T Consensus 86 A~~~~~~al~~~-------------------------------------------------------------------- 97 (388)
T 1w3b_A 86 AIEHYRHALRLK-------------------------------------------------------------------- 97 (388)
T ss_dssp HHHHHHHHHHHC--------------------------------------------------------------------
T ss_pred HHHHHHHHHHcC--------------------------------------------------------------------
Confidence 999999993211
Q ss_pred cCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCCcc
Q 003991 202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF 281 (781)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (781)
T Consensus 98 -------------------------------------------------------------------------------- 97 (388)
T 1w3b_A 98 -------------------------------------------------------------------------------- 97 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhhHH
Q 003991 282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE 361 (781)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (781)
T Consensus 98 -------------------------------------------------------------------------------- 97 (388)
T 1w3b_A 98 -------------------------------------------------------------------------------- 97 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 003991 362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (781)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (781)
|..+..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++
T Consensus 98 ----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 98 ----------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2224567778999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003991 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (781)
Q Consensus 442 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 521 (781)
+..+|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++.++.
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 003991 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (781)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 601 (781)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...|.++.++..+|.++...|++
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 003991 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (781)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 664 (781)
++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997766665543
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.3e-39 Score=346.85 Aligned_cols=313 Identities=22% Similarity=0.261 Sum_probs=303.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (781)
++..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 36678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003991 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 539 (781)
...|++++|+..|++++...|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..
T Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH
Q 003991 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (781)
Q Consensus 540 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (781)
|++++..+|+++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++++..|.++
T Consensus 226 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHHHH
Q 003991 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK 699 (781)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 699 (781)
.++..+|.++...|++++|+..|++++++.|++.. +++.+|..+...|++++|+..|+++..++|++...|..
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~ 378 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-------AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH-------HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHh
Confidence 99999999999999999999999999999999987 55666777788999999999999999999999988754
No 3
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=347.12 Aligned_cols=459 Identities=17% Similarity=0.177 Sum_probs=372.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 003991 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (781)
Q Consensus 35 ~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 114 (781)
.+......+..++..|+|++|+..|++++..+|++..+.++|.+++++|++++|+..++++++++|++..+++.+|.++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 45566688889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCC
Q 003991 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK 194 (781)
Q Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (781)
.+|++++|+..|++++.+.|.........+...................+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------ 134 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDID------------------------------ 134 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
Confidence 99999999999999999998776554433332222111100010000000
Q ss_pred CcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccccc
Q 003991 195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN 274 (781)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (781)
.....+...... .. .......... .....
T Consensus 135 ------------------~~~~~~~~~~~~-~~----~~~~~~~~~~--------------------------~~~~~-- 163 (514)
T 2gw1_A 135 ------------------TATATPTELSTQ-PA----KERKDKQENL--------------------------PSVTS-- 163 (514)
T ss_dssp ---------------------------------------------CC--------------------------CCHHH--
T ss_pred ------------------HHHHhhhhccCC-hh----hHHHhhccCC--------------------------chhHH--
Confidence 000000000000 00 0000000000 00000
Q ss_pred ccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHh
Q 003991 275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM 354 (781)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (781)
...+..........
T Consensus 164 --------------------------------------------------~~~~~~~~~~~~~~---------------- 177 (514)
T 2gw1_A 164 --------------------------------------------------MASFFGIFKPELTF---------------- 177 (514)
T ss_dssp --------------------------------------------------HHHHHTTSCCCCCC----------------
T ss_pred --------------------------------------------------HHHHHhhcCHHHHH----------------
Confidence 00000000000000
Q ss_pred hHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--C-------CCCHHH
Q 003991 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN---EGKYASAISIFDQILK-----E--D-------PMYPEA 417 (781)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~~l~-----~--~-------p~~~~~ 417 (781)
..-..|.++..++..|..++. .|++++|+..|+++++ . + |.++.+
T Consensus 178 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 178 ------------------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp ------------------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred ------------------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 000125567888999998887 8999999999999999 5 4 445678
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 003991 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (781)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 497 (781)
++.+|.++...|++++|+..+++++...|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (781)
Q Consensus 498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (781)
++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHH------HHHHHHHHHHH---CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 578 LYIDKRFSK------AYHLRGLLLHG---LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 578 l~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
+...|.++. ++..+|.++.. .|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999888755 99999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHH
Q 003991 649 ELDSMEKFVLQ 659 (781)
Q Consensus 649 ~p~~~~~~~~~ 659 (781)
+|+++..+..+
T Consensus 479 ~~~~~~~~~~~ 489 (514)
T 2gw1_A 479 ARTMEEKLQAI 489 (514)
T ss_dssp CSSHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 99998876554
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-35 Score=337.60 Aligned_cols=286 Identities=15% Similarity=0.126 Sum_probs=276.3
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (781)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (781)
|.++..+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++...|.+..++..+|.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003991 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (781)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 537 (781)
+|...|++++|+.+|+++++..|.+..+|..++.++...|++++|+..|++++...|.+..++..++.++...|++++|+
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRF-SKAYHLRGLLLHGLGQHKKAIKDLSS 610 (781)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (781)
..|+++++..|.++.++..+|.++...|++++|+..|++++.. +|+. ..++..+|.++...|++++|+..|++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 5554 78999999999999999999999999
Q ss_pred hhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 003991 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (781)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 663 (781)
+++.+|+++.++..+|.+|...|++++|..+|+++++++|+++.++..++.+|
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999777766543
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-36 Score=345.19 Aligned_cols=462 Identities=12% Similarity=0.022 Sum_probs=384.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 003991 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (781)
Q Consensus 35 ~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 114 (781)
.....+..+..+++.|++++|+..|.+++...|++..++.+|.++.+.|++++|+..+++++.. |.++.+++.+|.+|.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHH
Confidence 4455567777889999999999999999988888888899999999999999999999999875 667889999999999
Q ss_pred HcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCC
Q 003991 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK 194 (781)
Q Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (781)
..|++++|+..|++. .|..... . .+ ..
T Consensus 162 ~~g~~~~A~~~~~~~---~~~~~~~-----------------~--~~-~~------------------------------ 188 (597)
T 2xpi_A 162 KLYDWQGALNLLGET---NPFRKDE-----------------K--NA-NK------------------------------ 188 (597)
T ss_dssp HTTCHHHHHHHHCSS---CTTC----------------------------------------------------------
T ss_pred HHhhHHHHHHHHhcc---CCccccc-----------------c--cc-cc------------------------------
Confidence 999999999877753 1111000 0 00 00
Q ss_pred CcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccccc
Q 003991 195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN 274 (781)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (781)
......+.
T Consensus 189 ---------------------------------------~~~~~~~~--------------------------------- 196 (597)
T 2xpi_A 189 ---------------------------------------LLMQDGGI--------------------------------- 196 (597)
T ss_dssp -----------------------------------------CCCSSC---------------------------------
T ss_pred ---------------------------------------cccccccc---------------------------------
Confidence 00000000
Q ss_pred ccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHh
Q 003991 275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM 354 (781)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (781)
. ........+...+...+.
T Consensus 197 ------------------------------------------------~-------------~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 197 ------------------------------------------------K-------------LEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp ------------------------------------------------C-------------HHHHHHHHHHHHHHHTTC
T ss_pred ------------------------------------------------c-------------hhHHHHHHHHHHHHHcCC
Confidence 0 000001111112222222
Q ss_pred hHHhhHHHHhhHHHHHHHhhccCCccHHHHHHH--------------------------------------HHHHHHcCC
Q 003991 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSR--------------------------------------GIAQVNEGK 396 (781)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------a~~~~~~g~ 396 (781)
..+.. ..+..+....|.++..+..+ +..+...|+
T Consensus 216 ~~~A~--------~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 287 (597)
T 2xpi_A 216 FDRAK--------ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287 (597)
T ss_dssp HHHHH--------HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH
T ss_pred HHHHH--------HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch
Confidence 11111 13333444455555554444 444557899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKAL 476 (781)
Q Consensus 397 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 476 (781)
+++|+..|+++++. |.+..++..+|.++...|++++|+..|++++...|.+..++..++.++...|++++|+..+++++
T Consensus 288 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 288 LRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999887 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH
Q 003991 477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556 (781)
Q Consensus 477 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 556 (781)
...|.+..++..+|.+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..|++++...|.+..++..
T Consensus 367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 446 (597)
T 2xpi_A 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF 446 (597)
T ss_dssp HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHH
T ss_pred hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc------CCCC-HHHHHHHHHHH
Q 003991 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI------DPSN-IECLYLRASCY 629 (781)
Q Consensus 557 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~ 629 (781)
+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+..|+++++. +|++ ..++..+|.+|
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 5654 78999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHHHH
Q 003991 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK 699 (781)
Q Consensus 630 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 699 (781)
...|++++|+..|+++++++|+++. +++.++..+...|++++|...|+++.+++|+....|..
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTNDAN-------VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSCCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 9999999999999999999999987 55666777788999999999999999999999887643
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.8e-35 Score=332.43 Aligned_cols=445 Identities=17% Similarity=0.139 Sum_probs=341.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003991 34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (781)
Q Consensus 34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 112 (781)
..+......+..++..|+|++|+.+|++++.++ .++..++++|.+++++|++++|+..|+++++++|+++.+++.+|.+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 456666788889999999999999999999999 6788899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCC
Q 003991 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENH 192 (781)
Q Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (781)
+..+|++++|+..|+ ++.+.|+.................+...+ ...
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~--------------------------- 149 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVL-----NEN--------------------------- 149 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHH-----HHH---------------------------
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHH-----HHH---------------------------
Confidence 999999999999996 87777766544221111111111110111 000
Q ss_pred CCCcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccc
Q 003991 193 NKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272 (781)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (781)
+.. .|...... .+....+..+...+
T Consensus 150 ------------------l~~---~~~~~~~~---~~~~~~~~~~~~~~------------------------------- 174 (537)
T 3fp2_A 150 ------------------LSK---DEGRGSQV---LPSNTSLASFFGIF------------------------------- 174 (537)
T ss_dssp ------------------CC----------CC---CCCHHHHHHHHHTS-------------------------------
T ss_pred ------------------HHh---Cccccccc---cchHhHHHHHHHhc-------------------------------
Confidence 000 00000000 00000000000000
Q ss_pred ccccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhh
Q 003991 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKW 352 (781)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (781)
.. .......
T Consensus 175 --------------------------------------------------~~-~~~~~~~-------------------- 183 (537)
T 3fp2_A 175 --------------------------------------------------DS-HLEVSSV-------------------- 183 (537)
T ss_dssp --------------------------------------------------CH-HHHHHTS--------------------
T ss_pred --------------------------------------------------Ch-HHHHHHH--------------------
Confidence 00 0000000
Q ss_pred HhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------H
Q 003991 353 DMLKETSNEAKRNKKFCVTRISKSKSISVDFRLS--------RGIAQVNEGKYASAISIFDQILKEDPMYPE-------A 417 (781)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~ 417 (781)
.......+........ .+......|++++|+..|+++++.+|+++. +
T Consensus 184 ------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 245 (537)
T 3fp2_A 184 ------------------NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA 245 (537)
T ss_dssp ------------------CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_pred ------------------hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHH
Confidence 0000000000111111 133344467899999999999999999865 5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 003991 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (781)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 497 (781)
+..+|.++...|++++|+..|++++..+|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Confidence 778889999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (781)
Q Consensus 498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (781)
++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHH------HHHHHHHHHHHC----------CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003991 578 LYIDKRFSK------AYHLRGLLLHGL----------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641 (781)
Q Consensus 578 l~~~~~~~~------~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 641 (781)
+...|.+.. .+..+|.++... |++++|+.+|+++++.+|+++.++..+|.+|..+|++++|+.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 998775433 366778899998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcHHHH
Q 003991 642 YDAALDLELDSMEKF 656 (781)
Q Consensus 642 ~~~al~~~p~~~~~~ 656 (781)
|+++++++|++.+..
T Consensus 485 ~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 485 FEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHC--CHHHH
T ss_pred HHHHHHhCCCcHHHH
Confidence 999999999998753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-34 Score=319.05 Aligned_cols=277 Identities=16% Similarity=0.144 Sum_probs=261.3
Q ss_pred HHHHHHHHHHHHH---ccCHHHHHHHHHHHHH-----h--C-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991 415 PEALIGRGTARAF---QRELEAAISDFTEAIQ-----S--N-------PSAGEAWKRRGQARAALGESVEAIQDLSKALE 477 (781)
Q Consensus 415 ~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 477 (781)
..+++.+|.++.. .|++++|+..|++++. . . |.+..++..+|.++...|++++|+..+++++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7778888888887 8999999999999999 5 3 44567899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Q 003991 478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557 (781)
Q Consensus 478 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 557 (781)
..|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus 266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 344 (514)
T 2gw1_A 266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344 (514)
T ss_dssp HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH------HHHHHHHHHHH
Q 003991 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE------CLYLRASCYHA 631 (781)
Q Consensus 558 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~ 631 (781)
|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++++...|+++. ++..+|.++..
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999888755 99999999999
Q ss_pred ---hCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHHHH
Q 003991 632 ---IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK 699 (781)
Q Consensus 632 ---~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 699 (781)
.|++++|+..|+++++++|+++. +++..|..+...|++++|+..|.++.+++|+..+.|..
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLDPRSEQ-------AKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHhCcccHH-------HHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence 99999999999999999999987 55667777788999999999999999999999988743
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.8e-32 Score=299.01 Aligned_cols=273 Identities=19% Similarity=0.247 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHccCHHHHHHHHHHHHHhC
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGR------------GTARAFQRELEAAISDFTEAIQSN 445 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~ 445 (781)
+.+++.+|.++...|++++|+..|+++++.+|.+. .++..+ |.++...|++++|+..|++++...
T Consensus 94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566678888888888888888888888888877 665544 666889999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH--
Q 003991 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL-- 523 (781)
Q Consensus 446 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l-- 523 (781)
|.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++...+..+
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 253 (450)
T 2y4t_A 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 253 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988877666
Q ss_pred ----------HHHHHHcCCHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003991 524 ----------GLALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589 (781)
Q Consensus 524 ----------a~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 589 (781)
|.++...|++++|+..|++++...|.++ ..+..+|.++...|++++|+..+++++...|+++.++.
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 9999999999999999999999999874 47889999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHH------------HHHhC-----CHHHHHHHHHH-HHhhccC
Q 003991 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC------------YHAIG-----EYREAIKDYDA-ALDLELD 651 (781)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g-----~~~~A~~~~~~-al~~~p~ 651 (781)
.+|.++...|++++|+..|+++++++|+++.++..++.+ |..+| +.+++.+.|++ +++..|+
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999955 44445 56778889986 8888888
Q ss_pred cH
Q 003991 652 SM 653 (781)
Q Consensus 652 ~~ 653 (781)
+.
T Consensus 414 ~~ 415 (450)
T 2y4t_A 414 NF 415 (450)
T ss_dssp GC
T ss_pred CC
Confidence 63
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=3e-33 Score=314.19 Aligned_cols=262 Identities=15% Similarity=0.105 Sum_probs=241.7
Q ss_pred HccCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 003991 427 FQRELEAAISDFTEAIQSNPSAGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499 (781)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 499 (781)
..|++++|+..|+++++.+|++.. ++..+|.++...|++++|+..|++++...|. ..++..+|.++...|++
T Consensus 214 a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCH
Confidence 346899999999999999999865 5778889999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (781)
Q Consensus 500 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 579 (781)
++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++.
T Consensus 293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH------HHHHHHHHHHHHh----------CCHHHHHHHHH
Q 003991 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI------ECLYLRASCYHAI----------GEYREAIKDYD 643 (781)
Q Consensus 580 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~A~~~~~ 643 (781)
..|+++.++..+|.++...|++++|+..|+++++..|++. ..++.+|.++... |++++|+.+|+
T Consensus 373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999877644 3467788999999 99999999999
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991 644 AALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (781)
Q Consensus 644 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 696 (781)
++++.+|+++. +++..|..+...|++++|+.+|+++..+.|...+.
T Consensus 453 ~a~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 453 KACELDPRSEQ-------AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHCTTCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHhCCCCHH-------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999987 56677777888999999999999999999988776
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=7.5e-32 Score=285.60 Aligned_cols=312 Identities=20% Similarity=0.205 Sum_probs=295.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (781)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991 460 AALGESVEAIQDLSKALEFEP---NSADILHER------------GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 524 (781)
...|++++|+..|+++++..| .++.++..+ |.++...|++++|+..+++++...|.++.++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 888888777 78999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH------------HHH
Q 003991 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH------------LRG 592 (781)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~la 592 (781)
.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++..++. .+|
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988654 448
Q ss_pred HHHHHCCCHHHHHHHHHHhhccCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 003991 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEI 668 (781)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 668 (781)
.++...|++++|+..+++++...|+++. ++..+|.++...|++++|+..|+++++.+|+++. +++..|.
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~~ 314 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN-------ALKDRAE 314 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH-------HHHHHHH
Confidence 8899999999999999999999999874 4667999999999999999999999999999987 6666777
Q ss_pred HHHHHhchhhHHHHHhhhcCCCcccHHHHH
Q 003991 669 ALYTASKINSEFCWFDIDGDIDPLFKEYWC 698 (781)
Q Consensus 669 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 698 (781)
.+...|++++|+.+|.++.+++|+....|.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 778899999999999999999999988763
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1e-31 Score=294.57 Aligned_cols=324 Identities=20% Similarity=0.196 Sum_probs=299.3
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (781)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (781)
.+..+....|.++..++.+|..++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++.+|++
T Consensus 14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 93 (450)
T 2y4t_A 14 GTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93 (450)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 44556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhC
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILHER------------GIVNFKFKDFNAAVEDLSACVKLD 513 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~ 513 (781)
..++..+|.++...|++++|+..|++++...|.+. .++..+ |.++...|++++|+..|++++...
T Consensus 94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999888 776655 666999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH--
Q 003991 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR-- 591 (781)
Q Consensus 514 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l-- 591 (781)
|.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|++...+..+
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 253 (450)
T 2y4t_A 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 253 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred ----------HHHHHHCCCHHHHHHHHHHhhccCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991 592 ----------GLLLHGLGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (781)
Q Consensus 592 ----------a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (781)
|.++...|++++|+..|++++...|+++. .+..+|.++...|++++|+..++++++++|+++.
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~--- 330 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN--- 330 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---
Confidence 99999999999999999999999999854 7899999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHHHH
Q 003991 658 LQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK 699 (781)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 699 (781)
+++.+|.++...|++++|+..|+++..++|+....|..
T Consensus 331 ----~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 368 (450)
T 2y4t_A 331 ----ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368 (450)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred ----HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence 56667777778999999999999999999999888644
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=2.6e-30 Score=273.71 Aligned_cols=291 Identities=20% Similarity=0.171 Sum_probs=271.7
Q ss_pred ccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CcHHH
Q 003991 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP---SAGEA 451 (781)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~ 451 (781)
...|.++..++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...| ++..+
T Consensus 31 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 110 (359)
T 3ieg_A 31 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHH
Confidence 344555778889999999999999999999999999999999999999999999999999999999999999 88888
Q ss_pred HHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991 452 WKRR------------GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519 (781)
Q Consensus 452 ~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 519 (781)
+..+ |.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.+
T Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 190 (359)
T 3ieg_A 111 ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8777 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-
Q 003991 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG------------HLTQFYQDLANSEKALECLQQVLYIDKRFSK- 586 (781)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 586 (781)
+..+|.++...|++++|+..++++++..|++..++. .+|.++...|++++|+..+++++...|+++.
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 270 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY 270 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 999999999999999999999999999999877654 4488899999999999999999999999874
Q ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 003991 587 ---AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (781)
Q Consensus 587 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 663 (781)
++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++..++..++.+.
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 46679999999999999999999999999999999999999999999999999999999999999998776665554
Q ss_pred HH
Q 003991 664 YQ 665 (781)
Q Consensus 664 ~~ 665 (781)
..
T Consensus 351 ~~ 352 (359)
T 3ieg_A 351 RL 352 (359)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.3e-30 Score=283.48 Aligned_cols=299 Identities=17% Similarity=0.074 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991 382 DFRLSRGIAQVN--EGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (781)
Q Consensus 382 ~~~~~~a~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (781)
..+..+|..+.. .++|++|+.+|+++++.+|+++.++..+|.++.. .+++++|+..++++++++|++..++..+|
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 344445555544 4679999999999999999999999999988654 56778999999999999999999999888
Q ss_pred HHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--
Q 003991 457 QARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI-- 530 (781)
Q Consensus 457 ~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-- 530 (781)
..+... +++++|+.++++++..+|..+.++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 776654 67889999999999999999999999999999999999999999999999999999999999988643
Q ss_pred -----------------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHH
Q 003991 531 -----------------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK---AYHL 590 (781)
Q Consensus 531 -----------------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~ 590 (781)
+.+++|+..+++++..+|....++..+|.++...|++++|+.+|++++...|++.. ++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999998887543 3566
Q ss_pred HHHH-HHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 003991 591 RGLL-LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIA 669 (781)
Q Consensus 591 la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 669 (781)
+|.+ +...|++++|+..|++++++.|++..... ....+...++++++.+|+++. +++.+|.+
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~-------~~~~LG~~ 439 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGADSE-------ALHVLAFL 439 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTT-------HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHH-------HHHHHHHH
Confidence 6654 45789999999999999999999765332 234556778899999999988 55556666
Q ss_pred HHHHhchhhHHHHHhhhcCCCcccHHHH
Q 003991 670 LYTASKINSEFCWFDIDGDIDPLFKEYW 697 (781)
Q Consensus 670 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 697 (781)
+...|++++|+.+|++++++.|.++..+
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHCC--------------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 7778999999999999999988777654
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.4e-31 Score=274.57 Aligned_cols=292 Identities=14% Similarity=0.091 Sum_probs=275.3
Q ss_pred HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 003991 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (781)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 451 (781)
..+...+.+++.++.+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++..+|.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 92 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS 92 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence 34455677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003991 452 WKRRGQARAALG-ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (781)
Q Consensus 452 ~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 530 (781)
+..+|.++...| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHCCCH
Q 003991 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID---------KRFSKAYHLRGLLLHGLGQH 601 (781)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~ 601 (781)
|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++... |..+.++..+|.++...|++
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999999886 66788999999999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 003991 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (781)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 663 (781)
++|+.+|+++++..|+++.++..+|.++..+|++++|+.+|+++++++|+++.++..++.++
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998666655543
No 15
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.98 E-value=6.5e-30 Score=282.08 Aligned_cols=386 Identities=13% Similarity=0.027 Sum_probs=245.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc---------c-chhhhhhHHHHHHhhhCHHHHHHHHHHHHhcC--------CCch
Q 003991 42 ELAKLCSLRNWSKAIRILDSLLAQS---------Y-EIQDICNRAFCYSQLELHKHVIRDCDKALQLD--------PTLL 103 (781)
Q Consensus 42 ~~~~~~~~g~~~~A~~~y~~ai~~~---------~-~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~--------p~~~ 103 (781)
.+.-++..|+|++|+++|++|+++. + ....+.|+|.+|..+|++++|+..+++++++. +..+
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 3445678999999999999999873 1 12348899999999999999999999999874 4567
Q ss_pred hHHHHHHHHHHHcC--CHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCC
Q 003991 104 QAYILKGCAFSALG--RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNA 181 (781)
Q Consensus 104 ~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (781)
..+..+|.++...| ++++|+..|++|+++.|+.+.....+..+.-... .. .
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~----~~------~----------------- 189 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD----NW------P----------------- 189 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HS------C-----------------
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----Cc------h-----------------
Confidence 78999998887654 7999999999998777776544322211100000 00 0
Q ss_pred CCCCcccccCCCCCcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCC
Q 003991 182 NDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGS 261 (781)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (781)
T Consensus 190 -------------------------------------------------------------------------------- 189 (472)
T 4g1t_A 190 -------------------------------------------------------------------------------- 189 (472)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCccccccccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCc
Q 003991 262 KSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDS 341 (781)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (781)
....
T Consensus 190 ---------------------------------------------------------------------------~~~~- 193 (472)
T 4g1t_A 190 ---------------------------------------------------------------------------PSQN- 193 (472)
T ss_dssp ---------------------------------------------------------------------------CCCC-
T ss_pred ---------------------------------------------------------------------------HHHH-
Confidence 0000
Q ss_pred hhhhhhhhhhhHhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHH
Q 003991 342 TESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEA 417 (781)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~ 417 (781)
. .. .+.+.+...|.++..+..+|..+.. .|++++|+.++++++..+|.++.+
T Consensus 194 ---------a-------l~--------~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~ 249 (472)
T 4g1t_A 194 ---------A-------ID--------PLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249 (472)
T ss_dssp ---------T-------HH--------HHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHH
T ss_pred ---------H-------HH--------HHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHH
Confidence 0 00 1222233455555555555544433 344555666666666666666666
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 003991 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (781)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 497 (781)
+..+|.++...|++++|+..+.++++..|++..++..+|.+|...+....+.. ....+......+
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~---------------~~~~~~~~~~~~ 314 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR---------------ENGMYGKRKLLE 314 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH---------------HHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666655543221111100 001111112234
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH---HHHHHHHH-HHHcCCHHHHHHH
Q 003991 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE---AWGHLTQF-YQDLANSEKALEC 573 (781)
Q Consensus 498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~la~~-~~~~g~~~~A~~~ 573 (781)
.+++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++...|++.. ++..+|.+ +...|++++|+..
T Consensus 315 ~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5788999999999999999999999999999999999999999999998876643 45666654 4568999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 574 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
|++++.+.|.+...... ...+...+++++..+|+++.++..+|.+|..+|++++|+++|++|+++.|.+|
T Consensus 395 y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 395 FIEGVKINQKSREKEKM----------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHSCCCCHHHHHH----------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHhcCcccHHHHHH----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 99999999987654332 34456778889999999999999999999999999999999999999999988
Q ss_pred HHHHHH
Q 003991 654 EKFVLQ 659 (781)
Q Consensus 654 ~~~~~~ 659 (781)
.+...+
T Consensus 465 ~a~~~~ 470 (472)
T 4g1t_A 465 SASSWN 470 (472)
T ss_dssp ------
T ss_pred cHhhcC
Confidence 865443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=6.4e-29 Score=259.79 Aligned_cols=289 Identities=14% Similarity=0.047 Sum_probs=268.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003991 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483 (781)
Q Consensus 404 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 483 (781)
....+...|.++..+..+|..++..|++++|+..|++++..+|.+..++..++.++...|++++|+..++++++.+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 34556667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 003991 484 DILHERGIVNFKFK-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562 (781)
Q Consensus 484 ~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 562 (781)
.++..+|.++...| ++++|+.++++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC---------CCCHHHHHHHHHHHHHhC
Q 003991 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID---------PSNIECLYLRASCYHAIG 633 (781)
Q Consensus 563 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g 633 (781)
..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++... |..+.++..+|.++...|
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999875 666789999999999999
Q ss_pred CHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHHHH
Q 003991 634 EYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK 699 (781)
Q Consensus 634 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 699 (781)
++++|+.+|+++++++|+++. +++..|..+...|++++|+.+|.++..++|+....|..
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 309 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNAS-------TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTM 309 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSH-------HHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccchH-------HHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHH
Confidence 999999999999999999988 55666777778899999999999999999999887644
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=2.9e-29 Score=266.97 Aligned_cols=298 Identities=20% Similarity=0.215 Sum_probs=260.3
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 003991 390 AQVNEGKYASAIS-IFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (781)
Q Consensus 390 ~~~~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 464 (781)
++...|+|++|+. .|++++...|.++ ..++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4566789999999 9999998888764 5689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHH
Q 003991 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT----------------YLGLALS 528 (781)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~----------------~la~~~~ 528 (781)
+++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+...+. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999999999999998876654 466666
Q ss_pred HcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991 529 SIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 606 (781)
..|++++|+..+++++...|. .+.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH----HHHHHHHHHHHHHHHHhchhhHHHH
Q 003991 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV----LQCLAFYQKEIALYTASKINSEFCW 682 (781)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~ 682 (781)
.|++++..+|+++.++..+|.++..+|++++|+.+|++++++.|++..... ....++...+.++...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 999999999999999999999999999999999999999999998821100 0022566777778888999999988
Q ss_pred HhhhcC
Q 003991 683 FDIDGD 688 (781)
Q Consensus 683 ~~~~~~ 688 (781)
+.++.+
T Consensus 353 ~~~~l~ 358 (368)
T 1fch_A 353 DARDLS 358 (368)
T ss_dssp HTTCHH
T ss_pred HHHHHH
Confidence 876544
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=1.4e-28 Score=261.40 Aligned_cols=269 Identities=16% Similarity=0.178 Sum_probs=241.8
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (781)
.++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 003991 459 RAALGESVEAIQDLSKALEFEPNSADILHER----------GIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLA 526 (781)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~ 526 (781)
+...|++++|+..|+++++..|.+...+..+ |.++...|++++|+.++++++...|. ++.++..+|.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999999999999998766555544 89999999999999999999999999 89999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (781)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 606 (781)
+...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 607 DLSSGLGIDPS------------NIECLYLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 607 ~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
+|++++++.|+ +..+|..++.++..+|+.+.|.....+.+.
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999998876 357889999999999999988877766433
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=3.3e-28 Score=258.86 Aligned_cols=268 Identities=19% Similarity=0.223 Sum_probs=256.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
...++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|.+..++..+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 003991 461 ALGESVEAIQDLSKALEFEPNSADILH----------------ERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTY 522 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~ 522 (781)
..|++++|+..+++++...|.+...+. .++.++ ..|++++|+..+++++...|. ++.++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 999999999999999999998876654 466666 999999999999999999999 8999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 003991 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (781)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 602 (781)
+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|+++
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 603 KAIKDLSSGLGIDPSN-----------IECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 603 ~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
+|+.+|++++...|++ +.+|..+|.++..+|++++|..+++++++..
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 9999999999999887 8999999999999999999999998877653
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=1.6e-28 Score=260.98 Aligned_cols=285 Identities=19% Similarity=0.187 Sum_probs=246.8
Q ss_pred HHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991 402 SIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477 (781)
Q Consensus 402 ~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 477 (781)
..+.+.+...+.++ ..++.+|.++...|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444444444 45999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHhhC
Q 003991 478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY----------LGLALSSIGEYKKAEEAHLKAIQLD 547 (781)
Q Consensus 478 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~----------la~~~~~~g~~~~A~~~~~~al~~~ 547 (781)
.+|.+..++..+|.++...|++++|+..+++++...|.+...+.. +|.++...|++++|+..+++++...
T Consensus 128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999887665554 4999999999999999999999999
Q ss_pred cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 003991 548 RN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625 (781)
Q Consensus 548 ~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 625 (781)
|. ++.++..+|.++...|++++|+.+|++++...|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus 208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 287 (365)
T 4eqf_A 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL 287 (365)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 99 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhccCcHHH-----HHHHHHHHHHHHHHHHHHhchhhHHHHHhhh
Q 003991 626 ASCYHAIGEYREAIKDYDAALDLELDSMEK-----FVLQCLAFYQKEIALYTASKINSEFCWFDID 686 (781)
Q Consensus 626 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 686 (781)
|.+|..+|++++|+.+|++++++.|++... ......++...+.++..+|+.+.+.....+.
T Consensus 288 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 288 GISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999999999999999999999999985432 1122446777788888888888888776554
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=2.9e-28 Score=254.41 Aligned_cols=273 Identities=13% Similarity=0.126 Sum_probs=257.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (781)
++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+.++++++...|.+..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991 460 AALGESVEAIQDLSKALEFEPNSADILHER--------------GI-VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 524 (781)
...|++++|+..+++++...|.+...+..+ +. ++...|++++|+..+++++...|.++.++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 999999999999999999999988777776 66 688999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003991 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604 (781)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 604 (781)
.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991 605 IKDLSSGLGIDPS------------NIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (781)
Q Consensus 605 ~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (781)
+..|++++...|+ ++.++..+|.++..+|++++|...++++++..|+.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 9999999999999 78999999999999999999999999988877654
No 22
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=3.8e-28 Score=255.87 Aligned_cols=260 Identities=12% Similarity=0.096 Sum_probs=181.2
Q ss_pred hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCcHHHH
Q 003991 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE-LEAAISDFTEAIQSNPSAGEAW 452 (781)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 452 (781)
+...|..+.++..+|.++...|++++|+..|+++++.+|++..+|+.+|.++...|+ +++|+.+|++++.++|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 566777777777777777777777777777777777777777777777777777775 7777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Q 003991 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IG 531 (781)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g 531 (781)
+.+|.++..+|++++|+..|++++.++|++..+|+.+|.++...|++++|+.+|+++++++|++..+|.++|.++.. .|
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777777777777777777777777777777666666666666666 33
Q ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Q 003991 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG--QHKKAIKDLS 609 (781)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~ 609 (781)
.+++|+ .+.++.+|++++.++|++..+|+.+|.++...| ++++|++.+.
T Consensus 250 ~~~eA~-----------------------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~ 300 (382)
T 2h6f_A 250 YNDRAV-----------------------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLL 300 (382)
T ss_dssp SCSHHH-----------------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred cchHHH-----------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHH
Confidence 334442 122346666666666666666666666666666 4667777666
Q ss_pred HhhccCCCCHHHHHHHHHHHHHhC--------C-HHHHHHHHHHH-HhhccCcHHHHHHHHHHH
Q 003991 610 SGLGIDPSNIECLYLRASCYHAIG--------E-YREAIKDYDAA-LDLELDSMEKFVLQCLAF 663 (781)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~ 663 (781)
++ +.+|+++.++..+|.+|..+| + +++|+.+|+++ ++++|.....|..++..+
T Consensus 301 ~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 301 DL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred Hh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 66 667777777777777777663 2 46777777777 777777776555554443
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=1.1e-27 Score=252.29 Aligned_cols=231 Identities=16% Similarity=0.146 Sum_probs=198.1
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 003991 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGK-YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (781)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (781)
....+..++...|.+..+|+.+|.++...|+ +++|+..|+++++.+|++..+|+.+|.++...|++++|+..|++++.+
T Consensus 116 Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l 195 (382)
T 2h6f_A 116 AFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 195 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445677888999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHhCCCCHH
Q 003991 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAA-----VEDLSACVKLDKENKS 518 (781)
Q Consensus 445 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A-----~~~~~~a~~~~p~~~~ 518 (781)
+|++..+|+.+|.++..+|++++|+.+|+++++++|.+..+|+.+|.++.. .|.+++| +.+|++++.++|++..
T Consensus 196 dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~ 275 (382)
T 2h6f_A 196 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 275 (382)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999999999999999999999999999999999999 5554777 4778888888888888
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HhhCCCCHH
Q 003991 519 AYTYLGLALSSIG--EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA--------N-SEKALECLQQV-LYIDKRFSK 586 (781)
Q Consensus 519 ~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~ 586 (781)
+|.+++.++...| ++++|++.+.++ +.+|+++.++..+|.+|...| + +++|+.+|+++ ++++|....
T Consensus 276 a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~ 354 (382)
T 2h6f_A 276 AWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKE 354 (382)
T ss_dssp HHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHH
Confidence 8888888887777 577777777776 777777777777777777663 2 46677777776 667776666
Q ss_pred HHHHHHHHHHH
Q 003991 587 AYHLRGLLLHG 597 (781)
Q Consensus 587 ~~~~la~~~~~ 597 (781)
.|..++..+..
T Consensus 355 ~w~~~~~~l~~ 365 (382)
T 2h6f_A 355 YWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=2e-24 Score=238.98 Aligned_cols=269 Identities=13% Similarity=-0.002 Sum_probs=241.1
Q ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHH
Q 003991 380 SVDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEA 451 (781)
Q Consensus 380 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 451 (781)
++.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+
T Consensus 146 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 221 (490)
T 2xm6_A 146 RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELG 221 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHH
Confidence 35677788888887 88999999999999886 579999999999998 89999999999999885 56889
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003991 452 WKRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYL 523 (781)
Q Consensus 452 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l 523 (781)
++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++.+. .++.+++.+
T Consensus 222 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~L 297 (490)
T 2xm6_A 222 QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYL 297 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 9999999997 89999999999999876 468899999999998 89999999999999865 678899999
Q ss_pred HHHHHHc-----CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003991 524 GLALSSI-----GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA---NSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (781)
Q Consensus 524 a~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 595 (781)
|.++... +++++|+.+|+++++. .++.+++.+|.+|...| ++++|+.+|+++++. .++.+++.+|.+|
T Consensus 298 g~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 373 (490)
T 2xm6_A 298 AHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNAL 373 (490)
T ss_dssp HHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 9999998 9999999999999986 46789999999999866 899999999999987 6799999999999
Q ss_pred HH----CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhcc---CcHHHHHHHHHH
Q 003991 596 HG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLEL---DSMEKFVLQCLA 662 (781)
Q Consensus 596 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~ 662 (781)
.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++..| +++.+...++..
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 99 89999999999999986 468999999999999 8999999999999999994 466655555443
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=1.6e-26 Score=241.20 Aligned_cols=275 Identities=16% Similarity=0.175 Sum_probs=248.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (781)
...++.+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 003991 495 KFKDFNAAVEDLSACVKLDKENKSAYTYL--------------GL-ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (781)
Q Consensus 495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 559 (781)
..|++++|+..+++++...|.+...+..+ +. ++...|++++|+..+++++...|.++.++..+|.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 99999999999999999999988777666 66 6888999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 003991 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (781)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 639 (781)
++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcHHHHHH-----HHHHHHHHHHHHHHHhchhhHHHHHhhhcCC
Q 003991 640 KDYDAALDLELDSMEKFVL-----QCLAFYQKEIALYTASKINSEFCWFDIDGDI 689 (781)
Q Consensus 640 ~~~~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 689 (781)
.+|++++++.|+....... ...++...+.++...|++++|...++++...
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999999999992110000 1236667777888889999999998776654
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=8.6e-24 Score=233.79 Aligned_cols=288 Identities=16% Similarity=0.062 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHH
Q 003991 381 VDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAW 452 (781)
Q Consensus 381 ~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 452 (781)
+.+++.+|..+.. .+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 3456667888887 88999999999999875 579999999999998 88999999999999986 578999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991 453 KRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (781)
Q Consensus 453 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la 524 (781)
+.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 262 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 999999999 89999999999999986 468899999999997 89999999999999875 5688999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003991 525 LALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-----ANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (781)
Q Consensus 525 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 595 (781)
.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|+++.+. .++.+++.+|.++
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y 338 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIY 338 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 99999 99999999999999876 5788999999999998 9999999999999876 5688999999999
Q ss_pred HHCC---CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 003991 596 HGLG---QHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEI 668 (781)
Q Consensus 596 ~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 668 (781)
...| ++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++.. ++. +++.+|.
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~-------a~~~Lg~ 407 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSA-------AQVQLGE 407 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH-------HHHHHHH
T ss_pred HhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHH-------HHHHHHH
Confidence 9877 899999999999987 679999999999999 899999999999999864 455 5556666
Q ss_pred HHHH----HhchhhHHHHHhhhcCCCc
Q 003991 669 ALYT----ASKINSEFCWFDIDGDIDP 691 (781)
Q Consensus 669 ~~~~----~~~~~~A~~~~~~~~~~~p 691 (781)
.+.. .+++++|+.+|+++.+..|
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 6666 7899999999999999883
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.9e-25 Score=221.99 Aligned_cols=236 Identities=18% Similarity=0.170 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------ADILH 487 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 487 (781)
+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++...|.. +.++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3445555555555555555555555555555 555555555555555555555555555555555443 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Q 003991 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567 (781)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 567 (781)
.+|.++...|++++|+.++++++...|. +.++...|++++|+..+++++..+|..+.++..+|.++...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 6666666666666666666666666655 34566777888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 568 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
++|+..|++++...|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+.+|+++++
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888888888888999999999999999999999988898888999999999999999999999999999
Q ss_pred hc------cCcHHHHHHH
Q 003991 648 LE------LDSMEKFVLQ 659 (781)
Q Consensus 648 ~~------p~~~~~~~~~ 659 (781)
++ |++...+..+
T Consensus 236 ~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHHHHHTTTTHHHHHHHH
T ss_pred hChhhcCCCchHHHHHHH
Confidence 88 7776654433
No 28
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=1.1e-25 Score=228.39 Aligned_cols=248 Identities=16% Similarity=0.150 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRG 456 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 456 (781)
++.++..|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.+ ..++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 455666677777777777777777777777777666777777777777777777777777766 3322 33466666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 536 (781)
.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+.++++++..+|.++.++..+|......+++++|
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666333334466666
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhC---CC-----CHHHHHHHHHHHHHCCCHHHHH
Q 003991 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYID---KR-----FSKAYHLRGLLLHGLGQHKKAI 605 (781)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---~~-----~~~~~~~la~~~~~~g~~~~A~ 605 (781)
+..|+++++..|++..++..+|.++...|+ +++|+..|++++... |+ ...++..+|.++...|++++|+
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666666666666665555 555666665555543 22 1234445555555555555555
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHH
Q 003991 606 KDLSSGLGIDPSNIECLYLRASCY 629 (781)
Q Consensus 606 ~~~~~al~~~p~~~~~~~~la~~~ 629 (781)
.+|+++++++|+++.++-.++.+.
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHhcCccHHHHHHHhhhhh
Confidence 555555555555555554444443
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.2e-25 Score=221.74 Aligned_cols=241 Identities=17% Similarity=0.161 Sum_probs=229.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------HHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------GEAW 452 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 452 (781)
.++.++.+|..++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+.++.+++...|.+ ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 47889999999999999999999999999999 899999999999999999999999999999998876 7899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003991 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (781)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 532 (781)
..+|.++...|++++|+.+|++++...|. +.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999986 4567778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (781)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (781)
+++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|+++.++..+|.++...|++++|+.+|++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC------CCCHHHHHHHHHHH
Q 003991 613 GID------PSNIECLYLRASCY 629 (781)
Q Consensus 613 ~~~------p~~~~~~~~la~~~ 629 (781)
+.. |++..++..++.++
T Consensus 235 ~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HhChhhcCCCchHHHHHHHHHhh
Confidence 999 88888888777653
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=7.4e-25 Score=223.44 Aligned_cols=277 Identities=12% Similarity=0.010 Sum_probs=242.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 003991 388 GIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (781)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (781)
....+..|+|..|+..++++...+|++ .+....++.+|...|+++.|+..++. .+|....++..++..+...++++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 456788999999999999887777776 35778899999999999999998866 25666778889999999999999
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 467 EAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (781)
Q Consensus 467 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (781)
+|+..+++++.. +|+++.+++.+|.++...|++++|+..+++ |.+..++..+|.++..+|++++|+..+++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999876 699999999999999999999999999998 8999999999999999999999999999999
Q ss_pred hhCcccHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991 545 QLDRNFLEAWGHLT--QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (781)
Q Consensus 545 ~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (781)
+.+|++.......+ .++...|++++|+..|++++...|+++.+++.+|.++..+|++++|+..|++++..+|+++.++
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99998865444333 3344458999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHH-HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 003991 623 YLRASCYHAIGEYRE-AIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWF 683 (781)
Q Consensus 623 ~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 683 (781)
.++|.++...|++.+ +..+++++++++|+++.+.- .....+.|+++...|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d-----------~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE-----------YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH-----------HHHHHHHHHHHHHHc
Confidence 999999999999976 56899999999999987432 123445566665555
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=1.7e-25 Score=226.90 Aligned_cols=246 Identities=15% Similarity=0.060 Sum_probs=226.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 003991 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHER 489 (781)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 489 (781)
++..++.+|.+++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++. .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999 4433 4569999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Q 003991 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569 (781)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 569 (781)
|.++...|++++|+.+++++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|...+..+++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999955555679999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHhhccC---CC-----CHHHHHHHHHHHHHhCCHHHH
Q 003991 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGID---PS-----NIECLYLRASCYHAIGEYREA 638 (781)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A 638 (781)
|+..|++++...|++..++..+|.++...|+ +++|+..|+++++.. |+ ...++..+|.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999 999999999999875 44 236899999999999999999
Q ss_pred HHHHHHHHhhccCcHHHHHHHH
Q 003991 639 IKDYDAALDLELDSMEKFVLQC 660 (781)
Q Consensus 639 ~~~~~~al~~~p~~~~~~~~~~ 660 (781)
+.+|+++++++|+++.++-.++
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHHhcCccHHHHHHHhh
Confidence 9999999999999998665443
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=3.6e-25 Score=215.72 Aligned_cols=198 Identities=17% Similarity=0.138 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (781)
Q Consensus 412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (781)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 003991 492 VNFKF-----------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (781)
Q Consensus 492 ~~~~~-----------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 560 (781)
++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 66655 555555555555555555555555555555555555555555555555544 444444555555
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (781)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (781)
+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555544444444444444444444444444444443
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=6e-25 Score=214.19 Aligned_cols=198 Identities=20% Similarity=0.181 Sum_probs=92.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003991 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (781)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 526 (781)
.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHc-----------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003991 527 LSSI-----------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (781)
Q Consensus 527 ~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 595 (781)
+... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++ +++.++..+|.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~ 161 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHH
Confidence 5554 555555555555555555555555555555555555555555555555444 4445555555555
Q ss_pred HHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (781)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (781)
...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++
T Consensus 162 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555444443
No 34
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=6.1e-23 Score=229.36 Aligned_cols=222 Identities=9% Similarity=-0.011 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Q 003991 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAA-------LGESV-------EAIQDLSKALE-FEPNSADILHERGIVNFKF 496 (781)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 496 (781)
..++..|++++...|.++.+|+.+|..+.. .|+++ +|+..|+++++ ..|++..+|..+|.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999986 79987 99999999997 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH-HHHcCCHHHHHHHH
Q 003991 497 KDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANSEKALECL 574 (781)
Q Consensus 497 ~~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~ 574 (781)
|++++|...|++++...|.++ .+|..++.++...|++++|+..|.++++..|.....+...+.+ +...|++++|..+|
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999999999999999985 6999999999999999999999999999988877777766665 34689999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (781)
Q Consensus 575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (781)
+++++..|+++.+|..++.++...|++++|..+|++++...|.++. +|...+......|+.+.+..++.++++..|
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999998766544 888889999999999999999999999999
Q ss_pred CcH
Q 003991 651 DSM 653 (781)
Q Consensus 651 ~~~ 653 (781)
+++
T Consensus 495 ~~~ 497 (530)
T 2ooe_A 495 EEY 497 (530)
T ss_dssp HHH
T ss_pred hhc
Confidence 654
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=4.7e-23 Score=230.28 Aligned_cols=311 Identities=12% Similarity=0.004 Sum_probs=240.8
Q ss_pred CCccHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH-------------HHccCHH
Q 003991 377 KSISVDFRLSRGIAQVN---------EGKYASAISIFDQILKEDPMYP--EALIGRGTAR-------------AFQRELE 432 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~---------~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~-------------~~~g~~~ 432 (781)
++.+...|...+..... .|+++.|+.+|+++++ .|... ..|...+... ...+++.
T Consensus 117 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~ 195 (530)
T 2ooe_A 117 EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYM 195 (530)
T ss_dssp STTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred CcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHH
Confidence 34455566555555443 7899999999999998 56543 2332222211 1345677
Q ss_pred HHHHHHHH------HHHh-----CCCc-------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhCCCCHHHH
Q 003991 433 AAISDFTE------AIQS-----NPSA-------GEAWKRRGQARAAL----GES----VEAIQDLSKALEFEPNSADIL 486 (781)
Q Consensus 433 ~A~~~~~~------al~~-----~p~~-------~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~ 486 (781)
.|...+.. .+.. .|.. ...|.......... ++. ..++..|++++...|.++.+|
T Consensus 196 ~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w 275 (530)
T 2ooe_A 196 NARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIW 275 (530)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHH
Confidence 88777665 3332 2322 23444433322221 232 478899999999999999999
Q ss_pred HHHHHHHHh-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Q 003991 487 HERGIVNFK-------FKDFN-------AAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (781)
Q Consensus 487 ~~la~~~~~-------~~~~~-------~A~~~~~~a~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (781)
..+|..+.. .|+++ +|+..|+++++ ..|++..+|..++.++...|++++|...|++++...|.++
T Consensus 276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 355 (530)
T 2ooe_A 276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH
T ss_pred HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc
Confidence 999999986 79977 99999999997 7999999999999999999999999999999999999885
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 003991 552 -EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL-LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629 (781)
Q Consensus 552 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 629 (781)
.+|..++.++...|++++|...|+++++..|.....+...+.+ +...|++++|..+|+++++..|+++.+|..++.++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~ 435 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL 435 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 6999999999999999999999999999988887777776665 34699999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCc
Q 003991 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP 691 (781)
Q Consensus 630 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 691 (781)
...|++++|...|++++...|.+++... ..+..........|+.+.+...+.++....|
T Consensus 436 ~~~g~~~~Ar~~~~~al~~~~~~~~~~~---~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 436 SHLNEDNNTRVLFERVLTSGSLPPEKSG---EIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp TTTTCHHHHHHHHHHHHHSCCSCGGGCH---HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HhCCCHhhHHHHHHHHHhccCCCHHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999998776554110 1122222233456888888888888887777
No 36
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=5e-25 Score=237.48 Aligned_cols=300 Identities=18% Similarity=0.155 Sum_probs=259.1
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCC
Q 003991 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPS 447 (781)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 447 (781)
......++.+|..++..|++++|+.+|+++++..|.++ .++..+|.++...|++++|+.++++++.. .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44577889999999999999999999999999999984 67899999999999999999999999886 344
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------HHH
Q 003991 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--------------------FNA 501 (781)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~ 501 (781)
...++..+|.++...|++++|+.++++++.+.|.. ..++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 56789999999999999999999999999886643 5589999999999999 999
Q ss_pred HHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHH
Q 003991 502 AVEDLSACVKL------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEK 569 (781)
Q Consensus 502 A~~~~~~a~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~ 569 (781)
|+.++++++.. .+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999999886 23335688999999999999999999999999886654 3489999999999999999
Q ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHH
Q 003991 570 ALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYRE 637 (781)
Q Consensus 570 A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 637 (781)
|+.++++++...+.. ..++..+|.++...|++++|+.+|++++...+.. ..++..+|.+|..+|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999887655 6788999999999999999999999999875543 6789999999999999999
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhh
Q 003991 638 AIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINS 678 (781)
Q Consensus 638 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (781)
|+.+|++++++.+.... ......++...+..+...|+...
T Consensus 326 A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGD-KSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcC-CcchhHHHHHHHHHHHHhhHhHH
Confidence 99999999998655422 12334566677777777776543
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=2.3e-24 Score=232.91 Aligned_cols=275 Identities=18% Similarity=0.157 Sum_probs=246.5
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCC
Q 003991 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPS 447 (781)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 447 (781)
+.....++.+|..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+.++++++.. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34567788999999999999999999999999999987 58899999999999999999999999987 466
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHH
Q 003991 448 AGEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKD-----------------FNAAVE 504 (781)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~ 504 (781)
...++..+|.++...|++++|+.++++++.. .+....++..+|.++...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 6789999999999999999999999999988 45557799999999999999 999999
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH------HHHHHHHHHHHHcCCHHHHHH
Q 003991 505 DLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQDLANSEKALE 572 (781)
Q Consensus 505 ~~~~a~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~ 572 (781)
++++++.+. +....++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999998764 22346889999999999999999999999999877543 388999999999999999999
Q ss_pred HHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHHHHH
Q 003991 573 CLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIK 640 (781)
Q Consensus 573 ~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~ 640 (781)
++++++...+.. ..++..+|.++...|++++|+.+|++++...+. ...++..+|.+|..+|++++|+.
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999887643 678899999999999999999999999987543 24689999999999999999999
Q ss_pred HHHHHHhhccCc
Q 003991 641 DYDAALDLELDS 652 (781)
Q Consensus 641 ~~~~al~~~p~~ 652 (781)
+|++++++.+..
T Consensus 365 ~~~~al~~~~~~ 376 (411)
T 4a1s_A 365 YAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHCCHH
T ss_pred HHHHHHHHHhhc
Confidence 999999998754
No 38
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=5.4e-24 Score=222.55 Aligned_cols=272 Identities=19% Similarity=0.195 Sum_probs=238.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCcHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPSAGE 450 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 450 (781)
...++..|..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+.++++++.. .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 56778899999999999999999999999999984 67889999999999999999999999887 344577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 003991 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--------------------FNAAVE 504 (781)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~ 504 (781)
++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 89999999999999999999999999886543 4488999999999999 999999
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHH
Q 003991 505 DLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALE 572 (781)
Q Consensus 505 ~~~~a~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~ 572 (781)
++++++... +....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998762 2335688999999999999999999999999886543 3489999999999999999999
Q ss_pred HHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHH
Q 003991 573 CLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIK 640 (781)
Q Consensus 573 ~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~ 640 (781)
++++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 999999876654 6788999999999999999999999999875432 4588999999999999999999
Q ss_pred HHHHHHhhccCc
Q 003991 641 DYDAALDLELDS 652 (781)
Q Consensus 641 ~~~~al~~~p~~ 652 (781)
++++++++.++.
T Consensus 325 ~~~~a~~~~~~~ 336 (338)
T 3ro2_A 325 FAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=1.7e-22 Score=205.93 Aligned_cols=257 Identities=12% Similarity=0.006 Sum_probs=225.9
Q ss_pred hccCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHH
Q 003991 374 SKSKSIS-VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGE 450 (781)
Q Consensus 374 ~~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 450 (781)
....|.+ .+..+.++..++..|+++.|+..++. .+|....++..++..+...+++++|+..+++++.. +|+++.
T Consensus 26 ~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~ 102 (291)
T 3mkr_A 26 KPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT 102 (291)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHH
T ss_pred ccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHH
Confidence 3444544 45778889999999999999998866 25656778889999999999999999999999986 699999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHH
Q 003991 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG--LALS 528 (781)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la--~~~~ 528 (781)
+++.+|.++...|++++|+..+++ |.+..++..+|.++...|++++|+..++++++.+|++.......+ .++.
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~ 177 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA 177 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh
Confidence 999999999999999999999998 889999999999999999999999999999999999875544434 3344
Q ss_pred HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH-HHHH
Q 003991 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-AIKD 607 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~ 607 (781)
..|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++..+|+++.++.++|.++...|++.+ +..+
T Consensus 178 ~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999976 5789
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003991 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642 (781)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 642 (781)
++++++.+|+++.+.- +..+.+.|+++..-|
T Consensus 258 ~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 258 LSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 9999999999987653 455666666666554
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.91 E-value=9.1e-23 Score=221.98 Aligned_cols=85 Identities=14% Similarity=-0.035 Sum_probs=50.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcccchhhhhhHHHHHHhhhCH---HHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC--
Q 003991 43 LAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELH---KHVIRDCDKALQLDPTLLQAYILKGCAFSALG-- 117 (781)
Q Consensus 43 ~~~~~~~g~~~~A~~~y~~ai~~~~~~~~~~~rA~~~~~~~~~---~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-- 117 (781)
+..+++.|++++|+.+|+++++.. ++..++++|.+|+..|++ ++|+..++++++. ++.+++.+|.++...|
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g-~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG-YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-CCTGGGTCC-------------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCC
Confidence 445789999999999999998774 667788999999999988 9999999999976 7789999999877777
Q ss_pred ---CHHHHHHHHHHHHh
Q 003991 118 ---RKEEALSVWEKGYE 131 (781)
Q Consensus 118 ---~~~~A~~~~~~al~ 131 (781)
++++|+..|+++++
T Consensus 86 ~~~~~~~A~~~~~~Aa~ 102 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFA 102 (452)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 88999999999943
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=1.3e-21 Score=198.26 Aligned_cols=232 Identities=17% Similarity=0.159 Sum_probs=182.2
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQDLSKALEFEPNSADIL 486 (781)
Q Consensus 411 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 486 (781)
+|.++.+++.+|.++...|++++|+.+|+++++ |.++.+++.+|.++.. .+++++|+.+|+++++.. ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 456677777777777777777777777777776 5666777777777777 777777777777777764 67777
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHH
Q 003991 487 HERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558 (781)
Q Consensus 487 ~~la~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la 558 (781)
+.+|.++.. .+++++|+.+|++++.. +++.++..+|.++.. .+++++|+.+|+++++.. ++.++..+|
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 777777777 77888888888887776 367778888888887 888888888888888765 567788888
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991 559 QFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (781)
Q Consensus 559 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (781)
.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..| +.+++.+|.+|.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 88887 88888888888888876 457888888888888 8888889888888888765 788888999998
Q ss_pred H----hCCHHHHHHHHHHHHhhccCcHH
Q 003991 631 A----IGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 631 ~----~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
. .+++++|+.+|++++++.|++..
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 8 88899999999999988887654
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=8.9e-23 Score=202.79 Aligned_cols=219 Identities=22% Similarity=0.217 Sum_probs=152.5
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (781)
..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003991 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (781)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 538 (781)
+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888888888887777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (781)
Q Consensus 539 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (781)
.+++++...|.+..++..+|.++...|++++|+.++++++..+|+++.++..++.+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777776666655443
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=9.2e-23 Score=202.69 Aligned_cols=216 Identities=19% Similarity=0.167 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (781)
+..++.+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574 (781)
Q Consensus 495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 574 (781)
..|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666665555555555566555556666666555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (781)
Q Consensus 575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (781)
++++...|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..++.+..
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555554443
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.91 E-value=5.1e-23 Score=208.82 Aligned_cols=247 Identities=18% Similarity=0.154 Sum_probs=205.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 003991 391 QVNEGKYASAISIFDQILKED----PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (781)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (781)
....|++++|+..|+++++.. |.++.+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 344688899999999998873 4567788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (781)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (781)
+|+.+|++++..+|.++.++..+|.++...|++++|+.++++++...|++.......+.. ...|++++|+..+.+++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999888666655544 5668999999999999888
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR----FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (781)
Q Consensus 547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (781)
.|.+...+. ++.++...++.++|+..+++++...|. ++.++..+|.++...|++++|+.+|++++..+|++..
T Consensus 174 ~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 250 (275)
T 1xnf_A 174 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV-- 250 (275)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH--
T ss_pred CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH--
Confidence 887755544 677777888888899999888876663 3678888999999999999999999999998887643
Q ss_pred HHHHHHHHHhCCHHHHHHHH
Q 003991 623 YLRASCYHAIGEYREAIKDY 642 (781)
Q Consensus 623 ~~la~~~~~~g~~~~A~~~~ 642 (781)
..+.++..+|++++|+..|
T Consensus 251 -~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 -EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHhhHHHH
Confidence 3377888888898888877
No 45
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.90 E-value=2.8e-23 Score=224.37 Aligned_cols=283 Identities=18% Similarity=0.142 Sum_probs=249.2
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Q 003991 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALEF------EPNS 482 (781)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 482 (781)
.....++.+|..+...|++++|+.+|++++...|.+. .++..+|.++...|++++|+.++++++.. .|..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3456678899999999999999999999999999986 58999999999999999999999999988 4556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHH
Q 003991 483 ADILHERGIVNFKFKDFNAAVEDLSACVKL------DKENKSAYTYLGLALSSIGE-----------------YKKAEEA 539 (781)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~ 539 (781)
..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|+ +++|+.+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 789999999999999999999999999988 45556789999999999999 9999999
Q ss_pred HHHHHhhC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHCCCHHHHHHH
Q 003991 540 HLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGLGQHKKAIKD 607 (781)
Q Consensus 540 ~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~ 607 (781)
+++++.+. +....++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+.+
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99998864 33467899999999999999999999999998876432 3889999999999999999999
Q ss_pred HHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q 003991 608 LSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFC 681 (781)
Q Consensus 608 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 681 (781)
|++++...+.. ..++..+|.++..+|++++|+.+|++++++.++... ....+.+++..|..+...|++++|+.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD-RIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999887643 678999999999999999999999999998765432 23445678889999999999999999
Q ss_pred HHhhhcCCCcccHHH
Q 003991 682 WFDIDGDIDPLFKEY 696 (781)
Q Consensus 682 ~~~~~~~~~p~~~~~ 696 (781)
+|.++..+.+....-
T Consensus 365 ~~~~al~~~~~~~~~ 379 (411)
T 4a1s_A 365 YAEQHLQLAXXXXXX 379 (411)
T ss_dssp HHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999988765544
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.90 E-value=9.6e-23 Score=219.52 Aligned_cols=279 Identities=18% Similarity=0.143 Sum_probs=244.6
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CC
Q 003991 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALEFE------PN 481 (781)
Q Consensus 412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~ 481 (781)
+....+++.+|.++...|++++|+.+|++++...|.++ .++..+|.++...|++++|+.++++++... |.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34567889999999999999999999999999999884 678999999999999999999999998873 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHH
Q 003991 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGE--------------------YKK 535 (781)
Q Consensus 482 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~--------------------~~~ 535 (781)
...++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 46789999999999999999999999999886543 4588999999999999 999
Q ss_pred HHHHHHHHHhh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHCCCHHH
Q 003991 536 AEEAHLKAIQL------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGLGQHKK 603 (781)
Q Consensus 536 A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~ 603 (781)
|+..+.+++.. .+....++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999999887 344567899999999999999999999999998765443 389999999999999999
Q ss_pred HHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchh
Q 003991 604 AIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKIN 677 (781)
Q Consensus 604 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (781)
|+.++++++...|.. ..++..+|.++...|++++|+.+|++++++.+.... ....+.++...|..+...|+++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND-RIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999886654 678999999999999999999999999998765532 2334567788899999999999
Q ss_pred hHHHHHhhhcCCCc
Q 003991 678 SEFCWFDIDGDIDP 691 (781)
Q Consensus 678 ~A~~~~~~~~~~~p 691 (781)
+|+.+|.++..+.+
T Consensus 325 ~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 325 QAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877643
No 47
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.90 E-value=7.5e-23 Score=213.85 Aligned_cols=278 Identities=18% Similarity=0.153 Sum_probs=240.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSAD 484 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 484 (781)
...++..|..+...|++++|+.+|++++...|.+ ..++..+|.++...|++++|+.++++++.. .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3567889999999999999999999999999998 467889999999999999999999999887 334477
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 003991 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGE--------------------YKKAEE 538 (781)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~ 538 (781)
++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 89999999999999999999999999876543 3488899999999999 999999
Q ss_pred HHHHHHhh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHH
Q 003991 539 AHLKAIQL------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK 606 (781)
Q Consensus 539 ~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~ 606 (781)
.+++++.. .+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999876 33446789999999999999999999999999775532 3388999999999999999999
Q ss_pred HHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHH
Q 003991 607 DLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEF 680 (781)
Q Consensus 607 ~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 680 (781)
++++++...+.. ..++..+|.++...|++++|+.++++++++.|.... ......++...|..+...|++++|.
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999999886654 678899999999999999999999999998765432 2344567888899999999999999
Q ss_pred HHHhhhcCCCccc
Q 003991 681 CWFDIDGDIDPLF 693 (781)
Q Consensus 681 ~~~~~~~~~~p~~ 693 (781)
.+|.++..+.+..
T Consensus 324 ~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 324 HFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHhh
Confidence 9999998876643
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=9e-22 Score=196.85 Aligned_cols=212 Identities=19% Similarity=0.092 Sum_probs=179.4
Q ss_pred CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003991 445 NPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (781)
Q Consensus 445 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 523 (781)
+|.. +.++..+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 4443 567777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 003991 524 GLALSSIGEYKKAEEAHLKAIQ--LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (781)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 601 (781)
|.++...|++++|+.++++++. ..|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence 8888888888888888888888 77778888888888888888888888888888888888888888899999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (781)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 656 (781)
++|+..++++++..|.++.++..++.++...|++++|..++++++++.|+++...
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999888888888888899999999999999999999999998887644
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=4e-22 Score=188.87 Aligned_cols=174 Identities=25% Similarity=0.320 Sum_probs=154.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 003991 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (781)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 560 (781)
+++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+...++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888888888888888888888888888888998
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003991 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK 640 (781)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 640 (781)
+...++++.|...+.+++...|.+..++..+|.++..+|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCcHH
Q 003991 641 DYDAALDLELDSME 654 (781)
Q Consensus 641 ~~~~al~~~p~~~~ 654 (781)
+|+++++++|+++.
T Consensus 163 ~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 163 YFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHTTHHHHH
T ss_pred HHHHHHhCCccCHH
Confidence 99999999887643
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=2.4e-22 Score=203.77 Aligned_cols=251 Identities=19% Similarity=0.157 Sum_probs=220.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 003991 421 RGTARAFQRELEAAISDFTEAIQSN----PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF 496 (781)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 496 (781)
++..+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 3344455689999999999999974 456789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (781)
Q Consensus 497 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (781)
|++++|+.++++++..+|.++.++..+|.++...|++++|+..+++++...|++......++.. ...|++++|+..+++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQ 169 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998766666544 667999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991 577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN----IECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (781)
Q Consensus 577 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (781)
++...|.+...+. ++.++...++.++|+..+.+++...|.. +.++..+|.++...|++++|+.+|+++++++|++
T Consensus 170 ~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 170 HFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 9999998766654 7778888899999999999999887743 6899999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 003991 653 MEKFVLQCLAFYQKEIALYTASKINSEFCWF 683 (781)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 683 (781)
...+ +.++...+++++|+..+
T Consensus 249 ~~~~----------~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH----------RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH----------HHHHHHHHHHHHC----
T ss_pred HHHH----------HHHHHHHHHHHhhHHHH
Confidence 5422 45666778888888776
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=4e-21 Score=194.71 Aligned_cols=234 Identities=18% Similarity=0.164 Sum_probs=216.7
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAW 452 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 452 (781)
.|.++.+++.+|..++..|++++|+.+|+++++ |.++.+++.+|.++.. .+++++|+.+|+++++.. ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 467789999999999999999999999999998 7889999999999999 999999999999999985 78999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991 453 KRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (781)
Q Consensus 453 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la 524 (781)
+.+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++.. ++.++..+|
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 999999999 999999999999999974 89999999999999 999999999999999976 688999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003991 525 LALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (781)
Q Consensus 525 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (781)
.++.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++..| +.++..+|.++.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 99999 99999999999999987 457899999999999 9999999999999999866 889999999999
Q ss_pred H----CCCHHHHHHHHHHhhccCCCCHHHH
Q 003991 597 G----LGQHKKAIKDLSSGLGIDPSNIECL 622 (781)
Q Consensus 597 ~----~g~~~~A~~~~~~al~~~p~~~~~~ 622 (781)
. .+++++|+.+|+++++..|.++..+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9 9999999999999999988754433
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=2.1e-21 Score=190.14 Aligned_cols=212 Identities=13% Similarity=-0.033 Sum_probs=153.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (781)
Q Consensus 445 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 524 (781)
.|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666667777777777777766666666777777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 003991 525 LALSSI-GEYKKAEEAHLKAIQ--LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (781)
Q Consensus 525 ~~~~~~-g~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 601 (781)
.++... |++++|+..+++++. ..|....++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 777777 777777777777776 55556677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhccCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991 602 KKAIKDLSSGLGIDP-SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (781)
Q Consensus 602 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 656 (781)
++|+..+++++...| .++..+..++.++...|++++|..+++.+.+.+|+++...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 777777777777777 7777777777777777777777777777777777776643
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=3.5e-21 Score=188.58 Aligned_cols=211 Identities=15% Similarity=0.092 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (781)
Q Consensus 412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (781)
|.++.+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHhc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Q 003991 492 VNFKF-KDFNAAVEDLSACVK--LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (781)
Q Consensus 492 ~~~~~-~~~~~A~~~~~~a~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 568 (781)
++... |++++|+..+++++. ..|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 44444 444555544444444 333334445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991 569 KALECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (781)
Q Consensus 569 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (781)
+|+..+++++...| .++..+..++.++...|++++|..+++.+....|+++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 55555555555555 5555555555555555555555555555555555554443
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=3e-21 Score=192.96 Aligned_cols=210 Identities=16% Similarity=0.107 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999988888888898888
Q ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003991 461 ALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 538 (781)
..|++++|+.++++++. ..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...|++++|+.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 88999999998888888 7777778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003991 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (781)
Q Consensus 539 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 590 (781)
.+++++...|.+..++..++.++...|++++|..++++++...|+++.+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8888888888777778888888888888888888888888887777765543
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.89 E-value=9.4e-22 Score=213.99 Aligned_cols=257 Identities=11% Similarity=0.017 Sum_probs=152.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCcHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEA----AISDFTEAIQSNPSAGEAWKR 454 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~ 454 (781)
++.+++.+|..+...+...++...++..... .+.++.+++.+|.+|...+.+++ +..++..+...+|. +++.
T Consensus 105 ~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~ 181 (452)
T 3e4b_A 105 EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVE 181 (452)
T ss_dssp CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHH
Confidence 3446666666666655433332222222221 12345566666666666663333 33333333333332 6666
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 003991 455 RGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENKSAYTYLGLA- 526 (781)
Q Consensus 455 la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~la~~- 526 (781)
+|.+|...| ++++|+.+|+++.+..|.....++.+|.+|... +++++|+.+|+++. |.++.+++.+|.+
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLL 258 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHH
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 666666666 666677777777666666666666666666554 56666777766665 6666666666666
Q ss_pred H--HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q 003991 527 L--SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-----NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-- 597 (781)
Q Consensus 527 ~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-- 597 (781)
+ ...+++++|+.+|+++.+. .++.+++.+|.+|. .| ++++|+.+|+++. +.++.+++.+|.+|..
T Consensus 259 ~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 259 YDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTT
T ss_pred HhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCC
Confidence 3 3466666677776666643 35666666666666 44 6666777666666 6666666666666655
Q ss_pred --CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhcc
Q 003991 598 --LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLEL 650 (781)
Q Consensus 598 --~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 650 (781)
..++++|+.+|+++.+. .++.+.+.+|.+|.. ..++.+|..+|+++.+..+
T Consensus 333 g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 33666677766666653 345666666666653 3466666666666666543
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=2.7e-21 Score=183.14 Aligned_cols=172 Identities=22% Similarity=0.288 Sum_probs=132.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (781)
++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.+..++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 46677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003991 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 539 (781)
...++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhCcccH
Q 003991 540 HLKAIQLDRNFL 551 (781)
Q Consensus 540 ~~~al~~~~~~~ 551 (781)
|+++++.+|+++
T Consensus 164 ~~~al~~~p~~a 175 (184)
T 3vtx_A 164 FKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHTTHHHH
T ss_pred HHHHHhCCccCH
Confidence 777777777653
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=1.5e-21 Score=201.58 Aligned_cols=250 Identities=9% Similarity=-0.026 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHc
Q 003991 398 ASAISIFDQILKEDPMYPEALIGRGTARAF-------QREL-------EAAISDFTEAIQ-SNPSAGEAWKRRGQARAAL 462 (781)
Q Consensus 398 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 462 (781)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. +.|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 688899999999999999999999998874 4775 889999999998 6898888999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 003991 463 GESVEAIQDLSKALEFEPNSAD-ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IGEYKKAEEAH 540 (781)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 540 (781)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++++|+..|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999998888876 888899998889999999999999998888887777766655443 68899999999
Q ss_pred HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI---DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (781)
Q Consensus 541 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (781)
+++++.+|+++.+|..++.++...|++++|+.+|++++.. .| ....+|..++..+...|++++|..+++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 9999888888888888888888889999999999998885 44 3677888888888888999999999999888888
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (781)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (781)
+++.... ++.+ ....+.+.++|+++++...+
T Consensus 273 ~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln~l 303 (308)
T 2ond_A 273 EEYEGKE-TALL-----------VDRYKFMDLYPCSASELKAL 303 (308)
T ss_dssp TTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHHTT
T ss_pred cccccch-HHHH-----------HHHHHhcccCCCCHHHHHhc
Confidence 7543221 1111 11126677888888765443
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=7.8e-22 Score=216.03 Aligned_cols=223 Identities=17% Similarity=0.162 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQREL-EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475 (781)
Q Consensus 397 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (781)
+++++..++++....|.++.+++.+|.++...|++ ++|+.+|+++++.+|++..++..+|.+|...|++++|+.+|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444445544444555555555555555555555 55555555555555555555555555555555555555555555
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Q 003991 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555 (781)
Q Consensus 476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (781)
++++|+ ..++..+|.++...+. +......|++++|+..|+++++.+|+++.+|.
T Consensus 164 l~~~p~-~~~~~~lg~~~~~~~~-------------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 217 (474)
T 4abn_A 164 LTHCKN-KVSLQNLSMVLRQLQT-------------------------DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY 217 (474)
T ss_dssp HTTCCC-HHHHHHHHHHHTTCCC-------------------------SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhhCCC-HHHHHHHHHHHHHhcc-------------------------CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 555554 4455555555554400 00000005555555555555555555555555
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHH
Q 003991 556 HLTQFYQDL--------ANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624 (781)
Q Consensus 556 ~la~~~~~~--------g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 624 (781)
.+|.++... |++++|+.+|++++.++| .++.+++.+|.++...|++++|+..|+++++++|+++.++..
T Consensus 218 ~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~ 297 (474)
T 4abn_A 218 ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQR 297 (474)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 555555555 666666666666666666 666666666766666777777777777777777776667777
Q ss_pred HHHHHHHhCCHHHHHHHHHHH
Q 003991 625 RASCYHAIGEYREAIKDYDAA 645 (781)
Q Consensus 625 la~~~~~~g~~~~A~~~~~~a 645 (781)
++.++..+|++++|+..+.+.
T Consensus 298 l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 298 EQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 777777777777776665543
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=5e-22 Score=217.55 Aligned_cols=209 Identities=18% Similarity=0.130 Sum_probs=187.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF-NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (781)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (781)
.+++++..+.+.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356677777777777888888888888888888888 8888888888888888888888888888888888888888888
Q ss_pred HHhhCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--------CCHHHHH
Q 003991 543 AIQLDRNFLEAWGHLTQFYQDL---------ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL--------GQHKKAI 605 (781)
Q Consensus 543 al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A~ 605 (781)
+++.+|+ ..++..+|.++... |++++|+..|++++..+|+++.+|..+|.++... |++++|+
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 8888888 68888888888888 9999999999999999999999999999999999 9999999
Q ss_pred HHHHHhhccCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHH
Q 003991 606 KDLSSGLGIDP---SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTA 673 (781)
Q Consensus 606 ~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 673 (781)
..|+++++++| +++.+++.+|.+|..+|++++|+..|+++++++|+++.++..++.++...+..-...
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999999999999999998888776554443
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=1.4e-20 Score=194.13 Aligned_cols=223 Identities=10% Similarity=-0.003 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Q 003991 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAA-------LGES-------VEAIQDLSKALE-FEPNSADILHERGIVNFKF 496 (781)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 496 (781)
++|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+..|++++. +.|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5886 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cCCHHHHHHHH
Q 003991 497 KDFNAAVEDLSACVKLDKENKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-LANSEKALECL 574 (781)
Q Consensus 497 ~~~~~A~~~~~~a~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~ 574 (781)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....+|...+.+... .|++++|+.+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999887 999999999999999999999999999999988888877766544 79999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc---CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI---DP-SNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (781)
Q Consensus 575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (781)
++++..+|+++.+|..+|.++...|++++|+..|++++.. .| ....+|..++..+...|++++|...++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999995 55 3788999999999999999999999999999999
Q ss_pred CcHH
Q 003991 651 DSME 654 (781)
Q Consensus 651 ~~~~ 654 (781)
++.+
T Consensus 273 ~~~~ 276 (308)
T 2ond_A 273 EEYE 276 (308)
T ss_dssp TTTS
T ss_pred cccc
Confidence 8654
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.87 E-value=3.7e-20 Score=181.99 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (781)
.+++.++.+|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+.+|++++..+|++..++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3445555555555555555555555555555555 555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003991 458 ARAALGESVEAIQDLSKALEFEPNSA 483 (781)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~ 483 (781)
++...|++++|+..++++++..|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~ 110 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNA 110 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 55555555555555555555555554
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.87 E-value=4.5e-20 Score=181.38 Aligned_cols=214 Identities=15% Similarity=0.156 Sum_probs=193.8
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003991 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489 (781)
Q Consensus 411 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 489 (781)
.+.++..++.+|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|++++..+|.++.++..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 356789999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHH
Q 003991 490 GIVNFKFKDFNAAVEDLSACVKLDKENK-------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQF 560 (781)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~ 560 (781)
|.++...|++++|+..++++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999999999998 66999999999999999999999999999999 99999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (781)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (781)
+...| ...++++..+.+.....+ .+......+.+++|+.+|+++++++|+++.+...++.+...
T Consensus 163 ~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 97655 445677777777665544 34445567789999999999999999999999998887643
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=8.1e-21 Score=215.60 Aligned_cols=175 Identities=17% Similarity=0.267 Sum_probs=139.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Q 003991 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558 (781)
Q Consensus 479 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 558 (781)
.|++++++.++|.++..+|++++|+.+|+++++++|++..++.++|.++..+|++++|+..|+++++++|++..+++++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56667777777777777777777777777777777777777777788888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHH
Q 003991 559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (781)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (781)
.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhccCcH
Q 003991 639 IKDYDAALDLELDSM 653 (781)
Q Consensus 639 ~~~~~~al~~~p~~~ 653 (781)
.+.+++++++.|+..
T Consensus 165 ~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 165 DERMKKLVSIVADQL 179 (723)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhHH
Confidence 888888887776543
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.85 E-value=4.7e-20 Score=196.94 Aligned_cols=234 Identities=15% Similarity=0.085 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 003991 417 ALIGRGTARAFQRELEAAISDFTEAIQS---NPS---AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------A 483 (781)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~ 483 (781)
.++.+|.++...|++++|+.+|++++.. .++ ...++..+|.++...|++++|+.++.+++++.+.. .
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3445999999999999999999999987 233 45789999999999999999999999999985433 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-cccH
Q 003991 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQ-----LD-RNFL 551 (781)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-~~~~ 551 (781)
.++..+|.++...|++++|+.++++++...+.. ..++.++|.++...|++++|+.++++++. .+ |...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 589999999999999999999999999875433 25889999999999999999999999999 46 7788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHhhccCCCCHHHHH
Q 003991 552 EAWGHLTQFYQDLANSEKALECLQQVLYID-----KRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLY 623 (781)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~ 623 (781)
.++..+|.++...|++++|+.++++++.+. |.....+..+|.++...|+ +.+|+..+++. ...|....++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 999999999999999999999999999874 3333346779999999999 88898888887 33444567889
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 624 LRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
.+|.+|...|++++|..+|++++++...
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.5e-21 Score=198.94 Aligned_cols=252 Identities=14% Similarity=0.076 Sum_probs=158.4
Q ss_pred ccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Q 003991 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN- 445 (781)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 445 (781)
...|..+..+..+|..++..|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 457788888899999999999999999999998884 55566778888888888888888888888887762
Q ss_pred -------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003991 446 -------PSAGEAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (781)
Q Consensus 446 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 510 (781)
|....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445566777777777777777777777776653 2234455555666666666666666665555
Q ss_pred Hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991 511 KL--------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (781)
Q Consensus 511 ~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 582 (781)
.. .|....++..+|.++...|++++|+.++++++...+.... + ...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~--------------------~~~~ 235 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF-----G--------------------SVDD 235 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH-----C------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-----C--------------------CCCc
Confidence 54 3333444555555555555555555555555543322100 0 0011
Q ss_pred CC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 583 RF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 583 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
.. ...+...+..+...+.+.+|...+.++....|..+.++..+|.+|..+|++++|+.+|++++++.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 2233344555556677778888888888888888899999999999999999999999999998875
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.85 E-value=2.8e-20 Score=198.72 Aligned_cols=302 Identities=12% Similarity=0.017 Sum_probs=236.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHH--HHH--HHHHHHccCHHHHH-----------HHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDP---MYPEAL--IGR--GTARAFQRELEAAI-----------SDFTEA 441 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~a 441 (781)
.+...+.-....+..+++++|..+++++.+.-+ .+...+ +.+ .+.....++++.+. ..++++
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 90 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI 90 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence 355566667778899999999999999866432 344433 222 22333345555555 555554
Q ss_pred HHhCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003991 442 IQSNPSAGE------AWKRRGQARAALGESVEAIQDLSKALEF---EPN---SADILHERGIVNFKFKDFNAAVEDLSAC 509 (781)
Q Consensus 442 l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (781)
-. .|.... .++.+|.++...|++++|+.+|++++.+ .++ ...++..+|.++...|++++|+.+++++
T Consensus 91 ~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 91 DK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 333322 3455999999999999999999999987 232 3578999999999999999999999999
Q ss_pred HHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 510 VKLDKEN-------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQ 576 (781)
Q Consensus 510 ~~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (781)
+.+.+.. ..++..+|.++...|++++|+.++++++...+.. ..++.++|.+|...|++++|+.++++
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9984433 4588999999999999999999999999886543 46899999999999999999999999
Q ss_pred HHh-----hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-----CCCHHHHHHHHHHHHHhCC---HHHHHHHH
Q 003991 577 VLY-----ID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-----PSNIECLYLRASCYHAIGE---YREAIKDY 642 (781)
Q Consensus 577 al~-----~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~ 642 (781)
++. .+ |..+.++..+|.++...|++++|+.++++++.+. |.....+..+|.++...|+ +.+|+..+
T Consensus 250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~ 329 (383)
T 3ulq_A 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329 (383)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 998 45 7778899999999999999999999999999874 3333446779999999999 78888887
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCC
Q 003991 643 DAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID 690 (781)
Q Consensus 643 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 690 (781)
++. ...| ....++..+|..+...|++++|..+|+++..+.
T Consensus 330 ~~~-~~~~-------~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 330 ESK-MLYA-------DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHT-TCHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHC-cCHH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 776 2222 233466788889999999999999998887643
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.84 E-value=5.2e-20 Score=208.95 Aligned_cols=175 Identities=18% Similarity=0.256 Sum_probs=158.2
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (781)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (781)
..|.+++++..+|.++..+|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++..+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 003991 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535 (781)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 535 (781)
|.++..+|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCccc
Q 003991 536 AEEAHLKAIQLDRNF 550 (781)
Q Consensus 536 A~~~~~~al~~~~~~ 550 (781)
|++.+++++++.|+.
T Consensus 164 A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 164 YDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhH
Confidence 999999988876653
No 68
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.84 E-value=7.1e-19 Score=177.39 Aligned_cols=242 Identities=14% Similarity=0.045 Sum_probs=163.9
Q ss_pred HHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHc
Q 003991 390 AQVNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQR--ELEAAISDFTEAIQSNPSAGEAWKRRGQAR----AAL 462 (781)
Q Consensus 390 ~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~ 462 (781)
.....|.+ ++|+.++.+++..+|++..+|..++.++...| ++++++.++..++..+|++..+|...+.++ ...
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence 34455555 58999999999999999999999999999988 888888888888888888888888888888 555
Q ss_pred ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003991 463 ---GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN--AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (781)
Q Consensus 463 ---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 537 (781)
+++++++..+.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|.+..+|...+.++...+...
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~--- 197 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA--- 197 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC---
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc---
Confidence 66777777777777777777777777777777777766 6677777777777777777766666666655400
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHhhccC-
Q 003991 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-AIKDLSSGLGID- 615 (781)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~- 615 (781)
. ...++++++++.+++..+|.+..+|+.++.++...|+..+ ....+.+++..+
T Consensus 198 ------------~-------------~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 198 ------------T-------------DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp ------------C-------------HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred ------------h-------------hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence 0 0014555555555555555555555555555555555333 333444444443
Q ss_pred --CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-hccCcHHHHHHH
Q 003991 616 --PSNIECLYLRASCYHAIGEYREAIKDYDAALD-LELDSMEKFVLQ 659 (781)
Q Consensus 616 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~ 659 (781)
|.++.++..+|.+|.+.|+.++|+++|+.+.+ .+|-....|...
T Consensus 253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 55566666666666666666666666666664 566665555444
No 69
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.84 E-value=1e-18 Score=176.19 Aligned_cols=213 Identities=11% Similarity=0.014 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHH
Q 003991 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFK--DFNAAVEDLSACVKLDKENKSAYTYLGLAL----SSI---GEYKKA 536 (781)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~la~~~----~~~---g~~~~A 536 (781)
++|+..+.+++.++|++..+|...+.++...+ ++++++.++..++..+|.+..+|...+.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 45566666666666666666666666666555 666666666666666666666666666666 444 567777
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC------HHHHHHHH
Q 003991 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE--KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ------HKKAIKDL 608 (781)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~ 608 (781)
+.++.++++.+|.+..+|...+.++...|.++ +++.+++++++.+|.+..+|..++.++...+. ++++++++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 77777777777777777777777777777777 88888888888888888888888888888877 99999999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHhhc---cCcHHHHHHHHHHHHHHHHHHHHHhchhh
Q 003991 609 SSGLGIDPSNIECLYLRASCYHAIGEYRE-AIKDYDAALDLE---LDSMEKFVLQCLAFYQKEIALYTASKINS 678 (781)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (781)
.+++..+|++..+|..++.++...|+..+ ...++.++++++ |.++.++..++.++...+....+..-++.
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999999999999999999998555 556888888877 88999999999888765544333333333
No 70
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=3.9e-17 Score=187.62 Aligned_cols=242 Identities=14% Similarity=0.114 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------------
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------------- 447 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------- 447 (781)
+..|+.+|.++...|++++|+..|.++ +++..+..+|.++...|++++|+++|..+.+..++
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh
Confidence 556666666666666666666666553 55566666666666666666666666665554432
Q ss_pred --------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003991 448 --------------AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (781)
Q Consensus 448 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 513 (781)
+...+..+|..+...|++++|..+|.++ ..|..++.++.+.|++++|++.++++
T Consensus 1180 l~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A 1180 TNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred hcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence 1122333444444444444444444443 23444444444444444444444444
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 003991 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (781)
Q Consensus 514 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 593 (781)
.+..+|...+.++...|++..|..+... +.. +++.+..++..|...|.+++|+.++++++.+++.+...+..+|.
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 2334444444444444444444444332 222 23344567777888888888888888888888888888877777
Q ss_pred HHHH--CCCHHHHHHHHHHhhccCC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991 594 LLHG--LGQHKKAIKDLSSGLGIDP-----SNIECLYLRASCYHAIGEYREAIKDYDA 644 (781)
Q Consensus 594 ~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (781)
++.+ -++..++++.|...+.+.| .+...|..+..+|.+-|+++.|+...-.
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 7655 4567777788887777766 5677888888888888888888844433
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=9.9e-21 Score=195.55 Aligned_cols=207 Identities=14% Similarity=0.069 Sum_probs=157.2
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Q 003991 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-- 445 (781)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 445 (781)
..+..+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999987 35567889999999999999999999999999874
Q ss_pred ------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003991 446 ------PSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (781)
Q Consensus 446 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 511 (781)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++.
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556778999999999999999999999999998 666678899999999999999999999999997
Q ss_pred hCCC---------CH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 512 LDKE---------NK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (781)
Q Consensus 512 ~~p~---------~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (781)
..+. .. ..+...+..+...+.+.+|...+.++....|....++..+|.+|...|++++|+.+|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6432 11 22223333344445555566666666666666667777777777777777777777777
Q ss_pred HHhhCC
Q 003991 577 VLYIDK 582 (781)
Q Consensus 577 al~~~~ 582 (781)
++++.|
T Consensus 304 al~l~~ 309 (311)
T 3nf1_A 304 AMRSRK 309 (311)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 766654
No 72
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.82 E-value=3.2e-19 Score=182.28 Aligned_cols=205 Identities=14% Similarity=0.010 Sum_probs=137.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHH
Q 003991 492 VNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQ 559 (781)
Q Consensus 492 ~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~ 559 (781)
++...|++++|+.+|.+++.+.+. ...++.++|.+|..+|++++|+.+|++++.+.|.. ..++.++|.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444211 13455566666666666666666666666655432 456778888
Q ss_pred HHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH-------HHHHH
Q 003991 560 FYQDL-ANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE-------CLYLR 625 (781)
Q Consensus 560 ~~~~~-g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l 625 (781)
+|... |++++|+.+|++++.+.|.. ..++..+|.++..+|++++|+.+|++++...|++.. ++..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 88888888888888876643 456788899999999999999999999988876543 67889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHH--HHHhchhhHHHHHhhhcCCCcccHHHHH
Q 003991 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL--YTASKINSEFCWFDIDGDIDPLFKEYWC 698 (781)
Q Consensus 626 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 698 (781)
|.++..+|++++|+.+|+++++++|+........ .+...+..+ ...+++.+|+..|+++..++|.....|.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~--~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESN--FLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HH--HHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH--HHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 9999999999999999999999999877643221 222222222 2456799999999999999997776653
No 73
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.82 E-value=5.6e-19 Score=180.51 Aligned_cols=239 Identities=13% Similarity=0.048 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--c-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 399 SAISIFDQILKEDPMYPEALIGRGTARAFQ--R-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475 (781)
Q Consensus 399 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (781)
+|.+++.++-+.-+.....+ .++.. + ++++|+..|.++ |.+|...|++++|+.+|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 35566666666555421111 11122 2 477777777776 45677778888888888888
Q ss_pred HHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 003991 476 LEFEPN------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSI-GEYKKAEEAHLK 542 (781)
Q Consensus 476 l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~ 542 (781)
+.+.+. ...++..+|.+|...|++++|+.+|++++.+.+.. ..++..+|.+|... |++++|+.+|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 776432 14577888888888888888888888888876543 45788899999996 999999999999
Q ss_pred HHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHH
Q 003991 543 AIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK-------AYHLRGLLLHGLGQHKKAIKDLS 609 (781)
Q Consensus 543 al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~ 609 (781)
++++.|.. ..++..+|.++...|++++|+.+|++++...|++.. ++..+|.++..+|++++|+.+|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99988754 567889999999999999999999999998886543 67889999999999999999999
Q ss_pred HhhccCCCCHH-----HHHHHHHHHH--HhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991 610 SGLGIDPSNIE-----CLYLRASCYH--AIGEYREAIKDYDAALDLELDSMEKF 656 (781)
Q Consensus 610 ~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~ 656 (781)
+++.++|+... .+..++..+. ..+++++|+..|++++.++|.....+
T Consensus 224 ~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 99999998654 3445666654 45789999999999999999775533
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=7.4e-19 Score=176.61 Aligned_cols=85 Identities=21% Similarity=0.173 Sum_probs=40.3
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GE 450 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 450 (781)
.|.++..++.+|..++..|++++|+..|+++++.+|.+ +.+++.+|.++...|++++|+..|++++...|++ ..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34444445555555555555555555555555444444 4444444444444444444444444444444422 33
Q ss_pred HHHHHHHHHHH
Q 003991 451 AWKRRGQARAA 461 (781)
Q Consensus 451 ~~~~la~~~~~ 461 (781)
+++.+|.++..
T Consensus 91 a~~~lg~~~~~ 101 (261)
T 3qky_A 91 AEYERAMCYYK 101 (261)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.82 E-value=3.9e-18 Score=181.35 Aligned_cols=271 Identities=15% Similarity=0.060 Sum_probs=226.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------H
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSA------G 449 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 449 (781)
......+|..++..|++++|+..+++++...|... .++..+|.++...|++++|...+++++...|.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 46678889999999999999999999999877543 267889999999999999999999999875533 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----
Q 003991 450 EAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN----- 516 (781)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~----- 516 (781)
.++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|..++++++...+..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 347789999999999999999999999875 2335677889999999999999999999999987752
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--c-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----H
Q 003991 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--F-LEAW----GHLTQFYQDLANSEKALECLQQVLYIDKRF----S 585 (781)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~-~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~ 585 (781)
..++..+|.++...|++++|...+++++...+. . .... ..++.++...|++++|...+++++...+.. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 467889999999999999999999999876332 2 1111 134566889999999999999998876643 3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
..+..+|.++...|++++|...+++++...+. ...++..+|.++...|++++|...+++++.+.+.
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 45778999999999999999999999876432 1257888999999999999999999999988653
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.81 E-value=7.7e-19 Score=176.51 Aligned_cols=199 Identities=14% Similarity=0.039 Sum_probs=180.9
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 003991 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-- 482 (781)
Q Consensus 408 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 482 (781)
....|.++..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|++++...|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 35688999999999999999999999999999999999998 8999999999999999999999999999998855
Q ss_pred -HHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHH
Q 003991 483 -ADILHERGIVNFK--------FKDFNAAVEDLSACVKLDKENKSAY-----------------TYLGLALSSIGEYKKA 536 (781)
Q Consensus 483 -~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~p~~~~~~-----------------~~la~~~~~~g~~~~A 536 (781)
+.+++.+|.++.. .|++++|+..|++++...|+++.+. +.+|.++...|++++|
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 6789999999999 9999999999999999999986555 8889999999999999
Q ss_pred HHHHHHHHhhCcc---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCC
Q 003991 537 EEAHLKAIQLDRN---FLEAWGHLTQFYQDL----------ANSEKALECLQQVLYIDKRFS---KAYHLRGLLLHGLGQ 600 (781)
Q Consensus 537 ~~~~~~al~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~ 600 (781)
+..|++++...|+ .+.+++.+|.+|... |++++|+..|++++...|+++ .+...++.++...++
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 578999999999977 999999999999999999985 566778888888888
Q ss_pred HHHHHH
Q 003991 601 HKKAIK 606 (781)
Q Consensus 601 ~~~A~~ 606 (781)
++.+..
T Consensus 248 ~~~~~~ 253 (261)
T 3qky_A 248 LEGDAS 253 (261)
T ss_dssp HHTCTT
T ss_pred hhhhhH
Confidence 776543
No 77
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=7.3e-19 Score=201.14 Aligned_cols=185 Identities=11% Similarity=-0.075 Sum_probs=99.0
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQIL--------KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (781)
.|.++..++..| +..|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 466 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR 466 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence 344444444444 44555555555555555 5555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 528 (781)
..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++.+|++..+++++|.++.
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS 545 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555 55555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Q 003991 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 565 (781)
.+|++++|+..|+++++++|++..++.++|.++...+
T Consensus 546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 5555555555555555555555555555555554433
No 78
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=3.5e-16 Score=179.83 Aligned_cols=203 Identities=15% Similarity=0.108 Sum_probs=172.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (781)
+...+...|..++..|+|++|+.+|.++ ..|..+|.++...|++++|++.++++ .+..+|...+.++
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC 1260 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHH
Confidence 3456778999999999999999999996 47899999999999999999999998 5678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHH
Q 003991 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS--IGEYKKAE 537 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~--~g~~~~A~ 537 (781)
...|++..|..+... +.. +++.+..++..|...|.+++|+.+++.++.+++.+...+..+|.++.+ .++..+++
T Consensus 1261 ve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999998875 433 456677899999999999999999999999999998898888877765 56788899
Q ss_pred HHHHHHHhhCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHCC
Q 003991 538 EAHLKAIQLDR-----NFLEAWGHLTQFYQDLANSEKALECLQQVLYI------------DKRFSKAYHLRGLLLHGLG 599 (781)
Q Consensus 538 ~~~~~al~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g 599 (781)
+.|...+.+.| .....|..+..+|.+-|+++.|+..+-..... .+.+++.++.....|...+
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 99998888777 67889999999999999999999544433222 4677888888888888655
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.80 E-value=3.8e-18 Score=181.65 Aligned_cols=233 Identities=15% Similarity=0.142 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 003991 417 ALIGRGTARAFQRELEAAISDFTEAIQSNP------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN-------SA 483 (781)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~ 483 (781)
.++.+|..+...|++++|+.+|++++...+ ....++..+|.++...|+++.|+.++++++.+.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 456677777778888888888887776532 23457777888888888888888888888776442 14
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCcccHH
Q 003991 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-----LDRNFLE 552 (781)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~ 552 (781)
.++..+|.++...|++++|+.++++++.+.+. ...++.++|.++...|++++|+.++++++. .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 46778888888888888888888888876321 245788899999999999999999999998 7787888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHCCC---HHHHHHHHHHhhccCCCCHHHHHH
Q 003991 553 AWGHLTQFYQDLANSEKALECLQQVLYIDK-----RFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLYL 624 (781)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 624 (781)
++..+|.++...|++++|+.++++++.+.+ .....+..++.++...++ +.+|+.++++. ...|....++..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 999999999999999999999999998743 334556778888888888 88888888873 333444678889
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991 625 RASCYHAIGEYREAIKDYDAALDLEL 650 (781)
Q Consensus 625 la~~~~~~g~~~~A~~~~~~al~~~p 650 (781)
+|.+|...|++++|..+|++++++..
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.80 E-value=9.1e-19 Score=200.34 Aligned_cols=187 Identities=13% Similarity=0.016 Sum_probs=170.2
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 003991 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKAL--------EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515 (781)
Q Consensus 444 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~ 515 (781)
.+|+++.+++..+ ...|++++|+..+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 4677777777666 77899999999999999 889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003991 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (781)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 595 (781)
+..+++.+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++ +..|+++++.+|++..+++++|.++
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~ 544 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR 544 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC
Q 003991 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634 (781)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 634 (781)
..+|++++|+..|+++++++|++..+++++|.++...|+
T Consensus 545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999987666
No 81
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=3.4e-18 Score=165.01 Aligned_cols=186 Identities=12% Similarity=0.049 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 528 (781)
.+.++..|..+...|++++|+..|++++..+|+++.+++..+. .... ...+.....+|.++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~~-------------~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKNS-------------EISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTTS-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cchh-------------hhhHHHHHHHHHHHH
Confidence 3445555556666666666666666666666555555544220 0000 000122233888888
Q ss_pred HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC--HHHHHH
Q 003991 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ--HKKAIK 606 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~ 606 (781)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++...|+ ...+..
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888876654 455667
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
.+.+++...|. ..+++.+|.++...|++++|+.+|+++++++|+..
T Consensus 146 ~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 146 DYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 77776654332 34677888888889999999999999999999753
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.79 E-value=3.8e-17 Score=173.64 Aligned_cols=276 Identities=12% Similarity=-0.004 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------A 483 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 483 (781)
..++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|...+++++...|.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 35667889999999999999999999999877542 267889999999999999999999999876543 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----c
Q 003991 484 DILHERGIVNFKFKDFNAAVEDLSACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----F 550 (781)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~ 550 (781)
.++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|..++++++...+. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 347889999999999999999999999874 233567788999999999999999999999998764 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHH-----HHHHHHHHCCCHHHHHHHHHHhhccCCCC----H
Q 003991 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYH-----LRGLLLHGLGQHKKAIKDLSSGLGIDPSN----I 619 (781)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~p~~----~ 619 (781)
..++..+|.++...|++++|..++++++...+ ..+..+. .++.++...|++++|...+++++...|.. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 56788999999999999999999999987633 2211121 34566889999999999999999887653 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCc
Q 003991 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP 691 (781)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 691 (781)
..+..+|.++...|++++|...+++++...+.... ......++...+..+...|++++|..++..+..+.+
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRL-MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 46788999999999999999999999988664321 122234666778888899999999999988876543
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.79 E-value=8.6e-18 Score=158.61 Aligned_cols=172 Identities=19% Similarity=0.216 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 003991 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562 (781)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 562 (781)
...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003991 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642 (781)
Q Consensus 563 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 642 (781)
..|++++|+.++++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|..++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888889999999999999999999
Q ss_pred HHHHhhccCcHH
Q 003991 643 DAALDLELDSME 654 (781)
Q Consensus 643 ~~al~~~p~~~~ 654 (781)
++++++.|++..
T Consensus 168 ~~~~~~~~~~~~ 179 (186)
T 3as5_A 168 KKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHCCCG
T ss_pred HHHHHcCCCchh
Confidence 999888887653
No 84
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.78 E-value=1.2e-16 Score=161.61 Aligned_cols=254 Identities=14% Similarity=0.124 Sum_probs=165.5
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991 389 IAQVNEGKYA-SAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (781)
Q Consensus 389 ~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (781)
......|.+. +|+.++.+++..+|++..+|...+.++...+. +++++.++..++..+|.+..+|...+.
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3344567776 78999999999999999999999999887765 566777777777777777777777777
Q ss_pred HHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 003991 458 ARAALGE--SVEAIQDLSKALEFEPNSADILHERGIVNFKFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (781)
Q Consensus 458 ~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 534 (781)
++...+. +++++.++.++++.+|.+..+|...+.+....|. ++++++++.+++..+|.+..+|..++.++...+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 7776663 6677777777777777777777777766666666 466666666666666666666666666665552100
Q ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-----------CCHHH
Q 003991 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL-----------GQHKK 603 (781)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----------g~~~~ 603 (781)
.+ +. .+. ...+.++++++++.+++..+|++..+|+.+..++... +.+++
T Consensus 197 ~~-----------~~-------~~~--~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~ 256 (331)
T 3dss_A 197 DS-----------GP-------QGR--LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS 256 (331)
T ss_dssp ------------------------C--CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred cc-----------cc-------ccc--cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence 00 00 000 0002345555555555555555555555444443333 35677
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 003991 604 AIKDLSSGLGIDPSNIECLYLRASCYH---AIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (781)
Q Consensus 604 A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 662 (781)
+++.+.++++..|++..++..++.+.. ..|..++...++.++++++|-...-|..+...
T Consensus 257 el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 257 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 888888888888877655544444332 24677888888888888888877766555433
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.78 E-value=1.5e-17 Score=157.02 Aligned_cols=171 Identities=15% Similarity=0.231 Sum_probs=128.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (781)
....++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.++++++...|.+..++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003991 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 539 (781)
...|++++|+.++++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhCccc
Q 003991 540 HLKAIQLDRNF 550 (781)
Q Consensus 540 ~~~al~~~~~~ 550 (781)
+++++...|++
T Consensus 167 ~~~~~~~~~~~ 177 (186)
T 3as5_A 167 FKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHcCCCc
Confidence 77777666654
No 86
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.78 E-value=1.9e-16 Score=160.30 Aligned_cols=209 Identities=14% Similarity=0.217 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003991 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (781)
Q Consensus 433 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 512 (781)
+|+..+.+++..+|++..+|...+.++...+.. ..| .- ....+++++.++..++..
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~------------~~~---~~---------~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETE------------KSP---EE---------SAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH------------SCH---HH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc------------ccc---hh---------hhHHHHHHHHHHHHHHHh
Confidence 566666666666666666666666666554431 000 00 000134555555555555
Q ss_pred CCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHH
Q 003991 513 DKENKSAYTYLGLALSSIGE--YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN-SEKALECLQQVLYIDKRFSKAYH 589 (781)
Q Consensus 513 ~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~ 589 (781)
+|.+..+|...+.++...++ +++++.++.++++.+|.+..+|...+.+....|. +++++.++.+++..+|.+..+|.
T Consensus 104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 55555555555555555552 5555555555555555555555555555555555 35566666666666666666666
Q ss_pred HHHHHHHHC--------------CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHH
Q 003991 590 LRGLLLHGL--------------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI-----------GEYREAIKDYDA 644 (781)
Q Consensus 590 ~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~ 644 (781)
.++.++... +.++++++++.+++..+|++..+|+.+..++... +.++++++.+++
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 655555544 4589999999999999999999998776666655 568999999999
Q ss_pred HHhhccCcHHHHHHHHHHHHHHH
Q 003991 645 ALDLELDSMEKFVLQCLAFYQKE 667 (781)
Q Consensus 645 al~~~p~~~~~~~~~~~~~~~~~ 667 (781)
++++.|++ .|..++.+.+..+
T Consensus 264 lle~~pd~--~w~l~~~~~~~~~ 284 (331)
T 3dss_A 264 LQELEPEN--KWCLLTIILLMRA 284 (331)
T ss_dssp HHHHCTTC--HHHHHHHHHHHHH
T ss_pred HHhhCccc--chHHHHHHHHHHh
Confidence 99999998 5666666655443
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.78 E-value=4.2e-18 Score=181.33 Aligned_cols=233 Identities=15% Similarity=0.097 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDP------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------- 447 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------- 447 (781)
...++.+|..++..|++++|+..|+++++..+ ..+.+++.+|.++...|+++.|+.++.+++...+.
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 34678899999999999999999999997632 24578999999999999999999999999987442
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCCCC
Q 003991 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKDFNAAVEDLSACVK-----LDKEN 516 (781)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-----~~p~~ 516 (781)
...++..+|.++...|++++|+.+|++++.+.+. ...++.++|.++...|++++|+.++++++. .+|..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 2457889999999999999999999999987432 245889999999999999999999999999 77878
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHH
Q 003991 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKRFSKAY 588 (781)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~ 588 (781)
..++..+|.++...|++++|+.++++++... +.....+..++.++...++ +.+|+.++++. ...|....++
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 8999999999999999999999999999984 3445567788888888888 88888888772 2334445678
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHhhcc
Q 003991 589 HLRGLLLHGLGQHKKAIKDLSSGLGI 614 (781)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~al~~ 614 (781)
..+|.++...|++++|+.+|+++++.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999875
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.77 E-value=4.6e-18 Score=172.59 Aligned_cols=202 Identities=14% Similarity=0.062 Sum_probs=129.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------
Q 003991 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACVKL------- 512 (781)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------- 512 (781)
...++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++..
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 34455555555555555555555555555442 333455666666666666666666666666655
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 003991 513 -DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--- 580 (781)
Q Consensus 513 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 580 (781)
+|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2444566677777777777777777777777766 5666677777777777777777777777777765
Q ss_pred ------CCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 581 ------DKRFSKAYHLRGLLLHGLGQ------HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 581 ------~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
.+.....+..++......+. +..+...++......|..+.++..+|.+|..+|++++|+.+|++++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444556666666655443 445555555555555666788999999999999999999999999875
Q ss_pred c
Q 003991 649 E 649 (781)
Q Consensus 649 ~ 649 (781)
.
T Consensus 282 ~ 282 (283)
T 3edt_B 282 R 282 (283)
T ss_dssp C
T ss_pred h
Confidence 3
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.77 E-value=1.2e-17 Score=161.06 Aligned_cols=185 Identities=19% Similarity=0.065 Sum_probs=98.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (781)
+++.++..|..++..|++++|+..|+++++.+|+++.+++..+. ... ....+.....+|.++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~-------------~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKN-------------SEISSKLATELALAY 64 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTT-------------SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cch-------------hhhhHHHHHHHHHHH
Confidence 46777888888888888888888888888888888888877210 000 000011222345555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHH
Q 003991 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--YKKAE 537 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~--~~~A~ 537 (781)
...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+ ...+.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555555444332 22334
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003991 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (781)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 583 (781)
..+.+++...|. ..+++.+|.++...|++++|+.+|++++.++|+
T Consensus 145 ~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 145 TDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 444444322221 223444555555555555555555555555554
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.77 E-value=6.4e-19 Score=160.01 Aligned_cols=139 Identities=15% Similarity=0.076 Sum_probs=68.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 003991 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (781)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 602 (781)
||.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH-HHHHHhhccCcHHHHHHHHH
Q 003991 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD-YDAALDLELDSMEKFVLQCL 661 (781)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~~~~ 661 (781)
+|+..|+++++++|+++.+++.+|.+|...|++++|... ++++++++|+++.++..++.
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ 142 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ 142 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 555555555555555555555555555555554444333 34555555555554444433
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.76 E-value=1.6e-18 Score=157.29 Aligned_cols=139 Identities=12% Similarity=-0.002 Sum_probs=54.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 003991 423 TARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502 (781)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 502 (781)
.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++++|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 33333344444444444443333333333334444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCcccHHHHHHHHHHH
Q 003991 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA-HLKAIQLDRNFLEAWGHLTQFY 561 (781)
Q Consensus 503 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~la~~~ 561 (781)
+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 4444444444444444444444444333333333222 2333333333333333333333
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=8.6e-17 Score=157.34 Aligned_cols=124 Identities=16% Similarity=0.140 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH---HHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE---AWK 453 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 453 (781)
++..++.+|..++..|++++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45667777777777788888888888777777765 357777777777777777777777777777776643 667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519 (781)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 519 (781)
.+|.++...+.. ....+..++..+...|++++|+..|+++++..|+++.+
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a 132 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT 132 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTH
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 777777655421 11123344455555566666666666666666665443
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.75 E-value=6.2e-18 Score=171.61 Aligned_cols=224 Identities=14% Similarity=0.078 Sum_probs=180.6
Q ss_pred HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCcHHHHHHH
Q 003991 392 VNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--------PSAGEAWKRR 455 (781)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l 455 (781)
...|++++|+.+|+++++. .|..+.++..+|.++...|++++|+.++++++... |....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467888888888888873 25567889999999999999999999999999873 5567789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHH
Q 003991 456 GQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--------DKENKSA 519 (781)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~ 519 (781)
|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++.. .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999988 4556788999999999999999999999999998 6666788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC---------cccHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCC
Q 003991 520 YTYLGLALSSIGEYKKAEEAHLKAIQLD---------RNFLEAWGHLTQFYQDLAN------SEKALECLQQVLYIDKRF 584 (781)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~ 584 (781)
+..+|.++...|++++|+.++++++... +.....+..++..+...+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999999999999999873 3344566666666665443 334444444433344566
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (781)
..++..+|.++...|++++|+.+|+++++..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 7789999999999999999999999998753
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=4.9e-17 Score=159.09 Aligned_cols=208 Identities=12% Similarity=0.040 Sum_probs=159.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 003991 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILH 487 (781)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 487 (781)
.+..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|+++++.+|+++ .+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46788889999999999999999999999988876 46888999999999999999999999999998875 3788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Q 003991 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567 (781)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 567 (781)
.+|.++...+.. ....+..++..+...|++++|+..|+++++..|++..++..+..+....+.
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-
Confidence 888888776532 122344567777788899999999999999999886554332222111110
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAIKDYDA 644 (781)
Q Consensus 568 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~ 644 (781)
.......+|.++...|++++|+..|+++++..|+++ .+++.+|.++..+|++++|+..+++
T Consensus 146 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 146 ----------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp ----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 122346789999999999999999999999999986 6899999999999999999999999
Q ss_pred HHhhccCcHH
Q 003991 645 ALDLELDSME 654 (781)
Q Consensus 645 al~~~p~~~~ 654 (781)
+....|++.+
T Consensus 210 l~~~~~~~~~ 219 (225)
T 2yhc_A 210 IAANSSNTLE 219 (225)
T ss_dssp HHHCCSCCCC
T ss_pred HHhhCCCchh
Confidence 9999988643
No 95
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.74 E-value=5.2e-16 Score=157.57 Aligned_cols=266 Identities=15% Similarity=0.053 Sum_probs=176.5
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRR 455 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 455 (781)
.+.-.+++-.........+..++|+.++.+++..+|++..+|..++.++...| .+++++.++..++..+|++..+|...
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR 129 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR 129 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 44444455444455555566678999999999999999999999999999888 59999999999999999999999999
Q ss_pred HHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991 456 GQARAAL-G-ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN--------AAVEDLSACVKLDKENKSAYTYLGL 525 (781)
Q Consensus 456 a~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~a~~~~p~~~~~~~~la~ 525 (781)
+.++... + ++++++..+.++++.+|.+..+|...+.++...+.++ ++++++.++++.+|.+..+|..++.
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~ 209 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY 209 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9888887 7 8888888888888888888888888888888777766 7777777777777777777777777
Q ss_pred HHHHcCC-------HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH
Q 003991 526 ALSSIGE-------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHG 597 (781)
Q Consensus 526 ~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~ 597 (781)
++...+. ++++++++.+++..+|++..+|+.+..++...|+...- .+ ...-|.. +....
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~--~~---~~~~~~~~~~~~~-------- 276 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP--IL---PAILPYTASKLNP-------- 276 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG--GH---HHHGGGTC-------------
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc--cc---ccccccccccccc--------
Confidence 7776665 45555555555555555555555555555444432000 00 0000000 00000
Q ss_pred CCCHHHHHHHHHHhhcc------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhccCcHHHHH
Q 003991 598 LGQHKKAIKDLSSGLGI------DPSNIECLYLRASCYHAIGEYREAIKDYDAAL-DLELDSMEKFV 657 (781)
Q Consensus 598 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~ 657 (781)
....-.......+.. .+..+.++..++.+|...|+.++|.++++... +.+|-....|.
T Consensus 277 --~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 277 --DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred --cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 001111111111111 24567777888888888888888888888776 56776655443
No 96
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.74 E-value=5.1e-16 Score=157.64 Aligned_cols=167 Identities=9% Similarity=-0.001 Sum_probs=157.3
Q ss_pred HHHHHHhhccCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHH
Q 003991 367 KFCVTRISKSKSISVDFRLSRGIAQVNEG-KYASAISIFDQILKEDPMYPEALIGRGTARAFQ-R-ELEAAISDFTEAIQ 443 (781)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~ 443 (781)
-.....++..+|.+..+|..++.++...| .+++++..++.++..+|.+..+|..++.++... + ++++++.++.+++.
T Consensus 74 L~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~ 153 (349)
T 3q7a_A 74 LELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL 153 (349)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 34567788999999999999999999999 599999999999999999999999999999998 8 99999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHH
Q 003991 444 SNPSAGEAWKRRGQARAALGESV--------EAIQDLSKALEFEPNSADILHERGIVNFKFKD-------FNAAVEDLSA 508 (781)
Q Consensus 444 ~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------~~~A~~~~~~ 508 (781)
.+|.+..+|...+.+....|.++ ++++++.++++.+|.+..+|...+.++...+. ++++++++++
T Consensus 154 ~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~ 233 (349)
T 3q7a_A 154 PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILK 233 (349)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 99999999999999999998887 99999999999999999999999999999987 7999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCH
Q 003991 509 CVKLDKENKSAYTYLGLALSSIGEY 533 (781)
Q Consensus 509 a~~~~p~~~~~~~~la~~~~~~g~~ 533 (781)
++..+|++..+|..+..++...|+.
T Consensus 234 aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 234 SIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998887764
No 97
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=6.7e-18 Score=175.07 Aligned_cols=261 Identities=15% Similarity=0.114 Sum_probs=111.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003991 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471 (781)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 471 (781)
...|+.++|.+++++. +++.+|..+|.++...|++++|++.|.++ .++..+...+..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4567788888888887 33468888888888888888888888764 4555777888888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Q 003991 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (781)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (781)
++.+.+..+ ++.+...++.+|.+.|++.++.++++. | +..+|..+|..+...|.|++|..+|.++
T Consensus 84 l~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 84 LQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 888877543 366777888888888888888877752 3 3358888888888888888888888866
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (781)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (781)
..|..+|.++.++|++++|++.++++ .++.+|...+.++...|+++.|..+... +..+ ++-...+..+|.+
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~---ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQD 219 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC---HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC---HhhHHHHHHHHHH
Confidence 46778888888888888888888887 3678888888888888888888766654 2233 4445567788888
Q ss_pred hCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCc
Q 003991 632 IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP 691 (781)
Q Consensus 632 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 691 (781)
.|++++|+.++++++.+++.+...+..++..+.. |..+++.+.+..|.....+.|
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k-----y~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSK-----FKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT-----TCHHHHHHHHHHHSTTSCHHH
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHhcCcH
Confidence 8888888888888888888887766555444332 456667777777777766666
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.72 E-value=1.5e-16 Score=139.29 Aligned_cols=118 Identities=17% Similarity=0.207 Sum_probs=100.3
Q ss_pred HHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (781)
Q Consensus 543 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (781)
+..++|+....+..+|..++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34578888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHH
Q 003991 623 YLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC 660 (781)
Q Consensus 623 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 660 (781)
+.+|.++..+|++++|+..|+++++++|++.+++..++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 88888888888888888888888888888888655443
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.71 E-value=1.1e-16 Score=164.80 Aligned_cols=207 Identities=14% Similarity=0.025 Sum_probs=118.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAF-QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472 (781)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (781)
.|++.+|..+++++.+..+.. ++. .+++++|..+|.++ |.+|...|++++|+.+|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 455666666666665554431 111 35566666655554 34555556666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---
Q 003991 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--- 549 (781)
Q Consensus 473 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--- 549 (781)
.+++.+.+.. ++... ...++..+|.+|..+|++++|+.+|++++.+.+.
T Consensus 60 ~~al~~~~~~--------------~~~~~--------------~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~ 111 (307)
T 2ifu_A 60 LQEAEAHANN--------------RSLFH--------------AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT 111 (307)
T ss_dssp HHHHHHHHHT--------------TCHHH--------------HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHc--------------CCHHH--------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 6665543211 00000 0223444455555555555555555555544321
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC--
Q 003991 550 ---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-- 618 (781)
Q Consensus 550 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 618 (781)
...++.++|.+|.. |++++|+.+|++++.+.+.. ..++..+|.++..+|++++|+.+|++++.+.|.+
T Consensus 112 ~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 112 PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 13455566666665 66666666666666554422 4556677777777777777777777777664432
Q ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 619 ----IECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 619 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
..++..+|.++..+|++++|+.+|++++ ++|+...
T Consensus 191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 2366777777777788888888888888 7776543
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.70 E-value=7.7e-17 Score=150.95 Aligned_cols=164 Identities=12% Similarity=-0.003 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 003991 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562 (781)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 562 (781)
.+.+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 345666777777777777777777777777777777777777777777777777777777777777 6555554444422
Q ss_pred -HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHhCCHHHHH
Q 003991 563 -DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYREAI 639 (781)
Q Consensus 563 -~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~ 639 (781)
..+...+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..+|.++..+|+.++|+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22333457888888888888888888888888888888888888888888888764 568888888888888888888
Q ss_pred HHHHHHHh
Q 003991 640 KDYDAALD 647 (781)
Q Consensus 640 ~~~~~al~ 647 (781)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
No 101
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=3.4e-17 Score=169.81 Aligned_cols=271 Identities=15% Similarity=0.108 Sum_probs=144.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (781)
.+..|..+|..+...|++++|++.|.++ .++..+...+.++...|++++|+.+++.+.+..++ +.+...++.+|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y 104 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHH
Confidence 3579999999999999999999999764 45678999999999999999999999999885444 67788899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003991 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 539 (781)
.++|++.++...++. | +...|..+|..+...|+|++|..+|.++ ..|..+|.++.++|++++|++.
T Consensus 105 ~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea 170 (449)
T 1b89_A 105 AKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG 170 (449)
T ss_dssp ----CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHH
Confidence 999999999888852 4 4469999999999999999999999976 4678899999999999999999
Q ss_pred HHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH
Q 003991 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (781)
Q Consensus 540 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (781)
++++ .++.+|...+.++...|+++.|..+... +... ++-...+..+|.+.|++++|+.++++++.+++.+.
T Consensus 171 ~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~---ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~ 241 (449)
T 1b89_A 171 ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHM 241 (449)
T ss_dssp HHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH
T ss_pred HHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC---HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH
Confidence 9999 4789999999999999999999877765 3244 44455788999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHhhcc-----CcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhh
Q 003991 620 ECLYLRASCYHA--IGEYREAIKDYDAALDLEL-----DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID 686 (781)
Q Consensus 620 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 686 (781)
.++..+|.+|.+ .++..+.++.|...+.+.| ++...|..+. ..+..-++++.|+..+-..
T Consensus 242 ~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~-------~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 242 GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV-------FLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH-------HHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-------HHHHhhchHHHHHHHHHhC
Confidence 999999998865 4678888888888887777 6666454443 4444556777776655333
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.70 E-value=4.7e-16 Score=136.10 Aligned_cols=118 Identities=16% Similarity=0.220 Sum_probs=89.1
Q ss_pred ccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q 003991 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454 (781)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 454 (781)
..+|..++.+..+|..++..|+|++|+..|+++++.+|.++.+++.+|.++..+|++++|+..|+++++++|++..+++.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 44566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003991 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (781)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (781)
+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777777777777777766655
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.69 E-value=9.6e-17 Score=150.27 Aligned_cols=163 Identities=11% Similarity=0.073 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
.+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 445666777777777777777777777777777777777777777777777777777777777777 6655544443322
Q ss_pred -HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 003991 461 -ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAE 537 (781)
Q Consensus 461 -~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~ 537 (781)
..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++...|+.++|+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233345666666666666666666666666666666666666666666666554 346666666666666666666
Q ss_pred HHHHHHH
Q 003991 538 EAHLKAI 544 (781)
Q Consensus 538 ~~~~~al 544 (781)
..|++++
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.69 E-value=7.7e-16 Score=156.48 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=113.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 003991 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (781)
Q Consensus 480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 559 (781)
|.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 55556666666666666666666666666666666666666666666666666666666666666666655555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHhCCHHH
Q 003991 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYRE 637 (781)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~ 637 (781)
.+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++ ..++..++.++..+|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 56666666666777777777777777777777777777777777777777777777666 6667777777777777777
Q ss_pred HHHHHHHHHh
Q 003991 638 AIKDYDAALD 647 (781)
Q Consensus 638 A~~~~~~al~ 647 (781)
|...|++++.
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.69 E-value=9.7e-16 Score=157.62 Aligned_cols=182 Identities=19% Similarity=0.123 Sum_probs=127.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHH
Q 003991 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKRRGQARAALGESVE 467 (781)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 467 (781)
.+++++|+..|.++ |.+|...|++++|+.+|.+++.+.+.. ..++..+|.+|..+|++++
T Consensus 29 ~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 94 (307)
T 2ifu_A 29 KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPE 94 (307)
T ss_dssp SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 58899999998876 678889999999999999999875422 3466677777777777777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003991 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547 (781)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (781)
|+.+|++++.+.+. .|+...+ ..++..+|.+|.. |++++|+.+|++++.+.
T Consensus 95 A~~~~~~Al~l~~~--------------~g~~~~~--------------a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~ 145 (307)
T 2ifu_A 95 AVQYIEKASVMYVE--------------NGTPDTA--------------AMALDRAGKLMEP-LDLSKAVHLYQQAAAVF 145 (307)
T ss_dssp GHHHHHHHHHHHHT--------------TTCHHHH--------------HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------cCCHHHH--------------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 77777777765321 1111110 1234455555555 66666666666666554
Q ss_pred ccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991 548 RNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (781)
Q Consensus 548 ~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (781)
|.. ..++.++|.++...|++++|+.+|++++.+.|.+ ..++..+|.++..+|++++|+.+|++++ .+
T Consensus 146 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 146 ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred HhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence 432 4567777777777777777777777777765432 3467788888888899999999999999 88
Q ss_pred CCCH
Q 003991 616 PSNI 619 (781)
Q Consensus 616 p~~~ 619 (781)
|...
T Consensus 225 p~~~ 228 (307)
T 2ifu_A 225 PGFS 228 (307)
T ss_dssp TTST
T ss_pred CCCC
Confidence 8643
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.68 E-value=7.5e-17 Score=145.38 Aligned_cols=120 Identities=7% Similarity=0.010 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (781)
Q Consensus 534 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (781)
-.+-..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.
T Consensus 19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 19 INSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 33445567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
++|+++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999875
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.68 E-value=1.2e-15 Score=155.00 Aligned_cols=168 Identities=10% Similarity=0.037 Sum_probs=147.1
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (781)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (781)
|.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 77788889999999999999999999999999999999999999999999999999999999998888877777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHH
Q 003991 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKK 535 (781)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~ 535 (781)
.+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++ ..++..++.++...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 78888888888888888888888888888888888888888888888888888888887 7788888888888888888
Q ss_pred HHHHHHHHHh
Q 003991 536 AEEAHLKAIQ 545 (781)
Q Consensus 536 A~~~~~~al~ 545 (781)
|...|++++.
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.67 E-value=9.9e-16 Score=172.39 Aligned_cols=164 Identities=10% Similarity=-0.018 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (781)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (781)
|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHhhccCCCCH
Q 003991 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL---GQHKKAIKDLSSGLGIDPSNI 619 (781)
Q Consensus 543 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~ 619 (781)
+++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++... |++++|+..|+++++.+|.+.
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence 55555555555555555555555555555555555555555555555555555555 555555555555555555544
Q ss_pred HHHHHHH
Q 003991 620 ECLYLRA 626 (781)
Q Consensus 620 ~~~~~la 626 (781)
..+..++
T Consensus 163 ~~~~~l~ 169 (568)
T 2vsy_A 163 EPFAFLS 169 (568)
T ss_dssp CHHHHTT
T ss_pred ChHHHhC
Confidence 4444333
No 109
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=1.5e-12 Score=145.99 Aligned_cols=223 Identities=10% Similarity=-0.033 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003991 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI-QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (781)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 510 (781)
+.....|++++...|..+.+|+..+..+...|+.++|. ..|++++...|.+..+|..++.+....|++++|...|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999997 99999999999999999999999999999999999999998
Q ss_pred HhC-----------CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcC-C
Q 003991 511 KLD-----------KE-----------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-DRNFLEAWGHLTQFYQDLA-N 566 (781)
Q Consensus 511 ~~~-----------p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g-~ 566 (781)
... |. ...+|...+....+.|..+.|...|.+|++. .+....+|...+.+....+ +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 752 43 3457888888888899999999999999987 4445677777777777665 4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003991 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLRASCYHAIGEYREAIKDYD 643 (781)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~ 643 (781)
++.|..+|+++++..|+++..+...+......|+.+.|..+|++++...|+ ...+|......-...|+.+.+...++
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998873 56788888888899999999999999
Q ss_pred HHHhhccCcHH
Q 003991 644 AALDLELDSME 654 (781)
Q Consensus 644 ~al~~~p~~~~ 654 (781)
++.+..|+++.
T Consensus 566 R~~~~~P~~~~ 576 (679)
T 4e6h_A 566 RFFEKFPEVNK 576 (679)
T ss_dssp HHHHHSTTCCH
T ss_pred HHHHhCCCCcH
Confidence 99999999865
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.65 E-value=2e-15 Score=169.86 Aligned_cols=165 Identities=15% Similarity=0.045 Sum_probs=137.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473 (781)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (781)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCccc
Q 003991 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---GEYKKAEEAHLKAIQLDRNF 550 (781)
Q Consensus 474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~ 550 (781)
++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++... |++++|+..++++++.+|..
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999988
Q ss_pred HHHHHHHH
Q 003991 551 LEAWGHLT 558 (781)
Q Consensus 551 ~~~~~~la 558 (781)
...+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 77776666
No 111
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.65 E-value=8.7e-16 Score=136.01 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--------hh-----hhhhHHHHHHhhhCHHHHHHHHHHHHhc--
Q 003991 34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE--------IQ-----DICNRAFCYSQLELHKHVIRDCDKALQL-- 98 (781)
Q Consensus 34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~--------~~-----~~~~rA~~~~~~~~~~~A~~~~~~al~~-- 98 (781)
..+......++.+|..|+|++|+..|++||+++|+ .. +++|+|.++.++|+|++|+..|++||++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 46677778999999999999999999999999965 22 7999999999999999999999999999
Q ss_pred -----CCCchhHH----HHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 003991 99 -----DPTLLQAY----ILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELL 150 (781)
Q Consensus 99 -----~p~~~~a~----~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 150 (781)
+|+++++| +++|.++..+|++++|+.+|++++++.|+.......+-.+....
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999988876655554444433
No 112
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.65 E-value=5.4e-16 Score=152.22 Aligned_cols=192 Identities=12% Similarity=0.069 Sum_probs=157.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHhCCCC-----------------
Q 003991 461 ALGESVEAIQDLSKALEFEPNSADILHER-------GIVNFKFKDFNAAVEDLSACVKLDKEN----------------- 516 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~a~~~~p~~----------------- 516 (781)
..+++..|...|.+++..+|...++|..+ +.++...++..+++..+.+.+.+.|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 35667777777777777777777777776 666666666677777777777655542
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHH
Q 003991 517 ----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHL 590 (781)
Q Consensus 517 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~ 590 (781)
..+...++.++...|++++|.+.|..++...|.+. +.+.+|.+++..+++++|+..|+.+....+.. ..+++.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 34556688999999999999999999998899888 99999999999999999999999776643221 358999
Q ss_pred HHHHHHHCCCHHHHHHHHHHhhccC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 591 RGLLLHGLGQHKKAIKDLSSGLGID--PS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
+|.++..+|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK 242 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence 9999999999999999999998654 55 5679999999999999999999999999999998 65
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.64 E-value=7.5e-16 Score=151.17 Aligned_cols=207 Identities=14% Similarity=0.071 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHhCCCcH-----
Q 003991 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTEAIQSNPSAG----- 449 (781)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~----- 449 (781)
...+..|.-+ ..+++..|...|.+++..+|...++|..+ +.++...++..+++..+.+.+.+.|...
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 3445555554 57888888888888888888888888888 7777777777788888888777665432
Q ss_pred ----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003991 450 ----------------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (781)
Q Consensus 450 ----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 513 (781)
++...++.++...|++++|...|..++...|.+. ..+.+|.+++..++|++|+.+|+.+....
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 3344466667777777777777777766666666 66777777777777777777776554432
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 003991 514 KEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588 (781)
Q Consensus 514 p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 588 (781)
+.. ..+++++|.++..+|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..++
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence 111 2356666777777777777777777666433 33 4556666677777777777777777777666666 5555
Q ss_pred HHH
Q 003991 589 HLR 591 (781)
Q Consensus 589 ~~l 591 (781)
..|
T Consensus 245 ~aL 247 (282)
T 4f3v_A 245 AAL 247 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 114
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=2e-12 Score=144.99 Aligned_cols=223 Identities=10% Similarity=-0.038 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV-EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (781)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (781)
......|++++...|..+.+|+..+..+...|+.++|. ..|++++...|.+...|..++......|+++.|...|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44568899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hhC-----------cc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCC-
Q 003991 545 QLD-----------RN-----------FLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRFSKAYHLRGLLLHGLGQ- 600 (781)
Q Consensus 545 ~~~-----------~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~- 600 (781)
... |. ...+|...+.+..+.|+.+.|...|.++++. .+....+|...|.+....++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 752 32 3567999999999999999999999999987 44556778777877777654
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC---cHHHHHHHHHHHHHHHHHHHHHhchh
Q 003991 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD---SMEKFVLQCLAFYQKEIALYTASKIN 677 (781)
Q Consensus 601 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (781)
++.|..+|+++++..|+++..+...+......|+.+.|..+|++++...|+ ... .+..-.......|..+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~-------lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKM-------IFQKVIFFESKVGSLN 558 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHH-------HHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHH-------HHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999884 222 1222222234567888
Q ss_pred hHHHHHhhhcCCCcccHH
Q 003991 678 SEFCWFDIDGDIDPLFKE 695 (781)
Q Consensus 678 ~A~~~~~~~~~~~p~~~~ 695 (781)
.+....+++.+..|....
T Consensus 559 ~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 559 SVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHhCCCCcH
Confidence 888888888877776433
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=5.6e-17 Score=168.78 Aligned_cols=203 Identities=21% Similarity=0.171 Sum_probs=144.1
Q ss_pred HccCHHHHHHHHHH----HHHhCCCcHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991 427 FQRELEAAISDFTE----AIQSNPSAGEAWKRRGQARA------------ALGESVEAIQDLSKALEFEPNSADILHERG 490 (781)
Q Consensus 427 ~~g~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la 490 (781)
..+.+++|+..+.. ++.+.|.. ++...|.... .++++++|+..+++++...|....++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 34578888888888 78888875 3433433321 233444455555555555554555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Q 003991 491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA 570 (781)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 570 (781)
.+++..|++++|+..|++++.+.|.+... .. .......|....++.++|.++...|++++|
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~------------~~-------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A 215 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSF------------SN-------EEAQKAQALRLASHLNLAMCHLKLQAFSAA 215 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCC------------CS-------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccC------------Ch-------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555555555443210 00 111122233378999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhhc
Q 003991 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA-IKDYDAALDLE 649 (781)
Q Consensus 571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 649 (781)
+.+|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++...
T Consensus 216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 216 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 55777776543
Q ss_pred c
Q 003991 650 L 650 (781)
Q Consensus 650 p 650 (781)
+
T Consensus 296 ~ 296 (336)
T 1p5q_A 296 A 296 (336)
T ss_dssp H
T ss_pred h
Confidence 3
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.63 E-value=1.3e-15 Score=137.13 Aligned_cols=111 Identities=13% Similarity=0.002 Sum_probs=54.3
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 003991 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (781)
Q Consensus 439 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 518 (781)
++++.++|++..+++.+|.++...|++++|+..|++++.++|.++.+|..+|.++...|++++|+.+|++++.++|+++.
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~ 105 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Q 003991 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (781)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (781)
+++++|.++..+|++++|+..|++++++.|+
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4444444444444444444444444444444
No 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.63 E-value=2.8e-15 Score=135.35 Aligned_cols=120 Identities=21% Similarity=0.135 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (781)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (781)
+...|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991 616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (781)
Q Consensus 616 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (781)
|+++.+++.+|.+|..+|++++|+..|+++++++|+++..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 9999999999999999999999999999999999988763
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.62 E-value=3.3e-14 Score=137.26 Aligned_cols=141 Identities=18% Similarity=0.094 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK----DFNAAVEDLSACVKLDKENKSAYTYLG 524 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~a~~~~p~~~~~~~~la 524 (781)
+.+++.+|.+|...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+++.. +.++.+++.+|
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg 92 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence 334444444444444444444444444332 233444444444433 3 34444444444422 23334444444
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003991 525 LALSS----IGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (781)
Q Consensus 525 ~~~~~----~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 594 (781)
.+|.. .+++++|+.+|+++.+..+ .++.+++.+|.+|.. .+++++|+.+|++++.. +.++.+++.+|.+
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~ 171 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMM 171 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 44433 3344444444444443333 123344444444443 33344444444444333 2233333334433
Q ss_pred H
Q 003991 595 L 595 (781)
Q Consensus 595 ~ 595 (781)
|
T Consensus 172 y 172 (212)
T 3rjv_A 172 F 172 (212)
T ss_dssp H
T ss_pred H
Confidence 3
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.62 E-value=1.6e-14 Score=139.44 Aligned_cols=178 Identities=13% Similarity=0.035 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 003991 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG----EYKKAEEAHL 541 (781)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 541 (781)
.+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3578899999876 68999999999999999999999999999875 689999999999998 7 9999999999
Q ss_pred HHHhhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----CCCHHHHHHHHHHh
Q 003991 542 KAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHG----LGQHKKAIKDLSSG 611 (781)
Q Consensus 542 ~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 611 (781)
++.+ +.++.+++.+|.+|.. .+++++|+.+|+++....+ .++.+++.+|.+|.. .+++++|+.+|+++
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9965 5789999999999998 8999999999999999887 358999999999999 89999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHhhccC
Q 003991 612 LGIDPSNIECLYLRASCYHAI-G-----EYREAIKDYDAALDLELD 651 (781)
Q Consensus 612 l~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~ 651 (781)
++. |.++.+++.+|.+|..- | ++++|+.+|+++.+....
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 998 67788999999999875 3 899999999999998643
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.62 E-value=2.8e-15 Score=151.77 Aligned_cols=199 Identities=13% Similarity=0.053 Sum_probs=143.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (781)
Q Consensus 446 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 525 (781)
|.+...+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777778888888888887777877778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 003991 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605 (781)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 605 (781)
++...|++++|+..|+++++.+|++...+........ ...++...........+.++.+...++.++ .|++++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 8888888888888888888777765322211111111 112223333333445667777777777655 58899999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhc
Q 003991 606 KDLSSGLGIDPSNIECLYLRASCYHAI-GEYREAIKDYDAALDLE 649 (781)
Q Consensus 606 ~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~ 649 (781)
+.++++++.+|++......++.++... +.+++|...|.++.+..
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999998888888888877776 67888999998887643
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.60 E-value=3.8e-15 Score=150.72 Aligned_cols=196 Identities=16% Similarity=0.092 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (781)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (781)
++..+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++++|++..+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 003991 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573 (781)
Q Consensus 494 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 573 (781)
...|++++|+..|++++.++|++...+........ ...++...........+.+..+...++.++ .|++++|++.
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~ 157 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEE 157 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHH
Confidence 44444444444444444444433111110111111 011112222222233444444444444433 4666666666
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHhhcc
Q 003991 574 LQQVLYIDKRFSKAYHLRGLLLHGL-GQHKKAIKDLSSGLGI 614 (781)
Q Consensus 574 ~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 614 (781)
++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6666666666665555555555554 5566677777666553
No 122
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.60 E-value=1.2e-14 Score=127.27 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCch-------
Q 003991 32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL------- 103 (781)
Q Consensus 32 ~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~------- 103 (781)
+...+...+..|+.+|..|+|++|+.+|++||+++ .++.+++++|.+|+++|+|++|+.+|+++|+++|++.
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 44566778899999999999999999999999999 6677899999999999999999999999999998764
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 003991 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALH 135 (781)
Q Consensus 104 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 135 (781)
++|+++|.++..+|++++|+..|+++|+..|+
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 58999999999999999999999999988775
No 123
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.59 E-value=6.8e-14 Score=123.72 Aligned_cols=133 Identities=32% Similarity=0.448 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 003991 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598 (781)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 598 (781)
++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 56677777777788888888888887777777777778888888888888888888888888887788888888888888
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
|++++|+..+++++...|.++.++..+|.++...|++++|..+++++++.+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888888888888888888888888888888888888888887775
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.59 E-value=2.5e-16 Score=163.87 Aligned_cols=152 Identities=17% Similarity=0.199 Sum_probs=98.2
Q ss_pred HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 003991 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---------------ADILHERGI 491 (781)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 491 (781)
.++++++|+..+++++...|....++..+|.++...|++++|+..|++++.+.|.+ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666667777777777777777777777777776666 456666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH-
Q 003991 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA- 570 (781)
Q Consensus 492 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A- 570 (781)
++...|++++|+.+|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHH
Q 003991 571 LECLQQVL 578 (781)
Q Consensus 571 ~~~~~~al 578 (781)
...|++++
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.59 E-value=1.5e-14 Score=129.76 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=109.8
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (781)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (781)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991 618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (781)
Q Consensus 618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (781)
++.+++.+|.++..+|++++|+.+|+++++++|+++....
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 9999999999999999999999999999999998876443
No 126
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.59 E-value=2.1e-14 Score=132.23 Aligned_cols=120 Identities=15% Similarity=0.088 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------c-cchhhhhhHHHHHHhhhCHHHHHHHH
Q 003991 32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQ------------------S-YEIQDICNRAFCYSQLELHKHVIRDC 92 (781)
Q Consensus 32 ~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~------------------~-~~~~~~~~rA~~~~~~~~~~~A~~~~ 92 (781)
....+...+..|+.+|..|+|++|+..|+++|.+ + .++.+++++|.|++++|+|++|+..|
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3456777889999999999999999999999998 4 34566999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh-HHHHHHHHHHHHHH
Q 003991 93 DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS-ADLKQFLELEELLT 151 (781)
Q Consensus 93 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~ 151 (781)
+++|+++|+++++|+++|.+|..+|++++|+..|++++++.|+.+ .....+..+.....
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 44555555554444
No 127
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.57 E-value=9.2e-14 Score=138.19 Aligned_cols=255 Identities=9% Similarity=-0.056 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (781)
|+.++ -.+..+..|+|..++.-.. +..|.+ ....+.+.++|..+|++.... ..+....+...++..+
T Consensus 14 ~~~lf-~ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~ 81 (310)
T 3mv2_B 14 PMDYF-NIKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFL 81 (310)
T ss_dssp -CCTH-HHHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHh
Confidence 34444 2455778899999998443 334433 356677888999999887421 1222223444444444
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHH
Q 003991 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAE 537 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~ 537 (781)
. ++ |+..+++.+...+.....+..+|.++...|++++|+.++.+.+..+| .+.+++..++.++..+|+.+.|.
T Consensus 82 ~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 82 D--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp T--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred c--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 2 22 88999998887666777788999999999999999999999999887 78899999999999999999999
Q ss_pred HHHHHHHhhCcc----cHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003991 538 EAHLKAIQLDRN----FLEAWGHL--TQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (781)
Q Consensus 538 ~~~~~al~~~~~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (781)
+.++++.+.+|+ +..+...+ +++.+..| ++.+|..+|+++....|+.......+. ++..+|++++|...++
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHH
Confidence 999999999883 22333444 54466666 999999999999888886222222233 8999999999999999
Q ss_pred Hhhcc----------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991 610 SGLGI----------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (781)
Q Consensus 610 ~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (781)
.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++-.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 88876 48899999999999999998 8999999999999999863
No 128
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.57 E-value=2.4e-13 Score=120.10 Aligned_cols=133 Identities=31% Similarity=0.443 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (781)
+++.+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 34455555555566666666666555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 003991 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515 (781)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~ 515 (781)
|++++|+..+++++...|.+..++..+|.++...|++++|...+++++..+|.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 55555555555555555555555555555555555555555555555555443
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=5.9e-14 Score=155.46 Aligned_cols=188 Identities=12% Similarity=0.063 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC--
Q 003991 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE----------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-- 565 (781)
Q Consensus 498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-- 565 (781)
..++|++.+.+++..+|++..+|...+.++...|+ +++++..+.++++.+|++..+|...+.++...+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34677888888888888888888888888888887 899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh------------
Q 003991 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI------------ 632 (781)
Q Consensus 566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------ 632 (781)
++++++.+++++++.+|.+..+|..++.++...| .++++++++.++++.+|.+..+|..++.++..+
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 7799999999999999999999999999999999 899999999999999999999999999999885
Q ss_pred --CCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhh------------HHHHHhhhcCCCcc
Q 003991 633 --GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINS------------EFCWFDIDGDIDPL 692 (781)
Q Consensus 633 --g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------A~~~~~~~~~~~p~ 692 (781)
+.+++|++++.+++.++|++..+|.++.. .+...++.++ |+.+|.++..++|.
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~-------ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRW-------LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHH-------HHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHH-------HHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 66899999999999999999996665544 3444455444 56668888877765
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.56 E-value=1e-14 Score=131.68 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=73.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003991 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (781)
Q Consensus 505 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 584 (781)
.|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45555556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (781)
+.+++.+|.++...|++++|+..|++++++.|+++.
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 666666666666666666666666666666655543
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=1.2e-14 Score=160.89 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=136.7
Q ss_pred HHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 392 VNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 392 ~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
...|.+ ++|+..+++++..+|++..+|..++.++...|+ +++++.++++++..+|++..+|...+.++.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444 567888888888888888888888888888776 666666666666666666666666666666
Q ss_pred HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003991 461 ALG--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (781)
Q Consensus 461 ~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 537 (781)
..+ ++++++..+.++++.+|.+..+|...+.++...| .++++++++.++++.+|.+..+|..++.++...+...++
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~- 197 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS- 197 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS-
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc-
Confidence 666 4466666666666666666666666665555555 555555555555555555555555555555443222100
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH------------HH
Q 003991 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK------------AI 605 (781)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~------------A~ 605 (781)
.+.. -...+.+++|++++.+++..+|++..+|+.++.++...+++++ |+
T Consensus 198 ---------~~~~----------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
T 1dce_A 198 ---------GPQG----------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLS 258 (567)
T ss_dssp ---------SSCC----------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEE
T ss_pred ---------cccc----------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEE
Confidence 0000 0001457899999999999999999999999999998888766 66
Q ss_pred HHHHHhhccCCC
Q 003991 606 KDLSSGLGIDPS 617 (781)
Q Consensus 606 ~~~~~al~~~p~ 617 (781)
..|.+++.++|.
T Consensus 259 ~~f~~~i~~~~~ 270 (567)
T 1dce_A 259 VCFSRPLTVGSR 270 (567)
T ss_dssp EEEEEEECTTBT
T ss_pred EEeccceecccc
Confidence 668888877765
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.55 E-value=1.6e-13 Score=132.56 Aligned_cols=132 Identities=23% Similarity=0.230 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 003991 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598 (781)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 598 (781)
.++.+|.++...|++++|+..|++++ .| ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 45667777777788888888777774 22 5677888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHhhccCCCCH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 599 GQHKKAIKDLSSGLGIDPSNI----------------ECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 599 g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
|++++|+..|+++++..|.+. .+++.+|.++..+|++++|+..|+++++++|++.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 888888888888888777655 9999999999999999999999999999999874
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.1e-13 Score=119.41 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=95.0
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 003991 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (781)
Q Consensus 548 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (781)
|.....+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCHHHHHHHHHHHHhhc------cCcHHHHHHHH
Q 003991 628 CYHAIGEYREAIKDYDAALDLE------LDSMEKFVLQC 660 (781)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~ 660 (781)
++..+|++++|+..|+++++++ |++..++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~ 119 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHH
Confidence 8888888888888888888888 77766554443
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=3e-13 Score=118.36 Aligned_cols=116 Identities=19% Similarity=0.247 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (781)
..+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34667777788888888888888888888888888888888888888888888888888888888888888788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Q 003991 459 RAALGESVEAIQDLSKALEFE------PNSADILHERGIVNF 494 (781)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~ 494 (781)
+...|++++|+..|+++++++ |.+..++..++.+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 888888888888888888777 777777666665543
No 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.52 E-value=3.1e-13 Score=124.58 Aligned_cols=119 Identities=16% Similarity=0.115 Sum_probs=110.0
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 003991 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626 (781)
Q Consensus 547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 626 (781)
.+.....++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+.+|++++.++|+++.+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 003991 627 SCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665 (781)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 665 (781)
.+|..+|++++|+.+|+++++++|++..+++..++....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999877666555433
No 136
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.52 E-value=1.1e-13 Score=124.19 Aligned_cols=120 Identities=14% Similarity=0.123 Sum_probs=88.9
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (781)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (781)
.+..++...|.++..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34445566677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 488 (781)
+.+++.+|.++...|++++|+..|++++.+.|.++.....
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 7777777777777777777777777777777766554433
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.51 E-value=1.9e-13 Score=127.88 Aligned_cols=128 Identities=20% Similarity=0.255 Sum_probs=104.8
Q ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHCCCH--HHH
Q 003991 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL-LHGLGQH--KKA 604 (781)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~--~~A 604 (781)
...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4567788888888888888888888888888888888888888888888888888888888888888 7788888 888
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991 605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (781)
Q Consensus 605 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (781)
+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|++...
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 888888888888888888888888888888888888888888888887653
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.50 E-value=7.5e-13 Score=135.05 Aligned_cols=165 Identities=12% Similarity=0.070 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HH
Q 003991 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LE 552 (781)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~ 552 (781)
.+...+..+...|++++|+..+.+++...+... ..+..+|.++...|++++|+..+++++...+.. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455555556666666666666665554432 234456667777777777777777777654332 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CH
Q 003991 553 AWGHLTQFYQDLANSEKALECLQQVL---YIDKRFS----KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NI 619 (781)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al---~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~ 619 (781)
++..+|.+|...|++++|+.+|++++ ...|++. .+++++|.+|..+|++++|+.++++++.+.+. .+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77778888888888888888888877 4445432 57788888888888888888888888876432 26
Q ss_pred HHHHHHHHHHHHhCCHHHH-HHHHHHHHhhc
Q 003991 620 ECLYLRASCYHAIGEYREA-IKDYDAALDLE 649 (781)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 649 (781)
.+++.+|.+|..+|++++| ..+|++++.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 7888999999999999999 77788888764
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.50 E-value=2.7e-14 Score=136.37 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (781)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (781)
.++.++|.++...|++++|+.++++++..+|.++.+++.+|.++..+|++++|+..|++++.++|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 55566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hCCHHHHH
Q 003991 632 IGEYREAI 639 (781)
Q Consensus 632 ~g~~~~A~ 639 (781)
+++..++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 65555554
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.50 E-value=6.8e-13 Score=122.27 Aligned_cols=133 Identities=16% Similarity=0.172 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003991 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (781)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (781)
+..+..+|.++...|++++|+..|.+++...|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HCCCHHHHHHHHHHhhccCCCCHHHHHHH--HHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLR--ASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
..|++++|+.+|++++..+|.+..++..+ +..+...|++++|+..+.++..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 88888888888888888888888777444 444777888888888888776553
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.50 E-value=1.6e-12 Score=132.53 Aligned_cols=161 Identities=9% Similarity=-0.002 Sum_probs=76.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 003991 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADIL 486 (781)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 486 (781)
...+..+...|++++|+..+.+++...+... ..++.+|.++...|++++|+.++++++...+.. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3344444444444444444444444433322 122334444444455555555555555433222 3344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------cHHH
Q 003991 487 HERGIVNFKFKDFNAAVEDLSACV---KLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEA 553 (781)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~a~---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~ 553 (781)
..+|.+|...|++++|+.+|++++ ...|++. .++.++|.+|..+|++++|+.++++++...+. ...+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 555555555555555555555555 2233321 34555555555555555555555555554322 1445
Q ss_pred HHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 003991 554 WGHLTQFYQDLANSEKA-LECLQQVLY 579 (781)
Q Consensus 554 ~~~la~~~~~~g~~~~A-~~~~~~al~ 579 (781)
++++|.+|...|++++| ..++++++.
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 55555555555555555 444555543
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.49 E-value=1.7e-13 Score=128.22 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=113.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH--HH
Q 003991 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA-RAALGES--VE 467 (781)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~ 467 (781)
+...|++++|+..++++++.+|.++.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999 7888998 99
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520 (781)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 520 (781)
|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.+....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999999999998875443
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.49 E-value=1.4e-12 Score=120.17 Aligned_cols=131 Identities=19% Similarity=0.181 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+.++.+++..+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHH
Q 003991 461 ALGESVEAIQDLSKALEFEPNSADILHERG--IVNFKFKDFNAAVEDLSACVK 511 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~a~~ 511 (781)
..|++++|+.+|++++..+|.+..++..++ ..+...|++++|+..+.++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888888888877764443 346677777777777776654
No 144
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.49 E-value=9.1e-13 Score=127.27 Aligned_cols=133 Identities=19% Similarity=0.249 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
...++.+|..++..|++++|+..|++++ +| ++.+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4457788999999999999999999885 33 67889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 003991 461 ALGESVEAIQDLSKALEFEPNSA----------------DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~ 516 (781)
..|++++|+..|++++...|.+. .+++.+|.++...|++++|+..+++++...|++
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999999877765 788888888888888888888888888888875
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.48 E-value=1.3e-13 Score=131.73 Aligned_cols=147 Identities=12% Similarity=-0.048 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------------
Q 003991 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS------------- 585 (781)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------- 585 (781)
.....+......|+++++.+.+.......+.....+..+|..++..|++++|+..|++++...|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 3344556666777888888777776666667778888888888888888888888888888888776
Q ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 003991 586 ---KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (781)
Q Consensus 586 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 662 (781)
.++..+|.++...|++++|+.++++++..+|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.+
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999866655554
Q ss_pred HHH
Q 003991 663 FYQ 665 (781)
Q Consensus 663 ~~~ 665 (781)
+..
T Consensus 166 ~~~ 168 (198)
T 2fbn_A 166 VNK 168 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 146
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.47 E-value=2.9e-12 Score=127.43 Aligned_cols=224 Identities=8% Similarity=-0.067 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 003991 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (781)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (781)
...+.+.++++..|++.... ..+....+...++..+. ++ |+..+++.+...+.....+..+|.++..
T Consensus 46 ~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~ 112 (310)
T 3mv2_B 46 TLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAI 112 (310)
T ss_dssp HHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 45566677788888876421 12222334444444442 32 8888998887766667777899999999
Q ss_pred cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcC--
Q 003991 462 LGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIG-- 531 (781)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~g-- 531 (781)
.|++++|+.++.+.+..+| .+.+++..++.++...|+.+.|.+.++++.+.+|+ .......-+++....|
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~ 192 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE 192 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999887 77899999999999999999999999999999883 2233333355566666
Q ss_pred CHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHCC
Q 003991 532 EYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYI----------DKRFSKAYHLRGLLLHGLG 599 (781)
Q Consensus 532 ~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~g 599 (781)
++.+|...|+++....|+ ....+.+ ++..+|++++|...++.+++. +|+++.++.+++.+...+|
T Consensus 193 ~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg 269 (310)
T 3mv2_B 193 TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG 269 (310)
T ss_dssp TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 899999999999888886 3333333 899999999999999988776 4889999999988888899
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHH
Q 003991 600 QHKKAIKDLSSGLGIDPSNIECLY 623 (781)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~~~~ 623 (781)
+ +|.++++++.+.+|+++.+.-
T Consensus 270 k--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 270 L--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp C--TTHHHHHHHHHTTCCCHHHHH
T ss_pred h--HHHHHHHHHHHhCCCChHHHH
Confidence 7 899999999999999986543
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.46 E-value=1.4e-12 Score=114.52 Aligned_cols=123 Identities=22% Similarity=0.342 Sum_probs=94.1
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (781)
.|..+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++.+++...|.+..++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 34456677777777888888888888888888777777777777787777777787777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 003991 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 499 (781)
.++...|++++|+.++++++...|.+..++..++.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777777777766653
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.46 E-value=1e-12 Score=121.04 Aligned_cols=116 Identities=28% Similarity=0.330 Sum_probs=97.9
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (781)
.+..+..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|++..+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003991 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (781)
.++...|++++|+.+|+++++++|++...+...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 888888888888888888888888887766655544
No 149
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.46 E-value=4.9e-13 Score=118.37 Aligned_cols=105 Identities=13% Similarity=0.070 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CH-----HHHHHHHHHHHHCCCHHHHHHHHHHhhcc----
Q 003991 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-------FS-----KAYHLRGLLLHGLGQHKKAIKDLSSGLGI---- 614 (781)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 614 (781)
...+..+|..++..|++++|+..|++++.++|+ +. .+|.++|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 344556666666666666666666666666665 33 38888888888888888888888888888
Q ss_pred ---CCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991 615 ---DPSNIECL----YLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (781)
Q Consensus 615 ---~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (781)
+|+++.+| +++|.++..+|++++|+..|+++++++|++...
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999999999999999999988653
No 150
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.45 E-value=1.2e-12 Score=133.39 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=84.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHH
Q 003991 523 LGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKAYH 589 (781)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~ 589 (781)
+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++++|+.+|++++.. .+....+++
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 4555555555555555555555532221 234566666666666666666666666632 112244677
Q ss_pred HHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhc
Q 003991 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIG-EYREAIKDYDAALDLE 649 (781)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 649 (781)
++|.+|..+|++++|+.++++++++.+.. +.+++.+|.+|..+| .+++|+.+|++|+.+.
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88888888888888888888887764332 678999999999999 4699999999998764
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.45 E-value=7.8e-13 Score=116.12 Aligned_cols=117 Identities=23% Similarity=0.240 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (781)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (781)
..+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC
Q 003991 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634 (781)
Q Consensus 598 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 634 (781)
.|++++|+.+|++++...|+++.++..+|.++..+|+
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 4444444444444444444444444444444444443
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.45 E-value=2.2e-12 Score=113.75 Aligned_cols=120 Identities=23% Similarity=0.346 Sum_probs=77.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (781)
Q Consensus 446 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 525 (781)
|.....++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++..+|.+..++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Q 003991 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (781)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 565 (781)
++...|++++|+.++++++..+|.+..++..++.++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666665544
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-12 Score=115.53 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=101.7
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (781)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (781)
..|..+..++.+|..++..|++++|+..|+++++.+|.+..+++.+|.++...|++++|+.++++++..+|.+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 35666788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 003991 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (781)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 498 (781)
|.++...|++++|+.+|++++..+|.+..++..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888887888888887776553
No 154
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.44 E-value=3.3e-12 Score=130.24 Aligned_cols=159 Identities=11% Similarity=0.006 Sum_probs=104.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 003991 456 GQARAALGESVEAIQDLSKALEFEPNSAD------ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYL 523 (781)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l 523 (781)
+..+...|++++|...+++++...+..+. .+..+|.++...+++++|+.++++++...+.. ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34445555555555555555554444332 22345666666667777777777776643322 2356777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHH
Q 003991 524 GLALSSIGEYKKAEEAHLKAIQL-------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHL 590 (781)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~ 590 (781)
|.+|...|++++|+.+|+++++. .+....++.++|.+|...|++++|+.++++++.+.+.. +.+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777777777777777777742 22335577788888888888888888888887765432 677888
Q ss_pred HHHHHHHCCC-HHHHHHHHHHhhcc
Q 003991 591 RGLLLHGLGQ-HKKAIKDLSSGLGI 614 (781)
Q Consensus 591 la~~~~~~g~-~~~A~~~~~~al~~ 614 (781)
+|.++..+|+ +++|+.+|++++.+
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888888884 68888888888764
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.44 E-value=4.2e-13 Score=117.47 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 664 (781)
..++..+|.++...|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++...+..++.+++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHHhchhhHHHHHhhhcCCCccc
Q 003991 665 QKEIALYTASKINSEFCWFDIDGDIDPLF 693 (781)
Q Consensus 665 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 693 (781)
.+|.++...+++++|+.+|.+++...|+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 99999999999999999999998877753
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.44 E-value=8.3e-13 Score=114.37 Aligned_cols=102 Identities=18% Similarity=0.026 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (781)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (781)
.++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46778888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCcHH
Q 003991 633 GEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 633 g~~~~A~~~~~~al~~~p~~~~ 654 (781)
|++++|+..|+++++++|++..
T Consensus 99 g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999998887653
No 157
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.42 E-value=1.4e-13 Score=149.43 Aligned_cols=161 Identities=22% Similarity=0.211 Sum_probs=124.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (781)
.++++++|+..++.++...|.....+..+|..++..|++++|+..|++++.+.|.+.... .+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------~~------ 307 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS------------EK------ 307 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC------------HH------
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC------------hH------
Confidence 455677777777777777777777788888888888888888888888887777653210 00
Q ss_pred HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH
Q 003991 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (781)
Q Consensus 541 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (781)
...+..+....++.++|.++..+|++++|+.+|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus 308 -~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 308 -ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 0112233446788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHH
Q 003991 621 CLYLRASCYHAIGEYREAIK 640 (781)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~ 640 (781)
++..++.++..+|++++|..
T Consensus 387 a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887765
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.42 E-value=7.8e-12 Score=108.56 Aligned_cols=112 Identities=29% Similarity=0.356 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 003991 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598 (781)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 598 (781)
++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (781)
Q Consensus 599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (781)
|++++|+.+|++++..+|+++.++..++.++.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 91 GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44444444444444444444444444444333
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.42 E-value=5.6e-12 Score=111.95 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=93.5
Q ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 003991 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625 (781)
Q Consensus 546 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 625 (781)
..|..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45667888888899999999999999999999988898888999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 626 ASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 626 a~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
|.++..+|++++|+..|+++++++|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999998887
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=1e-11 Score=134.41 Aligned_cols=200 Identities=9% Similarity=0.014 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----------------EALIGRGTARAFQRELEAAISDFTEAIQ 443 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (781)
|...+..|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|.+++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677889999999999999999999999887642 3688999999999999999999999988
Q ss_pred hCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003991 444 SNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEP------NSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (781)
Q Consensus 444 ~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 511 (781)
..+... .+...++.++...|+++.|+.++++++...+ ....++..+|.++...|++++|+..+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 655432 3456678888888999999999999987643 2267889999999999999999999999987
Q ss_pred hC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 512 LD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVL 578 (781)
Q Consensus 512 ~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al 578 (781)
.. +....++..++.+|...|++++|..++++++...+.. ...+..+|.++...+++.+|..+|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 62 2336789999999999999999999999998764321 4567788999999999999999999998
Q ss_pred hh
Q 003991 579 YI 580 (781)
Q Consensus 579 ~~ 580 (781)
..
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.40 E-value=1.4e-11 Score=106.92 Aligned_cols=109 Identities=32% Similarity=0.451 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (781)
.++.+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 33333444444444444444444444333333333333444443444444444444433333333333333333333333
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991 463 GESVEAIQDLSKALEFEPNSADILHERGI 491 (781)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (781)
|++++|+.++++++...|.++.++..++.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 91 GDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 33333333333333333333333333333
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.40 E-value=4.4e-12 Score=112.61 Aligned_cols=116 Identities=21% Similarity=0.217 Sum_probs=79.9
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (781)
.+.++..++.+|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..+++++..+|+++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHH
Q 003991 457 QARAALGESVEAIQDLSKALEFEPN-----SADILHERGIV 492 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~ 492 (781)
.++...|++++|+..|++++...|+ +..+...+..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 7777777777777777777776665 44444444443
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.40 E-value=2.7e-12 Score=111.14 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (781)
.++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 003991 463 GESVEAIQDLSKALEFEPNSA 483 (781)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~ 483 (781)
|++++|+..++++++.+|.+.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 999999999999998888664
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.39 E-value=2.8e-13 Score=147.15 Aligned_cols=144 Identities=16% Similarity=0.173 Sum_probs=87.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHH
Q 003991 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---------------GEAWKRRGQA 458 (781)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 458 (781)
.+++++|+..|+.+++..|..+.++..+|.+++..|+|++|+..|.+++.+.|.+ ..++.++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777788888888888888888888888888877776 3455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003991 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (781)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 537 (781)
+..+|++++|+.+|++++.++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...+++++|.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555544443
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.39 E-value=1.6e-11 Score=105.30 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 55677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (781)
..|++++|+..++++++.+|.++.++..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 777777777777777777777777776666553
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.39 E-value=1.1e-11 Score=106.39 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (781)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (781)
+..++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991 631 AIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (781)
Q Consensus 631 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (781)
..|++++|...|+++++++|+++..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 66666666666666666666666544433
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.38 E-value=4e-12 Score=116.74 Aligned_cols=72 Identities=19% Similarity=0.128 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 582 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
|....++.++|.++..+|++++|+..+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++
T Consensus 60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 333444444455555555555555555555555555555555555555555555555555555555555444
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.35 E-value=7.3e-12 Score=119.73 Aligned_cols=159 Identities=13% Similarity=0.042 Sum_probs=112.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCcccHHHHHHHHHHHHHcCCH
Q 003991 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ------LDRNFLEAWGHLTQFYQDLANS 567 (781)
Q Consensus 494 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~~~~~~~~~~la~~~~~~g~~ 567 (781)
+..|++++|...++......+....++..+|.++...|++++|+.++++++. ..+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 3456677777644443332224566777777777777777777777777777 3344567778888888888888
Q ss_pred HHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC--CC----HHHHHHHHHHHHHhCC
Q 003991 568 EKALECLQQVLYI---DKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SN----IECLYLRASCYHAIGE 634 (781)
Q Consensus 568 ~~A~~~~~~al~~---~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~ 634 (781)
++|+.++++++.. .+++ ..++..+|.++...|++++|+.++++++...+ .+ ..++..+|.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888888776 3322 45677888888888888888888888886532 22 2456889999999999
Q ss_pred HHHHHHHHHHHHhhccCc
Q 003991 635 YREAIKDYDAALDLELDS 652 (781)
Q Consensus 635 ~~~A~~~~~~al~~~p~~ 652 (781)
+++|..++++++++....
T Consensus 163 ~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999876543
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.34 E-value=1.8e-11 Score=117.01 Aligned_cols=60 Identities=13% Similarity=0.021 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLY 579 (781)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 579 (781)
+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444444444444444444444444332110 12234444444444444444444444443
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.33 E-value=2.7e-11 Score=106.18 Aligned_cols=111 Identities=20% Similarity=0.231 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHH
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRG 456 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 456 (781)
.++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 456677777777777777777777777777776 677777777777777777777777777777777 67777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (781)
.++...|++++|+..|++++...|+++.+......+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 7777777777777777777777777766555544443
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-11 Score=108.92 Aligned_cols=119 Identities=21% Similarity=0.230 Sum_probs=105.9
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q 003991 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 453 (781)
.+..+..++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+.++++++..+|.+..+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 46678889999999999999999999999999999987 788899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 003991 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (781)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (781)
.+|.++...|++++|+.+|++++..+|++..++..++.+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999999999888888877776543
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4e-11 Score=107.84 Aligned_cols=117 Identities=22% Similarity=0.220 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003991 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487 (781)
Q Consensus 411 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 487 (781)
+|.+...++.+|..+...|++++|+.+|++++...|++ ..++..+|.++...|++++|+..+++++...|.++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 46677778888888888888888888888888887776 677777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (781)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 527 (781)
.+|.++...|++++|+.+|++++..+|++..++..++.+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777777777777777777777777777777766666554
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.32 E-value=3.2e-12 Score=132.76 Aligned_cols=157 Identities=16% Similarity=0.133 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 003991 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (781)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 560 (781)
.....+..+|..++..|++++|+..|++++...|.+.. +...+++.++...+. ..++.++|.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence 34778999999999999999999999999999887541 233455555544332 2488999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHH-HHHhCCHHHHH
Q 003991 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC-YHAIGEYREAI 639 (781)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~ 639 (781)
+...|++++|+.+|++++.++|++..+++.+|.++..+|++++|+..|+++++++|+++.++..++.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 44567788899
Q ss_pred HHHHHHHhhccCcHH
Q 003991 640 KDYDAALDLELDSME 654 (781)
Q Consensus 640 ~~~~~al~~~p~~~~ 654 (781)
..|.+++...|+++.
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999999998764
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.31 E-value=5.9e-12 Score=107.06 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=67.6
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC--CHHHHHH
Q 003991 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS--NIECLYL 624 (781)
Q Consensus 547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 624 (781)
+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.+|+++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 34555556666666666666666666666666666666666666666666666666666666666666666 6666666
Q ss_pred HHHHHHHh-CCHHHHHHHHHHHHhhccCc
Q 003991 625 RASCYHAI-GEYREAIKDYDAALDLELDS 652 (781)
Q Consensus 625 la~~~~~~-g~~~~A~~~~~~al~~~p~~ 652 (781)
+|.++... |++++|+.++++++...|++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 66666666 66666666666666666654
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.30 E-value=3.7e-11 Score=126.06 Aligned_cols=123 Identities=19% Similarity=0.278 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cc-cchhhhhhHHHHHHhhhCHHHHHHH
Q 003991 29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLA----------------QS-YEIQDICNRAFCYSQLELHKHVIRD 91 (781)
Q Consensus 29 ~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~----------------~~-~~~~~~~~rA~~~~~~~~~~~A~~~ 91 (781)
.+.....+...+..++.++..|+|++|+..|+++++ ++ .++.++.++|.+++++|+|++|+..
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 444455566677888999999999999999999998 45 4566799999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 003991 92 CDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151 (781)
Q Consensus 92 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 151 (781)
|++||+++|+++++++++|.+|..+|++++|+..|++|+++.|+.+.....+..+.....
T Consensus 296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887766665555444
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.30 E-value=3e-12 Score=139.45 Aligned_cols=138 Identities=16% Similarity=0.195 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (781)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (781)
...+..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|+++.+++.+|.+|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44556677778888888888888888888888888888889999988999999999999999888888888899999999
Q ss_pred HhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHh-----------hhcCCCccc
Q 003991 631 AIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFD-----------IDGDIDPLF 693 (781)
Q Consensus 631 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-----------~~~~~~p~~ 693 (781)
.+|++++|+..|+++++++|++..++..++.+ ..+...+++++|+..+. ++..++|.+
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~-----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQEC-----NKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH-----HHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----HHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999888888755444333 22556788888888888 677666654
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.30 E-value=5.8e-11 Score=104.00 Aligned_cols=111 Identities=13% Similarity=0.007 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 003991 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERG 490 (781)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 490 (781)
+++.+|.++...|++++|+..|++++...|++. .+++.+|.++...|++++|+..|++++...|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 355666677777777777777777777666665 566666777777777777777777766666666 66666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991 491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (781)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 527 (781)
.++...|++++|+..|++++...|+++.+...+..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 6666666666666666666666666665544444333
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.29 E-value=3.4e-10 Score=122.45 Aligned_cols=200 Identities=11% Similarity=0.053 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----------------EAWKRRGQARAALGESVEAIQDLSKALE 477 (781)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 477 (781)
|.+.+..|..+...|++++|++.|.++++..|... .++..+|.+|...|++++|+.++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44567788899999999999999999999887642 3688999999999999999999999998
Q ss_pred hCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991 478 FEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (781)
Q Consensus 478 ~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (781)
..+.. ..+...++.++...|++++|+.++++++...+ ....++..+|.++...|++++|+..+.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 76543 23566778888889999999999999987632 2367888999999999999999999999887
Q ss_pred h------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CC----HHHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991 546 L------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RF----SKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (781)
Q Consensus 546 ~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (781)
. .+....++..+|.+|...|++++|..++++++...+ .. ...+..+|.++...|++.+|..+|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5 334478899999999999999999999999987643 22 3457788999999999999999999998
Q ss_pred cc
Q 003991 613 GI 614 (781)
Q Consensus 613 ~~ 614 (781)
..
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 179
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.28 E-value=1.1e-11 Score=109.52 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhhccCcHH
Q 003991 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAI-----------GEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~ 654 (781)
++|+..|+++++++|++..+|+++|.+|..+ |++++|+.+|++|++++|++..
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 3555555555555555555555555555444 4677777777777777777764
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.28 E-value=1.3e-12 Score=142.32 Aligned_cols=136 Identities=19% Similarity=0.217 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (781)
+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+++++++++|++..+++.+|.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45566778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHHhCCCC
Q 003991 461 ALGESVEAIQDLSKALEFEPNSADILHERGIV--NFKFKDFNAAVEDLS-----------ACVKLDKEN 516 (781)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~-----------~a~~~~p~~ 516 (781)
.+|++++|+..|+++++++|++..++..++.+ +...|++++|+..++ +++...|..
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999998888888888 888899999999999 777666654
No 181
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.28 E-value=9.7e-12 Score=109.77 Aligned_cols=109 Identities=12% Similarity=0.146 Sum_probs=96.7
Q ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS----------EKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (781)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (781)
.+.+.+++|+..++++++++|+++.+|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999998875 599999999999999999999999999998
Q ss_pred CC-----------CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991 598 LG-----------QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (781)
Q Consensus 598 ~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (781)
+| ++++|+.+|++|++++|++. .|.+++++.+..++.++
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~---------------------~y~~al~~~~ka~el~~ 142 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT---------------------HYLKSLEMTAKAPQLHA 142 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------------HHHHHHHHHHTHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHHHHhCHhccC
Confidence 75 89999999999999999974 55666666666666443
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.27 E-value=4.6e-11 Score=104.69 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------HHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------GEAW 452 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 452 (781)
.+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+.++++++...|.+ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 356677777777777777777777777777777777777777777777777777777777777776655 6677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (781)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (781)
..+|.++...|++++|+.+|++++...| ++..+..++.+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 7777777777777777777777777766 4666666655544
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.27 E-value=2.7e-11 Score=102.91 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 003991 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYHL 590 (781)
Q Consensus 513 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~ 590 (781)
+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 35555556666666666666666666666666666666666666666666666666666666666666666 6666666
Q ss_pred HHHHHHHC-CCHHHHHHHHHHhhccCCCC
Q 003991 591 RGLLLHGL-GQHKKAIKDLSSGLGIDPSN 618 (781)
Q Consensus 591 la~~~~~~-g~~~~A~~~~~~al~~~p~~ 618 (781)
+|.++... |++++|+.++++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 66666666 66666666666666666553
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.27 E-value=3e-11 Score=105.86 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=9.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 623 YLRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 623 ~~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
+.+|.++...|++++|+.+|++++++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33333333333333333333333333
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.27 E-value=5.4e-11 Score=124.78 Aligned_cols=140 Identities=17% Similarity=0.188 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 003991 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562 (781)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 562 (781)
...+..+|..++..|++++|+..|+++++..+..+ +...........|....++.++|.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888888888877543211 111233444567777888888888888
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003991 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK 640 (781)
Q Consensus 563 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 640 (781)
..|++++|+.++++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++++++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888888888877765
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.25 E-value=5.8e-12 Score=130.82 Aligned_cols=155 Identities=15% Similarity=0.072 Sum_probs=90.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (781)
.+..+..+|..++..|+|++|+..|++++...|.+.. +...|++.++...+. ..+++++|.++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 3677889999999999999999999999999987542 223444455443332 23677888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q 003991 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEYKKAEE 538 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~~~A~~ 538 (781)
..+|++++|+.+|++++.++|++..+++.+|.++...|++++|+..|+++++++|++..++..++.+ ....+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888877777 344566777778
Q ss_pred HHHHHHhhCcccH
Q 003991 539 AHLKAIQLDRNFL 551 (781)
Q Consensus 539 ~~~~al~~~~~~~ 551 (781)
.|.+++...|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 8888888777654
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.24 E-value=1.6e-11 Score=105.69 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=76.1
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003991 564 LANSEKALECLQQVLYI---DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK 640 (781)
Q Consensus 564 ~g~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 640 (781)
.|++++|+.+|++++.. +|+++.++..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 57788888888888888 577788888888888888888888888888888888888888889999999999999999
Q ss_pred HHHHHHhhccCcHH
Q 003991 641 DYDAALDLELDSME 654 (781)
Q Consensus 641 ~~~~al~~~p~~~~ 654 (781)
.|+++++..|+++.
T Consensus 83 ~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 83 LLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCcHH
Confidence 99999988888876
No 188
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.23 E-value=2e-08 Score=109.40 Aligned_cols=126 Identities=6% Similarity=-0.146 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003991 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-NSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (781)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 595 (781)
..+|...+......+..+.|...|.++ ...+.....|...|.+....+ +.+.|...|+.+++..|+.+..+...+...
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356777777777788899999999998 433335567777777766666 599999999999998898888888888888
Q ss_pred HHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
...|+.+.|...|+++. .....|......-...|+.+.+...+++++.
T Consensus 365 ~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999983 4578888888888888999999898888885
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.23 E-value=9e-11 Score=107.14 Aligned_cols=134 Identities=21% Similarity=0.276 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------H
Q 003991 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------S 585 (781)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~ 585 (781)
.++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 345556666666666666666666666554332 2466667777777777777777777776654322 4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
.++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.++++++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56777788888888888888888877765321 2457788899999999999999999988887554
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.22 E-value=1.7e-11 Score=105.45 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991 530 IGEYKKAEEAHLKAIQL---DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (781)
Q Consensus 530 ~g~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 606 (781)
.|++++|+..|+++++. +|+++.++..+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46677777777777777 466777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhccCCCCHHHHH
Q 003991 607 DLSSGLGIDPSNIECLY 623 (781)
Q Consensus 607 ~~~~al~~~p~~~~~~~ 623 (781)
.|++++...|+++.+..
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 77777777777765543
No 191
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=3.5e-08 Score=107.45 Aligned_cols=306 Identities=10% Similarity=-0.087 Sum_probs=164.1
Q ss_pred hHHHHHHHhhccCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH----HccCHHHHHH
Q 003991 365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEGK-YASAISIFDQILKE---DPMYPEALIGRGTARA----FQRELEAAIS 436 (781)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~----~~g~~~~A~~ 436 (781)
.....+.+.+...| +++.|..........++ .+.....|+.++.. +|.+...|......+. ..++.+.+..
T Consensus 32 ~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~ 110 (493)
T 2uy1_A 32 SLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRN 110 (493)
T ss_dssp HHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 33344555555555 66666666665555553 34455666666653 5566666666655543 2455666777
Q ss_pred HHHHHHHhCCCcHH-HHHHHHHHH-------------HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc--CC-
Q 003991 437 DFTEAIQSNPSAGE-AWKRRGQAR-------------AALGESVEAIQDLSKALEFEPN-SADILHERGIVNFKF--KD- 498 (781)
Q Consensus 437 ~~~~al~~~p~~~~-~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~--~~- 498 (781)
.|++++..-+.+.. .|......- .....+..|...++.+....+. +...|..+...-... +-
T Consensus 111 iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~ 190 (493)
T 2uy1_A 111 GYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLG 190 (493)
T ss_dssp HHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCC
T ss_pred HHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCc
Confidence 77777764222221 111111100 0111222333333333332221 223343333322211 00
Q ss_pred ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991 499 ----FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574 (781)
Q Consensus 499 ----~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 574 (781)
.......|++++...|..+..|...+..+...|+.+.|...|++++.. |.+...|...+... ..+ +. +
T Consensus 191 ~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~---~ 262 (493)
T 2uy1_A 191 GRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV---Y 262 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH---H
T ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH---H
Confidence 334566777777777777777777777777777777888888887777 77665555444331 111 11 1
Q ss_pred HHHHhh-------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC-CHHHHHH
Q 003991 575 QQVLYI-------------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG-EYREAIK 640 (781)
Q Consensus 575 ~~al~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~ 640 (781)
+++... .+....+|...+....+.+..+.|...|.++ ...+....+|...|.+....| +.+.|..
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp HHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHH
Confidence 111110 0111345666666666677788888888888 433335566766676666666 4888888
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991 641 DYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (781)
Q Consensus 641 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 687 (781)
.|+.+++..|++++.|... +......|..+.|...|.++.
T Consensus 342 ife~al~~~~~~~~~~~~y-------id~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 342 IFSSGLLKHPDSTLLKEEF-------FLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHHHHHCTTCHHHHHHH-------HHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888777643321 112234566666666666653
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.15 E-value=3.4e-10 Score=103.22 Aligned_cols=96 Identities=22% Similarity=0.271 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------cHH
Q 003991 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLE 552 (781)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~ 552 (781)
++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 33344444444444444444444444332211 233444444455555555555555444443211 133
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 553 AWGHLTQFYQDLANSEKALECLQQVLYI 580 (781)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (781)
++..+|.++...|++++|+.++++++.+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4444444555555555555555444443
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.1e-09 Score=92.64 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 664 (781)
..++..+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..|+++++++|++..... ...+++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI-RSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH-HHHHHH
Confidence 5678888999999999999999999999999999999999999999999999999999999999998732222 344677
Q ss_pred HHHHHHHHHhchhhHHHHHhh
Q 003991 665 QKEIALYTASKINSEFCWFDI 685 (781)
Q Consensus 665 ~~~~~~~~~~~~~~A~~~~~~ 685 (781)
..|.++...++++.|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 777777788888877776654
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.00 E-value=2.5e-10 Score=96.80 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHHH
Q 003991 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYL 624 (781)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 624 (781)
...+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45677777777777777777777777777777777777777777777777777777777777777777 777777
Q ss_pred HHHHHHHhCCHHHHHHHHHH
Q 003991 625 RASCYHAIGEYREAIKDYDA 644 (781)
Q Consensus 625 la~~~~~~g~~~~A~~~~~~ 644 (781)
+|.++..+|++++|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 77777777777666655443
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.99 E-value=3.7e-09 Score=90.29 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
+|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCcH
Q 003991 649 ELDSM 653 (781)
Q Consensus 649 ~p~~~ 653 (781)
.|+..
T Consensus 83 ~~~~~ 87 (115)
T 2kat_A 83 AQSRG 87 (115)
T ss_dssp HHHHT
T ss_pred ccccc
Confidence 88654
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.97 E-value=5.6e-09 Score=84.58 Aligned_cols=82 Identities=24% Similarity=0.297 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (781)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (781)
..++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred Hh
Q 003991 631 AI 632 (781)
Q Consensus 631 ~~ 632 (781)
.+
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.95 E-value=4.9e-09 Score=89.48 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (781)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (781)
|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++...
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45555555555565555666666666666666666666666666666656666666666666666666666666665554
Q ss_pred C
Q 003991 616 P 616 (781)
Q Consensus 616 p 616 (781)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 4
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.94 E-value=1.1e-08 Score=82.93 Aligned_cols=84 Identities=27% Similarity=0.366 Sum_probs=58.5
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (781)
..+..++.+|..++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+.++++++..+|.+..++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34566666777777777777777777777777777777777777777777777777777777777777777777666666
Q ss_pred HHHc
Q 003991 459 RAAL 462 (781)
Q Consensus 459 ~~~~ 462 (781)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.86 E-value=9.5e-09 Score=85.08 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=63.0
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 580 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+..|++++++.|+..+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 368888888899999999999999999999999999988889999999999999999999999999888776544
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.83 E-value=4.9e-09 Score=86.63 Aligned_cols=89 Identities=19% Similarity=0.256 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC
Q 003991 556 HLTQFYQDLANSEKALECLQQVLYIDKRFSK-AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634 (781)
Q Consensus 556 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 634 (781)
..|.++...|++++|+..|++++..+|+++. +++.+|.++...|++++|+..|+++++.+|+++.++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4555555666666666666666666666665 66666666666666666666666666666665555432 44
Q ss_pred HHHHHHHHHHHHhhccCc
Q 003991 635 YREAIKDYDAALDLELDS 652 (781)
Q Consensus 635 ~~~A~~~~~~al~~~p~~ 652 (781)
+.+++..|+++...+|++
T Consensus 77 ~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHhccCccc
Confidence 555666666666555554
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.82 E-value=9.5e-09 Score=84.90 Aligned_cols=90 Identities=19% Similarity=0.283 Sum_probs=78.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 003991 589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE-CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKE 667 (781)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 667 (781)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++..+|++++|+.+|+++++++|++..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH---------
Confidence 56789999999999999999999999999999 99999999999999999999999999999999885532
Q ss_pred HHHHHHhchhhHHHHHhhhcCCCccc
Q 003991 668 IALYTASKINSEFCWFDIDGDIDPLF 693 (781)
Q Consensus 668 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 693 (781)
+.+.+++.+|.++...+|+.
T Consensus 75 ------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 ------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp ------HHHHHHHHHHCCTTHHHHCC
T ss_pred ------HHHHHHHHHHHHHhccCccc
Confidence 55667777777776666543
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.80 E-value=1e-07 Score=84.18 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=6.2
Q ss_pred hCCHHHHHHHHHHHHh
Q 003991 632 IGEYREAIKDYDAALD 647 (781)
Q Consensus 632 ~g~~~~A~~~~~~al~ 647 (781)
.+++++|+.+|+++.+
T Consensus 110 ~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 110 VKNEKQAVKTFEKACR 125 (138)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 3333333333333333
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.79 E-value=5.9e-08 Score=98.05 Aligned_cols=158 Identities=16% Similarity=0.114 Sum_probs=112.5
Q ss_pred HHHHHhCCCCHHHH--HHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003991 473 SKALEFEPNSADIL--HERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547 (781)
Q Consensus 473 ~~al~~~p~~~~~~--~~la~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (781)
+++....|.+..+| +..|..+...+ ...+|+.+|+++++++|+++.++..++.++... .. ..
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-----------~~--~~ 250 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-----------HS--QH 250 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------HH--HS
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------hc--cC
Confidence 34555567665543 34455555443 457888888999999998888888887777610 00 11
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 003991 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (781)
Q Consensus 548 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (781)
+........ ...+... ..++...|..+.++..++..+...|++++|+..+++++.++|+ ...+..+|.
T Consensus 251 ~~~~~~~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~ 318 (372)
T 3ly7_A 251 PLDEKQLAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGK 318 (372)
T ss_dssp CCCHHHHHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred CCchhhHHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence 111110000 1222221 1234667899999999999998889999999999999999975 778889999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991 628 CYHAIGEYREAIKDYDAALDLELDSMEK 655 (781)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (781)
++...|++++|++.|++|+.++|..+..
T Consensus 319 ~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 319 VYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 9999999999999999999999988653
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.77 E-value=2.1e-07 Score=82.07 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=6.3
Q ss_pred CCCHHHHHHHHHHhhc
Q 003991 598 LGQHKKAIKDLSSGLG 613 (781)
Q Consensus 598 ~g~~~~A~~~~~~al~ 613 (781)
.+++++|+.+|+++.+
T Consensus 110 ~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 110 VKNEKQAVKTFEKACR 125 (138)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 3334444444443333
No 205
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.75 E-value=4.4e-07 Score=87.60 Aligned_cols=108 Identities=12% Similarity=0.029 Sum_probs=92.4
Q ss_pred hhCcccHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHC-----CCHHHHHH
Q 003991 545 QLDRNFLEAWGHLTQFYQD---L--A------NSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGL-----GQHKKAIK 606 (781)
Q Consensus 545 ~~~~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~ 606 (781)
+.+|+++++++..|.+... . | ....|...++++++++|+ +..+|..+|.+|... |+.++|..
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4568888887777766543 1 2 357889999999999998 567999999999995 99999999
Q ss_pred HHHHhhccCCCC-HHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhccCc
Q 003991 607 DLSSGLGIDPSN-IECLYLRASCYHA-IGEYREAIKDYDAALDLELDS 652 (781)
Q Consensus 607 ~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~ 652 (781)
+|+++++++|+. ...++.+|..+.. .|++++|..++++++..+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 9999999999988 499999999999999998874
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.75 E-value=4.5e-08 Score=80.97 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Q 003991 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548 (781)
Q Consensus 479 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (781)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3455555555555555555555555555555555555555555555555555555555555555555443
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.72 E-value=3.1e-07 Score=92.84 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=81.7
Q ss_pred cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (781)
.+..++.+|..++..++ +.+|+.+|+++++.+|+++.++..++.+|.....+ .|.......
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~-------------~~~~~~~~~--- 258 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ-------------HPLDEKQLA--- 258 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------------SCCCHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-------------CCCchhhHH---
Confidence 44555677777776654 47888999999999999888888888877621100 011110000
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 536 (781)
....+... ..++...|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|
T Consensus 259 -------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA 329 (372)
T 3ly7_A 259 -------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREA 329 (372)
T ss_dssp -------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred -------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 00111110 1122344555555555555555555666666666666555542 44555555555566666666
Q ss_pred HHHHHHHHhhCcccH
Q 003991 537 EEAHLKAIQLDRNFL 551 (781)
Q Consensus 537 ~~~~~~al~~~~~~~ 551 (781)
++.|.+|+.++|...
T Consensus 330 ~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 330 ADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHSCSHH
T ss_pred HHHHHHHHhcCCCcC
Confidence 666666666655543
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.72 E-value=6.2e-08 Score=104.46 Aligned_cols=123 Identities=14% Similarity=0.096 Sum_probs=79.9
Q ss_pred HHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHH
Q 003991 527 LSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-----DKRFS---KAYHL 590 (781)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~---~~~~~ 590 (781)
+..+|++++|+..+++++++ +|.....+.++|.+|..+|+|++|+.++++++.+ .|+++ ..+.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33455555555555555543 2233455666666666666666666666666643 33443 45677
Q ss_pred HHHHHHHCCCHHHHHHHHHHhhcc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 591 RGLLLHGLGQHKKAIKDLSSGLGI-----DPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
+|.+|..+|++++|+.+|++++++ .|+++ .....++.++..+|.+++|...|.++.+..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777754 45554 455678888888888888888888876543
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.71 E-value=4.9e-07 Score=87.34 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=77.7
Q ss_pred hCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHc-----CCHHHHHHH
Q 003991 512 LDKENKSAYTYLGLALSS-----IG------EYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDL-----ANSEKALEC 573 (781)
Q Consensus 512 ~~p~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~ 573 (781)
.+|++++++++.|.+... .| ....|...++++++++|+ +..+|..+|.+|... |+.++|.++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 356666666665555432 12 256778888888888887 466888888888874 888888888
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHhhccCCC
Q 003991 574 LQQVLYIDKRF-SKAYHLRGLLLHG-LGQHKKAIKDLSSGLGIDPS 617 (781)
Q Consensus 574 ~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~ 617 (781)
|++++.++|+. ..+++.+|..+.. .|++++|..++++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 88888888864 8888888888777 48888888888888887665
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.67 E-value=1.1e-07 Score=102.66 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=80.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc---
Q 003991 385 LSRGIAQVNEGKYASAISIFDQILKE-----DPMYP---EALIGRGTARAFQRELEAAISDFTEAIQS-----NPSA--- 448 (781)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~--- 448 (781)
+..+..+..+|+|++|+.+++++++. .|+++ .++.++|.+|..+|+|++|+.++++++.+ .|++
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34455566778888888888888764 23343 45677777777777777777777777764 3333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEF-----EPNSA---DILHERGIVNFKFKDFNAAVEDLSACVK 511 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~ 511 (781)
...+.++|.+|..+|++++|+.+|++++.+ .|+++ .....++.++..++.+++|...|.++.+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777654 34443 2344555555556666666666655543
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=9.9e-07 Score=76.81 Aligned_cols=93 Identities=16% Similarity=0.016 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHhhccC-C-CCHHHHHHHHHHHHHhCCHHHHHHH
Q 003991 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLSSGLGID-P-SNIECLYLRASCYHAIGEYREAIKD 641 (781)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 641 (781)
...+.+.|.+.+..++.+..+.+.+|+++.+.+ +.++++..++..++.+ | ++.++++++|..++++|+|++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456677788888888888999999999999988 6679999999999988 6 5688999999999999999999999
Q ss_pred HHHHHhhccCcHHHHHHH
Q 003991 642 YDAALDLELDSMEKFVLQ 659 (781)
Q Consensus 642 ~~~al~~~p~~~~~~~~~ 659 (781)
++++++++|++..+....
T Consensus 94 ~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 999999999998755443
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.43 E-value=1.2e-06 Score=70.67 Aligned_cols=73 Identities=19% Similarity=0.139 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 581 DKRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 581 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
+|+++..+..+|.++...++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 57778888888888765555 68888888888888888888888888888888888888888888888887743
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.41 E-value=1.5e-06 Score=70.07 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=45.5
Q ss_pred CCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 003991 377 KSISVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (781)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 447 (781)
.|.+++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.++++++..+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45566666666666654444 566666666666666666666666666666666666666666666666665
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.37 E-value=3.7e-06 Score=89.07 Aligned_cols=95 Identities=7% Similarity=0.018 Sum_probs=79.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc-----cc-hhh---hhhHHHHHHhhhCHHHHHHHHHHHHhc--------CCCchhHHH
Q 003991 45 KLCSLRNWSKAIRILDSLLAQS-----YE-IQD---ICNRAFCYSQLELHKHVIRDCDKALQL--------DPTLLQAYI 107 (781)
Q Consensus 45 ~~~~~g~~~~A~~~y~~ai~~~-----~~-~~~---~~~rA~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~ 107 (781)
+.-..|+|++|+..|.+++++. ++ |.. +.|+|.+|..+|+|++|+..++++|++ +|+-+..++
T Consensus 307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 3345689999999999999863 33 322 789999999999999999999999987 356677999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-----ccCChHH
Q 003991 108 LKGCAFSALGRKEEALSVWEKGYEH-----ALHQSAD 139 (781)
Q Consensus 108 ~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~ 139 (781)
++|.+|..+|++++|+..|++|+++ .|++|..
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999999999999999875 5666643
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=6.3e-06 Score=71.73 Aligned_cols=91 Identities=14% Similarity=0.010 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-c-ccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIG---EYKKAEEAHLKAIQLD-R-NFLEAWGHLTQFYQDLANSEKALECL 574 (781)
Q Consensus 500 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~ 574 (781)
..+.+.|.+.+..++.+..+.+.+|+++.+.+ +.++++..++..++.+ | ...++++++|..+++.|+|++|.+++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34445555555555555666666666666655 4446666666666655 4 34556666666666666666666666
Q ss_pred HHHHhhCCCCHHHHHH
Q 003991 575 QQVLYIDKRFSKAYHL 590 (781)
Q Consensus 575 ~~al~~~~~~~~~~~~ 590 (781)
+++++..|++..+...
T Consensus 95 ~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHCTTCHHHHHH
T ss_pred HHHHhcCCCCHHHHHH
Confidence 6666666665555443
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.35 E-value=5.9e-06 Score=87.73 Aligned_cols=100 Identities=10% Similarity=0.073 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-----cc-hhh---hhhHHHHHHhhhCHHHHHHHHHHHHhcC--------CCch
Q 003991 41 IELAKLCSLRNWSKAIRILDSLLAQS-----YE-IQD---ICNRAFCYSQLELHKHVIRDCDKALQLD--------PTLL 103 (781)
Q Consensus 41 ~~~~~~~~~g~~~~A~~~y~~ai~~~-----~~-~~~---~~~rA~~~~~~~~~~~A~~~~~~al~~~--------p~~~ 103 (781)
..+.++..+|+|++|+..|.+++++. ++ |.. +.|.|.+|..+|+|++|+..++++|.+. |.-+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 44567889999999999999999763 22 222 7899999999999999999999999773 5556
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----ccCChHHH
Q 003991 104 QAYILKGCAFSALGRKEEALSVWEKGYEH-----ALHQSADL 140 (781)
Q Consensus 104 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~ 140 (781)
..++.+|.+|..+|++++|+..|++|+++ .|++|...
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 69999999999999999999999999975 67777553
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.27 E-value=6.4e-06 Score=68.23 Aligned_cols=76 Identities=9% Similarity=-0.063 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-------PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (781)
+.-++.+|..++..|+|..|+.+|+.|++.. +..+.++..+|.++.++|+++.|+.+++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4456677777777777777777777777642 334678888888888888888888888888888888877654
Q ss_pred HHH
Q 003991 658 LQC 660 (781)
Q Consensus 658 ~~~ 660 (781)
++.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.26 E-value=1e-05 Score=67.04 Aligned_cols=78 Identities=15% Similarity=0.050 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKED-------PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 451 (781)
.++...+.+|..++..|+|..|+..|+++++.. +..+.++..+|.++..+|+++.|+.++++++.+.|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 346667777777888888888888887777642 2345666677777777777777777777777777777666
Q ss_pred HHHHH
Q 003991 452 WKRRG 456 (781)
Q Consensus 452 ~~~la 456 (781)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 55554
No 219
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.14 E-value=0.00049 Score=74.67 Aligned_cols=115 Identities=10% Similarity=-0.022 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991 533 YKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (781)
Q Consensus 533 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (781)
.++|.+.|.+..... +-+...|..+...|.+.|+.++|..+|++..... ..+...|..+-..|.+.|+.++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 455555555554432 1234555566666666666666666666655431 22355566666666666666666666666
Q ss_pred hhccCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 611 GLGIDP-SNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 611 al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
..+..- .+...|..+-..|.+.|+.++|.+++++..+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 654321 1355666666666666666666666666554
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.09 E-value=2.1e-05 Score=83.25 Aligned_cols=87 Identities=11% Similarity=0.136 Sum_probs=58.7
Q ss_pred HHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc---HHHHHHH
Q 003991 392 VNEGKYASAISIFDQILKE-----DPMYP---EALIGRGTARAFQRELEAAISDFTEAIQS-----NPSA---GEAWKRR 455 (781)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l 455 (781)
...|+|++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++.+ .|++ ...+.++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3457778888888777764 34443 45667777777777777777777777753 3333 3456677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 003991 456 GQARAALGESVEAIQDLSKALEF 478 (781)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~ 478 (781)
|.+|..+|++++|+.+|++++++
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 77777777777777777777654
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.03 E-value=2e-05 Score=83.62 Aligned_cols=62 Identities=16% Similarity=0.054 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991 552 EAWGHLTQFYQDLANSEKALECLQQVLYI-----DKRFS---KAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (781)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (781)
..+.++|.+|..+|++++|+.++++++.+ .|+++ ..++++|.+|..+|++++|+.+|+++++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444455555555555555555544432 22222 2344555555555555555555555544
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.98 E-value=0.00078 Score=73.08 Aligned_cols=162 Identities=10% Similarity=0.040 Sum_probs=109.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhCC-CCHHHH
Q 003991 418 LIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGE---------SVEAIQDLSKALEFEP-NSADIL 486 (781)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~p-~~~~~~ 486 (781)
+..+-..+.+.|+.++|+..|+++.... +-+...|..+-.++...+. .+.|...|+++....- -+...+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4455567777888888888888877643 2234455555555544332 5677777777765431 256677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Q 003991 487 HERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDL 564 (781)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~ 564 (781)
..+...+.+.|++++|...+++..... .-+...|..+-..|.+.|+.++|.+.|.+..+.. .-+...|..+...+.+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 777777777888888888887776653 2356667777777777788888888777776643 22456677777777777
Q ss_pred CCHHHHHHHHHHHHh
Q 003991 565 ANSEKALECLQQVLY 579 (781)
Q Consensus 565 g~~~~A~~~~~~al~ 579 (781)
|+.++|..++++.-+
T Consensus 189 g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 189 KNADKVYKTLQRLRD 203 (501)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888777777654
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.95 E-value=9.6e-05 Score=61.75 Aligned_cols=96 Identities=16% Similarity=0.018 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHhhccC-C-CCHHHHHHHHHHHHHhCCHHHHHH
Q 003991 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK---AIKDLSSGLGID-P-SNIECLYLRASCYHAIGEYREAIK 640 (781)
Q Consensus 566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 640 (781)
....+...|.+....++....+.+.+|+++.+..+... ++..++..+... | ..-+.++.+|..++++|+|++|..
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34556667777777777888999999999988887766 888898888876 4 456789999999999999999999
Q ss_pred HHHHHHhhccCcHHHHHHHHH
Q 003991 641 DYDAALDLELDSMEKFVLQCL 661 (781)
Q Consensus 641 ~~~~al~~~p~~~~~~~~~~~ 661 (781)
+++.+++..|++..+..+...
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999886655443
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.76 E-value=0.00053 Score=58.39 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (781)
Q Consensus 565 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (781)
++.++|...|+.++......+.+|...|..-.++|+...|...+.+++...|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 44444444444444444444444444444444444444444444444444443
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.73 E-value=0.00058 Score=57.04 Aligned_cols=88 Identities=13% Similarity=-0.028 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-c-ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK---AEEAHLKAIQLD-R-NFLEAWGHLTQFYQDLANSEKALECLQQ 576 (781)
Q Consensus 502 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (781)
+...|.+....++....+.+.+|+++....+... ++.+++..+... | .....++.+|..+++.|+|++|..+++.
T Consensus 20 ~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~ 99 (126)
T 1nzn_A 20 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 99 (126)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344444444444444555555555554444333 444555444443 3 2344455555555555555555555555
Q ss_pred HHhhCCCCHHHHH
Q 003991 577 VLYIDKRFSKAYH 589 (781)
Q Consensus 577 al~~~~~~~~~~~ 589 (781)
+++..|++..+..
T Consensus 100 lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 100 LLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHCTTCHHHHH
T ss_pred HHHhCCCCHHHHH
Confidence 5555555544433
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.68 E-value=0.00075 Score=57.47 Aligned_cols=109 Identities=14% Similarity=-0.017 Sum_probs=70.5
Q ss_pred hCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 478 FEPNSADILHERGIVNFKFKDF------NAAVEDLSACVKLDKEN--------KSAYTYLGLALSSIGEYKKAEEAHLKA 543 (781)
Q Consensus 478 ~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~a~~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (781)
+.|++++.|..........|+. ++-++.|++++..-|.. ...|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3455566666665555555555 55556666666554432 2344444533 4457777888888888
Q ss_pred HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003991 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (781)
Q Consensus 544 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 587 (781)
+......+.+|...|....++|+...|.+.+.+++...|.....
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 77766677778888888888888888888888888877765443
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.47 E-value=0.00056 Score=59.78 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchh---------hhhhHHHHHHhhhCHHHHHHHHHHHHhcC---CC--
Q 003991 37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQ---------DICNRAFCYSQLELHKHVIRDCDKALQLD---PT-- 101 (781)
Q Consensus 37 ~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~---------~~~~rA~~~~~~~~~~~A~~~~~~al~~~---p~-- 101 (781)
+..+..+.+++..|.|+.|+-.++.++.+. .++. .++..|.+++..|+|..|...|++||.+. |+
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445677788999999999999999988876 3333 47899999999999999999999987664 11
Q ss_pred --------------------chhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991 102 --------------------LLQAYILKGCAFSALGRKEEALSVWEKG 129 (781)
Q Consensus 102 --------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a 129 (781)
..+..|+++.||.++|++++|+..++.+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1268899999999999999999877664
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.37 E-value=0.0012 Score=57.62 Aligned_cols=134 Identities=12% Similarity=0.079 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCc
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKED---PMY------PEALIGRGTARAFQRELEAAISDFTEAIQSN---PSA 448 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~ 448 (781)
-..++.....++..|.|+.|+-....++... |+- ..++..+|.+++..++|..|...|+++++.. +..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456777888999999999999998876643 331 3478899999999999999999999998753 222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (781)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 527 (781)
......++. ...+.. ... .+.+.++.+.++.|+...+++++|+..++..-. ....+.+...||..|
T Consensus 100 ~s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CCccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 211100100 000000 011 133567788888888888888888887765321 223566666666654
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.06 E-value=0.011 Score=50.07 Aligned_cols=79 Identities=19% Similarity=0.130 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHHCCCH---HHHHHHHHHhhccCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991 582 KRFSKAYHLRGLLLHGLGQH---KKAIKDLSSGLGIDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (781)
Q Consensus 582 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (781)
.-.+.+.+++|+++.+..+. .+++..++..+...|. .-+.++.+|..+.++|+|++|.++.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45688889999999887755 4688889888888874 4678999999999999999999999999999999987654
Q ss_pred HHH
Q 003991 658 LQC 660 (781)
Q Consensus 658 ~~~ 660 (781)
+..
T Consensus 116 Lk~ 118 (144)
T 1y8m_A 116 LKS 118 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.97 E-value=0.0061 Score=50.97 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHCCCH---HHHHHHHHHhhccCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991 584 FSKAYHLRGLLLHGLGQH---KKAIKDLSSGLGIDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (781)
Q Consensus 584 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (781)
.+.+.+++|+++.+..+. .+++..++..+...|. .-+.++.+|..+.++|+|++|.++.+.+++..|++..+..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 477888888888877654 4688888888887774 467888899999999999999999999999999988765554
Q ss_pred HHH
Q 003991 660 CLA 662 (781)
Q Consensus 660 ~~~ 662 (781)
..+
T Consensus 119 ~~I 121 (134)
T 3o48_A 119 SMV 121 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.87 E-value=0.021 Score=47.71 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=69.0
Q ss_pred cCCccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 003991 376 SKSISVDFRLSRGIAQVNEGKY---ASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (781)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 451 (781)
....+++..+..|.++....+. ..++.+++.+++.+|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3556789999999999987755 4789999999998884 46789999999999999999999999999999999877
Q ss_pred HHHHHHH
Q 003991 452 WKRRGQA 458 (781)
Q Consensus 452 ~~~la~~ 458 (781)
......+
T Consensus 115 ~~Lk~~I 121 (134)
T 3o48_A 115 GALKSMV 121 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.78 E-value=0.017 Score=48.94 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=67.5
Q ss_pred CccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q 003991 378 SISVDFRLSRGIAQVNEGKY---ASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (781)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 453 (781)
..+++..|..|.++....+. .+++.+++.++...|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 57889999999999987755 4789999999998884 5578899999999999999999999999999999877655
Q ss_pred HHHH
Q 003991 454 RRGQ 457 (781)
Q Consensus 454 ~la~ 457 (781)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 233
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.47 E-value=0.33 Score=53.38 Aligned_cols=123 Identities=11% Similarity=-0.026 Sum_probs=70.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 003991 524 GLALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (781)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 599 (781)
+.......+.+.|...+.......+-+. ..+..++.-+...+...++...+.+......+ ......++...+..|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHCC
Confidence 3333444567777777766544322221 12223333333344345666666665543333 222333333344568
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
++..|...|.+.-......+...+.+|..+..+|+.++|..+|+++..
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888888766554444577778888888888888888888887765
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.22 E-value=0.19 Score=51.69 Aligned_cols=186 Identities=15% Similarity=0.069 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHH-----
Q 003991 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSA-----DILHERGIVNFK-FKDFNAAVEDLSACVKLDKENKS----- 518 (781)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~p~~~~----- 518 (781)
.+.+.+|.+|...|++++-.+++.......+.-+ .....+-..+.. .+..+.-++.+..+++...+...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999998888887655443332 223333333333 34555666666666654332211
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHH--
Q 003991 519 -AYTYLGLALSSIGEYKKAEEAHLKAIQLDR------NFLEAWGHLTQFYQDLANSEKALECLQQVLYID---KRFSK-- 586 (781)
Q Consensus 519 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~-- 586 (781)
.-..+|..|...|+|.+|.+.+.+..+.-. .-.+++..-..+|...+++.++...+.++.... +.+|.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 223678888888888888888887776421 125666777778888888888888888876442 12232
Q ss_pred --HHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCC-----HHHHHHHHHHHHHhCCH
Q 003991 587 --AYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPSN-----IECLYLRASCYHAIGEY 635 (781)
Q Consensus 587 --~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~ 635 (781)
....-|..+. ..++|.+|..+|-.++...... ..+...++.+-...++.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 3445577777 7888888888888876543221 23444555555555553
No 235
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.13 E-value=0.59 Score=40.47 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=58.7
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CC-------
Q 003991 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS----NP------- 446 (781)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p------- 446 (781)
|..++..+.++..++-.|.|..++-++.. -+...+.+..+.||....+|..|+..++..+.- +|
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 33346666777777777877777665543 345667777777777778888888777777731 22
Q ss_pred ------CcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003991 447 ------SAGE-AWKRRGQARAALGESVEAIQDLSKALEFEP 480 (781)
Q Consensus 447 ------~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p 480 (781)
.+.+ .+..+|.++.+.|+.++|+.++.......|
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 2222 334455555555666666666655555554
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.98 E-value=1.7 Score=44.55 Aligned_cols=130 Identities=10% Similarity=-0.079 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHH-ccCHHHHHHHHHHHHHhCCCc--H--H
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-----IGRGTARAF-QRELEAAISDFTEAIQSNPSA--G--E 450 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-----~~la~~~~~-~g~~~~A~~~~~~al~~~p~~--~--~ 450 (781)
..+.+.+|..|...|++++-..++......-+.-+.+. ..+-..+.. -+..+.-++.+..+++...+. . .
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888889999998888888776543322222211 111111111 122333333333333321111 0 1
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003991 451 --AWKRRGQARAALGESVEAIQDLSKALEFEPN--S----ADILHERGIVNFKFKDFNAAVEDLSACV 510 (781)
Q Consensus 451 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~a~ 510 (781)
.-..+|..|...|+|.+|...+.+....-.. + .+++.....+|...+++.++...+.++.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1224555556666666665555555442111 1 2334444445555555555555555443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.048 Score=61.04 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003991 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643 (781)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 643 (781)
..+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.+.
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 334445555555555555555555555555555555555555555555554443
No 238
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.78 E-value=0.86 Score=39.49 Aligned_cols=189 Identities=14% Similarity=0.026 Sum_probs=88.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----C--------
Q 003991 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL----D-------- 513 (781)
Q Consensus 446 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~-------- 513 (781)
|..++....++.++.-.|.+..++-++.. -+...+.+..+.||...++|..|+.+++..+.- +
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 33334455566666667777766655432 234555666666777777777777777776621 1
Q ss_pred -----CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCH-
Q 003991 514 -----KENKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ-DLANSEKALECLQQVLYIDKRFS- 585 (781)
Q Consensus 514 -----p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~- 585 (781)
|.+.+ .+..+|.++.+.|+.++|+.++.......|-.+.+-..+-.--. ..-+.+... ..+....
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~-------~~~~~~i~ 177 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVR-------QTGRRGIE 177 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC------------------CHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHH-------hhhhccch
Confidence 12221 23345555555555555555555555554433222111000000 000000000 0000000
Q ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH-HHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991 586 -KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC-LYLRASCYHAIGEYREAIKDYDAALDLELD 651 (781)
Q Consensus 586 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (781)
..+......+..... ...++-...-|.-... -...+.-|..+|-.++...+|...-+.+|.
T Consensus 178 ~~y~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 178 EEYVSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhhhhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 000001111111110 2334444555653332 234677788899999999999999888885
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.62 E-value=0.85 Score=52.70 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=61.4
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 003991 389 IAQVNEGKYASAIS-IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (781)
Q Consensus 389 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 467 (781)
......+++++|.. ++.. -| +...+...+..+...|.++.|+...+ ++... .......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence 34456788888866 4411 11 01222556666777777777776542 22211 233466788888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003991 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (781)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (781)
|.+..+. .++...|..+|..+...++++.|+.+|.++
T Consensus 671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8776532 246777888888888888888888877764
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.56 E-value=0.75 Score=53.14 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=20.0
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (781)
Q Consensus 494 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (781)
...|++++|.+..+. .++...|..+|..+...++++.|+.+|.+
T Consensus 663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444444321 23344444455555555555555544444
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.096 Score=58.64 Aligned_cols=115 Identities=11% Similarity=0.103 Sum_probs=84.3
Q ss_pred cCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--H-ccCHHHHHHHHHHHHHh--------CCCc----------HHH
Q 003991 394 EGK-YASAISIFDQILKEDPMYPEALIGRGTARA--F-QRELEAAISDFTEAIQS--------NPSA----------GEA 451 (781)
Q Consensus 394 ~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--~-~g~~~~A~~~~~~al~~--------~p~~----------~~~ 451 (781)
.++ ++.|+.++++..+.+|..... +..+.+.. . ..+--+|+..+.++++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 444 688999999999999876433 22222222 1 22344577777666542 2222 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003991 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (781)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (781)
+...+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 5566777888999999999999999999999999999999999999999999887765
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.85 Score=40.59 Aligned_cols=108 Identities=8% Similarity=-0.035 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (781)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (781)
+++..+.++ ...|+++.|.++.+++ ++...|..+|......|+++-|..+|.++-. +..+..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLY 70 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHH
Confidence 345555554 5578888888887765 5677888888888888888888888887532 22344556
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003991 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508 (781)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (781)
...|+.+.-...-+.+..... +.....+++..|+++++++.|.+
T Consensus 71 ~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 666766554444444333221 12223344556666666666644
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.45 E-value=7.2 Score=42.80 Aligned_cols=269 Identities=12% Similarity=0.010 Sum_probs=143.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003991 403 IFDQILKEDPMYPEALIGRGTARA---FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479 (781)
Q Consensus 403 ~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 479 (781)
-+...+..+|+.+..-........ ..+++..-+.++.. .|.+....+.........|+..+|.....++....
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 445556678888766554444332 35567666665443 37778877888888888888887877777766554
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH------
Q 003991 480 PNSADILHERGIVNFKFKDFNAAV--EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------ 551 (781)
Q Consensus 480 p~~~~~~~~la~~~~~~~~~~~A~--~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------ 551 (781)
...+.....+-..+...|...... .-+..++. .++......++... . ... .++.-...++..+|...
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~--~~~~~~a~~l~~~l-~-~~~-~~~a~~~~al~~~p~~~~~~~~~ 207 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMK--AGNTGLVTVLAGQM-P-ADY-QTIASAIISLANNPNTVLTFART 207 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHH--TTCHHHHHHHHHTC-C-GGG-HHHHHHHHHHHHCGGGHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHhC-C-HHH-HHHHHHHHHHHhChHhHHHHHhc
Confidence 433333333333333323221111 11111111 11111111111100 0 000 00000011111122211
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH
Q 003991 552 -------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA----YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (781)
Q Consensus 552 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (781)
.....++.......+.+.|...+.......+-+... +..++.-+...+...++...+.+......+ ..
T Consensus 208 ~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 286 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TS 286 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HH
T ss_pred cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hH
Confidence 122333444455668899999998876543333322 223333334445366777778776654443 33
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcC
Q 003991 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD 688 (781)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 688 (781)
....++...+..|+++.|..+|.+.-.-.++... ..|-.|..+...|+-.+|...|..+..
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r-------~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDE-------WRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHccccccccHh-------HHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4444445556789999999999876553333333 567778888889999999999988776
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.25 E-value=4.4 Score=42.65 Aligned_cols=183 Identities=8% Similarity=-0.046 Sum_probs=84.0
Q ss_pred ccCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----hcC
Q 003991 428 QRELEAAISDFTEAIQS------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF----KFK 497 (781)
Q Consensus 428 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----~~~ 497 (781)
.|+++.|++.+....+. .+....+...+..++...|+++...+++.-..........+...+..... ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36777777766444332 12345667777777778888877766665544443333332222221111 011
Q ss_pred CHHHHHHHHHHHHHhC----CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----c--ccHHHHHHHHHH
Q 003991 498 DFNAAVEDLSACVKLD----KE-------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD----R--NFLEAWGHLTQF 560 (781)
Q Consensus 498 ~~~~A~~~~~~a~~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~--~~~~~~~~la~~ 560 (781)
..+. ......+..- .+ .......++.++...|++.+|...+.....-. + .-.+.+.....+
T Consensus 109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 1110 0111111110 00 12233445566666666666665555543211 0 113444555555
Q ss_pred HHHcCCHHHHHHHHHHHHh---hCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991 561 YQDLANSEKALECLQQVLY---IDKRFS----KAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (781)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~---~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al 612 (781)
+...+++.+|...++++.. ..+..+ ..+...|.++...++|.+|..+|..++
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5555555555555555421 112222 223344555555555555555555444
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.10 E-value=0.45 Score=49.33 Aligned_cols=88 Identities=14% Similarity=0.056 Sum_probs=73.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc-----cchh---h---------------hhhHHHHHHhhhCHHHHHHHHHHHHhcC
Q 003991 43 LAKLCSLRNWSKAIRILDSLLAQS-----YEIQ---D---------------ICNRAFCYSQLELHKHVIRDCDKALQLD 99 (781)
Q Consensus 43 ~~~~~~~g~~~~A~~~y~~ai~~~-----~~~~---~---------------~~~rA~~~~~~~~~~~A~~~~~~al~~~ 99 (781)
+......|+...|+..+.+|+.+. ++.. . ...++.+++..|++.+|+..+..++..+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~ 201 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344567899999999999999885 1110 0 1135667889999999999999999999
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (781)
Q Consensus 100 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 130 (781)
|-.-.+|..+-.++...|+..+|+..|+++-
T Consensus 202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 202 PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999998864
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.03 E-value=1.2 Score=39.56 Aligned_cols=43 Identities=23% Similarity=0.132 Sum_probs=20.3
Q ss_pred HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (781)
..|+++.|.+..+.. ++...|..+|......|+++-|..+|.+
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344444444444332 3344455555555555555555555544
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.96 E-value=1.1 Score=42.76 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=38.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 003991 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (781)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (781)
++..|+.++|+......++.+|.+......+...++-.|+++.|..-++.+.+++|...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 45566666666666666666666666666666666666666666666666666666543
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.54 E-value=6.5 Score=41.33 Aligned_cols=253 Identities=11% Similarity=-0.019 Sum_probs=137.6
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH---HH-HcCC
Q 003991 395 GKYASAISIFDQILKE------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA---RA-ALGE 464 (781)
Q Consensus 395 g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~---~~-~~g~ 464 (781)
|++++|++.+....+. .+....+...+..++...|+++...+.+.-..........+...+... +. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5666776666544432 233456667777777777888777666654443333222221111111 11 1122
Q ss_pred HHHHHHHHHHHHHh----CCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHH
Q 003991 465 SVEAIQDLSKALEF----EPN-------SADILHERGIVNFKFKDFNAAVEDLSACVKLD--KEN----KSAYTYLGLAL 527 (781)
Q Consensus 465 ~~~A~~~~~~al~~----~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--p~~----~~~~~~la~~~ 527 (781)
.+. ......+.. ... ...+...++.++...|++.+|...+.....-. ..+ .+.+.....++
T Consensus 110 ~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 111 111122221 111 13456778999999999999999888875431 111 45677788889
Q ss_pred HHcCCHHHHHHHHHHHHh---hCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHH---HHHHHHHH
Q 003991 528 SSIGEYKKAEEAHLKAIQ---LDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKA---YHLRGLLL 595 (781)
Q Consensus 528 ~~~g~~~~A~~~~~~al~---~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~---~~~la~~~ 595 (781)
...+++..|...++++.. ..+.. ...+...|.++...++|.+|-.+|..++.... .++.. ....+.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 999999999999888642 12222 34667788889999999999999988875421 12211 11111111
Q ss_pred H-HCCCHHHHHHHHHHhhccCC--CCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhhcc
Q 003991 596 H-GLGQHKKAIKDLSSGLGIDP--SNIECLYLRASCYHA--IGEYREAIKDYDAALDLEL 650 (781)
Q Consensus 596 ~-~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p 650 (781)
. -.+....--....+... ++ .....+..+..++.. ..++......|...+.-+|
T Consensus 268 ~iLa~~~~~~~~ll~~~~~-~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQN-DNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHH-HSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred HHhCCCCchHHHHHHHHhh-cccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 1 11111111111111111 11 123456666666654 3567887777777665554
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.23 E-value=1.1 Score=46.35 Aligned_cols=111 Identities=14% Similarity=0.033 Sum_probs=67.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 003991 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA-LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (781)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 602 (781)
|......|+.+.|...+.+++.+....+-.- .. ...+-.+ ...++... ..+...++..+...|++.
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHH
Confidence 3344456788888888888887753321000 00 0001000 11111110 123445667777788888
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (781)
+|+..+..++..+|-+..++..+..++...|+..+|+..|+++-+
T Consensus 189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888777644
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.14 E-value=1.3 Score=42.10 Aligned_cols=120 Identities=13% Similarity=0.003 Sum_probs=69.4
Q ss_pred HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (781)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 606 (781)
+.+.|..++|+......++.+|.+......+..+++-.|+++.|.+-++.+.+++|.....-..+..+. .|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~aE~ 79 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KAAQ 79 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HHHH
Confidence 345566777777777777777777777777777777777777777777777777665433221111000 0000
Q ss_pred HHHHhhc--cCC---CCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991 607 DLSSGLG--IDP---SNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (781)
Q Consensus 607 ~~~~al~--~~p---~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (781)
.=...+. ..| ..+ .....-+......|+.++|...-.++++..|..+
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 0011111 111 112 2333445566678999999999999999988654
No 251
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.01 E-value=0.84 Score=48.61 Aligned_cols=80 Identities=14% Similarity=0.020 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (781)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (781)
..+..+|.+......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35667899988899999999999999999999999999999999999999999999999998877789999988887754
No 252
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=91.83 E-value=2.6 Score=48.49 Aligned_cols=95 Identities=9% Similarity=-0.108 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHHHHH
Q 003991 553 AWGHLTQFYQDLANSEKALECLQQVLYI----DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--DPSNIECLYLRA 626 (781)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la 626 (781)
.+..+...|.+.|+.++|...|...... ..-+...|..+...|.+.|+.++|.+.|++..+. .| |...|..+-
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI 207 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHH
Confidence 4445555555555555555555443211 1223555555555566666666666666655443 23 345555555
Q ss_pred HHHHHhCC-HHHHHHHHHHHHhh
Q 003991 627 SCYHAIGE-YREAIKDYDAALDL 648 (781)
Q Consensus 627 ~~~~~~g~-~~~A~~~~~~al~~ 648 (781)
.++.+.|+ .++|.++|++..+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc
Confidence 55555555 34555666555543
No 253
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.52 E-value=1 Score=48.01 Aligned_cols=80 Identities=18% Similarity=0.087 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 003991 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563 (781)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 563 (781)
..+..+|.+......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 36678899999999999999999999999999999999999999999999999999999999888888898888887654
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.12 E-value=3.7 Score=49.31 Aligned_cols=51 Identities=12% Similarity=-0.012 Sum_probs=34.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 003991 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (781)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (781)
+...+...+.++-|.. .+...|.++...+.+|.++...|++++|..+|.++
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444555666655443 33456667777777888888888888888888775
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=89.67 E-value=6 Score=45.58 Aligned_cols=98 Identities=8% Similarity=-0.134 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 003991 416 EALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERG 490 (781)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 490 (781)
..+..+-..|.+.|+.++|...|...... ..-+...|..+...|.+.|+.++|.+.|+++.+.. .-+...|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45677777888888888888888665432 23456677788888888888888888888887643 12566777777
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHhC
Q 003991 491 IVNFKFKD-FNAAVEDLSACVKLD 513 (781)
Q Consensus 491 ~~~~~~~~-~~~A~~~~~~a~~~~ 513 (781)
..+.+.|+ .++|.+++++.....
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 77777776 467778888877664
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.59 E-value=17 Score=43.45 Aligned_cols=190 Identities=12% Similarity=-0.028 Sum_probs=110.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------------------
Q 003991 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--------------------- 512 (781)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------------------- 512 (781)
.+...+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|+++-..
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34445566666665543 34556677777788888888888888888888775211
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003991 513 --DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585 (781)
Q Consensus 513 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 585 (781)
....+..|..+..++...+.++.+++..+.|++..+.+ ...|.++-..+...|+|++|...+...-.. ....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~ 971 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKK 971 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHH
Confidence 01123456667778888888888888888888765432 225677777888889988887777543221 1223
Q ss_pred HHHHHHHHHHHHCCCHH------------HHHHHHHH-hhcc-CCCC-HHHHHHHHHHHHHhCCHHH-HHHHHHHHHhh
Q 003991 586 KAYHLRGLLLHGLGQHK------------KAIKDLSS-GLGI-DPSN-IECLYLRASCYHAIGEYRE-AIKDYDAALDL 648 (781)
Q Consensus 586 ~~~~~la~~~~~~g~~~------------~A~~~~~~-al~~-~p~~-~~~~~~la~~~~~~g~~~~-A~~~~~~al~~ 648 (781)
..+..+...+...|..+ +-...+.. |-.. ++.+ +..|..|=..+...|++.. |...|+++.++
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 34444444444444332 22222211 1111 1221 2333334444555666655 44567777765
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.51 E-value=1.3 Score=46.46 Aligned_cols=60 Identities=8% Similarity=0.021 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 003991 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDP---MYPEALIGRGTARAFQRELEAAISDFTEA 441 (781)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (781)
.++..+|..++..|+++.|.+.|.++..... ...+.++....++...+++..+..++.++
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3455555555555555555555555544321 12233444444444444444444444443
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.07 E-value=1.5 Score=46.14 Aligned_cols=97 Identities=21% Similarity=0.301 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCH----HHH
Q 003991 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPN---SADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENK----SAY 520 (781)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p--~~~----~~~ 520 (781)
.++..+|..|...|+++.|.+.|.++...... -.+.+.....++...++|..+...+.++..... .++ ...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 34555666666666666666666665544222 245555666666666666666666666544311 111 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991 521 TYLGLALSSIGEYKKAEEAHLKAIQL 546 (781)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~ 546 (781)
...|.++...++|..|...|..++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 33455555566666666666555443
No 259
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.88 E-value=7.6 Score=44.43 Aligned_cols=250 Identities=14% Similarity=0.072 Sum_probs=114.4
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C---cH----HHHHHHH
Q 003991 392 VNEGKYASAISIFDQILKED-PMY----PEALIGRGTARAFQRELEAAISDFTEAIQSNP---S---AG----EAWKRRG 456 (781)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~---~~----~~~~~la 456 (781)
...|+.++++..+.+.+... .++ ..+++.+|.++...+ .+++.++...+.... . .. .+-..+|
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34566666666666655321 122 234555565555444 356666666655332 0 11 2334555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 003991 457 QARAALGESVEAIQDLSKALEFEPNS--ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 534 (781)
.++.-.++ +++...+...+..+... ..+-+.+|.++...|+-+.....+..+.....+...-...+|..+...|+.+
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 55554444 34555555555433211 1244456666667777655555555544433222222233444444566665
Q ss_pred HHHHHHHHHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991 535 KAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (781)
Q Consensus 535 ~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (781)
.+....+......... ..+...+|..|...|+.......+..+.....++..-.-.+|..+...|+.+.+...+....
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~ 621 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLS 621 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 5555544433321111 12234455666677775444445555543222222222223333334455444444443332
Q ss_pred ccCCCCHHHHHHHHHHHHHh--CC-HHHHHHHHHHHH
Q 003991 613 GIDPSNIECLYLRASCYHAI--GE-YREAIKDYDAAL 646 (781)
Q Consensus 613 ~~~p~~~~~~~~la~~~~~~--g~-~~~A~~~~~~al 646 (781)
. ..++.+.+..+.++-.. |+ ..+++..+.+..
T Consensus 622 ~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 622 K--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp G--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred h--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 2 22355554444443332 22 255666666554
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.68 E-value=0.94 Score=47.82 Aligned_cols=125 Identities=11% Similarity=0.082 Sum_probs=38.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHH---h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------
Q 003991 491 IVNFKFKDFNAAVEDLSACVK---L--------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL------------- 546 (781)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~a~~---~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------- 546 (781)
..++..+++++|..+-...+. + ++-...+|+.++.++...|+.............+
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 345566778888777665541 1 2223445666666666666655544333222211
Q ss_pred --Cc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991 547 --DR-NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (781)
Q Consensus 547 --~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (781)
++ .....+..+-+.|...+.++.|..+..++. .|.. ...++.+|.++.-+++|.+|.+++..|+...|
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 11 113445555556666666666666666553 2211 22344556666666666666666666665555
Q ss_pred C
Q 003991 617 S 617 (781)
Q Consensus 617 ~ 617 (781)
.
T Consensus 302 ~ 302 (523)
T 4b4t_S 302 H 302 (523)
T ss_dssp C
T ss_pred c
Confidence 4
No 261
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.60 E-value=3 Score=44.04 Aligned_cols=126 Identities=10% Similarity=-0.032 Sum_probs=59.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHH---h--------CCCCHHHHHHHHHHHHhcCCHHHHH----------HHHHHHHHh---
Q 003991 457 QARAALGESVEAIQDLSKALE---F--------EPNSADILHERGIVNFKFKDFNAAV----------EDLSACVKL--- 512 (781)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~---~--------~p~~~~~~~~la~~~~~~~~~~~A~----------~~~~~a~~~--- 512 (781)
..+...+++++|..+-...+. + ++-...+|+.++.++...|+..... ..+..+++.
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 344567889999888776551 1 2223557777778777777765432 233333332
Q ss_pred --CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991 513 --DKE-NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (781)
Q Consensus 513 --~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 582 (781)
++. ....+..+-+.|...+.++.|..+..++. .|.. ...++.+|.++...++|.+|..++..|+...|
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 221 24677888999999999999999999984 3321 56678899999999999999999999999887
Q ss_pred CC
Q 003991 583 RF 584 (781)
Q Consensus 583 ~~ 584 (781)
.+
T Consensus 302 ~~ 303 (523)
T 4b4t_S 302 HN 303 (523)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.46 E-value=33 Score=39.28 Aligned_cols=245 Identities=11% Similarity=0.047 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM------YP----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG- 449 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 449 (781)
..+++.+|.++. |...+++.++...+..+.. +. .+-..+|.++...++ +++.+.+...+..+....
T Consensus 413 ~GAllaLGli~a--g~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~ 489 (963)
T 4ady_A 413 GGSLYGLGLIYA--GFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG 489 (963)
T ss_dssp HHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhcC--CCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence 345555665554 4445788888888765430 11 345677777776665 466777777776443221
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHH
Q 003991 450 -EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS----AYTYLG 524 (781)
Q Consensus 450 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la 524 (781)
.+-+.+|.++.-.|+-+.....+..+.+...+...-...+|..+...|+.+.+....+.... . .++. +...+|
T Consensus 490 ~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~-~-~dp~vRygaa~alg 567 (963)
T 4ady_A 490 EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA-S-DESLLRYGGAFTIA 567 (963)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH-C-SCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh-C-CCHHHHHHHHHHHH
Confidence 34556778888888877666666666654332222233444445567777666665555443 2 2333 234567
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--CCC-H
Q 003991 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQ-H 601 (781)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~-~ 601 (781)
..|...|+...-...+..+.....++..-...+|......|+.+.+...+..... ..++.+.+..+.++-. .|+ .
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC
T ss_pred HHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc
Confidence 7788899966555566666654333333333344444445665444444433222 2345555444333322 333 3
Q ss_pred HHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhC
Q 003991 602 KKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIG 633 (781)
Q Consensus 602 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g 633 (781)
.+++..+.+... ++++. .+...||.+.....
T Consensus 646 ~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 646 QSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCc
Confidence 678888887754 44421 34555665554433
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.16 E-value=89 Score=30.91 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003991 481 NSADILHERGIVNFKFKDFNAAVEDL 506 (781)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~ 506 (781)
.+++.+..+|..|.+.+++.+|..+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34666666666666666666666655
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=68.77 E-value=25 Score=29.51 Aligned_cols=56 Identities=18% Similarity=0.053 Sum_probs=42.3
Q ss_pred HHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991 594 LLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (781)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (781)
++..+|+-++--+.+...+...+-+++.+..+|.+|.+.|+..+|.+.+.+|-+..
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 45667777777777777666666678888888888888888888888888887653
No 265
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=68.04 E-value=14 Score=27.13 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccchhhh
Q 003991 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDI 72 (781)
Q Consensus 41 ~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~~ 72 (781)
..|..+++.|++++|+.+|.+||..+++|..+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 45567889999999999999999999877764
No 266
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.48 E-value=64 Score=37.59 Aligned_cols=94 Identities=13% Similarity=-0.024 Sum_probs=69.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-C-------------------
Q 003991 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-P------------------- 616 (781)
Q Consensus 557 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p------------------- 616 (781)
+...+...|.++-|. ..+...|.++..-+.+|.++...|++++|..+|++|-.-- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 455566677776543 3456677788888889999999999999999998875210 0
Q ss_pred -C--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-ccCcHH
Q 003991 617 -S--NIECLYLRASCYHAIGEYREAIKDYDAALDL-ELDSME 654 (781)
Q Consensus 617 -~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 654 (781)
. ....|.....++...+-++-++...+.|++. .++++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 1 1246778899999999999999999999975 445544
No 267
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.45 E-value=54 Score=38.21 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=63.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------------C
Q 003991 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI---------------------D 581 (781)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------------~ 581 (781)
+...+...|.++-|. ..+...|.++..-+.+|.++...|++++|..+|+++-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 455556666666543 344555666666677888888888888888888765311 0
Q ss_pred CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-CCCCHH
Q 003991 582 KR--FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-DPSNIE 620 (781)
Q Consensus 582 ~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 620 (781)
+. ....|.....++...+-++-++...+.|++. .++++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 01 1235778888999999999999999999975 344443
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=58.15 E-value=1.4e+02 Score=29.13 Aligned_cols=215 Identities=12% Similarity=-0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcHHHHHHHH
Q 003991 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-----NPSAGEAWKRRG 456 (781)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la 456 (781)
+.+..++.-+..+++|++|++++... +..+...|++..|.+...-.++. .+-+......+.
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q ss_pred HHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 457 QARAALGE--------SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (781)
Q Consensus 457 ~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 528 (781)
.++..... ...|+.+-.+.-...-.++..+..+|..+...+++.+|..+|- --+.+++..+..+-.-..
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i---~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM---LGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH---TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH---hCCCccHHHHHHHHHHHH
Q ss_pred Hc---CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------------CCC
Q 003991 529 SI---GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID---------------------KRF 584 (781)
Q Consensus 529 ~~---g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------~~~ 584 (781)
.. |...++--++.+++ ..|...|+...|...+....+.. |..
T Consensus 177 ~~~~~~~~~e~dlf~~RaV--------------L~yL~l~n~~~A~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 242 (312)
T 2wpv_A 177 CQVDDIEDSTVAEFFSRLV--------------FNYLFISNISFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDY 242 (312)
T ss_dssp HHTTCCCHHHHHHHHHHHH--------------HHHHHTTBHHHHHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEESSC
T ss_pred HhcCCCCcchHHHHHHHHH--------------HHHHHhcCHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCC
Q ss_pred HHHHH-HHHHHHHHCCC---HHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991 585 SKAYH-LRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (781)
Q Consensus 585 ~~~~~-~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (781)
+...+ .+-..-.+.++ |..-.+.|...++ .-...+..+|..|+
T Consensus 243 pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~---~~~~~L~~Ig~~yF 289 (312)
T 2wpv_A 243 SDLNFLQLLLITCQTKDKSYFLNLKNHYLDFSQ---AYKSELEFLGQEYF 289 (312)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=57.47 E-value=52 Score=29.69 Aligned_cols=37 Identities=19% Similarity=-0.022 Sum_probs=21.0
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 003991 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (781)
Q Consensus 100 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 136 (781)
-..+.-|...|..+...|++.+|...|+.+++-...+
T Consensus 112 ~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 112 TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555566666666666666666665544433
No 270
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=57.11 E-value=0.00011 Score=75.34 Aligned_cols=215 Identities=16% Similarity=0.136 Sum_probs=109.6
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (781)
+.+..|..+|.+++..+...+|++.|-++ .+|. .+.....+..+.|.+++-+.++..+-+. -..+.+-..+..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 34677888888888888888888887654 3443 3444555566778888888887766553 2223333445556
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------------------CCCCH
Q 003991 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL---------------------DKENK 517 (781)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---------------------~p~~~ 517 (781)
|.+.++..+-.+.+ ..|+.+. ....|.-++..|.|+.|.-+|...-.. ..+++
T Consensus 126 yAk~~rL~elEefl-----~~~N~A~-iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-----NGPNNAH-IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HHTSCSSSTTTSTT-----SCCSSSC-THHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HHhhCcHHHHHHHH-----cCCCccc-HHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 66666543322111 1122211 223344444444444444333221000 01333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (781)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (781)
..|.....++...+++.-|.-+--..+-. ++. +-.+...|...|-+++-+..++.++.+..-+...+..||.+|.+
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvh-ade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVH-ADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCC-SSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhccc-HHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 44444455555555555444433332221 111 11223345556666666666666666655566666666665554
Q ss_pred CCCHHHHHHHHHH
Q 003991 598 LGQHKKAIKDLSS 610 (781)
Q Consensus 598 ~g~~~~A~~~~~~ 610 (781)
- +.++-.++++.
T Consensus 276 Y-~PeKlmEHlkl 287 (624)
T 3lvg_A 276 F-KPQKMREHLEL 287 (624)
T ss_dssp S-CTTHHHHHHTT
T ss_pred c-CHHHHHHHHHH
Confidence 3 34444444443
No 271
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=56.47 E-value=28 Score=27.04 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccchhhhh
Q 003991 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDIC 73 (781)
Q Consensus 41 ~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~~~ 73 (781)
..|-.+++.|+++.|+.+|.+||..+++|..+.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 455667899999999999999999998877643
No 272
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=54.99 E-value=18 Score=27.61 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003991 36 AITARIELAKLCSLRNWSKAIRILDSLLAQ 65 (781)
Q Consensus 36 ~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~ 65 (781)
+...-.+.-+.=..|+|++|+.+|..+|+.
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333334444445778899988888877654
No 273
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=52.12 E-value=18 Score=27.65 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 104 QAYILKGCAFSALGRKEEALSVWEKGY 130 (781)
Q Consensus 104 ~a~~~lg~~~~~~g~~~~A~~~~~~al 130 (781)
..+-+++..++..|+|++|+.+.++|.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345556666666666666666666654
No 274
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=51.15 E-value=75 Score=27.53 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H----HHHHH---HHHHHHHccCHHHHHHHHHHHHH
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY--P----EALIG---RGTARAFQRELEAAISDFTEAIQ 443 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~----~~~~~---la~~~~~~g~~~~A~~~~~~al~ 443 (781)
...-+..|..+++.|+|-+|-+.++.+....+.. . ..++. .|..+...|+..-|...+.+++.
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445667888999999999999999998776554 1 22222 33344566888888888887766
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=49.03 E-value=43 Score=24.55 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 003991 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQS 137 (781)
Q Consensus 105 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 137 (781)
--+.+|..+...|++++|..+|-+|+..-|+..
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 345689999999999999999999988777664
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=48.59 E-value=33 Score=25.92 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 003991 42 ELAKLCSLRNWSKAIRILDSLLAQ 65 (781)
Q Consensus 42 ~~~~~~~~g~~~~A~~~y~~ai~~ 65 (781)
++.+.=..|+|++|+.+|..+|+.
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 333444667777777766655543
No 277
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=46.18 E-value=85 Score=24.32 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991 623 YLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (781)
Q Consensus 623 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 687 (781)
+..|..++..|+|-+|-+.++.+....|+ ++.....+++....|......|+. |...+.++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~ 66 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAE 66 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHH
Confidence 34567777889999999999999988855 555666777777767666666666 666665543
No 278
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=43.39 E-value=48 Score=30.19 Aligned_cols=52 Identities=13% Similarity=-0.076 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH-----HHHHHHHHHHHhCCHH
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE-----CLYLRASCYHAIGEYR 636 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~ 636 (781)
....+.+|.++...++|.+|.+.+..|+...|.... ++..+--+-+-+|+..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345677888888888888888888888888776532 2333333445566644
No 279
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=42.06 E-value=58 Score=33.96 Aligned_cols=59 Identities=10% Similarity=0.037 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC--C--------CHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc
Q 003991 556 HLTQFYQDLANSEKALECLQQVLYIDK--R--------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (781)
Q Consensus 556 ~la~~~~~~g~~~~A~~~~~~al~~~~--~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (781)
.+-.+|++.++..-+...++..-...+ . ....++.+|.++...++|.+|.+.+..|+..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 344556666666666555544322211 0 1233455566666666666666666655554
No 280
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=41.76 E-value=44 Score=25.24 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=11.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 003991 44 AKLCSLRNWSKAIRILDSLLA 64 (781)
Q Consensus 44 ~~~~~~g~~~~A~~~y~~ai~ 64 (781)
.+.=..|+|++|+.+|.++|+
T Consensus 19 ve~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 19 VKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 334455666666665554443
No 281
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=39.79 E-value=1.2e+02 Score=22.95 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 624 LRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
..|.-.-..|++++|+.+|..+++.
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344445667777777776666643
No 282
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=39.05 E-value=49 Score=36.60 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=47.6
Q ss_pred hhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHH---HHHHHHHH
Q 003991 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE---EALSVWEK 128 (781)
Q Consensus 72 ~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~---~A~~~~~~ 128 (781)
...+|...+..|+|.-|...++.++..+|++.+|...++.+|.++|.-. -.+.+|-.
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~~~~r~~yl~ 511 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAENAGWRNSYLS 511 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 4467888889999999999999999999999999999999999999433 34444444
No 283
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=38.94 E-value=0.00022 Score=73.18 Aligned_cols=215 Identities=14% Similarity=0.068 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003991 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (781)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (781)
+.+.+|..+|.++...+...+|++.|-++ +++..+.....+....|.+++-+.++.-+-+. -..+.+-..+..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 45678999999999999999998887664 33333445555666778888888887766554 3344555566667
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------hCcccH
Q 003991 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ---------------------LDRNFL 551 (781)
Q Consensus 493 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------------~~~~~~ 551 (781)
|.+.++..+-.+++. .|+... ....|.-++..|.|+.|.-+|...-. ..-+++
T Consensus 126 yAk~~rL~elEefl~-----~~N~A~-iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-----GPNNAH-IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HHTSCSSSTTTSTTS-----CCSSSC-THHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HHhhCcHHHHHHHHc-----CCCccc-HHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 777776544322221 122221 12345555555555544443322100 011344
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (781)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (781)
..|..........+++.-|..+--..+-. ++. +-.+...|...|.+++-+..++.++.+..-+...+..||.+|.+
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvh-ade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVH-ADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCC-SSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhccc-HHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 55666666666666666665554444422 211 12234456677888888888888888777778888888888765
Q ss_pred hCCHHHHHHHHHH
Q 003991 632 IGEYREAIKDYDA 644 (781)
Q Consensus 632 ~g~~~~A~~~~~~ 644 (781)
- +.++-+++++.
T Consensus 276 Y-~PeKlmEHlkl 287 (624)
T 3lvg_A 276 F-KPQKMREHLEL 287 (624)
T ss_dssp S-CTTHHHHHHTT
T ss_pred c-CHHHHHHHHHH
Confidence 4 45555555544
No 284
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=38.90 E-value=31 Score=26.39 Aligned_cols=25 Identities=20% Similarity=-0.060 Sum_probs=17.2
Q ss_pred hhhHHHHHHhhhCHHHHHHHHHHHH
Q 003991 72 ICNRAFCYSQLELHKHVIRDCDKAL 96 (781)
Q Consensus 72 ~~~rA~~~~~~~~~~~A~~~~~~al 96 (781)
+..||..+++.|.|++||....+|.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4567777777777777777665554
No 285
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.59 E-value=1.5e+02 Score=25.69 Aligned_cols=68 Identities=9% Similarity=-0.012 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc-HHHHHHHHHHH-HHHHHHHHHHhchhhHHHHHhhhcC
Q 003991 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDS-MEKFVLQCLAF-YQKEIALYTASKINSEFCWFDIDGD 688 (781)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~ 688 (781)
--+.-+..++..|+|-+|-+.++.+....+.. .+..+..+++. ...|......++..-|...+.++..
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556777888899999999999999887554 34556678888 7788888888998888888877654
No 286
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.06 E-value=4.1e+02 Score=29.08 Aligned_cols=21 Identities=19% Similarity=0.047 Sum_probs=14.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 003991 387 RGIAQVNEGKYASAISIFDQI 407 (781)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~ 407 (781)
.-..++-.|+|+.|+.++-+.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~ 320 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF 320 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc
Confidence 344566788888888877654
No 287
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=35.02 E-value=78 Score=28.75 Aligned_cols=34 Identities=9% Similarity=0.119 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003991 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY 414 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 414 (781)
+...|.+|..++.+++|.+|...+.+|+...|..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 4566667777777777777777777777666543
No 288
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=33.94 E-value=3.7e+02 Score=29.43 Aligned_cols=95 Identities=16% Similarity=-0.041 Sum_probs=44.0
Q ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003991 401 ISIFDQILK-EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479 (781)
Q Consensus 401 ~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 479 (781)
+.-+++.+. ..|.+... ..-.++.-.|+|+.|+.++-+. . ....+++.++..+ .|-... -...+..+
T Consensus 281 L~~LQ~~I~~yGe~~F~~--lYf~vLlLtgqFE~AI~~L~~~---~-~vdAVH~AIaL~~--~gLL~~----~~~lls~~ 348 (661)
T 2qx5_A 281 LEDFQNIIISYGPSRFSN--YYLQTLLLSGLYGLAIDYTYTF---S-EMDAVHLAIGLAS--LKLFKI----DSSTRLTK 348 (661)
T ss_dssp HHHHHHHHHHHCGGGGTT--CHHHHHHHTTCHHHHHHHHHTT---C-HHHHHHHHHHHHH--TTC---------------
T ss_pred HHHHHHHHHHhhhhhhhh--HHHHHHHHHhhHHHHHHHHHhc---C-chhHHHHHHHHHH--cCCccC----CCcccccC
Confidence 444555443 33333222 4566777899999999988765 1 1122444444444 333332 12233333
Q ss_pred CCCHHHHHHHHHHH------HhcCCHHHHHHHHHHH
Q 003991 480 PNSADILHERGIVN------FKFKDFNAAVEDLSAC 509 (781)
Q Consensus 480 p~~~~~~~~la~~~------~~~~~~~~A~~~~~~a 509 (781)
+.. ...+++.+. +...+..+|+++|--.
T Consensus 349 ~~~--~~lN~arLI~~Yt~~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 349 KPK--RDIRFANILANYTKSFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp --------CHHHHHHHHHTTTTTTCHHHHHHHHHGG
T ss_pred CCc--ccccHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 322 122233322 3567888888887655
No 289
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=33.47 E-value=57 Score=25.25 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=9.7
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 003991 47 CSLRNWSKAIRILDSLLA 64 (781)
Q Consensus 47 ~~~g~~~~A~~~y~~ai~ 64 (781)
=..|+|++|+.+|..+|+
T Consensus 26 D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 345666666665554443
No 290
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=31.59 E-value=55 Score=24.67 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=26.6
Q ss_pred HHHHHHH---HHHHhcCCHHHHHHHHHHHHhcccchhh
Q 003991 37 ITARIEL---AKLCSLRNWSKAIRILDSLLAQSYEIQD 71 (781)
Q Consensus 37 ~~~r~~~---~~~~~~g~~~~A~~~y~~ai~~~~~~~~ 71 (781)
...|..+ -++|+.|+|.+|..+|.++.....|+..
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i 88 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEI 88 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHH
Confidence 4455333 4689999999999999999988765543
No 291
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=31.40 E-value=1.7e+02 Score=22.02 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=12.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHh
Q 003991 626 ASCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 626 a~~~~~~g~~~~A~~~~~~al~ 647 (781)
|.-.-..|++++|+.+|..+++
T Consensus 26 Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 26 AVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3444556666666666666554
No 292
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=30.70 E-value=4e+02 Score=26.23 Aligned_cols=190 Identities=11% Similarity=0.044 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCc----HHH
Q 003991 381 VDFRLSRGIAQVNEGKY---ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSA----GEA 451 (781)
Q Consensus 381 ~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~----~~~ 451 (781)
.+-.+.+-......|+| =+|-+.++.+. .=|...++|++|++.+...... .... .+.
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~--------------~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVA--------------ARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHH--------------HHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHH
Confidence 33445555666777888 67766666543 3356677888887765443221 0011 111
Q ss_pred HHHHHHHHHHcCC--HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991 452 WKRRGQARAALGE--SVEAIQDLSKALEFEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (781)
Q Consensus 452 ~~~la~~~~~~g~--~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 528 (781)
-..+..+|...+- -++...-+.+++...|. .+.- .. =..+|+.+-.+.-...-.++..+..+|..|.
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r-~~---------fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~ 147 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR-KR---------FVKEMIDWSKKFGDYPAGDPELHHVVGTLYV 147 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH-HH---------HHHHHHHHHHHHSSCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH-HH---------HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence 2222233333321 12233333333333332 2210 00 1233444433311123357889999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHCCCHHHHHHH
Q 003991 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL-LLHGLGQHKKAIKD 607 (781)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~-~~~~~g~~~~A~~~ 607 (781)
..+++.+|..+|- +. ..+.+..+..+-.-+...+ .|.....+...+. .|...++...|...
T Consensus 148 ~e~~~~~Ae~H~i--lg-~~~s~~~~a~mL~ew~~~~---------------~~~e~dlfiaRaVL~yL~l~n~~~A~~~ 209 (336)
T 3lpz_A 148 EEGEFEAAEKHLV--LG-TKESPEVLARMEYEWYKQD---------------ESHTAPLYCARAVLPYLLVANVRAANTA 209 (336)
T ss_dssp HTTCHHHHHHHHT--TS-CTTHHHHHHHHHHHHHHTS---------------CGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCCHHHHHHHHH--hc-CCchHHHHHHHHHHHHHhc---------------CCccHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999888873 11 1111233322222222222 2344455555444 36778888888876
Q ss_pred HHHhh
Q 003991 608 LSSGL 612 (781)
Q Consensus 608 ~~~al 612 (781)
+....
T Consensus 210 ~~~f~ 214 (336)
T 3lpz_A 210 YRIFT 214 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 293
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=29.61 E-value=78 Score=23.88 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=13.3
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 003991 46 LCSLRNWSKAIRILDSLLAQ 65 (781)
Q Consensus 46 ~~~~g~~~~A~~~y~~ai~~ 65 (781)
.=..|+|++|+.+|..+|+.
T Consensus 23 ~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 23 LDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 33567777777777766654
No 294
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=29.54 E-value=1.8e+02 Score=21.80 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=12.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHh
Q 003991 627 SCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~al~ 647 (781)
.-.-..|++++|+.+|..+++
T Consensus 19 ve~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 19 VKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 334556677766666666654
No 295
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=29.41 E-value=1.4e+02 Score=23.12 Aligned_cols=56 Identities=7% Similarity=0.095 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHH--HHHHHHHHccCHHHHHHHHHHHHH
Q 003991 386 SRGIAQVNEGKYASAISIFDQILKEDPMYP----EALI--GRGTARAFQRELEAAISDFTEAIQ 443 (781)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~--~la~~~~~~g~~~~A~~~~~~al~ 443 (781)
..|..++..|+|-+|-+.++.+-...|... ..+. ..|..+...|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 456667777777777777777766664321 1112 222333344555 5555555544
No 296
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=29.30 E-value=1.6e+02 Score=25.34 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccchhhhhhHHHHHHhhhCHHHHH-HHHHHHHhcCCCchhHHHHHHHHHHHc
Q 003991 38 TARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVI-RDCDKALQLDPTLLQAYILKGCAFSAL 116 (781)
Q Consensus 38 ~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~~~~rA~~~~~~~~~~~A~-~~~~~al~~~p~~~~a~~~lg~~~~~~ 116 (781)
+.-+..+.+|-+.+|.+-|..++..---.=....-+-.|.+|++..++.+-- ......|.+. ...-+++=++|.-.
T Consensus 10 ~a~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlk---Sde~yL~YWIyiGR 86 (161)
T 2ynq_A 10 EAYIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLK---TDEQYMLYWIYIGR 86 (161)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTT---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCcc---CCHHHHHHHHHHcC
Confidence 3346778899999999999877643222222234788999999987665322 2222233322 22334444566667
Q ss_pred CCHHHHHHHHHHH
Q 003991 117 GRKEEALSVWEKG 129 (781)
Q Consensus 117 g~~~~A~~~~~~a 129 (781)
|++++|+..=+..
T Consensus 87 g~~~eAlDiA~~L 99 (161)
T 2ynq_A 87 SQSEEALELARTI 99 (161)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CchHHHHHHHHhc
Confidence 9999998654443
No 297
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.81 E-value=52 Score=24.48 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991 383 FRLSRGIAQVNEGKYASAISIFDQILK 409 (781)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~ 409 (781)
....+|+-+...|+|+.|+.+|+.+++
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 345678888888999999999988876
No 298
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.05 E-value=1.4e+02 Score=31.03 Aligned_cols=64 Identities=9% Similarity=-0.066 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Q 003991 521 TYLGLALSSIGEYKKAEEAHLKAIQLDR----------NFLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRF 584 (781)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~ 584 (781)
..+-.+|++.++..-+...++..-...+ ......+.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3455778888888877777754432221 12456778899999999999999999999887 6654
No 299
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=27.99 E-value=99 Score=34.13 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 003991 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR 429 (781)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 429 (781)
+..+..|...+..|+|.-|.++.+.++..+|++..+...++.+|.++|
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666666666666666665554
No 300
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=27.81 E-value=96 Score=24.04 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991 623 YLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (781)
Q Consensus 623 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (781)
..+|..+...|+++.|+.+|-+|+...|+-.+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45888888899999999999999988887554
No 301
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.40 E-value=91 Score=25.33 Aligned_cols=18 Identities=6% Similarity=0.062 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhcCCCch
Q 003991 86 KHVIRDCDKALQLDPTLL 103 (781)
Q Consensus 86 ~~A~~~~~~al~~~p~~~ 103 (781)
.+|+..|..++...|.+.
T Consensus 42 ~~Aie~l~~alk~e~~~~ 59 (117)
T 2cpt_A 42 QHAVQYFLHVVKYEAQGD 59 (117)
T ss_dssp HHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHHHHHHHhccCCH
Confidence 345555666666664433
No 302
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=26.73 E-value=1.3e+02 Score=22.70 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003991 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKED 411 (781)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 411 (781)
..+...+..|.-++..++|.+|..+|+++....
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 346677788888999999999999999987654
No 303
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.38 E-value=64 Score=23.99 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991 621 CLYLRASCYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (781)
-...+|+=|...|+|+.|+.+|+.+++.
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3567888899999999999999988764
No 304
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=25.14 E-value=2.6e+02 Score=22.60 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=14.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhh
Q 003991 628 CYHAIGEYREAIKDYDAALDL 648 (781)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~ 648 (781)
-.-..|+|++|+.+|..++++
T Consensus 27 e~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 27 QEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHH
Confidence 445567777777777777653
No 305
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.11 E-value=2.3e+02 Score=21.69 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=11.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHh
Q 003991 627 SCYHAIGEYREAIKDYDAALD 647 (781)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~al~ 647 (781)
.-.-..|+|++|+.+|..+++
T Consensus 23 ve~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 23 VELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334455666666666655554
No 306
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=25.02 E-value=4.3e+02 Score=24.68 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhc-----cCCCCHH---HHHHHHHHHH-HhCCHHHHHHHHHHHHh
Q 003991 602 KKAIKDLSSGLG-----IDPSNIE---CLYLRASCYH-AIGEYREAIKDYDAALD 647 (781)
Q Consensus 602 ~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~al~ 647 (781)
+.|...|+.|.. +.|.+|. ...+.+..|+ -+++.++|....++|+.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666766653 4666663 3344444444 47888888887777654
No 307
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=21.97 E-value=2.3e+02 Score=28.07 Aligned_cols=29 Identities=14% Similarity=-0.074 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (781)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (781)
...|..+|-.+++.+++.+|+..+..+-.
T Consensus 296 vYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 33444455555555555555555544433
No 308
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=21.94 E-value=2e+02 Score=23.89 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=12.7
Q ss_pred HHHHHhcCCHHHHHHHH
Q 003991 43 LAKLCSLRNWSKAIRIL 59 (781)
Q Consensus 43 ~~~~~~~g~~~~A~~~y 59 (781)
+..+...++|.....+.
T Consensus 43 L~~lI~~~~W~~~Rn~I 59 (133)
T 3ls0_A 43 LQGLIADQNWVDTQTYI 59 (133)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHhhhcchHHHHHHH
Confidence 55688999998876643
No 309
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=20.96 E-value=2e+02 Score=28.52 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991 103 LQAYILKGCAFSALGRKEEALSVWEKGY 130 (781)
Q Consensus 103 ~~a~~~lg~~~~~~g~~~~A~~~~~~al 130 (781)
+-.|..+|-.+++.+++.+|++.+-.|-
T Consensus 296 vYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 3355555556666666666666665543
No 310
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=20.64 E-value=2.3e+02 Score=25.13 Aligned_cols=62 Identities=8% Similarity=-0.137 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH-Hhcc------c--chhhhhhHHHHHHhhhCHHHHHHHHHHHHh
Q 003991 36 AITARIELAKLCSLRNWSKAIRILDSL-LAQS------Y--EIQDICNRAFCYSQLELHKHVIRDCDKALQ 97 (781)
Q Consensus 36 ~~~~r~~~~~~~~~g~~~~A~~~y~~a-i~~~------~--~~~~~~~rA~~~~~~~~~~~A~~~~~~al~ 97 (781)
....-...|+.+++|+-+.|++.++-+ +.++ | ...-..++|..++..|+|.+|-..+..+..
T Consensus 108 K~aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 108 KESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 334446778999999999999988764 2222 1 112267899999999999999888777654
No 311
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=20.47 E-value=3.9e+02 Score=22.53 Aligned_cols=51 Identities=14% Similarity=0.038 Sum_probs=23.6
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (781)
Q Consensus 563 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (781)
.+|+-++-.+.+...+...+-++..+..+|.+|.+.|+..+|-+.+.+|.+
T Consensus 103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 103 IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344444444444443333334455555555555555555555555554443
Done!